Psyllid ID: psy12836
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | 2.2.26 [Sep-21-2011] | |||||||
| Q8CEE7 | 334 | Retinol dehydrogenase 13 | yes | N/A | 0.648 | 0.832 | 0.491 | 5e-67 | |
| Q8NBN7 | 331 | Retinol dehydrogenase 13 | yes | N/A | 0.643 | 0.833 | 0.477 | 4e-66 | |
| Q96NR8 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.571 | 0.775 | 0.509 | 1e-61 | |
| Q8TC12 | 318 | Retinol dehydrogenase 11 | no | N/A | 0.564 | 0.761 | 0.481 | 8e-60 | |
| Q8BYK4 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.601 | 0.816 | 0.482 | 8e-59 | |
| P59837 | 316 | Retinol dehydrogenase 12 | no | N/A | 0.571 | 0.775 | 0.494 | 1e-58 | |
| Q9QYF1 | 316 | Retinol dehydrogenase 11 | no | N/A | 0.587 | 0.797 | 0.471 | 2e-58 | |
| Q9HBH5 | 336 | Retinol dehydrogenase 14 | no | N/A | 0.571 | 0.729 | 0.451 | 2e-57 | |
| Q9ERI6 | 334 | Retinol dehydrogenase 14 | no | N/A | 0.580 | 0.745 | 0.458 | 3e-57 | |
| Q17QU7 | 377 | Dehydrogenase/reductase S | no | N/A | 0.585 | 0.665 | 0.444 | 2e-50 |
| >sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 146/297 (49%), Positives = 191/297 (64%), Gaps = 19/297 (6%)
Query: 114 VNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC 173
V G ++ VL D + G + + GK VIVTGANTGIGK A ELAKR VI+AC
Sbjct: 10 VVGTVIGGTVLLKDYVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILAC 69
Query: 174 RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSG 233
RD++KCE A K++ E+ N V + DLAS +SIR FA +V KE +++++L+NNA V
Sbjct: 70 RDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMR 129
Query: 234 CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293
C TE+ E+Q GVN++GHFLLT LLLDKL+A SAPSRIIN
Sbjct: 130 CPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKA------------------SAPSRIIN 171
Query: 294 VSSVAHKRGTINKEDLNSE-NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
+SS+AH G I+ EDLN + YD AY QSKLA VLFT+EL+ RL+G+G+TVNA+HPG
Sbjct: 172 LSSLAHVAGHIDFEDLNWQMKKYDTKAAYCQSKLAVVLFTKELSHRLQGSGVTVNALHPG 231
Query: 353 IVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409
+ T++ RH+ ++S S +L P WL KSP+ AQ Y ++ LENVSGKYF
Sbjct: 232 VARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAVAEELENVSGKYF 288
|
Does not exhibit retinol dehydrogenase (RDH) activity in vitro. Mus musculus (taxid: 10090) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 191/295 (64%), Gaps = 19/295 (6%)
Query: 116 GVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175
G + VL D + G + + GK VIVTGANTGIGK A ELA+R +I+ACRD
Sbjct: 12 GTVAGAAVLLKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRD 71
Query: 176 LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR 235
++KCE A K++ E+ N +V R DLAS +SIR FA ++ +E +++++LINNAGV C
Sbjct: 72 MEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCP 131
Query: 236 KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295
TE+ E+Q GVNH+GHFLLT LLLDKL+A SAPSRIIN+S
Sbjct: 132 HWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKA------------------SAPSRIINLS 173
Query: 296 SVAHKRGTINKEDLNSEN-SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
S+AH G I+ +DLN + Y+ AY QSKLA VLFT+EL++RL+G+G+TVNA+HPG+
Sbjct: 174 SLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKLAIVLFTKELSRRLQGSGVTVNALHPGVA 233
Query: 355 NTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409
T++ RH+ + S S+ L P+ WL +KSP AQ Y ++ L +VSGKYF
Sbjct: 234 RTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEELADVSGKYF 288
|
Does not exhibit retinol dehydrogenase (RDH) activity in vitro. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 177/269 (65%), Gaps = 24/269 (8%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V++TGANTGIGK ARELA R A+V +ACRD+ K E A E+ +++KN VL RK D
Sbjct: 39 GKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L+ +SIRAFAE E K++++LINNAGV C T + E LGVNH+GHFLLT LL
Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLL 158
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L++L+ SAP+R++NVSSVAH G I DL SE Y AY
Sbjct: 159 LERLKV------------------SAPARVVNVSSVAHHIGKIPFHDLQSEKRYSRGFAY 200
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
SKLANVLFTRELAKRL+GTG+T AVHPG+V ++++RHSS +L L F
Sbjct: 201 CHSKLANVLFTRELAKRLQGTGVTTYAVHPGVVRSELVRHSSLL------CLLWRLFSPF 254
Query: 382 IKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+K+ R+GAQT ++ +L LE +SGKYF+
Sbjct: 255 VKTAREGAQTSLHCALAEGLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 181/272 (66%), Gaps = 30/272 (11%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+VTGANTGIGK A+ELA+R A+V +ACRD++K E KE+ + N+ VL RK D
Sbjct: 41 GKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L+ +SIRAFA+ E K ++VLINNAGV C T + E+ +GVNH+GHFLLT LL
Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL 160
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L+KL +ESAPSRI+NVSS+AH G I+ +L E Y+ AY
Sbjct: 161 LEKL------------------KESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAY 202
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL- 380
SKLAN+LFT+ELA+RL+G+G+T +VHPG V ++++RHSS+ ++ + WL
Sbjct: 203 CHSKLANILFTQELARRLKGSGVTTYSVHPGTVQSELVRHSSF---------MRWMWWLF 253
Query: 381 --FIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
FIK+P+QGAQT ++ +L LE +SG +F+
Sbjct: 254 SFFIKTPQQGAQTSLHCALTEGLEILSGNHFS 285
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity towards 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 0 |
| >sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 175/282 (62%), Gaps = 24/282 (8%)
Query: 129 LGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
G T GK+V++TGANTGIGK ARELA+R A+V +ACRD+ K E A E+
Sbjct: 26 FAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRA 85
Query: 189 ESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG 248
++KN VL RK DL+ +SIRAFAE E KK+++LINNAGV C T + E G
Sbjct: 86 DTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFG 145
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VNH+GHFLLT LLL++L +ESAP+R++N+SS+AH G I D
Sbjct: 146 VNHLGHFLLTYLLLERL------------------KESAPARVVNLSSIAHLIGKIRFHD 187
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
L + Y AY SKLAN+LFTRELAKRL+GTG+T AVHPG+V ++I R+S Y
Sbjct: 188 LQGQKRYCSAFAYGHSKLANLLFTRELAKRLQGTGVTAYAVHPGVVLSEITRNS--YLLC 245
Query: 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
L + P F KS QGAQT ++ +L LE +SGKYF+
Sbjct: 246 LLWRLFSP----FFKSTSQGAQTSLHCALAEDLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/269 (49%), Positives = 173/269 (64%), Gaps = 24/269 (8%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V++TGANTGIGK ARELA+R A+V +ACRD+ K E A E+ ++KN VL RK D
Sbjct: 39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L+ +SIRAFAE E K++++LINNAGV C T + E L VNH+GHFLLT LL
Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLL 158
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L +L +ESAP+R++N+SSVAH G I DL + Y+ AY
Sbjct: 159 LGRL------------------KESAPARVVNLSSVAHHLGKIRFHDLQGDKYYNLGFAY 200
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
SKLANVLFTRELAKRL+GTG+T AVHPGIV + ++RHS +L L F
Sbjct: 201 CHSKLANVLFTRELAKRLKGTGVTTYAVHPGIVRSKLVRHS------FLLCLLWRLFSPF 254
Query: 382 IKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+K+ +GAQT ++ +L LE +SGKYF+
Sbjct: 255 LKTTWEGAQTSLHCALAEGLEPLSGKYFS 283
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 179/276 (64%), Gaps = 24/276 (8%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
T GK+ IVTGANTGIGK A++LA+R A+V +ACRD+DK E A +E+ + N
Sbjct: 31 TSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQ 90
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGH 254
V RK DLA +SIRAFA++ E K +++LINNAGV C T + E+ +GVNH+GH
Sbjct: 91 VFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGH 150
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
FLLT LLL+KL +ESAPSRI+N+SS+ H G I+ +L E
Sbjct: 151 FLLTHLLLEKL------------------KESAPSRIVNLSSLGHHLGRIHFHNLQGEKF 192
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
Y AY SKLAN+LFT+ELAKRL+G+G+T +VHPG V++++ R+SS WL
Sbjct: 193 YSAGLAYCHSKLANILFTKELAKRLKGSGVTTYSVHPGTVHSELTRYSSIM-RWLWQ--- 248
Query: 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
L ++FIK+P++GAQT +Y +L LE++SG +F+
Sbjct: 249 --LFFVFIKTPQEGAQTSLYCALTEGLESLSGSHFS 282
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent all-trans-retinal reductase. Also involved in the metabolism of short-chain aldehydes. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 0 |
| >sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 179/286 (62%), Gaps = 41/286 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY------- 194
GK V++TGAN+G+G+A A EL + A+VIM CRD + E+A ++ E +
Sbjct: 43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102
Query: 195 ------VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG 248
++ R+ DLAS S+RAF +E+ +E +++VLINNAG+ C M TE+ E+Q G
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VNH+GHFLLT LLL L++ SAPSRI+ VSS +K G IN +D
Sbjct: 163 VNHLGHFLLTNLLLGLLKS------------------SAPSRIVVVSSKLYKYGDINFDD 204
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
LNSE SY+ + Y++SKLAN+LFTRELA+RLEGT +TVN +HPGIV T++ RH
Sbjct: 205 LNSEQSYNKSFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHI---- 260
Query: 369 LSTVVLKPLV----WLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+++KPL W F K+P +GAQT +Y + P +E VSG+YF
Sbjct: 261 --PLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFG 304
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 179/279 (64%), Gaps = 30/279 (10%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA----RKEVV------LESK 191
GK V++TGAN+G+G+A A EL + A+VIM CRD + E+A R+E+ +
Sbjct: 44 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
+ ++ ++ DLAS S+RAF +E+ +E +++VLINNAGV C TE+ E+Q GVNH
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNH 163
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+GHFLLT LLL L++ SAPSRI+ VSS +K G IN EDLNS
Sbjct: 164 LGHFLLTNLLLGLLKS------------------SAPSRIVVVSSKLYKYGEINFEDLNS 205
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371
E SY+ + Y++SKLAN+LFTRELA+RLEGT +TVN +HPGIV T++ RH + L+
Sbjct: 206 EQSYNKSFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRH--IHIPLLAR 263
Query: 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+ + W F K+P +GAQT +Y + P +E VSG+YF
Sbjct: 264 PLFNLVSWAFFKTPLEGAQTSIYLACSPDVEGVSGRYFG 302
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 170/279 (60%), Gaps = 28/279 (10%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
S RG+ +VTGAN+GIGK A ELA+R A+V++ACR ++ E A ++ ES N V+
Sbjct: 32 ASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIF 91
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLL 257
DLAS S+RAFA ++++LI+NAG+S C + T E L L VNH+G FLL
Sbjct: 92 MALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGR--TREPFNLLLRVNHIGPFLL 149
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE--NSY 315
T LLL +L+ SAPSR++ VSS AH+RG ++ L+
Sbjct: 150 THLLLPRLKT------------------SAPSRVVVVSSAAHRRGRLDFTRLDHPVVGWQ 191
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI-LRHSSYYDSWLSTVVL 374
+AY SKLANVLF RELA +LEGTG+T A HPG VN+++ LRH WL +L
Sbjct: 192 QELRAYANSKLANVLFARELATQLEGTGVTCYAAHPGPVNSELFLRH---VPGWLRP-LL 247
Query: 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA-CY 412
+PL WL +++PR GAQT +Y +L +E +SG+YFA C+
Sbjct: 248 RPLAWLVLRAPRGGAQTPLYCALQEGIEPLSGRYFANCH 286
|
Putative oxidoreductase. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| 194755625 | 331 | GF13188 [Drosophila ananassae] gi|190621 | 0.620 | 0.803 | 0.588 | 7e-95 | |
| 307173018 | 329 | Retinol dehydrogenase 13 [Camponotus flo | 0.624 | 0.814 | 0.604 | 2e-93 | |
| 345498228 | 324 | PREDICTED: retinol dehydrogenase 13-like | 0.631 | 0.836 | 0.619 | 4e-93 | |
| 321478548 | 321 | hypothetical protein DAPPUDRAFT_303085 [ | 0.631 | 0.844 | 0.598 | 9e-91 | |
| 195332181 | 331 | GM20968 [Drosophila sechellia] gi|194124 | 0.620 | 0.803 | 0.584 | 4e-90 | |
| 321450649 | 311 | hypothetical protein DAPPUDRAFT_300980 [ | 0.620 | 0.855 | 0.605 | 4e-90 | |
| 24586328 | 331 | CG30491, isoform A [Drosophila melanogas | 0.620 | 0.803 | 0.588 | 5e-90 | |
| 194863756 | 331 | GG23291 [Drosophila erecta] gi|190662465 | 0.620 | 0.803 | 0.588 | 5e-90 | |
| 322783281 | 325 | hypothetical protein SINV_12126 [Solenop | 0.624 | 0.824 | 0.611 | 5e-90 | |
| 195474444 | 331 | GE19137 [Drosophila yakuba] gi|194175602 | 0.620 | 0.803 | 0.584 | 6e-90 |
| >gi|194755625|ref|XP_001960084.1| GF13188 [Drosophila ananassae] gi|190621382|gb|EDV36906.1| GF13188 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 216/284 (76%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
D++ G ++T+ET GK+VIVTGANTGIGK RELAKR A V MACR+L KCE+ARKE+
Sbjct: 30 DLMQGGRFTKETDETGKVVIVTGANTGIGKETVRELAKRNATVYMACRNLKKCEEARKEI 89
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLE+KN + CR+CDLASQESIR F K+E K+++LINNAGV C + LT + IELQ
Sbjct: 90 VLETKNPNIYCRQCDLASQESIRHFVAAYKREQTKLHILINNAGVMRCPRSLTTDGIELQ 149
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
LGVNHMGHFLLT LLD L ++SAPSRI+NVSS+AH RG IN
Sbjct: 150 LGVNHMGHFLLTTQLLDML------------------KKSAPSRIVNVSSLAHTRGEINT 191
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DLNS+ SYD +AY+QSKLANVLFTRELA+RLEGTG+TVNA+HPG+V+T+I+RH +++
Sbjct: 192 GDLNSDKSYDEGKAYSQSKLANVLFTRELARRLEGTGVTVNALHPGVVDTEIIRHMGFFN 251
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
++ + + +KPL W F+K+P+ GAQT +Y +LDP L+ V+G+YF+
Sbjct: 252 NFFAGLFVKPLFWPFVKTPKNGAQTTLYVALDPELKKVTGQYFS 295
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307173018|gb|EFN64160.1| Retinol dehydrogenase 13 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 173/286 (60%), Positives = 210/286 (73%), Gaps = 18/286 (6%)
Query: 124 LRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183
L D +GG KY + KIVIVTGANTGIG+ IA ELAKR AKVIMACRD+ KCE+AR
Sbjct: 24 LTKDYMGGTKYMGTENLNNKIVIVTGANTGIGREIASELAKRDAKVIMACRDMKKCEEAR 83
Query: 184 KEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKI 243
+ +V++++NKYV CRKCDLASQESIR F E+ KKE K+++LINNAGV C K T+E I
Sbjct: 84 QSIVIDTRNKYVYCRKCDLASQESIRTFVEQFKKEFDKLHILINNAGVMRCPKSYTKEGI 143
Query: 244 ELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303
E+QLGVNH+GHFLLT L LD L+A SAPSRI+NVSS AH+RG
Sbjct: 144 EMQLGVNHIGHFLLTNLFLDVLKA------------------SAPSRIVNVSSAAHRRGQ 185
Query: 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
IN DLNS+ YD +AY QSKLA + FTRELA RL+GT +TVNAVHPGIV+T+I RH
Sbjct: 186 INMTDLNSDKEYDAGKAYAQSKLAIIFFTRELANRLKGTNVTVNAVHPGIVDTNITRHLF 245
Query: 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409
Y+++ + + LKP W FI++P QGAQTI+YA+LD SL NVSG YF
Sbjct: 246 VYNNFFTRIFLKPFAWPFIRAPFQGAQTILYAALDTSLANVSGCYF 291
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345498228|ref|XP_001606362.2| PREDICTED: retinol dehydrogenase 13-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 179/289 (61%), Positives = 219/289 (75%), Gaps = 18/289 (6%)
Query: 122 VVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181
V L D GG KY K+VIVTGANTGIGK +A +LAKR+A+VIMACRD+ KCE
Sbjct: 21 VYLLKDYNGGKKYEGNEKLTDKVVIVTGANTGIGKEVAHDLAKREARVIMACRDMFKCET 80
Query: 182 ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEE 241
ARK++V+++KNKYV CRKCDLASQESIR F + KKE++K+++LINNAGV C K T+E
Sbjct: 81 ARKQIVIDTKNKYVYCRKCDLASQESIRDFVKLFKKEHQKLHILINNAGVMRCPKSQTKE 140
Query: 242 KIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301
IE+QLGVNHMGHFLLT LLLD L+A SAP+RIINVSS+AH R
Sbjct: 141 GIEMQLGVNHMGHFLLTNLLLDTLKA------------------SAPARIINVSSLAHAR 182
Query: 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
G IN DLNS+ +YDP AY QSKLANV+FT ELAKRL+GTG+TVNAVHPGIV+T++ RH
Sbjct: 183 GKINMYDLNSDENYDPAAAYAQSKLANVMFTTELAKRLKGTGVTVNAVHPGIVDTELTRH 242
Query: 362 SSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
YY S S + LKPL+W FI++P+QGAQTI+YA+L P LE V+G+YF+
Sbjct: 243 MGYYTSGFSAIFLKPLIWPFIRTPKQGAQTILYAALSPELEKVTGQYFS 291
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321478548|gb|EFX89505.1| hypothetical protein DAPPUDRAFT_303085 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 173/289 (59%), Positives = 212/289 (73%), Gaps = 18/289 (6%)
Query: 122 VVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181
++L + G +Y + GK VI+TGA GIGK A++LAKR AKV MA RD+ KCE+
Sbjct: 20 IILVKEYFSGTRYEGKEKLDGKTVIITGATDGIGKETAKDLAKRGAKVFMASRDMKKCEE 79
Query: 182 ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEE 241
RKE VLES NK++ CRKCDLASQESIR FA E K+++LINNAG+ C + LT E
Sbjct: 80 IRKEFVLESGNKFIYCRKCDLASQESIRQFASRFNSEESKVDILINNAGIMRCPRSLTSE 139
Query: 242 KIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301
IE+Q+GVNH GHFLLT LLLDKL+ +SAPSRIINVSSVAH R
Sbjct: 140 GIEMQIGVNHFGHFLLTHLLLDKLK------------------QSAPSRIINVSSVAHLR 181
Query: 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
G I+ +DLNSE YDP AY QSKLANVLFTRELAKRLEGTG+TVNA+HPGIVNT+I RH
Sbjct: 182 GKIDFDDLNSEKKYDPAAAYEQSKLANVLFTRELAKRLEGTGVTVNALHPGIVNTNISRH 241
Query: 362 SSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+ +SW ++++LKPL W FI++P +GAQT +YA+LDPSLE V+GKYF+
Sbjct: 242 MGFVNSWFASIILKPLSWPFIRTPPRGAQTTLYAALDPSLEKVTGKYFS 290
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195332181|ref|XP_002032777.1| GM20968 [Drosophila sechellia] gi|194124747|gb|EDW46790.1| GM20968 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/284 (58%), Positives = 215/284 (75%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
D++ G ++T+ET+ GK+ IVTGANTGIGK RE+AKR V MACR+L KCE+AR+E+
Sbjct: 30 DLMQGGQFTKETNETGKVFIVTGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEI 89
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLE+KNKYV CR+CDLASQESIR F K+E + ++VLINNAGV C + LT + IELQ
Sbjct: 90 VLETKNKYVYCRQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQ 149
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
LGVNHMGHFLLT LLL L ++S+PSRI+NVSS+AH RG IN
Sbjct: 150 LGVNHMGHFLLTNLLLGLL------------------KKSSPSRIVNVSSLAHTRGEINT 191
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DLNS+ SYD +AY+QSKLANVLFTRELAKRLEGT +T NA+HPG+V+T+I+RH +++
Sbjct: 192 GDLNSDKSYDEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFFN 251
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
++ + + +KPL W F+K+PR GAQT +Y +LDP LE V+G+YF+
Sbjct: 252 NFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFS 295
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321450649|gb|EFX62582.1| hypothetical protein DAPPUDRAFT_300980 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/284 (60%), Positives = 209/284 (73%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
+ G +Y + GK VI+TGA GIGK A++LAKR AKV MA RD+ KCE+ RKE
Sbjct: 15 EYFSGTRYEGKEKLDGKTVIITGATDGIGKETAKDLAKRGAKVFMASRDMKKCEEIRKEF 74
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLES NK++ CRKCDLASQESIR FA E K+++LINNAG+ C + LT E IE+Q
Sbjct: 75 VLESGNKFIYCRKCDLASQESIRQFASRFNSEESKVDILINNAGIMRCPRSLTSEGIEMQ 134
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
+GVNH GHFLLT LLLDKL+ +SAPSRIINVSSVAH RG I+
Sbjct: 135 IGVNHFGHFLLTHLLLDKLK------------------QSAPSRIINVSSVAHLRGKIDF 176
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
+DLNSE YDP AY QSKLANVLFTRELAKRLEGTG+TVNA+HPGIVNT+I RH + +
Sbjct: 177 DDLNSEKKYDPAAAYEQSKLANVLFTRELAKRLEGTGVTVNALHPGIVNTNISRHMGFVN 236
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
SW ++++LKPL W FI++P +GAQT +YA+LDPSLE V+GKYF+
Sbjct: 237 SWFASIILKPLSWPFIRTPPRGAQTTLYAALDPSLEKVTGKYFS 280
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24586328|ref|NP_610306.1| CG30491, isoform A [Drosophila melanogaster] gi|442622820|ref|NP_001260784.1| CG30491, isoform B [Drosophila melanogaster] gi|21483208|gb|AAM52579.1| AT09608p [Drosophila melanogaster] gi|21645599|gb|AAF59216.3| CG30491, isoform A [Drosophila melanogaster] gi|220949640|gb|ACL87363.1| CG30491-PA [synthetic construct] gi|220958438|gb|ACL91762.1| CG30491-PA [synthetic construct] gi|440214179|gb|AGB93317.1| CG30491, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 216/284 (76%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
D++ G ++T+ET+ GK+ IVTGANTGIGK RE+AKR V MACR+L KCE+AR+E+
Sbjct: 30 DLMQGGQFTKETNETGKVFIVTGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEI 89
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLE+KNKYV CR+CDLASQESIR F K+E + ++VLINNAGV C + LT + IELQ
Sbjct: 90 VLETKNKYVYCRQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQ 149
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
LGVNHMGHFLLT LLLD L ++S+PSRI+NVSS+AH RG IN
Sbjct: 150 LGVNHMGHFLLTNLLLDLL------------------KKSSPSRIVNVSSLAHTRGEINT 191
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DLNS+ SYD +AY+QSKLANVLFTRELAKRLEGT +T NA+HPG+V+T+I+RH +++
Sbjct: 192 GDLNSDKSYDEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFFN 251
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
++ + + +KPL W F+K+PR GAQT +Y +LDP LE V+G+YF+
Sbjct: 252 NFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFS 295
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194863756|ref|XP_001970598.1| GG23291 [Drosophila erecta] gi|190662465|gb|EDV59657.1| GG23291 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 216/284 (76%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
D++ G ++T+ET+ GK+ IVTGANTGIGK RE+AKR V MACR+L KCE+AR+E+
Sbjct: 30 DLMQGGQFTKETNETGKVFIVTGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEI 89
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLE+KNKYV CR+CDLASQESIR F K+E + ++VLINNAGV C + LT + IELQ
Sbjct: 90 VLETKNKYVYCRQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQ 149
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
LGVNHMGHFLLT LLLD L ++S PSRI+NVSS+AH RG IN
Sbjct: 150 LGVNHMGHFLLTNLLLDLL------------------KKSTPSRIVNVSSLAHTRGEINT 191
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DLNS+ SYD +AY+QSKLANVLFTRELAKRLEGT +T NA+HPG+V+T+I+RH ++++
Sbjct: 192 GDLNSDKSYDEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMAFFN 251
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
++ S + +KPL W F+K+P+ GAQT +Y +LDP LE V+G+YF+
Sbjct: 252 NFFSGLFVKPLFWPFVKTPKNGAQTSLYVALDPELEKVTGQYFS 295
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322783281|gb|EFZ10865.1| hypothetical protein SINV_12126 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 211/286 (73%), Gaps = 18/286 (6%)
Query: 124 LRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183
L D +GG KY + K+VIVTGAN+GIGK A ELAKR AKVIMACRD+ KCE R
Sbjct: 24 LTKDYMGGEKYKGKEDLIDKVVIVTGANSGIGKQTALELAKRNAKVIMACRDMGKCETVR 83
Query: 184 KEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKI 243
+++VL++KNKYV CRKCDLASQESIR F + KKE K+++LINNAGV C K TEE I
Sbjct: 84 RDIVLDTKNKYVYCRKCDLASQESIRKFVAQFKKEYNKLHILINNAGVMRCPKSYTEEGI 143
Query: 244 ELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303
E+QLGVNHMGHFLLT LLLD L +ES PSRIIN++S AH+RG
Sbjct: 144 EMQLGVNHMGHFLLTNLLLDVL------------------KESTPSRIINLTSAAHRRGQ 185
Query: 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
IN +DLN EN YD +AY QSKLA +LFTRELA RL+GT +TVNAVHPGIV+T+I RH S
Sbjct: 186 INMQDLNWENDYDAGRAYGQSKLAIILFTRELASRLKGTDVTVNAVHPGIVDTNITRHMS 245
Query: 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409
Y+++ + + LKP W FI++P QGAQT++YA+LDPSL NVSG YF
Sbjct: 246 VYNNFFTRIFLKPFAWPFIRAPLQGAQTVLYAALDPSLTNVSGCYF 291
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195474444|ref|XP_002089501.1| GE19137 [Drosophila yakuba] gi|194175602|gb|EDW89213.1| GE19137 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 166/284 (58%), Positives = 216/284 (76%), Gaps = 18/284 (6%)
Query: 127 DVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
D++ G ++T+ET+ GK+ IVTGANTGIGK RE+AKR V MACR+L KCE+AR+E+
Sbjct: 30 DLMQGGQFTKETNETGKVFIVTGANTGIGKETVREIAKRGGTVYMACRNLKKCEEAREEI 89
Query: 187 VLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
VLE+KNKYV CR+CDLASQESIR F K+E + ++VLINNAGV C + LT + IELQ
Sbjct: 90 VLETKNKYVYCRQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPRSLTSDGIELQ 149
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
LGVNHMGHFLLT L+LD L ++S+PSRI+NVSS+AH RG IN
Sbjct: 150 LGVNHMGHFLLTNLVLDLL------------------KKSSPSRIVNVSSLAHTRGEINT 191
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DLNS+ SYD +AY+QSKLANVLFTRELAKRLEGT +T NA+HPG+V+T+I+RH +++
Sbjct: 192 GDLNSDKSYDEGKAYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFFN 251
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
++ + + +KPL W F+K+PR GAQT +Y +LDP LE V+G+YF+
Sbjct: 252 NFFAGLFVKPLFWPFVKTPRNGAQTSLYVALDPELEKVTGQYFS 295
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| FB|FBgn0050491 | 331 | CG30491 [Drosophila melanogast | 0.331 | 0.429 | 0.559 | 2.5e-83 | |
| FB|FBgn0033205 | 330 | CG2064 [Drosophila melanogaste | 0.331 | 0.430 | 0.566 | 2.9e-74 | |
| FB|FBgn0050495 | 327 | CG30495 [Drosophila melanogast | 0.331 | 0.434 | 0.524 | 1.4e-68 | |
| UNIPROTKB|E2QUH8 | 334 | RDH13 "Uncharacterized protein | 0.328 | 0.422 | 0.496 | 1.1e-62 | |
| UNIPROTKB|Q8NBN7 | 331 | RDH13 "Retinol dehydrogenase 1 | 0.328 | 0.425 | 0.475 | 1.8e-62 | |
| RGD|1304959 | 334 | Rdh13 "retinol dehydrogenase 1 | 0.328 | 0.422 | 0.503 | 4.8e-62 | |
| ZFIN|ZDB-GENE-030131-4716 | 331 | wu:fd55e03 "wu:fd55e03" [Danio | 0.349 | 0.453 | 0.467 | 3.8e-60 | |
| ZFIN|ZDB-GENE-040801-48 | 291 | rdh12l "retinol dehydrogenase | 0.289 | 0.426 | 0.558 | 9.9e-60 | |
| FB|FBgn0029866 | 406 | CG3842 [Drosophila melanogaste | 0.356 | 0.376 | 0.454 | 2.9e-58 | |
| ZFIN|ZDB-GENE-070912-611 | 292 | si:dkey-94e7.2 "si:dkey-94e7.2 | 0.284 | 0.417 | 0.496 | 3.3e-57 |
| FB|FBgn0050491 CG30491 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 80/143 (55%), Positives = 114/143 (79%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLA 327
++ + L NL+ + ++S+PSRI+NVSS+AH RG IN DLNS+ SYD +AY+QSKLA
Sbjct: 154 HMGHFLLTNLL-LDLLKKSSPSRIVNVSSLAHTRGEINTGDLNSDKSYDEGKAYSQSKLA 212
Query: 328 NVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQ 387
NVLFTRELAKRLEGT +T NA+HPG+V+T+I+RH +++++ + + +KPL W F+K+PR
Sbjct: 213 NVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFFNNFFAGLFVKPLFWPFVKTPRN 272
Query: 388 GAQTIVYASLDPSLENVSGKYFA 410
GAQT +Y +LDP LE V+G+YF+
Sbjct: 273 GAQTSLYVALDPELEKVTGQYFS 295
|
|
| FB|FBgn0033205 CG2064 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 81/143 (56%), Positives = 112/143 (78%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLA 327
++ + L NL+ V + SAPSRI+ VSS+AH RG+IN DLNSE SYD AY+QSKLA
Sbjct: 152 HIGHFLLTNLL-LDVLKNSAPSRIVVVSSLAHARGSINVADLNSEKSYDEGLAYSQSKLA 210
Query: 328 NVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQ 387
NVLFTRELAKRLEG+G+TVNA+HPG+V+T++ R+ +++ + L LKP++W +K+P+
Sbjct: 211 NVLFTRELAKRLEGSGVTVNALHPGVVDTELARNWAFFQTNLVKFFLKPMIWPLLKTPKS 270
Query: 388 GAQTIVYASLDPSLENVSGKYFA 410
GAQT +YA+LDP L+N+SG YF+
Sbjct: 271 GAQTSIYAALDPELKNISGLYFS 293
|
|
| FB|FBgn0050495 CG30495 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 75/143 (52%), Positives = 108/143 (75%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLA 327
++ + L NL+ V + SAPSR++ V+S AH+RG I +D+NS + YD AY QSKLA
Sbjct: 154 HIGHFLLTNLL-LGVLERSAPSRVVVVASRAHERGQIKVDDINSSDFYDEGVAYCQSKLA 212
Query: 328 NVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQ 387
N+LFTRELAKRLEGTG+TVNA++PGI +T+I R+ ++ + + +L+PL+W +K+P+
Sbjct: 213 NILFTRELAKRLEGTGVTVNALNPGIADTEIARNMIFFQTKFAQTILRPLLWAVMKTPKN 272
Query: 388 GAQTIVYASLDPSLENVSGKYFA 410
GAQT +YA+LDP LE VSG+YF+
Sbjct: 273 GAQTTLYAALDPDLERVSGQYFS 295
|
|
| UNIPROTKB|E2QUH8 RDH13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 71/143 (49%), Positives = 98/143 (68%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN-SYDPTQAYNQSKL 326
+L + L NL+ + + SAPSRIIN+SS+AH G I+ +DLN E YD AY QSKL
Sbjct: 147 HLGHFLLTNLLLDKL-KASAPSRIINLSSLAHVAGHIDFDDLNWEKRKYDTKAAYCQSKL 205
Query: 327 ANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPR 386
A +LFT+EL++RL+GTG+TVNA+HPG+ T++ RH+ + S S+ L P+ WL +KSP+
Sbjct: 206 AVILFTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWLLVKSPQ 265
Query: 387 QGAQTIVYASLDPSLENVSGKYF 409
AQ Y ++ LE VSGKYF
Sbjct: 266 LAAQPSTYLAVAEELEGVSGKYF 288
|
|
| UNIPROTKB|Q8NBN7 RDH13 "Retinol dehydrogenase 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 68/143 (47%), Positives = 97/143 (67%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN-SYDPTQAYNQSKL 326
+L + L NL+ + + SAPSRIIN+SS+AH G I+ +DLN + Y+ AY QSKL
Sbjct: 147 HLGHFLLTNLLLDKL-KASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKL 205
Query: 327 ANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPR 386
A VLFT+EL++RL+G+G+TVNA+HPG+ T++ RH+ + S S+ L P+ WL +KSP
Sbjct: 206 AIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPE 265
Query: 387 QGAQTIVYASLDPSLENVSGKYF 409
AQ Y ++ L +VSGKYF
Sbjct: 266 LAAQPSTYLAVAEELADVSGKYF 288
|
|
| RGD|1304959 Rdh13 "retinol dehydrogenase 13 (all-trans/9-cis)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 72/143 (50%), Positives = 98/143 (68%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE-NSYDPTQAYNQSKL 326
+L + L NL+ + + SAPSRIIN+SS+AH G I+ EDLN + YD AY QSKL
Sbjct: 147 HLGHFLLTNLLLDKL-KASAPSRIINLSSLAHVAGHIDFEDLNWQIKKYDTKAAYCQSKL 205
Query: 327 ANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPR 386
A VLFT+EL++RL+GTG+TVNA+HPG+ T++ RH+ ++S S +L P WL KSP+
Sbjct: 206 AVVLFTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQ 265
Query: 387 QGAQTIVYASLDPSLENVSGKYF 409
AQ Y ++ LE+VSGKYF
Sbjct: 266 LAAQPSTYLAVAEELESVSGKYF 288
|
|
| ZFIN|ZDB-GENE-030131-4716 wu:fd55e03 "wu:fd55e03" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 73/156 (46%), Positives = 107/156 (68%)
Query: 268 NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLA 327
+L + L NL+ + ++SAPSRI+NV+SVAH+RG IN D+N + YDP Q+Y +SKLA
Sbjct: 162 HLGHFLLTNLL-LDMLKKSAPSRIVNVASVAHERGKINFNDINMDKDYDPYQSYYRSKLA 220
Query: 328 NVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQ 387
NVLFTRELA +L TG+T A+HPG++ T++ RH + + W ++L P + F K+P Q
Sbjct: 221 NVLFTRELAIKLRDTGVTTYALHPGVIRTELGRHV-FSNLWRKLIIL-PF-YFFFKNPWQ 277
Query: 388 GAQTIVYASLDPSLENVSGKYFA-CYDRYEARVDGR 422
GAQT +Y ++D SL++ SG Y++ C + E GR
Sbjct: 278 GAQTTIYCAVDESLKHSSGLYYSDCAPK-ETAPQGR 312
|
|
| ZFIN|ZDB-GENE-040801-48 rdh12l "retinol dehydrogenase 12, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 72/129 (55%), Positives = 93/129 (72%)
Query: 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG 341
+ + SAP+RIINVSS AH+ GTIN ED+NSE +YD +AY QSKLANVLFTR LAKRLEG
Sbjct: 135 LIKRSAPARIINVSSTAHQWGTINLEDINSEKNYDKQKAYCQSKLANVLFTRSLAKRLEG 194
Query: 342 TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSL 401
TG+T ++HPG+V TD+ RH S + KP F K+ QGAQT +Y ++DP+L
Sbjct: 195 TGVTAYSLHPGVVQTDLWRHLSKPQQAVMWFT-KP----FTKTSVQGAQTSIYCAVDPAL 249
Query: 402 ENVSGKYFA 410
+ SGKY++
Sbjct: 250 QTESGKYYS 258
|
|
| FB|FBgn0029866 CG3842 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 70/154 (45%), Positives = 92/154 (59%)
Query: 113 IVNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA 172
IV G+++F +LR + G A Y + GK+VIVTG NTGIGK ELAKR A+V MA
Sbjct: 46 IVLGILLFMWLLRKCIQGPA-YRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYMA 104
Query: 173 CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAXXXXXXXXXXXXXXXXAGVS 232
CRD +CE AR +++ S+N+ + R DL S +S+R F AGV
Sbjct: 105 CRDPGRCEAARLDIMDRSRNQQLFNRTLDLGSLQSVRNFVERFKAEESRLDILINNAGVM 164
Query: 233 GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266
C + LT + E Q GVNH+GHFLLT LLLD+L+
Sbjct: 165 ACPRTLTADGFEQQFGVNHLGHFLLTNLLLDRLK 198
|
|
| ZFIN|ZDB-GENE-070912-611 si:dkey-94e7.2 "si:dkey-94e7.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 64/129 (49%), Positives = 90/129 (69%)
Query: 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG 341
+ + SAPSRIIN+SS+AH GTI +D+NSE +Y +AY QSKLAN+LFTR LAK+L+G
Sbjct: 138 LLKRSAPSRIINLSSMAHSWGTITLDDINSERNYHSRRAYGQSKLANILFTRSLAKKLKG 197
Query: 342 TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSL 401
+T AVHPGIV T++ RH + L +++ +V F K+P QGAQT +Y ++ P L
Sbjct: 198 --VTSYAVHPGIVRTELKRHMN-----LGLLIMWKVVRPFTKTPVQGAQTTIYCAVQPEL 250
Query: 402 ENVSGKYFA 410
+ SG Y++
Sbjct: 251 DAESGGYYS 259
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8NBN7 | RDH13_HUMAN | 1, ., 1, ., 1, ., - | 0.4779 | 0.6433 | 0.8338 | yes | N/A |
| Q8CEE7 | RDH13_MOUSE | 1, ., 1, ., 1, ., - | 0.4915 | 0.6480 | 0.8323 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 429 | |||
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 1e-129 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 1e-118 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 3e-71 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 4e-57 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 9e-57 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 1e-52 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 3e-52 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 5e-49 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 6e-46 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 5e-44 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 1e-40 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 8e-34 | |
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 2e-33 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 7e-33 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 6e-32 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 1e-31 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-31 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-31 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 5e-28 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 2e-27 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 2e-27 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 3e-27 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 1e-26 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 8e-26 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 6e-25 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 6e-25 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-24 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-24 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-24 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 2e-23 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 2e-23 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 4e-23 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 6e-23 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 7e-23 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 3e-22 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 5e-22 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 5e-22 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 5e-22 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 1e-21 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 1e-21 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 1e-21 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 2e-21 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 3e-21 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 6e-21 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 7e-21 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-20 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 2e-20 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 2e-20 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-20 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 2e-20 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 4e-20 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 5e-20 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 6e-20 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 7e-20 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 7e-20 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 8e-20 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 9e-20 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 1e-19 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 1e-19 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 3e-19 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 5e-19 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 7e-19 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 9e-19 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 1e-18 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 1e-18 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 1e-18 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 2e-18 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 4e-18 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 5e-18 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 6e-18 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 8e-18 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 9e-18 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 1e-17 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 1e-17 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 1e-17 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 1e-17 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 2e-17 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 2e-17 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 2e-17 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 2e-17 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 2e-17 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 3e-17 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 4e-17 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 4e-17 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 5e-17 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 6e-17 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 7e-17 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 9e-17 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 1e-16 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 1e-16 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 2e-16 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 2e-16 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 3e-16 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 3e-16 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 3e-16 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 4e-16 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 6e-16 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 7e-16 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 7e-16 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 1e-15 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 1e-15 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 1e-15 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 1e-15 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 1e-15 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 1e-15 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 1e-15 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-15 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 3e-15 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 5e-15 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 5e-15 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 5e-15 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 7e-15 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 8e-15 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 9e-15 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 1e-14 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-14 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 1e-14 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 1e-14 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 1e-14 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 1e-14 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 2e-14 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 3e-14 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 3e-14 | |
| PRK12938 | 246 | PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro | 4e-14 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 5e-14 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 5e-14 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 5e-14 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 6e-14 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 8e-14 | |
| PRK12936 | 245 | PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote | 1e-13 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 1e-13 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 1e-13 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 1e-13 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 2e-13 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 2e-13 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-13 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 2e-13 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 3e-13 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 3e-13 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 4e-13 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 4e-13 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 4e-13 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 5e-13 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 7e-13 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 7e-13 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 9e-13 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 1e-12 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 1e-12 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-12 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 2e-12 | |
| cd05353 | 250 | cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)- | 2e-12 | |
| PRK12481 | 251 | PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog | 3e-12 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 6e-12 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 6e-12 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 7e-12 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 8e-12 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 9e-12 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 1e-11 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 1e-11 | |
| PRK06128 | 300 | PRK06128, PRK06128, oxidoreductase; Provisional | 1e-11 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 2e-11 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 2e-11 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 2e-11 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 4e-11 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 4e-11 | |
| PRK12859 | 256 | PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote | 4e-11 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 4e-11 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 5e-11 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 6e-11 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 6e-11 | |
| cd08936 | 256 | cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re | 6e-11 | |
| TIGR03971 | 265 | TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil | 1e-10 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 1e-10 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 1e-10 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 1e-10 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 1e-10 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-10 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 2e-10 | |
| PRK07577 | 234 | PRK07577, PRK07577, short chain dehydrogenase; Pro | 3e-10 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 3e-10 | |
| PRK08340 | 259 | PRK08340, PRK08340, glucose-1-dehydrogenase; Provi | 5e-10 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 5e-10 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 5e-10 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 6e-10 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 6e-10 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 7e-10 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 7e-10 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 1e-09 | |
| PRK08945 | 247 | PRK08945, PRK08945, putative oxoacyl-(acyl carrier | 1e-09 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 1e-09 | |
| PRK07792 | 306 | PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-09 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 2e-09 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 2e-09 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 6e-09 | |
| cd05322 | 257 | cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy | 6e-09 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 6e-09 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 7e-09 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 1e-08 | |
| PRK12823 | 260 | PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1 | 2e-08 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 2e-08 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 2e-08 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 3e-08 | |
| PRK07831 | 262 | PRK07831, PRK07831, short chain dehydrogenase; Pro | 3e-08 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 3e-08 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 4e-08 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 4e-08 | |
| cd05372 | 250 | cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) | 5e-08 | |
| PRK08993 | 253 | PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog | 7e-08 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 7e-08 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 9e-08 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 1e-07 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 1e-07 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 1e-07 | |
| PRK06940 | 275 | PRK06940, PRK06940, short chain dehydrogenase; Pro | 1e-07 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 2e-07 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-07 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 4e-07 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 6e-07 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 8e-07 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 8e-07 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 9e-07 | |
| PRK07791 | 286 | PRK07791, PRK07791, short chain dehydrogenase; Pro | 2e-06 | |
| PRK05786 | 238 | PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-06 | |
| PRK08339 | 263 | PRK08339, PRK08339, short chain dehydrogenase; Pro | 4e-06 | |
| PRK06483 | 236 | PRK06483, PRK06483, dihydromonapterin reductase; P | 5e-06 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 5e-06 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 5e-06 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 6e-06 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 6e-06 | |
| COG0623 | 259 | COG0623, FabI, Enoyl-[acyl-carrier-protein] | 1e-05 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 1e-05 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 1e-05 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 2e-05 | |
| PRK08251 | 248 | PRK08251, PRK08251, short chain dehydrogenase; Pro | 2e-05 | |
| PRK09291 | 257 | PRK09291, PRK09291, short chain dehydrogenase; Pro | 2e-05 | |
| PRK06101 | 240 | PRK06101, PRK06101, short chain dehydrogenase; Pro | 3e-05 | |
| PRK12428 | 241 | PRK12428, PRK12428, 3-alpha-hydroxysteroid dehydro | 3e-05 | |
| PRK05876 | 275 | PRK05876, PRK05876, short chain dehydrogenase; Pro | 3e-05 | |
| PRK07985 | 294 | PRK07985, PRK07985, oxidoreductase; Provisional | 6e-05 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 7e-05 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 9e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 1e-04 | |
| PLN02780 | 320 | PLN02780, PLN02780, ketoreductase/ oxidoreductase | 1e-04 | |
| PRK05875 | 276 | PRK05875, PRK05875, short chain dehydrogenase; Pro | 2e-04 | |
| cd01078 | 194 | cd01078, NAD_bind_H4MPT_DH, NADP binding domain of | 2e-04 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 2e-04 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 3e-04 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 3e-04 | |
| PRK08303 | 305 | PRK08303, PRK08303, short chain dehydrogenase; Pro | 5e-04 | |
| PRK08416 | 260 | PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydro | 9e-04 | |
| cd11730 | 206 | cd11730, Tthb094_like_SDR_c, Tthb094 and related p | 0.001 | |
| cd08928 | 248 | cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reducta | 0.001 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 0.001 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 0.002 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 0.002 | |
| COG1748 | 389 | COG1748, LYS9, Saccharopine dehydrogenase and rela | 0.002 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 0.003 | |
| pfam13561 | 239 | pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote | 0.003 | |
| PRK09134 | 258 | PRK09134, PRK09134, short chain dehydrogenase; Pro | 0.003 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 372 bits (958), Expect = e-129
Identities = 155/269 (57%), Positives = 193/269 (71%), Gaps = 19/269 (7%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK VI+TGANTGIGK ARELA+R A+VIMACRD+ KCE+A E+ ++ N V+ R D
Sbjct: 1 GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
LAS +SIRAFA E E +++VLINNAGV C TE+ E+Q GVNH+GHFLLT LL
Sbjct: 61 LASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQFGVNHLGHFLLTNLL 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
LD L+ SAPSRI+NVSS+AHK G IN +DLNSE SY+ AY
Sbjct: 121 LDLLKK------------------SAPSRIVNVSSLAHKAGKINFDDLNSEKSYNTGFAY 162
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
QSKLANVLFTRELA+RL+GTG+TVNA+HPG+V T++ RH+ + +LST +L PL W F
Sbjct: 163 CQSKLANVLFTRELARRLQGTGVTVNALHPGVVRTELGRHTGIHHLFLST-LLNPLFWPF 221
Query: 382 IKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+K+PR+GAQT +Y +L LE VSGKYF+
Sbjct: 222 VKTPREGAQTSIYLALAEELEGVSGKYFS 250
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-118
Identities = 139/273 (50%), Positives = 182/273 (66%), Gaps = 27/273 (9%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V++TGAN+GIGK ARELAKR A VI+ACR+ +K E+A E+ E+ N V + D
Sbjct: 1 GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L+S S+R FAEE ++++LINNAG+ + LT++ ELQ VN++GHFLLT LL
Sbjct: 61 LSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFLLTNLL 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN--SYDPTQ 319
L L+A SAPSRI+NVSS+AH+ G I+ DL+ EN Y P +
Sbjct: 121 LPVLKA------------------SAPSRIVNVSSIAHRAGPIDFNDLDLENNKEYSPYK 162
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
AY QSKLAN+LFTRELA+RLEGTG+TVNA+HPG+V T++LR S +L L+
Sbjct: 163 AYGQSKLANILFTRELARRLEGTGVTVNALHPGVVRTELLRR------NGSFFLLYKLLR 216
Query: 380 LFIK-SPRQGAQTIVYASLDPSLENVSGKYFAC 411
F+K SP QGAQT +YA+ P LE VSGKYF+
Sbjct: 217 PFLKKSPEQGAQTALYAATSPELEGVSGKYFSD 249
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 3e-71
Identities = 105/284 (36%), Positives = 148/284 (52%), Gaps = 35/284 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTGANTG+G A LA + A V++A R+LDK + A + + V ++ D
Sbjct: 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELD 75
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L S S+RA A+ ++ +I++LINNAGV K T + ELQ G NH+GHF LT LL
Sbjct: 76 LTSLASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLL 135
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAP-SRIINVSSVAHK-RGTINKEDLNSENSYDPTQ 319
LD+L P SR++ VSS H+ R I+ +DL E Y+
Sbjct: 136 LDRLLP-------------------VPGSRVVTVSSGGHRIRAAIHFDDLQWERRYNRVA 176
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAV--HPGIVNTDILRHSSYYDSWLSTVVLKPL 377
AY QSKLAN+LFT EL +RL G T AV HPG+ NT++ R+ L +
Sbjct: 177 AYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARN-------LPRALRPVA 229
Query: 378 VWL---FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418
L +SP GA + A+ DP++ G+Y+ E R
Sbjct: 230 TVLAPLLAQSPEMGALPTLRAATDPAVR--GGQYYGPDGFGEQR 271
|
Length = 306 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-57
Identities = 93/271 (34%), Positives = 126/271 (46%), Gaps = 30/271 (11%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK IVTG +G+G R LA+ A VI+ R D +A + V D
Sbjct: 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
LA ES+RAFAE ++I++LINNAGV C + + E Q NH+GHF L LL
Sbjct: 80 LADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLL 139
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L A A +R++ +SS H+R I +D + YD AY
Sbjct: 140 WPALAA------------------GAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWLAY 181
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD----SWLSTVVLKPL 377
QSK AN LF L K + G+ +VHPG + T + RH + W+ P+
Sbjct: 182 GQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHG-NPI 240
Query: 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKY 408
F K+P QGA T V+A+ P L + G Y
Sbjct: 241 DPGF-KTPAQGAATQVWAATSPQLAGMGGLY 270
|
Length = 315 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 9e-57
Identities = 103/277 (37%), Positives = 146/277 (52%), Gaps = 33/277 (11%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK++I+TGAN+GIG AR A A VI+ACR++ + A ++ E V D
Sbjct: 1 GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
LAS S++ FAE K +N ++VL+ NA V LTE+ +E VNH+GHF L LL
Sbjct: 61 LASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETTFQVNHLGHFYLVQLL 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN--------SEN 313
D V + SAP+R+I VSS +H+ + N +
Sbjct: 121 ED------------------VLRRSAPARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKK 162
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRHSSYYDSWLSTV 372
Y AYN++KL N+LF+ EL +RL GIT N++HPG ++ + I H ++ W+ T
Sbjct: 163 KYWSMLAYNRAKLCNILFSNELHRRLSPRGITSNSLHPGNMMYSSI--HRNW---WVYT- 216
Query: 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409
+L L F KS +QGA T VY + P LE + G YF
Sbjct: 217 LLFTLARPFTKSMQQGAATTVYCATAPELEGLGGMYF 253
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 1e-52
Identities = 86/222 (38%), Positives = 122/222 (54%), Gaps = 22/222 (9%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK +VTGA+ G+G +AR LA A+VI+ R+ K E A + + + R
Sbjct: 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRAL 72
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV-SGCRKMLTEEKIELQLGVNHMGHFLLTM 259
DL+S S+ A E+++ E + I++LINNAGV + + T + ELQ G NH+GHF LT
Sbjct: 73 DLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTA 132
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LL L+A +R+ + SS+A +RG IN +DLN E SY +
Sbjct: 133 HLLPLLRA-------------------GRARVTSQSSIAARRGAINWDDLNWERSYAGMR 173
Query: 320 AYNQSKLANVLFTRELAKR--LEGTGITVNAVHPGIVNTDIL 359
AY+QSK+A LF EL +R G GIT N HPG+ T++L
Sbjct: 174 AYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLL 215
|
Length = 313 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 3e-52
Identities = 98/299 (32%), Positives = 147/299 (49%), Gaps = 55/299 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
V++TGA++G+G A A+ LA+R V+MACRD K E+A +EV + K+ Y CD
Sbjct: 2 GTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMP-KDSYS-VLHCD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLLT 258
LAS +S+R F + ++ + ++ L+ NA V + T + EL +GVNH+GHFLLT
Sbjct: 60 LASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLT 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI-----NKEDLNS-- 311
LLL+ LQ + E+A RI+ V S+ H T+ + L
Sbjct: 120 NLLLEDLQRS----------------ENASPRIVIVGSITHNPNTLAGNVPPRATLGDLE 163
Query: 312 --------------ENSYDPTQAYNQSKLANVLFTRELAKRL-EGTGITVNAVHPG-IVN 355
++ +AY SK+ N+L T EL +RL E TGIT N+++PG I
Sbjct: 164 GLAGGLKGFNSMIDGGEFEGAKAYKDSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAE 223
Query: 356 TDILRHSSYYDSWLSTVVLKPLVWLFI----KSPRQGAQTIVYASLDPSLENVSGKYFA 410
T + R + T L P +I S + + + DPSL VSG Y++
Sbjct: 224 TGLFRE---HYPLFRT--LFPPFQKYITKGYVSEEEAGERLAAVIADPSL-GVSGVYWS 276
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 5e-49
Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 37/258 (14%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+VTGA++GIG+AIAR LA+ AKV++A R+ + + L V + D++
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIEALGGNAVAV---QADVSD 57
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTMLLL 262
+E + A EE +E ++++L+NNAG++ + LT+E + L VN G FLLT L
Sbjct: 58 EEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAAL 117
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
+ ++ RI+N+SSVA R + AY
Sbjct: 118 PHM------------------KKQGGGRIVNISSVAGLRPLPGQA------------AYA 147
Query: 323 QSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFI 382
SK A TR LA L GI VNAV PG+V+T +L ++ PL +
Sbjct: 148 ASKAALEGLTRSLALELAPYGIRVNAVAPGLVDTPMLAKLGPEEAEKELAAAIPL--GRL 205
Query: 383 KSPRQGAQTIVYASLDPS 400
+P + A+ +V+ + D +
Sbjct: 206 GTPEEVAEAVVFLASDEA 223
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 6e-46
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 46/288 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA++GIG+AIAR LA+ A+V++A R ++ +A + E+
Sbjct: 5 GKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAA 64
Query: 201 DLASQ-ESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFL 256
D++ ES+ A ++E +I++L+NNAG++G L TEE + + VN +G FL
Sbjct: 65 DVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFL 124
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT L ++ RI+N+SSVA G +
Sbjct: 125 LTRAALPLMKK---------------------QRIVNISSVAGLGGPPGQA--------- 154
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
AY SK A + T+ LA L GI VNAV PG ++T + + +
Sbjct: 155 ---AYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAELEALKRLAAR 211
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFS 424
+ + +P + A + + + D + ++G+ VDG
Sbjct: 212 IPLGRLGTPEEVAAAVAFLASDEAASYITGQTL--------PVDGGLL 251
|
Length = 251 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 5e-44
Identities = 81/273 (29%), Positives = 122/273 (44%), Gaps = 58/273 (21%)
Query: 143 KIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGAN GIG I R+LAK VI+ RD+++ + A ++ L ++ V + D
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEK--LRAEGLSVRFHQLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
+ SI A A+ V+++ +++L+NNAG++ T E+ + N G +T
Sbjct: 59 VTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVT 118
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
LL L+ + A RI+NVSS +
Sbjct: 119 QALLPLLK-----------------KSPAG-RIVNVSSGLGSLTS--------------- 145
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378
AY SK A TR LAK L+ TGI VNA PG V TD+ +
Sbjct: 146 -AYGVSKAALNALTRILAKELKETGIKVNACCPGWVKTDM----GGGKAP---------- 190
Query: 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411
K+P +GA+T VY +L P +GK+F+
Sbjct: 191 ----KTPEEGAETPVYLALLPPDGEPTGKFFSD 219
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-40
Identities = 86/276 (31%), Positives = 139/276 (50%), Gaps = 42/276 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ ++TGAN+GIGKA A +AKR V M CR+ + E+ARKE+ ES N+ + D
Sbjct: 1 GRSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ + + F EE K+E KK++VLINNAG ++ LTE+ +E N +G ++LT L
Sbjct: 61 MSDPKQVWEFVEEFKEEGKKLHVLINNAGCMVNKRELTEDGLEKNFATNTLGTYILTTHL 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS-YDPTQA 320
+ V ++ R+I VSS +N +L SE + +D T
Sbjct: 121 IP------------------VLEKEEDPRVITVSSGGMLVQKLNTNNLQSERTAFDGTMV 162
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR------HSSYYDSWLSTVVL 374
Y Q+K V+ T + AK+ I + +HPG +T +R H+ + D
Sbjct: 163 YAQNKRQQVIMTEQWAKK--HPEIHFSVMHPGWADTPAVRNSMPDFHARFKDR------- 213
Query: 375 KPLVWLFIKSPRQGAQTIVYASLDPS-LENVSGKYF 409
++S QGA T+V+ +L + + SG+++
Sbjct: 214 -------LRSEEQGADTVVWLALSSAAAKAPSGRFY 242
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 8e-34
Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 50/248 (20%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
VI+TGA++G+G A+ LAKR VIMACR+L K E A +E+ + + ++ DL
Sbjct: 9 VIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTII--HIDLGD 66
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE-----EKIELQLGVNHMGHFLLTM 259
+S+R F ++ + K ++ L+ NA V L E + EL + NH+GHFLL
Sbjct: 67 LDSVRRFVDDFRALGKPLDALVCNAAVYMPL--LKEPLRSPQGYELSMATNHLGHFLLCN 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR----GTIN---KEDLN-- 310
LLL+ L+ + + R++ + +V G I DL
Sbjct: 125 LLLEDLKKS----------------PAPDPRLVILGTVTANPKELGGKIPIPAPADLGDL 168
Query: 311 --------------SENSYDPTQAYNQSKLANVLFTRELAKRL-EGTGITVNAVHPGIV- 354
+ P +AY SKL N+L REL +R E TGIT ++++PG V
Sbjct: 169 SGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVA 228
Query: 355 NTDILRHS 362
+T + R++
Sbjct: 229 DTPLFRNT 236
|
Length = 322 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-33
Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 49/245 (20%)
Query: 146 IVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
I+TGA++G+G A A+ LA+ K V+MACRD K E+A K + K+ Y + DLAS
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM-PKDSYTVM-HLDLAS 58
Query: 205 QESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+S+R F + ++ + ++VL+ NA V + T + EL +G NH+GHFLL+ LL
Sbjct: 59 LDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLL 118
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTI--------NKEDL--- 309
LD L+ PS R+I V S+ T+ N DL
Sbjct: 119 LDDLKK-----------------SDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGL 161
Query: 310 ----NSENS--------YDPTQAYNQSKLANVLFTRELAKRL-EGTGITVNAVHPG-IVN 355
N NS +D +AY SK+ N+L +E +R E TGIT +++PG I
Sbjct: 162 AGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221
Query: 356 TDILR 360
T + R
Sbjct: 222 TGLFR 226
|
Length = 308 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-33
Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 35/222 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G++ +VTGA GIG+AIA LA A+VI+ D + V R+
Sbjct: 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGK--ARARQV 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK--MLTEEKIELQLGVNHMGHFLLT 258
D+ + +++A ++ ++++L+ NAG+ + +E+ E + VN G FLLT
Sbjct: 63 DVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + RI+ SSVA R P
Sbjct: 123 QAAL--------PA----------LIRAGGGRIVLTSSVAGPRVGY------------PG 152
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
A Y SK V FTR LA L ITVN+VHPG V+T +
Sbjct: 153 LAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMA 194
|
Length = 251 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 6e-32
Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 45/245 (18%)
Query: 145 VIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
VI+TGA++G+G A+ LA + VIMACRD K E+A K + + K+ Y + DL
Sbjct: 6 VIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM-PKDSYTIM-HLDLG 63
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLLTML 260
S +S+R F ++ ++ + ++ L+ NA V + T + EL +G NH+GHFLL L
Sbjct: 64 SLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNL 123
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTIN-----KEDLN----- 310
LLD L+ + + R+I V S+ T+ K +L
Sbjct: 124 LLDDLKNS----------------PNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGL 167
Query: 311 -----------SENSYDPTQAYNQSKLANVLFTRELAKRL-EGTGITVNAVHPG-IVNTD 357
+ +AY SK+ N+L REL +R + TGIT +++PG I +T
Sbjct: 168 AAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTG 227
Query: 358 ILRHS 362
+ R
Sbjct: 228 LFREH 232
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 38/222 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA+ GIG+AIA LA AKV + R + + +E+ N L + D+
Sbjct: 1 KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIKALGGNAAAL--EADV 58
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTM 259
+ +E++ A E+V+ E +++L+NNAG++ +M +EE + + VN G F +T
Sbjct: 59 SDREAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRM-SEEDWDAVINVNLTGVFNVTQ 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ + R RIIN+SSV G Q
Sbjct: 118 AVIRAMIKR--RS----------------GRIINISSVVGLIGNPG-------------Q 146
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y SK + FT+ LAK L GITVNAV PG ++TD+
Sbjct: 147 ANYAASKAGVIGFTKSLAKELASRGITVNAVAPGFIDTDMTD 188
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 44/261 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTGA+ GIG+AIA LA AKV++ + + E E L + D
Sbjct: 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAE--LRAAGGEARVLVFD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ + ++RA E + +++L+NNAG++ + ++EE + + VN G F +
Sbjct: 63 VSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVR 122
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + RY RI+N+SSV+ G Q
Sbjct: 123 AALPPMIKA--RY----------------GRIVNISSVSGVTGNPG-------------Q 151
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLKP 376
Y+ +K + FT+ LA L GITVNAV PG ++TD+ L + L
Sbjct: 152 TNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEIPLGR 211
Query: 377 LVWLFIKSPRQGAQTIVY-AS 396
L P + A + + AS
Sbjct: 212 LG-----QPEEVANAVAFLAS 227
|
Length = 246 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 8e-31
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 37/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ IVTGA+ GIG+AIA LAK AKV++A D E+A +E++ ++ + + K
Sbjct: 5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIA---YDINEEAAQELLEEIKEEGGDAIAVK 61
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D++S+E + E++ ++ KI++L+NNAG+S + +T+E+ + + VN G LL
Sbjct: 62 ADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLL 121
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L + S I+N+SS+ G L +
Sbjct: 122 TRYALPYMIKRKS------------------GVIVNISSI---WG------LIGASC--- 151
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ SK A FT+ LAK L +GI VNAV PG ++T++
Sbjct: 152 EVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWS 194
|
Length = 247 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-28
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 39/221 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV-VLESKNKYVLCRKC 200
GK+ +VTGA+ GIG+AIA LA + A V++ + A V + + L +
Sbjct: 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEA--GAEALVAEIGALGGKALAVQG 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
D++ ES+ +E K E +++L+NNAG+ + +M EE + + N G F L
Sbjct: 63 DVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRM-KEEDWDRVIDTNLTGVFNL 121
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T +A ++R + + RIIN+SSV G +P
Sbjct: 122 T-------KA-VARPMM----------KQRSGRIINISSVVGLMG-------------NP 150
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK + FT+ LA+ L GITVNAV PG + TD
Sbjct: 151 GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETD 191
|
Length = 248 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLA 203
+VTGA+ GIG+AIA +LAK AKVI+ R + E+ +E L++ L CD++
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEE--LKAYGVKALGVVCDVS 58
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLLTM 259
+E ++A EE+++E I++L+NNAG++ R L EE + + N G F LT
Sbjct: 59 DREDVKAVVEEIEEELGPIDILVNNAGIT--RDNLLMRMKEEDWDAVIDTNLTGVFNLTQ 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+L + R RIIN+SSV G + Q
Sbjct: 117 AVLRIMIKQ--RS----------------GRIINISSVVGLMG-------------NAGQ 145
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y SK + FT+ LAK L ITVNAV PG ++TD
Sbjct: 146 ANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTD 184
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 72/273 (26%), Positives = 105/273 (38%), Gaps = 52/273 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+V++TG ++GIG A+A LA + +VI R+ DK E E N + + D+
Sbjct: 1 KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLG-----ELLNDNLEVLELDV 55
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLTM 259
+ESI+A +EV + +I+VL+NNAG G L + E++ VN G +T
Sbjct: 56 TDEESIKAAVKEVIERFGRIDVLVNNAGY-GLFGPLEETSIEEVRELFEVNVFGPLRVTR 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + ++ RI+NVSSVA T P
Sbjct: 115 AFLP------------------LMRKQGSGRIVNVSSVAGLVPT-------------PFL 143
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----------SYYDSW 368
Y SK A + L L GI V + PG V T ++ S Y
Sbjct: 144 GPYCASKAALEALSESLRLELAPFGIKVTIIEPGPVRTGFADNAAGSALEDPEISPYAPE 203
Query: 369 LSTVVLKPLVWLFIK-SPRQGAQTIVYASLDPS 400
+ P + A IV A S
Sbjct: 204 RKEIKENAAGVGSNPGDPEKVADVIVKALTSES 236
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 67/219 (30%), Positives = 95/219 (43%), Gaps = 38/219 (17%)
Query: 145 VIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
V++TGA+ GIG + R+L R VI CRD + S+ + + D+
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAALGASHSRLHIL---ELDVT 57
Query: 204 S--QESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
ES A AE + + ++VLINNAG+ E + VN +G LLT
Sbjct: 58 DEIAESAEAVAERLG--DAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLT 115
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L A ++IIN+SS + G+I D S Y
Sbjct: 116 QAFLPLLLK------------------GARAKIINISS---RVGSIG--DNTSGGWY--- 149
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+Y SK A + T+ LA L+ GITV ++HPG V TD
Sbjct: 150 -SYRASKAALNMLTKSLAVELKRDGITVVSLHPGWVRTD 187
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 41/234 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTGA G+G A A LA+ A V D E LE+ D
Sbjct: 7 GKRALVTGAARGLGAAFAEALAEAGATVAFN--DGLAAEARELAAALEAAGGRAHAIAAD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
LA S++ F + ++ L+NNAG++ + L + + + VN G FL+
Sbjct: 65 LADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLML- 123
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+A L ++S RI+N++S G
Sbjct: 124 ------RAALPH-----------LRDSGRGRIVNLASDTALWGAPK------------LG 154
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL-------RHSSYYD 366
AY SK A + TR LA+ L G GITVNA+ PG+ T+ RH+ Y
Sbjct: 155 AYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLK 208
|
Length = 250 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-26
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 48/254 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK ++TGA++GIG +A++LA+R +I+ R DK E KE+ ++ + V
Sbjct: 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVE-VEVIPA 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
DL+ E++ +E+K+ I+VL+NNAG G L+ ++ E + +N + LT
Sbjct: 64 DLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L + + + IIN+ S A PT
Sbjct: 124 KAVLPGMVERGAGH------------------IINIGSAA---------------GLIPT 150
Query: 319 ---QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI-------LRHSSYYDSW 368
Y+ +K + F+ L + L+GTG+ V AV PG T+ + S +
Sbjct: 151 PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDVYLLSPGELV 210
Query: 369 LS--TVVLKPLVWL 380
LS V L L
Sbjct: 211 LSPEDVAEAALKAL 224
|
Length = 265 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-25
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 35/217 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK +VTG + G+G IA L + A+V+++ R ++ E+A LE+ L
Sbjct: 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAH--LEALGIDALWIAA 68
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKMLTE----EKIELQLGVNHMGHF 255
D+A + I AEE + +++L+NNAG + G E E + + +N G F
Sbjct: 69 DVADEADIERLAEETLERFGHVDILVNNAGATWGAP---AEDHPVEAWDKVMNLNVRGLF 125
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
LL+ QA R RIINV+SVA G E ++
Sbjct: 126 LLS-------QAVAKRS----------MIPRGYGRIINVASVAGLGGN-PPEVMD----- 162
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
T AYN SK A + FTR LA GI VNA+ PG
Sbjct: 163 --TIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPG 197
|
Length = 259 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR--KCD 201
IV++TG +GIG+ +A E AKR AKV++ LD EK +E + KCD
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAKVVI----LDINEKGAEETANNVRKAGGKVHYYKCD 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ +E + A+++KKE + +LINNAGV +K+L +E+IE VN + HF T
Sbjct: 57 VSKREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWTTK 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + + I+ ++SVA D
Sbjct: 117 AFLPDMLERNHGH------------------IVTIASVAGLISPAGLAD----------- 147
Query: 320 AYNQSKLANVLF----TRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y SK A V F EL K GI V P +NT + +
Sbjct: 148 -YCASKAAAVGFHESLRLEL-KAYGKPGIKTTLVCPYFINTGMFQG 191
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 37/227 (16%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
S G++ +VTGA G+G+AIA LA+ A V++ R D + E+ + V +
Sbjct: 2 GSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRR--AQ 59
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGH 254
+ D+ + ++ A + +I++L+NNAG+ + + +++++ + + VN G
Sbjct: 60 AVQADVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGV 119
Query: 255 FLLT-MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F L ++ + R RI+N+SSVA G +
Sbjct: 120 FHLLRAVVPPMRKQ---RGG----------------RIVNISSVAGLPGWPGR------- 153
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K V T+ LA+ L GITVN V PG ++TD+
Sbjct: 154 -----SNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKE 195
|
Length = 249 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 53/270 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCD 201
K+ I+TG +GIG A A+ L K+ AKV + R+ + + + + K +V +CD
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAILDRNENPGAAAELQAINPKVKATFV---QCD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ S E + A ++ ++ ++++LINNAG+ + L E + VN G
Sbjct: 58 VTSWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVINT 117
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L L + N I+N+ SVA P
Sbjct: 118 TYLALHYMDKNKGG---------------KGGVIVNIGSVA---------------GLYP 147
Query: 318 ---TQAYNQSKLANVLFTRELAKRLE-GTGITVNAVHPGIVNTDILRH--SSYYDSWLST 371
Y+ SK V FTR LA LE TG+ VNA+ PG NT +L + + S
Sbjct: 148 APQFPVYSASKHGVVGFTRSLADLLEYKTGVRVNAICPGFTNTPLLPDLVAKEAEMLPSA 207
Query: 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSL 401
SP A+ IVY D
Sbjct: 208 PTQ---------SPEVVAKAIVYLIEDDEK 228
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-24
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 40/225 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTGA++GIG+ IAR A A+V++ R+ + E+ E++ + V D
Sbjct: 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAV---AAD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKML--TEEKIELQLGVNHMGHFLLT 258
++ + + A + +++L+NNAG + +L E + + VN +L T
Sbjct: 62 VSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWT 121
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA--HKRGTINKEDLNSENSYD 316
+ + I+NV+S A R +
Sbjct: 122 QAAVP------------------AMRGEGGGAIVNVASTAGLRPRPGLG----------- 152
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
YN SK A + T+ LA L I VNAV P +V T +L
Sbjct: 153 ---WYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEA 194
|
Length = 251 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-23
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S +GK+ +VTGA+ GIG IA LA+ A +++ R+ +K E+A++ + E
Sbjct: 2 SLKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKEGVE--ATAF 59
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
CD++ +E+I+A E ++++ KI++L+NNAG+ E + + VN G F
Sbjct: 60 TCDVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFF 119
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
++ + + +IIN+ S L SE
Sbjct: 120 VSQAV------------------ARHMIKQGHGKIINICS------------LLSELGGP 149
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
P AY SK T+ LA GI VNA+ PG T++
Sbjct: 150 PVPAYAASKGGVAGLTKALATEWARHGIQVNAIAPGYFATEMTEAV 195
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-23
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 34/218 (15%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S GKIV+VTG + GIG+ IA+ + A+VI++ R + C A +E+ + Y C
Sbjct: 3 SVAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEEL-----SAYGECI 57
Query: 199 K--CDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGH 254
DL+S+E I A V + + +++VL+NNAG + + E + + +N
Sbjct: 58 AIPADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINVKSV 117
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F LT LL L+A + P+R+IN+ S+A + +
Sbjct: 118 FFLTQALLPLLRAAAT--------------AENPARVINIGSIAGIVVS-------GLEN 156
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y +Y SK A TR+LAK L G ITVNA+ PG
Sbjct: 157 Y----SYGASKAAVHQLTRKLAKELAGEHITVNAIAPG 190
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-23
Identities = 74/244 (30%), Positives = 104/244 (42%), Gaps = 46/244 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+ K V+VTGAN GIGKA L A KV A RD + +V + +K V R
Sbjct: 2 KDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPG----SAAHLVAKYGDKVVPLR- 56
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFL 256
D+ ESI+A A + K ++V+INNAGV +L E +E ++ VN G
Sbjct: 57 LDVTDPESIKAAAAQA----KDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFG--- 109
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LL QA V + + I+N++SVA S ++
Sbjct: 110 ----LLRLAQAFAP-----------VLKANGGGAIVNLNSVA------------SLKNFP 142
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV---V 373
Y+ SK A T+ L L G V +VHPG ++T + + TV V
Sbjct: 143 AMGTYSASKSAAYSLTQGLRAELAAQGTLVLSVHPGPIDTRMAAGAGGPKESPETVAEAV 202
Query: 374 LKPL 377
LK L
Sbjct: 203 LKAL 206
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 6e-23
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 47/255 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA+ GIG IAR LA+ +V + R+ + V D
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSAS------GGDVEAVPYDA 54
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTML 260
E RA + ++ +I+VL++NAG+ + ++ ++E +N + LT
Sbjct: 55 RDPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTRA 114
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
LL L +E+ R++ ++S++ KR L N+
Sbjct: 115 LLPAL------------------REAGSGRVVFLNSLSGKRV------LAG-NA-----G 144
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380
Y+ SK A L + G+ V+AV PG V+T + + L+ V P
Sbjct: 145 YSASKFALRALAHALRQEGWDHGVRVSAVCPGFVDTPMAQ-------GLTLVGAFPP--E 195
Query: 381 FIKSPRQGAQTIVYA 395
+ P+ A +
Sbjct: 196 EMIQPKDIANLVRMV 210
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 7e-23
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 38/239 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
T+ +GK+ ++TGA++GIG+A AR LA+ AKV++A R ++ E + E L
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLE----ALADEIGAGAALA 57
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
D+ + ++ A E + +E +I++L+NNAG++ + + + + N G
Sbjct: 58 LALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLL 117
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
T +L + S + IIN+ S+A Y
Sbjct: 118 NGTRAVLPGMVERKSGH------------------IINLGSIA------------GRYPY 147
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL--RHSSYYDSWLSTV 372
Y +K A F+ L + L GTGI V + PG+V T D V
Sbjct: 148 PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKV 206
|
Length = 246 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 3e-22
Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 49/286 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTGA +GIG AIAR LA A V++ + E A K + V+ D
Sbjct: 1 GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDAGGS--VIYLPAD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++ I E +++L+NNAG+ + E + + V F
Sbjct: 59 VTKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAFHTIR 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + ++ RIIN++S + K
Sbjct: 119 AALPHM------------------KKQGWGRIINIASAHGLVASPFK------------S 148
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR---------HSSYYDSWLS 370
AY +K + T+ LA + GITVNA+ PG V T ++ + +
Sbjct: 149 AYVAAKHGLIGLTKVLALEVAEHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIR 208
Query: 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLE------NVSGKYFA 410
V+LK + + A+T +Y + D + + + G + A
Sbjct: 209 EVMLKGQPTKRFVTVDEVAETALYLASDAAAQITGQAIVLDGGWTA 254
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-22
Identities = 70/225 (31%), Positives = 99/225 (44%), Gaps = 49/225 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA+ GIG+AIA+ LA+ A V++ E+ E +E+ + +
Sbjct: 3 GKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAE--IEAAGGKAIAVQA 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
D++ + + +K +++L+NNAGV +EE+ + VN G F
Sbjct: 61 DVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGAFF-- 118
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSEN 313
V QE+A RIIN+SS
Sbjct: 119 -----------------------VLQEAAKRLRDGGRIINISSSLTA------------- 142
Query: 314 SYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+Y P AY SK A FTR LAK L G GITVNAV PG V+TD
Sbjct: 143 AYTPNYGAYAGSKAAVEAFTRVLAKELGGRGITVNAVAPGPVDTD 187
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-22
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VT A++GIG AIAR LA+ A+V + R+ + E+A E L + VL D
Sbjct: 1 GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASE--LRAGGAGVLAVVAD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
L E I E+ ++++L+NNAG LT+E + + +
Sbjct: 59 LTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIRIVR 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+L ++ W RI+N+SS+ K P
Sbjct: 119 AVLPGMKER---------GW---------GRIVNISSLTVKE---------------PEP 145
Query: 320 AY---NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
N ++ + + L++ L G+TVN+V PG ++T+ +R
Sbjct: 146 NLVLSNVARAGLIGLVKTLSRELAPDGVTVNSVLPGYIDTERVR 189
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 5e-22
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 36/241 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+ ++TGA+ GIG AIARE A V++ RD D +AR E+ E + V
Sbjct: 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D++ E RA + V+ +++L+NNAG + + + TE++ N F
Sbjct: 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAF--- 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
LSRY+ + + ++ A S I+N+ SV+ L S P
Sbjct: 125 ---------ELSRYA------HPLLKQHASSAIVNIGSVS---------GLTHVRSGAP- 159
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT----DILRHSSYYDSWLSTVVL 374
Y +K A + TR LA GI VNAV P + T L YY+ + +
Sbjct: 160 --YGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPM 217
Query: 375 K 375
+
Sbjct: 218 R 218
|
Length = 257 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 44/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA++GIGKAIA LA A V++ R D E+ +E+ ++ + +
Sbjct: 3 GKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEI--KAVGGKAIAVQA 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D++ +E + A + KE +++L+NNAG+ G +T E + VN G FL
Sbjct: 61 DVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFLCA 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKR----GTINKEDLNSEN 313
+ + R F++S +IIN+SSV H++ G +N
Sbjct: 121 -------REAIKR-----------FRKSKIKGKIINMSSV-HEKIPWPGHVN-------- 153
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
Y SK + T+ LA+ GI VNA+ PG +NT I
Sbjct: 154 -------YAASKGGVKMMTKTLAQEYAPKGIRVNAIAPGAINTPI 191
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 37/222 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+VI+TGA++GIG+ +A LA+ A+++++ R ++ E+ + E LE
Sbjct: 2 QGKVVIITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSE-CLELGAPSPHVVPL 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG---VNHMGHFLL 257
D++ E EE K +++LINNAG+S R + + I++ VN+ G L
Sbjct: 61 DMSDLEDAEQVVEEALKLFGGLDILINNAGIS-MRSLFHDTSIDVDRKIMEVNYFGPVAL 119
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L L I+ VSS+A K G P
Sbjct: 120 TKAALPHLIERSQ------------------GSIVVVSSIAGKIGV-------------P 148
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ AY SK A F L L I+V V PG+++T+I
Sbjct: 149 FRTAYAASKHALQGFFDSLRAELSEPNISVTVVCPGLIDTNI 190
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-21
Identities = 62/218 (28%), Positives = 86/218 (39%), Gaps = 36/218 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G V+VTG +GIG+AIA A+ A+V + D E A V D
Sbjct: 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVC----DVSEAALAATAARLPGAKVTATVAD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLT 258
+A + + + ++VL+NNAG++G +T E+ E L VN G F
Sbjct: 67 VADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFA 126
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L+A+ II +SSVA + G Y
Sbjct: 127 RAAVPLLKAS-----------------GHGGVIIALSSVAGRLG------------YPGR 157
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y SK A V + LA L GI VNA+ PGIV
Sbjct: 158 TPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRG 195
|
Length = 264 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA +GIG IA LAK AKV++A + + A L+ + D
Sbjct: 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA--AEALQKAGGKAIGVAMD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMGHFLLT 258
+ +E+I A + + +++L+NNAG V+ T EK + + + G FL T
Sbjct: 62 VTDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPT-EKWKKMIAIMLDGAFLTT 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++A RIIN++SV G+ K
Sbjct: 121 KAALPIMKAQGG------------------GRIINMASVHGLVGSAGK------------ 150
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K + T+ +A G+TVNA+ PG V+T ++R
Sbjct: 151 AAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVR 192
|
Length = 258 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 50/228 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G V++TG +GIG A+AR+ + VI+ R ++ +A+KE + D
Sbjct: 5 GNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEAKKE------LPNIHTIVLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEE---------KIELQLGVNHM 252
+ ES+ A AE + E +++LINNAG+ + K + ++ N +
Sbjct: 59 VGDAESVEALAEALLSEYPNLDILINNAGI-----QRPIDLRDPASDLDKADTEIDTNLI 113
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
G L L L+ E+ I+NVSS +
Sbjct: 114 GPIRLIKAFLPHLKKQP---------------EAT---IVNVSSGL------------AF 143
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A +T L +L+ TG+ V + P V+T++
Sbjct: 144 VPMAANPVYCATKAALHSYTLALRHQLKDTGVEVVEIVPPAVDTELHE 191
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 6e-21
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 34/218 (15%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K V++TGA++GIG+A AR AK AK+I+ R ++ ++ E+ + K VL + D+
Sbjct: 1 KTVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFPVK-VLPLQLDV 59
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +ESI A E + +E + I++L+NNAG++ G E E + N G +T
Sbjct: 60 SDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNVTR 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L+L + A + IIN+ S+A + Y
Sbjct: 120 LILPIMIARNQGH------------------IINLGSIAGR------------YPYAGGN 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K A F+ L K L GTGI V + PG+V T+
Sbjct: 150 VYCATKAAVRQFSLNLRKDLIGTGIRVTNIEPGLVETE 187
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 7e-21
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG +GIG AIA A + A+V + R D E A + L N L CD
Sbjct: 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ---LLGGNAKGL--VCD 69
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ +S+ A V +I++L+N+AGV+ ++EE + + +N G FL+
Sbjct: 70 VSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMA- 128
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
QA + R + +I+N++S A G + + +
Sbjct: 129 ------QA-VGR----------HMIAAGGGKIVNLASQA---GVV---------ALERHV 159
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
AY SK V T+ LA GITVNA+ P +V T++
Sbjct: 160 AYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTEL 198
|
Length = 255 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-20
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
S +GK ++TGA GIG+A+A LAK V + R + + +E +E+ V+
Sbjct: 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEE--VEAYGVKVVI 60
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
D++ E + A E++K E I++LINNAG+S K L + E + VN MG +
Sbjct: 61 ATADVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVY 120
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
T R L ++I E IIN+SS A ++G
Sbjct: 121 YAT------------RAVLPSMI------ERQSGDIINISSTAGQKGAAV---------- 152
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
T AY+ SK + T L + + I V A+ P V TD+
Sbjct: 153 --TSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDM 193
|
Length = 239 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 70/220 (31%), Positives = 90/220 (40%), Gaps = 40/220 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
RGK+V +TG GIG A AR LA A+V A DLD E KE E V+
Sbjct: 4 RGKVVAITGGARGIGLATARALAALGARV--AIGDLD--EALAKETAAELGL--VVGGPL 57
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D+ S AF + V+ + I+VL+NNAGV L + L VN G L +
Sbjct: 58 DVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGS 117
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + R ++NV+S+A K P
Sbjct: 118 KLA---APRMVPRGR---------------GHVVNVASLAGKIPV-------------PG 146
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y SK A V FT L GTG+ V+ V P VNT+
Sbjct: 147 MATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTE 186
|
Length = 273 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 43/231 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V+VTGA +GIG+ A A+ A+V+ + D E+ + + + +
Sbjct: 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHA--YRV 371
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMG--HFL 256
D++ +++ AFAE V+ E+ ++++NNAG+ L + E + L VN G H
Sbjct: 372 DVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHG- 430
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
C L + + I+NV+S A +Y
Sbjct: 431 ------------------CRLFGRQMVERGTGGHIVNVASAA---------------AYA 457
Query: 317 PTQ---AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
P++ AY SK A ++ + L L GI V A+ PG V+T+I+ + +
Sbjct: 458 PSRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRF 508
|
Length = 582 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-20
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 48/225 (21%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ ++TG GIG+AIA + AKV + + E KE+ + K V KC
Sbjct: 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAV---LYNSAENEAKEL----REKGVFTIKC 58
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT-------EEKIELQLGVNHMG 253
D+ +++ ++ E V+KE +++VL+NNAG+ M EEK + +N G
Sbjct: 59 DVGNRDQVKKSKEVVEKEFGRVDVLVNNAGI-----MYLMPFEEFDEEKYNKMIKINLNG 113
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
T L L+ S I+N++S A GT +
Sbjct: 114 AIYTTYEFLPLLKL------------------SKNGAIVNIASNA-GIGTAAEG------ 148
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
T Y +K ++ TR LA L GI VNAV PG V TD+
Sbjct: 149 ----TTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDM 189
|
Length = 255 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-20
Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 44/229 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TG +GIG+A AR AK A+V++A D+D + A + V E + + CD
Sbjct: 4 GKVAIITGGASGIGEATARLFAKHGARVVIA--DID--DDAGQAVAAELGDPDISFVHCD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG--CRKML--TEEKIELQLGVNHMGHFLL 257
+ + +RA + +++++ NNAGV G C +L + E+ E L VN G FL
Sbjct: 60 VTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFLG 119
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR---IINVSSVAHKRGTINKEDLNSENS 314
T K A + P++ I++V+SVA G +
Sbjct: 120 T-----KHAARV----------------MIPAKKGSIVSVASVAGVVGGLG--------- 149
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
AY SK A + TR A L GI VN V P V T +L
Sbjct: 150 ---PHAYTASKHAVLGLTRSAATELGEHGIRVNCVSPYGVATPLLTAGF 195
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-20
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 43/226 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +VTG GIG IAR LA + I D ++ ++E L + V+ D
Sbjct: 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQE--LRALGVEVIFFPAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGHFLL 257
+A + A + + +I+ L+NNAGV + LT E + L +N G F L
Sbjct: 61 VADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFL 120
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T ML + + R I+ VSSV + N+ +
Sbjct: 121 TQAVAKRMLAQPEPEELPHR------------------SIVFVSSVNAIMVSPNRGE--- 159
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y SK + + A RL GI V V PG++ TD
Sbjct: 160 ---------YCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTD 196
|
Length = 256 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 5e-20
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 40/225 (17%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
A+ ++V+VTGA GIG+A + A+ +V++A R++++ + R + + +
Sbjct: 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARE-RADSLGPDHHALA---- 57
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGH 254
D++ + IR E++ +E +I+VL+NNAGV+ M T E+ +N G
Sbjct: 58 MDVSDEAQIREGFEQLHREFGRIDVLVNNAGVTD-PTMTATLDTTLEEFARLQAINLTGA 116
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L+ +A L A I+NV+S A +
Sbjct: 117 YLVAR------EA---------LRLMIEQGHGAA--IVNVASGAGLVALPKR-------- 151
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
AY+ SK A + TR LA GI VNAV PG V T ++
Sbjct: 152 ----TAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMV 192
|
Length = 520 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-20
Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 40/238 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN-KYVLCRKC 200
GK+ I+TG+++GIG A A+ A++ + RD ++ E+ R+ + + K +L
Sbjct: 3 GKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVVA 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
DL +E + ++++L+NNAG+ + ++ IE + +N L
Sbjct: 63 DLTEEEGQDRIISTTLAKFGRLDILVNNAGILA-KGGGEDQDIEEYDKVMNLNLRAVIYL 121
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L + L I+NVSSVA R S+
Sbjct: 122 TKLAVPHLIK-------------------TKGEIVNVSSVAGGR------------SFPG 150
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----SYYDSWLST 371
Y SK A FTR A L G+ VN+V PG++ T R Y +LS
Sbjct: 151 VLYYCISKAALDQFTRCTALELAPKGVRVNSVSPGVIVTGFHRRMGMPEEQYIKFLSR 208
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-20
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 32/224 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI+IVTG ++GIG AI +EL A V+ A D+ + +++ D
Sbjct: 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNA--DIHGGDG---------QHENYQFVPTD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++S E + E+ ++ +I+ L+NNAG++ R +L +EK + G + L
Sbjct: 58 VSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPR-LLVDEK-------DPAGKYELNEAA 109
Query: 262 LDKLQA-NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
DK+ N L + + I+N+SS A G SE
Sbjct: 110 FDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEG--------SEGQ----SC 157
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
Y +K A FTR AK L I V V PGI+ LR Y
Sbjct: 158 YAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEY 201
|
Length = 266 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 7e-20
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 40/233 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTGA GIG A A LA+ A+V++A D A + VV + + R D
Sbjct: 3 GKVAIVTGAGAGIGAACAARLAREGARVVVADIDGG----AAQAVVAQIAGGALALR-VD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
+ ++ + A E +E +++L+NNAG + + + + + +N G FL
Sbjct: 58 VTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCC 117
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
R++ +I I+N+SS+A + G
Sbjct: 118 ------------RHAAPRMI------ARGGGSIVNLSSIAGQSGDPG------------Y 147
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371
AY SK A TR LA L GI NA+ PG+++T +L + +
Sbjct: 148 GAYGASKAAIRNLTRTLAAELRHAGIRCNALAPGLIDTPLLL--AKLAGFEGA 198
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-20
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 36/219 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
K+ I+TGA GIG+AIA LA +++A DL+ E+A K + + +
Sbjct: 2 SKVAIITGAAQGIGRAIAERLAADGFNIVLA--DLNL-EEAAKSTIQEISEAGYNAVAVG 58
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D+ ++ + A ++ ++ +V++NNAG++ +L TEE ++ VN G
Sbjct: 59 ADVTDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVNVFGVLF- 117
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+QA + +IIN SS+A +G N
Sbjct: 118 ------GIQAAAR----------QFKKLGHGGKIINASSIAGVQGFPN------------ 149
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY+ SK A T+ A+ L GITVNA PGIV T
Sbjct: 150 LGAYSASKFAVRGLTQTAAQELAPKGITVNAYAPGIVKT 188
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 9e-20
Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 42/266 (15%)
Query: 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVL 196
E S +GK+V +TG G+G+A A LA R A+V + R + V + +
Sbjct: 2 EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV---PADALRI 58
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGH 254
DL ++ R +EV ++ +++ L+N AG V G + + GVN
Sbjct: 59 GG-IDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVN---- 113
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+ T L N S+ +L L S RI+N+ + A +
Sbjct: 114 -VKTTL-------NASKAALPALT------ASGGGRIVNIGAGAALKAGPG--------- 150
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS---SYYDSWLST 371
AY +K T LA L GITVNAV P I++T R + + W++
Sbjct: 151 ---MGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMPDADFSRWVTP 207
Query: 372 VVLKPLVWLFIKSPRQGAQTIVYASL 397
+ ++ F+ S AQ I AS+
Sbjct: 208 EQIAAVI-AFLLSD--EAQAITGASI 230
|
Length = 239 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-19
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA++G+G A+ LA+ AKV++A R +++ ++ R E+ E +V+ D
Sbjct: 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVV--SLD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +SI+A + E I++L+NN+GVS +K++ T + N G F +
Sbjct: 67 VTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQ 126
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ ++R RIIN++SVA R
Sbjct: 127 EVAKRM---IARAKGAGNTK-------PGGRIINIASVAGLR------------VLPQIG 164
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y SK A V TR +A GI VNA+ PG ++T+I H
Sbjct: 165 LYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHH 206
|
Length = 258 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-19
Identities = 66/247 (26%), Positives = 99/247 (40%), Gaps = 45/247 (18%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD---LDKCEKARKEVVLESKNKYV 195
+ GK +VTG GIG AI ELA A+V R+ LD+C K V
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTE-----WREKGFKV 57
Query: 196 LCRKCDLASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKML--TEEKIELQLGVNHM 252
CD++S+ + + V K+N+L+NNAG + ++ TEE L + N
Sbjct: 58 EGSVCDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFE 117
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
+ +LSR + + + + S I+ +SSVA G I + S
Sbjct: 118 AAY------------HLSRLA------HPLLKASGNGNIVFISSVA---GVI---AVPSG 153
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI----LRHSSYYDSW 368
Y T+ A TR LA I VNAV P ++ T + ++ D
Sbjct: 154 APYGATKG------ALNQLTRSLACEWAKDNIRVNAVAPWVIATPLVEPVIQQKENLDKV 207
Query: 369 LSTVVLK 375
+ LK
Sbjct: 208 IERTPLK 214
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 3e-19
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +VTG+ +GIG IAR LA A +++ +A + + VL
Sbjct: 1 KGKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVKVLYHGA 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
DL+ +I +++ +++L+NNAG+ + EK + + +N F T
Sbjct: 61 DLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAVFHTT 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L ++ W RIIN++SV + NK
Sbjct: 121 RLALPHMKKQG---------W---------GRIINIASVHGLVASANK------------ 150
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K V T+ +A GTG+T NA+ PG V T ++
Sbjct: 151 SAYVAAKHGVVGLTKVVALETAGTGVTCNAICPGWVLTPLVE 192
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 33/241 (13%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S +GK+ IVTG + GIG AIAR LA+ A V + + E+ +E+ +
Sbjct: 5 SLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELA-KKYGVKTKAY 63
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
KCD++SQES+ ++++K+ KI++LI NAG++ + L T E+ + VN G F
Sbjct: 64 KCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVF- 122
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
N ++ + +F++ +I +S++ GTI
Sbjct: 123 -----------NCAQAAA------KIFKKQGKGSLIITASMS---GTIVNRPQPQ----- 157
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSWLSTVVL 374
AYN SK A + + LA I VN++ PG ++TD+ W S + L
Sbjct: 158 --AAYNASKAAVIHLAKSLAVEWAKYFIRVNSISPGYIDTDLTDFVDKELRKKWESYIPL 215
Query: 375 K 375
K
Sbjct: 216 K 216
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-19
Identities = 67/216 (31%), Positives = 89/216 (41%), Gaps = 32/216 (14%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++ +VTGA +GIG AIAR L K +V + R + KE+ R CD+
Sbjct: 4 EVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREAGVE--ADGRTCDV 61
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTML 260
S I A I+VL+NNAG SG L +E + N G F +T
Sbjct: 62 RSVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELADELWLDVVETNLTGVFRVTKE 121
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+L E RIIN++S K+G ++
Sbjct: 122 VLKAGG----------------MLERGTGRIINIASTGGKQGVVH------------AAP 153
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y+ SK V FT+ L L TGITVNAV PG V T
Sbjct: 154 YSASKHGVVGFTKALGLELARTGITVNAVCPGFVET 189
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 9e-19
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +TG TGIGKAIA+ A+ A V +A R + E A +E+ + + +C
Sbjct: 2 KGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSATGGR-AHPIQC 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMGHFLL 257
D+ E++ A +E KE KI++LINNA ++ L+ + + ++ G F
Sbjct: 61 DVRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAES-LSPNGFKTVIDIDLNGTFNT 119
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T + +L + I+N+S+ G+ P
Sbjct: 120 TKAVGKRL-----------------IEAKHGGSILNISATYAYTGS-------------P 149
Query: 318 TQAYNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Q ++ + A V TR LA GI VNA+ PG + T
Sbjct: 150 FQVHSAAAKAGVDALTRSLAVEWGPYGIRVNAIAPGPIPTT 190
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-18
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY--VLCRK 199
GK V++TG ++GIGKA+A+EL K A VI+ R K E+A +E+ E+ V
Sbjct: 1 GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYIS 60
Query: 200 CDLASQESI-RAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFL 256
DL+ E + +AFA+ V+K ++++N AG+S LT E+ E + VN+ G
Sbjct: 61 ADLSDYEEVEQAFAQAVEK-GGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFG--- 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
N++ L + +E P I+ VSS A G Y
Sbjct: 117 ---------SLNVAHAVLPLM------KEQRPGHIVFVSSQAALVGIYG---------Y- 151
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A L + L+ I V+ V+P +T
Sbjct: 152 --SAYCPSKFALRGLAESLRQELKPYNIRVSVVYPPDTDT 189
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 42/230 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G + +VTG +G+G A L + AKV++ DL L ++V D
Sbjct: 2 GLVAVVTGGASGLGLATVERLLAQGAKVVIL--DLPN-SPGETVAKLGDNCRFV---PVD 55
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS------GCRKMLTE--EKIELQLGVNHMG 253
+ S++ ++A K + ++++++N AG++ + E + + VN +G
Sbjct: 56 VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR--IINVSSVAHKRGTINKEDLNS 311
F + L + N + R IIN +SVA G I +
Sbjct: 116 TFNVIRLAAGAMGKNEP--------------DQGGERGVIINTASVAAFEGQIGQ----- 156
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY+ SK V T +A+ L GI V + PG+ +T +L
Sbjct: 157 -------AAYSASKGGIVGMTLPIARDLAPQGIRVVTIAPGLFDTPLLAG 199
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 1e-18
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 37/226 (16%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK--YV 195
GK+ IVTG GIGKAI LA+ AKV++ + + ++A + +V E + V
Sbjct: 2 VQLNGKVAIVTGGAKGIGKAITVALAQEGAKVVI---NYNSSKEAAENLVNELGKEGHDV 58
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMG 253
+ D++ E EE K+++L+NNAG++ R K L E E + VN
Sbjct: 59 YAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSS 118
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F T +L + E+ RII++SS+ + G + +
Sbjct: 119 VFNTTSAVLPYI------------------TEAEEGRIISISSIIGQAGGFGQTN----- 155
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y+ +K + FT+ LA L T +TVNA+ PG ++T+++
Sbjct: 156 -------YSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMV 194
|
Length = 247 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-18
Identities = 70/220 (31%), Positives = 97/220 (44%), Gaps = 37/220 (16%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV-VLESKNKYVLCRKCDL 202
+ IVTG GIGKAIA LAK A V++A DL K E A ++ + +C++
Sbjct: 1 VAIVTGGAAGIGKAIAGTLAKAGASVVIA--DL-KSEGAEAVAAAIQQAGGQAIGLECNV 57
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM---LTEEKIELQLGVNHMGHFLLTM 259
S++ + A + + I +L+NNAG G + +TEE E +N F L+
Sbjct: 58 TSEQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLSQ 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + Q++ I+N+SS++ SEN
Sbjct: 118 LCAPHM------------------QKAGGGAILNISSMS------------SENKNVRIA 147
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
AY SK A TR LA L GI VNAV PG V TD L
Sbjct: 148 AYGSSKAAVNHMTRNLAFDLGPKGIRVNAVAPGAVKTDAL 187
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-18
Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
S +GK+ ++TG + GIG AIA L KV + RD + E+A E+ + VL
Sbjct: 2 MSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL---NNKGNVLG 58
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
D+ + ++ + + ++VLI NAGV + LT E+ L + N G F
Sbjct: 59 LAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAF 118
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ L+ IIN+SS+A N +
Sbjct: 119 YTIKAAVPALKRG-------------------GGYIINISSLAGT------------NFF 147
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-SYYDSW 368
AYN SK V F+ L GI V+ + PG V T H+ S D+W
Sbjct: 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPSEKDAW 201
|
Length = 237 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 5e-18
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA GIG+ IAR A+ A +I+ + EK E+ + D
Sbjct: 6 GKTALITGALQGIGEGIARVFARHGANLILLDIS-PEIEKLADELC--GRGHRCTAVVAD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLL 257
+ S+ A + K++ +I++L+NNAGV CR +++E + + +N G +
Sbjct: 63 VRDPASVAAAIKRAKEKEGRIDILVNNAGV--CRLGSFLDMSDEDRDFHIDINIKGVW-- 118
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
N+++ L +I RI+ +SSV G + DP
Sbjct: 119 ----------NVTKAVLPEMI------ARKDGRIVMMSSVT---GDM---------VADP 150
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
+ AY +K A V T+ LA +GI VNA+ PG V T
Sbjct: 151 GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRT 190
|
Length = 263 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-18
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 36/218 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++TGA +GIG+A+A A+V++A + A E + V D
Sbjct: 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALE--IGPAAIAV---SLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ Q+SI + I++L NNA + +L + + + VN G F L
Sbjct: 61 VTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFL-- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+QA + ++ +IIN++S A +RG E L S
Sbjct: 119 -----MQAVARH----------MVEQGRGGKIINMASQAGRRG----EALVS-------- 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K A + +T+ A L GI VNA+ PG+V+T
Sbjct: 152 HYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTP 189
|
Length = 257 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 8e-18
Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 66/277 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI +VTGA+ GIG+AIA+ LA++ A VI++ R LD C+ +V L C
Sbjct: 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA--CH 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ E I A +++ + ++++L+NNA + + GH L T L
Sbjct: 66 IGEMEQIDALFAHIRERHGRLDILVNNAAAN-----------------PYFGHILDTDLG 108
Query: 262 -LDK-LQANLSRYSLCNLIWYYVFQESAP-------SRIINVSSV-----AHKRGTINKE 307
K + N+ Y +++ E+ I+NV+SV +G
Sbjct: 109 AFQKTVDVNIRGY-------FFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGI---- 157
Query: 308 DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD----ILRHSS 363
Y+ +K A + T+ AK GI VNA+ PG+ +T + ++ +
Sbjct: 158 -------------YSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDA 204
Query: 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPS 400
L+ + L+ P + A ++Y + D S
Sbjct: 205 ILKQALAHIPLRR-----HAEPSEMAGAVLYLASDAS 236
|
Length = 252 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 9e-18
Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 44/227 (19%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL---DKCEKARKEVVLESKNKYV-- 195
GK+ VTGA+ GIG+AIA LAK A V++A + D +E + +
Sbjct: 2 SGKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEA 61
Query: 196 -----LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQL 247
L D+ ++ +RA E + ++++L+NNAG S ++ +L
Sbjct: 62 AGGQALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPA-KRFDLMQ 120
Query: 248 GVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKE 307
VN G +LL+ L + V I+N+S
Sbjct: 121 RVNLRGTYLLSQAALP----------------HMVKAGQG--HILNISPPL--------- 153
Query: 308 DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
S AY K T LA L GI VN++ P
Sbjct: 154 ---SLRPARGDVAYAAGKAGMSRLTLGLAAELRRHGIAVNSLWPSTA 197
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 49/226 (21%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK------YVL 196
K+ ++TGA+TGIG+A A LA+ A V+ D+ +A E V + K+ Y +
Sbjct: 7 KVAVITGASTGIGQASAIALAQEGAYVL--AVDI---AEAVSETVDKIKSNGGKAKAYHV 61
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ---LGVNHMG 253
D++ ++ ++ FA E+K++ +++VL NNAGV + E +++ + V+ G
Sbjct: 62 ----DISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRG 117
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
FL+T +LL + IIN SS + + DL
Sbjct: 118 TFLMTKMLLPLMMEQ-------------------GGSIINTSSFSGQ-----AADLYR-- 151
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
YN +K A + FT+ +A GI NA+ PG + T ++
Sbjct: 152 -----SGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLV 192
|
Length = 272 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
KI +VTGA GIG AIAREL +VI + C K E ++++ L D+
Sbjct: 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKE-LDV 61
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTML 260
E E+++E +++L+NNAG++ K ++ ++ + N F +T
Sbjct: 62 TDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQP 121
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L ++C + RIIN+SSV +G +
Sbjct: 122 LFA---------AMCEQGY---------GRIINISSVNGLKGQFGQ------------TN 151
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y+ +K + FT+ LA GITVN + PG + T
Sbjct: 152 YSAAKAGMIGFTKALASEGARYGITVNCIAPGYIAT 187
|
Length = 245 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 146 IVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
IVTGA+ GIG+AIA ELA R + I D D+ + EV+ + + + D+
Sbjct: 5 IVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRR--AIYFQADIGE 62
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGHFLLTML 260
A ++ ++ +++ L+NNAG++ + LTE+ + + +N G F LT
Sbjct: 63 LSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLTQA 122
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSR-IINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ R P R II V+S+ + N+ +
Sbjct: 123 VARRMVEQPDR-------------FDGPHRSIIFVTSINAYLVSPNRGE----------- 158
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
Y SK + TR LA RL GI V+ + PG+++TD+
Sbjct: 159 -YCISKAGLSMATRLLAYRLADEGIAVHEIRPGLIHTDM 196
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-17
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 42/223 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+VI+TGA+ GIG+A+A LA+ A++++A R+ + +E L L D
Sbjct: 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQE--LADHGGEALVVPTD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-----LGVNHMGHFL 256
++ E+ E I++L+NNAG++ + +E +L + VN++G
Sbjct: 59 VSDAEACERLIEAAVARFGGIDILVNNAGITMWSRF--DELTDLSVFERVMRVNYLGAVY 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
T L L+A+ +I+ VSS+A G
Sbjct: 117 CTHAALPHLKAS-------------------RGQIVVVSSLAGLTGV------------- 144
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
PT+ Y SK A F L L G+ V V PG V TDI
Sbjct: 145 PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDI 187
|
Length = 263 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 39/223 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA--RKEVVLESKNKYVLCRKC 200
+I +VTG GIG AI + LAK +V C ++ +A +++ L + V +
Sbjct: 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVV---EG 57
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
D++S ES +A +V+ E I+VL+NNAG+ + +KM T E+ + N F +
Sbjct: 58 DVSSFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKM-TYEQWSAVIDTNLNSVFNV 116
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T ++D + +E RIIN+SSV ++G + +
Sbjct: 117 TQPVIDGM------------------RERGWGRIINISSVNGQKGQFGQTN--------- 149
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K + FT+ LA+ G+TVN + PG + TD++
Sbjct: 150 ---YSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM 189
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V++TGA++GIG+A A ++A+ A V + R+ + ++ E+ +K CD
Sbjct: 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI--RAKGGTAHAYTCD 428
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS 232
L ++ +++ E+ ++ L+NNAG S
Sbjct: 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAGRS 459
|
Length = 657 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 47/224 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V+VTGAN GIG+A +L R A KV A RD + VV L +
Sbjct: 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVV-------PL--QL 56
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLL 257
D+ S+ A AE + +L+NNAG+ +L E+ + ++ N+ G +
Sbjct: 57 DVTDPASVAAAAEAA----SDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAM 112
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
L AN I+NV SV +N +L
Sbjct: 113 ARAFAPVLAAN------------------GGGAIVNVLSVL---SWVNFPNLG------- 144
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y+ SK A T+ L L G V VHPG ++TD+
Sbjct: 145 --TYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG 186
|
Length = 238 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 30/218 (13%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI+++TGA IGKA + L A++I+A + E+ ++E+ KN+ V+ + D
Sbjct: 2 DKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNR-VIALELD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKM--LTEEKIELQLGVNHMGHFL 256
+ S+ESI+ E ++ +I++LINNA S + E+ L VN G FL
Sbjct: 61 ITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFL 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI--NKEDLNSENS 314
+ QA L F++ IIN++S+ G I + +
Sbjct: 121 CS-------QA------FIKL-----FKKQGKGSIINIASI---YGVIAPDFRIYENTQM 159
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y P + Y+ K + T+ LAK TGI VNA+ PG
Sbjct: 160 YSPVE-YSVIKAGIIHLTKYLAKYYADTGIRVNAISPG 196
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 36/219 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K V++TGA+ GIG+A+A LA A++++ R+ +K E + + D
Sbjct: 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGR---HRWVVAD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
L S+ A +E INVLINNAGV+ + E IE L +N LT
Sbjct: 62 LTSEAGREAVLARA-REMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTR 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LL L+A Q SA ++NV S G+I Y
Sbjct: 121 ALLPLLRA----------------QPSA--MVVNVGSTF---GSI---------GYPGYA 150
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+Y SK A F+ L + L TG+ V + P T +
Sbjct: 151 SYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAM 189
|
Length = 263 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-17
Identities = 57/226 (25%), Positives = 88/226 (38%), Gaps = 47/226 (20%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+VTG + GIGKAIA LA+R A V++ R + E K V+ R D++
Sbjct: 1 ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEIEELGGKAVVVR-ADVSQ 59
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTMLLL 262
+ + VK+ +++VL++NA R + LT + ++ N
Sbjct: 60 PQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCA---- 115
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAP-------SRIINVSSVAHKRGTINKEDLNSENSY 315
Q++A RI+ +SS+ R +
Sbjct: 116 ---------------------QQAAKLMRERGGGRIVAISSLGSIR------------AL 142
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
A +K A R LA L GI VNAV PG+++TD L H
Sbjct: 143 PNYLAVGTAKAALEALVRYLAVELGPRGIRVNAVSPGVIDTDALAH 188
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-17
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 56/223 (25%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIGKA A+ LA A V++A D + E A E+ L CD
Sbjct: 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAEL---GGPDRALGVACD 478
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ + +++A EE ++++++NAG+ SG + ++E VN GHFL
Sbjct: 479 VTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFL--- 535
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAP--------SRIINVSSVAHKRGTINKEDLNS 311
V +E+ I+ ++S
Sbjct: 536 ----------------------VAREAVRIMKAQGLGGSIVFIASK-------------- 559
Query: 312 ENSYDPTQ---AYNQSKLANVLFTRELAKRLEGTGITVNAVHP 351
N+ +P AY +K A + R+LA L GI VN V+P
Sbjct: 560 -NAVNPGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNP 601
|
Length = 681 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-17
Identities = 73/264 (27%), Positives = 110/264 (41%), Gaps = 50/264 (18%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK--YVLCRKCD 201
+V++TGA++GIG+A A A+R AKV++A R +A E+ E + + D
Sbjct: 2 VVVITGASSGIGRATALAFAERGAKVVLAARS----AEALHELAREVRELGGEAIAVVAD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+A + A+ + +I+ +NNAGV+ G + +T E+ VN++GH T+
Sbjct: 58 VADAAQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTL 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
A L + +INV S+ R P Q
Sbjct: 118 -------AALPH-----------LRRRGGGALINVGSLLGYRSA-------------PLQ 146
Query: 320 A-YNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHS-SYYDSWLSTVVLK 375
A Y+ SK A FT L L G I+V V P +NT H+ SY K
Sbjct: 147 AAYSASKHAVRGFTESLRAELAHDGAPISVTLVQPTAMNTPFFGHARSYMGK-------K 199
Query: 376 PLVWLFIKSPRQGAQTIVYASLDP 399
P I P + A+ IV A+ P
Sbjct: 200 PKPPPPIYQPERVAEAIVRAAEHP 223
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 5e-17
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 53/265 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++TGA++GIGKA A AK + + R D E E L S DL
Sbjct: 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAE--LRSTGVKAAAYSIDL 64
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG-------VNHMGHF 255
++ E+I E+ ++ +VLINNAG++ T +E+ L +N F
Sbjct: 65 SNPEAIAPGIAELLEQFGCPDVLINNAGMA-----YTGPLLEMPLSDWQWVIQLNLTSVF 119
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+L ++A L IINVSS+A + N++
Sbjct: 120 QCCSAVLPGMRAR-----GGGL-------------IINVSSIA------------ARNAF 149
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
AY SK A FT+ LA+ GI V + G VNT + + + + +L
Sbjct: 150 PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETVQADFDRSAML- 208
Query: 376 PLVWLFIKSPRQGAQTIVYASLDPS 400
SP Q AQTI++ + P
Sbjct: 209 --------SPEQVAQTILHLAQLPP 225
|
Length = 241 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 76/299 (25%), Positives = 119/299 (39%), Gaps = 61/299 (20%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
++V++TGA+ G+G+A AR A+R AKV++ R + E E+ + L
Sbjct: 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEI--RAAGGEALAV 62
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
D+A E+++A A+ ++E I+ +NNA V+ G + +T E+ V ++G
Sbjct: 63 VADVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVH 122
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
T+ A L + II V S R
Sbjct: 123 GTL-------AALRH-----------MRPRDRGAIIQVGSALAYRSI------------- 151
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLE----GTGITVNAVHPGIVNTDILRHS-SYYDSWLS 370
P Q AY +K A FT L R E G+ ++V V P VNT + S
Sbjct: 152 PLQSAYCAAKHAIRGFTDSL--RCELLHDGSPVSVTMVQPPAVNTPQFDWARSRLP---- 205
Query: 371 TVVLKPLVWLFIKSPRQGAQTIVYASL---------DPSLENVSGKYFA--CYDRYEAR 418
V +P+ ++ P A I+YA+ P+ + G A DRY AR
Sbjct: 206 -VEPQPVPPIY--QPEVVADAILYAAEHPRRELWVGGPAKAAILGNRLAPGLLDRYLAR 261
|
Length = 334 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 7e-17
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ IVTGA +GIG+A A+ A+ A+V++A RD + E+ + + R+ D
Sbjct: 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGR---AFARQGD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHFLLTM 259
+ S E++ A + V +++VL+NNAG ++T E + + VN G FL
Sbjct: 62 VGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLW-- 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++Y++ + Q I+N +S + + +
Sbjct: 120 ----------AKYAIP------IMQRQGGGSIVNTAS----QLALAGGRGRA-------- 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
AY SK A TR +A GI VNAV PG ++T R
Sbjct: 152 AYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRI 194
|
Length = 252 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 9e-17
Identities = 62/225 (27%), Positives = 86/225 (38%), Gaps = 58/225 (25%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V+VTGA++GIG+A A LA+R A+V+ A R+ ++ E E L D
Sbjct: 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCE-----PLR--LD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +IRA + L+N AG++ L T E + + VN G L
Sbjct: 62 VGDDAAIRAAL----AAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAAL--- 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSR--------IINVSSVAHKRGTINKEDLNS 311
V + A + I+NVSS A G
Sbjct: 115 ----------------------VARHVARAMIAAGRGGSIVNVSSQAALVGL-------- 144
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A TR L L GI VN+V+P + T
Sbjct: 145 ----PDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLT 185
|
Length = 245 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR--KEVVLESKNKYVLCR 198
+GK ++TG ++GIG+A+A A+ A V + ++ + A K+++ E K +L
Sbjct: 25 KGKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEE-DDAEETKKLIEEEGRKCLLIP 83
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEEKIELQLGVNHMGHF 255
DL + R +EV KE K+++L+NNA + +T E++E N F
Sbjct: 84 G-DLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITTEQLEKTFRTNIFSMF 142
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
LT L L+ S IIN +SV +Y
Sbjct: 143 YLTKAALPHLKKG--------------------SSIINTTSV---------------TAY 167
Query: 316 DPTQA---YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
+ Y +K A V FTR L+ +L GI VNAV PG + T
Sbjct: 168 KGSPHLLDYAATKGAIVAFTRGLSLQLAEKGIRVNAVAPGPIWT 211
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-16
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ IVTGA GIG+A A LA+ A V++A + + E+ K++V + + + D
Sbjct: 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGT--AIAVQVD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ +S +A A+ I+ L+NNA + G ++L L+T+
Sbjct: 64 VSDPDSAKAMADATVSAFGGIDYLVNNAAIYG----------GMKL------DLLITVPW 107
Query: 262 --LDKLQA-NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
K + NL +C Y + I+N SS A ++ +
Sbjct: 108 DYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTA---------------AWLYS 152
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K+ T++LA+ L G I VNA+ PG ++T+ R
Sbjct: 153 NFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATR 194
|
Length = 250 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+V++TG +G+G A A LAK AK+ + + + E A+ ++ + + VL K D+
Sbjct: 4 KVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADV 63
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE----EKIELQLGVNHMGHFLLT 258
+ + + A+ + ++ +I+ NNAG+ G ++ LTE ++ + + +N G F
Sbjct: 64 SDEAQVEAYVDATVEQFGRIDGFFNNAGIEG-KQNLTEDFGADEFDKVVSINLRGVF--- 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
Y L ++ V +E I+N +SV RG N+
Sbjct: 120 -------------YGLEKVL--KVMREQGSGMIVNTASVGGIRGVGNQ------------ 152
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
Y +K V TR A GI +NA+ PG + T ++ S
Sbjct: 153 SGYAAAKHGVVGLTRNSAVEYGQYGIRINAIAPGAILTPMVEGS 196
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 47/292 (16%)
Query: 143 KIVIVTGANTGIGKAIAREL-----AKRKAKVIMACRDLDKCEKARKEVVLESKNK---- 193
K+V+VTGAN+G+G AI L + +I+ACR+L + E A + +L S
Sbjct: 2 KVVLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRA-LLASHPDARVV 60
Query: 194 --YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
YVL DL++ S+ A A+E+KK +++ L NAG+ + ++ N
Sbjct: 61 FDYVL---VDLSNMVSVFAAAKELKKRYPRLDYLYLNAGI-MPNPGIDWIGAIKEVLTNP 116
Query: 252 MG-----HFLLTM--LLLDKLQANLSRYSL---CNLIWYYVF---------QESAPSRII 292
+ + + LL +A N+ +Y + S+II
Sbjct: 117 LFAVTNPTYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGSQII 176
Query: 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
SS+ + ED+ Y+ SK L + L ++ G+ VHPG
Sbjct: 177 WTSSLNASPKYFSLEDIQHLKG---PAPYSSSKYLVDLLSLALNRKFNKLGVYSYVVHPG 233
Query: 353 IVNTDILRHSSYYDSWLSTVVLKPLVWL-FIKSPR------QGAQTIVYASL 397
I T++ + T+ L L + SP GA+ +V+ +L
Sbjct: 234 ICTTNLT--YGILPPFTWTLALPLFYLLRRLGSPWHTISPYNGAEALVWLAL 283
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-16
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 44/222 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++T A GIG+AIA A+ A VI D+++ K LE + + R D
Sbjct: 2 GKVALITAAAQGIGRAIALAFAREGANVIAT--DINE----EKLKELE-RGPGITTRVLD 54
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ +E + A A+E +I+VL N AG G ++ + + +N +L+
Sbjct: 55 VTDKEQVAALAKEE----GRIDVLFNCAGFVHHGSILDCEDDDWDFAMNLNVRSMYLMIK 110
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK-RGTINKEDLNSENSYDPT 318
+L K+ A ++ IIN+SSVA +G N+
Sbjct: 111 AVLPKMLA----------------RKDG--SIINMSSVASSIKGVPNR------------ 140
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A GI NA+ PG V+T L
Sbjct: 141 FVYSTTKAAVIGLTKSVAADFAQQGIRCNAICPGTVDTPSLE 182
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA GIG AIAR A+ A V +A D E+A + + VL
Sbjct: 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV 231
D+ S+ A ++ ++VL+NNAG+
Sbjct: 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96
|
Length = 260 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-16
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 39/219 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTG G+G A AR L AKV+++ ++ + A E L ++ D
Sbjct: 5 GKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAE--LGDAARFF---HLD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ--LGVNHMGHFLLTM 259
+ ++ A + ++ +++VL+NNAG+ + T E + L +N G FL T
Sbjct: 60 VTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDINLTGVFLGT- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+A + +E+ IIN+SS+ G
Sbjct: 119 ------RAVIPP-----------MKEAGGGSIINMSSIEGLVGDPA------------LA 149
Query: 320 AYNQSKLANVLFTRELAK--RLEGTGITVNAVHPGIVNT 356
AYN SK A T+ A +G GI VN+VHPG + T
Sbjct: 150 AYNASKGAVRGLTKSAALECATQGYGIRVNSVHPGYIYT 188
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-16
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRK 199
RG++ +VTGA+ GIG A+AR L + KV+ R +DK E E +S + +
Sbjct: 5 RGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAE--CQSAGYPTLFPYQ 62
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGV 231
CDL+++E I + ++ +++ ++V INNAG+
Sbjct: 63 CDLSNEEQILSMFSAIRTQHQGVDVCINNAGL 94
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 6e-16
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V++TGA++GIG+A+ARE AK V +A R D+ ++ + E L + N V D+
Sbjct: 1 VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAE--LLNPNPSVEVEILDVTD 58
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE--EKIELQLGVNHMGHFLLTMLLL 262
+E + E++ E ++++I NAGV + + + N +G + L
Sbjct: 59 EERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRETIDTNLLGAAAILEAAL 118
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ-AY 321
F+ ++ +SSVA RG P AY
Sbjct: 119 P------------------QFRAKGRGHLVLISSVAALRG-------------LPGAAAY 147
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
+ SK A L ++ GI V ++PG ++T + T + + +L
Sbjct: 148 SASKAALSSLAESLRYDVKKRGIRVTVINPGFIDTPL------------TANMFTMPFLM 195
Query: 382 IKSPRQGAQTIVYA 395
S Q A+ I A
Sbjct: 196 --SVEQAAKRIYKA 207
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 38/220 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ ++TG ++GIG+A+A AK A + + D + K+ V E + L
Sbjct: 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRV-EKEGVKCLLIPG 103
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAG----VSGCRKMLTEEKIELQLGVNHMGHFL 256
D++ + + EE +E ++++L+NNA +T E+++ N +F
Sbjct: 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLED-ITAEQLDKTFKTNIYSYFH 162
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T L L+ S IIN S+ G N+ ++
Sbjct: 163 MTKAALPHLKQG--------------------SAIINTGSITGYEG--NETLID------ 194
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y+ +K A FTR LA+ L GI VNAV PG + T
Sbjct: 195 ----YSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWT 230
|
Length = 290 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-16
Identities = 63/226 (27%), Positives = 90/226 (39%), Gaps = 49/226 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
K+ IVTGA+ GIG AIAR LA V + + A E+V +E+ + +
Sbjct: 5 NKVAIVTGASRGIGAAIARRLAADGFAVAV---NYAGSAAAADELVAEIEAAGGRAIAVQ 61
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHFLL 257
D+A ++ + + +I+VL+NNAGV + E + + N G F+
Sbjct: 62 ADVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFV- 120
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSE 312
V +E+A RIIN+S+
Sbjct: 121 ------------------------VLREAARHLGQGGRIINLSTSVIAL---------PL 147
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
Y P Y SK A LA L G GITVNAV PG V T++
Sbjct: 148 PGYGP---YAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATEL 190
|
Length = 245 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 1e-15
Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 43/226 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA+ GIG+AIA LA A V I R+ ++ +E+ ES +
Sbjct: 6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI--ESNGGKAFLIEA 63
Query: 201 DLASQESIRAFAEEVKKE------NKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHM 252
DL S + ++ E++K E +I++L+NNAG+ G + TEE + + VN
Sbjct: 64 DLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIK 123
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
F L L L+A R+IN+SS + G
Sbjct: 124 APFFLIQQTLPLLRAE--------------------GRVINISSAEVRLG---------- 153
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ + AY SK A T LAK L GITVN + PG TDI
Sbjct: 154 --FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDI 197
|
Length = 254 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-15
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 52/237 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA++GIG+A AR LA A V +A R +D+ E E LE++ L + D
Sbjct: 3 GKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADE--LEAEGGKALVLELD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV-----------SGCRKMLTEEKIELQLGVN 250
+ ++ + A E + ++++L+NNAG+ + +M+ LG+
Sbjct: 61 VTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTN----LLGLM 116
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
+ H L LL I+N+SSVA + N
Sbjct: 117 YTTHAALPHHLLRN-----------------------KGTIVNISSVAGRVAVRN----- 148
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
+ YN +K F+ L + + G+ V + PG V+T++ H ++ +
Sbjct: 149 -------SAVYNATKFGVNAFSEGLRQEVTERGVRVVVIEPGTVDTELRDHITHTIT 198
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-15
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 39/223 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE--SKNKYVLCRKC 200
K+ +VTG GIGK IA LAK V +A D E+ KE E + K
Sbjct: 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVA----DLNEETAKETAKEINQAGGKAVAYKL 56
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D++ ++ + + ++ ++ +V++NNAGV+ +L TEE+++ VN G
Sbjct: 57 DVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLF-- 114
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+QA ++ ++ +IIN +S+A G P
Sbjct: 115 -----GIQAAARQFK----------KQGHGGKIINAASIAGHEGN-------------PI 146
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY+ +K A T+ A+ L GITVNA PGIV T +
Sbjct: 147 LSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE 189
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 46/222 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +++TG +GIG A+A+ + VI+ R+ ++ +A+ E N + CD
Sbjct: 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE------NPEIHTEVCD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV------SGCRKMLTEEKIELQLGVNHMGHF 255
+A ++S R E +KKE +NVLINNAG+ +G +L + E ++ N +
Sbjct: 59 VADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLL--DDAEQEIATNLLAPI 116
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VAHKRGTINKEDLNSENS 314
LT LLL L E+ IINVSS +A +
Sbjct: 117 RLTALLLPHLLRQ---------------PEAT---IINVSSGLA-----------FVPMA 147
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P Y +K A +T L ++L+ T + V + P +V+T
Sbjct: 148 STPV--YCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDT 187
|
Length = 245 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 53/221 (23%), Positives = 81/221 (36%), Gaps = 43/221 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V VTGA GIG A+A + AKVI D+ +++ D
Sbjct: 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVI----GFDQAFLTQEDYPFA-------TFVLD 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTM 259
++ ++ + + E ++VL+N AG+ G L++E + VN G F L
Sbjct: 57 VSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNL-- 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+A + F+ I+ V S A I
Sbjct: 115 -----FRA-VMPQ----------FRRQRSGAIVTVGSNAAHVPRIG------------MA 146
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + + L G+ N V PG +TD+ R
Sbjct: 147 AYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQR 187
|
Length = 252 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 33/217 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA GIG AIA+ L + KV + + + + A ++ + + K D
Sbjct: 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAV--KAD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ ++ + A +V +NV++NNAGV+ + +TEE+ + +N G
Sbjct: 60 VSDRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIW--- 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+QA + + +IIN +S A G N E +
Sbjct: 117 ----GIQAAQEAFK----------KLGHGGKIINATSQAGVVG-------NPELA----- 150
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y+ +K A T+ A+ L GITVNA PGIV T
Sbjct: 151 VYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKT 187
|
Length = 256 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-15
Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 49/230 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTG++ GIGKAIA LA+ + R E+ +E +E+ + L K
Sbjct: 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEE--IEALGRKALAVKA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK--MLTEEKIELQLGVNHMGHFLLT 258
++ E I+ ++ +E +++V +NNA SG + M EE H+ T
Sbjct: 62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAA-SGVLRPAMELEES-----------HWDWT 109
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAP-------SRIINVSSVAHKRGTINKEDLNS 311
M N C QE+A +II++SS L S
Sbjct: 110 M------NINAKALLFCA-------QEAAKLMEKVGGGKIISLSS------------LGS 144
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+ SK A TR LA L GI VNAV G V+TD L+H
Sbjct: 145 IRYLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH 194
|
Length = 250 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-15
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 52/234 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRKC 200
K++I+TGA+ GIG A A A+R V C + + A + VV + + L
Sbjct: 3 KVMIITGASRGIGAATALLAAERGYAV---CLNYLRNRDAAEAVVQAIRRQGGEALAVAA 59
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
D+A + + E V +E +++ L+NNAG+ +E Q+ + M
Sbjct: 60 DVADEADVLRLFEAVDRELGRLDALVNNAGI-----------LEAQMRLEQMD------- 101
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSR-----------IINVSSVAHKRGTINKEDL 309
A L+R N++ ++ A R I+NVSS+A + G
Sbjct: 102 -----AARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLG------- 149
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
S Y Y SK A T LAK + GI VNAV PG++ T+I H+S
Sbjct: 150 -SPGEY---IDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEI--HAS 197
|
Length = 248 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 33/219 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI IVTGA++G G ELAK+ VI R+ +K E + + + + ++ D
Sbjct: 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ Q SI F +K+ +I++L+NNAG G + + E+ Q N G +T
Sbjct: 63 VTDQNSIHNFQLVLKEIG-RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQ 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+L Y Q+S +IIN+SS++ + G P
Sbjct: 122 AVLP----------------YMRKQKSG--KIINISSISGRVGF---------PGLSP-- 152
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
Y SK A F+ L L+ GI V + PG NT+I
Sbjct: 153 -YVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNI 190
|
Length = 280 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-15
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 35/220 (15%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S GK+ IVTG NTG+G+ A LAK A +I+ ++ R+ + E + + V
Sbjct: 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI--EKEGRKVTFV 68
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
+ DL ES +E +E KI++L+NNAG +L +E + +N +
Sbjct: 69 QVDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYH 128
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L+ + V + +IIN++S+ +G +
Sbjct: 129 LSQAVAK------------------VMAKQGSGKIINIASMLSFQGGK----------FV 160
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P AY SK T+ A L I VNA+ PG + T
Sbjct: 161 P--AYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKT 198
|
Length = 258 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-15
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 41/224 (18%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLC 197
S GK+ +VTGANTG+G+ IA LA+ A ++ A R + + +++V + L
Sbjct: 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPS---ETQQQVEALGRRFLSL- 57
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ----LGVNHMG 253
DL+ E+I+A + +E I++L+NNAG+ R+ EE E + VN
Sbjct: 58 -TADLSDIEAIKALVDSAVEEFGHIDILVNNAGI--IRRADAEEFSEKDWDDVMNVNLKS 114
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F LT +IIN++S+ +G I
Sbjct: 115 VFFLTQAAAKHFLKQGRG-----------------GKIINIASMLSFQGGIR-------- 149
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+Y SK A T+ LA GI VNA+ PG + T+
Sbjct: 150 ----VPSYTASKHAVAGLTKLLANEWAAKGINVNAIAPGYMATN 189
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-15
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 54/235 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TG +G A+AR LA+ AKV R+ +K +K KE + + + D
Sbjct: 5 NKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKE--ITALGGRAIALAAD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAG----------------VSGCRKMLTEEKIEL 245
+ + S+ EE+ + +++LIN AG L EE E
Sbjct: 63 VLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEF 122
Query: 246 QLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTIN 305
+N G FL + ++ E IIN+SS+
Sbjct: 123 VFDLNLNGSFLPSQ------------------VFGKDMLEQKGGSIINISSM-------- 156
Query: 306 KEDLNSENSYDP---TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
N++ P AY+ +K A FT+ LA TG+ VNA+ PG T
Sbjct: 157 -------NAFSPLTKVPAYSAAKAAVSNFTQWLAVEFATTGVRVNAIAPGFFVTP 204
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-15
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 34/212 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG +GIG AIA+ LA A V++A D + EK + + L +CD
Sbjct: 1 GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEAAQGGPR---ALGVQCD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ S+ +++ E+ E ++++++NAG++ + + E + +N GHFL
Sbjct: 58 VTSEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHFL--- 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+SR + + Q + + N S N+
Sbjct: 115 ---------VSREAFRIMK----SQGIGGNIVFNASK-------------NAVAPGPNAA 148
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHP 351
AY+ +K A R LA GI VN V+P
Sbjct: 149 AYSAAKAAEAHLARCLALEGGEDGIRVNTVNP 180
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 8e-15
Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K +VTGA+ GIG+A AR L +V + RD +AR + + VL D+
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICARD-----EARLAAAAAQELEGVLGLAGDV 55
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTML 260
+ +R + +++ ++ L+NNAGV + + LT E+ L L N G F
Sbjct: 56 RDEADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHK 115
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L I+NV S+A K N++ A
Sbjct: 116 AAPALLRRGGGT------------------IVNVGSLAGK------------NAFKGGAA 145
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
YN SK + + L I V V PG V+T
Sbjct: 146 YNASKFGLLGLSEAAMLDLREANIRVVNVMPGSVDTG 182
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 9e-15
Identities = 64/290 (22%), Positives = 113/290 (38%), Gaps = 37/290 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI +VTGA+ GIG+ IA +L + A V + R + E + K + R CD
Sbjct: 3 GKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGKCIPVR-CD 61
Query: 202 LASQESIRAFAEEVKKE-NKKINVLINNA--GVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
+ + + A E V +E ++++L+NNA V + + E +
Sbjct: 62 HSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTI--------- 112
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
D L + C++ + ++ I+ +SS N
Sbjct: 113 --WDDINNVGLRAHYACSVYAAPLMVKAGKGLIVIISSTGGLEYLFN------------- 157
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR--HSSYYDSWLSTVVLKP 376
AY K A ++A L+ G+ V ++ PG V T+++ SW + +
Sbjct: 158 VAYGVGKAAIDRMAADMAHELKPHGVAVVSLWPGFVRTELVLEMPEDDEGSWHAK---ER 214
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD---RYEAR-VDGR 422
+L ++ + +V + DP L +SG+ + Y VDGR
Sbjct: 215 DAFLNGETTEYSGRCVVALAADPDLMELSGRVLITGELAREYGFTDVDGR 264
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-14
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++V+VTGA+ G+G AIAR A+ A+V++ E V + + + D+
Sbjct: 1 QVVLVTGASRGLGAAIARSFAREGARVVVNYYR----STESAEAVAAEAGERAIAIQADV 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS---GCRKMLTEEKIELQLGVNHMGHFLLTM 259
++ ++A EE K ++ ++NNA + + T + I+ + + +
Sbjct: 57 RDRDQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRKTFDTIDWEDYQQQLEGAVKGA 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L L LQA L F+E R+IN+ + + + P
Sbjct: 117 LNL--LQAVLPD-----------FKERGSGRVINIGTNLFQNPVV------------PYH 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y +K A + FTR +AK L GITVN V G++
Sbjct: 152 DYTTAKAALLGFTRNMAKELGPYGITVNMVSGGLLKV 188
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 45/229 (19%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K++++TG G+G+A+A LA++ AK+ + + +K E+A E + V
Sbjct: 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAE--CGALGTEVRGYAA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
++ +E + A ++ ++ ++N LINNAG+ R L ++ + G + + +
Sbjct: 62 NVTDEEDVEATFAQIAEDFGQLNGLINNAGI--LRDGLL---VKAKDGK------VTSKM 110
Query: 261 LLDKLQA----NLSRYSLCNLIWYYVFQESAPSR--------IINVSSVAHKRGTINKED 308
L++ Q+ NL+ LC +E+A IIN+SS+A + G + + +
Sbjct: 111 SLEQFQSVIDVNLTGVFLCG-------REAAAKMIESGSKGVIINISSIA-RAGNMGQTN 162
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y+ SK T AK L GI V A+ PG++ T+
Sbjct: 163 ------------YSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETE 199
|
Length = 253 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-14
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK-VIMACRDL--DKCEKARKEVVLESKNKYVLCRK 199
V++TG G+G A+AR LA A+ +++ R + E LE+ V
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAE--LEALGAEVTVAA 58
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
CD+A ++++ A + ++ +++NAGV + LT E+ E L G + L
Sbjct: 59 CDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNL 118
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298
L D + SSVA
Sbjct: 119 HELTRDLDLG----------------------AFVLFSSVA 137
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 70/279 (25%), Positives = 111/279 (39%), Gaps = 49/279 (17%)
Query: 145 VIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+I+TGA+ GIG+A+A EL KR + V++ R E ++ V K DL
Sbjct: 2 IILTGASRGIGRALAEELLKRGSPSVVVLLARS---EEPLQELKEELRPGLRVTTVKADL 58
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSG-CRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ + E ++K + + ++LINNAG G K+ + ELQ + L + +
Sbjct: 59 SDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQ---KYFDLNLTSPVC 115
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L + + ++NVSS A + Y
Sbjct: 116 LTSTLLRAFK------------KRGLKKTVVNVSSGAAVNP------------FKGWGLY 151
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LRHSSYYDSWLSTVV-LK-- 375
SK A +F R LA E + V + PG+V+TD+ +R +S S LK
Sbjct: 152 CSSKAARDMFFRVLAA--EEPDVRVLSYAPGVVDTDMQREIRETSADPETRSRFRSLKEK 209
Query: 376 -PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413
L+ P Q A+ A+L + SG + YD
Sbjct: 210 GELL-----DPEQSAE--KLANLLEKDKFESGAHVDYYD 241
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 39/220 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TG +GIG AR+ A+V + RD E AR E L L + D
Sbjct: 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAE--LGES---ALVIRAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +A A+ + + +++ + NAGV+ + E + N G + L
Sbjct: 61 AGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFL-- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+QA L + A S ++N S AH + NS
Sbjct: 119 -----IQALLP-----------LLANPA-SIVLNGSINAH---------IGMPNS----S 148
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y SK A + + L+ L GI VNAV PG V T +
Sbjct: 149 VYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLY 188
|
Length = 249 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 1e-14
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 43/227 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRK 199
+GK+ +VTGA+ GIG+AIA+ LA A ++A ++ E+A + V ++S
Sbjct: 3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60
Query: 200 CDLASQESIRAFAEEVKKE------NKKINVLINNAGVS--GCRKMLTEEKIELQLGVNH 251
+L S + A + E + K ++LINNAG+ + TE+ + + VN
Sbjct: 61 ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 120
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F + L +L+ N SRIIN+SS A + I+ D
Sbjct: 121 KAPFFIIQQALSRLRDN--------------------SRIINISSAATR---ISLPDF-- 155
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
AY+ +K A T LAK+L GITVNA+ PG + TD+
Sbjct: 156 -------IAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDM 195
|
Length = 252 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-14
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
+ GK+V++TG +TG+G+A+A K KAKV++ R D ++ +E+ + +
Sbjct: 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI--KKAGGEAI 60
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-----LGVNH 251
K D+ + + + KE ++V+INNAG+ + + E + L+ + N
Sbjct: 61 AVKGDVTVESDVVNLIQTAVKEFGTLDVMINNAGIE--NAVPSHE-MSLEDWNKVINTNL 117
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G FL SR ++ Y + IIN+SSV H
Sbjct: 118 TGAFL------------GSREAI-----KYFVEHDIKGNIINMSSV-H------------ 147
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
E P Y SK L T LA GI VN + PG +NT I
Sbjct: 148 EQIPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPI 195
|
Length = 261 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++TGA +G G A AR A K+++A D ++A E L ++ VL + D
Sbjct: 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAE--LRAQGAEVLGVRTD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHF---- 255
++ + A A+ + +++L NNAGV + + E LGVN G
Sbjct: 64 VSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVR 123
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
T L+L + + + I+N +S+A G +
Sbjct: 124 AFTPLMLAAAEKD----------------PAYEGHIVNTASMA---GLLAP--------- 155
Query: 316 DPTQA-YNQSKLANVLFTRELAK--RLEGTGITVNAVHPGIVNTDI 358
P YN SK A V T L + L + + + P V T I
Sbjct: 156 -PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI 200
|
Length = 287 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-14
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 57/234 (24%)
Query: 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVL 196
E GK +VTGA GIG+A + LAK A+V+ +R + L+S L
Sbjct: 2 ELDFAGKRALVTGAGKGIGRATVKALAKAGARVVAV---------SRTQADLDS-----L 47
Query: 197 CRKC--------DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQ 246
R+C DL+ ++ V +++L+NNA V+ + L T+E +
Sbjct: 48 VRECPGIEPVCVDLSDWDATEEALGSV----GPVDLLVNNAAVAILQPFLEVTKEAFDRS 103
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
VN ++ ++ + A P I+NVSS A +R
Sbjct: 104 FDVNVRAVIHVSQIVARGMIA-----------------RGVPGSIVNVSSQASQR----- 141
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y +K A + T+ +A L I VN+V+P +V TD+ R
Sbjct: 142 -------ALTNHTVYCSTKAALDMLTKVMALELGPHKIRVNSVNPTVVMTDMGR 188
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 4e-14
Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLCRK 199
+I VTG GIG +I + L K KV+ C R+ LE + + +
Sbjct: 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP----NSPRRVKWLEDQKALGFDFIASE 59
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFL 256
++ +S +A ++VK E +I+VL+NNAG++ RKM T E + N F
Sbjct: 60 GNVGDWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKM-TREDWTAVIDTNLTSLFN 118
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T ++D + E RIIN+SSV ++G + +
Sbjct: 119 VTKQVIDGMV------------------ERGWGRIINISSVNGQKGQFGQTN-------- 152
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K FT LA+ + G+TVN V PG + TD+++
Sbjct: 153 ----YSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK 192
|
Length = 246 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-14
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 39/244 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-----LESKNKYVL 196
+ V++TG + G+G+AIA LA A VI+ + R E +E+ L
Sbjct: 6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDI---HPMRGRAEADAVAAGIEAAGGKAL 62
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGH 254
D+ + RA + +E ++++L+NNAG++ L+ E+ + + VN G
Sbjct: 63 GLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGF 122
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F +T L + RI+N++SVA RG N+ +N
Sbjct: 123 FNVTQAALPPMIRA-----------------RRGGRIVNIASVAGVRG--NRGQVN---- 159
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
Y SK + T+ LA L GITVNAV PG +NT + +++ + L+ V +
Sbjct: 160 ------YAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPTEHLLNPVPV 213
Query: 375 KPLV 378
+ L
Sbjct: 214 QRLG 217
|
Length = 249 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++TG +G A+A+ELA+ AKV + R+ +K E E +++ L K D
Sbjct: 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAE--IKAAGGEALAVKAD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ +ES+ +++ ++ ++LIN AG G T + +L F L
Sbjct: 68 VLDKESLEQARQQILEDFGPCDILINGAG--GNHPKATTDNEFHELIEPTKTFFDLDEEG 125
Query: 262 LDK-LQANLSRYSLCNLIWYYVFQESAPSR----IINVSSVAHKRGTINKEDLNSENSYD 316
+ NL L L+ VF + R IIN+S S N++
Sbjct: 126 FEFVFDLNL----LGTLLPTQVFAKDMVGRKGGNIINIS---------------SMNAFT 166
Query: 317 P-TQ--AYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
P T+ AY+ +K A FT+ LA GI VNA+ PG
Sbjct: 167 PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPG 205
|
Length = 278 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 35/233 (15%)
Query: 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVL 196
E + ++ VTG GIG+ AR LA A V++A +L+ E E+ + +
Sbjct: 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAV 468
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGH 254
K D+ +++++A +V +++++NNAG++ T ++ +L L + G+
Sbjct: 469 ALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGY 528
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
FL+ + + L I + I + ++V +
Sbjct: 529 FLVA----REAFRQMREQGLGGNIVF----------IASKNAVYAGKNAS---------- 564
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
AY+ +K A R LA GI VN V+P V L+ S +D
Sbjct: 565 -----AYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAV----LQGSGIWDG 608
|
Length = 676 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-14
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 38/221 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTGA +G G+ IAR A+ A+V++A D++ + A + + + + D
Sbjct: 5 GKVAIVTGAGSGFGEGIARRFAQEGARVVIA--DINA-DGAERVAADIGEAAIAI--QAD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ + + A E + ++++L+NNAG++ K + EE+ + VN +L
Sbjct: 60 VTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNVKSIYLSA 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ +E IIN++S A R + L
Sbjct: 120 QALVP------------------HMEEQGGGVIINIASTAGLR---PRPGLT-------- 150
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
YN SK V T+ +A L I VN + P T +L
Sbjct: 151 -WYNASKGWVVTATKAMAVELAPRNIRVNCLCPVAGETPLL 190
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 8e-14
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 40/221 (18%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ ++V +TG GIG+A+A A ++++ RD + +K + L ++ L
Sbjct: 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAE--ALGDEH---LSV 320
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHF 255
+ D+ + ++ + +++ +++VL+NNAG++ K E E VN G F
Sbjct: 321 QADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAF 380
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ A S I+N+ S+ S +
Sbjct: 381 ACA-----RAAAR---------------LMSQGGVIVNLGSI------------ASLLAL 408
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P AY SK A + +R LA GI VN V PG + T
Sbjct: 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIET 449
|
Length = 520 |
| >gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-13
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 39/218 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTGA+ GIG+ IAR L + A V + ++K E E+ + V +
Sbjct: 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPAN 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
L+ ++ ++A ++ + + + +++L+NNAG++ G +++E + L VN F LT
Sbjct: 61 LSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTR 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + RY RIIN++SV G +P Q
Sbjct: 121 ELTHPMMRR--RY----------------GRIINITSVVGVTG-------------NPGQ 149
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
A Y SK + F++ LA+ + +TVN V PG + +
Sbjct: 150 ANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIES 187
|
Length = 245 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K+VIVTG +GIG AI+ LA+ A ++ R E A + L + +
Sbjct: 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEE---LRALQPRAEFVQV 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
DL R E+ + +I+ L+NNAGV+ + + L+ G
Sbjct: 63 DLTDDAQCRDAVEQTVAKFGRIDGLVNNAGVN--------DGVGLEAGR----------- 103
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESA-----PSR--IINVSSVAHKRGTINKEDLNSEN 313
+ A+L R NLI YYV SR I+N+SS G
Sbjct: 104 --EAFVASLER----NLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGG-------- 149
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371
T Y +K A + TRE A L G+ VNAV P V T + Y++W++T
Sbjct: 150 ----TSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPL------YENWIAT 197
|
Length = 258 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 41/217 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K V++TG ++GIG A EL +R +V+ ACR D + + +L DL
Sbjct: 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN-SLGFTG----IL---LDL 54
Query: 203 ASQESI-RAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
ES+ RA E + + ++ L NNAG V G ++ +++E Q N G LTM
Sbjct: 55 DDPESVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTM 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LLL + RI+ SSV G I S
Sbjct: 115 LLLPAMLP------------------HGEGRIVMTSSVM---GLI---------STPGRG 144
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A ++ L L +GI V+ + PG + T
Sbjct: 145 AYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRT 181
|
Length = 256 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 48/227 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRKC 200
G +VTGA GIGKA A ELAKR VI+ R +K + KE +E K
Sbjct: 1 GTWAVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKE--IEEKYGVETKTIAA 58
Query: 201 DLASQESIRAFAEEVKK--ENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGH 254
D ++ + I E ++K E I +L+NN G+S E++++ + VN M
Sbjct: 59 DFSAGDDI---YERIEKELEGLDIGILVNNVGISHSIPEYFLETPEDELQDIINVNVMAT 115
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+T L+L + I+N+SS A G I
Sbjct: 116 LKMTRLILPGMVKRKK------------------GAIVNISSFA---GLI---------- 144
Query: 315 YDPT---QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
PT Y+ SK F+R L + + GI V ++ P +V T +
Sbjct: 145 --PTPLLATYSASKAFLDFFSRALYEEYKSQGIDVQSLLPYLVATKM 189
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 33/219 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK I+TGA GIGK IA A A V+++ + D + + + + CR CD
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV-VDEIQQLGGQAFACR-CD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTML 260
+ S++ + A A+ + K+++L+NNAG G + + +N F L+ L
Sbjct: 69 ITSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQL 128
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+ +++ N I+ ++S+A +EN +
Sbjct: 129 VAPEMEKN------------------GGGVILTITSMA------------AENKNINMTS 158
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y SK A R +A L I VN + PG + TD L
Sbjct: 159 YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDAL 197
|
Length = 255 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 69/218 (31%), Positives = 100/218 (45%), Gaps = 42/218 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA++GIGKA AR LA + V A R +DK E L S + L D+
Sbjct: 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED------LASLGVHPL--SLDV 55
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTML 260
+ SI+A + + E +I+VL+NNAG G + + ++ Q VN G LT L
Sbjct: 56 TDEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQL 115
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+L ++A Q S RIIN+SS+ G I Y P A
Sbjct: 116 VLPHMRA----------------QRSG--RIINISSMG---GKI----------YTPLGA 144
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y+ +K A F+ L + GI V + PG + T+
Sbjct: 145 WYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTE 182
|
Length = 273 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 62/231 (26%), Positives = 91/231 (39%), Gaps = 63/231 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-----ACRDLDKCEKARKEVVLESKNKYVL 196
GK+ +VTGA GIG AIA LA+ A V+ A L L
Sbjct: 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALA------- 262
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KML---TEEKIELQLGVNHM 252
D+ + ++ AE + + + ++++++NAG++ R K L E + + L VN +
Sbjct: 263 ---LDITAPDAPARIAEHLAERHGGLDIVVHNAGIT--RDKTLANMDEARWDSVLAVNLL 317
Query: 253 GHFLLTMLLLDK--LQANLSRYSLCNLIWYYVFQESAPSRIINVSS---VAHKRGTINKE 307
+T LL L RI+ VSS +A RG N
Sbjct: 318 APLRITEALLAAGALGDG--------------------GRIVGVSSISGIAGNRGQTN-- 355
Query: 308 DLNSENSYDPTQAYNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Y SK A V+ + LA L GIT+NAV PG + T
Sbjct: 356 -------------YAASK-AGVIGLVQALAPLLAERGITINAVAPGFIETQ 392
|
Length = 450 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 51/223 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR--- 198
++ +V G +G + LA+ +V +A D++ EKA V E +Y
Sbjct: 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVA--DINS-EKAAN-VAQEINAEYGEGMAYG 57
Query: 199 -KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGH 254
D S++S+ A + V + ++++L+ NAG++ +T+ + L VN +G+
Sbjct: 58 FGADATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAF-ITDFQLGDFDRSLQVNLVGY 116
Query: 255 FLLT-----MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
FL +++ D +Q RII ++S + K G+
Sbjct: 117 FLCAREFSRLMIRDGIQG----------------------RIIQINSKSGKVGS------ 148
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
NS Y+ +K V T+ LA L GITV+++ G
Sbjct: 149 -KHNS-----GYSAAKFGGVGLTQSLALDLAEYGITVHSLMLG 185
|
Length = 259 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
TS GK+V+VTGA GIG +AR L R AK+ + + + E+ + + V+
Sbjct: 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVA 64
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ--LGVNHMGHF 255
DLA +++A AEE + I+V++ NAG++ + + + + VN +G
Sbjct: 65 DVTDLA---AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLG-- 119
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWY--YVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
+ R +L LI YV Q VSS+A
Sbjct: 120 ----------VFHTVRATLPALIERRGYVLQ---------VSSLA--------------- 145
Query: 314 SYDPT---QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
++ AY SK F L + G+TV + + ++TD++R +
Sbjct: 146 AFAAAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDA 197
|
Length = 296 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 37/232 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK +++TGA++GIG+A A + A+R A V+ R D + + + C
Sbjct: 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMA--VPC 96
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE-----EKIELQLGVNHMGHF 255
DL+ +++ A +V+K +++LINNAG S R+ L E +E + +N+
Sbjct: 97 DLSDLDAVDALVADVEKRIGGVDILINNAGRS-IRRPLAESLDRWHDVERTMVLNYYAPL 155
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
L L + E IINV++
Sbjct: 156 RLIRGLAPGM------------------LERGDGHIINVATWGVLSEASPL--------- 188
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
YN SK A +R + G+ ++ +V T ++ + YD
Sbjct: 189 --FSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKAYDG 238
|
Length = 293 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-13
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 38/220 (17%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRKCDL 202
V+VTGA GIG A+AR LA+ A+V +D+ + E+V L K D+
Sbjct: 1 VLVTGAAQGIGYAVARALAEAGARVAA----VDRNFEQLLELVADLRRYGYPFATYKLDV 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTML 260
A ++ + +++E I+VL+N AG+ G L++E + VN G F
Sbjct: 57 ADSAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVF----- 111
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
N+S+ ++ + I+ V S A + A
Sbjct: 112 -------NVSQ-AVSP-----RMKRRRSGAIVTVGSNAANVPRMG------------MAA 146
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A + T+ L L GI N V PG +T++ R
Sbjct: 147 YAASKAALTMLTKCLGLELAPYGIRCNVVSPGSTDTEMQR 186
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 4e-13
Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 41/218 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTG GIGK I + + KV+ A D+D+ A +V D
Sbjct: 1 GKVAIVTGGGHGIGKQICLDFLEAGDKVVFA--DIDEERGADFAEAEGPNLFFV---HGD 55
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+A + ++ + ++ +I+VL+NNA + L E+ + L VN G + L+
Sbjct: 56 VADETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELSR 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV-AHKRGTINKEDLNSENSYDPT 318
D+L N RIIN++S A + S +
Sbjct: 116 YCRDELIKN-------------------KGRIINIASTRAFQ-------------SEPDS 143
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
+AY SK V T LA L G I VN + PG +NT
Sbjct: 144 EAYAASKGGLVALTHALAMSL-GPDIRVNCISPGWINT 180
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-13
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K+ IVTG + GIGKA+ L + + VI + D E + + Y K
Sbjct: 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVI----NFDIKEPS------YNDVDYF---KV 51
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
D++++E + + V + +I++L+NNAG+ + +E + + VN G FL
Sbjct: 52 DVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRI-INVNVNGIFL- 109
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+S+Y++ Y+ ++ IIN++SV T N
Sbjct: 110 -----------MSKYTI-----PYMLKQDKGV-IINIASVQSFAVTRN------------ 140
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + TR +A T I AV PG + T +L
Sbjct: 141 AAAYVTSKHAVLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLE 182
|
Length = 258 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-13
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K IVTG GIG A R A+ AKV + + + EK ++ +K C
Sbjct: 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI--RAKGGNAQAFAC 59
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEK------IELQL-GVNHMG 253
D+ ++S+ ++ ++VL+NNAG E I + L G HM
Sbjct: 60 DITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMH 119
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
H +L ++ E RI+N++S A + G+ +
Sbjct: 120 HAVLPGMV-----------------------ERGAGRIVNIASDAARVGSSGE------- 149
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y K V F++ +A+ GITVN V PG +T +L
Sbjct: 150 -----AVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALL 190
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 42/237 (17%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+ +TG++ G+G A AR L + +V++ R + A+ VL DL+S
Sbjct: 10 IFITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAKAAC---PGAAGVLI--GDLSS 64
Query: 205 QESIRAFAEEVKKENKKINVLINNAGV-SGCRKMLTEEKIELQLGVNHMGHFLLTMLLLD 263
R A++V + + +I+NAG+ SG + + I + VN + ++LT L+
Sbjct: 65 LAETRKLADQVNAIG-RFDAVIHNAGILSGPNRKTPDTGIPAMVAVNVLAPYVLTALI-- 121
Query: 264 KLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN-SYDPTQAYN 322
P R+I +SS H+ G + +D++ N + + AY+
Sbjct: 122 ----------------------RRPKRLIYLSSGMHRGGNASLDDIDWFNRGENDSPAYS 159
Query: 323 QSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT--------DILRHSSYYDSWLST 371
SKL + +A+R + + NAVHPG V T D L WL+
Sbjct: 160 DSKLHVLTLAAAVARRWKDV--SSNAVHPGWVPTKMGGAGAPDDLEQGHLTQVWLAE 214
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 50/233 (21%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V++TGA+ GIG+A A A R V I RD E+ V + D
Sbjct: 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAV--RAAGGRACVVAGD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+A++ + A + V+ +++ L+NNAG+ +M L
Sbjct: 61 VANEADVIAMFDAVQSAFGRLDALVNNAGIVA-----------------------PSMPL 97
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSR-----------IINVSSVAHKRGTINKEDLN 310
D A L R N++ Y+ A R I+NVSS+A + L
Sbjct: 98 ADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASR--------LG 149
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
S N Y Y SK A T LAK L G+ VNAV PG++ T+I H+S
Sbjct: 150 SPNEY---VDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEI--HAS 197
|
Length = 248 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 9e-13
Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 41/224 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +++TGA IG A+ + + + VI A D + + + + E K+K + + D
Sbjct: 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNA---GVSGCRKM--LTEEKIELQLGVNHMGHFL 256
+ QES+ F + ++ KI+ +N A +K ++ + L H+G
Sbjct: 64 ITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLS-LHLGSSF 122
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV--------AHKRGTINKED 308
L Y+ Q + ++N+SS+ GT
Sbjct: 123 LFS---------------QQFAKYFKKQG-GGN-LVNISSIYGVVAPKFEIYEGT----- 160
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
+ P + Y K + T+ LAK + + I VN V PG
Sbjct: 161 ----SMTSPVE-YAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPG 199
|
Length = 256 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 54/255 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ ++TG +GIG A AR LA A V++ D+D +A K E +V D
Sbjct: 7 GRVAVITGGGSGIGLATARRLAAEGATVVVG--DID--PEAGKAAADEVGGLFV---PTD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ ++++ A + + +++ NNAG+S E+ L G++
Sbjct: 60 VTDEDAVNALFDTAAETYGSVDIAFNNAGISP-----PEDDSILNTGLDAW--------- 105
Query: 262 LDKLQ-ANL-SRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++Q NL S Y C ++ ++ S IIN +S G+ +
Sbjct: 106 -QRVQDVNLTSVYLCCKAALPHMVRQGKGS-IINTASFVAVMGSATSQ-----------I 152
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
+Y SK + +REL + GI VNA+ PG VNT +L+
Sbjct: 153 SYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQE------------------ 194
Query: 380 LFIKSPRQGAQTIVY 394
LF K P + A+ +V+
Sbjct: 195 LFAKDPERAARRLVH 209
|
Length = 255 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 45/223 (20%)
Query: 147 VTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ 205
+TGA G+G+AIAR +A++ AKV + D + E+ D+ +
Sbjct: 4 ITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDE 63
Query: 206 ESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-----LGVNHMGHFLLTML 260
+A + ++VL+NNAGV E+IEL + +N FL
Sbjct: 64 AQWQALLAQAADAMGGLSVLVNNAGVGS---FGAIEQIELDEWRRVMAINVESIFLGC-- 118
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+++L L + S P+ I+N+SSVA + D A
Sbjct: 119 ----------KHALPYL------RASQPASIVNISSVA---AFKAEPDY---------TA 150
Query: 321 YNQSKLANVLFTR----ELAKRLEGTGITVNAVHPGIVNTDIL 359
YN SK A T+ + A+R G + N++HP + T I+
Sbjct: 151 YNASKAAVASLTKSIALDCARR--GLDVRCNSIHPTFIRTGIV 191
|
Length = 251 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-12
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 63/278 (22%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLC 197
S + K+V+VTG+ GIG+AIA LAK + V++ A + ++ + K V +
Sbjct: 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGV- 61
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLL 257
D++++E A+ ++L+NNAG+ G F
Sbjct: 62 -LADVSTREGCETLAKATIDRYGVADILVNNAGL---------------------GLFSP 99
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSE 312
+ + DKL ++I Y QE A I+N++SVA R
Sbjct: 100 FLNVDDKLIDKHISTDFKSVI--YCSQELAKEMREGGAIVNIASVAGIRPAYG------- 150
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW---- 368
Y K A + T+ LA L I VNA+ PG V T + S +
Sbjct: 151 -----LSIYGAMKAAVINLTKYLALEL-APKIRVNAIAPGFVKTKL--GESLFKVLGMSE 202
Query: 369 --------LSTVVLKP-----LVWLFIKSPRQGAQTIV 393
L +L P V +K Q V
Sbjct: 203 KEFAEKFTLMGKILDPEEVAEFVAAILKIESITGQVFV 240
|
Length = 252 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 41/225 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK---ARKEVVLESKNKYVLCR 198
GK+ +VTG GIG+A A A+ AKV++A RD E+ +E E+ L
Sbjct: 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEA-----LFV 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
CD+ ++A E+ +++ NNAG+ + L +E + + +GVN G +
Sbjct: 62 ACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVW 121
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
L + + A I+N +SVA
Sbjct: 122 LCMKYQIPLMLAQGG------------------GAIVNTASVAGLGAAPK---------- 153
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A + T+ A GI VNAV P +++TD+ R
Sbjct: 154 --MSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFR 196
|
Length = 253 |
| >gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-------DKCEKARKEVVLESKNKY 194
G++V+VTGA G+G+A A A+R AKV++ DL K A +VV E K
Sbjct: 5 GRVVLVTGAGGGLGRAYALAFAERGAKVVV--NDLGGDRKGSGKSSSAADKVVDEIKAAG 62
Query: 195 VLCRKCDLASQESIRAFAEEVK---KENKKINVLINNAGVSGCRKML--TEEKIELQLGV 249
+A+ +S+ + VK ++++L+NNAG+ R +EE +L + V
Sbjct: 63 GKA----VANYDSVEDGEKIVKTAIDAFGRVDILVNNAGILRDRSFAKMSEEDWDLVMRV 118
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
+ G F +T W Y ++ RIIN SS A G
Sbjct: 119 HLKGSFKVTRAA-----------------WPY-MRKQKFGRIINTSSAAGLYGNFG---- 156
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
QA Y+ +KL + + LA IT N + P
Sbjct: 157 ---------QANYSAAKLGLLGLSNTLAIEGAKYNITCNTIAPA 191
|
Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250 |
| >gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 3e-12
Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TG NTG+G+ +A LAK A I+ + E + L K ++ D
Sbjct: 8 GKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAEAPETQAQVEALGRKFHFIT---AD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L Q+ I + + + I++LINNAG+ + +L + + + +N F L+
Sbjct: 64 LIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQ 123
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + +IIN++S+ +G I
Sbjct: 124 AVAKQFVK-----------------QGNGGKIINIASMLSFQGGIR------------VP 154
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+Y SK A + TR LA L I VNA+ PG + TD
Sbjct: 155 SYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATD 192
|
Length = 251 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 6e-12
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 44/227 (19%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
+ GK +VTG GIG A L + A+V+ R + +
Sbjct: 2 SFFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTAR-----------SRPDDLPEG 50
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVS----GCRKMLTEEKIELQLGVN 250
V DL + E A A V + +++L++ G S G LT+E+ + +L +N
Sbjct: 51 VEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLN 110
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
+ L LL + A S II+V+S+ +
Sbjct: 111 LLAAVRLDRALLPGMIARGS------------------GVIIHVTSIQRRLPL------- 145
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ T AY +K A +++ L+K + G+ VN V PG + T+
Sbjct: 146 ----PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETE 188
|
Length = 260 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 6e-12
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK ++TGA+TGIGK +A + A+V +A R LD EK E + + V+ C
Sbjct: 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE--IGTSGGKVVPVCC 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ--LGVNHMGHFLLT 258
D++ + + + ++V E I++ + NAG+ ML E Q N G FL
Sbjct: 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTA 125
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV-SSVAHKRGTINKEDLNSENSYDP 317
QA + S IINV V+H
Sbjct: 126 -------QAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSH------------------ 160
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSW 368
Y SK A + T+ +A L I VN+V PG + T+++ + Y W
Sbjct: 161 ---YCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEYQPLW 209
|
Length = 253 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-12
Identities = 58/218 (26%), Positives = 80/218 (36%), Gaps = 41/218 (18%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
VIVTGA GIG+A+AR L + A VI DL L D+A
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAGATVIAL--DLPFVLLLEYGDPLRLT-------PLDVAD 51
Query: 205 QESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
++R + E+ I+ L+N AGV G L+ E E VN G F
Sbjct: 52 AAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVF------- 104
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
NL + ++ I+ V+S A I+ AY
Sbjct: 105 -----NLLQA------VAPHMKDRRTGAIVTVASNAAHVPRIS------------MAAYG 141
Query: 323 QSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
SK A ++ L L G+ N V PG +T + R
Sbjct: 142 ASKAALASLSKCLGLELAPYGVRCNVVSPGSTDTAMQR 179
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA++GIG+A A +LA+ +V R+ + +LE D+
Sbjct: 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLE----------LDV 54
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS 232
S++A +EV +I+VL+NNAGV
Sbjct: 55 TDDASVQAAVDEVIARAGRIDVLVNNAGVG 84
|
Length = 270 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 68/269 (25%), Positives = 101/269 (37%), Gaps = 57/269 (21%)
Query: 141 RGKIVIVTGAN--TGIGKAIARELAKRKAKVIM---------ACRDLDKCEKARKEVVLE 189
KI +VTGA+ GIG A+ R LA + + + E + +E
Sbjct: 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE 63
Query: 190 SKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQL 247
S + DL+ + V + ++LINNA S ++ LT E+++
Sbjct: 64 SYGVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHY 123
Query: 248 GVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKE 307
VN LL+ A +Y A RIIN++S G + E
Sbjct: 124 AVNVRATMLLS-------SAFAKQYDG-----------KAGGRIINLTSGQS-LGPMPDE 164
Query: 308 DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
AY +K A FT+ LA L GITVNAV+PG +T
Sbjct: 165 -----------LAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDT----------G 203
Query: 368 WLSTVVLKPLVWLF----IKSPRQGAQTI 392
W++ + LV F + P A+ I
Sbjct: 204 WITEELKHHLVPKFPQGRVGEPVDAARLI 232
|
Length = 256 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTG G+G AIAR A+R A ++ C R+ +K E E LE+ + +
Sbjct: 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAE--LEALGAKAVFVQA 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL+ E R + +++ L+N AG++ +L + E + VN F L
Sbjct: 64 DLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLM 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ ++ A I+N+ S++ G +
Sbjct: 124 QEAIKLMRR-----------------RKAEGTIVNIGSMSAHGG----------QPF--L 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
AY SK A TR A L I VN ++ G + T+
Sbjct: 155 AAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATE 193
|
Length = 260 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 46/219 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+V+G G+G+ +A A+ A V++A R ++ ++ E+ + + L D
Sbjct: 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI--DDLGRRALAVPTD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
+ ++ + +++ L+NNA K L + + +N +G LT
Sbjct: 63 ITDEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSR--IINVSS--VAHKRGTINKEDLNSENS 314
L A S I+ ++S + H +
Sbjct: 123 QAFTPAL---------------------AESGGSIVMINSMVLRHSQ------------- 148
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
P AY +K A + ++ LA L GI VN+V PG
Sbjct: 149 --PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPG 185
|
Length = 258 |
| >gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-11
Identities = 61/223 (27%), Positives = 92/223 (41%), Gaps = 45/223 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
G+ ++TGA++GIG+A A A+ A + A L + E+ EVV ++++ + +
Sbjct: 55 GRKALITGADSGIGRATAIAFAREGADI--ALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQLGVNHMGHFL 256
DL + R E KE +++L+N AG K +T E+ + N F
Sbjct: 113 GDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFW 172
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L + L S IIN S+ SY
Sbjct: 173 LCKAAIPHLPPGAS--------------------IINTGSI---------------QSYQ 197
Query: 317 PTQA---YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P+ Y +K A V FT+ LAK++ GI VNAV PG V T
Sbjct: 198 PSPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWT 240
|
Length = 300 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 34/96 (35%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD---LDKCEKARKEVVLESKNKYV 195
S +GKI ++TGA+ GIG AIA+ AK A ++ + +DK A +E+ +E+ YV
Sbjct: 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHG-YV 65
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGV 231
CD+ ++ ++A +++KE I++L+NNAG+
Sbjct: 66 ----CDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI 97
|
Length = 265 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-11
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 36/218 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TG+ GIG+A A+ + A+V +A D+ E AR + D
Sbjct: 3 GKTALITGSARGIGRAFAQAYVREGARVAIA--DI-NLEAARATAAEIGPAACAI--SLD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ Q SI + I++L+NNA + ++ T E + +N G +
Sbjct: 58 VTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLFM-- 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+QA + + +IIN++S A +RG E L
Sbjct: 116 -----MQAVARA----------MIAQGRGGKIINMASQAGRRG----EALVG-------- 148
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K A + T+ L GI VNA+ PG+V+ +
Sbjct: 149 VYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGE 186
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+VI+TG ++G+GKA+A+ A+ A V++ R +K E+A+ E +E VL + D
Sbjct: 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLE--IEQFPGQVLTVQMD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNA 229
+ + E ++ E++ ++ +I+ LINNA
Sbjct: 59 VRNPEDVQKMVEQIDEKFGRIDALINNA 86
|
Length = 252 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 60/234 (25%), Positives = 88/234 (37%), Gaps = 62/234 (26%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVI-MACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+++TGA +GIG A A L VI + R+ D DL
Sbjct: 1 TIVITGAASGIGAATAELLEDAGHTVIGIDLREADV--------------------IADL 40
Query: 203 ASQESIRAFAEEV-KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ E A +V + + ++ L+N AGV G L L VN+ G L
Sbjct: 41 STPEGRAAAIADVLARCSGVLDGLVNCAGVGG------TTVAGLVLKVNYFG----LRAL 90
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN----------- 310
++ L L + + VSS+A +K +L
Sbjct: 91 MEALLPRLRK--------------GHGPAAVVVSSIAGAGWAQDKLELAKALAAGTEARA 136
Query: 311 ---SENSYDPTQ-AYNQSKLANVLFTRELAKR-LEGTGITVNAVHPGIVNTDIL 359
+E++ P AY SK A ++TR A L G G+ VN V PG V T IL
Sbjct: 137 VALAEHAGQPGYLAYAGSKEALTVWTRRRAATWLYGAGVRVNTVAPGPVETPIL 190
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 37/221 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCR 198
G++ VTGA +GIG+ IA LA+ A V A DL + + E +E+ + +
Sbjct: 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADV--ALFDL-RTDDGLAETAEHIEAAGRRAIQI 63
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFL 256
D+ S+ +RA + E + + +N AG++ + + EE+ + + +N G FL
Sbjct: 64 AADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFL 123
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ +A E+ I+N++S++ G I L
Sbjct: 124 SC-----QAEARAML-------------ENGGGSIVNIASMS---GIIVNRGLL------ 156
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
QA YN SK + ++ LA G GI VN++ PG T
Sbjct: 157 --QAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTAT 195
|
Length = 254 |
| >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-11
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 57/277 (20%)
Query: 141 RGKIVIVTGAN--TGIGKAIARELAKRKAKVIMA---------CRDLDKCEKARKEVVLE 189
+ K+ +VTG + GIG AI +ELA+ A + +D+ E+ + + L
Sbjct: 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELL 64
Query: 190 SKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNA--GVSGCRKMLTEEKIELQL 247
V + DL ++ + +V ++ ++L+NNA + LT E+++
Sbjct: 65 KNGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHY 124
Query: 248 GVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKE 307
VN LL+ + +R F + + RIIN++S +G + E
Sbjct: 125 MVNVRATTLLS--------SQFAR----------GFDKKSGGRIINMTS-GQFQGPMVGE 165
Query: 308 DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
AY +K A T LA + GITVNA++PG +T
Sbjct: 166 -----------LAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDT----------G 204
Query: 368 WLSTVVLKPLVWLF----IKSPRQGAQTIVYASLDPS 400
W++ + + L+ +F I P+ A+ I + + + +
Sbjct: 205 WMTEEIKQGLLPMFPFGRIGEPKDAARLIKFLASEEA 241
|
Length = 256 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTG ++GIG A L + A V + RD ++ A + + +L +CD
Sbjct: 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAG 230
+ + + AFA V+ +++L+NNAG
Sbjct: 68 VLDEADVAAFAAAVEARFGGVDMLVNNAG 96
|
Length = 265 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-11
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 33/218 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK +VTGA +GIGK IA ELA+ A V +A + D E+ +
Sbjct: 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI--NKAGGKAIGVAM 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+ +++++ A ++V + +++L++NAG+ + + + ++ G FL T
Sbjct: 64 DVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L +++++ +I + SV + K
Sbjct: 124 KAALK-----------------HMYKDDRGGVVIYMGSVHSHEASPLK------------ 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY +K + R LAK + + V PG V T
Sbjct: 155 SAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRT 192
|
Length = 262 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 44/222 (19%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-----LESKNKYVLCRK 199
V++TGA +G+G+AIA A+ ++ +A D E+ +E + Y +
Sbjct: 3 VMITGAASGLGRAIALRWAREGWRLALA----DVNEEGGEETLKLLREAGGDGFYQ---R 55
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLL 257
CD+ + A A+ +++ I+V++NNAGV+ G + L+ E + Q+ +N MG
Sbjct: 56 CDVRDYSQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMG---- 111
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
++ +A L +F+ RI+N++S+A G + ++S
Sbjct: 112 ---VVKGCKAFLP-----------LFKRQKSGRIVNIASMA---GLMQGPAMSS------ 148
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
YN +K V + L L I V+ V P T++L
Sbjct: 149 ---YNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLL 187
|
Length = 270 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 6e-11
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 39/220 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN--KYVLCRK 199
K+VIVTG + GIG+ I R + AKV+ R + E+ K+V
Sbjct: 9 DKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKFVP--- 65
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFL 256
CD+ +E I+ + +I+ L+NNAG + E ++ L +N + +FL
Sbjct: 66 CDVTKEEDIKTLISVTVERFGRIDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFL 125
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L L R S N IIN+SS+ G+I ++
Sbjct: 126 ASKYALPHL-----RKSQGN--------------IINLSSLV---GSIGQKQ-------- 155
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y +K A T+ LA G+ VN + PG + T
Sbjct: 156 -AAPYVATKGAITAMTKALAVDESRYGVRVNCISPGNIWT 194
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 6e-11
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 41/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VT + GIG AIAR LA+ A V+++ R ++A L+ + V C
Sbjct: 10 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVA--TLQGEGLSVTGTVCH 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS---GCRKMLTEEKIELQLGVNHMGHFLLT 258
+ E + +++L++NA V+ G TEE + L VN L+T
Sbjct: 68 VGKAEDRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTEEVWDKILDVNVKATALMT 127
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ ++ ++ ++ VSSVA ++ P
Sbjct: 128 KAVVPEM------------------EKRGGGSVVIVSSVA---------------AFHPF 154
Query: 319 QA---YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
YN SK A + T+ LA L I VN + PG++ T
Sbjct: 155 PGLGPYNVSKTALLGLTKNLAPELAPRNIRVNCLAPGLIKT 195
|
This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 44/242 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM--ACRDLDK----CEKARKEV-----VLES 190
GK+ +TGA G G+A A LA A +I C L R+++ ++E+
Sbjct: 3 GKVAFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVEA 62
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLG 248
+ VL RK D+ +RA E+ ++ +++V++ NAGV + L+EE+ + L
Sbjct: 63 LGRKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDTVLD 122
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
+N G + C + ++ + II SSVA +
Sbjct: 123 INLTGVWR-----------------TCKAVVPHMIERGNGGSIIITSSVAGLKAL----- 160
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
P A Y +K V T+ LA L GI VN++HP V+T ++ + ++
Sbjct: 161 --------PGLAHYAAAKHGLVGLTKTLANELAEYGIRVNSIHPYSVDTPMIAPEAMREA 212
Query: 368 WL 369
+L
Sbjct: 213 FL 214
|
Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 38/237 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRKC 200
+ +VTGA IG+AIA LA +V++ + E + + L + + +
Sbjct: 1 AVALVTGAAKRIGRAIAEALAAEGYRVVVHYN---RSEAEAQRLKDELNALRNSAVLVQA 57
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK--MLTEEKIELQLGVNHMGHFLLT 258
DL+ + + + +VL+NNA +E+ G+N +LL
Sbjct: 58 DLSDFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLKAPYLLI 117
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+R S IIN+ D ++
Sbjct: 118 Q--------AFARRLA----------GSRNGSIINII------------DAMTDRPLTGY 147
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
AY SK A TR A L I VN + PG++ + Y ++ L V LK
Sbjct: 148 FAYCMSKAALEGLTRSAALEL-APNIRVNGIAPGLILLPEDMDAEYRENALRKVPLK 203
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVT +++GIGKA A LA++ + I D + ++ +EV S R+ D
Sbjct: 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEV--RSHGVRAEIRQLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L+ +++ + +I+VL+NNAG L ++ V+ G FL
Sbjct: 61 LSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLC-- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP-T 318
Q + ++ RIIN++SV H E++ P
Sbjct: 119 -----SQIAARH----------MVKQGQGGRIINITSV-H------------EHTPLPGA 150
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY +K A T+ +A L GI VNAV PG + T
Sbjct: 151 SAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIAT 188
|
Length = 256 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRKC 200
I +VTG + GIG+A A LA+ V + + + A +EVV + +
Sbjct: 2 AIALVTGGSRGIGRATALLLAQEGYTVAV---NYQQNLHAAQEVVNLITQAGGKAFVLQA 58
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
D++ + + A + + ++ + L+NNAG+ + LT E+I L N G+FL
Sbjct: 59 DISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLC 118
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
R ++ + + A I+NVSS A + L + Y
Sbjct: 119 C------------REAVKRMALKHGGSGGA---IVNVSSAASR--------LGAPGEY-- 153
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y SK A T L+ + GI VN V PG + T++ H+S
Sbjct: 154 -VDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEM--HAS 196
|
Length = 247 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 37/219 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG TGIG++I R K AKV + D + + E + CD
Sbjct: 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFF---HCD 74
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG--CRKMLTEEKIELQ--LGVNHMGHFLL 257
+ ++ + + + +++++NNAG++G C + E E + VN G F L
Sbjct: 75 VTVEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVF-L 133
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
M ++ L + S I+++ SVA G +
Sbjct: 134 GMKHAARIMIPLKKGS-----------------IVSLCSVASAIGGLGP----------- 165
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A + TR +A L GI VN V P V T
Sbjct: 166 -HAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPT 203
|
Length = 280 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 50/218 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K V++TGA +GIG A AR + A+V +DK +K L ++ + D
Sbjct: 5 TKTVLITGAASGIGLAQARAFLAQGAQVY----GVDKQDKP----DLSGNFHFL---QLD 53
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV-SGCRKML--TEEKIELQLGVNHMGHFLLT 258
L+ E + +++L N AG+ + +L + E+ + N FLLT
Sbjct: 54 LSDD------LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLT 107
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++ S IIN+ S+A S +
Sbjct: 108 RAYLPQMLERKS------------------GIIINMCSIA------------SFVAGGGG 137
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A FT++LA GI V + PG V T
Sbjct: 138 AAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKT 175
|
Length = 235 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 37/212 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTG T IG A+AR L A+V + D D V S + D
Sbjct: 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD-----NGAAVAASLGERARFIATD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-LGVNHMGHFLLTML 260
+ +I V ++++L+N A + + L L VN + +
Sbjct: 61 ITDDAAIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVS----AAM 116
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L +L+R I+N +S++ K +
Sbjct: 117 LAQAAHPHLAR---------------GGGAIVNFTSISAKFAQTGR------------WL 149
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y SK A TR +A L GI VN+V PG
Sbjct: 150 YPASKAAIRQLTRSMAMDLAPDGIRVNSVSPG 181
|
Length = 261 |
| >gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 57/259 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ V+VTGA GIG A++ LA +VI R + + CDL
Sbjct: 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAI-----------DDFPGELFA--CDL 50
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
A E A ++ E ++ ++NN G++ + + KI+L
Sbjct: 51 ADIEQTAATLAQIN-EIHPVDAIVNNVGIALPQPL---GKIDL----------------- 89
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSENSY 315
LQ Y L V Q RI+N+ S A +
Sbjct: 90 AALQ---DVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA------------IFGAL 134
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
D T +Y+ +K A V TR A L GITVNAV PG + T++ R + S VL
Sbjct: 135 DRT-SYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLA 193
Query: 376 PLVWLFIKSPRQGAQTIVY 394
+ + +P + A I +
Sbjct: 194 SIPMRRLGTPEEVAAAIAF 212
|
Length = 234 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 47/221 (21%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++TGA+ GIG AIARELA +++ R ++ ++ E L + + DL
Sbjct: 4 PTALITGASRGIGAAIARELAPTH-TLLLGGRPAERLDELAAE--LPGATPFPV----DL 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTML 260
E+I A E++ +++VL++NAGV+ + T ++ L VN + LT L
Sbjct: 57 TDPEAIAAAVEQL----GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRL 112
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
LL L+A A ++ ++S A R N +
Sbjct: 113 LLPALRA-------------------AHGHVVFINSGAGLRA-------NPGWG-----S 141
Query: 321 YNQSKLANVLFTRELAKRLEGTG-ITVNAVHPGIVNTDILR 360
Y SK A L R E G + V +VHPG +TD+ R
Sbjct: 142 YAASKFALRALADAL--REEEPGNVRVTSVHPGRTDTDMQR 180
|
Length = 227 |
| >gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 5e-10
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V+VT ++ GIG +AREL K+ A+V+++ R+ + EKA KE+ + V K DL+
Sbjct: 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAV---KADLSD 59
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEE 241
++ ++ +E + I+ L+ NAG C + E
Sbjct: 60 KDDLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHE 96
|
Length = 259 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 51/225 (22%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+ +++TG ++GIG AR L +V CR ++E V + + + +
Sbjct: 2 DMKRSILITGCSSGIGAYCARALQSDGWRVFATCR--------KEEDVAALEAEGLEAFQ 53
Query: 200 CDLASQESIRAFAEEVKK-ENKKINVLINNA--GVSGCRKMLTEEKIELQLGVNHMGHFL 256
D A ESI A +V + +++ L NN G G + L E + Q N G
Sbjct: 54 LDYAEPESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHD 113
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS----VAHK-RGTINKEDLNS 311
LT ++ V ++ RI+ SS V K RG
Sbjct: 114 LTRRVIP------------------VMRKQGQGRIVQCSSILGLVPMKYRG--------- 146
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AYN SK A + L L+G+GI V+ + PG + T
Sbjct: 147 --------AYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIET 183
|
Length = 277 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 34/221 (15%)
Query: 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK 193
+ S G++ +VTG+ G+G IAR LA A V++ R+ E A +
Sbjct: 3 ILQRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAA 62
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNH 251
L D+A +E++ A + E+ ++++L+NN G R + L + I L +
Sbjct: 63 EALA--FDIADEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETD- 119
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
L+ +LL +L A + RII ++S+A G + +
Sbjct: 120 ----LVAPILLSRLAAQR-------------MKRQGYGRIIAITSIA---GQVARAG--- 156
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y +K R LA GIT NA+ PG
Sbjct: 157 ------DAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPG 191
|
Length = 256 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 39/237 (16%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S GK +++TG+ GIG +A LA+ A++I+ ++ E A ++ E +
Sbjct: 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP- 64
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHF 255
++ ++ + A E ++K+ I+VLINNAG+ R TE ++ + VN F
Sbjct: 65 -FNVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQR-RHPFTEFPEQEWNDVIAVNQTAVF 122
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
L++ QA ++RY + + +IIN+ S + SE
Sbjct: 123 LVS-------QA-VARYMV----------KRQAGKIINICS------------MQSELGR 152
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LRHSSYYDSWL 369
D Y SK A + TR + L I VN + PG T++ L + +WL
Sbjct: 153 DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWL 209
|
Length = 254 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 37/218 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K ++TG ++G G+A+A+ +V+ R E AR + ++ L R D
Sbjct: 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS----EAARADFEALHPDR-ALARLLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ ++I A + + I+VL+NNAG G + ++ Q VN G
Sbjct: 59 VTDFDAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFG------ 112
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ +A L + I+N++S+ G I +
Sbjct: 113 -AVAMTKAVLPG-----------MRARRRGHIVNITSMG---GLI---------TMPGIG 148
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y SK A + LAK + GI V AV PG TD
Sbjct: 149 YYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTD 186
|
Length = 277 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 20/100 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G +V++TGA++GIG+A A A+R A++++A RD E+A + V E CR
Sbjct: 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARD----EEALQAVAEE-------CRAL 54
Query: 201 ---------DLASQESIRAFAEEVKKENKKINVLINNAGV 231
D+ + ++A A + +I+V +NN GV
Sbjct: 55 GAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV 94
|
Length = 330 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 55/224 (24%), Positives = 87/224 (38%), Gaps = 54/224 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++V+VTG GIG IAR A V+ C R+ D
Sbjct: 6 GRVVLVTGGTRGIGAGIARAFLAAGATVV-VC--------GRRAPETVDGRPAEF-HAAD 55
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT-----EEKIELQLGVNHMGHFL 256
+ + + A + + + + +++VL+NNAG S EKI + +N + L
Sbjct: 56 VRDPDQVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKI---VELNLLAPLL 112
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQ-ESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ AN V Q + I+N+ SV+ +R +
Sbjct: 113 VA------QAANA------------VMQQQPGGGSIVNIGSVSGRRPS------------ 142
Query: 316 DP-TQAYNQSKLANVLFTRELAKRLE-GTGITVNAVHPGIVNTD 357
P T AY +K + TR LA +E + VNAV G+V T+
Sbjct: 143 -PGTAAYGAAKAGLLNLTRSLA--VEWAPKVRVNAVVVGLVRTE 183
|
Length = 252 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 38/220 (17%)
Query: 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYV 195
+ K+ ++TG IG AIAR L +V + + + E+
Sbjct: 1 MMTDSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGS-A 59
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMG 253
+ DL +++ +++ L+NNA + +TE + + N
Sbjct: 60 AALQADLLDPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKA 119
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI-NKEDLNSE 312
F L+ +L+ RG I N D+++E
Sbjct: 120 PFFLSQAAAPQLRKQ--------------------------------RGAIVNITDIHAE 147
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y +K A + TR LA L + VNAV PG
Sbjct: 148 RPLKGYPVYCAAKAALEMLTRSLALEL-APEVRVNAVAPG 186
|
Length = 249 |
| >gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 51/236 (21%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK-YVLCRK 199
+ +I++VTGA GIG+ A A+ A VI+ R +K E E+ + ++
Sbjct: 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAII--P 68
Query: 200 CDL--ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE-----LQLGVNHM 252
DL A+ ++ + A+ ++++ +++ +++NAG+ G + ++ E +Q+ VN
Sbjct: 69 LDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNAT 128
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK-R---GTINKED 308
F+LT LL L + A S + SSV + R G
Sbjct: 129 --FMLTQALLPLLL-----------------KSPAASLVFTSSSVGRQGRANWG------ 163
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
AY SK A + LA +GT + VN ++PG T +R S++
Sbjct: 164 -----------AYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA-MRASAF 207
|
Length = 247 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 35/231 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNK-YVLCRK 199
+I++VTGA+ GIG+ A A+ A VI+ R+ +K + + E +
Sbjct: 3 NDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFILD 62
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ---LGVNHMGHFL 256
+ E+ + A+ + +++ +++NAG+ G L+E+ ++ VN F+
Sbjct: 63 LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNATFM 122
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT LL L S ++ SS ++G N
Sbjct: 123 LTQALLPLLLK------------------SDAGSLVFTSSSVGRQGRAN----------- 153
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
AY SK A + LA + + VN ++PG T +R S++
Sbjct: 154 -WGAYAVSKFATEGLXQVLADEYQQRNLRVNCINPGGTRTA-MRASAFPTE 202
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 43/231 (18%)
Query: 131 GAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE- 189
+ T T GK+ +VTGA G+G+A A LA+ A V++ D+ A +V+ E
Sbjct: 1 SPRTTNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVV--NDVASALDA-SDVLDEI 57
Query: 190 ----SKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKI 243
+K V A+ + + A A + +++++NNAG++ R + +++E+
Sbjct: 58 RAAGAKAVAVAGDISQRATADELVATAVGL----GGLDIVVNNAGITRDRMLFNMSDEEW 113
Query: 244 ELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS---RIINVSSVAHK 300
+ + V+ GHFLLT N + Y W + + RI+N SS A
Sbjct: 114 DAVIAVHLRGHFLLTR--------NAAAY------WRAKAKAAGGPVYGRIVNTSSEAGL 159
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHP 351
G + + + Y +K T A+ L G+ NA+ P
Sbjct: 160 VGPVGQAN------------YGAAKAGITALTLSAARALGRYGVRANAICP 198
|
Length = 306 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 57/218 (26%), Positives = 88/218 (40%), Gaps = 38/218 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+VTGA GIG+ +A LA A+V++ R + + E++ + D
Sbjct: 4 GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEIL--AAGDAAHVHTAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
L + + + +++VLINN G + K EE+IE ++ + L
Sbjct: 61 LETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAEIRRS-----LFP 115
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L R L +++ E I+NVSS+A RG I +
Sbjct: 116 TLW-------CCRAVLPHML------ERQQGVIVNVSSIA-TRG-IYR------------ 148
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y+ +K T LA GI VNAV PG
Sbjct: 149 IPYSAAKGGVNALTASLAFEHARDGIRVNAVAPGGTEA 186
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK V++TGA+ GIG A A A + + RD D E + + + V
Sbjct: 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAAD-LRAAHGVDVAVHAL 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAG 230
DL+S E+ A E I++L+NNAG
Sbjct: 65 DLSSPEAREQLAAEA----GDIDILVNNAG 90
|
Length = 259 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K VTGA +GIG+A A LA + A++ + RD D + + R D+
Sbjct: 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR-ALGGTVPEHRALDI 59
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMG 253
+ +++ AFA ++ + ++V++N AG+S G LT E+ + VN MG
Sbjct: 60 SDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMG 112
|
Length = 272 |
| >gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ +V G +G+ + LA+ V +A + + EK E+ E K D
Sbjct: 2 NQVAVVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEYGEKAY-GFGAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+++S+ A ++ V + K++++L+ +AG++ K+ E +G F +
Sbjct: 61 ATNEQSVIALSKGVDEIFKRVDLLVYSAGIAKSAKITDFE----------LGDFDRS--- 107
Query: 262 LDKLQANLSRYSLC-NLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
LQ NL Y LC + ++ RII ++S + K G+ NS
Sbjct: 108 ---LQVNLVGYFLCAREFSKLMIRDGIQGRIIQINSKSGKVGS-------KHNS-----G 152
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Y+ +K V T+ LA L GITVN++ G
Sbjct: 153 YSAAKFGGVGLTQSLALDLAEHGITVNSLMLG 184
|
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ VI+TG + G+G+AIA +L ++ VI R +K E S + D+
Sbjct: 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY-NSNLTFHSLDLQDV 60
Query: 203 ASQES-IRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
E+ ++++N LINNAG+ K + + E++ + +N + +LT
Sbjct: 61 HELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILT 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ + W R+IN+SS A K N Y
Sbjct: 121 STFMKHTKD-----------W------KVDKRVINISSGAAK------------NPYFGW 151
Query: 319 QAYNQSKLANVLFTRELA--KRLEGTGITVNAVHPGIVNTDI---LRHSS 363
AY SK +FT+ +A + E + + A PG+++T++ +R SS
Sbjct: 152 SAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSS 201
|
Length = 251 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-09
Identities = 53/220 (24%), Positives = 76/220 (34%), Gaps = 45/220 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTGA GIG+A+AR +V+ D A + + CDL
Sbjct: 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAA----ALAAFADALGDARFVPVACDL 58
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTMLL 261
S+ A E ++VL+ NAG + R L + N
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAA--RAASLHDTTPASWRADNA---------- 106
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSR----IINVSSVAHKRGTINKEDLNSENSY-D 316
NL LC E R ++N+ SV N +
Sbjct: 107 -----LNLEAAYLC----VEAVLEGMLKRSRGAVVNIGSV------------NGMAALGH 145
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P AY+ +K + +T+ LA GI NAV PG V T
Sbjct: 146 P--AYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKT 183
|
Length = 257 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 48/227 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ +VTGA G+G AIA A+ A V++A R + ++ +++ + +V+ D
Sbjct: 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA--AD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT------EEKIELQLGVNHMGHF 255
LA E+ A + + ++++++NN G + +L+ + + H
Sbjct: 68 LAHPEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH---- 123
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK---RGTINKEDLNSE 312
L+ ++ ++ + S +IN+SS + RG
Sbjct: 124 ------------ALTVAAVPLML-----EHSGGGSVINISSTMGRLAGRGFA-------- 158
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
AY +K A +TR A L I VNA+ PG + T L
Sbjct: 159 -------AYGTAKAALAHYTRLAALDL-CPRIRVNAIAPGSILTSAL 197
|
Length = 263 |
| >gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 65/226 (28%), Positives = 90/226 (39%), Gaps = 62/226 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+V+VTGA GIG+ +A A A+V++ D+ E EV L + L
Sbjct: 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLV----DRSELVH-EVAAELRAAGGEALALT 62
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGH 254
DL + +A + +I+VLINN G G EE+IE ++
Sbjct: 63 ADLETYAGAQAAMAAAVEAFGRIDVLINNVG--GTIWAKPFEEYEEEQIEAEI------- 113
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIW-------YYVFQESAPSRIINVSSVAHKRGTINKE 307
R SL +W + + Q I+NVSS+A RG IN+
Sbjct: 114 ----------------RRSLFPTLWCCRAVLPHMLAQGGGA--IVNVSSIA-TRG-INR- 152
Query: 308 DLNSENSYDPTQAYNQSKLA-NVLFTRELAKRLEGTGITVNAVHPG 352
Y+ +K N L T LA GI VNAV PG
Sbjct: 153 -----------VPYSAAKGGVNAL-TASLAFEYAEHGIRVNAVAPG 186
|
Length = 260 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 54/227 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTG++ GIG A+A LA+ A+VI+ RD K A + L+ + D
Sbjct: 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAES--LKGQGLSAHALAFD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
+ +++RA + + E I++L+NNAG+ R L + + E +L
Sbjct: 68 VTDHDAVRAAIDAFEAEIGPIDILVNNAGMQF-RTPLEDFPADAFE-RL----------- 114
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESA-------PSRIINVSSV--AHKRGTINKEDL 309
L+ N+S +YV Q A +IIN++SV A R I
Sbjct: 115 ------LRTNISSV-------FYVGQAVARHMIARGAGKIINIASVQSALARPGI----- 156
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
Y +K A T+ +A G+ NA+ PG +T
Sbjct: 157 ---------APYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDT 194
|
Length = 255 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 40/221 (18%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLA 203
V+VTGA+ GIG+AIA LA ++ + E + + N +L + D+A
Sbjct: 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLL--QFDVA 58
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ + R E E+ ++ NAG++ L+EE ++ + N
Sbjct: 59 DRVACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTN----------- 107
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRII---NVSSVAHKRGTINKEDLNSENSYDPT 318
LD Y++ + + + RII +VS V RG +N
Sbjct: 108 LD------GFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVN------------- 148
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y+ +K + T+ LA L ITVN + PG+++T++L
Sbjct: 149 --YSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEML 187
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 37/220 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K + +TGA +GIG+ A A+ V + D D E+ E+ V+ D+
Sbjct: 1 KAIFITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAELGAEN----VVAGALDV 56
Query: 203 ASQESIR-AFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ + A A+ +++ L NNAGV G + + + + +N G
Sbjct: 57 TDRAAWAAALADFAAATGGRLDALFNNAGVGRGGPFEDVPLAAHDRMVDINVKGVLNGAY 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L L+A + +R+IN +S + + DL
Sbjct: 117 AALPYLKA------------------TPGARVINTASSS---AIYGQPDL---------A 146
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
Y+ +K A T L GI V V P V+T IL
Sbjct: 147 VYSATKFAVRGLTEALDVEWARHGIRVADVWPWFVDTPIL 186
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 141 RGKIVIVTGA-NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK+V+VT A TGIG A AR + A+V+++ + + E+ E V
Sbjct: 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVV 75
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSG 233
CD+ S+ + A + + +++VL+NNAG+ G
Sbjct: 76 CDVTSEAQVDALIDAAVERLGRLDVLVNNAGLGG 109
|
Length = 262 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 43/221 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLCR 198
K+ +TGA+ G G+A +R +V+ RD + KY +L
Sbjct: 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLA--------DLAEKYGDRLLPL 54
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGHFL 256
D+ + ++ A E + ++++++NNAG + G + +TE + Q+ N G
Sbjct: 55 ALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALW 114
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T QA L +E II +SS+ G I +++
Sbjct: 115 VT-------QAVLP-----------YLREQRSGHIIQISSI----GGI--------SAFP 144
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ Y+ SK A + LA+ + GI V V PG +TD
Sbjct: 145 MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTD 185
|
Length = 275 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 66/239 (27%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES------KNKYVLC 197
V +TGA++GIG+A+ARE A++ A + + AR+ L++ K V
Sbjct: 4 KVFITGASSGIGQALAREYARQGATLGLV---------ARRTDALQAFAARLPKAARVSV 54
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-----LGVNHM 252
D+ +++ A A + + +V+I NAG+S LTEE+ +L + N+
Sbjct: 55 YAADVRDADALAAAAADFIAAHGLPDVVIANAGIS--VGTLTEEREDLAVFREVMDTNYF 112
Query: 253 GH------FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
G F+ M + + ++ ++SVA RG
Sbjct: 113 GMVATFQPFIAPM------------------------RAARRGTLVGIASVAGVRGL--- 145
Query: 307 EDLNSENSYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
P AY+ SK A + + L L G+ V + PG + T + H+ Y
Sbjct: 146 ----------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNPY 194
|
Length = 257 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 50/220 (22%), Positives = 75/220 (34%), Gaps = 70/220 (31%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+IV GA IG A+A+ L+ +VI A R + D+
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGHEVITAGRSSGD-------------------YQVDITD 41
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
+ SI+A E+V + +++ AG + LT+ + L +G
Sbjct: 42 EASIKALFEKV----GHFDAIVSTAGDAEFAPLAELTDADFQRGLNSKLLG--------- 88
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN-SYDPTQAY 321
Q NL R+ L +N G+I L S + P
Sbjct: 89 ---QINLVRHGL---------------PYLN------DGGSIT---LTSGILAQRPIP-- 119
Query: 322 NQSKLANV-----LFTRELAKRLEGTGITVNAVHPGIVNT 356
+ A V F R A L GI +NAV PG+V
Sbjct: 120 GGAAAATVNGALEGFVRAAAIELP-RGIRINAVSPGVVEE 158
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|187630 cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 142 GKIVIVTG-ANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEV--VLESKNKYVLC 197
GK +++TG AN I IA+ L + A++ + E RK V + E + L
Sbjct: 1 GKRILITGIANDRSIAWGIAKALHEAGAELAFTYQP----EALRKRVEKLAERLGESALV 56
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLI 226
CD+++ E I+ EVKK+ K++ L+
Sbjct: 57 LPCDVSNDEEIKELFAEVKKDWGKLDGLV 85
|
This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 7e-08
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 45/226 (19%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S GK+ +VTG +TG+G+ +A LA+ ++ ++ E + + + L
Sbjct: 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIV----GINIVEPTETIEQVTALGRRFLSL 62
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-------LGVNH 251
DL + I A E E I++L+NNAG+ + E+ IE + +N
Sbjct: 63 TADLRKIDGIPALLERAVAEFGHIDILVNNAGL-----IRREDAIEFSEKDWDDVMNLNI 117
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F ++ A + +IIN++S+ +G I
Sbjct: 118 KSVFFMSQAAAKHFIA-----------------QGNGGKIINIASMLSFQGGIR------ 154
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+Y SK + TR +A I VNA+ PG + T+
Sbjct: 155 ------VPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATN 194
|
Length = 253 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 7e-08
Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 43/220 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTGA GIG IA L +V++A DLD+ ++ L +N + + D
Sbjct: 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLA--DLDRERGSKVAKAL-GENAWFIAM--D 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ-----LGVNHMGHFL 256
+A + + A EV + +++ L+ NA ++ T E + L L VN G L
Sbjct: 65 VADEAQVAAGVAEVLGQFGRLDALVCNAAIADPHNT-TLESLSLAHWNRVLAVNLTGPML 123
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L L+ AH +N + S
Sbjct: 124 LAKHCAPYLR-------------------------------AHNGAIVNLASTRARQSEP 152
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
T+AY SK + T LA L G I VNAV PG ++
Sbjct: 153 DTEAYAASKGGLLALTHALAISL-GPEIRVNAVSPGWIDA 191
|
Length = 255 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 143 KIVIVTGANTGIGKAIARELA---KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR- 198
+V++TG ++GIG +A LA ++ KV RDL +K + E+
Sbjct: 1 TVVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDL-----KKKGRLWEAAGAL-AGGT 54
Query: 199 ----KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHM 252
+ D+ +S+ A E V + ++VL+ NAGV G + L+E+ + VN
Sbjct: 55 LETLQLDVCDSKSVAAAVERVT--ERHVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVF 112
Query: 253 G 253
G
Sbjct: 113 G 113
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 58/257 (22%), Positives = 92/257 (35%), Gaps = 70/257 (27%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMAC--------RDLDKCEKARKEVVLESKNKY 194
K V++TG ++G G +A++L V+ C ++L + R +
Sbjct: 1 KAVLITGCDSGFGNLLAKKLDSLGFTVLAGCLTKNGPGAKELRRVCSDRLRTLQ------ 54
Query: 195 VLCRKCDLASQESIRAFAEEVKKE--NKKINVLINNAGVSGC---RKMLTEEKIELQLGV 249
D+ E I+ A+ VK+ K + L+NNAG+ G ++L + + V
Sbjct: 55 -----LDVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEV 109
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G +T L L+ A R++NVSS+ G +
Sbjct: 110 NLFGTVEVTKAFLPLLR-------------------RAKGRVVNVSSMG---GRV----- 142
Query: 310 NSENSYDPTQAYNQSKLANVLFT----RELAKRLEGTGITVNAVHPG-----IVNTDILR 360
+ AY SK A F+ REL G+ V+ + PG I L
Sbjct: 143 ----PFPAGGAYCASKAAVEAFSDSLRRELQPW----GVKVSIIEPGNFKTGITGNSELW 194
Query: 361 HSSYYDSW--LSTVVLK 375
W L V K
Sbjct: 195 EKQAKKLWERLPPEVKK 211
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 52/219 (23%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK-ARKEVVLESKNKYVLCRKCDLA 203
+V GA++GIG A A ELA V + R ++KCE+ K + + + D+
Sbjct: 13 ALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDK---IRADGGEAVAFPLDVT 69
Query: 204 SQESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEE---KIELQL-GVNHMGHFL 256
+S+++F + ++ +I VL++ AG ++ TE+ ++++ L G N + +
Sbjct: 70 DPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAV 129
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VA-HKRGTINKEDLNSENS 314
L ++ E +I V S VA +R
Sbjct: 130 LPGMI-----------------------ERRRGDLIFVGSDVALRQR------------- 153
Query: 315 YDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
P AY +K L LEGTG+ + VHPG
Sbjct: 154 --PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPG 190
|
Length = 274 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK-------ARKEVVLESKNKY 194
GK + +TGA+ GIGKAIA + A+ A V++A + + K A +E+ E+
Sbjct: 3 GKTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEI--EAAGGK 60
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE--EKIELQLGVNHM 252
L D+ ++ +RA E+ ++ I++L+NNA L ++ +L +GVN
Sbjct: 61 ALPCIVDIRDEDQVRAAVEKAVEKFGGIDILVNNASAISLTGTLDTPMKRYDLMMGVNTR 120
Query: 253 GHFLLTMLLLDKL 265
G +L + L L
Sbjct: 121 GTYLCSKACLPYL 133
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|180766 PRK06940, PRK06940, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 48/232 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++V+V GA GIG+AIAR + K KV++A + + E A K L V ++ D+
Sbjct: 3 EVVVVIGAG-GIGQAIARRVGAGK-KVLLADYNEENLEAAAKT--LREAGFDVSTQEVDV 58
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
+S+ES++A A + + L++ AGVS ++ E L V+ G T L+L
Sbjct: 59 SSRESVKALAATA-QTLGPVTGLVHTAGVSP-----SQASPEAILKVDLYG----TALVL 108
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR------------GTINKEDLN 310
++ ++ + ++S + R T E+L
Sbjct: 109 EEFGKVIAPGGAG----------------VVIASQSGHRLPALTAEQERALATTPTEELL 152
Query: 311 S------ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
S + D AY +K AN L A + G +N++ PGI++T
Sbjct: 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIIST 204
|
Length = 275 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
IV+VTGA G G+ I R ++ KVI R ++ ++ + E+ N Y+ + D+
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---GDNLYIA--QLDVR 56
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVS 232
++ +I + E + I+VL+NNAG++
Sbjct: 57 NRAAIEEMLASLPAEWRNIDVLVNNAGLA 85
|
Length = 248 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 43/223 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ V+VTG + G+G AIAR A+ A+V++ + E + + + + D+
Sbjct: 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQ----SEDAAEALADELGDRAIALQADV 61
Query: 203 ASQESIRA-FAEEVKKENKKINVLINNAGVS-----GCRKM---LTEEKIELQLGVNHMG 253
+E ++A FA + K I ++NNA RK +T E + QL + G
Sbjct: 62 TDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKG 121
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
QA L +E RIIN+ + +L +N
Sbjct: 122 ALNTI-------QAALPG-----------MREQGFGRIINIGT-----------NL-FQN 151
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
P Y +K A + TR LA L GITVN V G++ T
Sbjct: 152 PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRT 194
|
Length = 253 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK-------ARKEVVLESK 191
S GK + +TGA+ GIG AIA A+ A +++A + + K A +E+ E+
Sbjct: 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEI--EAA 60
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAG---VSGCRKMLTEE----KIE 244
L D+ ++ + A + + I++ +NNA ++G TE+ + +
Sbjct: 61 GGQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTG-----TEDTPMKRFD 115
Query: 245 LQLGVNHMGHFLLTMLLLDKLQ 266
L +N G FL++ L L+
Sbjct: 116 LMQQINVRGTFLVSQACLPHLK 137
|
Length = 273 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 48/220 (21%), Positives = 75/220 (34%), Gaps = 47/220 (21%)
Query: 146 IVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ 205
IVTG + G+G A+A +L + V+ R A L DL+
Sbjct: 5 IVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVE-------LDLSDA 57
Query: 206 ESIRAFAEEVKKEN----KKINVLINNAGVS---GCRKMLTEEKIELQLGVNHMGHFLLT 258
+ A+ +LINNAG G L I +G+N +LT
Sbjct: 58 AAAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLT 117
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L R RI+++SS A + N+Y
Sbjct: 118 AALAQAASDAAER------------------RILHISSGA------------ARNAYAGW 147
Query: 319 QAYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTD 357
Y +K A R +A L+ + + ++ PG+V+T
Sbjct: 148 SVYCATKAALDHHARAVA--LDANRALRIVSLAPGVVDTG 185
|
Length = 243 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKR-KAKVIMACR---DLDKCEKARKEVVLESKNKYVL 196
G + +VTG GIG+A+AR LA+R A++++ R ++ KA+ LE+ VL
Sbjct: 204 PGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVL 263
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGV 231
D+ ++R E+V++ I+ +I+ AGV
Sbjct: 264 YISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGV 298
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV-VLESKNKYVLC 197
GK +VTG++ GIG A+ LA A V++ R K +A K V +E+
Sbjct: 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR--QKAPRANKVVAEIEAAGGRASA 60
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNA 229
DL +ES+ A + ++E ++ L+ NA
Sbjct: 61 VGADLTDEESVAALMDTAREEFGGLDALVLNA 92
|
Length = 248 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 51/227 (22%), Positives = 82/227 (36%), Gaps = 43/227 (18%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K + +TGA +GIG+A A A +V D++ E + E D+
Sbjct: 2 KSIFITGAASGIGRATALLFAAEGWRVGAY--DIN--EAGLAALAAELGAGNAWTGALDV 57
Query: 203 ----ASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFL 256
A ++ FA +++VL NNAG+ G + + E + + +N G
Sbjct: 58 TDRAAWDAALADFAAA---TGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLN 114
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L L+A + +R+IN SS + + L
Sbjct: 115 GAHAALPYLKA------------------TPGARVINTSSAS---AIYGQPGLAV----- 148
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y+ +K A T L GI V V P V+T +L +S
Sbjct: 149 ----YSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS 191
|
Length = 260 |
| >gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 63/234 (26%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-------DKCEKARKEVVLE--SKN 192
G++VIVTGA GIG+A A A A+V++ D+ A + VV E +
Sbjct: 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVV--NDIGVGLDGSASGGSAAQAVVDEIVAAG 63
Query: 193 KYVLCRKCDLAS--------QESIRAFAEEVKKENKKINVLINNAGVSGCR-KM---LTE 240
+ D+A ++ F ++VL+NNAG+ R +M ++E
Sbjct: 64 GEAVANGDDIADWDGAANLVDAAVETFGG--------LDVLVNNAGI--LRDRMIANMSE 113
Query: 241 EKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP--SRIINVSSVA 298
E+ + + V+ GHF + Y W + +RIIN SS A
Sbjct: 114 EEWDAVIAVHLKGHFATLRH--------AAAY------WRAESKAGRAVDARIINTSSGA 159
Query: 299 HKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHP 351
+G++ Q Y+ +K T A L G+TVNA+ P
Sbjct: 160 GLQGSVG-------------QGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAP 200
|
Length = 286 |
| >gnl|CDD|235608 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 46/223 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK V + G + G+G A+A K A+V + R+ +K ++ +K + YV+
Sbjct: 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVV---G 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
D++S ES R E+ K I+ L+ G E+ +E G+ M
Sbjct: 61 DVSSTESARNVIEKAAKVLNAIDGLVVTVG------GYVEDTVEEFSGLEEM-------- 106
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSENSY 315
L + ++ L Y S S I+ VSS+ G
Sbjct: 107 LTNHIKIPL-----------YAVNASLRFLKEGSSIVLVSSM---SGIYKAS-------- 144
Query: 316 DPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q +Y +K LA L G GI VN + P ++ D
Sbjct: 145 -PDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGD 186
|
Length = 238 |
| >gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 62/219 (28%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ T ++ GIG +AR LA+ A VI+ R+ + +KAR E + N V D
Sbjct: 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAR-EKIKSESNVDVSYIVAD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
L +E + E KE K I + G G+F + M +
Sbjct: 67 LTKREDL----ERTVKELKNIGE---------------PDIFFFSTGGPKPGYF-MEMSM 106
Query: 262 LDKLQA-NLSRYSLCNLIWYYV--FQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
D A L Y L V + RII +SVA K N
Sbjct: 107 EDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPN------------I 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
N +++ R LAK L GITVN + PGI+ TD
Sbjct: 155 ALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTD 193
|
Length = 263 |
| >gnl|CDD|180586 PRK06483, PRK06483, dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+++TGA IG A+A L + VI++ R + + C + D ++
Sbjct: 5 ILITGAGQRIGLALAWHLLAQGQPVIVSYR-------THYPAIDGLRQAGAQCIQADFST 57
Query: 205 QESIRAFAEEVKKENKKINVLINNA 229
I AF +E+K+ + +I+NA
Sbjct: 58 NAGIMAFIDELKQHTDGLRAIIHNA 82
|
Length = 236 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+VTG G+G +AR LA+R A+ V+++ E LE++ V CD+
Sbjct: 3 YLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDV 62
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGV 231
+ ++++RA E++ + + +I+ AGV
Sbjct: 63 SDRDAVRALLAEIRADGPPLRGVIHAAGV 91
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-06
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K ++VTGA+ G+G+ +A+ A A VI+ R K EK +V E+ + + D
Sbjct: 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV-EAGHPEPFAIRFD 64
Query: 202 L--ASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHF 255
L A ++ FA + + + K++ +++ AG L + + Q +N +
Sbjct: 65 LMSAEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPM 124
Query: 256 LLTMLLLDKLQ 266
LT L L+
Sbjct: 125 GLTRALFPLLK 135
|
Length = 239 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-06
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 145 VIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++TG G+G+A+AR LA+R A+ V+++ D A LE+ V CD+
Sbjct: 3 YLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVACDV 62
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGV 231
A ++++ A + + +I+ AGV
Sbjct: 63 ADRDALAAVLAAIPAVEGPLTGVIHAAGV 91
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 57/232 (24%), Positives = 85/232 (36%), Gaps = 57/232 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE-----VVLESKNKYVL 196
G++ ++TG +GIG+A+ A+V + R +K R+ +V+E V
Sbjct: 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGD---VT 62
Query: 197 CRKC-DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQL----G 248
A +++ AF K++ + NAG+ L + E ++
Sbjct: 63 SYADNQRAVDQTVDAFG--------KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFN 114
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VN G+ L L L+A S S+ +F S SS G
Sbjct: 115 VNVKGYLLGAKAALPALKA--SGGSM-------IFTLSN-------SSFYPGGGGP---- 154
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A V R+LA L I VN V PG TD LR
Sbjct: 155 -----------LYTASKHAVVGLVRQLAYEL-APKIRVNGVAPGGTVTD-LR 193
|
Length = 263 |
| >gnl|CDD|223696 COG0623, FabI, Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 141 RGKIVIVTG--ANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
GK +++ G N I IA+ LA++ A++ + ++ EK +E+ E + VL
Sbjct: 5 EGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQG-ERLEKRVEELAEELGSDLVLP- 62
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLI 226
CD+ + ESI A +KK+ K++ L+
Sbjct: 63 -CDVTNDESIDALFATIKKKWGKLDGLV 89
|
Length = 259 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 144 IVIVTGANTGIGKAIARELAKR-KAK---VIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+ +VTGA+ G G+ IA+ELAK K+ ++++ R+ + + + E+ E V+
Sbjct: 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVS 61
Query: 200 CDLAS----QESIRAFAEEVKKENKKINVLINNAGVSG 233
DL + ++ ++A E + + + +LINNAG G
Sbjct: 62 LDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLG 99
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
+ V GA G+G AIAR A V +A R K E +++ D
Sbjct: 1 VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDII-RDAGGSAKAVPTDAR 59
Query: 204 SQESIRAFAEEVKKENKKINVLINNAG 230
++ + A + +++E + VL+ NAG
Sbjct: 60 DEDEVIALFDLIEEEIGPLEVLVYNAG 86
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TGA++GIG+A A+ A+ AKV++ R + ++ E+ ++ + D
Sbjct: 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI--RAEGGEAVALAGD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG 233
+ + +A + +++ NNAG G
Sbjct: 64 VRDEAYAKALVALAVERFGGLDIAFNNAGTLG 95
|
Length = 254 |
| >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R KI+I TGA++G+G +ARE A + + + R D+ E+ + E++ V
Sbjct: 2 RQKILI-TGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAAL 60
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV 231
D+ + + E + E ++ +I NAG+
Sbjct: 61 DVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91
|
Length = 248 |
| >gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 62/224 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR------DLDKCEKARKEVVLESKNKYV 195
K +++TGA +G G+ +A LA++ VI + L + E AR+ + L +
Sbjct: 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTAL-RAEAARRGLALRVE---- 56
Query: 196 LCRKCDLASQESI-RAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIEL---QLGV 249
K DL +A + ++VL+NNAG+ +G + + +EL
Sbjct: 57 ---KLDLTDAIDRAQAAEWD-------VDVLLNNAGIGEAGA---VVDIPVELVRELFET 103
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G LT + K+ A +++ SS+A G I
Sbjct: 104 NVFGPLELTQGFVRKMVARGK------------------GKVVFTSSMA---GLIT---- 138
Query: 310 NSENSYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
P T AY SK A + L+ GI V V+PG
Sbjct: 139 ------GPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPG 176
|
Length = 257 |
| >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 49/217 (22%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V++TGA +GIGK +A + AK+ +VI R+ + E+ +S N + L D+
Sbjct: 4 VLITGATSGIGKQLALDYAKQGWQVIACGRN----QSVLDELHTQSANIFTL--AFDVTD 57
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQL-----GVNHMGHFLLTM 259
+A ++ + I NAG C M + K++ L VN +G
Sbjct: 58 HPGTKAALSQLPFIP---ELWIFNAG--DCEYM-DDGKVDATLMARVFNVNVLG----VA 107
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ +Q +LS R++ V S+A SE + +
Sbjct: 108 NCIEGIQPHLSC----------------GHRVVIVGSIA------------SELALPRAE 139
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
AY SK A F R L L GI V V PG V T
Sbjct: 140 AYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVAT 176
|
Length = 240 |
| >gnl|CDD|237099 PRK12428, PRK12428, 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 47/176 (26%)
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
DL SI A + +I+ L N AGV G +EL VN +G LT
Sbjct: 31 DLGDPASIDAAVAAL---PGRIDALFNIAGVPGT------APVELVARVNFLGLRHLTEA 81
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA----HKRGTINKEDLNSENSYD 316
LL ++ + I+NV+S+A +R ++K + S+D
Sbjct: 82 LLPRM--------------------APGGAIVNVASLAGAEWPQRLELHKALAATA-SFD 120
Query: 317 PTQA------------YNQSKLANVLFT-RELAKRLEGTGITVNAVHPGIVNTDIL 359
A Y SK A +L+T R+ GI VN V PG V T IL
Sbjct: 121 EGAAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPIL 176
|
Length = 241 |
| >gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ ++TG +GIG A E A+R A+V++ D+DK + L ++ V CD
Sbjct: 6 GRGAVITGGASGIGLATGTEFARRGARVVLG--DVDKPGLRQAVNHLRAEGFDVHGVMCD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGV 231
+ +E + A+E + ++V+ +NAG+
Sbjct: 64 VRHREEVTHLADEAFRLLGHVDVVFSNAGI 93
|
Length = 275 |
| >gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-05
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 51/238 (21%)
Query: 130 GGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR--KEVV 187
G Y + + +VTG ++GIG+A A A+ A V ++ +++ E A+ K+++
Sbjct: 37 GEKTYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEE-EDAQDVKKII 95
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR------KMLTEE 241
E K VL DL+ ++ R+ E K ++++ A V+G + LT E
Sbjct: 96 EECGRKAVLL-PGDLSDEKFARSLVHEAHKALGGLDIM---ALVAGKQVAIPDIADLTSE 151
Query: 242 KIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301
+ + +N F LT + L S II SS+
Sbjct: 152 QFQKTFAINVFALFWLTQEAIPLLPKGAS--------------------IITTSSI---- 187
Query: 302 GTINKEDLNSENSYDPTQA---YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
+Y P+ Y +K A + ++R LAK++ GI VN V PG + T
Sbjct: 188 -----------QAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWT 234
|
Length = 294 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V+V G +GI IA+ A+ A V +A R +K + A + L+ L D
Sbjct: 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQ--LQQAGPEGLGVSAD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNA 229
+ ++ A ++ E I+VL++ A
Sbjct: 67 VRDYAAVEAAFAQIADEFGPIDVLVSGA 94
|
Length = 264 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 9e-05
Identities = 45/217 (20%), Positives = 65/217 (29%), Gaps = 50/217 (23%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++VTG IG + L V R D + V DL
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVE---------FVVLDL 51
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
++ + A+ V +I+ A S L VN G T+ LL
Sbjct: 52 TDRDLVDELAKGVPD------AVIHLAAQSS-VPDSNASDPAEFLDVNVDG----TLNLL 100
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA-----HKRGTINKEDLNSENSYDP 317
+ +A + R + SSV+ I+ EDL P
Sbjct: 101 EAARAAGVK------------------RFVFASSVSVVYGDPPPLPID-EDLGPPR---P 138
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
Y SKLA R A+ G+ V + P V
Sbjct: 139 LNPYGVSKLAAEQLLRAYARL---YGLPVVILRPFNV 172
|
Length = 314 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 121 DVVLRGDVLGGAKYTEETSAR----------GKIVIVTGANTGIGKAIARELAKRKAK-V 169
++ LRG + +A ++TG G+G +AR LA R A+ +
Sbjct: 119 ELALRGGQRLVPRLVRAPAAALELAAAPGGLDGTYLITGGLGGLGLLVARWLAARGARHL 178
Query: 170 IMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218
++ R A + +L + V +CD+ ++ A E+
Sbjct: 179 VLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAAG 227
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG GIGK A +LA++ +++ R+ DK + + + + D
Sbjct: 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112
Query: 202 LAS--QESIRAFAEEVKKENKKINVLINNAGVS 232
+ E ++ E + E + VLINN GVS
Sbjct: 113 FSGDIDEGVKRIKETI--EGLDVGVLINNVGVS 143
|
Length = 320 |
| >gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 37/222 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG +GIGK +A L A V++ R+ DK A +E+ V D+
Sbjct: 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADV 67
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE-----LQLGVNHMGHFLL 257
++ + + + +++ +++ AG S +T+ + + L VN
Sbjct: 68 TDEDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNG------ 121
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
TM +L L R + +SS+A + N++
Sbjct: 122 TMYVLKHAARELVR--------------GGGGSFVGISSIA------------ASNTHRW 155
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
AY +K A + A L + + VN++ PG++ TD++
Sbjct: 156 FGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLV 197
|
Length = 276 |
| >gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
+GK +V G +G+ A LA+ A+V++ RDL++ +KA +
Sbjct: 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 146 IVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ 205
+V G ++GIG A+AR A A+V +A R D+ A + + V D+ +
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARAL---GGGAPVRTAALDITDE 57
Query: 206 ESIRAFAEEV 215
++ AF E
Sbjct: 58 AAVDAFFAEA 67
|
Length = 230 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 47/216 (21%), Positives = 66/216 (30%), Gaps = 80/216 (37%)
Query: 145 VIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
V+VTG + GIG AIAR LA R KV++ R
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVSRR---------------------------- 32
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+V+++NA + G LT +IE + N +G L
Sbjct: 33 -------------------DVVVHNAAILDDGRLIDLTGSRIERAIRANVVGTRRL---- 69
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L+A + + R I +SSVA G Y
Sbjct: 70 ---LEAARE-------LM----KAKRLGRFILISSVAGLFG------------APGLGGY 103
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
SK A ++ A G G+ AV G
Sbjct: 104 AASKAALDGLAQQWASEGWGNGLPATAVACGTWAGS 139
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+V++TG ++GIG+A+A +V R + E + D+
Sbjct: 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE--------ALAAAGFTAVQLDV 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAG 230
++ AEE++ E+ ++VLINNAG
Sbjct: 54 NDGAALARLAEELEAEHGGLDVLINNAG 81
|
Length = 274 |
| >gnl|CDD|236229 PRK08303, PRK08303, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-------DLDKCEKARK--EVVLESK 191
RGK+ +V GA G G+ IA EL A V + R + D+ E + E+V +
Sbjct: 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG 66
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT------EEKIE- 244
+ + + D E +RA E + +E ++++L+N+ + G K+ E ++
Sbjct: 67 GRGIAVQ-VDHLVPEQVRALVERIDREQGRLDILVND--IWGGEKLFEWGKPVWEHSLDK 123
Query: 245 ----LQLGVN-HM--GHFLLTMLL 261
L+L ++ H+ HF L +L+
Sbjct: 124 GLRMLRLAIDTHLITSHFALPLLI 147
|
Length = 305 |
| >gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 9e-04
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK ++++G GIGKAI E A+ + + + ++ + + KY + K
Sbjct: 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFT---YNSNVEEANKIAEDLEQKYGIKAKA 63
Query: 201 ---DLASQESIRAFAEEVKKENKKINVLINNAGVSG 233
++ E+ + +++ ++ +++ I+NA +SG
Sbjct: 64 YPLNILEPETYKELFKKIDEDFDRVDFFISNAIISG 99
|
Length = 260 |
| >gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
++ GA GIG+A+AR LA R +++++ RD EV L R D+A+
Sbjct: 1 ALILGATGGIGRALARALAGRGWRLLLSGRDAGALAGLAAEV-------GALARPADVAA 53
Query: 205 QESIRAFAEEV 215
+ + A A+E+
Sbjct: 54 ELEVWALAQEL 64
|
Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206 |
| >gnl|CDD|187633 cd08928, KR_fFAS_like_SDR_c_like, ketoacyl reductase (KR) domain of fungal-type fatty acid synthase (fFAS)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 43/221 (19%)
Query: 145 VIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK---- 199
V++TGA G IG + + L AKV + + ++V ++ Y C
Sbjct: 1 VLITGAGDGSIGAEVLQGLLNGGAKVYVTTS------RFSRQVTKYYQDIYAACGAAGSV 54
Query: 200 --CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ--LGVNHMGHF 255
+Q S + +N L + + G + E IE+ + + H
Sbjct: 55 LIVVPFNQGSKQDVEALAIGIYDTVNGLGWDLDLYGPFAAIPETGIEIPAIDSKSEVAHR 114
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL----NS 311
++ LL P ++ + + T + + +
Sbjct: 115 IMLTNLL------------------------RPKGLVKIQKQLRGQETRPAQVILPFSPN 150
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
++ AY++SKL A G +TV H G
Sbjct: 151 HGTFGDDGAYSESKLHLETLFNRWASESWGNDLTVCGAHIG 191
|
KR domain of FAS, including the fungal-type multidomain FAS alpha chain, and the single domain daunorubicin C-13 ketoreductase. Fungal-type FAS is a heterododecameric FAS composed of alpha and beta multifunctional polypeptide chains. The KR, an SDR family member is located centrally in the alpha chain. KR catalyzes the NADP-dependent reduction of ketoacyl-ACP to hydroxyacyl-ACP. KR shares the critical active site Tyr of the classical SDR and has partial identity of the active site tetrad, but the upstream Asn is replaced in KR by Met. As in other SDRs, there is a glycine rich NAD(P)-binding motif, but the pattern found in KR does not match the classical SDRs, and is not strictly conserved within this group. Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Single domain daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186
++VTGA +G A+ REL R +V A R+ + V
Sbjct: 3 ILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGV 44
|
Length = 275 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 49/219 (22%)
Query: 147 VTGANTGIGKAIARELAKRKAKVIMACR------DLDKCEKARKEVVLESKNKYVLCRKC 200
+TGA++G G+ + L R +V R DL R V+
Sbjct: 7 ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQ-----------L 55
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLT 258
D+ ++RA + +I+V+++NAG G + L++ +I Q+ N +G +
Sbjct: 56 DVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVI 115
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L+ RI+ VSS G I +Y
Sbjct: 116 RAALPHLRRQ------------------GGGRIVQVSSEG---GQI---------AYPGF 145
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y+ +K F +A+ + GI V PG T+
Sbjct: 146 SLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTN 184
|
Length = 276 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 52/263 (19%), Positives = 88/263 (33%), Gaps = 47/263 (17%)
Query: 145 VIVTGANTGIGKAIARELAKRKA--KVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCD 201
V++TGA+ +G+ +A L ++I+ +D KA S V D
Sbjct: 3 VLITGASGFVGQRLAERLLSDVPNERLIL----IDVVSPKA------PSGAPRVTQIAGD 52
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
LA I A A +V+ + A + E +L VN T L
Sbjct: 53 LAVPALIEALANGRP------DVVFHLAAIVSGG---AEADFDLGYRVN----VDGTRNL 99
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L+ L+ N R + SS+A + + DP +Y
Sbjct: 100 LEALRKN-----------------GPKPRFVFTSSLAVYGLPLPNPVTDHTA-LDPASSY 141
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
K L + ++R G T+ P + R + ++ ST++ +PLV
Sbjct: 142 GAQKAMCELLLNDYSRRGFVDGRTLRL--PTVCVRPG-RPNKAASAFASTIIREPLVGEE 198
Query: 382 IKSPRQGAQTIVYASLDPSLENV 404
P S+ ++ N
Sbjct: 199 AGLPVAEQLRYWLKSVATAVANF 221
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++V GA G+G +A +LA+ +V +A R +KC + + + + + + D
Sbjct: 2 MKILVIGAG-GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVE-----ALQVD 55
Query: 202 LASQESIRA 210
A +++ A
Sbjct: 56 AADVDALVA 64
|
Length = 389 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 40/220 (18%), Positives = 61/220 (27%), Gaps = 52/220 (23%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V VTG +G+ + + L + KV++ R E + + V + DL +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDL-T 59
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFL-LTMLLLD 263
Q N G+S EL V+H+ H
Sbjct: 60 QP---------------------NLGLS------AAASRELAGKVDHVIHCAASYDFQAP 92
Query: 264 K-------LQANLSRYSLCNLIWYYVFQESAPSRIINVSS--VAHKRGTINKEDLNSENS 314
+ L R VS+ VA R +E +
Sbjct: 93 NEDAWRTNIDGTEHVLELA--------ARLDIQRFHYVSTAYVAGNREGNIRETELNP-G 143
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
+ Y QSK R A ++ T P IV
Sbjct: 144 QNFKNPYEQSKAEAEQLVRAAATQIPLT-----VYRPSIV 178
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 153 GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRKCDLASQESIRAF 211
I AIA+ A+ A+V++ R V E + D+ S E I
Sbjct: 7 SIAWAIAKAAAEEGAEVVLTTWP----PALRMGAVDELAKELPADVIPLDVTSDEDIDEL 62
Query: 212 AEEVKKENKKINVLINNAGVS 232
E+VK++ KI+ L+++ +S
Sbjct: 63 FEKVKEDGGKIDFLVHSIAMS 83
|
Length = 239 |
| >gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNK 193
+ A + +VTGA IG+AIA +LA V + D+ E E+ +
Sbjct: 2 PPMSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRA 61
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGV 231
L + DLA + +RA I +L+NNA +
Sbjct: 62 VAL--QADLADEAEVRALVARASAALGPITLLVNNASL 97
|
Length = 258 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.004
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 18/151 (11%)
Query: 141 RGKIVIVTGANTGIGK-----AIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYV 195
G+++++ G G GK A+AREL VI E +EV+ + V
Sbjct: 1 PGEVILIVGPP-GSGKTTLARALARELGPPGGGVIYID-----GEDILEEVLDQLLLIIV 54
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAG------VSGCRKMLTEEKIELQLGV 249
+K + + +R +K + ++++ +L E ++ L L
Sbjct: 55 GGKKASGSGELRLRLALALARKLKPDV-LILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWY 280
+LT L L R I
Sbjct: 114 EKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| KOG1200|consensus | 256 | 100.0 | ||
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| KOG1208|consensus | 314 | 100.0 | ||
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG0725|consensus | 270 | 100.0 | ||
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1205|consensus | 282 | 100.0 | ||
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG1201|consensus | 300 | 100.0 | ||
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1207|consensus | 245 | 100.0 | ||
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| KOG4169|consensus | 261 | 100.0 | ||
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1199|consensus | 260 | 100.0 | ||
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 100.0 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 100.0 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 100.0 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 100.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.98 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| KOG1611|consensus | 249 | 99.98 | ||
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.98 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.97 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.97 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1610|consensus | 322 | 99.97 | ||
| PRK09135 | 249 | pteridine reductase; Provisional | 99.97 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.97 | |
| KOG1210|consensus | 331 | 99.97 | ||
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1014|consensus | 312 | 99.97 | ||
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.97 | |
| KOG1209|consensus | 289 | 99.96 | ||
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.96 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.96 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.96 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.96 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.96 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.95 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.94 | |
| KOG1204|consensus | 253 | 99.93 | ||
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.92 | |
| KOG1478|consensus | 341 | 99.92 | ||
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.88 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.87 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.86 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.85 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.82 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.82 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.81 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.8 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.8 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.79 | |
| KOG1502|consensus | 327 | 99.79 | ||
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.79 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.79 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.78 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.78 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.77 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.77 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.77 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.75 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.75 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.75 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.74 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.71 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.71 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.71 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.71 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.71 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.71 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.7 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.7 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.69 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.68 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.67 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.67 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.66 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.65 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.62 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.61 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.61 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.59 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.58 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.57 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.57 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.55 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.53 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.53 | |
| KOG1371|consensus | 343 | 99.52 | ||
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.51 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.5 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.5 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.47 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.41 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.4 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.39 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.39 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.37 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.31 | |
| KOG1430|consensus | 361 | 99.3 | ||
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.28 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.26 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.22 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.22 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.21 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.21 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.17 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.12 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.08 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.06 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.06 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.04 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.02 | |
| KOG4022|consensus | 236 | 99.01 | ||
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.99 | |
| KOG0747|consensus | 331 | 98.97 | ||
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.97 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.96 | |
| KOG1429|consensus | 350 | 98.92 | ||
| PRK12320 | 699 | hypothetical protein; Provisional | 98.87 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.78 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.64 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.64 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.64 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.57 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.56 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.51 | |
| KOG2865|consensus | 391 | 98.5 | ||
| KOG1891|consensus | 271 | 98.37 | ||
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.36 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.29 | |
| KOG1372|consensus | 376 | 98.27 | ||
| KOG1221|consensus | 467 | 98.26 | ||
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.16 | |
| KOG1431|consensus | 315 | 98.16 | ||
| KOG1202|consensus | 2376 | 98.11 | ||
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.1 | |
| KOG1203|consensus | 411 | 98.08 | ||
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.94 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.89 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.88 | |
| KOG3209|consensus | 984 | 97.86 | ||
| KOG2733|consensus | 423 | 97.85 | ||
| PRK09620 | 229 | hypothetical protein; Provisional | 97.84 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.82 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.81 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.8 | |
| KOG3259|consensus | 163 | 97.77 | ||
| PLN00106 | 323 | malate dehydrogenase | 97.61 | |
| KOG4039|consensus | 238 | 97.59 | ||
| KOG2774|consensus | 366 | 97.55 | ||
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.51 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.49 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.39 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.34 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.32 | |
| KOG0940|consensus | 358 | 97.3 | ||
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.2 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 97.19 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.19 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.19 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.16 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.12 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.1 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 97.08 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 97.06 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 97.05 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.04 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.01 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 96.98 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.96 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.95 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.94 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.91 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.89 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.89 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.87 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.82 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.78 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.73 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.72 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.69 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.67 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.66 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.66 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.65 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.63 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.62 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.62 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.6 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.59 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 96.54 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.53 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.49 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.49 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.46 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.45 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.44 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 96.4 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.4 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.36 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.35 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.33 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.29 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.26 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.26 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.22 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.2 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.18 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.16 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.16 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.14 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.14 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.12 | |
| KOG1198|consensus | 347 | 96.11 | ||
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.1 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.08 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.06 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 96.06 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.95 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.93 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.91 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.9 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.89 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.85 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.83 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.82 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.81 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.79 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.79 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.75 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.75 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.71 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.64 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.64 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.62 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.61 | |
| KOG1891|consensus | 271 | 95.59 | ||
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.56 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.48 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 95.23 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.19 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.16 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.14 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.09 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.07 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.96 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 94.96 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.95 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.95 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 94.94 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.91 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.91 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.91 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 94.89 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.87 | |
| KOG0023|consensus | 360 | 94.83 | ||
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 94.81 | |
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 94.81 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.79 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.77 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.71 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.71 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.69 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.67 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.67 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 94.66 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.62 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 94.61 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.58 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 94.55 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.55 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.54 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.52 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.49 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.48 | |
| KOG1197|consensus | 336 | 94.47 | ||
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 94.4 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.39 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 94.38 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.37 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.36 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.36 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 94.31 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.3 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 94.3 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.26 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.2 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.19 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.17 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.11 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.1 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.1 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.1 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.08 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 94.07 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.05 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.99 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.97 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.97 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.94 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.93 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 93.9 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.8 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 93.76 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.72 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 93.72 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.71 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.68 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.67 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.65 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.65 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.56 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.52 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 93.49 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 93.45 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 93.45 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 93.43 | |
| KOG3209|consensus | 984 | 93.41 | ||
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.4 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 93.34 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 93.34 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.3 | |
| PF12076 | 164 | Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194 | 93.28 |
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=316.16 Aligned_cols=243 Identities=26% Similarity=0.309 Sum_probs=217.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++.|+++||||++|||+++++.|+++|++|++.+++.+..++.+..+... .....+.||+++.++++..+++..+.
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY---GDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC---CccceeeeccCcHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999998888777776432 24567899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++++||||||+.... ..+..++|++.+.+|+.|.|++++++.+.|..+ .+.+++|||+||
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~----------------~~~~~sIiNvsS 151 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMN----------------QQQGLSIINVSS 151 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHh----------------cCCCceEEeehh
Confidence 99999999999998755 456889999999999999999999999986532 455679999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
+-+..+. -++.-|++||+++.+|+|+.|+|++++|||||+|+||+|.|||++..+ +...+.+...
T Consensus 152 IVGkiGN------------~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp---~~v~~ki~~~ 216 (256)
T KOG1200|consen 152 IVGKIGN------------FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMP---PKVLDKILGM 216 (256)
T ss_pred hhccccc------------ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcC---HHHHHHHHcc
Confidence 9999987 568889999999999999999999999999999999999999999886 5566778889
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+|+++++.+||+|..++||+++ .++|+||+.+.++||..
T Consensus 217 iPmgr~G~~EevA~~V~fLAS~-~ssYiTG~t~evtGGl~ 255 (256)
T KOG1200|consen 217 IPMGRLGEAEEVANLVLFLASD-ASSYITGTTLEVTGGLA 255 (256)
T ss_pred CCccccCCHHHHHHHHHHHhcc-ccccccceeEEEecccc
Confidence 9999999999999999999955 58999999999999863
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=327.81 Aligned_cols=249 Identities=24% Similarity=0.258 Sum_probs=211.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++++|++|+++++++++++.
T Consensus 3 ~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 3 KIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999998888877775432 2468889999999999999999985
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|++|++|||||..... .+.+.++|++++++|+.++++++++++|+|+ +++.|+||++
T Consensus 82 -~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~------------------~~~~g~Ii~i 142 (263)
T PRK08339 82 -NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAME------------------RKGFGRIIYS 142 (263)
T ss_pred -hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEEE
Confidence 589999999999976432 5678999999999999999999999999997 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------Cc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YD 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~ 366 (429)
||.++..+. +...+|+++|+|+++|+++++.|++++|||||+|+||+|+|++...... ..
T Consensus 143 sS~~~~~~~------------~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 210 (263)
T PRK08339 143 TSVAIKEPI------------PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSV 210 (263)
T ss_pred cCccccCCC------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCH
Confidence 999876654 5577899999999999999999999999999999999999998643210 01
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+...+.+....|.+++.+|+|+|++++||++++ ..++||+.+.+|||...+
T Consensus 211 ~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~-~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 211 EEALQEYAKPIPLGRLGEPEEIGYLVAFLASDL-GSYINGAMIPVDGGRLNS 261 (263)
T ss_pred HHHHHHHhccCCcccCcCHHHHHHHHHHHhcch-hcCccCceEEECCCcccc
Confidence 122233445567788999999999999999664 689999999999997654
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=310.84 Aligned_cols=231 Identities=28% Similarity=0.390 Sum_probs=200.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+++|||||||||.++|+.|+++|++|++++|+.++++++++++.. ..+..+.+|++|.++++++++.+.++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999998854 36889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
|++||+||||||..... .+.+.++|++++++|+.|.++.+++++|.|. +++.|.|||+||
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~------------------~r~~G~IiN~~S 140 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMV------------------ERKSGHIINLGS 140 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHH------------------hcCCceEEEecc
Confidence 99999999999986433 6678999999999999999999999999999 667899999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chhHHHHHHh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSWLSTVVLK 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~~~~~~~ 375 (429)
++|..+ |++...|+++|+++.+|++.|+.|+..++|||.+|+||.+.|..+...... +.+... .
T Consensus 141 iAG~~~------------y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~---~ 205 (246)
T COG4221 141 IAGRYP------------YPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERAD---K 205 (246)
T ss_pred cccccc------------CCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHH---H
Confidence 999876 478899999999999999999999999999999999999988766655432 111111 1
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSG 406 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG 406 (429)
........+|+|+|++++|.++.|+.-.++-
T Consensus 206 ~y~~~~~l~p~dIA~~V~~~~~~P~~vnI~e 236 (246)
T COG4221 206 VYKGGTALTPEDIAEAVLFAATQPQHVNINE 236 (246)
T ss_pred HhccCCCCCHHHHHHHHHHHHhCCCccccce
Confidence 1122346799999999999999996544443
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=332.83 Aligned_cols=266 Identities=46% Similarity=0.668 Sum_probs=237.8
Q ss_pred cCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.....+++|++++||||++|||+++|++|+++|++|++.+|+.++.+++.++++...++..+.+++||++|.++|+++++
T Consensus 27 ~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~ 106 (314)
T KOG1208|consen 27 VTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAE 106 (314)
T ss_pred eeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999987778899999999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++.++++|++|||||++.++...+.|++|.+|++|++|+|++++.++|.|+ .+.++|||+
T Consensus 107 ~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk------------------~s~~~RIV~ 168 (314)
T KOG1208|consen 107 EFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLK------------------RSAPSRIVN 168 (314)
T ss_pred HHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHh------------------hCCCCCEEE
Confidence 99999999999999999998888889999999999999999999999999998 445599999
Q ss_pred EcCcccccCCCCcccCCCCCC--CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENS--YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~--~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~ 370 (429)
+||..+ ....+..++..+.. |....+|+.||.|+..+++.|++.+.+ ||.++++|||.+.|+ +.+ . ..+.
T Consensus 169 vsS~~~-~~~~~~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-~V~~~~~hPG~v~t~~l~r-~----~~~~ 241 (314)
T KOG1208|consen 169 VSSILG-GGKIDLKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK-GVTTYSVHPGVVKTTGLSR-V----NLLL 241 (314)
T ss_pred EcCccc-cCccchhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc-CceEEEECCCcccccceec-c----hHHH
Confidence 999988 33345566665554 777778999999999999999999988 999999999999999 555 2 3355
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFS 424 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~~~ 424 (429)
..+...+.+.+.++++++|++++|++.+|+.+.++|.|+..|....++..+.++
T Consensus 242 ~~l~~~l~~~~~ks~~~ga~t~~~~a~~p~~~~~sg~y~~d~~~~~~~~~a~d~ 295 (314)
T KOG1208|consen 242 RLLAKKLSWPLTKSPEQGAATTCYAALSPELEGVSGKYFEDCAIAEPSEEALDE 295 (314)
T ss_pred HHHHHHHHHHhccCHHHHhhheehhccCccccCccccccccccccccccccCCH
Confidence 667777888888999999999999999999999999999999888886666654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=320.95 Aligned_cols=240 Identities=19% Similarity=0.166 Sum_probs=202.1
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++||+++||||+ +|||+++|++|+++|++|++++|+. +.++..+++. ...+.+++||++|+++++++++++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999 7999999999999999999999984 4444444432 1357789999999999999999999
Q ss_pred HhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++|++|+||||||+.. +..+.+.++|+..+++|+.+++++++.++|+|. + .|+
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~------------------~--~g~ 138 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLN------------------P--GAS 138 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcc------------------c--Cce
Confidence 99999999999999864 225678899999999999999999999999885 2 489
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. +...+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... .+...
T Consensus 139 Iv~iss~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~-~~~~~ 205 (252)
T PRK06079 139 IVTLTYFGSERAI------------PNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG-HKDLL 205 (252)
T ss_pred EEEEeccCccccC------------CcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC-hHHHH
Confidence 9999998876553 5578899999999999999999999999999999999999998654321 12233
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+.+....|.+++.+|+|+|++++||+++ ...+++|+.+.+|||..+
T Consensus 206 ~~~~~~~p~~r~~~pedva~~~~~l~s~-~~~~itG~~i~vdgg~~~ 251 (252)
T PRK06079 206 KESDSRTVDGVGVTIEEVGNTAAFLLSD-LSTGVTGDIIYVDKGVHL 251 (252)
T ss_pred HHHHhcCcccCCCCHHHHHHHHHHHhCc-ccccccccEEEeCCceec
Confidence 3344456678899999999999999965 478999999999999654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=322.88 Aligned_cols=244 Identities=16% Similarity=0.130 Sum_probs=200.4
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++||++|||||++ |||+++|++|+++|++|++++|+.+..+. .+++....+ ....+++|++|.++++++++++.
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESLG--SDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999996 99999999999999999999998644333 333332222 13468999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++|++|+||||||+... ..+.+.++|++++++|+.++++++++++|+|. + +|+
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~------------------~--~G~ 140 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP------------------D--GGS 140 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc------------------c--Cce
Confidence 999999999999998642 24578899999999999999999999999995 2 389
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. +.+.+|++||+|+.+|+++|+.|++++|||||+|+||+|+|++...... .....
T Consensus 141 Iv~isS~~~~~~~------------~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~-~~~~~ 207 (271)
T PRK06505 141 MLTLTYGGSTRVM------------PNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD-ARAIF 207 (271)
T ss_pred EEEEcCCCccccC------------CccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc-hHHHH
Confidence 9999998876553 5677899999999999999999999999999999999999998654321 11122
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+......|.+++.+|+|+|++++||++++ ..++||+.+.+|||....+
T Consensus 208 ~~~~~~~p~~r~~~peeva~~~~fL~s~~-~~~itG~~i~vdgG~~~~~ 255 (271)
T PRK06505 208 SYQQRNSPLRRTVTIDEVGGSALYLLSDL-SSGVTGEIHFVDSGYNIVS 255 (271)
T ss_pred HHHhhcCCccccCCHHHHHHHHHHHhCcc-ccccCceEEeecCCcccCC
Confidence 22233456678899999999999999754 7899999999999976543
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=322.67 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=199.6
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++||++|||||+ +|||+++|++|+++|++|++++|+.+ ..+..+++..+.+. . ..+++|++|.++++++++++.
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHH
Confidence 4679999999997 89999999999999999999999853 22333333333222 2 568999999999999999999
Q ss_pred HhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++|++|+||||||+.. +..+.+.++|+++|++|+.+++++++.++|+|. + .|+
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~------------------~--~g~ 138 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLN------------------D--GAS 138 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhc------------------c--CCc
Confidence 99999999999999853 225678899999999999999999999999996 3 389
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. +...+|++||+|+.+|+++|+.|++++||+||+|+||+|+|++....... ....
T Consensus 139 Iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~~ 205 (274)
T PRK08415 139 VLTLSYLGGVKYV------------PHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDF-RMIL 205 (274)
T ss_pred EEEEecCCCccCC------------CcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchh-hHHh
Confidence 9999998876543 55778999999999999999999999999999999999999876533211 1111
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
.......|.+++.+|+|+|++++||+++. ..++||+.+.+|||......
T Consensus 206 ~~~~~~~pl~r~~~pedva~~v~fL~s~~-~~~itG~~i~vdGG~~~~~~ 254 (274)
T PRK08415 206 KWNEINAPLKKNVSIEEVGNSGMYLLSDL-SSGVTGEIHYVDAGYNIMGM 254 (274)
T ss_pred hhhhhhCchhccCCHHHHHHHHHHHhhhh-hhcccccEEEEcCcccccCC
Confidence 11122456678899999999999999754 67999999999999865443
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=319.64 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++||+++||||++ |||+++|++|+++|++|++++|+. +.++..+++....+ ....+++|++|+++++++++++
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g--~~~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIG--CNFVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcC--CceEEEccCCCHHHHHHHHHHH
Confidence 457899999999997 999999999999999999999884 34444555544322 1246789999999999999999
Q ss_pred HHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 216 KKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.+++|++|+||||||... +..+.+.++|++.+++|+.+++.+++.+.|+|. + .|
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~------------------~--~G 140 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMH------------------D--GG 140 (260)
T ss_pred HHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhc------------------c--Cc
Confidence 999999999999999753 235678899999999999999999999999985 2 48
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. +...+|++||+|+.+|+++|+.|++++||+||+|+||+++|++....... +..
T Consensus 141 ~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~ 207 (260)
T PRK06603 141 SIVTLTYYGAEKVI------------PNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDF-STM 207 (260)
T ss_pred eEEEEecCccccCC------------CcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCc-HHH
Confidence 99999998876543 55778999999999999999999999999999999999999986533211 122
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+......|.+++.+|+|+|++++||+++ ...++||+.+.+|||+...+
T Consensus 208 ~~~~~~~~p~~r~~~pedva~~~~~L~s~-~~~~itG~~i~vdgG~~~~~ 256 (260)
T PRK06603 208 LKSHAATAPLKRNTTQEDVGGAAVYLFSE-LSKGVTGEIHYVDCGYNIMG 256 (260)
T ss_pred HHHHHhcCCcCCCCCHHHHHHHHHHHhCc-ccccCcceEEEeCCcccccC
Confidence 23334445677889999999999999965 47899999999999987754
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=316.85 Aligned_cols=244 Identities=24% Similarity=0.302 Sum_probs=204.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.. ++..+++... +.++.++++|++++++++++++++.+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999988643 2333334332 24688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+|++|+||||||+.... .+.+.++|++++++|+.++++++++++|.|.+ +...|+||++|
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-----------------~~~~g~ii~is 142 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVK-----------------QGNGGKIINIA 142 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHH-----------------cCCCCEEEEeC
Confidence 999999999999986533 45688999999999999999999999999973 22358999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++...... .+...+....
T Consensus 143 S~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~-~~~~~~~~~~ 209 (251)
T PRK12481 143 SMLSFQGG------------IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRA-DTARNEAILE 209 (251)
T ss_pred ChhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhccc-ChHHHHHHHh
Confidence 99887654 4567899999999999999999999999999999999999998765432 1222233445
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+|.+++.+|+|+|++++||+++. ..+++|+.+.+|||..
T Consensus 210 ~~p~~~~~~peeva~~~~~L~s~~-~~~~~G~~i~vdgg~~ 249 (251)
T PRK12481 210 RIPASRWGTPDDLAGPAIFLSSSA-SDYVTGYTLAVDGGWL 249 (251)
T ss_pred cCCCCCCcCHHHHHHHHHHHhCcc-ccCcCCceEEECCCEe
Confidence 567778899999999999999654 6899999999999964
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=317.20 Aligned_cols=248 Identities=24% Similarity=0.263 Sum_probs=211.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.....+.++.++++|++++++++++++++.+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999988888888765333457888999999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||.... ....+.++|+.++++|+.++++++++++|.|. +++.|+||++||
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~isS 145 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMV------------------ERGRGSIVNIAS 145 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hhCCeEEEEECC
Confidence 9999999999997543 24567899999999999999999999999997 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--Cchh-HHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSW-LSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~~-~~~~~ 373 (429)
..+..+. ++..+|++||+|+++|+++++.|++++|||||+|+||+++|++...... ..+. .....
T Consensus 146 ~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~ 213 (260)
T PRK07063 146 THAFKII------------PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAET 213 (260)
T ss_pred hhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHH
Confidence 8876654 5577899999999999999999999999999999999999998654311 0111 12223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+++.+|+|+|++++||+++. ..++||+.+.+|||...
T Consensus 214 ~~~~~~~r~~~~~~va~~~~fl~s~~-~~~itG~~i~vdgg~~~ 256 (260)
T PRK07063 214 LALQPMKRIGRPEEVAMTAVFLASDE-APFINATCITIDGGRSV 256 (260)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCcc-ccccCCcEEEECCCeee
Confidence 34456778999999999999999664 67999999999999764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=314.48 Aligned_cols=246 Identities=23% Similarity=0.301 Sum_probs=208.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++..+.+|++++++++++++++.+
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998888877775543 3678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||..... .+.+.++|++++++|+.+++++++.+.|.|.+ +...|+||++|
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~g~iv~~s 145 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVK-----------------QGQGGVIINTA 145 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHh-----------------cCCCcEEEEEC
Confidence 999999999999986432 45678999999999999999999999999973 22358999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..... .....+|++||+|+++|+++++.|++++||+||+|+||+++|++...... ..+.+..
T Consensus 146 S~~~~~~~~----------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~----~~~~~~~ 211 (253)
T PRK05867 146 SMSGHIINV----------PQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTE----YQPLWEP 211 (253)
T ss_pred cHHhcCCCC----------CCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchH----HHHHHHh
Confidence 987754320 02356899999999999999999999999999999999999998765421 2222334
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.+++.+|+|+|++++||+++ +..++||+.+.+|||+..
T Consensus 212 ~~~~~r~~~p~~va~~~~~L~s~-~~~~~tG~~i~vdgG~~~ 252 (253)
T PRK05867 212 KIPLGRLGRPEELAGLYLYLASE-ASSYMTGSDIVIDGGYTC 252 (253)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc-ccCCcCCCeEEECCCccC
Confidence 45667889999999999999965 478999999999999753
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=316.81 Aligned_cols=253 Identities=30% Similarity=0.364 Sum_probs=213.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+.||++|||||++|||+++|++|+++|++|++++|+.+++++...++..... ..++..+.||+++.+++++++++.
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999988888765433 357899999999999999999999
Q ss_pred HHh-CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHH-HHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 216 KKE-NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMG-HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 216 ~~~-~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
.++ +|+||+||||||.... ..+.++++|++.+++|+.| .+.+.+.+.+++. +++.|.
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~------------------~~~gg~ 144 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLK------------------KSKGGS 144 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHH------------------hcCCce
Confidence 999 7999999999998753 3778999999999999995 5666666666666 567899
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc---h
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD---S 367 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~---~ 367 (429)
|+++||.++..+.+ +...+|++||+|+.+|+|++|.||+++|||||+|+||.+.|++ ....... +
T Consensus 145 I~~~ss~~~~~~~~-----------~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~-~~~~~~~~~~~ 212 (270)
T KOG0725|consen 145 IVNISSVAGVGPGP-----------GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL-RAAGLDDGEME 212 (270)
T ss_pred EEEEeccccccCCC-----------CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc-cccccccchhh
Confidence 99999998876642 1227899999999999999999999999999999999999998 2222111 2
Q ss_pred hHHHH--HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 368 WLSTV--VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 368 ~~~~~--~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
++.+. .....|.++...|+|+|+.+.||+++..+ +++|+.+.+|||.+....
T Consensus 213 ~~~~~~~~~~~~p~gr~g~~~eva~~~~fla~~~as-yitG~~i~vdgG~~~~~~ 266 (270)
T KOG0725|consen 213 EFKEATDSKGAVPLGRVGTPEEVAEAAAFLASDDAS-YITGQTIIVDGGFTVVGP 266 (270)
T ss_pred HHhhhhccccccccCCccCHHHHHHhHHhhcCcccc-cccCCEEEEeCCEEeecc
Confidence 23222 23356789999999999999999977655 999999999999887654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=316.74 Aligned_cols=244 Identities=18% Similarity=0.146 Sum_probs=201.7
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
++++||+++||||+ +|||+++|++|+++|++|++++|+.+ +.++..+++.... ..+.++++|++|+++++++++
T Consensus 2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~ 79 (258)
T PRK07370 2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFE 79 (258)
T ss_pred cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHH
Confidence 35789999999986 89999999999999999999876543 3344455554332 246678999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 214 EVKKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++.+++|++|+||||||+.. +..+.+.++|++++++|+.+++++++.++|.|+ +
T Consensus 80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~------------------~-- 139 (258)
T PRK07370 80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMS------------------E-- 139 (258)
T ss_pred HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHh------------------h--
Confidence 99999999999999999753 235668899999999999999999999999996 3
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
.|+||++||.++..+. ++..+|++||+|+.+|+++|+.|++++||+||+|+||+++|++.+.... .+
T Consensus 140 ~g~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~-~~ 206 (258)
T PRK07370 140 GGSIVTLTYLGGVRAI------------PNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGG-IL 206 (258)
T ss_pred CCeEEEEeccccccCC------------cccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcccc-ch
Confidence 3899999998876553 5678999999999999999999999999999999999999998654321 11
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+....|.+++.+|+|+|++++||++++ ..++||+.+.+|||...
T Consensus 207 ~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~-~~~~tG~~i~vdgg~~~ 255 (258)
T PRK07370 207 DMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDL-ASGITGQTIYVDAGYCI 255 (258)
T ss_pred hhhhhhhhcCCcCcCCCHHHHHHHHHHHhChh-hccccCcEEEECCcccc
Confidence 22223334456678899999999999999654 78999999999999764
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=315.95 Aligned_cols=244 Identities=17% Similarity=0.137 Sum_probs=201.2
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++||+++|||| ++|||+++|++|+++|++|++++|+. +.++..+++....+ ....++||++|.++++++++++.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELD--SELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccC--CceEEECCCCCHHHHHHHHHHHH
Confidence 478999999997 67999999999999999999988863 34444445543322 24578999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 217 KENKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
+++|++|+||||||+.... .+.+.++|+.++++|+.+++++++.++|+|+ ++ .|
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~------------------~~-~g 140 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMR------------------GR-NS 140 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhh------------------hc-Cc
Confidence 9999999999999986431 3456788999999999999999999999986 32 48
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+.+|++.++.|++++|||||+|+||+|+|++...... .+..
T Consensus 141 ~Iv~iss~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~-~~~~ 207 (261)
T PRK08690 141 AIVALSYLGAVRAI------------PNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIAD-FGKL 207 (261)
T ss_pred EEEEEcccccccCC------------CCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCc-hHHH
Confidence 99999998876553 5678899999999999999999999999999999999999998654321 1222
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+.+....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||....
T Consensus 208 ~~~~~~~~p~~r~~~peevA~~v~~l~s~~-~~~~tG~~i~vdgG~~~~ 255 (261)
T PRK08690 208 LGHVAAHNPLRRNVTIEEVGNTAAFLLSDL-SSGITGEITYVDGGYSIN 255 (261)
T ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHhCcc-cCCcceeEEEEcCCcccc
Confidence 233344567788999999999999999754 679999999999997653
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=314.12 Aligned_cols=243 Identities=15% Similarity=0.122 Sum_probs=200.5
Q ss_pred CCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+ ..+++..+.+ ...+++||++|.+++++++++
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~-~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP-YVEPLAEELD--APIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH-HHHHHHHhhc--cceEEecCcCCHHHHHHHHHH
Confidence 567899999999999 49999999999999999999999864322 2233322222 345789999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 215 VKKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+.+++|++|++|||||+... ..+.+.++|++++++|+.+++++++.++|.|+ + .
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~------------------~--~ 141 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMT------------------N--G 141 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhc------------------c--C
Confidence 99999999999999998532 24568899999999999999999999999995 2 4
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+. +...+|++||+|+.+|+++|+.|++++||+||+|+||+++|++.+...... .
T Consensus 142 g~Ii~iss~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~-~ 208 (258)
T PRK07533 142 GSLLTMSYYGAEKVV------------ENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFD-A 208 (258)
T ss_pred CEEEEEeccccccCC------------ccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcH-H
Confidence 899999998776543 557789999999999999999999999999999999999999875432211 1
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+......|.+++.+|+|+|..++||++++ ..+++|+.+.+|||..
T Consensus 209 ~~~~~~~~~p~~r~~~p~dva~~~~~L~s~~-~~~itG~~i~vdgg~~ 255 (258)
T PRK07533 209 LLEDAAERAPLRRLVDIDDVGAVAAFLASDA-ARRLTGNTLYIDGGYH 255 (258)
T ss_pred HHHHHHhcCCcCCCCCHHHHHHHHHHHhChh-hccccCcEEeeCCccc
Confidence 2233344556678899999999999999664 6899999999999864
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=308.20 Aligned_cols=230 Identities=29% Similarity=0.371 Sum_probs=202.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|++||||||+|||+++|++|+++|++|++++|+.+++++..++++... +..+.++++|+++++++.++.+++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence 5678999999999999999999999999999999999999999999998877 457899999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++.||+||||||+.... .+.+.++.++++++|+.+...++++++|.|. +++.|.||||+|
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~------------------~~~~G~IiNI~S 143 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMV------------------ERGAGHIINIGS 143 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCceEEEEec
Confidence 99999999999987654 7789999999999999999999999999998 678899999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. +..+.|++||+++.+|+++|+.|+.+.||+|.+|+||++.|++...... .. ...
T Consensus 144 ~ag~~p~------------p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~-~~------~~~ 204 (265)
T COG0300 144 AAGLIPT------------PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGS-DV------YLL 204 (265)
T ss_pred hhhcCCC------------cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccccccc-cc------ccc
Confidence 9999886 6688999999999999999999999999999999999999999862110 00 011
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG 406 (429)
.+...+.+|+++|+.++..+...+..-+-|
T Consensus 205 ~~~~~~~~~~~va~~~~~~l~~~k~~ii~~ 234 (265)
T COG0300 205 SPGELVLSPEDVAEAALKALEKGKREIIPG 234 (265)
T ss_pred cchhhccCHHHHHHHHHHHHhcCCceEecC
Confidence 123457899999999999996654444444
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=318.36 Aligned_cols=253 Identities=14% Similarity=0.080 Sum_probs=205.8
Q ss_pred CCCCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc-------C-C---ceEEEEEeeC-
Q psy12836 137 ETSARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-------K-N---KYVLCRKCDL- 202 (429)
Q Consensus 137 ~~~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-------~-~---~~v~~~~~Dl- 202 (429)
.++|+||++||||| ++|||+++|+.|+++|++|++ +|+.+++++...++.... . + .....+.+|+
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 45699999999999 899999999999999999999 888888888776664311 1 1 1135678898
Q ss_pred -CC------------------HHHHHHHHHHHHHhCCCeeEEEEccccC----CCCCCCCHHHHHhhhcchhHHHHHHHH
Q psy12836 203 -AS------------------QESIRAFAEEVKKENKKINVLINNAGVS----GCRKMLTEEKIELQLGVNHMGHFLLTM 259 (429)
Q Consensus 203 -s~------------------~~sv~~~~~~i~~~~g~iD~lI~nAG~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~ 259 (429)
++ .++++++++++.+++|++|+||||||.. .+..+.+.++|+++|++|+.+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 33 4489999999999999999999999853 233567899999999999999999999
Q ss_pred HHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc-chhHHHHHHHHHHHHHHHHH
Q psy12836 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT-QAYNQSKLANVLFTRELAKR 338 (429)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~-~~Y~aSKaal~~l~~~la~e 338 (429)
.++|+|+ + .|+||++||.++..+. ++. .+|++||+|+++|+++|+.|
T Consensus 163 ~~~p~m~------------------~--~G~II~isS~a~~~~~------------p~~~~~Y~asKaAl~~l~~~la~E 210 (303)
T PLN02730 163 HFGPIMN------------------P--GGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFE 210 (303)
T ss_pred HHHHHHh------------------c--CCEEEEEechhhcCCC------------CCCchhhHHHHHHHHHHHHHHHHH
Confidence 9999997 3 3899999999887653 333 47999999999999999999
Q ss_pred hcC-CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 339 LEG-TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 339 l~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+++ +|||||+|+||+++|+|.+.... .+..........|..++.+|+|+|.+++||+++. ..+++|+.+.+|||...
T Consensus 211 l~~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~-a~~itG~~l~vdGG~~~ 288 (303)
T PLN02730 211 AGRKYKIRVNTISAGPLGSRAAKAIGF-IDDMIEYSYANAPLQKELTADEVGNAAAFLASPL-ASAITGATIYVDNGLNA 288 (303)
T ss_pred hCcCCCeEEEEEeeCCccCchhhcccc-cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCCEEEECCCccc
Confidence 986 89999999999999999765321 1222222223345567889999999999999654 68999999999999988
Q ss_pred ccccccc
Q psy12836 418 RVDGRFS 424 (429)
Q Consensus 418 ~~~~~~~ 424 (429)
....+|.
T Consensus 289 ~g~~~~~ 295 (303)
T PLN02730 289 MGLALDS 295 (303)
T ss_pred cccCCCc
Confidence 7766654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=313.19 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=199.1
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
.+++||+++||||+ +|||+++|++|+++|++|++++|+. +.+++..+++ .+.++..+++|++|.+++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHHHH
Confidence 46789999999997 8999999999999999999998763 3333333332 2346778899999999999999
Q ss_pred HHHHHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 213 EEVKKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
+++.+++|++|++|||||+.. +..+.+.++|+..+++|+.+++++++.++|+|. +
T Consensus 79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~- 139 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMT------------------E- 139 (257)
T ss_pred HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcc------------------c-
Confidence 999999999999999999753 124568899999999999999999999999985 3
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~ 366 (429)
.|+||++||.++..+. +...+|++||+|+++|+++|+.|++++|||||+|+||+++|++.+......
T Consensus 140 -~g~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~ 206 (257)
T PRK08594 140 -GGSIVTLTYLGGERVV------------QNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFN 206 (257)
T ss_pred -CceEEEEcccCCccCC------------CCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhcccc
Confidence 4899999999886653 556789999999999999999999999999999999999999754332111
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.....+....|.+++.+|+|+|++++||+++. ..++||+.+.+|||..
T Consensus 207 -~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~-~~~~tG~~~~~dgg~~ 254 (257)
T PRK08594 207 -SILKEIEERAPLRRTTTQEEVGDTAAFLFSDL-SRGVTGENIHVDSGYH 254 (257)
T ss_pred -HHHHHHhhcCCccccCCHHHHHHHHHHHcCcc-cccccceEEEECCchh
Confidence 11122333446678899999999999999654 6899999999999864
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=309.06 Aligned_cols=247 Identities=23% Similarity=0.250 Sum_probs=209.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++++++++++++++.+
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999998888877776543 3678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++++|+||||||.... ..+.+.+++++++++|+.+++++++.++|.|+ +.+.++||++
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~------------------~~~~~~iv~~ 141 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAML------------------ARGGGSLIFT 141 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCceEEEE
Confidence 99999999999998532 25668899999999999999999999999997 5567899999
Q ss_pred cCccccc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHKR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
||.++.. +. ++..+|++||+|+++++++++.|++++||+||+|+||+++|++.+.... .+......
T Consensus 142 sS~~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~~~~ 208 (254)
T PRK07478 142 STFVGHTAGF------------PGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD-TPEALAFV 208 (254)
T ss_pred echHhhccCC------------CCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC-CHHHHHHH
Confidence 9987752 32 5678999999999999999999999999999999999999998765432 12222222
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....+.+++.+|+|+|+.++||++++ ..+++|+.+.+|||....
T Consensus 209 ~~~~~~~~~~~~~~va~~~~~l~s~~-~~~~~G~~~~~dgg~~~~ 252 (254)
T PRK07478 209 AGLHALKRMAQPEEIAQAALFLASDA-ASFVTGTALLVDGGVSIT 252 (254)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCch-hcCCCCCeEEeCCchhcc
Confidence 22334567889999999999999665 679999999999997643
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.52 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=209.0
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...+++||+++||||++|||+++|++|+++|++|++++|+.+ .+++..+++.... .++..+++|++|++++++++++
T Consensus 2 ~~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 2 QLFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHH
Confidence 356789999999999999999999999999999999999764 4556666664432 3677889999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+.++++|+||||||..... .+.+.++|++++++|+.+++++++.++|.|. +++.|+||
T Consensus 80 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv 141 (254)
T PRK06114 80 TEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAML------------------ENGGGSIV 141 (254)
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHH------------------hcCCcEEE
Confidence 999999999999999986432 5568899999999999999999999999997 45678999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+... ....+|++||+|+++++++++.|+.++||+||+|+||+++|++...... ....+.
T Consensus 142 ~isS~~~~~~~~~----------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~--~~~~~~ 209 (254)
T PRK06114 142 NIASMSGIIVNRG----------LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEM--VHQTKL 209 (254)
T ss_pred EECchhhcCCCCC----------CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccc--hHHHHH
Confidence 9999988765411 2357899999999999999999999999999999999999998754211 112233
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+....|.+++.+|+|+|++++||+++ ...++||+.+.+|||..+
T Consensus 210 ~~~~~p~~r~~~~~dva~~~~~l~s~-~~~~~tG~~i~~dgg~~~ 253 (254)
T PRK06114 210 FEEQTPMQRMAKVDEMVGPAVFLLSD-AASFCTGVDLLVDGGFVC 253 (254)
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHcCc-cccCcCCceEEECcCEec
Confidence 44556778899999999999999965 478999999999999753
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=310.36 Aligned_cols=250 Identities=20% Similarity=0.265 Sum_probs=211.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++..+++|++|.++++++++++.
T Consensus 3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999988888887766555578899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||.... ..+.+.++|++.+++|+.+++++++.++|.|+ +.+.|+||++
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~i 144 (265)
T PRK07062 83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLR------------------ASAAASIVCV 144 (265)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------ccCCcEEEEe
Confidence 999999999999998543 25567889999999999999999999999997 4567899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC----CC---ch
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS----YY---DS 367 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~----~~---~~ 367 (429)
||.++..+. +...+|+++|+|+.+|+++++.|++++||+||+|+||+++|++..... .. ..
T Consensus 145 sS~~~~~~~------------~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~ 212 (265)
T PRK07062 145 NSLLALQPE------------PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWE 212 (265)
T ss_pred ccccccCCC------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChH
Confidence 999887654 557789999999999999999999999999999999999999864311 00 01
Q ss_pred hHHHHH--HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVV--LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~--~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+ ....|.+++.+|+|+|++++||+++ ...++||+.+.+|||...
T Consensus 213 ~~~~~~~~~~~~p~~r~~~p~~va~~~~~L~s~-~~~~~tG~~i~vdgg~~~ 263 (265)
T PRK07062 213 AWTAALARKKGIPLGRLGRPDEAARALFFLASP-LSSYTTGSHIDVSGGFAR 263 (265)
T ss_pred HHHHHHhhcCCCCcCCCCCHHHHHHHHHHHhCc-hhcccccceEEEcCceEe
Confidence 111111 1235667889999999999999965 468999999999999643
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=311.83 Aligned_cols=241 Identities=17% Similarity=0.195 Sum_probs=198.5
Q ss_pred CCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++||++|||||++ |||+++|++|+++|++|++++|+ +++++..+++....+ .+.+++||++|.++++++++++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLG--SDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccC--CceEeecCCCCHHHHHHHHHHHHh
Confidence 7899999999986 99999999999999999999998 445555556554432 356789999999999999999999
Q ss_pred hCCCeeEEEEccccCCC-------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 218 ENKKINVLINNAGVSGC-------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~-------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
++|++|++|||||+... ..+.+.++|+.++++|+.+++.+++.+.|.+. .+|+
T Consensus 81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--------------------~~g~ 140 (262)
T PRK07984 81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--------------------PGSA 140 (262)
T ss_pred hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc--------------------CCcE
Confidence 99999999999997542 12457889999999999999999999988653 2489
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. +.+.+|++||+|+++|+++++.|++++|||||+|+||+++|++....... ....
T Consensus 141 Iv~iss~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~-~~~~ 207 (262)
T PRK07984 141 LLTLSYLGAERAI------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF-RKML 207 (262)
T ss_pred EEEEecCCCCCCC------------CCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCch-HHHH
Confidence 9999998876543 55779999999999999999999999999999999999999875433211 1122
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+......|.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 208 ~~~~~~~p~~r~~~pedva~~~~~L~s~~-~~~itG~~i~vdgg~~~ 253 (262)
T PRK07984 208 AHCEAVTPIRRTVTIEDVGNSAAFLCSDL-SAGISGEVVHVDGGFSI 253 (262)
T ss_pred HHHHHcCCCcCCCCHHHHHHHHHHHcCcc-cccccCcEEEECCCccc
Confidence 22333456678899999999999999654 67999999999999654
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=310.61 Aligned_cols=242 Identities=18% Similarity=0.176 Sum_probs=195.6
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++||+++|||| ++|||+++|++|+++|++|++++|... ..+..+++....+ ....+++|++|+++++++++++.
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFG--SDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcC--CcceeeccCCCHHHHHHHHHHHH
Confidence 478999999996 689999999999999999999876422 1222233332222 23467999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 217 KENKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
+++|++|++|||||+.... .+.+.++|+..+++|+.++++++++++|+|. + .|
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~------------------~--~g 139 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS------------------D--DA 139 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC------------------C--Cc
Confidence 9999999999999986421 3467889999999999999999999999984 2 38
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. +...+|++||+|+++|+++|+.|++++|||||+|+||+++|++....... +..
T Consensus 140 ~Ii~iss~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~-~~~ 206 (260)
T PRK06997 140 SLLTLSYLGAERVV------------PNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDF-GKI 206 (260)
T ss_pred eEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccch-hhH
Confidence 99999998876543 55778999999999999999999999999999999999999876543211 122
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.+....|.++..+|+|+|++++||++++ ..++||+.+.+|||...
T Consensus 207 ~~~~~~~~p~~r~~~pedva~~~~~l~s~~-~~~itG~~i~vdgg~~~ 253 (260)
T PRK06997 207 LDFVESNAPLRRNVTIEEVGNVAAFLLSDL-ASGVTGEITHVDSGFNA 253 (260)
T ss_pred HHHHHhcCcccccCCHHHHHHHHHHHhCcc-ccCcceeEEEEcCChhh
Confidence 222334456678899999999999999764 68999999999999754
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=318.50 Aligned_cols=255 Identities=19% Similarity=0.245 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh----------hHHHHHHHHHhhhcCCceEEEEEeeCCCHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL----------DKCEKARKEVVLESKNKYVLCRKCDLASQE 206 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~----------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~ 206 (429)
+.+++||+++||||++|||+++|++|+++|++|++++|+. +++++..+++... +.++.+++||+++++
T Consensus 3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIAVQVDHLVPE 80 (305)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEEEEcCCCCHH
Confidence 4568999999999999999999999999999999999984 4555555555432 235778999999999
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcc-ccC------CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhh
Q psy12836 207 SIRAFAEEVKKENKKINVLINNA-GVS------GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIW 279 (429)
Q Consensus 207 sv~~~~~~i~~~~g~iD~lI~nA-G~~------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~ 279 (429)
+++++++++.+.+|+||+||||| |.. .+..+.+.++|++++++|+.++++++++++|+|.
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~------------- 147 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLI------------- 147 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhh-------------
Confidence 99999999999999999999999 752 2224567889999999999999999999999997
Q ss_pred hhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc
Q psy12836 280 YYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359 (429)
Q Consensus 280 ~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~ 359 (429)
+++.|+||++||..+..... .+++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|.
T Consensus 148 -----~~~~g~IV~isS~~~~~~~~---------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~ 213 (305)
T PRK08303 148 -----RRPGGLVVEITDGTAEYNAT---------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMM 213 (305)
T ss_pred -----hCCCcEEEEECCccccccCc---------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHH
Confidence 44568999999976543210 1134668999999999999999999999999999999999999985
Q ss_pred cCCC-CCchhHHHHHHhHHh-hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 360 RHSS-YYDSWLSTVVLKPLV-WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 360 ~~~~-~~~~~~~~~~~~~~~-~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.... ........ .....| ..+..+|+|+|++++||++++...++||++|..+....+.+..
T Consensus 214 ~~~~~~~~~~~~~-~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~~~~~~~~~~~~ 276 (305)
T PRK08303 214 LDAFGVTEENWRD-ALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQSLSSGQLARVYGFT 276 (305)
T ss_pred HHhhccCccchhh-hhccccccccCCCHHHHHHHHHHHHcCcchhhcCCcEEEhHHHHHhcCcc
Confidence 4211 00111111 111233 3566799999999999998775568999999977766655443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=310.11 Aligned_cols=244 Identities=24% Similarity=0.323 Sum_probs=205.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+ +++++..+++... +.++..+++|+++.++++++++++.+.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 7777777777543 236888999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+|++|+||||||.... ..+.+.+.|++++++|+.+++++++.++|+|. ++ +|+||++|
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~-~g~iv~is 140 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMM------------------EQ-GGSIINTS 140 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------Hc-CCEEEEeC
Confidence 9999999999998642 24567889999999999999999999999997 33 38999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch-hHHHHH-
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS-WLSTVV- 373 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~-~~~~~~- 373 (429)
|.++..+. +...+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+......+ .....+
T Consensus 141 S~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 208 (272)
T PRK08589 141 SFSGQAAD------------LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFR 208 (272)
T ss_pred chhhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHh
Confidence 99887654 4567899999999999999999999999999999999999998765322111 111111
Q ss_pred ---HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 ---LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ---~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 209 ~~~~~~~~~~~~~~~~~va~~~~~l~s~~-~~~~~G~~i~vdgg~~~ 254 (272)
T PRK08589 209 ENQKWMTPLGRLGKPEEVAKLVVFLASDD-SSFITGETIRIDGGVMA 254 (272)
T ss_pred hhhhccCCCCCCcCHHHHHHHHHHHcCch-hcCcCCCEEEECCCccc
Confidence 12245567889999999999999765 67999999999999653
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=311.93 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=197.8
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++||++|||||+ +|||+++|++|+++|++|++++|+.. ..+..+++..+.+ ....+++|++|+++++++++++
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHH
Confidence 34678999999997 89999999999999999999988742 2233333333322 2456899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 216 KKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.+++|++|+||||||+... ..+.+.++|++.+++|+.+++++++.++|+|. + .|
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~------------------~--~g 142 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMT------------------D--GG 142 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcC------------------C--Cc
Confidence 9999999999999998642 24578899999999999999999999999885 2 48
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. +...+|++||+|+.+|+++|+.|++++||+||+|+||+++|++....... ...
T Consensus 143 ~Iv~iss~~~~~~~------------p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~ 209 (272)
T PRK08159 143 SILTLTYYGAEKVM------------PHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDF-RYI 209 (272)
T ss_pred eEEEEeccccccCC------------CcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcc-hHH
Confidence 99999998765543 56788999999999999999999999999999999999999876433211 111
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
........|.+++.+|+|+|++++||+++. ..++||+.+.+|||+...
T Consensus 210 ~~~~~~~~p~~r~~~peevA~~~~~L~s~~-~~~itG~~i~vdgG~~~~ 257 (272)
T PRK08159 210 LKWNEYNAPLRRTVTIEEVGDSALYLLSDL-SRGVTGEVHHVDSGYHVV 257 (272)
T ss_pred HHHHHhCCcccccCCHHHHHHHHHHHhCcc-ccCccceEEEECCCceee
Confidence 111122456678899999999999999654 689999999999997654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=307.78 Aligned_cols=248 Identities=16% Similarity=0.194 Sum_probs=207.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||+++||||++|||+++|++|+++|++|++++| +.++++...+++.... +.++.++++|++|+++++++++++
T Consensus 3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999865 5666666666664432 346889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC--------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 216 KKENKKINVLINNAGVSG--------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~--------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
.+.++++|+||||||... +..+.+.+++++.+++|+.+++.+++.++|.|. +.+
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~ 143 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRME------------------KVG 143 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhh------------------ccC
Confidence 999999999999998642 123457789999999999999999999999997 455
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
.|+||++||.++..+. +...+|++||+|+++|+++|+.|++++||+||+|+||+++|++.+.... .+
T Consensus 144 ~g~iv~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~-~~ 210 (260)
T PRK08416 144 GGSIISLSSTGNLVYI------------ENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN-YE 210 (260)
T ss_pred CEEEEEEeccccccCC------------CCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC-CH
Confidence 6899999998776553 5577899999999999999999999999999999999999998765432 12
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+....|.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 211 ~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~-~~~~~G~~i~vdgg~~~ 259 (260)
T PRK08416 211 EVKAKTEELSPLNRMGQPEDLAGACLFLCSEK-ASWLTGQTIVVDGGTTF 259 (260)
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcChh-hhcccCcEEEEcCCeec
Confidence 22233344456678899999999999999654 67999999999999754
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=305.40 Aligned_cols=248 Identities=24% Similarity=0.229 Sum_probs=208.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|+++.++++++++++.+
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999988777666554 23678899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 218 ENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.++++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|. ++.|+||++||
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-------------------~~~g~ii~isS 137 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA-------------------RGGGAIVNFTS 137 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-------------------cCCcEEEEECc
Confidence 999999999999975432 4567899999999999999999999999985 13589999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH-h
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL-K 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~-~ 375 (429)
.++..+. ++...|++||+++.++++.++.|++++||+||+|+||+++|++.+..........+... .
T Consensus 138 ~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~ 205 (261)
T PRK08265 138 ISAKFAQ------------TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP 205 (261)
T ss_pred hhhccCC------------CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc
Confidence 9887764 55778999999999999999999999999999999999999987653321121112222 2
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~ 422 (429)
..+.+++.+|+|+|++++||++++ ..+++|+.+.+|||.......+
T Consensus 206 ~~p~~r~~~p~dva~~~~~l~s~~-~~~~tG~~i~vdgg~~~~~~~~ 251 (261)
T PRK08265 206 FHLLGRVGDPEEVAQVVAFLCSDA-ASFVTGADYAVDGGYSALGPEQ 251 (261)
T ss_pred cCCCCCccCHHHHHHHHHHHcCcc-ccCccCcEEEECCCeeccCCCC
Confidence 345678899999999999999654 6899999999999987655443
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=306.04 Aligned_cols=195 Identities=30% Similarity=0.408 Sum_probs=177.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+|+|||||||||.++|++|+++|++++++.|..++++...+++++..+..+++.++||++|.++++++++++.
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~ 86 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI 86 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999998998887665579999999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++||++|+||||||+.... ...+.+++...|++|++|+.+++++++|+|+ +++.|+||++
T Consensus 87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~------------------~r~~GhIVvi 148 (282)
T KOG1205|consen 87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMK------------------KRNDGHIVVI 148 (282)
T ss_pred HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhh------------------hcCCCeEEEE
Confidence 9999999999999997633 5567888999999999999999999999998 5557999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCC--eEEEEEeCCCccCCcccCC
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTG--ITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~g--IrVn~V~PG~v~T~~~~~~ 362 (429)
||++|..+. |....|++||+|+.+|.++|+.|+.+.+ |++ +|+||+|+|++....
T Consensus 149 sSiaG~~~~------------P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~ 205 (282)
T KOG1205|consen 149 SSIAGKMPL------------PFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKE 205 (282)
T ss_pred eccccccCC------------CcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchh
Confidence 999999885 5567999999999999999999999977 666 999999999976543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=305.45 Aligned_cols=240 Identities=20% Similarity=0.159 Sum_probs=195.2
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 139 ~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+++||+++|||| ++|||+++|++|+++|++|++++|+. +.+++..+++ + ..+.++++|++|++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~-~~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----P-EPAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----C-CCCcEEeCCCCCHHHHHHHHHH
Confidence 478999999999 89999999999999999999999864 3334443333 1 2466889999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 215 VKKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+.+++|++|+||||||+... ..+.+.++|++++++|+.+++++++.++|+|+ + .
T Consensus 79 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~------------------~--~ 138 (256)
T PRK07889 79 VREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMN------------------E--G 138 (256)
T ss_pred HHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcc------------------c--C
Confidence 99999999999999998632 23557889999999999999999999999996 2 3
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||... .+ .+.+.+|++||+|+.+|+++|+.|++++|||||+|+||+++|++.+.... ...
T Consensus 139 g~Iv~is~~~~-~~------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~-~~~ 204 (256)
T PRK07889 139 GSIVGLDFDAT-VA------------WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG-FEL 204 (256)
T ss_pred ceEEEEeeccc-cc------------CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC-cHH
Confidence 79999986432 22 14567899999999999999999999999999999999999998664421 112
Q ss_pred HHHHHHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.+....|.+ ++.+|+|+|+.++||++++ ..+++|+++.+|||....
T Consensus 205 ~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~-~~~~tG~~i~vdgg~~~~ 254 (256)
T PRK07889 205 LEEGWDERAPLGWDVKDPTPVARAVVALLSDW-FPATTGEIVHVDGGAHAM 254 (256)
T ss_pred HHHHHHhcCccccccCCHHHHHHHHHHHhCcc-cccccceEEEEcCceecc
Confidence 222233344555 5789999999999999664 678999999999997654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=299.72 Aligned_cols=247 Identities=23% Similarity=0.297 Sum_probs=211.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++..+.+|++|+++++++++++.
T Consensus 4 ~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 4 LFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999988888777775432 367788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||.... ..+.+.++|++++++|+.+++++++.+.+.|. +++.++||++
T Consensus 82 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~i 143 (254)
T PRK08085 82 KDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMV------------------KRQAGKIINI 143 (254)
T ss_pred HhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEE
Confidence 999999999999997543 35568899999999999999999999999987 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. ++...|++||+|+++++++++.|++++||+||+|+||+++|++.+.... .+.......
T Consensus 144 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~-~~~~~~~~~ 210 (254)
T PRK08085 144 CSMQSELGR------------DTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE-DEAFTAWLC 210 (254)
T ss_pred ccchhccCC------------CCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc-CHHHHHHHH
Confidence 998876654 5577899999999999999999999999999999999999998765332 122223344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|..++.+|+|+|++++||+++ ...++||+.+.+|||...
T Consensus 211 ~~~p~~~~~~~~~va~~~~~l~~~-~~~~i~G~~i~~dgg~~~ 252 (254)
T PRK08085 211 KRTPAARWGDPQELIGAAVFLSSK-ASDFVNGHLLFVDGGMLV 252 (254)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-cccCCcCCEEEECCCeee
Confidence 456677889999999999999975 478999999999999754
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=299.38 Aligned_cols=246 Identities=23% Similarity=0.276 Sum_probs=204.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++++.. .+..+++... +.++..+++|++|.++++++++++.
T Consensus 5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (253)
T PRK08993 5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAV 80 (253)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 55789999999999999999999999999999998877542 3334444332 2367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++++++|++|||||..... .+.+.++|++++++|+.++++++++++|.|.+ +...|+||++
T Consensus 81 ~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----------------~~~~g~iv~i 143 (253)
T PRK08993 81 AEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIA-----------------QGNGGKIINI 143 (253)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----------------CCCCeEEEEE
Confidence 9999999999999986432 55678999999999999999999999999872 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. +...+|++||+|+++++++++.|+.++||+||+|+||+++|++...... .+...+.+.
T Consensus 144 sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~-~~~~~~~~~ 210 (253)
T PRK08993 144 ASMLSFQGG------------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRA-DEQRSAEIL 210 (253)
T ss_pred CchhhccCC------------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhcc-chHHHHHHH
Confidence 999887654 4467899999999999999999999999999999999999998764321 112223344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+|.+++.+|+|+|+.++||+++. ..+++|+.+.+|||...
T Consensus 211 ~~~p~~r~~~p~eva~~~~~l~s~~-~~~~~G~~~~~dgg~~~ 252 (253)
T PRK08993 211 DRIPAGRWGLPSDLMGPVVFLASSA-SDYINGYTIAVDGGWLA 252 (253)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEECCCEec
Confidence 5566788999999999999999754 78999999999998653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=303.04 Aligned_cols=249 Identities=26% Similarity=0.309 Sum_probs=210.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++... +.++.++++|+++++++.++++++.
T Consensus 5 ~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 5 LFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred eeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999988887777776543 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-----------------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhh
Q psy12836 217 KENKKINVLINNAGVSGCR-----------------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIW 279 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-----------------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~ 279 (429)
++++++|++|||||...+. .+.+.++|++.+++|+.+++++++.++|.|.
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------- 149 (278)
T PRK08277 83 EDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMV------------- 149 (278)
T ss_pred HHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------
Confidence 9999999999999965321 3456889999999999999999999999997
Q ss_pred hhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc
Q psy12836 280 YYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359 (429)
Q Consensus 280 ~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~ 359 (429)
+.+.|+||++||.++..+. ++..+|++||+|+++++++++.|++++||+||+|+||++.|++.
T Consensus 150 -----~~~~g~ii~isS~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~ 212 (278)
T PRK08277 150 -----GRKGGNIINISSMNAFTPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQN 212 (278)
T ss_pred -----hcCCcEEEEEccchhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcch
Confidence 4557899999999887654 56778999999999999999999999999999999999999986
Q ss_pred cCCCCC----chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 360 RHSSYY----DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 360 ~~~~~~----~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+..... .....+.+....|.+++.+|+|+|++++||++++.+.++||+.+.+|||...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG~~~ 274 (278)
T PRK08277 213 RALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGGFSA 274 (278)
T ss_pred hhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCCeec
Confidence 543110 0112222334456778899999999999999763578999999999999754
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=305.27 Aligned_cols=245 Identities=24% Similarity=0.273 Sum_probs=201.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh---------hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL---------DKCEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~---------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
.++||++|||||++|||+++|++|+++|++|++++|+. +++++..+++... +.++.++++|++|+++++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAA 80 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHH
Confidence 46899999999999999999999999999999998876 6677777776543 236778899999999999
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++++.+.+|++|+||||||+.... .+.+.++|++++++|+.++++++++++|+|.+..... ...
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~------------~~~ 148 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAG------------RAV 148 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccC------------CCC
Confidence 99999999999999999999986432 5678899999999999999999999999997421100 112
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
.|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+|| +.|++.....
T Consensus 149 ~g~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~---- 211 (286)
T PRK07791 149 DARIINTSSGAGLQGS------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVF---- 211 (286)
T ss_pred CcEEEEeCchhhCcCC------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhH----
Confidence 4899999999887765 5678999999999999999999999999999999999 8898754321
Q ss_pred hHHHHHHhHHhhh--ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 368 WLSTVVLKPLVWL--FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 368 ~~~~~~~~~~~~~--~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+....+.. +..+|+|+|++++||+++. ..+++|+++.+|||....
T Consensus 212 ---~~~~~~~~~~~~~~~~pedva~~~~~L~s~~-~~~itG~~i~vdgG~~~~ 260 (286)
T PRK07791 212 ---AEMMAKPEEGEFDAMAPENVSPLVVWLGSAE-SRDVTGKVFEVEGGKISV 260 (286)
T ss_pred ---HHHHhcCcccccCCCCHHHHHHHHHHHhCch-hcCCCCcEEEEcCCceEE
Confidence 1111111212 3569999999999999654 689999999999997653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=300.13 Aligned_cols=240 Identities=22% Similarity=0.208 Sum_probs=202.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||++|||+++|++|+++|++|++++|+.+++++..+++... ..+.++++|++|.++++++++++.++++++|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999999999999999999999888888777542 2577889999999999999999999999999
Q ss_pred EEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 224 VLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 224 ~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+||||||.... ..+.+.++|.+.+++|+.+++++++.++|.|.+ +++.|+||++||.++
T Consensus 79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-----------------~~~~g~iv~isS~~~ 141 (259)
T PRK08340 79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLE-----------------KKMKGVLVYLSSVSV 141 (259)
T ss_pred EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHh-----------------cCCCCEEEEEeCccc
Confidence 99999997531 245677889999999999999999999998762 335689999999887
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCchh-HH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDSW-LS 370 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~~-~~ 370 (429)
..+. ++..+|++||+|+.+|+++|+.|++++||+||+|+||+++|++.+... ...++ ..
T Consensus 142 ~~~~------------~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 209 (259)
T PRK08340 142 KEPM------------PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWE 209 (259)
T ss_pred CCCC------------CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHH
Confidence 6543 567789999999999999999999999999999999999999864311 00111 11
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+.+....|.+++.+|+|+|++++||+++ .+.++||+.+.+|||..
T Consensus 210 ~~~~~~~p~~r~~~p~dva~~~~fL~s~-~~~~itG~~i~vdgg~~ 254 (259)
T PRK08340 210 REVLERTPLKRTGRWEELGSLIAFLLSE-NAEYMLGSTIVFDGAMT 254 (259)
T ss_pred HHHhccCCccCCCCHHHHHHHHHHHcCc-ccccccCceEeecCCcC
Confidence 2334456778899999999999999975 47899999999999965
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=306.67 Aligned_cols=258 Identities=36% Similarity=0.516 Sum_probs=211.9
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++....++..+.+++||++|.++++++++++
T Consensus 8 ~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 8 TVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred cCcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988888876655557889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+.++++|+||||||+.... ...+.++++.+|++|++|++++++.++|.|+ +. .++||++
T Consensus 88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~------------------~~-~~riv~v 148 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLR------------------AG-RARVTSQ 148 (313)
T ss_pred HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHH------------------hC-CCCeEEE
Confidence 99999999999999987543 3567899999999999999999999999996 32 5899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--cCCCeEEEEEeCCCccCCcccCCCCCc---hhH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYD---SWL 369 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el--~~~gIrVn~V~PG~v~T~~~~~~~~~~---~~~ 369 (429)
||.++..+.....++.....+++..+|+.||+|+.+|++.|++++ .+.||+||+|+||+|.|++........ ..+
T Consensus 149 sS~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 228 (313)
T PRK05854 149 SSIAARRGAINWDDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTL 228 (313)
T ss_pred echhhcCCCcCcccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHH
Confidence 999887765555555555567788899999999999999999864 467899999999999999875432100 111
Q ss_pred HHHHHhHHh--hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 370 STVVLKPLV--WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 370 ~~~~~~~~~--~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
...+...+. .....+++++|...++++.+|+.. +|.||..++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ga~~~l~~a~~~~~~--~g~~~~~~~~ 273 (313)
T PRK05854 229 MVRLIRSLSARGFLVGTVESAILPALYAATSPDAE--GGAFYGPRGP 273 (313)
T ss_pred HHHHHHHHhhcccccCCHHHHHHHhhheeeCCCCC--CCcEECCCcc
Confidence 111222111 123679999999999999988654 6999988753
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=295.94 Aligned_cols=246 Identities=24% Similarity=0.292 Sum_probs=211.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||.++|++|+++|++|++++|+.+++++..+++.... .++..+++|+++.++++++++++.+
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999988887777765432 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.++++|++|||||.... ..+.+.+++++++++|+.++++++++++|.|. +++.++||++
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~ii~~ 142 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLML------------------AQGGGAIVNT 142 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 99999999999998543 24568899999999999999999999999987 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. ++...|++||+|+++|+++++.|+.++||+||+|+||+++|++.+......+.....+.
T Consensus 143 sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~ 210 (253)
T PRK06172 143 ASVAGLGAA------------PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAA 210 (253)
T ss_pred CchhhccCC------------CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHh
Confidence 998887664 56789999999999999999999999999999999999999997764322233333344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+..+..+|+|+|+.++||+++. ..+++|++|.+|||..
T Consensus 211 ~~~~~~~~~~p~~ia~~~~~l~~~~-~~~~~G~~i~~dgg~~ 251 (253)
T PRK06172 211 AMHPVGRIGKVEEVASAVLYLCSDG-ASFTTGHALMVDGGAT 251 (253)
T ss_pred ccCCCCCccCHHHHHHHHHHHhCcc-ccCcCCcEEEECCCcc
Confidence 4556677889999999999999765 6789999999999964
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=299.39 Aligned_cols=244 Identities=22% Similarity=0.241 Sum_probs=202.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|+++.++++++++++.+.
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999988877665543 235778899999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHH----HHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEK----IELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~----~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++++|+||||||+... ..+.+.++ |++++++|+.+++.+++.++|.|. + ..|+|
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~-~~g~i 138 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALK------------------A-SGGSM 138 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHH------------------h-cCCEE
Confidence 9999999999997532 22344443 889999999999999999999986 2 34899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY------- 364 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~------- 364 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|+++. |+||+|+||+++|++......
T Consensus 139 v~~sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~el~~~-Irvn~i~PG~i~t~~~~~~~~~~~~~~~ 205 (263)
T PRK06200 139 IFTLSNSSFYPG------------GGGPLYTASKHAVVGLVRQLAYELAPK-IRVNGVAPGGTVTDLRGPASLGQGETSI 205 (263)
T ss_pred EEECChhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHhcC-cEEEEEeCCccccCCcCccccCCCCccc
Confidence 999999887654 456789999999999999999999885 999999999999998643210
Q ss_pred -CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 365 -YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
..+...+.+....|.+++.+|+|+|++++||++++++.++||+.+.+|||+...+
T Consensus 206 ~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~~~~~ 261 (263)
T PRK06200 206 SDSPGLADMIAAITPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGLGIRG 261 (263)
T ss_pred ccccchhHHhhcCCCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCceeecc
Confidence 0111223344456778899999999999999976547899999999999976644
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=294.36 Aligned_cols=246 Identities=26% Similarity=0.349 Sum_probs=210.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++++|+++||||++|||++++++|+++|++|++++|+.++++...+++.... ..+..+++|+++.++++++++++.
T Consensus 3 ~~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 3 LFDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999988888777775432 357788999999999999999999
Q ss_pred HhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+.++++|++|||||... +....+.++++..+++|+.+++++++.++|+|+ +.+.++||+
T Consensus 81 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~ 142 (252)
T PRK07035 81 ERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMK------------------EQGGGSIVN 142 (252)
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCcEEEE
Confidence 99999999999999643 235568899999999999999999999999997 456689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+. ++..+|++||+++++++++++.|+.++||+||+|+||+++|++.+..... +...+..
T Consensus 143 ~sS~~~~~~~------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~-~~~~~~~ 209 (252)
T PRK07035 143 VASVNGVSPG------------DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN-DAILKQA 209 (252)
T ss_pred ECchhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC-HHHHHHH
Confidence 9998876654 56788999999999999999999999999999999999999987654321 2222333
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+..+..+|+|+|++++|++++. ..+++|+++.+|||..
T Consensus 210 ~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~dgg~~ 251 (252)
T PRK07035 210 LAHIPLRRHAEPSEMAGAVLYLASDA-SSYTTGECLNVDGGYL 251 (252)
T ss_pred HccCCCCCcCCHHHHHHHHHHHhCcc-ccCccCCEEEeCCCcC
Confidence 44456677899999999999999765 6789999999999854
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=296.38 Aligned_cols=245 Identities=25% Similarity=0.313 Sum_probs=206.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+ ++.++..+.+... +.++.++++|+++.++++++++++.+
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998 5555555555332 23678899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+|++|++|||||..... .+.+.++|++.+++|+.+++.+++.++|.|. +++.|+||++|
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~is 149 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMA------------------KQGSGKIINIA 149 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHH------------------hcCCeEEEEEC
Confidence 999999999999976432 4567889999999999999999999999998 45568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. +...+|++||+|++++++++++|+.++||+||+|+||+++|++.+..... +........
T Consensus 150 S~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~ 216 (258)
T PRK06935 150 SMLSFQGG------------KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD-KNRNDEILK 216 (258)
T ss_pred CHHhccCC------------CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC-hHHHHHHHh
Confidence 99887654 45679999999999999999999999999999999999999986543221 222233444
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.++.+++.+|+|+|.+++||+++ ...+++|+.+.+|||...
T Consensus 217 ~~~~~~~~~~~dva~~~~~l~s~-~~~~~~G~~i~~dgg~~~ 257 (258)
T PRK06935 217 RIPAGRWGEPDDLMGAAVFLASR-ASDYVNGHILAVDGGWLV 257 (258)
T ss_pred cCCCCCCCCHHHHHHHHHHHcCh-hhcCCCCCEEEECCCeec
Confidence 56678899999999999999975 468999999999999643
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=295.03 Aligned_cols=240 Identities=28% Similarity=0.350 Sum_probs=197.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++||+++||||++|||+++|++|+++|++|++++ |+.++.++...++.... ..+..+++|+++.++++.+++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcC--CceEEEecccCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999875 66677776666665432 35678899999999999999888753
Q ss_pred ----CC--CeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 219 ----NK--KINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 219 ----~g--~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
++ ++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|. + .|+
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~------------------~--~g~ 139 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLR------------------D--NSR 139 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhh------------------c--CCe
Confidence 34 89999999997533 25567889999999999999999999999986 3 389
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++++++++.|++++||+||+|+||+|.|++.+.... .+..
T Consensus 140 iv~isS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~- 205 (252)
T PRK12747 140 IINISSAATRISL------------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMM- 205 (252)
T ss_pred EEEECCcccccCC------------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHH-
Confidence 9999999887654 5577899999999999999999999999999999999999998764321 1111
Q ss_pred HHHHh-HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 371 TVVLK-PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 371 ~~~~~-~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+.. ..+.+++.+|+|+|++++||+++ ...+++|+.+.+|||..
T Consensus 206 ~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~~G~~i~vdgg~~ 251 (252)
T PRK12747 206 KQYATTISAFNRLGEVEDIADTAAFLASP-DSRWVTGQLIDVSGGSC 251 (252)
T ss_pred HHHHHhcCcccCCCCHHHHHHHHHHHcCc-cccCcCCcEEEecCCcc
Confidence 11222 12456788999999999999964 46899999999999864
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=300.68 Aligned_cols=231 Identities=32% Similarity=0.435 Sum_probs=201.9
Q ss_pred cCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC-CCeeEE
Q psy12836 149 GAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN-KKINVL 225 (429)
Q Consensus 149 Gas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~-g~iD~l 225 (429)
|++ +|||+++|++|+++|++|++++|+.+++++..+++..+.+. . ++++|++++++++++++++.+.+ |+||+|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGA-E--VIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTS-E--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCC-c--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 667 99999999999999999999999999987778887776653 3 48999999999999999999999 999999
Q ss_pred EEccccCCC----C--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 226 INNAGVSGC----R--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 226 I~nAG~~~~----~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
|||+|.... . .+.+.++|++.+++|+.+++.+++++.|+|. +.|+||++||.++
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~gsii~iss~~~ 137 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMK--------------------KGGSIINISSIAA 137 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHH--------------------HEEEEEEEEEGGG
T ss_pred EecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hCCCcccccchhh
Confidence 999998654 1 4567899999999999999999999999887 2389999999987
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC-CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
..+. ++...|+++|+|+++|+++||.||++ +|||||+|+||++.|++.+.... .+...+......|
T Consensus 138 ~~~~------------~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~-~~~~~~~~~~~~p 204 (241)
T PF13561_consen 138 QRPM------------PGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPG-NEEFLEELKKRIP 204 (241)
T ss_dssp TSBS------------TTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHT-HHHHHHHHHHHST
T ss_pred cccC------------ccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhcccc-ccchhhhhhhhhc
Confidence 6664 56779999999999999999999999 99999999999999998654432 2334455667788
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.++..+|+|+|++++||+++ .+.++||+.|.+|||++
T Consensus 205 l~r~~~~~evA~~v~fL~s~-~a~~itG~~i~vDGG~s 241 (241)
T PF13561_consen 205 LGRLGTPEEVANAVLFLASD-AASYITGQVIPVDGGFS 241 (241)
T ss_dssp TSSHBEHHHHHHHHHHHHSG-GGTTGTSEEEEESTTGG
T ss_pred cCCCcCHHHHHHHHHHHhCc-cccCccCCeEEECCCcC
Confidence 89989999999999999965 57899999999999974
|
... |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=300.76 Aligned_cols=245 Identities=21% Similarity=0.230 Sum_probs=202.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+. +..++..+.+... +.++.++.+|+++.+++++++++
T Consensus 44 ~~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999999988753 3444444444322 23677889999999999999999
Q ss_pred HHHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.+|++|++|||||... +..+.+.++|++++++|+.++++++++++|+|. + .|+|
T Consensus 122 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~--~g~i 181 (294)
T PRK07985 122 AHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLP------------------K--GASI 181 (294)
T ss_pred HHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhh------------------c--CCEE
Confidence 9999999999999999743 235678899999999999999999999999986 2 3799
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|++++++.++.|++++||+||+|+||+|.|++...... .+....
T Consensus 182 v~iSS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~-~~~~~~ 248 (294)
T PRK07985 182 ITTSSIQAYQPS------------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-TQDKIP 248 (294)
T ss_pred EEECCchhccCC------------CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC-CHHHHH
Confidence 999999887654 4577899999999999999999999999999999999999998543211 122223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+.++..+|+|+|++++||++++ ..+++|+.+.+|||..+
T Consensus 249 ~~~~~~~~~r~~~pedva~~~~fL~s~~-~~~itG~~i~vdgG~~~ 293 (294)
T PRK07985 249 QFGQQTPMKRAGQPAELAPVYVYLASQE-SSYVTAEVHGVCGGEHL 293 (294)
T ss_pred HHhccCCCCCCCCHHHHHHHHHhhhChh-cCCccccEEeeCCCeeC
Confidence 3444556678899999999999999654 78999999999999653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=293.13 Aligned_cols=245 Identities=24% Similarity=0.315 Sum_probs=207.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
||+++||||++|||+++|+.|+++|++|++++|+.+.+++...++.... .++.++++|++++++++++++++.+++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999999999988887777765432 36788999999999999999999999999
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||.... ..+.+.++++.++++|+.+++.+++.+++.|++ ....++||++||..+
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~~~iv~~sS~~~ 142 (256)
T PRK08643 80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKK-----------------LGHGGKIINATSQAG 142 (256)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCCEEEEECcccc
Confidence 9999999997543 255678999999999999999999999999873 223589999999888
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCchhHHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDSWLST 371 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~~~~~ 371 (429)
..+. ++..+|++||++++.+++.++.|+.++||+||+|+||++.|++..... ....+...
T Consensus 143 ~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
T PRK08643 143 VVGN------------PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGME 210 (256)
T ss_pred ccCC------------CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHH
Confidence 7664 457789999999999999999999999999999999999999875421 11112223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+...++.+++.+|+|+|++++||+++. ..+++|+.+.+|||..++
T Consensus 211 ~~~~~~~~~~~~~~~~va~~~~~L~~~~-~~~~~G~~i~vdgg~~~~ 256 (256)
T PRK08643 211 QFAKDITLGRLSEPEDVANCVSFLAGPD-SDYITGQTIIVDGGMVFH 256 (256)
T ss_pred HHhccCCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEeCCCeecC
Confidence 3444566778899999999999999654 789999999999997653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=293.03 Aligned_cols=246 Identities=24% Similarity=0.284 Sum_probs=208.3
Q ss_pred CCCCCCCEEEEEcCCC-cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANT-GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGass-GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...++||+++||||+| |||+++|+.|+++|++|++++|+.+++++..++++...+..++..+++|++++++++++++++
T Consensus 12 ~~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 12 HGLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred ccccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 3456799999999985 999999999999999999999999888887777765444346888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV 292 (429)
.+.+|++|+||||||..... .+.+.++|++.+++|+.+++.+++.++|.|. ... .|+||
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~g~iv 153 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMR------------------ARGHGGVIV 153 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCcEEE
Confidence 99999999999999975432 5567899999999999999999999999997 333 68999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||..+..+. ++...|++||+|+++++++++.|++++||+||+|+||++.|++.+... .+...+.
T Consensus 154 ~~ss~~~~~~~------------~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~--~~~~~~~ 219 (262)
T PRK07831 154 NNASVLGWRAQ------------HGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT--SAELLDE 219 (262)
T ss_pred EeCchhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc--CHHHHHH
Confidence 99998876553 567789999999999999999999999999999999999999875432 1223333
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
+....+.++..+|+|+|+.++||+++. ..++||+++.+|++.
T Consensus 220 ~~~~~~~~r~~~p~~va~~~~~l~s~~-~~~itG~~i~v~~~~ 261 (262)
T PRK07831 220 LAAREAFGRAAEPWEVANVIAFLASDY-SSYLTGEVVSVSSQH 261 (262)
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHcCch-hcCcCCceEEeCCCC
Confidence 444455678899999999999999754 689999999999864
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=296.09 Aligned_cols=236 Identities=25% Similarity=0.275 Sum_probs=198.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+.. .++.+++||++|+++++++++++.+
T Consensus 2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999986431 1477889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++++|+||||||.... ..+.+.++|++++++|+.|++++++.++|+|. +++.|+||++|
T Consensus 69 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~is 130 (258)
T PRK06398 69 KYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYML------------------KQDKGVIINIA 130 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCeEEEEeC
Confidence 99999999999998543 35678899999999999999999999999997 44578999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----Cchh-HH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDSW-LS 370 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~~~-~~ 370 (429)
|.++..+. ++..+|++||+|+++++++++.|+.+. |+||+|+||+++|++...... ..+. ..
T Consensus 131 S~~~~~~~------------~~~~~Y~~sKaal~~~~~~la~e~~~~-i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~ 197 (258)
T PRK06398 131 SVQSFAVT------------RNAAAYVTSKHAVLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLEWAAELEVGKDPEHVE 197 (258)
T ss_pred cchhccCC------------CCCchhhhhHHHHHHHHHHHHHHhCCC-CEEEEEecCCccchHHhhhhhccccCChhhhH
Confidence 98887653 567899999999999999999999876 999999999999998654211 0111 11
Q ss_pred ---HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 ---TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ---~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+.+....+.+++.+|+|+|++++||++++ ..+++|+.+.+|||....
T Consensus 198 ~~~~~~~~~~~~~~~~~p~eva~~~~~l~s~~-~~~~~G~~i~~dgg~~~~ 247 (258)
T PRK06398 198 RKIREWGEMHPMKRVGKPEEVAYVVAFLASDL-ASFITGECVTVDGGLRAL 247 (258)
T ss_pred HHHHhhhhcCCcCCCcCHHHHHHHHHHHcCcc-cCCCCCcEEEECCccccC
Confidence 11222345567889999999999999654 678999999999997654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=290.80 Aligned_cols=243 Identities=26% Similarity=0.328 Sum_probs=201.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|++|+++|++|++++|+.. .+..+.+... +.++..+++|+++.+++.++++++.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999752 3333444332 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... .+.+.+++++++++|+.+++++++.+++.|.+ +...|+||++||
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~g~iv~~sS 140 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLK-----------------QGRGGKIINIAS 140 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----------------cCCCeEEEEEec
Confidence 99999999999986533 45678899999999999999999999999872 222689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. +....|++||+|+++++++++.|+.++||+||+|+||++.|++.+..... ......+...
T Consensus 141 ~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~~~ 207 (248)
T TIGR01832 141 MLSFQGG------------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD-EDRNAAILER 207 (248)
T ss_pred HHhccCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC-hHHHHHHHhc
Confidence 8876553 44678999999999999999999999999999999999999987643221 1222233445
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.+++.+|+|+|++++||+++. ..+++|+++.+|||..
T Consensus 208 ~~~~~~~~~~dva~~~~~l~s~~-~~~~~G~~i~~dgg~~ 246 (248)
T TIGR01832 208 IPAGRWGTPDDIGGPAVFLASSA-SDYVNGYTLAVDGGWL 246 (248)
T ss_pred CCCCCCcCHHHHHHHHHHHcCcc-ccCcCCcEEEeCCCEe
Confidence 56678899999999999999754 6789999999999964
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=300.06 Aligned_cols=245 Identities=23% Similarity=0.259 Sum_probs=203.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...++||++|||||++|||+++|++|+++|++|++++++.+ ..++..+.+... +.++.+++||+++.+++++++++
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHH
Confidence 44588999999999999999999999999999999887643 344444444433 23678899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.++++|+||||||.... ..+.+.++|++++++|+.|++++++.++|.|. ..++|
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--------------------~~~~i 187 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLP--------------------PGASI 187 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------cCCEE
Confidence 99999999999999997532 35678899999999999999999999999885 24799
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++...|++||+|+++|+++|+.|+.++||+||+|+||+++|++...... .+....
T Consensus 188 v~~sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~-~~~~~~ 254 (300)
T PRK06128 188 INTGSIQSYQPS------------PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQ-PPEKIP 254 (300)
T ss_pred EEECCccccCCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCC-CHHHHH
Confidence 999999887654 4577899999999999999999999999999999999999998654221 122223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+.++...|+|+|.+++||+++. ..+++|+.|.+|||..+
T Consensus 255 ~~~~~~p~~r~~~p~dva~~~~~l~s~~-~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 255 DFGSETPMKRPGQPVEMAPLYVLLASQE-SSYVTGEVFGVTGGLLL 299 (300)
T ss_pred HHhcCCCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEeeCCCEeC
Confidence 3334456678899999999999999764 67899999999999754
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=296.51 Aligned_cols=243 Identities=21% Similarity=0.225 Sum_probs=198.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+. . +.++..+++|+++.++++++++++.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----H-GDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----c-CCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998776654332 1 235788899999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCC----HHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 219 NKKINVLINNAGVSGC---RKMLT----EEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~----~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++++|+||||||+... ..+.+ .++|++++++|+.++++++++++|.|. +. +|+|
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~-~g~i 137 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALV------------------AS-RGSV 137 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHh------------------hc-CCCE
Confidence 9999999999997532 12222 257999999999999999999999996 33 3789
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--Cch--
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDS-- 367 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~-- 367 (429)
|+++|..+..+. ++..+|++||+|+++|+++++.|++++ |+||+|+||++.|+|...... ...
T Consensus 138 v~~sS~~~~~~~------------~~~~~Y~~sKaa~~~l~~~la~e~~~~-irvn~i~PG~i~t~~~~~~~~~~~~~~~ 204 (262)
T TIGR03325 138 IFTISNAGFYPN------------GGGPLYTAAKHAVVGLVKELAFELAPY-VRVNGVAPGGMSSDLRGPKSLGMADKSI 204 (262)
T ss_pred EEEeccceecCC------------CCCchhHHHHHHHHHHHHHHHHhhccC-eEEEEEecCCCcCCCccccccccccccc
Confidence 999998877653 456789999999999999999999987 999999999999998643210 000
Q ss_pred ---hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 368 ---WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 368 ---~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...+......|.+++.+|+|+|++++||++++...+++|+.|.+|||....
T Consensus 205 ~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg~~~~ 258 (262)
T TIGR03325 205 STVPLGDMLKSVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGMGVR 258 (262)
T ss_pred cccchhhhhhhcCCCCCCCChHHhhhheeeeecCCCcccccceEEEecCCeeec
Confidence 111222334567889999999999999998765678999999999997654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=290.63 Aligned_cols=244 Identities=24% Similarity=0.338 Sum_probs=208.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+++||||++|||+++|++|+++|++|++++|+.+..+...+++... +.++.++.+|+++.++++++++.+.
T Consensus 6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~ 83 (255)
T PRK06113 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAL 83 (255)
T ss_pred ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999998888777776543 2367788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+.++++|++|||||...+. .+.+.+++++.+++|+.+++++++++.|.|. +.+.++||++|
T Consensus 84 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~is 145 (255)
T PRK06113 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEME------------------KNGGGVILTIT 145 (255)
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hcCCcEEEEEe
Confidence 9999999999999976432 3567899999999999999999999999987 44568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+++|+++++.++.+.||+||+|+||+++|++.+... .+........
T Consensus 146 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~ 211 (255)
T PRK06113 146 SMAAENKN------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQ 211 (255)
T ss_pred cccccCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccccc--CHHHHHHHHh
Confidence 98877654 557789999999999999999999999999999999999999876532 1223333344
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+..++.+|+|+|++++|+++ +...+++|+.|.+|||.
T Consensus 212 ~~~~~~~~~~~d~a~~~~~l~~-~~~~~~~G~~i~~~gg~ 250 (255)
T PRK06113 212 HTPIRRLGQPQDIANAALFLCS-PAASWVSGQILTVSGGG 250 (255)
T ss_pred cCCCCCCcCHHHHHHHHHHHcC-ccccCccCCEEEECCCc
Confidence 4556678899999999999995 44789999999999984
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=291.29 Aligned_cols=247 Identities=23% Similarity=0.241 Sum_probs=210.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.++.++..+++... +.++..+++|++|.++++++++++.
T Consensus 5 ~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 5 LFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred ccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHH
Confidence 44688999999999999999999999999999999999998887777766543 2468889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||..... .+.+.+++++++++|+.+++++++.+.+.|. +++.|+||++
T Consensus 83 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~i 144 (255)
T PRK07523 83 AEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMI------------------ARGAGKIINI 144 (255)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HhCCeEEEEE
Confidence 9999999999999986432 5568899999999999999999999999997 4467899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. ++...|+++|++++++++.++.|++++||+||+|+||+++|++.+.... .+...+.+.
T Consensus 145 ss~~~~~~~------------~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~ 211 (255)
T PRK07523 145 ASVQSALAR------------PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA-DPEFSAWLE 211 (255)
T ss_pred ccchhccCC------------CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc-CHHHHHHHH
Confidence 998776543 5678899999999999999999999999999999999999998654321 122333344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++..|+|+|.+++||+++ +..+++|+.+.+|||...
T Consensus 212 ~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~i~~~gg~~~ 253 (255)
T PRK07523 212 KRTPAGRWGKVEELVGACVFLASD-ASSFVNGHVLYVDGGITA 253 (255)
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCc-hhcCccCcEEEECCCeec
Confidence 455667889999999999999965 467899999999999754
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=287.97 Aligned_cols=219 Identities=32% Similarity=0.414 Sum_probs=195.5
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+..+.+|++||||||++|||+++|.+||++|+++++.+.|.+..++..++++..+ ++....||+++.+++.+.++++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999987662 7899999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++.|.+|+||||||+.... .+.+.++++++|++|+.|+|+.+++++|.|. +...|+||.
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~------------------~~~~GHIV~ 170 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKML------------------ENNNGHIVT 170 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHH------------------hcCCceEEE
Confidence 99999999999999997544 6689999999999999999999999999998 667899999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc---CCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE---GTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~---~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
++|.+|..+. ++..+|++||+|+.+|.++|..|+. ..||+...|+|++++|+|... ....+.+
T Consensus 171 IaS~aG~~g~------------~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~-~~~~~~l- 236 (300)
T KOG1201|consen 171 IASVAGLFGP------------AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG-ATPFPTL- 236 (300)
T ss_pred ehhhhcccCC------------ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC-CCCCccc-
Confidence 9999999987 6788999999999999999999986 467999999999999999886 2111111
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcC
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~ 398 (429)
.-..+|+++|+.++.....
T Consensus 237 ---------~P~L~p~~va~~Iv~ai~~ 255 (300)
T KOG1201|consen 237 ---------APLLEPEYVAKRIVEAILT 255 (300)
T ss_pred ---------cCCCCHHHHHHHHHHHHHc
Confidence 1245899999999987744
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=290.30 Aligned_cols=238 Identities=25% Similarity=0.320 Sum_probs=198.9
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcC-----------hhHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRD-----------LDKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~-----------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
+++||+++||||+ +|||+++|++|+++|++|++++|+ .++..+..+++... +.++.++++|+++.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~ 80 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN--GVKVSSMELDLTQN 80 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence 6889999999999 599999999999999999998643 22333344444432 34788899999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
++++++++++.+.+|++|++|||||.... ..+.+.+++++++++|+.+++++++.++|.|.
T Consensus 81 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----------------- 143 (256)
T PRK12859 81 DAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFD----------------- 143 (256)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh-----------------
Confidence 99999999999999999999999997543 36678999999999999999999999999997
Q ss_pred ccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC
Q psy12836 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363 (429)
Q Consensus 284 ~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~ 363 (429)
++..|+||++||.++..+. ++..+|++||+|+.+|+++++.|++++||+||+|+||+++|++...
T Consensus 144 -~~~~g~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-- 208 (256)
T PRK12859 144 -KKSGGRIINMTSGQFQGPM------------VGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-- 208 (256)
T ss_pred -hcCCeEEEEEcccccCCCC------------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH--
Confidence 4557899999998876553 5678999999999999999999999999999999999999996432
Q ss_pred CCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.....+....+..+..+|+|+|+.++|++++. ..+++|+++.+|||.
T Consensus 209 ----~~~~~~~~~~~~~~~~~~~d~a~~~~~l~s~~-~~~~~G~~i~~dgg~ 255 (256)
T PRK12859 209 ----EIKQGLLPMFPFGRIGEPKDAARLIKFLASEE-AEWITGQIIHSEGGF 255 (256)
T ss_pred ----HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEeCCCc
Confidence 12222333445567789999999999999664 679999999999984
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=289.88 Aligned_cols=248 Identities=26% Similarity=0.310 Sum_probs=212.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++++.|+++|++|++++|+.+.+++..+++....++.++..+++|+++.++++++++++.
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 44688999999999999999999999999999999999999888888877665445678899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||.... ..+.+.+++++.+++|+.++++++++++|+|. +++.++||++
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~ii~~ 145 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLK------------------QHASSAIVNI 145 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCceEEEE
Confidence 999999999999998532 25568899999999999999999999999997 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++...|++||++++.++++++.|+.++||+||+|+||+++|++...... .+.......
T Consensus 146 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~ 212 (257)
T PRK09242 146 GSVSGLTHV------------RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS-DPDYYEQVI 212 (257)
T ss_pred CccccCCCC------------CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC-ChHHHHHHH
Confidence 998887654 5677899999999999999999999999999999999999998765432 222333333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+..+..+|+|+|.+++|++++ ...+++|+.+..||+..
T Consensus 213 ~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~i~~~gg~~ 253 (257)
T PRK09242 213 ERTPMRRVGEPEEVAAAVAFLCMP-AASYITGQCIAVDGGFL 253 (257)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-ccccccCCEEEECCCeE
Confidence 445566788999999999999965 46788999999999854
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=290.77 Aligned_cols=245 Identities=24% Similarity=0.253 Sum_probs=204.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++.... +.++..+.+|+++++++++++++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~--- 78 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAE--- 78 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHH---
Confidence 45789999999999999999999999999999999999988888777775443 24678889999999999888764
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|++|||||.... ..+.+.++|+.++++|+.++++++++++|.|. +++.|+||++|
T Consensus 79 -~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~is 139 (259)
T PRK06125 79 -AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMK------------------ARGSGVIVNVI 139 (259)
T ss_pred -hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEEEec
Confidence 4799999999998643 35678999999999999999999999999997 44568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-------CCchh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-------YYDSW 368 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-------~~~~~ 368 (429)
|..+..+. +++.+|+++|+|+++++++++.|+.++||+||+|+||+++|++..... ...+.
T Consensus 140 s~~~~~~~------------~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~ 207 (259)
T PRK06125 140 GAAGENPD------------ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDES 207 (259)
T ss_pred CccccCCC------------CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHH
Confidence 98776543 456789999999999999999999999999999999999999754211 01122
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....+....+.+++.+|+|+|++++||+++ ...+++|+.+.+|||....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~-~~~~~~G~~i~vdgg~~~~ 256 (259)
T PRK06125 208 RWQELLAGLPLGRPATPEEVADLVAFLASP-RSGYTSGTVVTVDGGISAR 256 (259)
T ss_pred HHHHHhccCCcCCCcCHHHHHHHHHHHcCc-hhccccCceEEecCCeeec
Confidence 223334455667888999999999999954 4789999999999997654
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=290.52 Aligned_cols=242 Identities=28% Similarity=0.363 Sum_probs=197.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||++|||+++|++|+++|++|++++++.+... +++... .+.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~---~~l~~~----~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA---KELREK----GVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHhC----CCeEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999877654322 222221 367889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||.... ....+.++|++++++|+.+++++++.++|.|+ +++.|+||++|
T Consensus 76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~------------------~~~~g~iv~is 137 (255)
T PRK06463 76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLK------------------LSKNGAIVNIA 137 (255)
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 99999999999998642 24568899999999999999999999999997 45678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc--hhHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD--SWLSTVV 373 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~--~~~~~~~ 373 (429)
|.++..+. .++..+|++||+|+++|+++++.|+++.||+||+|+||+++|++........ +.....+
T Consensus 138 S~~~~~~~-----------~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~ 206 (255)
T PRK06463 138 SNAGIGTA-----------AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELF 206 (255)
T ss_pred CHHhCCCC-----------CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHH
Confidence 98775422 1456789999999999999999999999999999999999999875422111 1122223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+.+++.+|+|+|+.++||++++ ..+++|+.+.+|||..
T Consensus 207 ~~~~~~~~~~~~~~va~~~~~l~s~~-~~~~~G~~~~~dgg~~ 248 (255)
T PRK06463 207 RNKTVLKTTGKPEDIANIVLFLASDD-ARYITGQVIVADGGRI 248 (255)
T ss_pred HhCCCcCCCcCHHHHHHHHHHHcChh-hcCCCCCEEEECCCee
Confidence 33445567889999999999999655 6789999999999854
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=290.56 Aligned_cols=249 Identities=21% Similarity=0.283 Sum_probs=210.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++..+++|+++.++++++++++.
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999998888777766543 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||..... .+.+.+++++++++|+.+++.+++.++|+|. +.+.|+||++
T Consensus 83 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~i 144 (265)
T PRK07097 83 KEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMI------------------KKGHGKIINI 144 (265)
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 9999999999999986533 5568899999999999999999999999997 4567899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-----CchhH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-----YDSWL 369 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-----~~~~~ 369 (429)
||..+..+. ++...|++||+|+++++++++.|+.++||+||+|+||.+.|++...... .....
T Consensus 145 sS~~~~~~~------------~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 212 (265)
T PRK07097 145 CSMMSELGR------------ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPF 212 (265)
T ss_pred cCccccCCC------------CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhH
Confidence 998876654 5578899999999999999999999999999999999999998654321 01111
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...+....+..++.+|+|+|+.++++++++ ..+++|+.+.++||....
T Consensus 213 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~gg~~~~ 260 (265)
T PRK07097 213 DQFIIAKTPAARWGDPEDLAGPAVFLASDA-SNFVNGHILYVDGGILAY 260 (265)
T ss_pred HHHHHhcCCccCCcCHHHHHHHHHHHhCcc-cCCCCCCEEEECCCceec
Confidence 122233344567889999999999999764 678999999999996543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=288.14 Aligned_cols=245 Identities=21% Similarity=0.225 Sum_probs=203.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++.... .++.++++|++++++++++++++.+.+++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999999888877776665432 36888999999999999999999999999
Q ss_pred eeEEEEccccCC--CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSG--CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||... +..+.+.++|++++++|+.+++++++++++.|.+ ....|+||++||..+
T Consensus 79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~g~ii~isS~~~ 141 (252)
T PRK07677 79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIE-----------------KGIKGNIINMVATYA 141 (252)
T ss_pred ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHh-----------------cCCCEEEEEEcChhh
Confidence 999999999643 2356788999999999999999999999999862 234589999999987
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC-CCeEEEEEeCCCccCCc-ccCCCCCchhHHHHHHhHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTDI-LRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~-~gIrVn~V~PG~v~T~~-~~~~~~~~~~~~~~~~~~~ 377 (429)
..+. +...+|++||+|+++|+++|+.|+.+ +||+||+|+||+++|+. ...... .+...+.+.+..
T Consensus 142 ~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~-~~~~~~~~~~~~ 208 (252)
T PRK07677 142 WDAG------------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWE-SEEAAKRTIQSV 208 (252)
T ss_pred ccCC------------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccC-CHHHHHHHhccC
Confidence 6543 45678999999999999999999975 79999999999999643 222211 122333344455
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+.+++.+|+|+|+++.||++++ ..+++|+.+.+|||....+
T Consensus 209 ~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~gg~~~~~ 249 (252)
T PRK07677 209 PLGRLGTPEEIAGLAYFLLSDE-AAYINGTCITMDGGQWLNQ 249 (252)
T ss_pred CCCCCCCHHHHHHHHHHHcCcc-ccccCCCEEEECCCeecCC
Confidence 6678899999999999999654 6789999999999976643
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=288.73 Aligned_cols=252 Identities=24% Similarity=0.290 Sum_probs=209.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++|+++||||++|||+++|++|+++|++|++++|+. +..+...+++... +.++.++.+|++|.++++++++++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998854 4555566666443 2467889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||..... .+.+.+++++++++|+.+++.+++.+++.|.+ ....|+||++
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~-----------------~~~~g~iv~~ 143 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVE-----------------HDIKGNIINM 143 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCcEEEEE
Confidence 9999999999999976443 45678999999999999999999999999973 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. ++..+|++||+|+.++++.++.|+.++||+||+|+||+++|++.+.... .+.......
T Consensus 144 sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~ 210 (261)
T PRK08936 144 SSVHEQIPW------------PLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFA-DPKQRADVE 210 (261)
T ss_pred ccccccCCC------------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccC-CHHHHHHHH
Confidence 998776553 5678999999999999999999999999999999999999998653221 122223334
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~ 422 (429)
...+.+++.+|+|+|+.++||++++ ..+++|+.+.+|||....+..+
T Consensus 211 ~~~~~~~~~~~~~va~~~~~l~s~~-~~~~~G~~i~~d~g~~~~~~~~ 257 (261)
T PRK08936 211 SMIPMGYIGKPEEIAAVAAWLASSE-ASYVTGITLFADGGMTLYPSFQ 257 (261)
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCcc-cCCccCcEEEECCCcccCcccc
Confidence 4556778899999999999999764 7899999999999988666543
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=299.69 Aligned_cols=253 Identities=16% Similarity=0.103 Sum_probs=191.4
Q ss_pred CCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh--------cCCc-----eEEEEEee
Q psy12836 137 ETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE--------SKNK-----YVLCRKCD 201 (429)
Q Consensus 137 ~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~--------~~~~-----~v~~~~~D 201 (429)
..+++||++|||||+ +|||+++|+.|+++|++|++.++.+ .+....+..... ..+. ++..+.+|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 81 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS 81 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence 457899999999996 9999999999999999999987542 111111110000 0000 01111223
Q ss_pred CCC------------------HHHHHHHHHHHHHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHH
Q psy12836 202 LAS------------------QESIRAFAEEVKKENKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTM 259 (429)
Q Consensus 202 ls~------------------~~sv~~~~~~i~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~ 259 (429)
+++ .++++++++++.+++|++|+||||||... +..+.+.++|++++++|+.|++++++
T Consensus 82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~ 161 (299)
T PRK06300 82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLS 161 (299)
T ss_pred cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 322 24699999999999999999999998642 33667899999999999999999999
Q ss_pred HHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc-chhHHHHHHHHHHHHHHHHH
Q psy12836 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT-QAYNQSKLANVLFTRELAKR 338 (429)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~-~~Y~aSKaal~~l~~~la~e 338 (429)
+++|+|+ + .|+||+++|.++..+. ++. .+|++||+|+++|+++|+.|
T Consensus 162 a~~p~m~------------------~--~G~ii~iss~~~~~~~------------p~~~~~Y~asKaAl~~lt~~la~e 209 (299)
T PRK06300 162 HFGPIMN------------------P--GGSTISLTYLASMRAV------------PGYGGGMSSAKAALESDTKVLAWE 209 (299)
T ss_pred HHHHHhh------------------c--CCeEEEEeehhhcCcC------------CCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 3 3799999998886653 334 37999999999999999999
Q ss_pred hcC-CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 339 LEG-TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 339 l~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+++ +|||||+|+||+++|++...... .+..........+.++..+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 210 l~~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 287 (299)
T PRK06300 210 AGRRWGIRVNTISAGPLASRAGKAIGF-IERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPL-ASAITGETLYVDHGANV 287 (299)
T ss_pred hCCCCCeEEEEEEeCCccChhhhcccc-cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCcce
Confidence 987 59999999999999998754321 1122222333455677889999999999999664 68999999999999887
Q ss_pred ccccccc
Q psy12836 418 RVDGRFS 424 (429)
Q Consensus 418 ~~~~~~~ 424 (429)
....++-
T Consensus 288 ~~~~~~~ 294 (299)
T PRK06300 288 MGIGPEM 294 (299)
T ss_pred ecCCcCc
Confidence 6655543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=320.07 Aligned_cols=248 Identities=21% Similarity=0.290 Sum_probs=210.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++..+++|++|+++++++++++.+.
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999988887766554 135677899999999999999999999
Q ss_pred CCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|+|. +.|+||++|
T Consensus 341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--------------------~~g~iv~is 400 (520)
T PRK06484 341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMS--------------------QGGVIVNLG 400 (520)
T ss_pred cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhc--------------------cCCEEEEEC
Confidence 999999999999863 235678899999999999999999999999984 348999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+++++|+++|+.|++++||+||+|+||+|+|++........+...+.+..
T Consensus 401 S~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~ 468 (520)
T PRK06484 401 SIASLLAL------------PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRR 468 (520)
T ss_pred chhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHh
Confidence 99987764 567899999999999999999999999999999999999999876543212222233444
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFS 424 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~~~ 424 (429)
..+.+++.+|+|+|++++||+++ ...+++|+.+.+|||........++
T Consensus 469 ~~~~~~~~~~~dia~~~~~l~s~-~~~~~~G~~i~vdgg~~~~~~~~~~ 516 (520)
T PRK06484 469 RIPLGRLGDPEEVAEAIAFLASP-AASYVNGATLTVDGGWTAFGDAGDA 516 (520)
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc-cccCccCcEEEECCCccCCCCCccc
Confidence 55667888999999999999965 4679999999999998766654443
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=291.70 Aligned_cols=249 Identities=23% Similarity=0.229 Sum_probs=203.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++|+.+..++..+++. .+.++.++++|++|.++++++++++.
T Consensus 13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999877766665552 12468889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.++++|+||||||.... ..+.+.++++.++++|+.|++++++++.+.|. +...|+||
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~ii 151 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMI------------------PLKKGSIV 151 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHH------------------hcCCceEE
Confidence 999999999999998642 24567899999999999999999999999997 44568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch---hH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS---WL 369 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~---~~ 369 (429)
++||.++..+. ++..+|++||+|++++++.++.|++++||+||+|+||.+.|++......... ..
T Consensus 152 ~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~ 219 (280)
T PLN02253 152 SLCSVASAIGG------------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDA 219 (280)
T ss_pred EecChhhcccC------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhh
Confidence 99999887654 3456899999999999999999999999999999999999997543211111 11
Q ss_pred HHHHHh----HHh-hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 370 STVVLK----PLV-WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 370 ~~~~~~----~~~-~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
...+.. ..+ .++..+|+|+|++++|+++++ ..+++|+.+.+|||.....
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~~-~~~i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 220 LAGFRAFAGKNANLKGVELTVDDVANAVLFLASDE-ARYISGLNLMIDGGFTCTN 273 (280)
T ss_pred hhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCcc-cccccCcEEEECCchhhcc
Confidence 111111 111 134578999999999999654 6899999999999976543
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=293.21 Aligned_cols=246 Identities=23% Similarity=0.227 Sum_probs=195.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++|||| ||||+++|++|+ +|++|++++|+.+++++..+++... +.++.++++|++|.++++++++++ +++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~ 76 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATA-QTLGP 76 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHH-HhcCC
Confidence 689999998 699999999996 8999999999988887777776543 346888999999999999999988 56899
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+||||||+.. ..+++++++++|+.|++++++.+.|.|. + .|++|++||.++..
T Consensus 77 id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~--~g~iv~isS~~~~~ 131 (275)
T PRK06940 77 VTGLVHTAGVSP-----SQASPEAILKVDLYGTALVLEEFGKVIA------------------P--GGAGVVIASQSGHR 131 (275)
T ss_pred CCEEEECCCcCC-----chhhHHHHHHHhhHHHHHHHHHHHHHHh------------------h--CCCEEEEEeccccc
Confidence 999999999753 2467999999999999999999999986 2 36789999988765
Q ss_pred CC-CC-----------cccCC------CCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-
Q psy12836 302 GT-IN-----------KEDLN------SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS- 362 (429)
Q Consensus 302 ~~-~~-----------~~~l~------~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~- 362 (429)
+. .. ..++. .....++..+|++||+|++++++.++.|++++|||||+|+||+++|++....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~ 211 (275)
T PRK06940 132 LPALTAEQERALATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDEL 211 (275)
T ss_pred CcccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhh
Confidence 42 00 00000 0000024678999999999999999999999999999999999999986532
Q ss_pred CCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 363 SYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....++..+.+....|.+++.+|+|+|++++||+++. ..++||+.+.+|||....
T Consensus 212 ~~~~~~~~~~~~~~~p~~r~~~peeia~~~~fL~s~~-~~~itG~~i~vdgg~~~~ 266 (275)
T PRK06940 212 NGPRGDGYRNMFAKSPAGRPGTPDEIAALAEFLMGPR-GSFITGSDFLVDGGATAS 266 (275)
T ss_pred cCCchHHHHHHhhhCCcccCCCHHHHHHHHHHHcCcc-cCcccCceEEEcCCeEEE
Confidence 1111122233444556788999999999999999654 789999999999996543
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=271.72 Aligned_cols=241 Identities=28% Similarity=0.303 Sum_probs=211.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++.|+++++||+..|||++++++|++.|++|+.+.|+++.+....++. + ..+..+..|+++++.+.+++...
T Consensus 2 ~t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~----p-~~I~Pi~~Dls~wea~~~~l~~v- 75 (245)
T KOG1207|consen 2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET----P-SLIIPIVGDLSAWEALFKLLVPV- 75 (245)
T ss_pred cccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC----C-cceeeeEecccHHHHHHHhhccc-
Confidence 34789999999999999999999999999999999999999988877653 2 24888999999988877766544
Q ss_pred HhCCCeeEEEEccccC--CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|.||||||+. .+..+.+.+.+++.|++|+.+.+++++.....+.. +..+|.||++
T Consensus 76 ---~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~-----------------R~~~GaIVNv 135 (245)
T KOG1207|consen 76 ---FPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVD-----------------RQIKGAIVNV 135 (245)
T ss_pred ---CchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhh-----------------ccCCceEEEe
Confidence 7899999999985 45578899999999999999999999997776653 5677899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++.++. .....||++|+|+.+++|.||.|+++++||||+|+|-.+.|+|.+..+. ++.....++
T Consensus 136 SSqas~R~~------------~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWS-DP~K~k~mL 202 (245)
T KOG1207|consen 136 SSQASIRPL------------DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWS-DPDKKKKML 202 (245)
T ss_pred cchhccccc------------CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccC-Cchhccchh
Confidence 999988775 6788999999999999999999999999999999999999999887653 455556688
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+|.+++...+++.++++||+++. ++..||..+.++||++.
T Consensus 203 ~riPl~rFaEV~eVVnA~lfLLSd~-ssmttGstlpveGGfs~ 244 (245)
T KOG1207|consen 203 DRIPLKRFAEVDEVVNAVLFLLSDN-SSMTTGSTLPVEGGFSN 244 (245)
T ss_pred hhCchhhhhHHHHHHhhheeeeecC-cCcccCceeeecCCccC
Confidence 8899999999999999999999775 78999999999999864
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=287.44 Aligned_cols=242 Identities=24% Similarity=0.251 Sum_probs=197.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||+++|++|+++|++|++++|+.. ..+..+++... +.++.++++|+++.++++++++++.+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999853 34445555432 23677899999999999999999999
Q ss_pred hCCCeeEEEEccccC---CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVS---GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~---~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.++++|+||||||.. .+..+.+.+++++.+++|+.+++++++.++|.|. +.+.|+||++
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~~ 142 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHML------------------AQGGGAIVNV 142 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCeEEEE
Confidence 999999999999964 2335678899999999999999999999999997 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC------CC-Cc-
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS------SY-YD- 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~------~~-~~- 366 (429)
||.++.. .+..+|++||+|+++|+++++.|++++||+||+|+||++.|++.... .. ..
T Consensus 143 sS~~~~~--------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 208 (260)
T PRK12823 143 SSIATRG--------------INRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKA 208 (260)
T ss_pred cCccccC--------------CCCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccc
Confidence 9987632 23457999999999999999999999999999999999999863211 00 00
Q ss_pred --hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 367 --SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
+.+.+......+.++..+|+|+|++++||+++. ..+++|+.+.+|||.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~-~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 209 WYQQIVDQTLDSSLMKRYGTIDEQVAAILFLASDE-ASYITGTVLPVGGGD 258 (260)
T ss_pred cHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCcc-cccccCcEEeecCCC
Confidence 111222233455677889999999999999664 678999999999874
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=292.91 Aligned_cols=255 Identities=40% Similarity=0.560 Sum_probs=206.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++|+.++.+++.+++....++.++.++++|++|.++++++++++.
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999998888777777655444578889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+.++++|+||||||...+....+.++++..+++|+.|++.+++.++|.|+ +.+.++||++||
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~------------------~~~~~~iV~vSS 152 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLL------------------PVPGSRVVTVSS 152 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHh------------------hCCCCEEEEECC
Confidence 99999999999999876555567789999999999999999999999997 445689999999
Q ss_pred ccccc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEE--eCCCccCCcccCCCCCchhHHHHH
Q psy12836 297 VAHKR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAV--HPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V--~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
.++.. +.....+......+++..+|++||+|+++|++.+++++++.|++|+++ +||+|+|++.+..+. .. ..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~---~~-~~~ 228 (306)
T PRK06197 153 GGHRIRAAIHFDDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPR---AL-RPV 228 (306)
T ss_pred HHHhccCCCCccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcH---HH-HHH
Confidence 87654 222222333333456778999999999999999999999888777665 799999999876542 11 111
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.......+..+|+++|..+++++.++ +..+|.++..||+.
T Consensus 229 ~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~g~~~~~~~~~ 268 (306)
T PRK06197 229 ATVLAPLLAQSPEMGALPTLRAATDP--AVRGGQYYGPDGFG 268 (306)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHhcCC--CcCCCeEEccCccc
Confidence 11221124578999999999999766 34589999988765
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=284.62 Aligned_cols=248 Identities=23% Similarity=0.302 Sum_probs=211.5
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
++.+++||+++||||++|||+++|++|+++|++|++++|+.+.+++..++++... .++.++.+|+++++++.++++++
T Consensus 5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999988887777775432 35788999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|++|||||.... ..+.+.++|++.+++|+.+++.+++.+++.|. +++.++||+
T Consensus 83 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~ 144 (256)
T PRK06124 83 DAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMK------------------RQGYGRIIA 144 (256)
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 9999999999999997643 25567899999999999999999999999997 456789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+. ++..+|++||+++.++++.++.|+.+.||+||+|+||+++|++.+.... .+.....+
T Consensus 145 ~ss~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~~~~ 211 (256)
T PRK06124 145 ITSIAGQVAR------------AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA-DPAVGPWL 211 (256)
T ss_pred EeechhccCC------------CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc-ChHHHHHH
Confidence 9999887654 5678999999999999999999999999999999999999998654321 12222333
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++.+|+|+|+++++|++++ .++++|+++.+|||...
T Consensus 212 ~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~G~~i~~dgg~~~ 254 (256)
T PRK06124 212 AQRTPLGRWGRPEEIAGAAVFLASPA-ASYVNGHVLAVDGGYSV 254 (256)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCcc-cCCcCCCEEEECCCccc
Confidence 44455667889999999999999664 68999999999998653
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=284.98 Aligned_cols=239 Identities=23% Similarity=0.285 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.++ . . .+..+.++++|+++.++++++++++.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~------~--~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE------T--V--DGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh------h--h--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998754 1 1 123677889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||..... .+.+.+++++.+++|+.+++.+++.+.+.|.+ +...|+||++|
T Consensus 72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~g~ii~is 134 (252)
T PRK07856 72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQ-----------------QPGGGSIVNIG 134 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCcEEEEEc
Confidence 999999999999976432 45678899999999999999999999999873 23458999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++...|++||+++++|++.++.|++++ |+||+|+||+++|++...... .+.....+..
T Consensus 135 S~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~-i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~ 200 (252)
T PRK07856 135 SVSGRRPS------------PGTAAYGAAKAGLLNLTRSLAVEWAPK-VRVNAVVVGLVRTEQSELHYG-DAEGIAAVAA 200 (252)
T ss_pred ccccCCCC------------CCCchhHHHHHHHHHHHHHHHHHhcCC-eEEEEEEeccccChHHhhhcc-CHHHHHHHhh
Confidence 99887654 567899999999999999999999988 999999999999998654321 1222223344
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.++..+|+|+|++++||++++ ..+++|+.|.+|||....
T Consensus 201 ~~~~~~~~~p~~va~~~~~L~~~~-~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 201 TVPLGRLATPADIAWACLFLASDL-ASYVSGANLEVHGGGERP 242 (252)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCcc-cCCccCCEEEECCCcchH
Confidence 556678899999999999999654 679999999999986654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=285.09 Aligned_cols=244 Identities=22% Similarity=0.284 Sum_probs=204.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+++||||++|||+++|+.|+++|++|++++|+.++.++..+++. .++..+++|+++.++++++++++.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999999988777665542 25778899999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||.... ..+.+.++++.++++|+.+++.+++++++.|.+ +...++||++||
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~~~iv~~sS 140 (257)
T PRK07067 78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVE-----------------QGRGGKIINMAS 140 (257)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----------------cCCCcEEEEeCC
Confidence 9999999999997643 355678999999999999999999999999863 224589999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------Cchh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YDSW 368 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~~~ 368 (429)
..+..+. ++..+|++||++++++++.++.|+.++||+||+|+||+++|++.+.... ....
T Consensus 141 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~ 208 (257)
T PRK07067 141 QAGRRGE------------ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGE 208 (257)
T ss_pred HHhCCCC------------CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHH
Confidence 8876654 5678999999999999999999999999999999999999998643210 0111
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.........+++++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 209 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~-~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 209 KKRLVGEAVPLGRMGVPDDLTGMALFLASAD-ADYIVAQTYNVDGGNWM 256 (257)
T ss_pred HHHHHhhcCCCCCccCHHHHHHHHHHHhCcc-cccccCcEEeecCCEeC
Confidence 1222334566778899999999999999764 67899999999998543
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=283.66 Aligned_cols=242 Identities=25% Similarity=0.318 Sum_probs=203.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||+++||||++|||+++|++|+++|++|++++|+.+..+ ...++. ...+..+++|++++++++++++++.
T Consensus 10 ~~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~-~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 10 AFDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAE-VAAQLL----GGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred hcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhh----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999876432 223321 2356688999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||..... .+.+.+++++++++|+.+++++++.+.+.|. +++.++||++
T Consensus 85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~ 146 (255)
T PRK06841 85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMI------------------AAGGGKIVNL 146 (255)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHH------------------hcCCceEEEE
Confidence 9999999999999986432 4567889999999999999999999999997 4457899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. +...+|++||+++++++++++.|++++||+||+|+||+++|++.+.... ......+.
T Consensus 147 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~ 212 (255)
T PRK06841 147 ASQAGVVAL------------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA--GEKGERAK 212 (255)
T ss_pred cchhhccCC------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc--hhHHHHHH
Confidence 998877664 5577899999999999999999999999999999999999998654321 11222234
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+.+++.+|+|+|++++++++++ ..+++|+.+.+|||..
T Consensus 213 ~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 213 KLIPAGRFAYPEEIAAAALFLASDA-AAMITGENLVIDGGYT 253 (255)
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCcc-ccCccCCEEEECCCcc
Confidence 4566778899999999999999664 7889999999999964
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=292.72 Aligned_cols=254 Identities=35% Similarity=0.468 Sum_probs=202.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++. .+.++++|++|.++++++++++.
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999988877666552 26778999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+.++++|+||||||........+.++++..+++|+.|++++++.++|.|. +.+.++||++||
T Consensus 95 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~------------------~~~~~~iV~vSS 156 (315)
T PRK06196 95 DSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALA------------------AGAGARVVALSS 156 (315)
T ss_pred hcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCeEEEECC
Confidence 99999999999999876555567788999999999999999999999997 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK- 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~- 375 (429)
..+..+.....+......+++..+|++||+|++.+++.++.++.++||+||+|+||++.|++.+....... .......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-~~~~~~~~ 235 (315)
T PRK06196 157 AGHRRSPIRWDDPHFTRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQ-VALGWVDE 235 (315)
T ss_pred HHhccCCCCccccCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhh-hhhhhhhh
Confidence 87654432222222233456678999999999999999999999999999999999999998765432110 0000111
Q ss_pred -HHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 -PLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 -~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+. .+..+|+++|.+++|+++++.....+|.++..++..
T Consensus 236 ~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~~~~ 277 (315)
T PRK06196 236 HGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIA 277 (315)
T ss_pred hhhhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCCCccc
Confidence 1111 257899999999999998887666677777655433
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=282.30 Aligned_cols=245 Identities=22% Similarity=0.222 Sum_probs=203.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+|+++||||++|||+++|++|+++|++|+++++ +.+.++...+++... +.++..+++|+++.++++++++++.+.+
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999999998865 556666666666443 2468889999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|++|||||..... .+.+.+++++++++|+.+++++++++.++|.+ +...|+||++||.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----------------~~~~g~ii~isS~ 141 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVK-----------------QGQGGRIINITSV 141 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCeEEEEEeec
Confidence 9999999999986533 45688999999999999999999999999863 2235899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
.+..+. ++..+|+++|+++.+++++++.++.++||+||+|+||+++|++..... ...........
T Consensus 142 ~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~ 206 (256)
T PRK12743 142 HEHTPL------------PGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD---SDVKPDSRPGI 206 (256)
T ss_pred cccCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC---hHHHHHHHhcC
Confidence 776554 567899999999999999999999999999999999999999865432 11112223345
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+..+..+|+|+|++++|+++. ...+++|+++.+|||...+..
T Consensus 207 ~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~~dgg~~~~~~ 248 (256)
T PRK12743 207 PLGRPGDTHEIASLVAWLCSE-GASYTTGQSLIVDGGFMLANP 248 (256)
T ss_pred CCCCCCCHHHHHHHHHHHhCc-cccCcCCcEEEECCCccccCC
Confidence 556788999999999999965 467899999999999876643
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=283.43 Aligned_cols=247 Identities=24% Similarity=0.294 Sum_probs=202.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||++|||+++|++|+++|++|++++|+.+ ..+..+++... +.++.++++|+++.++++++++++.+.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999875 33444444332 246788899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... .+.+.+++++.+++|+.+++.+++.+++.|. +.+.++||++||
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~isS 141 (263)
T PRK08226 80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMI------------------ARKDGRIVMMSS 141 (263)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCcEEEEECc
Confidence 99999999999975432 4567889999999999999999999999987 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-----CCchhHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-----YYDSWLST 371 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-----~~~~~~~~ 371 (429)
..+.... .++...|+++|+++++++++++.|+.++||+||+|+||+++|++.+... ....+...
T Consensus 142 ~~~~~~~-----------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~ 210 (263)
T PRK08226 142 VTGDMVA-----------DPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLT 210 (263)
T ss_pred HHhcccC-----------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHH
Confidence 7763211 1456789999999999999999999999999999999999999865431 11122223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+....|.+++.+|+|+|+.++||+++. ..+++|+.+.+|||..+.
T Consensus 211 ~~~~~~p~~~~~~~~~va~~~~~l~~~~-~~~~~g~~i~~dgg~~~~ 256 (263)
T PRK08226 211 EMAKAIPLRRLADPLEVGELAAFLASDE-SSYLTGTQNVIDGGSTLP 256 (263)
T ss_pred HHhccCCCCCCCCHHHHHHHHHHHcCch-hcCCcCceEeECCCcccC
Confidence 3344456667889999999999999654 679999999999997654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=289.40 Aligned_cols=237 Identities=26% Similarity=0.292 Sum_probs=198.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++++|+++||||++|||+++|+.|+++|++|++++|+.++.. ..++..+++|++++++++++++++.+
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEIIE 73 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999875432 12577889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC-----------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 218 ENKKINVLINNAGVSGCR-----------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~-----------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
.++++|++|||||...+. .+.+.++|++++++|+.+++++++++.++|. ++
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~ 135 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMV------------------KQ 135 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHH------------------hc
Confidence 999999999999975321 2467899999999999999999999999997 44
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc-CCcccCCCC-
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN-TDILRHSSY- 364 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~-T~~~~~~~~- 364 (429)
+.|+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++ |++......
T Consensus 136 ~~g~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~ 203 (266)
T PRK06171 136 HDGVIVNMSSEAGLEGS------------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEE 203 (266)
T ss_pred CCcEEEEEccccccCCC------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhh
Confidence 66899999999887664 5678999999999999999999999999999999999996 665332110
Q ss_pred --------CchhHHHHHHh--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 365 --------YDSWLSTVVLK--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 365 --------~~~~~~~~~~~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
........+.. .+|.+++.+|+|+|+++.||+++. ..++||+.+.+|||..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~-~~~itG~~i~vdgg~~ 264 (266)
T PRK06171 204 ALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDR-ASYITGVTTNIAGGKT 264 (266)
T ss_pred hhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeeeeccc-cccceeeEEEecCccc
Confidence 01111222323 467788999999999999999654 6899999999999864
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=283.25 Aligned_cols=238 Identities=20% Similarity=0.243 Sum_probs=196.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHH----cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELAK----RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~----~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++||||++|||+++|++|++ +|++|++++|+.+++++..+++....++..+.++++|+++.++++++++++.+.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 689999999999999999997 7999999999999988888887654344578889999999999999999998877
Q ss_pred CC----eeEEEEccccCCCC----CC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 220 KK----INVLINNAGVSGCR----KM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 220 g~----iD~lI~nAG~~~~~----~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+. .|+||||||..... .+ .+.+++++++++|+.+++++++.++|.|.++ ....++
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~----------------~~~~~~ 145 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDS----------------PGLNRT 145 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhc----------------CCCCCE
Confidence 65 37999999975321 21 2468999999999999999999999999731 123579
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--Cchh
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSW 368 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~~ 368 (429)
||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+++|+|.+.... ..+.
T Consensus 146 iv~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~ 213 (256)
T TIGR01500 146 VVNISSLCAIQPF------------KGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPD 213 (256)
T ss_pred EEEECCHHhCCCC------------CCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChh
Confidence 9999999876653 5678999999999999999999999999999999999999998753211 1122
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
....+....+.+++.+|+|+|+.++++++. .+++||+++..
T Consensus 214 ~~~~~~~~~~~~~~~~p~eva~~~~~l~~~--~~~~~G~~~~~ 254 (256)
T TIGR01500 214 MRKGLQELKAKGKLVDPKVSAQKLLSLLEK--DKFKSGAHVDY 254 (256)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCcCCcceeec
Confidence 333344556778899999999999999953 57899998764
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=280.42 Aligned_cols=240 Identities=23% Similarity=0.286 Sum_probs=197.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++||||++|||+++|+.|+++|++|+++++ +.++.+....++ + .++.++++|+++.++++++++++.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL----G-DRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh----C-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998765 445444443332 1 3678899999999999999999999
Q ss_pred hCCC-eeEEEEccccCC--------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 218 ENKK-INVLINNAGVSG--------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 218 ~~g~-iD~lI~nAG~~~--------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
.+++ +|++|||||... +..+.+.+++++.+++|+.+++++++.+++.|. ..+.
T Consensus 77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~ 138 (253)
T PRK08642 77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMR------------------EQGF 138 (253)
T ss_pred HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHH------------------hcCC
Confidence 8887 999999998632 124567899999999999999999999999987 4456
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||..+..+. .+..+|++||+|+++++++++++++++||+||+|+||+++|+...... .+.
T Consensus 139 g~iv~iss~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~--~~~ 204 (253)
T PRK08642 139 GRIINIGTNLFQNPV------------VPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT--PDE 204 (253)
T ss_pred eEEEEECCccccCCC------------CCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC--CHH
Confidence 899999997654332 456789999999999999999999999999999999999998654322 123
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+....+..++.+|+|+|++++||++++ ..+++|+.|.+|||..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~vdgg~~ 251 (253)
T PRK08642 205 VFDLIAATTPLRKVTTPQEFADAVLFFASPW-ARAVTGQNLVVDGGLV 251 (253)
T ss_pred HHHHHHhcCCcCCCCCHHHHHHHHHHHcCch-hcCccCCEEEeCCCee
Confidence 3333445566678899999999999999764 6799999999999864
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.28 Aligned_cols=232 Identities=21% Similarity=0.246 Sum_probs=190.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||++|||+++|++|+++|++|++++|+.+... +++... .+.++.+|+++.++++++++++.+.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 74 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA----GAQCIQADFSTNAGIMAFIDELKQHTDG 74 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc----CCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 589999999999999999999999999999999876543 222221 2567899999999999999999999999
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||.... ..+.+.++|++++++|+.+++.+++.++|.|.+. ..+.|+||++||..+
T Consensus 75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~----------------~~~~g~iv~~ss~~~ 138 (236)
T PRK06483 75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGH----------------GHAASDIIHITDYVV 138 (236)
T ss_pred ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhC----------------CCCCceEEEEcchhh
Confidence 9999999997533 2455789999999999999999999999999731 112589999999877
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++..+|++||+|+++|++.++.|+++ +||||+|+||++.|+... .+...+......+.
T Consensus 139 ~~~~------------~~~~~Y~asKaal~~l~~~~a~e~~~-~irvn~v~Pg~~~~~~~~-----~~~~~~~~~~~~~~ 200 (236)
T PRK06483 139 EKGS------------DKHIAYAASKAALDNMTLSFAAKLAP-EVKVNSIAPALILFNEGD-----DAAYRQKALAKSLL 200 (236)
T ss_pred ccCC------------CCCccHHHHHHHHHHHHHHHHHHHCC-CcEEEEEccCceecCCCC-----CHHHHHHHhccCcc
Confidence 6553 55778999999999999999999987 599999999999876421 11222223334456
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
++...|+|+|+++.||++ ..++||+.+.+|||...
T Consensus 201 ~~~~~~~~va~~~~~l~~---~~~~~G~~i~vdgg~~~ 235 (236)
T PRK06483 201 KIEPGEEEIIDLVDYLLT---SCYVTGRSLPVDGGRHL 235 (236)
T ss_pred ccCCCHHHHHHHHHHHhc---CCCcCCcEEEeCccccc
Confidence 778899999999999995 36899999999999754
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=283.84 Aligned_cols=240 Identities=23% Similarity=0.278 Sum_probs=198.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+.. . ..++.++++|++|.++++++++++.
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------L-----PEGVEFVAADLTTAEGCAAVARAVL 72 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------c-----CCceeEEecCCCCHHHHHHHHHHHH
Confidence 5578999999999999999999999999999999999986531 1 1257788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.++++|++|||||.... ....+.+++++++++|+.+++++++.++|+|+ +++.|+||
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~ii 134 (260)
T PRK06523 73 ERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMI------------------ARGSGVII 134 (260)
T ss_pred HHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHH------------------hcCCcEEE
Confidence 999999999999996532 24567899999999999999999999999998 44568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------- 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------- 364 (429)
++||..+..+.. .+..+|++||+++++|+++++.|+++.||+||+|+||+++|++......
T Consensus 135 ~isS~~~~~~~~-----------~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~ 203 (260)
T PRK06523 135 HVTSIQRRLPLP-----------ESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGT 203 (260)
T ss_pred EEecccccCCCC-----------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCC
Confidence 999988765421 2577899999999999999999999999999999999999998643210
Q ss_pred CchhHHHHH---HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 365 YDSWLSTVV---LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 365 ~~~~~~~~~---~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+...+.+ ...+|.++..+|+|+|++++||+++. ..+++|+.+.+|||..+
T Consensus 204 ~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~s~~-~~~~~G~~~~vdgg~~~ 258 (260)
T PRK06523 204 DYEGAKQIIMDSLGGIPLGRPAEPEEVAELIAFLASDR-AASITGTEYVIDGGTVP 258 (260)
T ss_pred CHHHHHHHHHHHhccCccCCCCCHHHHHHHHHHHhCcc-cccccCceEEecCCccC
Confidence 001111111 12346677889999999999999654 67999999999998655
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=278.14 Aligned_cols=252 Identities=27% Similarity=0.370 Sum_probs=208.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|++|+++|++|++++|+.+++++...++.... .++.++.+|+++.++++++++++.
T Consensus 4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 4 SINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 556889999999999999999999999999999999999998887777664433 357889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||..... .+.+.++++.++++|+.+++.+++++++.|.+...... .....++||++
T Consensus 82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~iv~~ 151 (258)
T PRK06949 82 TEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAG----------NTKPGGRIINI 151 (258)
T ss_pred HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCC----------CCCCCeEEEEE
Confidence 9999999999999975432 45577899999999999999999999999874321000 01125899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+. +...+|+++|++++.+++.++.++.++||+||+|+||+++|++....+. ......+.
T Consensus 152 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~--~~~~~~~~ 217 (258)
T PRK06949 152 ASVAGLRVL------------PQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE--TEQGQKLV 217 (258)
T ss_pred CcccccCCC------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC--hHHHHHHH
Confidence 998876543 4577899999999999999999999999999999999999998765432 11223334
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..++..+...|+|+|+.++||++++ ..+++|+++.+|||+
T Consensus 218 ~~~~~~~~~~p~~~~~~~~~l~~~~-~~~~~G~~i~~dgg~ 257 (258)
T PRK06949 218 SMLPRKRVGKPEDLDGLLLLLAADE-SQFINGAIISADDGF 257 (258)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhChh-hcCCCCcEEEeCCCC
Confidence 4556678999999999999999754 689999999999985
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=278.87 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=204.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+..++.++.+|+++.++++++++++.+.+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999998888777777655443346889999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS~~ 298 (429)
+|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|. +++ .++||++||.+
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~------------------~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMI------------------RDGIQGRIIQINSKS 143 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHH------------------hCCCCcEEEEecCcc
Confidence 99999999976543 5567889999999999999999999999997 333 58999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc-cCCcccCCCC--------CchhH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV-NTDILRHSSY--------YDSWL 369 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v-~T~~~~~~~~--------~~~~~ 369 (429)
+..+. +...+|++||+|+++++++++.|++++||+||+|+||.+ .|++...... ..++.
T Consensus 144 ~~~~~------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (259)
T PRK12384 144 GKVGS------------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEV 211 (259)
T ss_pred cccCC------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHH
Confidence 76653 456789999999999999999999999999999999964 6776542210 11222
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.+....+.+++.+|+|+++++++|+++. ..+++|+.|.++||...
T Consensus 212 ~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~-~~~~~G~~~~v~~g~~~ 258 (259)
T PRK12384 212 EQYYIDKVPLKRGCDYQDVLNMLLFYASPK-ASYCTGQSINVTGGQVM 258 (259)
T ss_pred HHHHHHhCcccCCCCHHHHHHHHHHHcCcc-cccccCceEEEcCCEEe
Confidence 233344556678889999999999999764 57899999999998653
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=288.46 Aligned_cols=231 Identities=25% Similarity=0.324 Sum_probs=194.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++|.++++++++++.+
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988888776533 3678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+|++|++|||||+... ..+.+.+++++++++|+.|++++++.++|+|+ +++.|+||++|
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~------------------~~~~g~iV~is 142 (330)
T PRK06139 81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFK------------------KQGHGIFINMI 142 (330)
T ss_pred hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------HcCCCEEEEEc
Confidence 99999999999998644 35678899999999999999999999999998 55678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-CeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGT-GITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~-gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
|..+..+. +...+|++||+|+.+|+++|+.|+.+. ||+|++|+||+++|++....... ...
T Consensus 143 S~~~~~~~------------p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~---~~~--- 204 (330)
T PRK06139 143 SLGGFAAQ------------PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANY---TGR--- 204 (330)
T ss_pred ChhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccc---ccc---
Confidence 98887664 567899999999999999999999875 99999999999999987543210 000
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSG 406 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG 406 (429)
...+.....+|+++|+++++++..++.....|
T Consensus 205 ~~~~~~~~~~pe~vA~~il~~~~~~~~~~~~g 236 (330)
T PRK06139 205 RLTPPPPVYDPRRVAKAVVRLADRPRATTTVG 236 (330)
T ss_pred cccCCCCCCCHHHHHHHHHHHHhCCCCEEEcC
Confidence 00111235699999999999997775544444
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=274.65 Aligned_cols=241 Identities=25% Similarity=0.325 Sum_probs=200.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|++|+++||||++|||+++|++|+++|++|++.. ++....++..+++... +.++..+.+|++|.++++++++++.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999988854 4555555555554332 346778899999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||.... ..+.+.+++++++++|+.+++.+++.+++.|. +++.++||++||
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~isS 140 (246)
T PRK12938 79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMV------------------ERGWGRIINISS 140 (246)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCeEEEEEec
Confidence 9999999999998643 25568899999999999999999999999997 456689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. ++...|+++|+++++++++++.|+.+.||++|+|+||++.|++.+... +.....+...
T Consensus 141 ~~~~~~~------------~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~ 205 (246)
T PRK12938 141 VNGQKGQ------------FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR---PDVLEKIVAT 205 (246)
T ss_pred hhccCCC------------CCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcC---hHHHHHHHhc
Confidence 8876654 567789999999999999999999999999999999999999876532 2222333334
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+..+..+|+++++.++||++++ ..+++|+.+.+||+..
T Consensus 206 ~~~~~~~~~~~v~~~~~~l~~~~-~~~~~g~~~~~~~g~~ 244 (246)
T PRK12938 206 IPVRRLGSPDEIGSIVAWLASEE-SGFSTGADFSLNGGLH 244 (246)
T ss_pred CCccCCcCHHHHHHHHHHHcCcc-cCCccCcEEEECCccc
Confidence 55567889999999999999765 5789999999999853
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=275.11 Aligned_cols=244 Identities=24% Similarity=0.278 Sum_probs=204.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEE-EEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil-~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|.||+++||||++|||+++|++|+++|++|++ .+|+.++.++..++++... .++.++.+|++|+++++++++++.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEE 79 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999876 4788888777777765432 46888999999999999999999999
Q ss_pred CCCeeEEEEccccCC--CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSG--CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||... +..+.+.++++.++++|+.+++++++++++.|. +++.|+||++||
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~~sS 141 (250)
T PRK08063 80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLME------------------KVGGGKIISLSS 141 (250)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCeEEEEEcc
Confidence 999999999999753 335667889999999999999999999999997 456789999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. ++...|++||+++++|+++++.++.+.||++|+|+||++.|++....... ..........
T Consensus 142 ~~~~~~~------------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~-~~~~~~~~~~ 208 (250)
T PRK08063 142 LGSIRYL------------ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR-EELLEDARAK 208 (250)
T ss_pred hhhccCC------------CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc-hHHHHHHhcC
Confidence 8765543 45778999999999999999999999999999999999999987554321 2222222333
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.++..+++|+|+.++++++++ ..+++|+.+.+|||..+
T Consensus 209 ~~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~~~gg~~~ 248 (250)
T PRK08063 209 TPAGRMVEPEDVANAVLFLCSPE-ADMIRGQTIIVDGGRSL 248 (250)
T ss_pred CCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEEECCCeee
Confidence 44566789999999999999765 56889999999998764
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=284.00 Aligned_cols=235 Identities=25% Similarity=0.264 Sum_probs=196.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.. +..+..++||++|.++++++++++.
T Consensus 4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 4 MTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999988877776632 2356777899999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||+... ..+.+.++|++++++|+.|++++++.++|.|. + ..|+||++
T Consensus 81 ~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~------------------~-~~g~iv~i 141 (296)
T PRK05872 81 ERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALI------------------E-RRGYVLQV 141 (296)
T ss_pred HHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------H-cCCEEEEE
Confidence 999999999999998643 25678899999999999999999999999986 3 34899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++...|++||+++++|+++++.|++++||+||+|+||+++|++.+......+.. ..+.
T Consensus 142 sS~~~~~~~------------~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~-~~~~ 208 (296)
T PRK05872 142 SSLAAFAAA------------PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAF-RELR 208 (296)
T ss_pred eCHhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhH-HHHH
Confidence 999887664 567899999999999999999999999999999999999999976543211111 1122
Q ss_pred h--HHhhhccCCHHHHHHHHHHHhcCCCcccCCce
Q psy12836 375 K--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGK 407 (429)
Q Consensus 375 ~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~ 407 (429)
. +.+..+..+|+|+|+.+++++++. ..+++|.
T Consensus 209 ~~~~~p~~~~~~~~~va~~i~~~~~~~-~~~i~~~ 242 (296)
T PRK05872 209 ARLPWPLRRTTSVEKCAAAFVDGIERR-ARRVYAP 242 (296)
T ss_pred hhCCCcccCCCCHHHHHHHHHHHHhcC-CCEEEch
Confidence 2 224457789999999999999664 4555554
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=276.54 Aligned_cols=249 Identities=24% Similarity=0.261 Sum_probs=203.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+.++. +..+++.... .++.++++|+++.++++++++++.
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999998776 5555654433 367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+.++++|++|||||..... .+.+.++++..+++|+.+++.+++.+.|.|. + ..++||++|
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~-~~~~iv~~s 139 (258)
T PRK08628 79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLK------------------A-SRGAIVNIS 139 (258)
T ss_pred HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhh------------------c-cCcEEEEEC
Confidence 9999999999999975432 2234489999999999999999999999886 2 348999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--Cch-hHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDS-WLSTV 372 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~-~~~~~ 372 (429)
|..+..+. ++..+|++||++++++++.++.|+.++||+||+|+||.++|++.+.... ..+ .....
T Consensus 140 s~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~ 207 (258)
T PRK08628 140 SKTALTGQ------------GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAA 207 (258)
T ss_pred CHHhccCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHH
Confidence 98887654 5678999999999999999999999999999999999999998643210 011 11112
Q ss_pred HHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 373 VLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 373 ~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+....+.. ++.+|+|+|+.++|++++. ..+++|+++.+||+......
T Consensus 208 ~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 208 ITAKIPLGHRMTTAEEIADTAVFLLSER-SSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred HHhcCCccccCCCHHHHHHHHHHHhChh-hccccCceEEecCCcccccc
Confidence 22233432 5789999999999999765 57889999999999876654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=275.13 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=200.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++....+...+.+++||++|+++++++++++.+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999888887777554333456677999999999999999999999
Q ss_pred CCeeEEEEccccCC-----CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 220 KKINVLINNAGVSG-----CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 220 g~iD~lI~nAG~~~-----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|||||... ...+.+.++++..+++|+.+++.+++.++|.|+ +++.++||++
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~~ 143 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFK------------------KQGGGNLVNI 143 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hcCCceEEEE
Confidence 99999999998542 224567899999999999999999999999997 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+... . ..+.........|++||++++++++.++.|+.+.||+||+|+||.+.++... .....+.
T Consensus 144 sS~~~~~~~~~-~-~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~-------~~~~~~~ 214 (256)
T PRK09186 144 SSIYGVVAPKF-E-IYEGTSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE-------AFLNAYK 214 (256)
T ss_pred echhhhccccc-h-hccccccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH-------HHHHHHH
Confidence 99877643210 0 0011111223479999999999999999999999999999999988776421 1212222
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+...+.+|+|+|+++++++++. ..+++|+++.+|||..
T Consensus 215 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~g~~ 255 (256)
T PRK09186 215 KCCNGKGMLDPDDICGTLVFLLSDQ-SKYITGQNIIVDDGFS 255 (256)
T ss_pred hcCCccCCCCHHHhhhhHhheeccc-cccccCceEEecCCcc
Confidence 2233456789999999999999765 6789999999999865
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=284.26 Aligned_cols=248 Identities=22% Similarity=0.250 Sum_probs=198.8
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...+++||++|||||++|||+++|++|+++|++|++.+++ .+..++..+++... +.++.++++|++|.+++++++++
T Consensus 6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 44566666766543 34788899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+ +|++|+||||||+.... .+.+.++|+..+++|+.|++++++.+.++|++..... .....|+||
T Consensus 84 ~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~-----------~~~~~g~iv 151 (306)
T PRK07792 84 AVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAA-----------GGPVYGRIV 151 (306)
T ss_pred HHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccc-----------CCCCCcEEE
Confidence 998 99999999999987543 4568899999999999999999999999987421100 011248999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++...|++||+|+++|++.++.|+.++||+||+|+|| +.|+|........+...
T Consensus 152 ~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg-~~t~~~~~~~~~~~~~~-- 216 (306)
T PRK07792 152 NTSSEAGLVGP------------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPR-ARTAMTADVFGDAPDVE-- 216 (306)
T ss_pred EECCcccccCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC-CCCchhhhhccccchhh--
Confidence 99999887654 4577899999999999999999999999999999999 48887643211101110
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. ......+|+++|..++||+++. ..+++|++|.++||...
T Consensus 217 -~---~~~~~~~pe~va~~v~~L~s~~-~~~~tG~~~~v~gg~~~ 256 (306)
T PRK07792 217 -A---GGIDPLSPEHVVPLVQFLASPA-AAEVNGQVFIVYGPMVT 256 (306)
T ss_pred -h---hccCCCCHHHHHHHHHHHcCcc-ccCCCCCEEEEcCCeEE
Confidence 0 0112358999999999999664 56899999999988644
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=273.86 Aligned_cols=240 Identities=24% Similarity=0.324 Sum_probs=200.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||++++++|+++|++|++++|+.+++++..+++ +.++.++++|+++.+++.++++.+.+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999987776655544 235778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... .+.+.+++++++++|+.+++++++++.|+|. . .+++|+++|
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~--~~~~i~~~S 137 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLA------------------N--PASIVLNGS 137 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------c--CCEEEEEec
Confidence 99999999999976432 4568899999999999999999999999885 2 378999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~~~~ 373 (429)
.++..+. +...+|+++|+++++++++++.|+.++||++++|+||.++|++.+..... .+...+.+
T Consensus 138 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~ 205 (249)
T PRK06500 138 INAHIGM------------PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQI 205 (249)
T ss_pred hHhccCC------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHH
Confidence 8877664 55789999999999999999999999999999999999999986543211 11122223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+..+..+|+|+|++++++++++ ..+++|+.+.+|||..
T Consensus 206 ~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~i~~~gg~~ 247 (249)
T PRK06500 206 QALVPLGRFGTPEEIAKAVLYLASDE-SAFIVGSEIIVDGGMS 247 (249)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCcc-ccCccCCeEEECCCcc
Confidence 33345566789999999999999754 5799999999999853
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=275.27 Aligned_cols=240 Identities=24% Similarity=0.241 Sum_probs=199.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||++|||+++|+.|+++|++|++++|+.++.++..+++ +.++.++++|+++.++++++++++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999887766554433 2357788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+|++|++|||||...+ ..+.+.++|++.+++|+.+++++++.+.|+|. + ..|+||
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~-~~g~ii 140 (255)
T PRK05717 80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLR------------------A-HNGAIV 140 (255)
T ss_pred HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------H-cCcEEE
Confidence 999999999999998643 24568889999999999999999999999986 2 248999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. +...+|++||+|++++++.++.++.+ +|+||+|+||+++|++...... ......
T Consensus 141 ~~sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~~~~~-~i~v~~i~Pg~i~t~~~~~~~~--~~~~~~ 205 (255)
T PRK05717 141 NLASTRARQSE------------PDTEAYAASKGGLLALTHALAISLGP-EIRVNAVSPGWIDARDPSQRRA--EPLSEA 205 (255)
T ss_pred EEcchhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHhcC-CCEEEEEecccCcCCccccccc--hHHHHH
Confidence 99998887654 45678999999999999999999986 4999999999999997543211 111111
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.....+.++..+|+|+|..+++++++. ..+++|+.+.+||+..
T Consensus 206 ~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~gg~~ 248 (255)
T PRK05717 206 DHAQHPAGRVGTVEDVAAMVAWLLSRQ-AGFVTGQEFVVDGGMT 248 (255)
T ss_pred HhhcCCCCCCcCHHHHHHHHHHHcCch-hcCccCcEEEECCCce
Confidence 112344567889999999999999654 5789999999999864
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=276.26 Aligned_cols=246 Identities=19% Similarity=0.207 Sum_probs=203.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++++|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++.... .++.++++|++++++++++++++.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999888777666665432 256788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||.... ..+.+.+++++++++|+.|+++++++++|.|. ++ .|+||++
T Consensus 82 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~------------------~~-~g~iv~i 142 (264)
T PRK07576 82 DEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLR------------------RP-GASIIQI 142 (264)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hC-CCEEEEE
Confidence 999999999999986532 25567889999999999999999999999886 32 4899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc-CCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN-TDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~-T~~~~~~~~~~~~~~~~~ 373 (429)
||.++..+. ++...|++||+++++|+++++.|+.++||+|++|+||.+. |+....... .......+
T Consensus 143 ss~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~-~~~~~~~~ 209 (264)
T PRK07576 143 SAPQAFVPM------------PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAP-SPELQAAV 209 (264)
T ss_pred CChhhccCC------------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhccc-CHHHHHHH
Confidence 998876553 5678999999999999999999999999999999999996 664433211 12222223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+..+..+|+|+|+.++++++++ ..+++|+++.+||++..
T Consensus 210 ~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~~~gg~~~ 252 (264)
T PRK07576 210 AQSVPLKRNGTKQDIANAALFLASDM-ASYITGVVLPVDGGWSL 252 (264)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcChh-hcCccCCEEEECCCccc
Confidence 33455667889999999999999654 67899999999999753
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=270.55 Aligned_cols=231 Identities=23% Similarity=0.296 Sum_probs=187.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||+||||+++|++|+++|++|++++| +.++.++..+++ .+.++.+|++|.+++.+++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~--- 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRK--- 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHH---
Confidence 478999999999999999999999999999998876 445544443332 245678999999988877653
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|++|||||.... ..+.+.+++++++++|+.+++++++.+++.|. ..|+||++|
T Consensus 73 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--------------------~~g~iv~is 131 (237)
T PRK12742 73 -SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMP--------------------EGGRIIIIG 131 (237)
T ss_pred -hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHh--------------------cCCeEEEEe
Confidence 5789999999998643 24567899999999999999999999999885 248999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+.... .++..+|+++|++++++++.++.+++++||+||+|+||+++|++..... + ..+....
T Consensus 132 S~~~~~~~-----------~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~---~-~~~~~~~ 196 (237)
T PRK12742 132 SVNGDRMP-----------VAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG---P-MKDMMHS 196 (237)
T ss_pred ccccccCC-----------CCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc---H-HHHHHHh
Confidence 98763211 2567789999999999999999999999999999999999999865432 1 2222333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+..++.+|+|+|+.++||+++. ..+++|+.+.+|||+.
T Consensus 197 ~~~~~~~~~p~~~a~~~~~l~s~~-~~~~~G~~~~~dgg~~ 236 (237)
T PRK12742 197 FMAIKRHGRPEEVAGMVAWLAGPE-ASFVTGAMHTIDGAFG 236 (237)
T ss_pred cCCCCCCCCHHHHHHHHHHHcCcc-cCcccCCEEEeCCCcC
Confidence 445677899999999999999654 7899999999999864
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=270.32 Aligned_cols=245 Identities=27% Similarity=0.334 Sum_probs=208.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||+||||+++|++|+++|++|++++|+.+++++..++++... .++.++++|+++.++++++++++.+
T Consensus 3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 3 SNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999988887777765432 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.++++..+++|+.+++.+++.+.+.|. +++.|++|++|
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~is 142 (250)
T PRK12939 81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLR------------------DSGRGRIVNLA 142 (250)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCeEEEEEC
Confidence 999999999999986543 4567889999999999999999999999987 44578999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. +....|+++|++++++++.++.++.+.||++++|+||+++|++.+.... ......+..
T Consensus 143 S~~~~~~~------------~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~ 208 (250)
T PRK12939 143 SDTALWGA------------PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DERHAYYLK 208 (250)
T ss_pred chhhccCC------------CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHHHHHHHh
Confidence 98876654 4567899999999999999999999999999999999999998765431 122233334
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+..++.+|+|+|+++++++.++ .++++|++|..|||...
T Consensus 209 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~i~~~gg~~~ 249 (250)
T PRK12939 209 GRALERLQVPDDVAGAVLFLLSDA-ARFVTGQLLPVNGGFVM 249 (250)
T ss_pred cCCCCCCCCHHHHHHHHHHHhCcc-ccCccCcEEEECCCccc
Confidence 445567889999999999999654 67899999999998653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=274.15 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=202.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++..+.+|+++.++++++++++.++
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999988877777765432 36788999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|++|||||...+ ..+.+.+++++++++|+.+++.+++.+.+.|. +. .++||++|
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~-~~~ii~~s 140 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALA------------------ES-GGSIVMIN 140 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hC-CCEEEEEe
Confidence 9999999999997543 24567899999999999999999999999986 32 37999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCch
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDS 367 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~ 367 (429)
|..+..+. ++...|+++|+++++++++++.|++++||++|+|+||++.|++..... ...+
T Consensus 141 S~~~~~~~------------~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~ 208 (258)
T PRK07890 141 SMVLRHSQ------------PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVE 208 (258)
T ss_pred chhhccCC------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHH
Confidence 98876553 567889999999999999999999999999999999999998754311 0112
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.....+....+..+..+|+|+|++++++++.. ..+++|+.+.+|||..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~-~~~~~G~~i~~~gg~~ 256 (258)
T PRK07890 209 QIYAETAANSDLKRLPTDDEVASAVLFLASDL-ARAITGQTLDVNCGEY 256 (258)
T ss_pred HHHHHHhhcCCccccCCHHHHHHHHHHHcCHh-hhCccCcEEEeCCccc
Confidence 22222223345566789999999999999653 5689999999998854
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.09 Aligned_cols=247 Identities=33% Similarity=0.503 Sum_probs=194.3
Q ss_pred EEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 146 IVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 146 LITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
|||||++|||+++|++|+++| ++|++++|+.+++++..+++... +.++.++++|++|.++++++++++.+.++++|+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 78 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV 78 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence 699999999999999999999 99999999998887777766422 236788899999999999999999988899999
Q ss_pred EEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC--CcEEEEEcCccc
Q psy12836 225 LINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA--PSRIINVSSVAH 299 (429)
Q Consensus 225 lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~IV~vSS~~~ 299 (429)
||||||+..+ ..+.+.++|+++|++|+.|++++++.++|.|. +++ .|+||++||.++
T Consensus 79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~------------------~~~~~~g~IV~vsS~~~ 140 (308)
T PLN00015 79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLK------------------KSDYPSKRLIIVGSITG 140 (308)
T ss_pred EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCCCCEEEEEecccc
Confidence 9999998543 24568899999999999999999999999997 333 589999999887
Q ss_pred ccCCC--------CcccCC---------------CCCCCCCcchhHHHHHHHHHHHHHHHHHhcC-CCeEEEEEeCCCc-
Q psy12836 300 KRGTI--------NKEDLN---------------SENSYDPTQAYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIV- 354 (429)
Q Consensus 300 ~~~~~--------~~~~l~---------------~~~~~~~~~~Y~aSKaal~~l~~~la~el~~-~gIrVn~V~PG~v- 354 (429)
..+.. +..++. ....+.+..+|++||+|+..+++.+++++.+ .||+||+|+||+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 220 (308)
T PLN00015 141 NTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIA 220 (308)
T ss_pred ccccccccCCCccchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCccc
Confidence 53211 000000 0123456788999999999999999999975 6999999999999
Q ss_pred cCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 355 NTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 355 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.|+|.+.......+.. ......+..+..+|+++|+.++++++++. ...+|+||..+|+
T Consensus 221 ~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~pe~~a~~~~~l~~~~~-~~~~G~~~~~~g~ 278 (308)
T PLN00015 221 TTGLFREHIPLFRLLF-PPFQKYITKGYVSEEEAGKRLAQVVSDPS-LTKSGVYWSWNGG 278 (308)
T ss_pred CccccccccHHHHHHH-HHHHHHHhcccccHHHhhhhhhhhccccc-cCCCccccccCCc
Confidence 7898765321101100 01123334467899999999999998764 4589999998875
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=270.54 Aligned_cols=219 Identities=20% Similarity=0.197 Sum_probs=184.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++..+++|+++.++++++++++.++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988888775543 35778899999999999999999999
Q ss_pred CC-CeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 219 NK-KINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 219 ~g-~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+| +||++|||||.... ..+.+.+++.+.+++|+.+++.+++.++|+|.+ +.++|+||++
T Consensus 80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-----------------~~~~g~Iv~i 142 (227)
T PRK08862 80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRK-----------------RNKKGVIVNV 142 (227)
T ss_pred hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCceEEEE
Confidence 99 99999999986432 255678899999999999999999999999973 2246899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+. ++...|++||+|+.+|+++|+.|++++|||||+|+||+++|+... . ++.....
T Consensus 143 sS~~~~---------------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~-~----~~~~~~~- 201 (227)
T PRK08862 143 ISHDDH---------------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGEL-D----AVHWAEI- 201 (227)
T ss_pred ecCCCC---------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCcc-C----HHHHHHH-
Confidence 996542 336689999999999999999999999999999999999998321 1 1111110
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEe
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~ 410 (429)
-++++.+..||++ ..++||+.+.
T Consensus 202 ----------~~~~~~~~~~l~~---~~~~tg~~~~ 224 (227)
T PRK08862 202 ----------QDELIRNTEYIVA---NEYFSGRVVE 224 (227)
T ss_pred ----------HHHHHhheeEEEe---cccccceEEe
Confidence 1899999999996 4589998765
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=270.49 Aligned_cols=244 Identities=25% Similarity=0.303 Sum_probs=206.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||+||||++++++|+++|++|++++|+.++.++..+.+.. +.++.++++|+++.++++++++++.+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999888777666543 346888999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|++|||||.... ..+.+.+++++.+++|+.+++.+++.+++.|. +++.++||++|
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 140 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMR------------------GEGGGAIVNVA 140 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 9999999999997532 24568899999999999999999999999997 45668999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chhHHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSWLSTVVL 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~~~~~~ 374 (429)
|..+..+. ++...|+.||++++.+++.++.++++.||++++++||++.|++....... .+.....+.
T Consensus 141 S~~~~~~~------------~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~ 208 (251)
T PRK07231 141 STAGLRPR------------PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFL 208 (251)
T ss_pred ChhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHh
Confidence 98877654 56788999999999999999999999999999999999999987654311 112222334
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+..++.+|+|+|++++++++++ ..+++|+++.+|||..
T Consensus 209 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 209 ATIPLGRLGTPEDIANAALFLASDE-ASWITGVTLVVDGGRC 249 (251)
T ss_pred cCCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCeEEECCCcc
Confidence 4455567789999999999999655 5689999999999854
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=272.64 Aligned_cols=247 Identities=22% Similarity=0.243 Sum_probs=206.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|+++++++.++++++.+
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999998887777776543 23678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||..... .+.+.++++.++++|+.+++.+++++.++|.+ ..+.|+||++|
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~g~iv~~s 146 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLE-----------------HSGGGSVINIS 146 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHh-----------------hcCCeEEEEEc
Confidence 999999999999975432 45678999999999999999999999999973 24568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|++||++++++++.++.|+.+ +|+||+|+||++.|++...... .+.....+..
T Consensus 147 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~e~~~-~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~ 212 (263)
T PRK07814 147 STMGRLAG------------RGFAAYGTAKAALAHYTRLAALDLCP-RIRVNAIAPGSILTSALEVVAA-NDELRAPMEK 212 (263)
T ss_pred cccccCCC------------CCCchhHHHHHHHHHHHHHHHHHHCC-CceEEEEEeCCCcCchhhhccC-CHHHHHHHHh
Confidence 98887654 56789999999999999999999987 6999999999999997654321 1222233333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+..+..+|+|+|++++|++++. ..+++|+.+.++++....
T Consensus 213 ~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~~~~~~~ 254 (263)
T PRK07814 213 ATPLRRLGDPEDIAAAAVYLASPA-GSYLTGKTLEVDGGLTFP 254 (263)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCcc-ccCcCCCEEEECCCccCC
Confidence 345566789999999999999654 678999999999886663
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=302.48 Aligned_cols=243 Identities=26% Similarity=0.351 Sum_probs=204.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
..+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +..+.++++|++++++++++++++.++
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999998887766654 235678899999999999999999999
Q ss_pred CCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC-cEEEE
Q psy12836 219 NKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-SRIIN 293 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~IV~ 293 (429)
++++|+||||||+.. +..+.+.++|++++++|+.+++.++++++|+|. +++. ++||+
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~~iv~ 138 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMI------------------EQGHGAAIVN 138 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCCeEEE
Confidence 999999999999842 225678899999999999999999999999997 3333 49999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|+++|+|+.+|+++|+.|+.++||+||+|+||+++|++...............
T Consensus 139 isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~ 206 (520)
T PRK06484 139 VASGAGLVAL------------PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAV 206 (520)
T ss_pred ECCcccCCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHH
Confidence 9999887764 5678999999999999999999999999999999999999998754321111111222
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...++..+..+|+++|+.++|+++++ ..+++|+.+.++|+...
T Consensus 207 ~~~~~~~~~~~~~~va~~v~~l~~~~-~~~~~G~~~~~~gg~~~ 249 (520)
T PRK06484 207 RSRIPLGRLGRPEEIAEAVFFLASDQ-ASYITGSTLVVDGGWTV 249 (520)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCceEEecCCeec
Confidence 33445566789999999999999765 67899999999988753
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=275.93 Aligned_cols=244 Identities=24% Similarity=0.297 Sum_probs=202.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+. .+...+.+... +.++.++.+|+++.++++++++++
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999998643 44444444322 246888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+.++++|+||||||.... ..+.+.++++.++++|+.+++.+++++++.|. + .++||
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~------------------~--~g~iV 178 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLK------------------Q--GSAII 178 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHh------------------h--CCeEE
Confidence 9999999999999997532 25578899999999999999999999999885 2 37999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. +....|++||+|+++++++++.++.++||+|++|+||++.|++...... +...+.
T Consensus 179 ~isS~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~--~~~~~~ 244 (290)
T PRK06701 179 NTGSITGYEGN------------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD--EEKVSQ 244 (290)
T ss_pred EEecccccCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC--HHHHHH
Confidence 99998887654 4567899999999999999999999999999999999999998654321 122223
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+....+..++.+|+|+|++++|++++. ..+++|+.|.+|||...
T Consensus 245 ~~~~~~~~~~~~~~dva~~~~~ll~~~-~~~~~G~~i~idgg~~~ 288 (290)
T PRK06701 245 FGSNTPMQRPGQPEELAPAYVFLASPD-SSYITGQMLHVNGGVIV 288 (290)
T ss_pred HHhcCCcCCCcCHHHHHHHHHHHcCcc-cCCccCcEEEeCCCccc
Confidence 334445667889999999999999765 67899999999998643
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=271.91 Aligned_cols=239 Identities=25% Similarity=0.285 Sum_probs=195.7
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcC-----------hhHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 139 SARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRD-----------LDKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 139 ~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~-----------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
++++|++|||||++ |||.++|++|+++|++|++++|+ ........+++... +.++.++++|+++.
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~ 79 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY--GVRCEHMEIDLSQP 79 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 57899999999994 99999999999999999999987 22222233333322 24688999999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
++++++++++.+.++++|++|||||.... ..+.+.++++..+++|+.+++++++++.+.|.
T Consensus 80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----------------- 142 (256)
T PRK12748 80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYD----------------- 142 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh-----------------
Confidence 99999999999999999999999997543 24567889999999999999999999999986
Q ss_pred ccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC
Q psy12836 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363 (429)
Q Consensus 284 ~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~ 363 (429)
++..++||++||..+..+. ++...|++||+|+++++++++.|+.+.||+|++|+||.++|++....
T Consensus 143 -~~~~~~iv~~ss~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~- 208 (256)
T PRK12748 143 -GKAGGRIINLTSGQSLGPM------------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEE- 208 (256)
T ss_pred -hcCCeEEEEECCccccCCC------------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChh-
Confidence 4456899999998776543 45678999999999999999999999999999999999999875421
Q ss_pred CCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+....+..+..+|+|+|+.++|++++. ..+++|+++.+|||..
T Consensus 209 -----~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~d~g~~ 255 (256)
T PRK12748 209 -----LKHHLVPKFPQGRVGEPVDAARLIAFLVSEE-AKWITGQVIHSEGGFS 255 (256)
T ss_pred -----HHHhhhccCCCCCCcCHHHHHHHHHHHhCcc-cccccCCEEEecCCcc
Confidence 1122222334456789999999999999654 6789999999999853
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=272.16 Aligned_cols=241 Identities=24% Similarity=0.288 Sum_probs=199.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||+++||||++|||.+++++|+++|++|++++|+..++++..+++. ..++++|++++++++++++++.+.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG-------GLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC-------CcEEEeeCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999877666555431 146789999999999999999999
Q ss_pred CCCeeEEEEccccCCCC----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 219 NKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++++|++|||||...+. .+.+.+++++.+++|+.+++++++.++|.|. +++.|+||++
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~------------------~~~~g~iv~~ 138 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMV------------------RQGKGSIINT 138 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHH------------------HhCCcEEEEE
Confidence 99999999999976432 3457789999999999999999999999997 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+..+.. ++...|++||+++.++++.++.++.++||+|++|+||.++|++........+.......
T Consensus 139 sS~~~~~g~~-----------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~ 207 (255)
T PRK06057 139 ASFVAVMGSA-----------TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRL 207 (255)
T ss_pred cchhhccCCC-----------CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHH
Confidence 9987766531 24668999999999999999999999999999999999999987543221111111222
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+.+++.+|+|+|+++.+++++. ..+++|+.|.+||+..
T Consensus 208 ~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~~~g~~ 248 (255)
T PRK06057 208 VHVPMGRFAEPEEIAAAVAFLASDD-ASFITASTFLVDGGIS 248 (255)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEECCCee
Confidence 3345567899999999999999765 6889999999999854
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=269.49 Aligned_cols=244 Identities=23% Similarity=0.321 Sum_probs=206.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++|++|||||++|||++++++|+++|++|++++|+.++.++..+++... +.++.++++|+++.++++++++.+.+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999998887776666543 2368889999999999999999999999
Q ss_pred CCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|++|||||.... ....+.++++..+++|+.+++++++.+.+.|. +.+.++||++||.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~ii~iss~ 140 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMV------------------ERGAGRIVNIASD 140 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCeEEEEECch
Confidence 999999999997532 24567788999999999999999999999997 4566899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHHHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTVVL 374 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~~~ 374 (429)
++..+. ++..+|+++|+|+++++++++.++.+.||+++.++||.+.|++..... .........+.
T Consensus 141 ~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (250)
T TIGR03206 141 AARVGS------------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFT 208 (250)
T ss_pred hhccCC------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHH
Confidence 887654 557789999999999999999999989999999999999999865432 11122333444
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+.++..+|+|+|++++++++++ ..+++|+.|.+|||..
T Consensus 209 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~g~~ 249 (250)
T TIGR03206 209 RAIPLGRLGQPDDLPGAILFFSSDD-ASFITGQVLSVSGGLT 249 (250)
T ss_pred hcCCccCCcCHHHHHHHHHHHcCcc-cCCCcCcEEEeCCCcc
Confidence 5566677889999999999999764 7899999999999854
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=262.64 Aligned_cols=240 Identities=27% Similarity=0.306 Sum_probs=202.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||.|++|||.||||++++++|+++|..+.++..+.|.. ++..++++..+...+.+++||+++..+++++++++.+
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~-~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~ 79 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENP-EAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA 79 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCH-HHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence 367899999999999999999999999999988888777764 4566788888888999999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.+|.||++||+||+. ++.+|++++++|+.|.++-+..++|+|.+.. ...+|-|||+||.
T Consensus 80 ~fg~iDIlINgAGi~------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~---------------gG~GGiIvNmsSv 138 (261)
T KOG4169|consen 80 TFGTIDILINGAGIL------DDKDWERTINVNLTGVINGTQLALPYMDKKQ---------------GGKGGIIVNMSSV 138 (261)
T ss_pred HhCceEEEEcccccc------cchhHHHhhccchhhhhhhhhhhhhhhhhhc---------------CCCCcEEEEeccc
Confidence 999999999999997 4678999999999999999999999998632 2367899999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--cCCCeEEEEEeCCCccCCcccCCCCCchh--HHHHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSW--LSTVV 373 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el--~~~gIrVn~V~PG~v~T~~~~~~~~~~~~--~~~~~ 373 (429)
.|..+. +-.+.|++||+++.+|+|+||... .+.||++++||||+++|.+.++......+ ..+.+
T Consensus 139 ~GL~P~------------p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~ 206 (261)
T KOG4169|consen 139 AGLDPM------------PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSI 206 (261)
T ss_pred cccCcc------------ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHH
Confidence 998876 567899999999999999988764 56799999999999999998766321111 11223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+.+....+|.++|..++.++..+ .+|+.+.++.+.
T Consensus 207 ~~~l~~~~~q~~~~~a~~~v~aiE~~----~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 207 KEALERAPKQSPACCAINIVNAIEYP----KNGAIWKVDSGS 244 (261)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHhhc----cCCcEEEEecCc
Confidence 33344444789999999999999654 589998888775
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=269.70 Aligned_cols=243 Identities=24% Similarity=0.282 Sum_probs=204.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||++++++|+++|++|++++|+.+.+++..+++... +.++..+.+|+++++++.++++++.+.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999988777777666543 3468889999999999999999999999999
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|+||||||..... .+.+.+++++++++|+.+++++++.+++.|.+ .+..++||++||..+.
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~~~iv~~sS~~~~ 141 (254)
T TIGR02415 79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKK-----------------QGHGGKIINAASIAGH 141 (254)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----------------CCCCeEEEEecchhhc
Confidence 9999999986432 46688999999999999999999999999973 2234899999998887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--------chhHHHH
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--------DSWLSTV 372 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--------~~~~~~~ 372 (429)
.+. +...+|++||++++++++.++.|+.+.||+|++|+||+++|++.+..... ..+....
T Consensus 142 ~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~ 209 (254)
T TIGR02415 142 EGN------------PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEE 209 (254)
T ss_pred CCC------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHH
Confidence 764 56789999999999999999999999999999999999999986543210 0111223
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...++.+++.+|+|+|+++.||++++ ..+++|+++.+|||..+
T Consensus 210 ~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~d~g~~~ 253 (254)
T TIGR02415 210 FSSEIALGRPSEPEDVAGLVSFLASED-SDYITGQSILVDGGMVY 253 (254)
T ss_pred HHhhCCCCCCCCHHHHHHHHHhhcccc-cCCccCcEEEecCCccC
Confidence 334455677899999999999999765 67899999999998643
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=274.94 Aligned_cols=232 Identities=23% Similarity=0.306 Sum_probs=191.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-------HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-------CEKARKEVVLESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-------~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
++++||+++||||++|||+++|+.|+++|++|++++|+.+. +++..+++... +.++.++++|+++.+++++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHH
Confidence 45789999999999999999999999999999999998653 34444555433 2368889999999999999
Q ss_pred HHHHHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 211 FAEEVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+++++.+.++++|+||||||.... ..+.+.+++++++++|+.++++++++++|.|. +++.
T Consensus 80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~------------------~~~~ 141 (273)
T PRK08278 80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLK------------------KSEN 141 (273)
T ss_pred HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHH------------------hcCC
Confidence 999999999999999999997543 35668899999999999999999999999997 4456
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCC-CccCCcccCCCCCch
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRHSSYYDS 367 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG-~v~T~~~~~~~~~~~ 367 (429)
|+||++||..+..+. .+++..+|++||+|+++++++++.|+.++||+||+|+|| +++|++.+.....
T Consensus 142 g~iv~iss~~~~~~~----------~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~~~-- 209 (273)
T PRK08278 142 PHILTLSPPLNLDPK----------WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLLGG-- 209 (273)
T ss_pred CEEEEECCchhcccc----------ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhcccc--
Confidence 899999997654332 014578999999999999999999999999999999999 6899876553211
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEe
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~ 410 (429)
..+..+..+|+++|+.++++++++ ..+++|+++.
T Consensus 210 --------~~~~~~~~~p~~va~~~~~l~~~~-~~~~~G~~~~ 243 (273)
T PRK08278 210 --------DEAMRRSRTPEIMADAAYEILSRP-AREFTGNFLI 243 (273)
T ss_pred --------cccccccCCHHHHHHHHHHHhcCc-cccceeEEEe
Confidence 012235679999999999999765 5689999874
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=270.18 Aligned_cols=248 Identities=27% Similarity=0.328 Sum_probs=205.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||+||||.++|+.|+++|++|++++|+.++++...+++... +.++.+++||++|+++++++++++.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999998887777666543 2367789999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHH-HHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDK-LQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+.++++|++|||||.... ..+.+.++|++++++|+.+++++++.+.+. |. +++.++||+
T Consensus 85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~------------------~~~~~~~v~ 146 (259)
T PRK08213 85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMI------------------PRGYGRIIN 146 (259)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHH------------------hcCCeEEEE
Confidence 999999999999997532 345678899999999999999999999998 65 445689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+... ...+..+|+++|+++++++++++.++.+.||++|+|+||+++|++..... +...+.+
T Consensus 147 ~sS~~~~~~~~~--------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~---~~~~~~~ 215 (259)
T PRK08213 147 VASVAGLGGNPP--------EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTL---ERLGEDL 215 (259)
T ss_pred ECChhhccCCCc--------cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhh---HHHHHHH
Confidence 999877665311 11345789999999999999999999999999999999999999865432 1222233
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+..+..+|+|+|..++++++.. ..+++|+.+.+||+..
T Consensus 216 ~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~~~~~~~ 257 (259)
T PRK08213 216 LAHTPLGRLGDDEDLKGAALLLASDA-SKHITGQILAVDGGVS 257 (259)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCCEEEECCCee
Confidence 44455567789999999999999654 6789999999999864
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=267.54 Aligned_cols=240 Identities=25% Similarity=0.285 Sum_probs=200.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++||||++|||+++|+.|+++|++|+++.|+. ...++..+++... +.++.++++|+++.++++++++++.+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999887754 3445555555432 24688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||.... ..+.+.+++++++++|+.+++.+++.+++.|. ..++||++|
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--------------------~~~~iv~~s 139 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLG--------------------QGGRIINLS 139 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhc--------------------cCcEEEEEe
Confidence 99999999999998643 24567889999999999999999999999885 247999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|+++|++++.++++++.|+.+.||++++|+||+++|++...... +.....+..
T Consensus 140 s~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~ 205 (245)
T PRK12937 140 TSVIALPL------------PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKS--AEQIDQLAG 205 (245)
T ss_pred eccccCCC------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCC--HHHHHHHHh
Confidence 98776543 5678899999999999999999999999999999999999998643221 222333445
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..++.+..+|+|+|+.++|+++++ ..+++|+++.+||+.
T Consensus 206 ~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~~~~g~ 244 (245)
T PRK12937 206 LAPLERLGTPEEIAAAVAFLAGPD-GAWVNGQVLRVNGGF 244 (245)
T ss_pred cCCCCCCCCHHHHHHHHHHHcCcc-ccCccccEEEeCCCC
Confidence 556677889999999999999654 678999999999874
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=267.47 Aligned_cols=241 Identities=23% Similarity=0.337 Sum_probs=203.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||++++++|+++|+.|++.+|+.+++++..+.+ +.++.++.+|+++.++++++++++.+
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999988777655443 13577889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... ...+.++++.++++|+.+++++++.+.+.+. +++.++||++|
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 138 (245)
T PRK12936 77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMM------------------RRRYGRIINIT 138 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHH------------------HhCCCEEEEEC
Confidence 999999999999986433 4567789999999999999999999998886 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. +....|+++|+|+.++++.++.++.+.|+++++|+||+++|++..... +........
T Consensus 139 S~~~~~~~------------~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~ 203 (245)
T PRK12936 139 SVVGVTGN------------PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN---DKQKEAIMG 203 (245)
T ss_pred CHHhCcCC------------CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC---hHHHHHHhc
Confidence 98887764 456789999999999999999999999999999999999999865532 122222333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+..+..+|+++|++++|+++++ ..+++|++|..|+|...
T Consensus 204 ~~~~~~~~~~~~ia~~~~~l~~~~-~~~~~G~~~~~~~g~~~ 244 (245)
T PRK12936 204 AIPMKRMGTGAEVASAVAYLASSE-AAYVTGQTIHVNGGMAM 244 (245)
T ss_pred CCCCCCCcCHHHHHHHHHHHcCcc-ccCcCCCEEEECCCccc
Confidence 456667889999999999999654 56899999999998653
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=268.42 Aligned_cols=234 Identities=23% Similarity=0.269 Sum_probs=196.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++||||++|||+++|+.|+++|++|++++|. .++.+...++++... .++.++++|+++.++++++++++.+.++++|
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~ 78 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGAYY 78 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999999865 455666666665433 3688899999999999999999999999999
Q ss_pred EEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHH-HHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 224 VLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLL-DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 224 ~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||..... .+.+.++++.++++|+.+++++++.++ |.+. +++.|+||++||.++.
T Consensus 79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------------------~~~~~~iv~vsS~~~~ 140 (239)
T TIGR01831 79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIR------------------ARQGGRIITLASVSGV 140 (239)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------hcCCeEEEEEcchhhc
Confidence 999999986533 456789999999999999999999875 4444 3456899999999887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++...|+++|+++.+++++++.|+.++||+||+|+||+++|++.+... + .........|..
T Consensus 141 ~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~-~~~~~~~~~~~~ 204 (239)
T TIGR01831 141 MGN------------RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVE---H-DLDEALKTVPMN 204 (239)
T ss_pred cCC------------CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhh---H-HHHHHHhcCCCC
Confidence 765 557789999999999999999999999999999999999999876543 1 122233445667
Q ss_pred ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 381 FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
+..+|+|+|+.++||++++ ..+++|+.+.+|||.
T Consensus 205 ~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~gg~ 238 (239)
T TIGR01831 205 RMGQPAEVASLAGFLMSDG-ASYVTRQVISVNGGM 238 (239)
T ss_pred CCCCHHHHHHHHHHHcCch-hcCccCCEEEecCCc
Confidence 8899999999999999654 789999999999884
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=268.11 Aligned_cols=244 Identities=26% Similarity=0.324 Sum_probs=203.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||+||||+++|++|+++|++|++++|+.+...+..+++. .+.++..+++|++|+++++++++++.+.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999888777666654 2346889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||..... ...+.++++.++++|+.+++.+++.+++.|+ +.+.++||++||
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~ii~~sS 140 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQ------------------RQGGGSIVNTAS 140 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHH------------------hcCCeEEEEECC
Confidence 99999999999986433 4567899999999999999999999999997 456689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~~~ 373 (429)
..+..+. ++..+|+++|++++.+++.++.|+...||++++++||.+.|++.+.... ..+......
T Consensus 141 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~ 208 (252)
T PRK06138 141 QLALAGG------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREAL 208 (252)
T ss_pred hhhccCC------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHH
Confidence 9887654 5578899999999999999999999999999999999999998654321 011111111
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+...+.+++|+|+.+++++.++ ..+++|+++.++||+.
T Consensus 209 ~~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~~~~g~~ 250 (252)
T PRK06138 209 RARHPMNRFGTAEEVAQAALFLASDE-SSFATGTTLVVDGGWL 250 (252)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEEECCCee
Confidence 11223344678999999999999765 5789999999999864
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=268.56 Aligned_cols=242 Identities=24% Similarity=0.295 Sum_probs=200.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++||||++|||+++|+.|+++|++|++++|+ .+++++..+++........+..+++|++|.++++++++++.+.++++|
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 81 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS 81 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence 7999999999999999999999999999998 666766666665433333466789999999999999999999999999
Q ss_pred EEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 224 VLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 224 ~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
++|||||..... .+.+.+++++++++|+.+++.+++.+++.|+ +.+.++||++||.++..
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~ii~~ss~~~~~ 143 (251)
T PRK07069 82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLR------------------ASQPASIVNISSVAAFK 143 (251)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh------------------hcCCcEEEEecChhhcc
Confidence 999999986432 5567889999999999999999999999998 45668999999998876
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCC--eEEEEEeCCCccCCcccCCCC--CchhHHHHHHhHH
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTG--ITVNAVHPGIVNTDILRHSSY--YDSWLSTVVLKPL 377 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~g--IrVn~V~PG~v~T~~~~~~~~--~~~~~~~~~~~~~ 377 (429)
+. ++...|+++|+++++++++++.|+.+++ |+|++|+||+++|++...... ..+.....+....
T Consensus 144 ~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 211 (251)
T PRK07069 144 AE------------PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV 211 (251)
T ss_pred CC------------CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC
Confidence 54 5677899999999999999999998765 999999999999998754211 1122222333445
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+..++.+|+|+|+.++++++++ ..+++|+.+.+|||...
T Consensus 212 ~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~i~~~~g~~~ 250 (251)
T PRK07069 212 PLGRLGEPDDVAHAVLYLASDE-SRFVTGAELVIDGGICA 250 (251)
T ss_pred CCCCCcCHHHHHHHHHHHcCcc-ccCccCCEEEECCCeec
Confidence 5667889999999999998664 67899999999998653
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=270.12 Aligned_cols=212 Identities=20% Similarity=0.255 Sum_probs=180.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||+++|++|+ +|++|++++|+.+++++..++++..+. ..+.+++||++|.++++++++++.+.+|++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999 599999999999999988888865432 347788999999999999999999999999
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|++|||||..... .+.+.+.+++++++|+.+++++++.++|.|.+ +...|+||++||.++.
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-----------------~~~~g~Iv~isS~~~~ 141 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRA-----------------QTAPAAIVAFSSIAGW 141 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHh-----------------cCCCCEEEEEeccccc
Confidence 9999999986433 34556677888999999999999999999972 2235899999999887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+++|++...... ..
T Consensus 142 ~~~------------~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~~--------------~~ 195 (246)
T PRK05599 142 RAR------------RANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMKP--------------AP 195 (246)
T ss_pred cCC------------cCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCCC--------------CC
Confidence 654 5678899999999999999999999999999999999999998654321 01
Q ss_pred ccCCHHHHHHHHHHHhcCC
Q psy12836 381 FIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~ 399 (429)
...+|+|+|+.+++++..+
T Consensus 196 ~~~~pe~~a~~~~~~~~~~ 214 (246)
T PRK05599 196 MSVYPRDVAAAVVSAITSS 214 (246)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 2358999999999999764
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.61 Aligned_cols=254 Identities=32% Similarity=0.480 Sum_probs=196.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+|+++||||++|||+++|++|+++| ++|++++|+.++++++.+++.. .+..+.++.+|+++.++++++++++.+.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999 9999999999888877776642 23467788999999999999999999889
Q ss_pred CCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 220 KKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+++|++|||||+..+. ...+.++++.++++|+.|++++++.++|.|.+. ..+.|+||++||
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~----------------~~~~g~IV~vsS 143 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNS----------------PNKDKRLIIVGS 143 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhC----------------CCCCCeEEEEec
Confidence 9999999999986432 346889999999999999999999999999731 112589999999
Q ss_pred cccccCCC--------CcccCC-------------CCCCCCCcchhHHHHHHHHHHHHHHHHHhc-CCCeEEEEEeCCCc
Q psy12836 297 VAHKRGTI--------NKEDLN-------------SENSYDPTQAYNQSKLANVLFTRELAKRLE-GTGITVNAVHPGIV 354 (429)
Q Consensus 297 ~~~~~~~~--------~~~~l~-------------~~~~~~~~~~Y~aSKaal~~l~~~la~el~-~~gIrVn~V~PG~v 354 (429)
.++..... +..++. ....+.+..+|++||+|+..+++.|++++. +.||+|++|+||+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v 223 (314)
T TIGR01289 144 ITGNTNTLAGNVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCI 223 (314)
T ss_pred CccccccCCCcCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 98754211 111111 113355678899999999999999999995 46999999999999
Q ss_pred -cCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 355 -NTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 355 -~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.|+|.++......+....+. ........+|++.|+.+++++.++... .+|.||..++.
T Consensus 224 ~~T~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~~~~~-~~g~~~~~~~~ 282 (314)
T TIGR01289 224 ADTGLFREHVPLFRTLFPPFQ-KYITKGYVSEEEAGERLAQVVSDPKLK-KSGVYWSWGNR 282 (314)
T ss_pred cCCcccccccHHHHHHHHHHH-HHHhccccchhhhhhhhHHhhcCcccC-CCceeeecCCc
Confidence 69987653211111111111 111223679999999999999876543 58999976553
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=266.56 Aligned_cols=242 Identities=24% Similarity=0.303 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||++++++|+++|++|++++|+.+..+...+++.... ..+..+.+|+++.++++++++++.+
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999887777766665432 2567889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC-----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 218 ENKKINVLINNAGVSGC-----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~-----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.++++|+||||||.... ..+.+.+++++++++|+.+++++++.+++.|. +.+.|+||
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv 141 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMA------------------KRGGGAIV 141 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------HhCCcEEE
Confidence 99999999999998532 24557789999999999999999999999987 44568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++.. +...|++||++++++++++++++...||++++++||.+.|++...... ......
T Consensus 142 ~~sS~~~~~---------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--~~~~~~ 204 (250)
T PRK07774 142 NQSSTAAWL---------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTP--KEFVAD 204 (250)
T ss_pred EEecccccC---------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCC--HHHHHH
Confidence 999987642 356899999999999999999999999999999999999998765431 223333
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....++..+..+|+|+|+.++++++.+ ..+++|++|.+++|..+
T Consensus 205 ~~~~~~~~~~~~~~d~a~~~~~~~~~~-~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 205 MVKGIPLSRMGTPEDLVGMCLFLLSDE-ASWITGQIFNVDGGQII 248 (250)
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhChh-hhCcCCCEEEECCCeec
Confidence 444455556789999999999999654 35679999999998665
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=268.05 Aligned_cols=230 Identities=23% Similarity=0.226 Sum_probs=189.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|++|+++|++|++++|+.... . ..++..+.+|++++ ++++.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~------~~~~~~~ 64 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------L-----SGNFHFLQLDLSDD------LEPLFDW 64 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------c-----CCcEEEEECChHHH------HHHHHHh
Confidence 57899999999999999999999999999999999975431 0 12577889999887 4445556
Q ss_pred CCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|++|||||... +..+.+.+++++++++|+.+++++++.++|.|. +++.|+||++|
T Consensus 65 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 126 (235)
T PRK06550 65 VPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQML------------------ERKSGIIINMC 126 (235)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 689999999999753 235668899999999999999999999999987 45668999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++...|+++|+++++++++++.|+.++||+||+|+||+++|++...... .....+.+..
T Consensus 127 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~ 193 (235)
T PRK06550 127 SIASFVAG------------GGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE-PGGLADWVAR 193 (235)
T ss_pred ChhhccCC------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC-chHHHHHHhc
Confidence 99887654 4577899999999999999999999999999999999999998653221 1222233334
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+..++.+|+|+|++++|+++++ ..+++|+.+.+|||+.+
T Consensus 194 ~~~~~~~~~~~~~a~~~~~l~s~~-~~~~~g~~~~~~gg~~~ 234 (235)
T PRK06550 194 ETPIKRWAEPEEVAELTLFLASGK-ADYMQGTIVPIDGGWTL 234 (235)
T ss_pred cCCcCCCCCHHHHHHHHHHHcChh-hccCCCcEEEECCceec
Confidence 456677889999999999999655 67899999999999754
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=270.35 Aligned_cols=248 Identities=18% Similarity=0.194 Sum_probs=207.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|++|||||+||||+++|+.|+++|++|++++|+.++.+...+++.......++.++++|++++++++++++++.+
T Consensus 3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999888777766665433234678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++++|++|||||.... ....+.++++.++++|+.+++.+++.+.+.|. +.+.++||++
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~~ 144 (276)
T PRK05875 83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELV------------------RGGGGSFVGI 144 (276)
T ss_pred HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 99999999999997532 34567888999999999999999999999987 4456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|+++|++++.+++.++.++...||++++|+||+++|++....... +.......
T Consensus 145 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-~~~~~~~~ 211 (276)
T PRK05875 145 SSIAASNTH------------RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITES-PELSADYR 211 (276)
T ss_pred echhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccC-HHHHHHHH
Confidence 998876543 45778999999999999999999999999999999999999987543221 11112222
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..+..+|+|+|++++|+++.+ ..+++|+++.+|+|...
T Consensus 212 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~g~~~ 253 (276)
T PRK05875 212 ACTPLPRVGEVEDVANLAMFLLSDA-ASWITGQVINVDGGHML 253 (276)
T ss_pred cCCCCCCCcCHHHHHHHHHHHcCch-hcCcCCCEEEECCCeec
Confidence 3344567789999999999999765 56789999999999775
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=268.11 Aligned_cols=238 Identities=22% Similarity=0.246 Sum_probs=198.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|++|||||++|||++++++|+++|++|++++|+. +.. .+.++.++++|+++.++++++++++.+
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLA 72 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999986 111 123678899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++++|++|||||..... .+.+.++++..+++|+.+++.+++.+.+.|+ +++.|+||++|
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~~s 134 (252)
T PRK08220 73 ETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFR------------------RQRSGAIVTVG 134 (252)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCCEEEEEC
Confidence 999999999999986432 4567899999999999999999999999997 45678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh-------
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW------- 368 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~------- 368 (429)
|..+..+. ++..+|++||++++++++.++.|+++.||+||+|+||++.|++..........
T Consensus 135 s~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~ 202 (252)
T PRK08220 135 SNAAHVPR------------IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAG 202 (252)
T ss_pred CchhccCC------------CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhh
Confidence 98776543 45788999999999999999999999999999999999999986543211100
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+....+..++.+|+|+|++++||+++. ..+++|+.+.+|||..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~i~~~gg~~~ 250 (252)
T PRK08220 203 FPEQFKLGIPLGKIARPQEIANAVLFLASDL-ASHITLQDIVVDGGATL 250 (252)
T ss_pred HHHHHhhcCCCcccCCHHHHHHHHHHHhcch-hcCccCcEEEECCCeec
Confidence 0111222345567889999999999999654 67999999999999654
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=265.90 Aligned_cols=242 Identities=26% Similarity=0.295 Sum_probs=196.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|+++||||++|||.++|+.|+++|++|+++. |+.++++...+++... +.++..++||+++.++++++++++.+.++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999998764 6667776666666443 23688999999999999999999999999
Q ss_pred CeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 221 KINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 221 ~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|++|||||.... ..+.+.++++.++++|+.+++++++.+++.|.... ....++||++||.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---------------~~~~~~ii~~sS~ 144 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDR---------------GGRGGAIVNVSSI 144 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC---------------CCCCcEEEEECch
Confidence 99999999998643 24567889999999999999999999999886321 1235789999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
++..+.+ ....+|++||+++++++++++.++.+.||+|++|+||+++|++...... +..........
T Consensus 145 ~~~~~~~-----------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~ 211 (248)
T PRK06947 145 ASRLGSP-----------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ--PGRAARLGAQT 211 (248)
T ss_pred hhcCCCC-----------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC--HHHHHHHhhcC
Confidence 8876641 1245799999999999999999999999999999999999998653211 11212222334
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
+..+..+|+++|+.++++++++ ..+++|++|.+|||
T Consensus 212 ~~~~~~~~e~va~~~~~l~~~~-~~~~~G~~~~~~gg 247 (248)
T PRK06947 212 PLGRAGEADEVAETIVWLLSDA-ASYVTGALLDVGGG 247 (248)
T ss_pred CCCCCcCHHHHHHHHHHHcCcc-ccCcCCceEeeCCC
Confidence 4456789999999999999765 57899999999987
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=273.21 Aligned_cols=230 Identities=23% Similarity=0.243 Sum_probs=188.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++++|++|.++++++++++.+.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998888877777543 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+... ..+.+.+++++++++|+.|++++++.++|.|.+ ....|+||++||
T Consensus 81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~-----------------~~~~g~iv~isS 143 (275)
T PRK05876 81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLE-----------------QGTGGHVVFTAS 143 (275)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----------------cCCCCEEEEeCC
Confidence 9999999999998643 356788999999999999999999999999973 223689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh--HH---H
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW--LS---T 371 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~--~~---~ 371 (429)
.++..+. ++...|++||+|+.+|+++|+.|++++||+|++|+||+++|++..+....... .. .
T Consensus 144 ~~~~~~~------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 211 (275)
T PRK05876 144 FAGLVPN------------AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTT 211 (275)
T ss_pred hhhccCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccccccc
Confidence 9887664 56789999999999999999999999999999999999999986543110000 00 0
Q ss_pred HHHhHHh-hhccCCHHHHHHHHHHHhcCC
Q psy12836 372 VVLKPLV-WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 372 ~~~~~~~-~~~~~~peevA~~iv~l~~~~ 399 (429)
......+ .....+|+|+|+.++..+..+
T Consensus 212 ~~~~~~~~~~~~~~~~dva~~~~~ai~~~ 240 (275)
T PRK05876 212 GSPGPLPLQDDNLGVDDIAQLTADAILAN 240 (275)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcC
Confidence 0001111 123569999999999988543
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=270.49 Aligned_cols=246 Identities=17% Similarity=0.157 Sum_probs=188.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHH----HHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESI----RAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv----~~~~~~i~~ 217 (429)
++++||||++|||+++|++|+++|++|++++| +.++++...+++....+ .++.++.+|++|.+++ +++++++.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRP-NSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccC-CceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999865 45667666666643322 3566789999999865 556666667
Q ss_pred hCCCeeEEEEccccCCCCC--CCCH-----------HHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 218 ENKKINVLINNAGVSGCRK--MLTE-----------EKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~--~~~~-----------~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
.++++|+||||||...+.. +.+. +++++++++|+.+++++++.++|.|.......
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~------------ 148 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQ------------ 148 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccc------------
Confidence 8899999999999754321 1121 35889999999999999999999986321100
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
....++||+++|..+..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||++.|+.. ..
T Consensus 149 ~~~~~~iv~~~s~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~--~~- 213 (267)
T TIGR02685 149 RSTNLSIVNLCDAMTDQPL------------LGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDA--MP- 213 (267)
T ss_pred CCCCeEEEEehhhhccCCC------------cccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccc--cc-
Confidence 1235789999998776543 56789999999999999999999999999999999999877632 11
Q ss_pred CchhHHHHHHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 365 YDSWLSTVVLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
....+......+.. +..+|+|+|+.++|+++.+ ..+++|+.+.+|||....+
T Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~v~gg~~~~~ 266 (267)
T TIGR02685 214 --FEVQEDYRRKVPLGQREASAEQIADVVIFLVSPK-AKYITGTCIKVDGGLSLTR 266 (267)
T ss_pred --hhHHHHHHHhCCCCcCCCCHHHHHHHHHHHhCcc-cCCcccceEEECCceeccC
Confidence 11112222233332 5689999999999999654 7889999999999986643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=263.15 Aligned_cols=240 Identities=28% Similarity=0.388 Sum_probs=198.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++||||++|||.++|++|+++|++|+++.+ +.+..++..+++... +.++.++++|+++++++.++++++.+
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999987654 556666555555432 23688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.+++++.+++|+.+++++++.++|.|. +...++||++|
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 142 (247)
T PRK12935 81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYIT------------------EAEEGRIISIS 142 (247)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEEc
Confidence 999999999999986543 4457789999999999999999999999997 44568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|++||+|++++++.++.|+.+.||++++|+||.++|++..... .........
T Consensus 143 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~---~~~~~~~~~ 207 (247)
T PRK12935 143 SIIGQAGG------------FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVP---EEVRQKIVA 207 (247)
T ss_pred chhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhcc---HHHHHHHHH
Confidence 98877654 457789999999999999999999999999999999999999865432 112222223
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+...+..|+|+|+++++++... .+++|+.+.++++.
T Consensus 208 ~~~~~~~~~~edva~~~~~~~~~~--~~~~g~~~~i~~g~ 245 (247)
T PRK12935 208 KIPKKRFGQADEIAKGVVYLCRDG--AYITGQQLNINGGL 245 (247)
T ss_pred hCCCCCCcCHHHHHHHHHHHcCcc--cCccCCEEEeCCCc
Confidence 344456789999999999999543 47899999999985
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=266.43 Aligned_cols=246 Identities=23% Similarity=0.284 Sum_probs=202.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||++++++|+++|++|++++|+.++.++..+++... +.++.++++|+++.++++++++++.+.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998888887777543 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||..... ...+.++++..+++|+.+++.+++.+++.|.+ +.+.++||++||
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~-----------------~~~~~~iv~~ss 144 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYK-----------------DDRGGVVIYMGS 144 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----------------hcCCcEEEEEcc
Confidence 99999999999986433 45577889999999999999999999999931 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--------chh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--------DSW 368 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--------~~~ 368 (429)
..+..+. ++...|+++|++++++++.++.++.+.||++|+|+||.+.|++.+..... .+.
T Consensus 145 ~~~~~~~------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~ 212 (262)
T PRK13394 145 VHSHEAS------------PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEE 212 (262)
T ss_pred hhhcCCC------------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHH
Confidence 8776553 45678999999999999999999999999999999999999975432110 001
Q ss_pred HHH-HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LST-VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~-~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
... .+....+...+.+++|+|++++++++.+ ...++|++|.+|+|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~-~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 213 VVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFP-SAALTGQSFVVSHGWF 260 (262)
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHcCcc-ccCCcCCEEeeCCcee
Confidence 111 1111223356789999999999999765 4678999999999864
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=263.28 Aligned_cols=212 Identities=22% Similarity=0.170 Sum_probs=176.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++||||++|||+++|+.|+++|++|++++|+.+++++..+++ .+..+++|+++.++++++++++.+ ++|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~---~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARGLFPH---HLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHHHHhh---cCc
Confidence 4899999999999999999999999999999988877665543 245678999999999999888753 699
Q ss_pred EEEEccccCCC---C--CCC--CHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 224 VLINNAGVSGC---R--KML--TEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 224 ~lI~nAG~~~~---~--~~~--~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|||||.... . ... +.++|++++++|+.+++++++.++|.|+ + .|+||++||
T Consensus 72 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~--~g~Iv~isS 131 (223)
T PRK05884 72 TIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLR------------------S--GGSIISVVP 131 (223)
T ss_pred EEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------c--CCeEEEEec
Confidence 99999985321 1 011 4688999999999999999999999996 2 489999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.+. +...+|++||+|+.+|+++++.|++++||+||+|+||+++|++.+... .
T Consensus 132 ~~~----------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~~------------~ 183 (223)
T PRK05884 132 ENP----------------PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGLS------------R 183 (223)
T ss_pred CCC----------------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhcc------------C
Confidence 651 335689999999999999999999999999999999999998753221 0
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.| ..+|+|+|+.++||++++ ..+++|+.+.+|||...
T Consensus 184 ~p---~~~~~~ia~~~~~l~s~~-~~~v~G~~i~vdgg~~~ 220 (223)
T PRK05884 184 TP---PPVAAEIARLALFLTTPA-ARHITGQTLHVSHGALA 220 (223)
T ss_pred CC---CCCHHHHHHHHHHHcCch-hhccCCcEEEeCCCeec
Confidence 11 238999999999999654 78999999999999754
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=267.62 Aligned_cols=244 Identities=20% Similarity=0.256 Sum_probs=189.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh----hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL----DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~----~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
+.+++||+++||||++|||+++|++|+++|++|++++++. +..++..+++... +.++.++++|+++++++++++
T Consensus 3 ~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 3 DHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHH
Confidence 3457899999999999999999999999999977776533 3344444444332 236788899999999999999
Q ss_pred HHHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 213 EEVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++.+.++++|++|||||.... ..+.+.+++++++++|+.+++++++.+.|+|. . .|+
T Consensus 81 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~--~~~ 140 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLN------------------D--NGK 140 (257)
T ss_pred HHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhc------------------c--CCC
Confidence 9999999999999999998543 24567889999999999999999999999885 2 367
Q ss_pred EEEE-cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 291 IINV-SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 291 IV~v-SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
++++ ||..+... +....|++||+|+++|+++++.|+.++||+||+|+||++.|++...........
T Consensus 141 iv~~~ss~~~~~~-------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~ 207 (257)
T PRK12744 141 IVTLVTSLLGAFT-------------PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVA 207 (257)
T ss_pred EEEEecchhcccC-------------CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhh
Confidence 7776 55444221 456789999999999999999999999999999999999999764322111000
Q ss_pred H-H--HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 370 S-T--VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 370 ~-~--~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. . ....+....++.+|+|+|++++||+++ ..+++|+.+.+|||...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~~g~~~~~~gg~~~ 256 (257)
T PRK12744 208 YHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD--GWWITGQTILINGGYTT 256 (257)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHhhcc--cceeecceEeecCCccC
Confidence 0 0 001122122678999999999999974 46889999999998654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.87 Aligned_cols=245 Identities=27% Similarity=0.288 Sum_probs=200.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 3 ~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 3 LKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999888888776433 468889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|++|||||.... ..+.+.+++++.+++|+.|++++++.++++|. +++.|+||++
T Consensus 81 ~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~------------------~~~~g~iV~i 142 (334)
T PRK07109 81 EELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMR------------------PRDRGAIIQV 142 (334)
T ss_pred HHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEe
Confidence 999999999999997533 35678899999999999999999999999998 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG--TGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
||..+..+. +...+|++||+++++|+++++.|+.. .+|+|++|+||.++|++...... .. .
T Consensus 143 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~---~~-~- 205 (334)
T PRK07109 143 GSALAYRSI------------PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARS---RL-P- 205 (334)
T ss_pred CChhhccCC------------CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhh---hc-c-
Confidence 999887654 55788999999999999999999975 47999999999999997653211 00 0
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcc-cCCceEEecCccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLE-NVSGKYFACYDRYEARV 419 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~-~vtG~~i~~~gg~~~~~ 419 (429)
....+.....+|+++|+++++++.++..+ +++|.......+....+
T Consensus 206 -~~~~~~~~~~~pe~vA~~i~~~~~~~~~~~~vg~~~~~~~~~~~~~P 252 (334)
T PRK07109 206 -VEPQPVPPIYQPEVVADAILYAAEHPRRELWVGGPAKAAILGNRLAP 252 (334)
T ss_pred -ccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCcHHHHHHHHHHhCc
Confidence 01122345679999999999999876333 34555544444444433
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=261.72 Aligned_cols=240 Identities=25% Similarity=0.315 Sum_probs=201.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++... +.++..+++|+++.++++++++.+.+.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998888777776543 346788999999999999999999988
Q ss_pred CCCeeEEEEccccCCCC-----------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 219 NKKINVLINNAGVSGCR-----------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~-----------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++|++|||||..... ...+.++++.++++|+.+++.+++.+.+.|.+ ...
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~-----------------~~~ 142 (253)
T PRK08217 80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIE-----------------SGS 142 (253)
T ss_pred cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh-----------------cCC
Confidence 89999999999975421 34577899999999999999999999999873 224
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
.++||++||... .+. ++..+|++||+|+++++++|+.++.++||++++++||.+.|++..... +
T Consensus 143 ~~~iv~~ss~~~-~~~------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~---~ 206 (253)
T PRK08217 143 KGVIINISSIAR-AGN------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMK---P 206 (253)
T ss_pred CeEEEEEccccc-cCC------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC---H
Confidence 578999998643 332 457889999999999999999999999999999999999999875543 2
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.....+....+..+..+|+|+|+++.+++.+ .+++|+.|.++|+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~---~~~~g~~~~~~gg~~ 252 (253)
T PRK08217 207 EALERLEKMIPVGRLGEPEEIAHTVRFIIEN---DYVTGRVLEIDGGLR 252 (253)
T ss_pred HHHHHHHhcCCcCCCcCHHHHHHHHHHHHcC---CCcCCcEEEeCCCcc
Confidence 2333333444556778999999999999953 478999999999875
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=271.83 Aligned_cols=253 Identities=30% Similarity=0.447 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++++|++|.++++++++++.+.
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999888877776432 346788999999999999999998888
Q ss_pred CCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|+||||||+..+. ...+.++++.++++|+.|++++++.++|.|++. ..+.+|||++|
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----------------~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKS----------------PAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhC----------------CCCCceEEEEc
Confidence 88999999999986432 356889999999999999999999999999731 11236999999
Q ss_pred CcccccCCC----------CcccCC-------------CCCCCCCcchhHHHHHHHHHHHHHHHHHhc-CCCeEEEEEeC
Q psy12836 296 SVAHKRGTI----------NKEDLN-------------SENSYDPTQAYNQSKLANVLFTRELAKRLE-GTGITVNAVHP 351 (429)
Q Consensus 296 S~~~~~~~~----------~~~~l~-------------~~~~~~~~~~Y~aSKaal~~l~~~la~el~-~~gIrVn~V~P 351 (429)
|.++..+.. ...++. ....+.+..+|+.||+|+..+++.+++++. ..||+|++|+|
T Consensus 145 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~P 224 (322)
T PRK07453 145 TVTANPKELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYP 224 (322)
T ss_pred ccccCccccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecC
Confidence 987653210 000000 112356678999999999999999999995 47999999999
Q ss_pred CCc-cCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 352 GIV-NTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 352 G~v-~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
|.| .|++.++.......+...+. ........++++.|+.+++++.++.. ..+|.||..
T Consensus 225 G~v~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~y~~~ 283 (322)
T PRK07453 225 GCVADTPLFRNTPPLFQKLFPWFQ-KNITGGYVSQELAGERVAQVVADPEF-AQSGVHWSW 283 (322)
T ss_pred CcccCCcccccCCHHHHHHHHHHH-HHHhhceecHHHHhhHHHHhhcCccc-CCCCceeec
Confidence 999 59987664311111111111 11112346899999999999988765 469999974
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=262.56 Aligned_cols=245 Identities=26% Similarity=0.320 Sum_probs=203.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++... +.++..+.||+++.++++++++++.+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999998888777776543 2468889999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|+||||||..... .+.+.++++..+++|+.+++.+++.+++.|. +++.++||++||.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~iss~ 141 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMK------------------AQGGGRIINMASV 141 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHH------------------hcCCeEEEEEcch
Confidence 9999999999976443 4567789999999999999999999999998 4567899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---------Cchh
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---------YDSW 368 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---------~~~~ 368 (429)
.+..+. ++...|+++|++++++++.++.|+.+.||+|++++||++.|++...... ....
T Consensus 142 ~~~~~~------------~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~ 209 (258)
T PRK12429 142 HGLVGS------------AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEV 209 (258)
T ss_pred hhccCC------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHH
Confidence 887664 5678999999999999999999999999999999999999987643210 0001
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+....+...+.+++|+|+++++++.++ ...++|+++..+||++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~~~~g~~~ 257 (258)
T PRK12429 210 LEDVLLPLVPQKRFTTVEEIADYALFLASFA-AKGVTGQAWVVDGGWTA 257 (258)
T ss_pred HHHHHhccCCccccCCHHHHHHHHHHHcCcc-ccCccCCeEEeCCCEec
Confidence 1111111223356789999999999999665 45789999999999764
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=273.57 Aligned_cols=214 Identities=23% Similarity=0.242 Sum_probs=175.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++..+.+|+++ ++.+.++++.+..
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~~~ 128 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKETI 128 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999988888766555578888999985 2333344444443
Q ss_pred C--CeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 220 K--KINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 220 g--~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+ ++|++|||||+..+ ..+.+.+++++++++|+.|++.+++.++|.|. +++.|+||+
T Consensus 129 ~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~------------------~~~~g~IV~ 190 (320)
T PLN02780 129 EGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGML------------------KRKKGAIIN 190 (320)
T ss_pred cCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 4 56799999998642 24678899999999999999999999999998 556799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..... .+...+|++||+|+++|+++|+.|++++||+|++|+||+|+|+|......
T Consensus 191 iSS~a~~~~~~----------~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~~~--------- 251 (320)
T PLN02780 191 IGSGAAIVIPS----------DPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRRS--------- 251 (320)
T ss_pred EechhhccCCC----------CccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccccCC---------
Confidence 99988854110 14578999999999999999999999999999999999999998652110
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASL 397 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~ 397 (429)
. ....+|+++|+.++..+.
T Consensus 252 --~---~~~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 252 --S---FLVPSSDGYARAALRWVG 270 (320)
T ss_pred --C---CCCCCHHHHHHHHHHHhC
Confidence 0 114589999999999984
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=261.13 Aligned_cols=241 Identities=25% Similarity=0.328 Sum_probs=195.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+|++|||||++|||.++|++|+++|++|+++. |+.++.++..+++... +.++.++++|++|.++++++++++.+.++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999999998886 4555555555555432 23577899999999999999999999999
Q ss_pred CeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 221 KINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+||||||..... .+.+.++++.++++|+.+++++++.+++.|.+.. ....|+||++||.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---------------~~~~g~iv~~sS~ 144 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRH---------------GGRGGAIVNVSSM 144 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---------------CCCCeEEEEECch
Confidence 999999999986432 4567889999999999999999999999986321 1235799999999
Q ss_pred ccccCCCCcccCCCCCCCCC-cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 298 AHKRGTINKEDLNSENSYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~-~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
++..+. ++ ...|++||+++++|++.++.|+.++||+|++|+||.+.|++..... .+.....+...
T Consensus 145 ~~~~~~------------~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~~~~~~~~ 210 (248)
T PRK06123 145 AARLGS------------PGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGRVDRVKAG 210 (248)
T ss_pred hhcCCC------------CCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHHHHHHHhc
Confidence 887664 22 3579999999999999999999999999999999999999754322 12222233344
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.|..+..+|+|+|+++++++++. ..+++|+++.++|+
T Consensus 211 ~p~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~~~gg 247 (248)
T PRK06123 211 IPMGRGGTAEEVARAILWLLSDE-ASYTTGTFIDVSGG 247 (248)
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc-ccCccCCEEeecCC
Confidence 56667789999999999999764 56889999999886
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=267.46 Aligned_cols=221 Identities=29% Similarity=0.313 Sum_probs=182.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++|+++||||+||||+++|++|+++|++|++++|+.+++++... ..+.++++|++|.++++++++++.+.+
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999999877654321 136778999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|+||||||..... .+.+.++++.++++|+.+++.+++.++|.|+ +.+.|+||++||.
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~------------------~~~~g~iv~isS~ 134 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMR------------------AQRSGRIINISSM 134 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHH------------------hcCCCEEEEEcch
Confidence 9999999999986433 5668899999999999999999999999997 4567899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------Cch--h
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------YDS--W 368 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------~~~--~ 368 (429)
.+..+. +....|++||+++++|+++++.|+.+.||+|++|+||+++|++...... ..+ .
T Consensus 135 ~~~~~~------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 202 (273)
T PRK06182 135 GGKIYT------------PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAE 202 (273)
T ss_pred hhcCCC------------CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHH
Confidence 776543 4466899999999999999999999999999999999999997532110 000 0
Q ss_pred ----HHHHHHhHHhhhccCCHHHHHHHHHHHhcC
Q psy12836 369 ----LSTVVLKPLVWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 369 ----~~~~~~~~~~~~~~~~peevA~~iv~l~~~ 398 (429)
..+.+....+..++.+|+++|++++++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~ 236 (273)
T PRK06182 203 QAQAVAASMRSTYGSGRLSDPSVIADAISKAVTA 236 (273)
T ss_pred HHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhC
Confidence 111222223445778999999999999975
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=260.16 Aligned_cols=239 Identities=25% Similarity=0.325 Sum_probs=198.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|+++||||++|||+++|+.|+++|++|++++|+.. ...+....... ...++.++++|+++.++++++++++.+.+++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999854 22222222211 2346888999999999999999999999999
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||.... ..+.+.++++.++++|+.+++++++.+++.|+ +.+.++||++||..+
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~iss~~~ 142 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMC------------------EQGYGRIINISSVNG 142 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HhCCeEEEEECChhh
Confidence 9999999998643 25568899999999999999999999999997 446789999999887
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++...|++||+|++++++.++.++.+.||++++++||.+.|++.+... +.....+....+.
T Consensus 143 ~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~~~~~~~~~~~ 207 (245)
T PRK12824 143 LKGQ------------FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---PEVLQSIVNQIPM 207 (245)
T ss_pred ccCC------------CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---HHHHHHHHhcCCC
Confidence 7554 567789999999999999999999999999999999999999866543 2222333444555
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+++|+|+.++++++++ ..+++|+.+.+|||...
T Consensus 208 ~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~~~~g~~~ 244 (245)
T PRK12824 208 KRLGTPEEIAAAVAFLVSEA-AGFITGETISINGGLYM 244 (245)
T ss_pred CCCCCHHHHHHHHHHHcCcc-ccCccCcEEEECCCeec
Confidence 66789999999999999654 67899999999999743
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=259.30 Aligned_cols=231 Identities=22% Similarity=0.211 Sum_probs=192.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC--HHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS--QESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~--~~sv~~~~~~i 215 (429)
.+|+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... +..+..+++|+++ .+++.++++++
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccchHHHHHHHHHH
Confidence 45789999999999999999999999999999999999988887777765432 2346678899986 57899999999
Q ss_pred HHhC-CCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 216 KKEN-KKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 216 ~~~~-g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
.+.+ +++|++|||||... +..+.+.+++++++++|+.|++++++.++|.|. +.+.++|
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~i 142 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLK------------------QSPDASV 142 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHH------------------hCCCCEE
Confidence 8888 89999999999753 335678899999999999999999999999987 4456899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCC-CeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGT-GITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~-gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
|++||..+..+. ++..+|++||+|++++++.++.|+.++ +|+||+|+||+|+|++....... . .
T Consensus 143 v~~ss~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~~-~-~- 207 (239)
T PRK08703 143 IFVGESHGETPK------------AYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPG-E-A- 207 (239)
T ss_pred EEEeccccccCC------------CCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCCC-C-C-
Confidence 999998776553 456789999999999999999999887 69999999999999986543210 0 0
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
.....++++++..++|+++ ++..++||+.+.+
T Consensus 208 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 239 (239)
T PRK08703 208 --------KSERKSYGDVLPAFVWWAS-AESKGRSGEIVYL 239 (239)
T ss_pred --------ccccCCHHHHHHHHHHHhC-ccccCcCCeEeeC
Confidence 0124699999999999996 4578999998753
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=258.05 Aligned_cols=238 Identities=26% Similarity=0.337 Sum_probs=199.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|++|||||++|||+++|++|+++|++|++++| +.+..++..+++... +.++.++.+|++++++++++++++.+.+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999988 665555554444332 236888999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||..... ...+.+++++.+++|+.+++.+++.+++.|+ +.+.++||++||..+
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~iss~~~ 140 (242)
T TIGR01829 79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMR------------------ERGWGRIINISSVNG 140 (242)
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEEcchhh
Confidence 99999999976432 4567889999999999999999999999997 445689999999877
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. .+...|+++|+++..+++.++.++.+.||++++++||++.|++..... +.....+....+.
T Consensus 141 ~~~~------------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~~~ 205 (242)
T TIGR01829 141 QKGQ------------FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMR---EDVLNSIVAQIPV 205 (242)
T ss_pred cCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccc---hHHHHHHHhcCCC
Confidence 6654 457789999999999999999999999999999999999999875432 2222233334555
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.++.+|+++|+.+.|+++++ ..+++|+.+.++||..
T Consensus 206 ~~~~~~~~~a~~~~~l~~~~-~~~~~G~~~~~~gg~~ 241 (242)
T TIGR01829 206 GRLGRPEEIAAAVAFLASEE-AGYITGATLSINGGLY 241 (242)
T ss_pred CCCcCHHHHHHHHHHHcCch-hcCccCCEEEecCCcc
Confidence 67889999999999999765 5689999999999864
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=260.46 Aligned_cols=243 Identities=23% Similarity=0.211 Sum_probs=195.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.....+|+++||||++|||+++|++|+++|++|+++++ +.+.++.+.+++... +.++.++.+|++|.++++++++++
T Consensus 4 ~~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 4 MSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999999988766 455566666665433 236888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||.... ..+.+.+++++++++|+.+++++++.+.+.|. +...++||+
T Consensus 82 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~ 143 (258)
T PRK09134 82 SAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALP------------------ADARGLVVN 143 (258)
T ss_pred HHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCceEEE
Confidence 9999999999999997643 25568899999999999999999999999887 445689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
++|..+..+. +...+|++||++++++++.++.++.+. |+||+|+||++.|+..... ..+ ...
T Consensus 144 ~~s~~~~~~~------------p~~~~Y~~sK~a~~~~~~~la~~~~~~-i~v~~i~PG~v~t~~~~~~----~~~-~~~ 205 (258)
T PRK09134 144 MIDQRVWNLN------------PDFLSYTLSKAALWTATRTLAQALAPR-IRVNAIGPGPTLPSGRQSP----EDF-ARQ 205 (258)
T ss_pred ECchhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecccccCCcccCh----HHH-HHH
Confidence 9987654432 445689999999999999999999775 9999999999988642211 111 222
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
....+.++..+|+|+|++++++++.+ +++|+.+.++||......
T Consensus 206 ~~~~~~~~~~~~~d~a~~~~~~~~~~---~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 206 HAATPLGRGSTPEEIAAAVRYLLDAP---SVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhcCC---CcCCCEEEECCCeecccc
Confidence 23344566789999999999999643 579999999998755443
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=295.32 Aligned_cols=253 Identities=22% Similarity=0.260 Sum_probs=207.2
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+...+++||++|||||++|||+++|++|+++|++|++++|+.+.++...+++........+..+++|++|.+++++++++
T Consensus 407 ~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~ 486 (676)
T TIGR02632 407 PKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFAD 486 (676)
T ss_pred CCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 44667899999999999999999999999999999999999988887777765444334677899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+.+|++|+||||||.... ..+.+.++|+..+++|+.+++++++.+++.|++ ....++||
T Consensus 487 i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~-----------------~~~~g~IV 549 (676)
T TIGR02632 487 VALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMRE-----------------QGLGGNIV 549 (676)
T ss_pred HHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cCCCCEEE
Confidence 99999999999999997643 255678999999999999999999999999973 22357999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccC--CcccCCCC------
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT--DILRHSSY------ 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T--~~~~~~~~------ 364 (429)
++||..+..+. ++..+|++||+++++++++++.|+++.||+||+|+||.|.| .+......
T Consensus 550 ~iSS~~a~~~~------------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~ 617 (676)
T TIGR02632 550 FIASKNAVYAG------------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAA 617 (676)
T ss_pred EEeChhhcCCC------------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhc
Confidence 99998887664 56789999999999999999999999999999999998864 33221110
Q ss_pred ---CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 365 ---YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.............++++..+|+|+|++++|++++. ..++||+++.+|||...
T Consensus 618 ~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~~-~~~~TG~~i~vDGG~~~ 672 (676)
T TIGR02632 618 YGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASSK-SEKTTGCIITVDGGVPA 672 (676)
T ss_pred ccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCc-ccCCcCcEEEECCCchh
Confidence 01111122233345567789999999999998654 57899999999999654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=264.52 Aligned_cols=214 Identities=30% Similarity=0.342 Sum_probs=186.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||+||||+++|++|+++|++|++++|+.+++++..+++. ++.++.+|++|+++++++++++.+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999988877665542 4677899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||+.... .+.+.+++++++++|+.|++.+++.++|.|. +++.|+||++||
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS 137 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMV------------------PRGRGHVVNVAS 137 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hCCCCEEEEEcC
Confidence 99999999999986433 4567889999999999999999999999998 556789999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+++.+|+++++.|+.+.||+|++|+||++.|++.......
T Consensus 138 ~~~~~~~------------~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~~~~----------- 194 (273)
T PRK07825 138 LAGKIPV------------PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTGGA----------- 194 (273)
T ss_pred ccccCCC------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcccccc-----------
Confidence 9887664 56789999999999999999999999999999999999999986543210
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
......+|+|+|+.++.++.++.
T Consensus 195 -~~~~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 195 -KGFKNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred -cCCCCCCHHHHHHHHHHHHhCCC
Confidence 01235799999999999997654
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=259.73 Aligned_cols=246 Identities=22% Similarity=0.248 Sum_probs=202.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++|+++||||++|||++++++|+++|++ |++++|+.++.....+++... +.++.++.+|+++++++.++++.+.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999 999999988777666666332 34678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.++++.++++|+.+++.+++.+++.|.+ ....|+||++|
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~g~iv~~s 143 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRR-----------------RKAEGTIVNIG 143 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCCEEEEEC
Confidence 999999999999986433 45688999999999999999999999999973 22358999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC----CCchhHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS----YYDSWLST 371 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~----~~~~~~~~ 371 (429)
|.++..+. ++...|+++|+++++++++++.|+...||+|++|+||++.|++..... .....+..
T Consensus 144 s~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~ 211 (260)
T PRK06198 144 SMSAHGGQ------------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLE 211 (260)
T ss_pred CcccccCC------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHH
Confidence 98876553 456789999999999999999999999999999999999998743210 00111112
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
......+..+..+++|+|+.++++++++ ..+++|+++.+|++..
T Consensus 212 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~G~~~~~~~~~~ 255 (260)
T PRK06198 212 KAAATQPFGRLLDPDEVARAVAFLLSDE-SGLMTGSVIDFDQSVW 255 (260)
T ss_pred HHhccCCccCCcCHHHHHHHHHHHcChh-hCCccCceEeECCccc
Confidence 2223344566789999999999999765 6789999999998754
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=259.11 Aligned_cols=241 Identities=21% Similarity=0.255 Sum_probs=199.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||++|||+++|++|+++|++|++++|+.++++...+++. +.++..+++|+++.+++..+++++.+++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGP 77 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999988777666552 236788999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||..... ...+.++++..+++|+.+++.+.+++.+.+. +++.++||++||..+
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~~sS~~~ 139 (257)
T PRK07074 78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGML------------------KRSRGAVVNIGSVNG 139 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCeEEEEEcchhh
Confidence 99999999986433 4567889999999999999999999999987 445689999999765
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
... .+...|+++|+++++++++++.+++++||+|++++||++.|++........+.+........+.
T Consensus 140 ~~~-------------~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
T PRK07074 140 MAA-------------LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPL 206 (257)
T ss_pred cCC-------------CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCC
Confidence 422 2356899999999999999999999999999999999999998644322122232323233344
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.+++|+|+++++|++++ ..+++|+++.+|+|...+
T Consensus 207 ~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~~~~g~~~~ 244 (257)
T PRK07074 207 QDFATPDDVANAVLFLASPA-ARAITGVCLPVDGGLTAG 244 (257)
T ss_pred CCCCCHHHHHHHHHHHcCch-hcCcCCcEEEeCCCcCcC
Confidence 66789999999999999654 578899999999987653
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=243.91 Aligned_cols=246 Identities=26% Similarity=0.329 Sum_probs=209.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++.+|-+++||||.||+|+++|+.|+++|+.|++.+-..++.++.++++ +.++.+.++|++++++++.++...+
T Consensus 4 ~rs~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala~ak 78 (260)
T KOG1199|consen 4 LRSTKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALAKAK 78 (260)
T ss_pred hhhhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999988888887 3478999999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 217 KENKKINVLINNAGVSGCR--------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
.+||++|.+|||||+.... ...+.|++++.+++|++|+|+++++....|-++.... ....
T Consensus 79 ~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq------------~gqr 146 (260)
T KOG1199|consen 79 AKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQ------------NGQR 146 (260)
T ss_pred hhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCC------------CCcc
Confidence 9999999999999985322 3347799999999999999999999999887653321 3356
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|.||+..|++++-+. .++.+|++||.++.+|+--++++++..|||+++|.||..+||+....++ .
T Consensus 147 gviintasvaafdgq------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllsslpe---k 211 (260)
T KOG1199|consen 147 GVIINTASVAAFDGQ------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSSLPE---K 211 (260)
T ss_pred eEEEeeceeeeecCc------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhhhhH---H
Confidence 899999999998876 5789999999999999999999999999999999999999999887652 2
Q ss_pred HHHHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+.+|. .|++.|.|.|..+-....+| +++|+.|..||....
T Consensus 212 v~~fla~~ipfpsrlg~p~eyahlvqaiienp---~lngevir~dgalrm 258 (260)
T KOG1199|consen 212 VKSFLAQLIPFPSRLGHPHEYAHLVQAIIENP---YLNGEVIRFDGALRM 258 (260)
T ss_pred HHHHHHHhCCCchhcCChHHHHHHHHHHHhCc---ccCCeEEEecceecC
Confidence 22222233332 47899999999999998665 789999999987654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=255.83 Aligned_cols=239 Identities=29% Similarity=0.299 Sum_probs=196.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||+++||||++|||+++++.|+++|++|++++|+.+++++..++. ...++.+|+++.++++++++.
T Consensus 4 ~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~-- 74 (245)
T PRK07060 4 AFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAA-- 74 (245)
T ss_pred ccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHH--
Confidence 45688999999999999999999999999999999999987766554432 245678999999988887765
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+++|++|||||..... .+.+.+++++.+++|+.+++.+++.+.+.+.+ +...++||++
T Consensus 75 --~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~~~iv~~ 135 (245)
T PRK07060 75 --AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIA-----------------AGRGGSIVNV 135 (245)
T ss_pred --hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------cCCCcEEEEE
Confidence 47899999999986433 44678899999999999999999999998862 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++...|++||++++.++++++.++.+.||++++++||++.|++.+.... .+.....+.
T Consensus 136 sS~~~~~~~------------~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~-~~~~~~~~~ 202 (245)
T PRK07060 136 SSQAALVGL------------PDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWS-DPQKSGPML 202 (245)
T ss_pred ccHHHcCCC------------CCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhcc-CHHHHHHHH
Confidence 998887654 4577899999999999999999999999999999999999998654322 122223333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++.+++|+|++++++++++ ...++|+++.+|||+.+
T Consensus 203 ~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~G~~~~~~~g~~~ 244 (245)
T PRK07060 203 AAIPLGRFAEVDDVAAPILFLLSDA-ASMVSGVSLPVDGGYTA 244 (245)
T ss_pred hcCCCCCCCCHHHHHHHHHHHcCcc-cCCccCcEEeECCCccC
Confidence 4455667899999999999999765 57899999999999754
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=254.77 Aligned_cols=242 Identities=30% Similarity=0.399 Sum_probs=204.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|++|||||++|||.++|+.|+++|++|+++ +|+.++.++..+.+... +.++.++.+|++++++++++++++.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999 99988877776666542 34688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.+++++.+++|+.+++.+++.+.+.+. +.+.+++|++|
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~~v~~s 141 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMI------------------KRKSGVIVNIS 141 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEC
Confidence 999999999999986432 4567899999999999999999999999997 55678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. +...+|+++|++++.+++.++.++...||++++|+||+++|++.+.... .....+..
T Consensus 142 S~~~~~~~------------~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~---~~~~~~~~ 206 (247)
T PRK05565 142 SIWGLIGA------------SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSE---EDKEGLAE 206 (247)
T ss_pred CHhhccCC------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccCh---HHHHHHHh
Confidence 98887664 4567899999999999999999999999999999999999998765432 11111222
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+..+..+|+++|+.++++++.. ...++|+++.+|++..
T Consensus 207 ~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~~~~~ 246 (247)
T PRK05565 207 EIPLGRLGKPEEIAKVVLFLASDD-ASYITGQIITVDGGWT 246 (247)
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCc-cCCccCcEEEecCCcc
Confidence 233455679999999999999765 6789999999999854
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=256.84 Aligned_cols=243 Identities=29% Similarity=0.366 Sum_probs=198.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++|+++||||+||||+++|++|+++|++|++. .|+.+++++..+++... +.++.++++|++|++++.++++++.
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999775 78887777666665432 2357889999999999999999998
Q ss_pred HhC------CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 217 KEN------KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 217 ~~~------g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+++ +++|++|||||..... .+.+.+.++.++++|+.+++++++.+++.|. + .
T Consensus 80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~--~ 139 (254)
T PRK12746 80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLR------------------A--E 139 (254)
T ss_pred HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------c--C
Confidence 876 5799999999986443 4567889999999999999999999999886 2 3
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+++|++||..+..+. ++...|++||+|+++++++++.++.+.|++|++++||++.|++.+.... .+.
T Consensus 140 ~~~v~~sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~~~ 206 (254)
T PRK12746 140 GRVINISSAEVRLGF------------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD-DPE 206 (254)
T ss_pred CEEEEECCHHhcCCC------------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc-Chh
Confidence 799999998876554 5677899999999999999999999999999999999999998754321 121
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.........+.++..+++|+|+.+.++++++ ...++|+.+.++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~i~~~~~ 253 (254)
T PRK12746 207 IRNFATNSSVFGRIGQVEDIADAVAFLASSD-SRWVTGQIIDVSGGFC 253 (254)
T ss_pred HHHHHHhcCCcCCCCCHHHHHHHHHHHcCcc-cCCcCCCEEEeCCCcc
Confidence 2222222233456779999999999998654 5678999999998854
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=255.43 Aligned_cols=228 Identities=27% Similarity=0.254 Sum_probs=190.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++|+++||||++|||++++++|+++|++|++++|+.++.++..+++.... .++.++.+|+++++++.++++++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999988777766665432 3678899999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|++|||||..... .+.+.++++.++++|+.+++++++.+++.|. +++.++||++||..
T Consensus 83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~isS~~ 144 (241)
T PRK07454 83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMR------------------ARGGGLIINVSSIA 144 (241)
T ss_pred CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHH------------------hcCCcEEEEEccHH
Confidence 999999999986432 4567889999999999999999999999997 44568999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++..+|++||++++.+++.++.|+++.||++++|+||+++|++...... . ....
T Consensus 145 ~~~~~------------~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~-----~----~~~~ 203 (241)
T PRK07454 145 ARNAF------------PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV-----Q----ADFD 203 (241)
T ss_pred hCcCC------------CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc-----c----cccc
Confidence 76543 5577899999999999999999999999999999999999998543210 0 0011
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEE
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i 409 (429)
.....+|+++|++++++++.+....+.+..+
T Consensus 204 ~~~~~~~~~va~~~~~l~~~~~~~~~~~~~~ 234 (241)
T PRK07454 204 RSAMLSPEQVAQTILHLAQLPPSAVIEDLTL 234 (241)
T ss_pred cccCCCHHHHHHHHHHHHcCCccceeeeEEe
Confidence 1345799999999999998875544444444
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=257.31 Aligned_cols=247 Identities=24% Similarity=0.259 Sum_probs=197.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|+++||||++|||.++|+.|+++|++|++++|+. +..++..+.+... +.++.++++|+++++++.++++++.+.++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAWG 79 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999864 3444444444332 23688899999999999999999999999
Q ss_pred CeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 221 KINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 221 ~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|++|||||.... ..+.+.+++++.+++|+.+++++++.+.+.|.+..... ....++||++||
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~iv~~sS 147 (256)
T PRK12745 80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPE------------ELPHRSIVFVSS 147 (256)
T ss_pred CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcC------------CCCCcEEEEECC
Confidence 99999999997542 24567889999999999999999999999998431100 001468999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK- 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~- 375 (429)
..+..+. ++...|++||++++++++.++.|+.++||+|++|+||.+.|++...... .....+..
T Consensus 148 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~---~~~~~~~~~ 212 (256)
T PRK12745 148 VNAIMVS------------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTA---KYDALIAKG 212 (256)
T ss_pred hhhccCC------------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccch---hHHhhhhhc
Confidence 9887664 4567899999999999999999999999999999999999998654321 11111111
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+..++.+|+|+|+++.+++.+ ...+++|+.+.++||...+
T Consensus 213 ~~~~~~~~~~~d~a~~i~~l~~~-~~~~~~G~~~~i~gg~~~~ 254 (256)
T PRK12745 213 LVPMPRWGEPEDVARAVAALASG-DLPYSTGQAIHVDGGLSIP 254 (256)
T ss_pred CCCcCCCcCHHHHHHHHHHHhCC-cccccCCCEEEECCCeecc
Confidence 23445678999999999999855 4678899999999997764
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=254.28 Aligned_cols=231 Identities=26% Similarity=0.299 Sum_probs=190.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++|+++||||++|||++++++|+++|++|++++|+.+. .. ...++.+|+++.++++++++++.+.+
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~------~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID------DF-------PGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc------cc-------CceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 357999999999999999999999999999999998753 00 11367899999999999999998876
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|++|||||..... .+.+.+++++.+++|+.+++.+++.++|.|+ +.+.++||++||.
T Consensus 68 -~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~sS~ 128 (234)
T PRK07577 68 -PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMK------------------LREQGRIVNICSR 128 (234)
T ss_pred -CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEEccc
Confidence 689999999986543 4457889999999999999999999999998 4456899999997
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
+. .+. +...+|++||+++++++++++.|+++.||++++|+||++.|++.+......+..........
T Consensus 129 ~~-~~~------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~ 195 (234)
T PRK07577 129 AI-FGA------------LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI 195 (234)
T ss_pred cc-cCC------------CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC
Confidence 53 332 45678999999999999999999999999999999999999987644221222222333444
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+..+..+|+|+|..++++++++ ..+++|+.+.++|+..
T Consensus 196 ~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~~g~~~ 233 (234)
T PRK07577 196 PMRRLGTPEEVAAAIAFLLSDD-AGFITGQVLGVDGGGS 233 (234)
T ss_pred CCCCCcCHHHHHHHHHHHhCcc-cCCccceEEEecCCcc
Confidence 5556779999999999999765 5689999999998854
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=286.91 Aligned_cols=232 Identities=26% Similarity=0.319 Sum_probs=193.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
...++++++|||||+||||+++|++|+++|++|++++|+.+++++..++++... ..+.+++||++|.++++++++++.
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999998888877775543 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+||||||+.... .+.+.++++.++++|+.|++++++.++|.|.+ +...|+||++
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----------------~~~~g~iv~~ 450 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVE-----------------RGTGGHIVNV 450 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCcEEEEE
Confidence 9999999999999986543 56788999999999999999999999999983 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--chhHH--
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--DSWLS-- 370 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--~~~~~-- 370 (429)
||.++..+. ++..+|++||+|+++++++|+.|++++||+|++|+||+|+|+|.+..... ..+..
T Consensus 451 sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 518 (582)
T PRK05855 451 ASAAAYAPS------------RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEAR 518 (582)
T ss_pred CChhhccCC------------CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhh
Confidence 999987764 56789999999999999999999999999999999999999987654210 00000
Q ss_pred -HHHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 371 -TVVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 371 -~~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
..........+..+|+++|+.+++++..+
T Consensus 519 ~~~~~~~~~~~~~~~p~~va~~~~~~~~~~ 548 (582)
T PRK05855 519 RRGRADKLYQRRGYGPEKVAKAIVDAVKRN 548 (582)
T ss_pred HHhhhhhhccccCCCHHHHHHHHHHHHHcC
Confidence 11111222234468999999999999664
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=260.38 Aligned_cols=244 Identities=23% Similarity=0.249 Sum_probs=197.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++..... ..+.++++|++++++++++++++.+.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 5799999999999999999999999999999999888877777754432 235567899999999999999999999999
Q ss_pred eEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|++|||||.... ..+.+.++++..+++|+.+++.+++.++|.|.+ ....|+||++||..+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----------------~~~~g~ii~isS~~~~ 142 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVA-----------------AGRGGHLVNVSSAAGL 142 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------CCCCcEEEEEcccccc
Confidence 999999997543 256788999999999999999999999999962 2245899999998776
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----CchhHHHHHHhH
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDSWLSTVVLKP 376 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~~~~~~~~~~~ 376 (429)
.+. +...+|++||+++.+|++.++.|+.++||+|++|+||.++|++.+.... ............
T Consensus 143 ~~~------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 210 (272)
T PRK07832 143 VAL------------PWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR 210 (272)
T ss_pred CCC------------CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh
Confidence 553 5577899999999999999999999999999999999999998764311 011111111111
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
..++..+|+|+|+.+++++..+ ++++|..+..+++....+
T Consensus 211 -~~~~~~~~~~vA~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 250 (272)
T PRK07832 211 -FRGHAVTPEKAAEKILAGVEKN--RYLVYTSPDIRALYWFKR 250 (272)
T ss_pred -cccCCCCHHHHHHHHHHHHhcC--CeEEecCcchHHHHHHHh
Confidence 1245679999999999999654 567787777777766554
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=262.18 Aligned_cols=222 Identities=24% Similarity=0.296 Sum_probs=185.8
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+..+++||+++||||+||||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.+++++++++
T Consensus 33 ~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999988888777765432 3577889999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCCC--C--CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 215 VKKENKKINVLINNAGVSGCRK--M--LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~--~--~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+.+.++++|++|||||...... + .+.++++.++++|+.|++.+++.++|.|. +.+.|+
T Consensus 111 ~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~ 172 (293)
T PRK05866 111 VEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGML------------------ERGDGH 172 (293)
T ss_pred HHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCcE
Confidence 9999999999999999865431 1 13578899999999999999999999997 456789
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. .++..+|++||+|+++|+++++.|+.++||+|++|+||+++|++.......
T Consensus 173 iv~isS~~~~~~~-----------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~~----- 236 (293)
T PRK05866 173 IINVATWGVLSEA-----------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKAY----- 236 (293)
T ss_pred EEEECChhhcCCC-----------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccccc-----
Confidence 9999997654321 145678999999999999999999999999999999999999987543210
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.. ....+|+++|+.++..+..+
T Consensus 237 ----~~---~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 237 ----DG---LPALTADEAAEWMVTAARTR 258 (293)
T ss_pred ----cC---CCCCCHHHHHHHHHHHHhcC
Confidence 00 12469999999999998654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=252.00 Aligned_cols=239 Identities=27% Similarity=0.357 Sum_probs=196.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc----ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR----DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R----~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
++++|+++||||+||||+++|+.|+++|++|++++| +.+..++..+++... +.++.++.+|+++.+++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999765 344444444444332 23688899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHH-HHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLL-DKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.++++|++|||||..... ...+.++++..+++|+.+++.+++.+. +.+. +...+++
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~------------------~~~~~~i 142 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIR------------------ARRGGRI 142 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh------------------cCCCeEE
Confidence 999989999999999986532 556788999999999999999999999 5554 4456899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||..+..+. ++...|+.+|++++.+++.++.++.+.||++++|+||+++|++...... ..
T Consensus 143 v~~sS~~~~~~~------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~-----~~ 205 (249)
T PRK12827 143 VNIASVAGVRGN------------RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAP-----TE 205 (249)
T ss_pred EEECCchhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccch-----HH
Confidence 999998887664 5577899999999999999999999999999999999999998654321 12
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
......+.....+++++|+.+++++.+. ..+++|+++.++||.
T Consensus 206 ~~~~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~~g~ 248 (249)
T PRK12827 206 HLLNPVPVQRLGEPDEVAALVAFLVSDA-ASYVTGQVIPVDGGF 248 (249)
T ss_pred HHHhhCCCcCCcCHHHHHHHHHHHcCcc-cCCccCcEEEeCCCC
Confidence 2333344455679999999999999654 578899999999874
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=256.82 Aligned_cols=238 Identities=22% Similarity=0.258 Sum_probs=194.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|+++||||+||||+++|++|+++|++|++++|+.+++++..+.+ ...+..+++|++|.++++++++++.+.++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999988776554432 22577889999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|++|||||..... .+.+.+++++++++|+.+++++++.++|.|+ +.+.++||++||.+
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~vsS~~ 138 (275)
T PRK08263 77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLR------------------EQRSGHIIQISSIG 138 (275)
T ss_pred CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEEEcChh
Confidence 999999999986543 5568899999999999999999999999997 45668999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCc---hhHHHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYD---SWLSTV 372 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~---~~~~~~ 372 (429)
+..+. ++...|++||++++++++.++.|+++.||+|++|+||.+.|++..... ... +.....
T Consensus 139 ~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~ 206 (275)
T PRK08263 139 GISAF------------PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREE 206 (275)
T ss_pred hcCCC------------CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHH
Confidence 87664 557789999999999999999999999999999999999999874211 000 111122
Q ss_pred HHhHHhhhcc-CCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFI-KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~-~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+....+.... .+|+|+|+.+++++..+ ...++++...++..
T Consensus 207 ~~~~~~~~~~~~~p~dva~~~~~l~~~~---~~~~~~~~~~~~~~ 248 (275)
T PRK08263 207 LAEQWSERSVDGDPEAAAEALLKLVDAE---NPPLRLFLGSGVLD 248 (275)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHcCC---CCCeEEEeCchHHH
Confidence 2233344556 89999999999999654 23577776655433
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=260.72 Aligned_cols=221 Identities=23% Similarity=0.281 Sum_probs=179.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC-
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN- 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~- 219 (429)
.+|+++||||+||||+++|++|+++|++|++++|+.+++++..+ ..+.++.+|++|.++++++++++.+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999887654432 136678999999999999999997765
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|++|||||..... .+.+.++++.++++|+.|++.+++.++|.|. +.+.|+||++||.
T Consensus 75 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~------------------~~~~g~iv~isS~ 136 (277)
T PRK05993 75 GRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMR------------------KQGQGRIVQCSSI 136 (277)
T ss_pred CCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHh------------------hcCCCEEEEECCh
Confidence 6899999999986543 5568899999999999999999999999998 5567899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-------c----
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-------D---- 366 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-------~---- 366 (429)
.+..+. ++..+|++||+|+++|+++|+.|++++||+|++|+||+++|++.++.... +
T Consensus 137 ~~~~~~------------~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~ 204 (277)
T PRK05993 137 LGLVPM------------KYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVH 204 (277)
T ss_pred hhcCCC------------CccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchh
Confidence 886654 56789999999999999999999999999999999999999987542100 0
Q ss_pred hhHH----HHHHh-HHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 367 SWLS----TVVLK-PLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 367 ~~~~----~~~~~-~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.... ..... .....+..+|+++|+.++..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i~~a~~~~ 242 (277)
T PRK05993 205 RAAYQQQMARLEGGGSKSRFKLGPEAVYAVLLHALTAP 242 (277)
T ss_pred HHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHcCC
Confidence 0000 00100 011123568999999999999665
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=255.01 Aligned_cols=224 Identities=23% Similarity=0.274 Sum_probs=188.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||+||||++++++|+++|++|++++|+.+++++..+++.... .++.++++|+++.++++++++.+.+.++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999999999999988888877775543 367889999999999999999999999999
Q ss_pred eEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|+||||||.... ..+.+.+++++++++|+.+++.+++.++|.|. +.+.++||++||..+.
T Consensus 79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~vsS~~~~ 140 (270)
T PRK05650 79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFK------------------RQKSGRIVNIASMAGL 140 (270)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHH------------------hCCCCEEEEECChhhc
Confidence 999999998654 35667899999999999999999999999997 4456899999999887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++...|++||+++++++++|+.|+.+.||++++|+||+++|++........+...... ......
T Consensus 141 ~~~------------~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-~~~~~~ 207 (270)
T PRK05650 141 MQG------------PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQV-GKLLEK 207 (270)
T ss_pred CCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHH-HHHhhc
Confidence 654 5678999999999999999999999999999999999999998765432222222211 112223
Q ss_pred ccCCHHHHHHHHHHHhcCC
Q psy12836 381 FIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~ 399 (429)
...+++++|+.++.++...
T Consensus 208 ~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 208 SPITAADIADYIYQQVAKG 226 (270)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3579999999999999654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=275.87 Aligned_cols=239 Identities=24% Similarity=0.295 Sum_probs=195.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...++||++|||||++|||+++|+.|+++|++|++++|.. +.+.+..+++ ....+.+|+++.+++++++++
T Consensus 205 ~~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-------~~~~~~~Dv~~~~~~~~~~~~ 277 (450)
T PRK08261 205 DRPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-------GGTALALDITAPDAPARIAEH 277 (450)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHH
Confidence 3457899999999999999999999999999999998843 3333333322 224678999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+.++++|++|||||+.... ...+.++|+.++++|+.+++++++.+.+.+. .+..++||
T Consensus 278 ~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~g~iv 339 (450)
T PRK08261 278 LAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGA------------------LGDGGRIV 339 (450)
T ss_pred HHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhh------------------hcCCCEEE
Confidence 999999999999999986543 4568899999999999999999999998654 33568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++...|+++|+++++|+++++.|+.++||++|+|+||+++|++....+....+..
T Consensus 340 ~~SS~~~~~g~------------~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~-- 405 (450)
T PRK08261 340 GVSSISGIAGN------------RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPFATREAG-- 405 (450)
T ss_pred EECChhhcCCC------------CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccchhHHHHH--
Confidence 99999887664 5678999999999999999999999999999999999999998765432111111
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....++.+...|+|+|++++||+++ ...++||+.+.+||+..
T Consensus 406 -~~~~~l~~~~~p~dva~~~~~l~s~-~~~~itG~~i~v~g~~~ 447 (450)
T PRK08261 406 -RRMNSLQQGGLPVDVAETIAWLASP-ASGGVTGNVVRVCGQSL 447 (450)
T ss_pred -hhcCCcCCCCCHHHHHHHHHHHhCh-hhcCCCCCEEEECCCcc
Confidence 1112335567999999999999954 57899999999999754
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=255.00 Aligned_cols=212 Identities=23% Similarity=0.299 Sum_probs=181.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++... . ++.++++|+++.++++++++++.+++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 479999999999999999999999999999999998877766655321 1 6888999999999999999999999999
Q ss_pred eeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|++|||||..... ...+.++++.++++|+.|++++++.++|.|. +++.++||++||.+
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~------------------~~~~~~iv~isS~~ 140 (257)
T PRK07024 79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMR------------------AARRGTLVGIASVA 140 (257)
T ss_pred CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHH------------------hcCCCEEEEEechh
Confidence 99999999986432 2257789999999999999999999999997 55678999999998
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. +....|++||++++.++++++.|+.++||+|++|+||++.|++...... .
T Consensus 141 ~~~~~------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~ 195 (257)
T PRK07024 141 GVRGL------------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNPY-------------P 195 (257)
T ss_pred hcCCC------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcCCC-------------C
Confidence 87764 5577899999999999999999999999999999999999997653221 0
Q ss_pred hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~ 399 (429)
.....+|+++|+.++.++.+.
T Consensus 196 ~~~~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 196 MPFLMDADRFAARAARAIARG 216 (257)
T ss_pred CCCccCHHHHHHHHHHHHhCC
Confidence 012458999999999999654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=249.26 Aligned_cols=241 Identities=24% Similarity=0.303 Sum_probs=195.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|+++||||+||||++++++|+++|++|+++ .|+.++.++...++... +.++..+++|++|+++++++++++.+.+++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 79 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDEP 79 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999999874 67777777666666443 235788999999999999999999999999
Q ss_pred eeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|++|||||.... ..+.+.++++.++++|+.+++++++.+++.|.+.. ....|+||++||..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---------------~~~~g~~v~~sS~~ 144 (247)
T PRK09730 80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKH---------------GGSGGAIVNVSSAA 144 (247)
T ss_pred CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC---------------CCCCcEEEEECchh
Confidence 9999999997532 24567889999999999999999999999987421 12358999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+.+ .....|+++|++++++++.++.|+.+.||++++++||.+.|++...... +..........+
T Consensus 145 ~~~~~~-----------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~--~~~~~~~~~~~~ 211 (247)
T PRK09730 145 SRLGAP-----------GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE--PGRVDRVKSNIP 211 (247)
T ss_pred hccCCC-----------CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC--HHHHHHHHhcCC
Confidence 776541 1235799999999999999999999999999999999999997543221 112222333445
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..+..+|+|+|+.++++++++ ..+++|+++.++|+
T Consensus 212 ~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~~~g~ 246 (247)
T PRK09730 212 MQRGGQPEEVAQAIVWLLSDK-ASYVTGSFIDLAGG 246 (247)
T ss_pred CCCCcCHHHHHHHHHhhcChh-hcCccCcEEecCCC
Confidence 556779999999999999765 56799999999986
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=247.53 Aligned_cols=243 Identities=29% Similarity=0.401 Sum_probs=200.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++||||+||||+++++.|+++|++|+++.|+..+ .+...+++... +.++..+.+|+++.+++.++++++.+
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999888876653 44444544332 34688889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.+++++.+++|+.+++.+.+.+.+.+. +.+.+++|++|
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~~v~is 141 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMM------------------KQRSGRIINIS 141 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCeEEEEEc
Confidence 999999999999976533 4567889999999999999999999999987 44568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|+++|++++.+++.++.++...||++++++||+++|++.+... +........
T Consensus 142 s~~~~~~~------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~---~~~~~~~~~ 206 (248)
T PRK05557 142 SVVGLMGN------------PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALP---EDVKEAILA 206 (248)
T ss_pred ccccCcCC------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccC---hHHHHHHHh
Confidence 98777664 457789999999999999999999999999999999999998865542 122222333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.....+++++|+.+.+++.+ ....++|+.|.+||+...
T Consensus 207 ~~~~~~~~~~~~va~~~~~l~~~-~~~~~~g~~~~i~~~~~~ 247 (248)
T PRK05557 207 QIPLGRLGQPEEIASAVAFLASD-EAAYITGQTLHVNGGMVM 247 (248)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc-ccCCccccEEEecCCccC
Confidence 33445678999999999999865 356789999999998654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=248.74 Aligned_cols=244 Identities=27% Similarity=0.338 Sum_probs=203.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||+++||++++++|+++|++|++++|+.++..+..+++.... ..+.++.+|++|.++++++++++.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999888777777665433 35888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... ...+.++++..+++|+.+++.+++.+++.|. +.+.++||++||
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~ii~~ss 142 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALI------------------RAGGGRIVLTSS 142 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEEEEec
Confidence 99999999999986543 3567889999999999999999999999987 445689999999
Q ss_pred cccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 297 VAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 297 ~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
..+. .+. ++...|+++|++++++++.++.++.+.|++++.++||.+.|+..+.... ......+..
T Consensus 143 ~~~~~~~~------------~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--~~~~~~~~~ 208 (251)
T PRK12826 143 VAGPRVGY------------PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD--AQWAEAIAA 208 (251)
T ss_pred hHhhccCC------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc--hHHHHHHHh
Confidence 8776 332 5577899999999999999999999999999999999999997655431 111122223
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+...+.+++|+|+.+++++..+ ..+++|+.|..+||...
T Consensus 209 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~g~~~ 249 (251)
T PRK12826 209 AIPLGRLGEPEDIAAAVLFLASDE-ARYITGQTLPVDGGATL 249 (251)
T ss_pred cCCCCCCcCHHHHHHHHHHHhCcc-ccCcCCcEEEECCCccC
Confidence 344456789999999999998554 56789999999988654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=248.80 Aligned_cols=244 Identities=23% Similarity=0.254 Sum_probs=193.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++++|++|||||++|||++++++|+++|++|++..|+ .+........+... +.++..+.+|++++++++++++++.
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREGCETLAKATI 79 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999887764 34444444444332 2357788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|++|||||..... ...+.+.++..+++|+.+++.+++.+.+.|. + .++||++
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~--~~~iv~~ 139 (252)
T PRK06077 80 DRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMR------------------E--GGAIVNI 139 (252)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhh------------------c--CcEEEEE
Confidence 9999999999999975433 4457778899999999999999999999986 2 3799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++...|++||++++++++.++.|+++ +|+++.+.||+++|++................
T Consensus 140 sS~~~~~~~------------~~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~ 206 (252)
T PRK06077 140 ASVAGIRPA------------YGLSIYGAMKAAVINLTKYLALELAP-KIRVNAIAPGFVKTKLGESLFKVLGMSEKEFA 206 (252)
T ss_pred cchhccCCC------------CCchHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEeeCCccChHHHhhhhcccccHHHHH
Confidence 998876553 56789999999999999999999988 89999999999999976443211111111111
Q ss_pred hH-HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 375 KP-LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 375 ~~-~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.. .+.+.+.+|+|+|+++++++..+ .++|+.|.+++|.....
T Consensus 207 ~~~~~~~~~~~~~dva~~~~~~~~~~---~~~g~~~~i~~g~~~~~ 249 (252)
T PRK06077 207 EKFTLMGKILDPEEVAEFVAAILKIE---SITGQVFVLDSGESLKG 249 (252)
T ss_pred HhcCcCCCCCCHHHHHHHHHHHhCcc---ccCCCeEEecCCeeccC
Confidence 11 12345689999999999999643 56899999999987654
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=253.57 Aligned_cols=214 Identities=21% Similarity=0.214 Sum_probs=178.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++|+++||||++|||+++|++|+++| ++|++++|+.++ +++..+++.... ..++.++++|++|.++++++++++.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~- 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA- 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh-
Confidence 57899999999999999999999995 999999999886 777777775533 23688999999999999999999886
Q ss_pred CCCeeEEEEccccCCCCC--CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCRK--MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~--~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||+|...... ..+.++..+++++|+.+++.+++.++|.|. +++.++||++||
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~------------------~~~~~~iv~isS 146 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMR------------------AQGFGQIIAMSS 146 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHH------------------hcCCceEEEEec
Confidence 589999999999865431 123445567899999999999999999998 556799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. ++..+|++||+++.+|+++|+.|+.++||+|++|+||+++|++.......
T Consensus 147 ~~g~~~~------------~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~~~----------- 203 (253)
T PRK07904 147 VAGERVR------------RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAKEA----------- 203 (253)
T ss_pred hhhcCCC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCCCC-----------
Confidence 8875543 45678999999999999999999999999999999999999987643210
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
....+|+|+|+.++.++.+++
T Consensus 204 ---~~~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 204 ---PLTVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCC
Confidence 124689999999999996653
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=249.46 Aligned_cols=241 Identities=31% Similarity=0.448 Sum_probs=193.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH--HHHHHHHHhhhcCC-ceEEEEEeeCCC-HHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK--CEKARKEVVLESKN-KYVLCRKCDLAS-QESIRAFAEE 214 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~--~~~~~~~l~~~~~~-~~v~~~~~Dls~-~~sv~~~~~~ 214 (429)
++++|+++||||++|||+++|+.|+++|++|++++|+.+. .+...+... ... ..+.+..+|+++ .++++.++++
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~ 79 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAA 79 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999988887664 333333333 111 257788899998 9999999999
Q ss_pred HHHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.+|++|++|||||+.. +..+.+.+++++++++|+.|++.+++.+.|.+. ++ +|
T Consensus 80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~---~I 138 (251)
T COG1028 80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMK------------------KQ---RI 138 (251)
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhh------------------hC---eE
Confidence 9999999999999999975 446778899999999999999999997777775 22 99
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCC-cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~-~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
|++||..+. +. ++ ..+|++||+|+.+|+++++.|+.++||+||+|+||++.|++.+..........
T Consensus 139 v~isS~~~~-~~------------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~~~~~~~~ 205 (251)
T COG1028 139 VNISSVAGL-GG------------PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAELEAL 205 (251)
T ss_pred EEECCchhc-CC------------CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhhhhhhhHH
Confidence 999999987 54 34 48999999999999999999999999999999999999999876542210000
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.......+..+...|++++..+.++.+.....+++|+.+.++|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 250 (251)
T COG1028 206 KRLAARIPLGRLGTPEEVAAAVAFLASDEAASYITGQTLPVDGGL 250 (251)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHcCcchhccccCCEEEeCCCC
Confidence 111111133467889999999998875544567899988877764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=248.70 Aligned_cols=233 Identities=24% Similarity=0.292 Sum_probs=194.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC--CHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA--SQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls--~~~sv~~~~~~ 214 (429)
...+++|+++||||++|||.+++++|+++|++|++++|+.+++++..+++.... ..++.++.+|++ +.++++++++.
T Consensus 7 ~~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 7 PDLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHH
Confidence 346789999999999999999999999999999999999988887777765433 235666777775 78999999999
Q ss_pred HHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.++++|+||||||.... ..+.+.+++++.+++|+.+++++++.+++.|. +++.++|
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~------------------~~~~~~i 147 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLL------------------KSPAASL 147 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHH------------------hCCCCEE
Confidence 99999999999999997543 24567889999999999999999999999997 5567899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||..+..+. ++..+|++||++++.+++.++.++...||++++++||.+.|++....... .
T Consensus 148 v~~ss~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~---~-- 210 (247)
T PRK08945 148 VFTSSSVGRQGR------------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPG---E-- 210 (247)
T ss_pred EEEccHhhcCCC------------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCc---c--
Confidence 999998877654 45778999999999999999999999999999999999999875432110 0
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
....+.+|+|+|+.++|+++++ ..+++|+++...
T Consensus 211 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 244 (247)
T PRK08945 211 ------DPQKLKTPEDIMPLYLYLMGDD-SRRKNGQSFDAQ 244 (247)
T ss_pred ------cccCCCCHHHHHHHHHHHhCcc-ccccCCeEEeCC
Confidence 0134679999999999998654 668999987543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=253.82 Aligned_cols=224 Identities=23% Similarity=0.231 Sum_probs=182.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|+++||||+||||++++++|+++|++|++++|+.++++...+. . ..++..+.+|++|.+++.++++++.+.++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----H-PDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----c-CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999998776554332 1 23577889999999999999999999999
Q ss_pred CeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|++|||||.... ..+.+.+++++++++|+.|++++++.++|+|+ +.+.++||++||.+
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~iv~iSS~~ 139 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMR------------------ARRRGHIVNITSMG 139 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------ccCCCEEEEEeccc
Confidence 99999999998643 35667889999999999999999999999997 55668999999998
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----CchhHHHHH-
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDSWLSTVV- 373 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~~~~~~~~- 373 (429)
+..+. ++..+|++||+++++++++++.|+.+.|++|++|+||.+.|++...... ..+.....+
T Consensus 140 ~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 207 (277)
T PRK06180 140 GLITM------------PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFG 207 (277)
T ss_pred ccCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHH
Confidence 87654 5678999999999999999999999999999999999999987432110 001111101
Q ss_pred -----HhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 374 -----LKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 374 -----~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
....+...+.+|+|+|+++++++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 208 PIRQAREAKSGKQPGDPAKAAQAILAAVESD 238 (277)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHcCC
Confidence 01112234679999999999999765
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=252.69 Aligned_cols=235 Identities=24% Similarity=0.214 Sum_probs=186.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++... +.++.++++|++|.++++++++++.+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999988888777776543 346888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||..... .+.+.++++.++++|+.|+++++++++|.|.+..... ....|+||++||
T Consensus 81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~------------~~~~g~iv~~sS 148 (287)
T PRK06194 81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKD------------PAYEGHIVNTAS 148 (287)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC------------CCCCeEEEEeCC
Confidence 99999999999987543 4567899999999999999999999999997421100 011379999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEEEEEeCCCccCCcccCCCCCc--------
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG--TGITVNAVHPGIVNTDILRHSSYYD-------- 366 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrVn~V~PG~v~T~~~~~~~~~~-------- 366 (429)
.++..+. ++..+|++||+++++++++++.|+.. .+||+++++||++.|++........
T Consensus 149 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~ 216 (287)
T PRK06194 149 MAGLLAP------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAP 216 (287)
T ss_pred hhhccCC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCcc
Confidence 9887664 45778999999999999999999874 5799999999999999865431100
Q ss_pred ---hh-HHHHHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 367 ---SW-LSTVVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 367 ---~~-~~~~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.+ ...............+++|+|+.++.++..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 217 PTRSQLIAQAMSQKAVGSGKVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred ccchhhHHHHHHHhhhhccCCCHHHHHHHHHHHHHcC
Confidence 00 0011111111122369999999999988443
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=251.51 Aligned_cols=230 Identities=28% Similarity=0.301 Sum_probs=188.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|++|||||+||||+++|+.|+++|++|++++|+.+.+++..+++.....+.++.++.+|++|.+++++ ++++.+.+
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 46899999999999999999999999999999999998887776665544333578899999999999999 99999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|++|||||...+. .+.+.+++++.+++|+.+++.+++.++|.|+ +.+.++||++||.
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~vsS~ 141 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMR------------------KQKSGKIINISSI 141 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEEECcc
Confidence 9999999999986543 4567889999999999999999999999997 4456899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------Cch---
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------YDS--- 367 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------~~~--- 367 (429)
++..+. ++...|++||+++++++++++.|+.++||++++++||+++|++...... ...
T Consensus 142 ~~~~~~------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~ 209 (280)
T PRK06914 142 SGRVGF------------PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYK 209 (280)
T ss_pred cccCCC------------CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchH
Confidence 877664 5678999999999999999999999999999999999999997653210 000
Q ss_pred hHHHHHHh--HHhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 368 WLSTVVLK--PLVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 368 ~~~~~~~~--~~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
........ ..+..++.+|+|+|++++++++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~ 244 (280)
T PRK06914 210 EYMKKIQKHINSGSDTFGNPIDVANLIVEIAESKR 244 (280)
T ss_pred HHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcCCC
Confidence 01111111 1123467899999999999997764
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=249.35 Aligned_cols=235 Identities=22% Similarity=0.236 Sum_probs=185.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|+++||||+||||+++|++|+++|++|++++|+. +.+++..+ .. +.++.++++|+++.++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAE----QY-NSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHh----cc-CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 6899999999999999999999999999999987 33333222 11 236788899999999999999998876653
Q ss_pred --e--eEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 222 --I--NVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 222 --i--D~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+ +++|+|||...+ ..+.+.+++.+.+++|+.+++.+++.+++.|.+ .+..++||++
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~~~iv~~ 139 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKD-----------------WKVDKRVINI 139 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhc-----------------cCCCceEEEe
Confidence 2 289999998643 356788999999999999999999999999872 2345799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCC---CchhH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSY---YDSWL 369 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~ 369 (429)
||..+..+. ++..+|+++|+|++++++.++.|++ +.||+|++|+||+++|++...... .....
T Consensus 140 sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 207 (251)
T PRK06924 140 SSGAAKNPY------------FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTN 207 (251)
T ss_pred cchhhcCCC------------CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchH
Confidence 998765443 6688999999999999999999985 468999999999999998653211 00011
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.+.+....+.+++.+|+|+|+.++++++++ .+++|+++.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~--~~~~G~~~~v~~ 249 (251)
T PRK06924 208 LDRFITLKEEGKLLSPEYVAKALRNLLETE--DFPNGEVIDIDE 249 (251)
T ss_pred HHHHHHHhhcCCcCCHHHHHHHHHHHHhcc--cCCCCCEeehhh
Confidence 122333334567889999999999999764 678999988765
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=234.40 Aligned_cols=183 Identities=31% Similarity=0.414 Sum_probs=166.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.|.++|||||++|||+++|++|.+.|-+||+++|++++++++.++. ..+....||+.|.++.+++++.++++
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~------p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN------PEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC------cchheeeecccchhhHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999887764 35778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 219 NKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
|..+++||||||+.... .+-..++.+..+++|+.++++++++++|++. +++.+.||+|
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~------------------~q~~a~IInV 137 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLL------------------RQPEATIINV 137 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCceEEEe
Confidence 99999999999997643 2234567788899999999999999999998 6778999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
||.-+..+. ...+.||++|+|++.++.+|+..++..+|.|--+.|-.|+|+
T Consensus 138 SSGLafvPm------------~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 138 SSGLAFVPM------------ASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ccccccCcc------------cccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 999888775 457789999999999999999999999999999999999996
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=244.87 Aligned_cols=231 Identities=29% Similarity=0.345 Sum_probs=192.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++... +.++.++++|++++++++++++++.+
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999998887777776432 34788899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++++|++|||||..... .+.+.+++++.+++|+.+++++++.+.+.|. ++..+++|++|
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 142 (239)
T PRK07666 81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMI------------------ERQSGDIINIS 142 (239)
T ss_pred HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCcEEEEEc
Confidence 999999999999986432 4567889999999999999999999999987 55678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|+++|+++.++++.++.|+.+.||++++|+||.+.|++........
T Consensus 143 s~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~--------- 201 (239)
T PRK07666 143 STAGQKGA------------AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLGLTD--------- 201 (239)
T ss_pred chhhccCC------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhccccc---------
Confidence 98877664 557789999999999999999999999999999999999999765432100
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.. ...+.+++++|+.++.+++.+. +.++...|-+
T Consensus 202 ~~-~~~~~~~~~~a~~~~~~l~~~~-----~~~~~~~~~~ 235 (239)
T PRK07666 202 GN-PDKVMQPEDLAEFIVAQLKLNK-----RTFIKSAGLW 235 (239)
T ss_pred cC-CCCCCCHHHHHHHHHHHHhCCC-----ceEEEEEEEe
Confidence 00 1245789999999999997652 4445544444
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=249.45 Aligned_cols=219 Identities=28% Similarity=0.302 Sum_probs=184.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++. . +.++.++++|++|.++++++++.+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~~D~~d~~~~~~~~~~~~~- 77 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP--Y-PGRHRWVVADLTSEAGREAVLARARE- 77 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh--c-CCceEEEEccCCCHHHHHHHHHHHHh-
Confidence 5689999999999999999999999999999999999988887776662 1 24688899999999999999999876
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||.... ..+.+.+++++++++|+.|++++++.++++|. +++.++||++||
T Consensus 78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~iv~isS 139 (263)
T PRK09072 78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLR------------------AQPSAMVVNVGS 139 (263)
T ss_pred cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCCEEEEecC
Confidence 7899999999998643 25567889999999999999999999999997 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. ++...|+++|+++.+++++++.|+.+.||+|++|+||+++|++...... .. ...
T Consensus 140 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~~---~~----~~~ 200 (263)
T PRK09072 140 TFGSIGY------------PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQ---AL----NRA 200 (263)
T ss_pred hhhCcCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhcc---cc----ccc
Confidence 8877654 5577899999999999999999999999999999999999997543210 01 111
Q ss_pred HhhhccCCHHHHHHHHHHHhcCC
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~ 399 (429)
. .....+|+|+|+.+++++...
T Consensus 201 ~-~~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 201 L-GNAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred c-cCCCCCHHHHHHHHHHHHhCC
Confidence 1 124679999999999999654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-30 Score=246.50 Aligned_cols=229 Identities=23% Similarity=0.292 Sum_probs=185.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.... .++.++++|+++.++++++++++.+.
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999887776666654432 36788899999999999999999998
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... .+.+.+++++.+++|+.+++++++.+++.|. ++..++||++||
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~------------------~~~~g~iv~isS 146 (274)
T PRK07775 85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMI------------------ERRRGDLIFVGS 146 (274)
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCceEEEECC
Confidence 99999999999986432 4567889999999999999999999999987 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-hhHHHHHHh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD-SWLSTVVLK 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~-~~~~~~~~~ 375 (429)
..+..+. ++...|++||++++++++.++.++.+.||++++|+||+++|++........ .........
T Consensus 147 ~~~~~~~------------~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~ 214 (274)
T PRK07775 147 DVALRQR------------PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK 214 (274)
T ss_pred hHhcCCC------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH
Confidence 8776553 456789999999999999999999989999999999999998754322100 000011110
Q ss_pred --HHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 376 --PLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 376 --~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.....++.+++|+|++++++++.+
T Consensus 215 ~~~~~~~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 215 WGQARHDYFLRASDLARAITFVAETP 240 (274)
T ss_pred hcccccccccCHHHHHHHHHHHhcCC
Confidence 111234679999999999999765
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=245.17 Aligned_cols=214 Identities=20% Similarity=0.288 Sum_probs=185.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++.++++|+++.++++++++++.+.+++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999988888777766555567899999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||+.... ...+.+.+++.+++|+.+++.+++.+++.|. +.+.++||++||..+
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~~sS~~~ 143 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFR------------------EQGSGHLVLISSVSA 143 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCeEEEEecccc
Confidence 99999999986543 4456788899999999999999999999987 446689999999888
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+.+ .+..+|++||++++++++.++.++...||+|++|+||+++|++.+.... .
T Consensus 144 ~~~~~-----------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--------------~ 198 (248)
T PRK08251 144 VRGLP-----------GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAKS--------------T 198 (248)
T ss_pred ccCCC-----------CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcccc--------------C
Confidence 76541 1357899999999999999999999899999999999999998765431 1
Q ss_pred hccCCHHHHHHHHHHHhcC
Q psy12836 380 LFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~ 398 (429)
.+..+++++|+.++..+..
T Consensus 199 ~~~~~~~~~a~~i~~~~~~ 217 (248)
T PRK08251 199 PFMVDTETGVKALVKAIEK 217 (248)
T ss_pred CccCCHHHHHHHHHHHHhc
Confidence 2356899999999998854
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=250.34 Aligned_cols=219 Identities=28% Similarity=0.324 Sum_probs=180.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++|+++||||+||||+++|++|+++|++|++++|+.++.+. ...+.++++|++|.++++++++++.+.+|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 56899999999999999999999999999999998765431 12467889999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||..... .+.+.++++.++++|+.|++.+++.++|.|+ +++.++||++||.+
T Consensus 73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~~~iv~isS~~ 134 (270)
T PRK06179 73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMR------------------AQGSGRIINISSVL 134 (270)
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCceEEEECCcc
Confidence 999999999986433 5568899999999999999999999999998 55678999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH--HHH----
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL--STV---- 372 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~--~~~---- 372 (429)
+..+. +....|++||+++++++++++.|+++.||++++|+||++.|++..........+ ...
T Consensus 135 ~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~ 202 (270)
T PRK06179 135 GFLPA------------PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAV 202 (270)
T ss_pred ccCCC------------CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHH
Confidence 87654 557789999999999999999999999999999999999999876542111111 000
Q ss_pred HHh--HHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 373 VLK--PLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 373 ~~~--~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
... ..+..+..+|+++|+.++.++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~va~~~~~~~~~~ 231 (270)
T PRK06179 203 VSKAVAKAVKKADAPEVVADTVVKAALGP 231 (270)
T ss_pred HHHHHHhccccCCCHHHHHHHHHHHHcCC
Confidence 000 011234578999999999999765
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=247.01 Aligned_cols=218 Identities=23% Similarity=0.224 Sum_probs=182.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh-CCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE-NKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~-~g~ 221 (429)
|+++||||++|||++++++|+++|++|++++|+.+++++..+.+. +.++.++++|+++.++++++++.+.+. +++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999988777666543 346889999999999999999998776 789
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||..... ...+.++++.++++|+.+++.+++.+.+.|+ ..+.++||++||..+
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~isS~~~ 139 (260)
T PRK08267 78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLK------------------ATPGARVINTSSASA 139 (260)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCCEEEEeCchhh
Confidence 99999999986543 4567889999999999999999999999997 556789999999888
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. +....|++||+++++++++++.++.+.||++++|+||+++|++.+.... . ........ .
T Consensus 140 ~~~~------------~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~-~~~~~~~~--~ 202 (260)
T PRK08267 140 IYGQ------------PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN--E-VDAGSTKR--L 202 (260)
T ss_pred CcCC------------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc--h-hhhhhHhh--c
Confidence 7765 4577899999999999999999999999999999999999998764211 0 11111111 2
Q ss_pred hccCCHHHHHHHHHHHhcCC
Q psy12836 380 LFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~ 399 (429)
.+..+|+++|+++++++..+
T Consensus 203 ~~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 203 GVRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred cCCCCHHHHHHHHHHHHhCC
Confidence 34578999999999998543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=242.49 Aligned_cols=242 Identities=28% Similarity=0.389 Sum_probs=202.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++.+|++|||||++|||.+++++|+++|++|++++|+.++.+....++.... .++.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999988877666665332 36788899999999999999999888
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... ...+.++++..++.|+.+++++++.+.++|. +.+.++||++||
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~------------------~~~~~~ii~~ss 141 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMI------------------KARYGRIVNISS 141 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEECc
Confidence 89999999999976432 4567889999999999999999999999987 445689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+. .+...|+.+|++++.+++++++++.+.|+++++|+||.+.+++..... ....+.....
T Consensus 142 ~~~~~~~------------~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~---~~~~~~~~~~ 206 (246)
T PRK05653 142 VSGVTGN------------PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLP---EEVKAEILKE 206 (246)
T ss_pred HHhccCC------------CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhh---HHHHHHHHhc
Confidence 8776543 457789999999999999999999989999999999999998765422 1122222233
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.....+++|+|+.++++++. ....++|++|.++||..
T Consensus 207 ~~~~~~~~~~dva~~~~~~~~~-~~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 207 IPLGRLGQPEEVANAVAFLASD-AASYITGQVIPVNGGMY 245 (246)
T ss_pred CCCCCCcCHHHHHHHHHHHcCc-hhcCccCCEEEeCCCee
Confidence 4445678999999999999954 45678999999999864
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=231.51 Aligned_cols=237 Identities=29% Similarity=0.349 Sum_probs=183.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHc-CCEE-EEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKR-KAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~-G~~V-il~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.-|.++||||++|||+.++++|.+. |..+ +.++|+++++.+..+.. ...+.+++.+++|+++.+++.++++++.+-
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k--~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALK--SKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHh--hccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 3467999999999999999999975 6554 55578888862222221 112458999999999999999999999887
Q ss_pred --CCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 219 --NKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 219 --~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
...+|+||||||+..+- ...+.+.|.+++++|.+|++.++|+++|++++.......... ....+.|||
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~-------s~~raaIin 152 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGL-------SVSRAAIIN 152 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcc-------cccceeEEE
Confidence 45899999999987543 445677899999999999999999999999875443211111 223568999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+.. ...+..+|..||+|+++|+|+++.|+++.+|-|..+|||+|.|+|...-.
T Consensus 153 isS~~~s~~~~---------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~a---------- 213 (249)
T KOG1611|consen 153 ISSSAGSIGGF---------RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKKA---------- 213 (249)
T ss_pred eeccccccCCC---------CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCCc----------
Confidence 99988765431 12567899999999999999999999999999999999999999976432
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..++||.+..++.....- ...-+|.||+.|+-
T Consensus 214 --------~ltveeSts~l~~~i~kL-~~~hnG~ffn~dlt 245 (249)
T KOG1611|consen 214 --------ALTVEESTSKLLASINKL-KNEHNGGFFNRDGT 245 (249)
T ss_pred --------ccchhhhHHHHHHHHHhc-CcccCcceEccCCC
Confidence 347888888888776432 23458999988764
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-30 Score=243.64 Aligned_cols=228 Identities=22% Similarity=0.316 Sum_probs=182.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
++++||||+||||.++|+.|+++|++|++++|+.+++++..+.+ +.++.++.+|+++.++++++++++.+.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 75 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999988776655443 2357888999999999999999999999999
Q ss_pred eEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 223 NVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 223 D~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
|++|||||... +..+.+.+++++++++|+.|++.+++.+++.|. +.+.++||++||.++
T Consensus 76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~isS~~~ 137 (248)
T PRK10538 76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMV------------------ERNHGHIINIGSTAG 137 (248)
T ss_pred CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEECCccc
Confidence 99999999753 235568899999999999999999999999997 456689999999877
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++...|++||++++++++.++.++.+.||+||+|+||.+.|++.......... .........
T Consensus 138 ~~~~------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~--~~~~~~~~~ 203 (248)
T PRK10538 138 SWPY------------AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDD--GKAEKTYQN 203 (248)
T ss_pred CCCC------------CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcH--HHHHhhccc
Confidence 6543 55778999999999999999999999999999999999985544321110000 000000111
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceE
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKY 408 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~ 408 (429)
....+|+|+|++++|+++.+.. +.+|+.
T Consensus 204 ~~~~~~~dvA~~~~~l~~~~~~-~~~~~~ 231 (248)
T PRK10538 204 TVALTPEDVSEAVWWVATLPAH-VNINTL 231 (248)
T ss_pred cCCCCHHHHHHHHHHHhcCCCc-ccchhh
Confidence 2346999999999999987743 444544
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=244.55 Aligned_cols=241 Identities=19% Similarity=0.128 Sum_probs=187.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||+++||||+||||++++++|+++|++|++++|+.+ ..+...+++... +.++.++++|+++.++++++++++.+
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999753 455555555432 23578889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.++++|++|||||..... ..+++..+++|+.+++++++.+.+.|. ..++||++||.
T Consensus 81 ~~~~~d~vi~~ag~~~~~----~~~~~~~~~vn~~~~~~l~~~~~~~~~--------------------~~~~iv~isS~ 136 (248)
T PRK07806 81 EFGGLDALVLNASGGMES----GMDEDYAMRLNRDAQRNLARAALPLMP--------------------AGSRVVFVTSH 136 (248)
T ss_pred hCCCCcEEEECCCCCCCC----CCCcceeeEeeeHHHHHHHHHHHhhcc--------------------CCceEEEEeCc
Confidence 999999999999864321 123567899999999999999998875 24799999996
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-CchhHHHHHHhH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-YDSWLSTVVLKP 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~~~~~~~ 376 (429)
.+..... ....+....|++||++++.+++.++.|+++.||+||+|+||++.|++...... ..+.... ...
T Consensus 137 ~~~~~~~-------~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~--~~~ 207 (248)
T PRK07806 137 QAHFIPT-------VKTMPEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIE--ARR 207 (248)
T ss_pred hhhcCcc-------ccCCccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHH--HHH
Confidence 5432110 01123467899999999999999999999999999999999999987543211 0111111 123
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.+++.+|+|+|+++++++++ .+++|+.|.++|+...
T Consensus 208 ~~~~~~~~~~dva~~~~~l~~~---~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 208 EAAGKLYTVSEFAAEVARAVTA---PVPSGHIEYVGGADYF 245 (248)
T ss_pred hhhcccCCHHHHHHHHHHHhhc---cccCccEEEecCccce
Confidence 4556889999999999999964 4679999999988654
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=240.30 Aligned_cols=234 Identities=26% Similarity=0.268 Sum_probs=195.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||+|+||++++++|+++|++|++++|+.++..+..+++... .+..+.+|++|.++++++++++.+
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999988776665555332 355678999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... ...+.+++++.+++|+.+++.+++++.+.+. .++.++||++|
T Consensus 79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~~s 140 (239)
T PRK12828 79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALT------------------ASGGGRIVNIG 140 (239)
T ss_pred HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHH------------------hcCCCEEEEEC
Confidence 999999999999976432 4457888999999999999999999999987 44678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|+++|++++.+++.++.++.+.||+++.++||.+.|++...... ..
T Consensus 141 S~~~~~~~------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~---------~~ 199 (239)
T PRK12828 141 AGAALKAG------------PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMP---------DA 199 (239)
T ss_pred chHhccCC------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCC---------ch
Confidence 98876553 4577899999999999999999998899999999999999986443211 00
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++|+|++++++++++ ..+++|+.+.++|+..+
T Consensus 200 --~~~~~~~~~dva~~~~~~l~~~-~~~~~g~~~~~~g~~~~ 238 (239)
T PRK12828 200 --DFSRWVTPEQIAAVIAFLLSDE-AQAITGASIPVDGGVAL 238 (239)
T ss_pred --hhhcCCCHHHHHHHHHHHhCcc-cccccceEEEecCCEeC
Confidence 1123578999999999999764 45789999999998653
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=244.45 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=176.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
|+++||||++|||+++|++|+++| +.|++..|+.... ....++.++++|+++.++++++. +.++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~Dls~~~~~~~~~----~~~~ 66 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----------FQHDNVQWHALDVTDEAEIKQLS----EQFT 66 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----------cccCceEEEEecCCCHHHHHHHH----HhcC
Confidence 479999999999999999999985 5676666654321 11236788999999999988854 4468
Q ss_pred CeeEEEEccccCCCC--------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 221 KINVLINNAGVSGCR--------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
++|+||||||..... ...+.+.++..+++|+.+++.+++.++|.|+ +++.++|+
T Consensus 67 ~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~------------------~~~~~~i~ 128 (235)
T PRK09009 67 QLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLK------------------QSESAKFA 128 (235)
T ss_pred CCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhcc------------------ccCCceEE
Confidence 999999999986421 3457788999999999999999999999987 44567999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG--TGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
++||..+.... +.+++...|++||+++++|+++|+.|+.+ .||+||+|+||+++|++.+...
T Consensus 129 ~iss~~~~~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~------- 192 (235)
T PRK09009 129 VISAKVGSISD---------NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQ------- 192 (235)
T ss_pred EEeeccccccc---------CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchh-------
Confidence 99986553321 11245678999999999999999999987 6999999999999999875432
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+..+..+|+|+|+.++++++++ .++++|+++..+|++.
T Consensus 193 ----~~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~~g~~~ 233 (235)
T PRK09009 193 ----QNVPKGKLFTPEYVAQCLLGIIANA-TPAQSGSFLAYDGETL 233 (235)
T ss_pred ----hccccCCCCCHHHHHHHHHHHHHcC-ChhhCCcEEeeCCcCC
Confidence 1123345679999999999999775 5688999999998864
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=242.25 Aligned_cols=226 Identities=19% Similarity=0.228 Sum_probs=182.1
Q ss_pred EEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeEE
Q psy12836 146 IVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVL 225 (429)
Q Consensus 146 LITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~l 225 (429)
+||||++|||+++|++|+++|++|++++|+.++++...+++.. +.++.++.+|+++.+++++++++ .+++|++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~l 73 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAE----AGPFDHV 73 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHh----cCCCCEE
Confidence 6999999999999999999999999999998877776665532 34678889999999999998876 3789999
Q ss_pred EEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 226 INNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 226 I~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
|||||..... .+.+.+++++++++|+.+++++++ .+.+. +.|+||++||.++..+.
T Consensus 74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~--------------------~~g~iv~~ss~~~~~~~ 131 (230)
T PRK07041 74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA--------------------PGGSLTFVSGFAAVRPS 131 (230)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc--------------------CCeEEEEECchhhcCCC
Confidence 9999986433 456789999999999999999999 33332 45899999999887654
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chhHHHHHHhHHhhhcc
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSWLSTVVLKPLVWLFI 382 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~ 382 (429)
++...|++||+++++++++++.|+.+ |+||+++||+++|++....... ............+..+.
T Consensus 132 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~--irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (230)
T PRK07041 132 ------------ASGVLQGAINAALEALARGLALELAP--VRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRV 197 (230)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHhhC--ceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCC
Confidence 56788999999999999999999975 9999999999999986543211 11122222333445567
Q ss_pred CCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 383 KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 383 ~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+|+|+|+++++++++ .+++|+.+.++||...
T Consensus 198 ~~~~dva~~~~~l~~~---~~~~G~~~~v~gg~~~ 229 (230)
T PRK07041 198 GQPEDVANAILFLAAN---GFTTGSTVLVDGGHAI 229 (230)
T ss_pred cCHHHHHHHHHHHhcC---CCcCCcEEEeCCCeec
Confidence 8999999999999964 4689999999998653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=276.09 Aligned_cols=248 Identities=25% Similarity=0.316 Sum_probs=205.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
....+.||+++||||+||||+++|+.|+++|++|++++|+.++++...+++... ..+.++.+|+++.++++++++++
T Consensus 416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHH
Confidence 455678999999999999999999999999999999999998887777666433 36788999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV 292 (429)
.+.+|++|++|||||..... ...+.++|+..+++|+.|++.+++.+.+.|+ +++ .|+||
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~------------------~~~~~g~iV 554 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMK------------------AQGLGGSIV 554 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCcEEE
Confidence 99999999999999986543 5568899999999999999999999999997 334 48999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc--cCCcccCCCC------
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV--NTDILRHSSY------ 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v--~T~~~~~~~~------ 364 (429)
++||..+..+. ++..+|++||++++++++.++.++++.||+||+|+||.+ .|++......
T Consensus 555 ~vsS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~ 622 (681)
T PRK08324 555 FIASKNAVNPG------------PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAA 622 (681)
T ss_pred EECCccccCCC------------CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhh
Confidence 99998887654 567899999999999999999999999999999999999 8887543210
Q ss_pred ---CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 365 ---YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+........+++...+++|+|+++++++++ ....++|+.+.+|||...
T Consensus 623 ~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~-~~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 623 YGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASG-LLSKTTGAIITVDGGNAA 677 (681)
T ss_pred ccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCc-cccCCcCCEEEECCCchh
Confidence 0011111122233445678999999999999864 356789999999999654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=243.34 Aligned_cols=245 Identities=27% Similarity=0.304 Sum_probs=197.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+++||||+||||++++++|+++|++|++++|+.+..++..++.. +.++..+.+|++++++++++++++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAV 81 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999877665544432 1256888999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC-cEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-SRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~IV 292 (429)
+.++++|+||||||...+ ....+.+++++++++|+.+++++++.+.+.+. ..+. ++|+
T Consensus 82 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~~vv 143 (264)
T PRK12829 82 ERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLK------------------ASGHGGVII 143 (264)
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCCeEEE
Confidence 999999999999998632 24567889999999999999999999999887 3333 7899
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------- 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------- 364 (429)
++||.++..+. ++...|+.+|++++.+++.++.++...++++++|+||++.|++......
T Consensus 144 ~~ss~~~~~~~------------~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~ 211 (264)
T PRK12829 144 ALSSVAGRLGY------------PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGI 211 (264)
T ss_pred EecccccccCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCC
Confidence 99988776553 5567899999999999999999998889999999999999987643211
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.............+..++.+++++|+++++++++. ...++|++|.+++|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 212 GLDEMEQEYLEKISLGRMVEPEDIAATALFLASPA-ARYITGQAISVDGNVE 262 (264)
T ss_pred ChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcc-ccCccCcEEEeCCCcc
Confidence 00011111222334446789999999999998543 4678999999999865
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=239.77 Aligned_cols=243 Identities=24% Similarity=0.287 Sum_probs=197.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||+++||++++++|+++|++|++++|+.+..+...+++... +.++..+++|+++.++++++++++.+.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999988877776665432 236888999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||..... ...+.+++++++++|+.|++.+++.+++.|. +.+.+++|++||..+
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~~~~v~~ss~~~ 140 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMK------------------KQGWGRIINIASAHG 140 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCeEEEEEcchhh
Confidence 99999999986432 4557788999999999999999999999987 445689999999877
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------CchhH-H
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YDSWL-S 370 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~~~~-~ 370 (429)
..+. +....|+.+|++++++++.++.++.+.||+++.++||.+.|++...... ..... .
T Consensus 141 ~~~~------------~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (255)
T TIGR01963 141 LVAS------------PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIR 208 (255)
T ss_pred cCCC------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHH
Confidence 6553 4567899999999999999999998889999999999999987532110 00001 0
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....+...+.+++|+|++++++++++ ...++|+++.+++|+..
T Consensus 209 ~~~~~~~~~~~~~~~~d~a~~~~~~~~~~-~~~~~g~~~~~~~g~~~ 254 (255)
T TIGR01963 209 EVMLPGQPTKRFVTVDEVAETALFLASDA-AAGITGQAIVLDGGWTA 254 (255)
T ss_pred HHHHccCccccCcCHHHHHHHHHHHcCcc-ccCccceEEEEcCcccc
Confidence 11111222334789999999999999764 45679999999998753
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=238.01 Aligned_cols=243 Identities=25% Similarity=0.339 Sum_probs=197.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|++|||||+|+||++++++|+++|++|+++.|+..+ .+...+.+... +.++.++.+|+++.++++++++++.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998887665543 34444444332 23678899999999999999999998
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|++|||||..... .+.+.++++..+++|+.+++++++.+.+++. +.+.+++|++|
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~~i~~S 142 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMR------------------KQRGGRIVNIS 142 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEEEC
Confidence 889999999999976443 3557889999999999999999999999987 44568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+..+. ++...|+.+|++++++++.++.++.+.|+++++++||.+.|++...... ...... ..
T Consensus 143 S~~~~~~~------------~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--~~~~~~-~~ 207 (249)
T PRK12825 143 SVAGLPGW------------PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE--EAREAK-DA 207 (249)
T ss_pred ccccCCCC------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc--hhHHhh-hc
Confidence 98876553 4577899999999999999999999899999999999999998765431 111111 11
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.....+++|+|+.+.++++.+ ...++|++|.++||...
T Consensus 208 ~~~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 208 ETPLGRSGTPEDIARAVAFLCSDA-SDYITGQVIEVTGGVDV 248 (249)
T ss_pred cCCCCCCcCHHHHHHHHHHHhCcc-ccCcCCCEEEeCCCEee
Confidence 234455789999999999999664 56789999999998653
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=246.49 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=176.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||+||||+++|++|+++|++|++++|+.++++...+ . .+.++.+|+++.++++++++++.+.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~----~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----A----GFTAVQLDVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----C----CCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 799999999999999999999999999999999876554321 1 35678999999999999999999999999
Q ss_pred eEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|++|||||.... ..+.+.++++..+++|+.|++.+++.++|.|. + ..|+||++||.++.
T Consensus 74 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~-~~g~iv~isS~~~~ 134 (274)
T PRK05693 74 DVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLR------------------R-SRGLVVNIGSVSGV 134 (274)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------h-cCCEEEEECCcccc
Confidence 999999997543 25568899999999999999999999999986 2 34899999998887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--------chhHH--
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--------DSWLS-- 370 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--------~~~~~-- 370 (429)
.+. +....|++||+++++++++++.|+++.||+|++|+||+|+|++.+..... .++..
T Consensus 135 ~~~------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 202 (274)
T PRK05693 135 LVT------------PFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLR 202 (274)
T ss_pred CCC------------CCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHH
Confidence 654 45778999999999999999999999999999999999999987653211 11110
Q ss_pred HHHHhHH--hhhccCCHHHHHHHHHHHhcCC
Q psy12836 371 TVVLKPL--VWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 371 ~~~~~~~--~~~~~~~peevA~~iv~l~~~~ 399 (429)
+.+.... ......+|+++|+.++..+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~ 233 (274)
T PRK05693 203 EHIQARARASQDNPTPAAEFARQLLAAVQQS 233 (274)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHhCC
Confidence 1111100 0122468999999999998654
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=241.12 Aligned_cols=189 Identities=31% Similarity=0.427 Sum_probs=168.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+..+|.|+|||+.+|+|+.+|++|.++|++|++.|-+++..+....+.. ..+...+++|++++++|+++.+.+.
T Consensus 24 ~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~ 99 (322)
T KOG1610|consen 24 LDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVK 99 (322)
T ss_pred ccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHH
Confidence 557889999999999999999999999999999999988877766655543 3477888999999999999999988
Q ss_pred HhCC--CeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 217 KENK--KINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 217 ~~~g--~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.+ .+..||||||+.. +.+..+.++++++++||++|++.+++.++|+++ +..|||
T Consensus 100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr-------------------~arGRv 160 (322)
T KOG1610|consen 100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLR-------------------RARGRV 160 (322)
T ss_pred HhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHH-------------------hccCeE
Confidence 8654 6999999999653 346678999999999999999999999999996 356999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCccc
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~ 360 (429)
|++||+.|..+. +...+|++||+|++.|+.+|++|+.+.||.|..|.||+.+|++..
T Consensus 161 VnvsS~~GR~~~------------p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 161 VNVSSVLGRVAL------------PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred EEecccccCccC------------cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence 999999998775 678899999999999999999999999999999999999999875
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=236.97 Aligned_cols=241 Identities=21% Similarity=0.238 Sum_probs=191.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++|++|||||+||||++++++|+++|++|++++|+. +..+...+.+....+ ..+.++.+|+++.++++++++++.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999864 445554444433222 35778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... ...+.++++.++++|+.|++++++++.+.+. + ..+.+++++|
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~-~~~~~~~~~~ 143 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLR------------------K-QRGAIVNITD 143 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHh------------------h-CCeEEEEEeC
Confidence 99999999999975432 4456788999999999999999999999885 2 3478888887
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+..+ +++..+|++||++++.+++.++.++.+ ++++++++||++.|++..... ...........
T Consensus 144 ~~~~~~------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~~~~v~pg~~~~~~~~~~~--~~~~~~~~~~~ 208 (249)
T PRK09135 144 IHAERP------------LKGYPVYCAAKAALEMLTRSLALELAP-EVRVNAVAPGAILWPEDGNSF--DEEARQAILAR 208 (249)
T ss_pred hhhcCC------------CCCchhHHHHHHHHHHHHHHHHHHHCC-CCeEEEEEeccccCccccccC--CHHHHHHHHhc
Confidence 554333 256789999999999999999999965 799999999999999854321 12222223333
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.....+++|+|+++.+++.+ ....+|+.+++++|...
T Consensus 209 ~~~~~~~~~~d~a~~~~~~~~~--~~~~~g~~~~i~~g~~~ 247 (249)
T PRK09135 209 TPLKRIGTPEDIAEAVRFLLAD--ASFITGQILAVDGGRSL 247 (249)
T ss_pred CCcCCCcCHHHHHHHHHHHcCc--cccccCcEEEECCCeec
Confidence 3445567899999999988864 34679999999998653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=237.85 Aligned_cols=211 Identities=24% Similarity=0.316 Sum_probs=179.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||++|||+++|++|+++|++|++++|+.++.++..+++... .+.++.++++|++++++++++++++.+ +
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 76 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPA---L 76 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhh---c
Confidence 478999999999999999999999999999999998887777766543 334788999999999999999998754 4
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++|||||..... .+.+.+++++.+++|+.+++++++.+.|.|. +.+.++||++||..+
T Consensus 77 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~sS~~~ 138 (243)
T PRK07102 77 PDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFE------------------ARGSGTIVGISSVAG 138 (243)
T ss_pred CCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hCCCCEEEEEecccc
Confidence 69999999976433 4567888999999999999999999999997 556789999999887
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++...|+++|+++++++++++.|+.+.||+|++|+||+++|++..... .+.
T Consensus 139 ~~~~------------~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~ 193 (243)
T PRK07102 139 DRGR------------ASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGLK-------------LPG 193 (243)
T ss_pred cCCC------------CCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhccC-------------CCc
Confidence 6654 456789999999999999999999999999999999999999765432 112
Q ss_pred hccCCHHHHHHHHHHHhcCC
Q psy12836 380 LFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~ 399 (429)
....+|+|+|+.++.++..+
T Consensus 194 ~~~~~~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 194 PLTAQPEEVAKDIFRAIEKG 213 (243)
T ss_pred cccCCHHHHHHHHHHHHhCC
Confidence 34679999999999999755
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=233.91 Aligned_cols=235 Identities=32% Similarity=0.451 Sum_probs=194.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+||||++++||.++|++|+++|++|++++|+. +.++...+.+... +.++..+.+|++|+++++++++++.+.++++|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999875 4444555555433 23578899999999999999999999999999
Q ss_pred EEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 224 VLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 224 ~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
++|||||..... ...+.++++..+++|+.+++.+++.+.+.+. +.+.+++|++||.++..
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~~v~~sS~~~~~ 140 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMI------------------KQRSGRIINISSVVGLM 140 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCeEEEEECCccccC
Confidence 999999986432 4557789999999999999999999999886 44568999999988877
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhc
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
+. ++...|+++|++++.+++.++.++...|+++++++||.+.|++..... +.....+....+..+
T Consensus 141 g~------------~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~---~~~~~~~~~~~~~~~ 205 (239)
T TIGR01830 141 GN------------AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLS---EKVKKKILSQIPLGR 205 (239)
T ss_pred CC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcC---hHHHHHHHhcCCcCC
Confidence 64 557889999999999999999999999999999999999998765432 222222333445567
Q ss_pred cCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 382 IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 382 ~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+++|+|+.+++++.++ ..+.+|+++++++|.
T Consensus 206 ~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~~~g~ 238 (239)
T TIGR01830 206 FGTPEEVANAVAFLASDE-ASYITGQVIHVDGGM 238 (239)
T ss_pred CcCHHHHHHHHHHHhCcc-cCCcCCCEEEeCCCc
Confidence 889999999999999654 457899999998874
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=237.56 Aligned_cols=225 Identities=23% Similarity=0.218 Sum_probs=198.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+.++||||++|||+++|..+..+|++|.++.|+.+++.++.+++........+.+..+|+.|.+++...++++.+..+.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 78999999999999999999999999999999999999999999877665568899999999999999999999999999
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|.+|||||..-++ .+.+.++++..+++|++|+++++++.++.|++ ....|+|+.+||..+.
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~-----------------~~~~g~I~~vsS~~a~ 176 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKK-----------------REHLGRIILVSSQLAM 176 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhc-----------------cccCcEEEEehhhhhh
Confidence 9999999987665 77899999999999999999999999999984 3346799999999998
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. .++++|++||+|+.+|+.++++|+.++||+|....|+.+.||.+.......|+....+....
T Consensus 177 ~~i------------~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~s--- 241 (331)
T KOG1210|consen 177 LGI------------YGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGS--- 241 (331)
T ss_pred cCc------------ccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchheeeecCCC---
Confidence 886 78999999999999999999999999999999999999999988776555555443332221
Q ss_pred ccCCHHHHHHHHHHHhcCC
Q psy12836 381 FIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~ 399 (429)
-..++||+|.+++.-+...
T Consensus 242 s~~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 242 SVIKCEEMAKAIVKGMKRG 260 (331)
T ss_pred CCcCHHHHHHHHHhHHhhc
Confidence 2468999999999776443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=233.18 Aligned_cols=236 Identities=22% Similarity=0.196 Sum_probs=192.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++||||++|||.++++.|+++|++|++++|+.++++...+++... .++..+++|+++.++++++++++.+.
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998877665555332 25788899999999999999999888
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++++|.+|+|+|........+.++++.++++|+.+++.+.+.++|.+. + .+++|++||..
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~--~~~iv~~ss~~ 138 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLK------------------E--GSSIVLVSSMS 138 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHh------------------c--CCEEEEEecch
Confidence 899999999999754333334488999999999999999999999886 2 47999999987
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. .++...|++||++++.+++.++.++...||++++|+||++.|++..... . ... ...
T Consensus 139 ~~~~~-----------~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~~-----~-~~~-~~~- 199 (238)
T PRK05786 139 GIYKA-----------SPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPERN-----W-KKL-RKL- 199 (238)
T ss_pred hcccC-----------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchhh-----h-hhh-ccc-
Confidence 64321 1456789999999999999999999999999999999999998742211 0 100 111
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.....+++++|+.++++++++ ...++|+++.++|+..+
T Consensus 200 ~~~~~~~~~va~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 237 (238)
T PRK05786 200 GDDMAPPEDFAKVIIWLLTDE-ADWVDGVVIPVDGGARL 237 (238)
T ss_pred cCCCCCHHHHHHHHHHHhccc-ccCccCCEEEECCcccc
Confidence 123578999999999999764 56789999999988765
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=238.47 Aligned_cols=223 Identities=20% Similarity=0.279 Sum_probs=179.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.|++|||||+||||+++|++|+++|++|++++|+.+.+++..+.. ..++.++++|++|.++++++++++.+.+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999987766544432 135788899999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|+ +.+.++||++||..+
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~iv~~sS~~~ 138 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLR------------------RQGGGRIVQVSSEGG 138 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEEEEcCccc
Confidence 99999999986543 4557789999999999999999999999997 456689999999876
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC------chhHHHHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY------DSWLSTVV 373 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~------~~~~~~~~ 373 (429)
..+. ++...|++||++++++++.++.++.+.||+++.++||.+.|++.+..... .......+
T Consensus 139 ~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~ 206 (276)
T PRK06482 139 QIAY------------PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDL 206 (276)
T ss_pred ccCC------------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHH
Confidence 5443 56789999999999999999999999999999999999999875433210 00001111
Q ss_pred HhHH---hhhccCCHHHHHHHHHHHhcCC
Q psy12836 374 LKPL---VWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 374 ~~~~---~~~~~~~peevA~~iv~l~~~~ 399 (429)
...+ ......+|++++++++.++..+
T Consensus 207 ~~~~~~~~~~~~~d~~~~~~a~~~~~~~~ 235 (276)
T PRK06482 207 RRALADGSFAIPGDPQKMVQAMIASADQT 235 (276)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHcCC
Confidence 1111 1112368999999999998654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=235.64 Aligned_cols=223 Identities=21% Similarity=0.227 Sum_probs=174.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH-HHHhC--
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE-VKKEN-- 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~-i~~~~-- 219 (429)
++++||||+||||+++|++|+++|++|++++|+.++.. .. ..+.++.++++|+++.+++++++++ +.+.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~------~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL------AA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVD 74 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh------hh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999999999999865421 11 1234688899999999999998877 55544
Q ss_pred -CCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 220 -KKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 220 -g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++|++|||||...+ ..+.+.++++..+++|+.+++.+++.+.+.|. ++..++||++|
T Consensus 75 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~is 136 (243)
T PRK07023 75 GASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAAS------------------DAAERRILHIS 136 (243)
T ss_pred CCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhh------------------ccCCCEEEEEe
Confidence 479999999998643 24567899999999999999999999999987 45678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc---hhHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD---SWLSTV 372 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~---~~~~~~ 372 (429)
|..+..+. ++...|+++|++++++++.++.+ .+.||++++|+||+++|++........ ......
T Consensus 137 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~ 203 (243)
T PRK07023 137 SGAARNAY------------AGWSVYCATKAALDHHARAVALD-ANRALRIVSLAPGVVDTGMQATIRATDEERFPMRER 203 (243)
T ss_pred ChhhcCCC------------CCchHHHHHHHHHHHHHHHHHhc-CCCCcEEEEecCCccccHHHHHHHhcccccchHHHH
Confidence 98876553 56789999999999999999999 788999999999999999854321100 011122
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLEN 403 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~ 403 (429)
+....+.++..+|+|+|+.++..+.++....
T Consensus 204 ~~~~~~~~~~~~~~~va~~~~~~l~~~~~~~ 234 (243)
T PRK07023 204 FRELKASGALSTPEDAARRLIAYLLSDDFGS 234 (243)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhccccCC
Confidence 3333445678899999996655444554443
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=237.88 Aligned_cols=223 Identities=29% Similarity=0.343 Sum_probs=183.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||+||||+++++.|+++|++|++++|+.++.++..+++... +.++.++.+|++|.++++++++++.+++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999988877776666543 236788899999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCC-CHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCR--KML-TEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|++|||||..... .+. +.+++++.+++|+.+++.+++.+.++|. + ..++||++||..
T Consensus 79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~-~~~~iv~~sS~~ 139 (263)
T PRK06181 79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLK------------------A-SRGQIVVVSSLA 139 (263)
T ss_pred CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------h-cCCEEEEEeccc
Confidence 99999999976533 344 7788999999999999999999999886 2 348999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++...|++||++++++++.++.++.+.||+++++.||.+.|++.+.......... ...+..
T Consensus 140 ~~~~~------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~--~~~~~~ 205 (263)
T PRK06181 140 GLTGV------------PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDGDGKPL--GKSPMQ 205 (263)
T ss_pred ccCCC------------CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcccccccc--cccccc
Confidence 76654 5678999999999999999999999999999999999999998754321100000 001111
Q ss_pred hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~ 399 (429)
...+.+|+|+|+++++++...
T Consensus 206 ~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 206 ESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred ccCCCCHHHHHHHHHHHhhCC
Confidence 235789999999999999653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=269.52 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=185.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.... .++.++++|++|.++++++++++.+
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999998888877775432 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CC--CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR--KM--LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~--~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+|++|++|||||..... .. ...++++.++++|+.|++++++.++|.|+ +++.|+||+
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 506 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMR------------------ERRFGHVVN 506 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hcCCCEEEE
Confidence 999999999999975332 11 12578999999999999999999999997 556789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+++++|+++++.|+++.||+||+|+||+|+|+|...... .
T Consensus 507 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~----~---- 566 (657)
T PRK07201 507 VSSIGVQTNA------------PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR----Y---- 566 (657)
T ss_pred ECChhhcCCC------------CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc----c----
Confidence 9999887654 5577899999999999999999999999999999999999998754321 0
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcC
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~ 398 (429)
. .....+|+++|+.++..+..
T Consensus 567 -~---~~~~~~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 567 -N---NVPTISPEEAADMVVRAIVE 587 (657)
T ss_pred -c---CCCCCCHHHHHHHHHHHHHh
Confidence 0 12356899999999987743
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=229.33 Aligned_cols=195 Identities=22% Similarity=0.256 Sum_probs=163.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||++|||+++|++|+++ ++|++++|+.. .++||+++.+++++++++ ++++|
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~----~~~id 57 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEK----VGKVD 57 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHh----cCCCC
Confidence 6999999999999999999999 99999999753 258999999999998875 47899
Q ss_pred EEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 224 VLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 224 ~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
++|||||..... .+.+.++|++.+++|+.+++++++.+.|.|. +.|+|+++||..+..
T Consensus 58 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--------------------~~g~iv~iss~~~~~ 117 (199)
T PRK07578 58 AVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLN--------------------DGGSFTLTSGILSDE 117 (199)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------cCCeEEEEcccccCC
Confidence 999999975432 4568889999999999999999999999986 248999999988766
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhc
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
+. ++..+|++||+|+++|+++++.|+ ++||+||+|+||+++|++..... ..+...
T Consensus 118 ~~------------~~~~~Y~~sK~a~~~~~~~la~e~-~~gi~v~~i~Pg~v~t~~~~~~~------------~~~~~~ 172 (199)
T PRK07578 118 PI------------PGGASAATVNGALEGFVKAAALEL-PRGIRINVVSPTVLTESLEKYGP------------FFPGFE 172 (199)
T ss_pred CC------------CCchHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEcCCcccCchhhhhh------------cCCCCC
Confidence 54 567899999999999999999999 88999999999999998642111 011123
Q ss_pred cCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 382 IKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 382 ~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
..+|+|+|+.++.+++. ..+|+.|.+
T Consensus 173 ~~~~~~~a~~~~~~~~~----~~~g~~~~~ 198 (199)
T PRK07578 173 PVPAARVALAYVRSVEG----AQTGEVYKV 198 (199)
T ss_pred CCCHHHHHHHHHHHhcc----ceeeEEecc
Confidence 56899999999999853 468988764
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=234.79 Aligned_cols=211 Identities=31% Similarity=0.354 Sum_probs=179.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
-.|++++||||+.|||++.|++||++|.+|++++|+.+|++..+++|...++ ..+.++.+|.++.+.+-+-+.+..+ .
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~-~ 124 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLA-G 124 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhc-C
Confidence 3469999999999999999999999999999999999999999999998887 7899999999988763333332222 2
Q ss_pred CCeeEEEEccccCCC--C--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 220 KKINVLINNAGVSGC--R--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 220 g~iD~lI~nAG~~~~--~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
..|.+||||+|+... . .+.+.+.+++.+.+|.++...+++.++|.|. ++++|-|||+|
T Consensus 125 ~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~------------------~r~~G~Ivnig 186 (312)
T KOG1014|consen 125 LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMV------------------ERKKGIIVNIG 186 (312)
T ss_pred CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhh------------------cCCCceEEEec
Confidence 378899999999762 2 3445568899999999999999999999998 77889999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. +.++.|++||+.+..|+++|+.|+..+||.|.+|.|++|.|+|.....
T Consensus 187 S~ag~~p~------------p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~~------------ 242 (312)
T KOG1014|consen 187 SFAGLIPT------------PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYRK------------ 242 (312)
T ss_pred cccccccC------------hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccccCC------------
Confidence 99998876 678999999999999999999999999999999999999999976543
Q ss_pred HHhhhccCCHHHHHHHHHHHh
Q psy12836 376 PLVWLFIKSPRQGAQTIVYAS 396 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~ 396 (429)
+..+..+|+.-|...+.-.
T Consensus 243 --~sl~~ps~~tfaksal~ti 261 (312)
T KOG1014|consen 243 --PSLFVPSPETFAKSALNTI 261 (312)
T ss_pred --CCCcCcCHHHHHHHHHhhc
Confidence 1134557787777777666
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=233.10 Aligned_cols=203 Identities=25% Similarity=0.301 Sum_probs=169.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||+++|++|+++|++|++++|+.+++++..++ . .++.+++||+++.++++++++++.. .+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 72 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S--ANIFTLAFDVTDHPGTKAALSQLPF---IP 72 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c--CCCeEEEeeCCCHHHHHHHHHhccc---CC
Confidence 7899999999999999999999999999999998776654432 1 2577889999999999999987642 47
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|.+|+|||..... ...+.+++++++++|+.|++++++.+.|+|. +.++||++||.++.
T Consensus 73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--------------------~~~~iv~isS~~~~ 132 (240)
T PRK06101 73 ELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLS--------------------CGHRVVIVGSIASE 132 (240)
T ss_pred CEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------cCCeEEEEechhhc
Confidence 9999999965322 3468889999999999999999999999885 24689999998877
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++...|++||++++++++.++.|+.++||++++|+||.+.|++...... .. .
T Consensus 133 ~~~------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~-----------~~--~ 187 (240)
T PRK06101 133 LAL------------PRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF-----------AM--P 187 (240)
T ss_pred cCC------------CCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC-----------CC--C
Confidence 654 5677899999999999999999999999999999999999998654321 00 1
Q ss_pred ccCCHHHHHHHHHHHhcCC
Q psy12836 381 FIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~ 399 (429)
...+|+++|+.++..+...
T Consensus 188 ~~~~~~~~a~~i~~~i~~~ 206 (240)
T PRK06101 188 MIITVEQASQEIRAQLARG 206 (240)
T ss_pred cccCHHHHHHHHHHHHhcC
Confidence 2458999999999888554
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=222.46 Aligned_cols=183 Identities=30% Similarity=0.316 Sum_probs=162.5
Q ss_pred CCCEEEEEcCC-CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH-h
Q psy12836 141 RGKIVIVTGAN-TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK-E 218 (429)
Q Consensus 141 ~gK~vLITGas-sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~-~ 218 (429)
+-|.|+|||++ ||||.++|++|+++|+.|+.++|..+....+..+. .+...++|+++++++..+..++.+ .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhCC
Confidence 45889999887 79999999999999999999999988877665442 477889999999999999999988 7
Q ss_pred CCCeeEEEEccccCC--CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSG--CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+|+||||..- |..+.+.++.++.|++|++|++++++++...+. +.+|.|||++|
T Consensus 79 ~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~li-------------------kaKGtIVnvgS 139 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLI-------------------KAKGTIVNVGS 139 (289)
T ss_pred CCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHH-------------------HccceEEEecc
Confidence 899999999999853 446778899999999999999999999995554 36799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
..+..+- +..+.|++||+|+..+++.|+.|+++.||+|..+-||.|.|++...
T Consensus 140 l~~~vpf------------pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 140 LAGVVPF------------PFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIADK 192 (289)
T ss_pred eeEEecc------------chhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence 9988763 6678999999999999999999999999999999999999998654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=225.39 Aligned_cols=216 Identities=29% Similarity=0.350 Sum_probs=183.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.+|+++||||+|+||++++++|+++|++|++++|+.+++.+..+++... .++..+++|+++.++++++++++.+.
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998888777776543 36888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||..... .+.+.+++++++++|+.+++.+++++++.|. + ..++||++||
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~-~~~~iv~~ss 140 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALK------------------R-GGGYIINISS 140 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHH------------------H-CCeEEEEECC
Confidence 99999999999976432 4567889999999999999999999999884 2 3489999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. .+...|+++|+++.++++.++.|+...|+++++|+||.+.|++...... . .
T Consensus 141 ~~~~~~~------------~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~--~---~----- 198 (237)
T PRK07326 141 LAGTNFF------------AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS--E---K----- 198 (237)
T ss_pred hhhccCC------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc--h---h-----
Confidence 8775543 4567899999999999999999999999999999999999987654321 0 0
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
. ....+++|+|+.+++++..+.
T Consensus 199 ~--~~~~~~~d~a~~~~~~l~~~~ 220 (237)
T PRK07326 199 D--AWKIQPEDIAQLVLDLLKMPP 220 (237)
T ss_pred h--hccCCHHHHHHHHHHHHhCCc
Confidence 0 113589999999999998774
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=216.12 Aligned_cols=247 Identities=19% Similarity=0.180 Sum_probs=207.5
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..|+||++||+|-. ..|+..||+.|.++|+++.++..++ ++++-.+++.+..+ ...+++||+++.++++++++++
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~--s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELG--SDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhcc--CCeEEecCCCCHHHHHHHHHHH
Confidence 36899999999987 6999999999999999999999887 66666666655444 2567899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 216 KKENKKINVLINNAGVSGCR------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.+++|++|.|||+-|..... .+.+.|+|...+++...+...+.+++.|.|. .+|
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~--------------------~gg 138 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN--------------------NGG 138 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC--------------------CCC
Confidence 99999999999999986422 4468899999999999999999999999996 478
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||-++=..+.+.. |.+...+.+|++++.-+|.||.+++++|||||+|+-|+|+|=-......... +
T Consensus 139 SiltLtYlgs~r~v------------PnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~-~ 205 (259)
T COG0623 139 SILTLTYLGSERVV------------PNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRK-M 205 (259)
T ss_pred cEEEEEeccceeec------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHH-H
Confidence 99998876665554 4567899999999999999999999999999999999999966555443222 2
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.......-|+++..++|||+++.+||+|+ -++.+||+.+.+|.|+......
T Consensus 206 l~~~e~~aPl~r~vt~eeVG~tA~fLlSd-LssgiTGei~yVD~G~~i~~m~ 256 (259)
T COG0623 206 LKENEANAPLRRNVTIEEVGNTAAFLLSD-LSSGITGEIIYVDSGYHIMGMG 256 (259)
T ss_pred HHHHHhhCCccCCCCHHHhhhhHHHHhcc-hhcccccceEEEcCCceeeccC
Confidence 23344566778999999999999999976 4789999999999998876543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=220.01 Aligned_cols=202 Identities=21% Similarity=0.243 Sum_probs=164.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||+++|++|+++|++|++++|+.++.++.. ++ ..+.+..+|++|.++++++++++.+ +++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~d~~~~~~~~~~~~~--~~i 72 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-AL------PGVHIEKLDMNDPASLDQLLQRLQG--QRF 72 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hc------cccceEEcCCCCHHHHHHHHHHhhc--CCC
Confidence 78999999999999999999999999999999987654432 11 1456778999999999999998853 589
Q ss_pred eEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 223 NVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 223 D~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
|++|||||...+ ..+.+.++++..+++|+.+++.+++.+++.+. . ..++|+++||..
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~-~~~~iv~~ss~~ 133 (225)
T PRK08177 73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVR------------------P-GQGVLAFMSSQL 133 (225)
T ss_pred CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhh------------------h-cCCEEEEEccCc
Confidence 999999998643 24567899999999999999999999999885 2 347999999976
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+.. ...+...|+++|+++++|++.++.|++++||+||+|+||+++|++.....
T Consensus 134 g~~~~~---------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~~~~--------------- 189 (225)
T PRK08177 134 GSVELP---------DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGGDNA--------------- 189 (225)
T ss_pred cccccC---------CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCCCCCC---------------
Confidence 654321 11345689999999999999999999999999999999999999865321
Q ss_pred hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~ 399 (429)
..++++.++.++..+...
T Consensus 190 ---~~~~~~~~~~~~~~~~~~ 207 (225)
T PRK08177 190 ---PLDVETSVKGLVEQIEAA 207 (225)
T ss_pred ---CCCHHHHHHHHHHHHHhC
Confidence 135777777777776443
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=222.64 Aligned_cols=219 Identities=23% Similarity=0.259 Sum_probs=172.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||+||||++++++|+++|++|++++|+.+..++..+...... ..+.++.+|+++.++++++++ ++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~------~~ 73 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAE------WD 73 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhc------CC
Confidence 6799999999999999999999999999999999877766655443332 357888999999998877653 37
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||..... .+.+.++++..+++|+.+++.+++.+++.+. +.+.++||++||..+
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~~SS~~~ 135 (257)
T PRK09291 74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMV------------------ARGKGKVVFTSSMAG 135 (257)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCceEEEEcChhh
Confidence 99999999986433 5678899999999999999999999999987 445589999999887
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-CchhHH--HHHHh-
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-YDSWLS--TVVLK- 375 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~--~~~~~- 375 (429)
..+. ++..+|++||++++++++.++.++.+.||++++|+||++.|++...... ...+.. .....
T Consensus 136 ~~~~------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
T PRK09291 136 LITG------------PFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDP 203 (257)
T ss_pred ccCC------------CCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhh
Confidence 6553 4577899999999999999999999999999999999999987543211 001100 00000
Q ss_pred ---HHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 376 ---PLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 376 ---~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
..+ ....+++++++.++.++.++
T Consensus 204 ~~~~~~-~~~~~~~~~~~~~~~~l~~~ 229 (257)
T PRK09291 204 EDLAFP-LEQFDPQEMIDAMVEVIPAD 229 (257)
T ss_pred hhhhcc-ccCCCHHHHHHHHHHHhcCC
Confidence 111 12358999999999888654
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=227.94 Aligned_cols=214 Identities=26% Similarity=0.231 Sum_probs=165.1
Q ss_pred HHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeEEEEccccCCCCCC
Q psy12836 158 IARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM 237 (429)
Q Consensus 158 iA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~ 237 (429)
+|++|+++|++|++++|+.++.+ + ..++++|++|.++++++++++. +++|+||||||...
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~--------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~---- 60 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-----L--------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG---- 60 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-----h--------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC----
Confidence 47899999999999999876542 1 1346899999999999998874 68999999999753
Q ss_pred CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcc---c------
Q psy12836 238 LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKE---D------ 308 (429)
Q Consensus 238 ~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~---~------ 308 (429)
.++++.++++|+.+++++++.++|+|. + .|+||++||.++........ +
T Consensus 61 --~~~~~~~~~vN~~~~~~l~~~~~~~~~------------------~--~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~ 118 (241)
T PRK12428 61 --TAPVELVARVNFLGLRHLTEALLPRMA------------------P--GGAIVNVASLAGAEWPQRLELHKALAATAS 118 (241)
T ss_pred --CCCHHHhhhhchHHHHHHHHHHHHhcc------------------C--CcEEEEeCcHHhhccccchHHHHhhhccch
Confidence 135889999999999999999999885 2 38999999998764210000 0
Q ss_pred CC------CCCCCCCcchhHHHHHHHHHHHHHHH-HHhcCCCeEEEEEeCCCccCCcccCCCCCc-hhHHHHHHhHHhhh
Q psy12836 309 LN------SENSYDPTQAYNQSKLANVLFTRELA-KRLEGTGITVNAVHPGIVNTDILRHSSYYD-SWLSTVVLKPLVWL 380 (429)
Q Consensus 309 l~------~~~~~~~~~~Y~aSKaal~~l~~~la-~el~~~gIrVn~V~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~~~ 380 (429)
.. .....++..+|++||+|++++++.++ .|++++||+||+|+||.+.|+|.+...... +.... ....+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~~~~ 196 (241)
T PRK12428 119 FDEGAAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVD--SDAKRMG 196 (241)
T ss_pred HHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhh--hcccccC
Confidence 00 00234567899999999999999999 999999999999999999999976532110 00101 1123456
Q ss_pred ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 381 FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
++.+|+|+|++++|+++++ ..+++|+.+.+|||..
T Consensus 197 ~~~~pe~va~~~~~l~s~~-~~~~~G~~i~vdgg~~ 231 (241)
T PRK12428 197 RPATADEQAAVLVFLCSDA-ARWINGVNLPVDGGLA 231 (241)
T ss_pred CCCCHHHHHHHHHHHcChh-hcCccCcEEEecCchH
Confidence 7889999999999999654 6789999999999965
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=211.24 Aligned_cols=161 Identities=41% Similarity=0.564 Sum_probs=145.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC--hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRD--LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-~Vil~~R~--~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|||||++|||+++|++|+++|+ +|++++|+ .+..++..+++.... .++.++++|+++.++++++++++.+.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 7999999999999999999999965 78888998 677777777776433 589999999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|++|||||..... .+.+.++++++|++|+.+++++.+.++| . +.|+||++||.
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~--------------------~~g~iv~~sS~ 136 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--Q--------------------GGGKIVNISSI 136 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--H--------------------TTEEEEEEEEG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee--c--------------------cccceEEecch
Confidence 9999999999998643 5567899999999999999999999998 3 46999999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL 339 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el 339 (429)
++..+. ++..+|++||+|+++|+++|+.|+
T Consensus 137 ~~~~~~------------~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 137 AGVRGS------------PGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp GGTSSS------------TTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCC------------CCChhHHHHHHHHHHHHHHHHHhc
Confidence 998876 778999999999999999999996
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=218.77 Aligned_cols=203 Identities=30% Similarity=0.355 Sum_probs=171.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++++|+++||||+||||+++|++|+++|+ +|++++|+.+++++ .+..+.++.+|+++.+++++++++
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~-- 70 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA-- 70 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh--
Confidence 457899999999999999999999999999 99999999876543 123678899999999999887765
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++|++|||||.... ....+.++++..+++|+.+++.+++.+.+.+. +.+.+++|+
T Consensus 71 --~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~~v~ 130 (238)
T PRK08264 71 --ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLA------------------ANGGGAIVN 130 (238)
T ss_pred --cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEEE
Confidence 4689999999998322 25568899999999999999999999999987 456789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+. ++...|+++|++++++++.++.++.+.|+++++++||.++|++.....
T Consensus 131 ~sS~~~~~~~------------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~~---------- 188 (238)
T PRK08264 131 VLSVLSWVNF------------PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGLD---------- 188 (238)
T ss_pred EcChhhccCC------------CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccCC----------
Confidence 9998876553 557789999999999999999999999999999999999999854432
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
....+++++|+.++..+...
T Consensus 189 ------~~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 189 ------APKASPADVARQILDALEAG 208 (238)
T ss_pred ------cCCCCHHHHHHHHHHHHhCC
Confidence 11457889999998887543
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=221.36 Aligned_cols=202 Identities=22% Similarity=0.202 Sum_probs=151.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
...++||+++||||++|||+++|++|+++|++|++++|+.....+. . ... ....+.+|+++.+++++
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~--~--~~~---~~~~~~~D~~~~~~~~~------ 75 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSES--N--DES---PNEWIKWECGKEESLDK------ 75 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhh--h--ccC---CCeEEEeeCCCHHHHHH------
Confidence 4567899999999999999999999999999999999986322111 1 111 12567899999987753
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.++++|++|||||.... ...+.+++++++++|+.|++++++.++|.|.++. ...++.+++.||
T Consensus 76 -~~~~iDilVnnAG~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~---------------~~~g~~iiv~ss 138 (245)
T PRK12367 76 -QLASLDVLILNHGINPG-GRQDPENINKALEINALSSWRLLELFEDIALNNN---------------SQIPKEIWVNTS 138 (245)
T ss_pred -hcCCCCEEEECCccCCc-CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc---------------cCCCeEEEEEec
Confidence 35789999999997533 3467899999999999999999999999997310 012334444455
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHH---HHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLF---TRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l---~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
.++..+ ++..+|++||+|+..+ .+.++.|+.+.|++|++++||+++|++..
T Consensus 139 ~a~~~~-------------~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~------------- 192 (245)
T PRK12367 139 EAEIQP-------------ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELNP------------- 192 (245)
T ss_pred ccccCC-------------CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccCc-------------
Confidence 544322 2356799999998644 45555566789999999999999998621
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
....+|+++|+.+++++...+
T Consensus 193 ------~~~~~~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 193 ------IGIMSADFVAKQILDQANLGL 213 (245)
T ss_pred ------cCCCCHHHHHHHHHHHHhcCC
Confidence 124589999999999996553
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=218.50 Aligned_cols=219 Identities=29% Similarity=0.340 Sum_probs=175.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC-CC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN-KK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~-g~ 221 (429)
|+++||||+||||+++|+.|+++|++|++++|+.++++...+ . .+..+++|+++.++++.+++++.+.. ++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~----~----~~~~~~~D~~~~~~~~~~~~~i~~~~~~~ 74 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS----L----GFTGILLDLDDPESVERAADEVIALTDNR 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh----C----CCeEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999999877654321 1 35678999999999999999987643 68
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|.+|||||.... ..+.+.+++++.+++|+.|++++++.+++.|. +.+.++||++||..+
T Consensus 75 ~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~~~iv~~ss~~~ 136 (256)
T PRK08017 75 LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAML------------------PHGEGRIVMTSSVMG 136 (256)
T ss_pred CeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh------------------hcCCCEEEEEcCccc
Confidence 9999999997543 24568889999999999999999999999997 455689999999877
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++...|++||++++.++++++.++.+.|+++++|+||.+.|++........... .........
T Consensus 137 ~~~~------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~-~~~~~~~~~ 203 (256)
T PRK08017 137 LIST------------PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDK-PVENPGIAA 203 (256)
T ss_pred ccCC------------CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccchhhcc-chhhhHHHh
Confidence 6554 557789999999999999999999999999999999999998765432110000 000011111
Q ss_pred hccCCHHHHHHHHHHHhcCCC
Q psy12836 380 LFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~ 400 (429)
....+|+|+|+.++.++..+.
T Consensus 204 ~~~~~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 204 RFTLGPEAVVPKLRHALESPK 224 (256)
T ss_pred hcCCCHHHHHHHHHHHHhCCC
Confidence 235799999999999997653
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=210.78 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=171.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||++|||++++++|+++|++|++++|+.++.++... . .+.++++|+++.++++++++++.. +++
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~----~----~~~~~~~D~~~~~~v~~~~~~~~~--~~~ 71 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA----L----GAEALALDVADPASVAGLAWKLDG--EAL 71 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh----c----cceEEEecCCCHHHHHHHHHHhcC--CCC
Confidence 689999999999999999999999999999999876654322 1 245789999999999998877642 479
Q ss_pred eEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 223 NVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 223 D~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
|++|||||.... ....+.++++..+++|+.+++.+++.+.|.|. + ..|++|++||..
T Consensus 72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~-~~g~iv~isS~~ 132 (222)
T PRK06953 72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVE------------------A-AGGVLAVLSSRM 132 (222)
T ss_pred CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhh------------------c-cCCeEEEEcCcc
Confidence 999999998632 23558899999999999999999999999885 2 358999999987
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+... ..+...|+++|++++++++.++.++. +++||+|+||+++|++.++..
T Consensus 133 ~~~~~~~---------~~~~~~Y~~sK~a~~~~~~~~~~~~~--~i~v~~v~Pg~i~t~~~~~~~--------------- 186 (222)
T PRK06953 133 GSIGDAT---------GTTGWLYRASKAALNDALRAASLQAR--HATCIALHPGWVRTDMGGAQA--------------- 186 (222)
T ss_pred ccccccc---------CCCccccHHhHHHHHHHHHHHhhhcc--CcEEEEECCCeeecCCCCCCC---------------
Confidence 7655311 01223699999999999999999863 699999999999999865321
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..++++.++.++.++... ....+|.+|..++.
T Consensus 187 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 218 (222)
T PRK06953 187 ---ALDPAQSVAGMRRVIAQA-TRRDNGRFFQYDGV 218 (222)
T ss_pred ---CCCHHHHHHHHHHHHHhc-CcccCceEEeeCCc
Confidence 247899999999876554 35778999987654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=202.84 Aligned_cols=217 Identities=27% Similarity=0.310 Sum_probs=172.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||+|+||+++++.|+++ ++|++++|+.++.++..++. ..+.++++|++|.++++++++++ ++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~----~~ 71 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVEQL----GR 71 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHHhc----CC
Confidence 589999999999999999999999 99999999987665443322 14677899999999998887754 57
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|++||+||..... ...+.+++.+++++|+.+++.+++.+++.++ + ..+++|++||..+
T Consensus 72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~-~~~~~v~~ss~~~ 132 (227)
T PRK08219 72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALR------------------A-AHGHVVFINSGAG 132 (227)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------h-CCCeEEEEcchHh
Confidence 99999999986432 4567889999999999999999999999886 2 2479999999887
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++...|+.+|++++++++.++.++... |++++|+||.+.|++....... .....+.
T Consensus 133 ~~~~------------~~~~~y~~~K~a~~~~~~~~~~~~~~~-i~~~~i~pg~~~~~~~~~~~~~-------~~~~~~~ 192 (227)
T PRK08219 133 LRAN------------PGWGSYAASKFALRALADALREEEPGN-VRVTSVHPGRTDTDMQRGLVAQ-------EGGEYDP 192 (227)
T ss_pred cCcC------------CCCchHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCCccchHhhhhhhh-------hccccCC
Confidence 6553 457789999999999999999988766 9999999999988865432210 0011122
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
..+.+++|+|++++++++.+. .|.+++..
T Consensus 193 ~~~~~~~dva~~~~~~l~~~~----~~~~~~~~ 221 (227)
T PRK08219 193 ERYLRPETVAKAVRFAVDAPP----DAHITEVV 221 (227)
T ss_pred CCCCCHHHHHHHHHHHHcCCC----CCccceEE
Confidence 356899999999999997653 35555443
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=203.57 Aligned_cols=236 Identities=20% Similarity=0.201 Sum_probs=179.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|++|+||+|.|||..++..+.+++-.....+++....+ .+.++...+ ........|++......++.+..++++|
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~g 81 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGG 81 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCC
Confidence 4689999999999999988888887754333333222111 111222222 2333445678888888899999999999
Q ss_pred CeeEEEEccccCCCC-----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC-CCcEEEEE
Q psy12836 221 KINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES-APSRIINV 294 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~-----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~IV~v 294 (429)
..|++|||||..++- +..+.++|++.+++|+++.+.+.+.++|.++ ++ ..+.+||+
T Consensus 82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk------------------~~p~~~~vVnv 143 (253)
T KOG1204|consen 82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLK------------------KSPVNGNVVNV 143 (253)
T ss_pred ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhc------------------CCCccCeEEEe
Confidence 999999999987653 3567899999999999999999999999997 33 36999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~ 371 (429)
||.++..+. .++++||++|+|.++|.+.||.|=. .+|+|.+++||.++|+|...... ..+....
T Consensus 144 SS~aav~p~------------~~wa~yc~~KaAr~m~f~~lA~EEp-~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~ 210 (253)
T KOG1204|consen 144 SSLAAVRPF------------SSWAAYCSSKAARNMYFMVLASEEP-FDVRVLNYAPGVVDTQMQVCIRETSRMTPADLK 210 (253)
T ss_pred cchhhhccc------------cHHHHhhhhHHHHHHHHHHHhhcCc-cceeEEEccCCcccchhHHHHhhccCCCHHHHH
Confidence 999998774 7899999999999999999999855 79999999999999999754321 2233333
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
.+.+-...+.+.+|...|+.+..|+... .+++|+++...
T Consensus 211 ~f~el~~~~~ll~~~~~a~~l~~L~e~~--~f~sG~~vdy~ 249 (253)
T KOG1204|consen 211 MFKELKESGQLLDPQVTAKVLAKLLEKG--DFVSGQHVDYY 249 (253)
T ss_pred HHHHHHhcCCcCChhhHHHHHHHHHHhc--Ccccccccccc
Confidence 3333334467899999999999999554 28899986543
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=211.46 Aligned_cols=200 Identities=23% Similarity=0.227 Sum_probs=151.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||+||||+++|++|+++|++|++++|+.+++++... .. ...+..+.+|++|.+++.+.
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~---~~--~~~v~~v~~Dvsd~~~v~~~------ 242 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN---GE--DLPVKTLHWQVGQEAALAEL------ 242 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hc--CCCeEEEEeeCCCHHHHHHH------
Confidence 46789999999999999999999999999999999998876543221 11 12456788999999887654
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++++|++|||||.... .+.+.+++++++++|+.|++.+++.++|.|+++.. ...++.+|++||
T Consensus 243 -l~~IDiLInnAGi~~~-~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~--------------~~~~~iiVn~Ss- 305 (406)
T PRK07424 243 -LEKVDILIINHGINVH-GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRD--------------KATKEVWVNTSE- 305 (406)
T ss_pred -hCCCCEEEECCCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CCCCeEEEEEcc-
Confidence 3579999999998643 35688899999999999999999999999974210 112345666654
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
++. .. +....|++||+|+.+++. ++++. .++.|..+.||+++|++..
T Consensus 306 a~~-~~------------~~~~~Y~ASKaAl~~l~~-l~~~~--~~~~I~~i~~gp~~t~~~~----------------- 352 (406)
T PRK07424 306 AEV-NP------------AFSPLYELSKRALGDLVT-LRRLD--APCVVRKLILGPFKSNLNP----------------- 352 (406)
T ss_pred ccc-cC------------CCchHHHHHHHHHHHHHH-HHHhC--CCCceEEEEeCCCcCCCCc-----------------
Confidence 332 11 235679999999999984 55443 4577788899999888631
Q ss_pred hhhccCCHHHHHHHHHHHhcCCC
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~ 400 (429)
....+||++|+.+++++..++
T Consensus 353 --~~~~spe~vA~~il~~i~~~~ 373 (406)
T PRK07424 353 --IGVMSADWVAKQILKLAKRDF 373 (406)
T ss_pred --CCCCCHHHHHHHHHHHHHCCC
Confidence 023589999999999996653
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=195.01 Aligned_cols=236 Identities=21% Similarity=0.302 Sum_probs=188.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC-----CEEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK-----AKVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G-----~~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.|+++|||++||||+++|++|++.. .+++++||+.++++++...+.+.++ ...+.++.+|+++..++.++..+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 5899999999999999999999864 3689999999999999999998887 45788999999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCCC-----------------------------CCCHHHHHhhhcchhHHHHHHHHHHHHHH
Q psy12836 215 VKKENKKINVLINNAGVSGCRK-----------------------------MLTEEKIELQLGVNHMGHFLLTMLLLDKL 265 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~-----------------------------~~~~~~~~~~~~vN~~g~~~l~~~~~~~l 265 (429)
+.++|.++|.+..|||++..+. ..+.|++...|+.|++|||++.+.+.|.+
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 9999999999999999864320 13567888999999999999999999998
Q ss_pred HhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeE
Q psy12836 266 QANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGIT 345 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIr 345 (429)
. .+....+|.+||..+....++.+|+. .+.+..+|+.||.+...+.-++-+.+.+.|+.
T Consensus 163 ~------------------~~~~~~lvwtSS~~a~kk~lsleD~q---~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~ 221 (341)
T KOG1478|consen 163 C------------------HSDNPQLVWTSSRMARKKNLSLEDFQ---HSKGKEPYSSSKRLTDLLHVALNRNFKPLGIN 221 (341)
T ss_pred h------------------cCCCCeEEEEeecccccccCCHHHHh---hhcCCCCcchhHHHHHHHHHHHhccccccchh
Confidence 7 44556999999998887766655543 23567789999999999999999999999999
Q ss_pred EEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh----h-ccCCHHHHHHHHHHHhcC
Q psy12836 346 VNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW----L-FIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 346 Vn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~peevA~~iv~l~~~ 398 (429)
-++++||..-|.+......+--+.......-+.+ . -..+|-.+|.+.+|+...
T Consensus 222 qyvv~pg~~tt~~~~~~l~~~~~~~~~~~fyl~rllgspwh~id~y~aa~A~vw~~l~ 279 (341)
T KOG1478|consen 222 QYVVQPGIFTTNSFSEYLNPFTYFGMLCGFYLARLLGSPWHNIDPYKAANAPVWVTLA 279 (341)
T ss_pred hhcccCceeecchhhhhhhhHHHHHHHHHHHHHHHhcCcccccCccccccchhhhhhc
Confidence 9999999988887655432111111111111110 0 124677788888888643
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=234.92 Aligned_cols=181 Identities=21% Similarity=0.170 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcCh--------------hH---------------------------
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDL--------------DK--------------------------- 178 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~--------------~~--------------------------- 178 (429)
+||++|||||++|||+++|++|+++ |++|++++|+. ..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5899999999999999999999998 69999999982 00
Q ss_pred ------HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcch
Q psy12836 179 ------CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVN 250 (429)
Q Consensus 179 ------~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN 250 (429)
..+..+.+.. .+.++.++.||++|.++++++++++.+. ++||+||||||+.... .+.+.++|++.|++|
T Consensus 2076 ~~~~~ei~~~la~l~~--~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKA--AGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred cchhHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHHHHHH
Confidence 0111112211 2346888999999999999999999877 6899999999987543 567899999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHH
Q psy12836 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVL 330 (429)
Q Consensus 251 ~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~ 330 (429)
+.|.+++++.+.+.+ .++||++||.++.++. +++..|+++|++++.
T Consensus 2153 v~G~~~Ll~al~~~~----------------------~~~IV~~SSvag~~G~------------~gqs~YaaAkaaL~~ 2198 (2582)
T TIGR02813 2153 VDGLLSLLAALNAEN----------------------IKLLALFSSAAGFYGN------------TGQSDYAMSNDILNK 2198 (2582)
T ss_pred HHHHHHHHHHHHHhC----------------------CCeEEEEechhhcCCC------------CCcHHHHHHHHHHHH
Confidence 999999988876533 3589999999998876 678899999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCccCCccc
Q psy12836 331 FTRELAKRLEGTGITVNAVHPGIVNTDILR 360 (429)
Q Consensus 331 l~~~la~el~~~gIrVn~V~PG~v~T~~~~ 360 (429)
+++.++.++. +++|++|+||+++|+|..
T Consensus 2199 la~~la~~~~--~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2199 AALQLKALNP--SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred HHHHHHHHcC--CcEEEEEECCeecCCccc
Confidence 9999999875 499999999999999863
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=202.27 Aligned_cols=226 Identities=17% Similarity=0.138 Sum_probs=164.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh-----c--CCceEEEEEeeCCCHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-----S--KNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-----~--~~~~v~~~~~Dls~~~sv~ 209 (429)
....+||+++||||+||||++++++|+++|++|++++|+.++++...+++... + ...++.++.+|+++.++++
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 44567899999999999999999999999999999999998887766655321 1 1135788999999998876
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
++ ++++|+||||||.... ...++...+++|+.|+.++++++. ..+.+
T Consensus 155 ~a-------LggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt~nLl~Aa~----------------------~agVg 201 (576)
T PLN03209 155 PA-------LGNASVVICCIGASEK----EVFDVTGPYRIDYLATKNLVDAAT----------------------VAKVN 201 (576)
T ss_pred HH-------hcCCCEEEEccccccc----cccchhhHHHHHHHHHHHHHHHHH----------------------HhCCC
Confidence 53 3578999999997532 112466778999999988888775 22457
Q ss_pred EEEEEcCccccc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 290 RIINVSSVAHKR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 290 ~IV~vSS~~~~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+||++||.++.. +. + ...|. +|+++..+.+.+..++...||+++.|+||++.|++...... ..
T Consensus 202 RIV~VSSiga~~~g~------------p-~~~~~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t--~~ 265 (576)
T PLN03209 202 HFILVTSLGTNKVGF------------P-AAILN-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKET--HN 265 (576)
T ss_pred EEEEEccchhcccCc------------c-ccchh-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCccccccc--cc
Confidence 999999987531 11 1 11244 78888888888999998999999999999998886432110 00
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
. .......+.++..+++|+|+.+++++++++.. .+..|.+-.+
T Consensus 266 v-~~~~~d~~~gr~isreDVA~vVvfLasd~~as--~~kvvevi~~ 308 (576)
T PLN03209 266 L-TLSEEDTLFGGQVSNLQVAELMACMAKNRRLS--YCKVVEVIAE 308 (576)
T ss_pred e-eeccccccCCCccCHHHHHHHHHHHHcCchhc--cceEEEEEeC
Confidence 0 00111233456789999999999999877543 3666655443
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=170.78 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=141.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHH---HHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKA---RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~---~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|+++||||++|||++++++|+++|+ .|++++|+.+..+.. .++++.. +.++.++.+|+++.++++++++++...
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR 78 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999997 688888876544322 2333322 346788899999999999999999988
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|++|||||.... ....+.++++.++++|+.+++.+.+.+. +.+.+++|++||
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~ii~~ss 136 (180)
T smart00822 79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTR----------------------DLPLDFFVLFSS 136 (180)
T ss_pred cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhc----------------------cCCcceEEEEcc
Confidence 9999999999997643 2566788999999999999999998873 335589999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN 355 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~ 355 (429)
..+..+. ++...|+++|+++..+++.++. .|+++.++.||++.
T Consensus 137 ~~~~~~~------------~~~~~y~~sk~~~~~~~~~~~~----~~~~~~~~~~g~~~ 179 (180)
T smart00822 137 VAGVLGN------------PGQANYAAANAFLDALAAHRRA----RGLPATSINWGAWA 179 (180)
T ss_pred HHHhcCC------------CCchhhHHHHHHHHHHHHHHHh----cCCceEEEeecccc
Confidence 8887764 4577899999999998877654 68889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=183.67 Aligned_cols=205 Identities=17% Similarity=0.157 Sum_probs=152.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++||+++||||+|+||++++++|+++| ++|++++|+..+.....+.+ ...++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~~~---- 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRALR---- 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHh----
Confidence 468999999999999999999999987 78999999876544333322 12367889999999999888764
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+|||+||..... ....+.+..+++|+.|+.++++++.+ .+.++||++||.
T Consensus 74 ---~iD~Vih~Ag~~~~~--~~~~~~~~~~~~Nv~g~~~ll~aa~~----------------------~~~~~iV~~SS~ 126 (324)
T TIGR03589 74 ---GVDYVVHAAALKQVP--AAEYNPFECIRTNINGAQNVIDAAID----------------------NGVKRVVALSTD 126 (324)
T ss_pred ---cCCEEEECcccCCCc--hhhcCHHHHHHHHHHHHHHHHHHHHH----------------------cCCCEEEEEeCC
Confidence 479999999975422 12223456899999999999988863 244799999996
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK-- 375 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~-- 375 (429)
... .+...|++||++.+.+++.++.++...|++++++.||.+..+... . -+.+......
T Consensus 127 ~~~---------------~p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~-~---i~~~~~~~~~~~ 187 (324)
T TIGR03589 127 KAA---------------NPINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS-V---VPFFKSLKEEGV 187 (324)
T ss_pred CCC---------------CCCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC-c---HHHHHHHHHhCC
Confidence 432 235679999999999999999888889999999999999876321 1 1112211111
Q ss_pred -HHhh------hccCCHHHHHHHHHHHhcC
Q psy12836 376 -PLVW------LFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 376 -~~~~------~~~~~peevA~~iv~l~~~ 398 (429)
+++. ..+..++|+|++++.++..
T Consensus 188 ~~~~i~~~~~~r~~i~v~D~a~a~~~al~~ 217 (324)
T TIGR03589 188 TELPITDPRMTRFWITLEQGVNFVLKSLER 217 (324)
T ss_pred CCeeeCCCCceEeeEEHHHHHHHHHHHHhh
Confidence 1111 1256899999999999854
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=182.17 Aligned_cols=237 Identities=19% Similarity=0.151 Sum_probs=161.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+||++|||||+|+||++++++|+++|++|++++|+.+................++.++.+|+++.++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID------- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence 4799999999999999999999999999999999876654432222111112367888999999998888775
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+||||||.... ..+.+.+...+++|+.|++++++++.+.+ ..++||++||.++.
T Consensus 77 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---------------------~~~~iv~~SS~~~~ 133 (325)
T PLN02989 77 GCETVFHTASPVAI--TVKTDPQVELINPAVNGTINVLRTCTKVS---------------------SVKRVILTSSMAAV 133 (325)
T ss_pred CCCEEEEeCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHcC---------------------CceEEEEecchhhe
Confidence 47999999996532 22345678899999999999999886532 24799999998776
Q ss_pred cCCCC----cccCCCCCCCC------CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chhH
Q psy12836 301 RGTIN----KEDLNSENSYD------PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSWL 369 (429)
Q Consensus 301 ~~~~~----~~~l~~~~~~~------~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~ 369 (429)
.+... ...+++..... +...|+.||.+.+.+++.++++ .|+.++.+.|+.+..|........ ...+
T Consensus 134 ~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilR~~~vyGp~~~~~~~~~~~~i 210 (325)
T PLN02989 134 LAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKD---NEIDLIVLNPGLVTGPILQPTLNFSVAVI 210 (325)
T ss_pred ecCCccCCCCCccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHH---cCCeEEEEcCCceeCCCCCCCCCchHHHH
Confidence 54321 11122222211 2357999999999999888765 479999999999988764322111 1111
Q ss_pred HHHHHhHHhh----hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 370 STVVLKPLVW----LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 370 ~~~~~~~~~~----~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
...+....+. ..+..++|+|++++.++..+. ..|. |+++|+
T Consensus 211 ~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~~---~~~~-~ni~~~ 255 (325)
T PLN02989 211 VELMKGKNPFNTTHHRFVDVRDVALAHVKALETPS---ANGR-YIIDGP 255 (325)
T ss_pred HHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCcc---cCce-EEEecC
Confidence 1111111111 134568999999999986543 2354 455443
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=181.69 Aligned_cols=227 Identities=15% Similarity=0.040 Sum_probs=158.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++||++|||||+|+||.++++.|+++|++|++++|+..........+.. ..++.++.+|+++.+++.+++++.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~---- 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDAAKLRKAIAEF---- 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCHHHHHHHHhhc----
Confidence 4689999999999999999999999999999999987654333222211 124667899999999999988864
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+|||+||.... ..+.+++...+++|+.+++++++++.+ ....+++|++||.+.
T Consensus 75 -~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~ll~a~~~---------------------~~~~~~iv~~SS~~v 130 (349)
T TIGR02622 75 -KPEIVFHLAAQPLV--RKSYADPLETFETNVMGTVNLLEAIRA---------------------IGSVKAVVNVTSDKC 130 (349)
T ss_pred -CCCEEEECCccccc--ccchhCHHHHHHHhHHHHHHHHHHHHh---------------------cCCCCEEEEEechhh
Confidence 68999999996432 234566778899999999999987642 112469999999765
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC----CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG----TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~----~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
+..........+.....+...|+.||++.+.+++.++.++.+ +|++++++.|+.+..|........-+.+......
T Consensus 131 yg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~ 210 (349)
T TIGR02622 131 YRNDEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSS 210 (349)
T ss_pred hCCCCCCCCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhc
Confidence 422100111223333456778999999999999999988755 4899999999999876421111111122222211
Q ss_pred --HHh------hhccCCHHHHHHHHHHHhc
Q psy12836 376 --PLV------WLFIKSPRQGAQTIVYASL 397 (429)
Q Consensus 376 --~~~------~~~~~~peevA~~iv~l~~ 397 (429)
++. ..-+...+|+|++++.++.
T Consensus 211 g~~~~~~~g~~~rd~i~v~D~a~a~~~~~~ 240 (349)
T TIGR02622 211 NKIVIIRNPDATRPWQHVLEPLSGYLLLAE 240 (349)
T ss_pred CCCeEECCCCcccceeeHHHHHHHHHHHHH
Confidence 111 1224568899999998774
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=169.89 Aligned_cols=188 Identities=18% Similarity=0.101 Sum_probs=136.7
Q ss_pred CCCCEEEEEcCCCcHHHH--HHHHHHHcCCEEEEEEcChhHHH------------HHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 140 ARGKIVIVTGANTGIGKA--IARELAKRKAKVIMACRDLDKCE------------KARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 140 l~gK~vLITGassGIG~a--iA~~La~~G~~Vil~~R~~~~~~------------~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
-.||++|||||++|||++ +|++| ++|++|+++++..+..+ ...+.+... +..+..+.||+++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSD 115 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCH
Confidence 457999999999999999 89999 99999999885432211 222233221 23567889999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCCCC------------------------------------CCCHHHHHhhhcc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGCRK------------------------------------MLTEEKIELQLGV 249 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~------------------------------------~~~~~~~~~~~~v 249 (429)
++++++++++.+.+|+||+||||+|...... ..+.++++.++
T Consensus 116 E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv-- 193 (398)
T PRK13656 116 EIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTV-- 193 (398)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHH--
Confidence 9999999999999999999999999873211 12333444332
Q ss_pred hhHHH---HHHHHH--HHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc--chhH
Q psy12836 250 NHMGH---FLLTML--LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT--QAYN 322 (429)
Q Consensus 250 N~~g~---~~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~--~~Y~ 322 (429)
+++|. ...+++ ..+.| ..++++|-.|...+.... +.+ ..-+
T Consensus 194 ~vMggedw~~Wi~al~~a~ll--------------------a~g~~~va~TY~G~~~t~------------p~Y~~g~mG 241 (398)
T PRK13656 194 KVMGGEDWELWIDALDEAGVL--------------------AEGAKTVAYSYIGPELTH------------PIYWDGTIG 241 (398)
T ss_pred HhhccchHHHHHHHHHhcccc--------------------cCCcEEEEEecCCcceee------------cccCCchHH
Confidence 23333 112222 22222 246899999987665442 223 4679
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 323 QSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 323 aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
.+|++++.-++.|+.+|++.|||+|++.+|.+.|.-....+.
T Consensus 242 ~AKa~LE~~~r~La~~L~~~giran~i~~g~~~T~Ass~Ip~ 283 (398)
T PRK13656 242 KAKKDLDRTALALNEKLAAKGGDAYVSVLKAVVTQASSAIPV 283 (398)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhcCCC
Confidence 999999999999999999999999999999999987766653
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=176.38 Aligned_cols=229 Identities=14% Similarity=0.111 Sum_probs=151.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH-HHHHHHhh--hcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE-KARKEVVL--ESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~-~~~~~l~~--~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.+||++|||||+|+||++++++|+++|++|++++|+.+... ...+.+.. ...+.++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 577899999999999999999999999999999998754311 11122211 011235788999999999999988875
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC-CCcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES-APSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~IV~v 294 (429)
++|+||||||..... ...+..+..+++|+.|+.++++.+.+... ++ ...++|++
T Consensus 83 -----~~d~Vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~------------------~~~~~~~~v~~ 137 (340)
T PLN02653 83 -----KPDEVYNLAAQSHVA--VSFEMPDYTADVVATGALRLLEAVRLHGQ------------------ETGRQIKYYQA 137 (340)
T ss_pred -----CCCEEEECCcccchh--hhhhChhHHHHHHHHHHHHHHHHHHHhcc------------------ccccceeEEEe
Confidence 589999999975432 22344567789999999999999887653 11 11378888
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC---CCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG---TGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
||.+. ++.... +..+.....+...|+.||.+.+.+++.++.++.- .++.+|.+.||...+.+.... ..+..
T Consensus 138 Ss~~v-yg~~~~-~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~----~~~~~ 211 (340)
T PLN02653 138 GSSEM-YGSTPP-PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKI----TRAVG 211 (340)
T ss_pred ccHHH-hCCCCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHH----HHHHH
Confidence 88643 333221 3344444556788999999999999999887642 234445556653322110000 00000
Q ss_pred HHHh--HH--h------hhccCCHHHHHHHHHHHhcC
Q psy12836 372 VVLK--PL--V------WLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 372 ~~~~--~~--~------~~~~~~peevA~~iv~l~~~ 398 (429)
.+.. +. . ..-+...+|+|++++.++..
T Consensus 212 ~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~ 248 (340)
T PLN02653 212 RIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQ 248 (340)
T ss_pred HHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhc
Confidence 0111 01 0 11245899999999999854
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=169.00 Aligned_cols=237 Identities=20% Similarity=0.178 Sum_probs=156.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..||+++||||+|+||.+++++|+++|++|+++.|+.++.+.............++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------ 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence 45899999999999999999999999999999999876544332222111112367888999999998888776
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
.+|++||+||..... ..+.....+++|+.|+.++++.+.. ..+.++||++||.++
T Consensus 77 -~~d~vih~A~~~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~---------------------~~~v~rvV~~SS~~~ 131 (322)
T PLN02986 77 -GCDAVFHTASPVFFT---VKDPQTELIDPALKGTINVLNTCKE---------------------TPSVKRVILTSSTAA 131 (322)
T ss_pred -CCCEEEEeCCCcCCC---CCCchhhhhHHHHHHHHHHHHHHHh---------------------cCCccEEEEecchhh
Confidence 479999999975321 1123356789999999998887642 113469999999876
Q ss_pred cc-CCCC--cc-cCCCCCCC------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 300 KR-GTIN--KE-DLNSENSY------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 300 ~~-~~~~--~~-~l~~~~~~------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
.. +... .. .+++.... .+...|++||.+.+.+++.+.++ .|+.+++++|+.+.+|............
T Consensus 132 ~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~---~~~~~~~lrp~~v~Gp~~~~~~~~~~~~ 208 (322)
T PLN02986 132 VLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKD---NGIDMVVLNPGFICGPLLQPTLNFSVEL 208 (322)
T ss_pred eecCCccCCCCCCcCcccCCChHHhhccccchHHHHHHHHHHHHHHHHH---hCCeEEEEcccceeCCCCCCCCCccHHH
Confidence 42 2111 11 12221111 12467999999999988888765 4799999999999888643221101111
Q ss_pred HHHHHhHH-----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 370 STVVLKPL-----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 370 ~~~~~~~~-----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
...+.... ....+..++|+|++++.++..+.. .|. |++.+.
T Consensus 209 ~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~~---~~~-yni~~~ 254 (322)
T PLN02986 209 IVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPSA---NGR-YIIDGP 254 (322)
T ss_pred HHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCccc---CCc-EEEecC
Confidence 11111110 112356899999999999976532 354 455443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=153.45 Aligned_cols=149 Identities=20% Similarity=0.171 Sum_probs=118.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||+++||||++|||+++|+.|+++|++|++++|+.+.+++..+++.... ....++++|+++.++++++++++.+
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999887777767765332 3566789999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+|++|++|||||+.... .+.++++ ++ .+|+.+++..++.+.++|.++... ...++.||+..|
T Consensus 90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 155 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEE-----------VVLSDLPIFGII 155 (169)
T ss_pred HcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCE-----------EEeecCceeeEe
Confidence 999999999999986533 2223333 33 677888899999999998754221 114567999999
Q ss_pred cCcccccC
Q psy12836 295 SSVAHKRG 302 (429)
Q Consensus 295 SS~~~~~~ 302 (429)
||.+..+.
T Consensus 156 ~~~~~~~~ 163 (169)
T PRK06720 156 GTKGQSFH 163 (169)
T ss_pred ccccccce
Confidence 99776543
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=167.21 Aligned_cols=223 Identities=16% Similarity=0.094 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+.|++|||||+|+||++++++|+++|++|++++|+.+................++.++.+|+++.+.++++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------- 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------- 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh-------
Confidence 4679999999999999999999999999999999876655443322111111357888999999988887765
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
.+|+|||+|+..... ..+..+..+++|+.|+.++++++.+.. ..++||++||.+..
T Consensus 77 ~~d~ViH~A~~~~~~---~~~~~~~~~~~Nv~gt~~ll~aa~~~~---------------------~~~r~v~~SS~~~~ 132 (351)
T PLN02650 77 GCTGVFHVATPMDFE---SKDPENEVIKPTVNGMLSIMKACAKAK---------------------TVRRIVFTSSAGTV 132 (351)
T ss_pred CCCEEEEeCCCCCCC---CCCchhhhhhHHHHHHHHHHHHHHhcC---------------------CceEEEEecchhhc
Confidence 469999999865321 112335678999999999999886421 13699999997654
Q ss_pred cCCCCccc-CCCCC---------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 301 RGTINKED-LNSEN---------SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 301 ~~~~~~~~-l~~~~---------~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
.+.....+ ..+.. ...+...|+.||.+.+.+++.++.+ +|++++.+.|+.+..|...... .+.+.
T Consensus 133 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~Gp~~~~~~--~~~~~ 207 (351)
T PLN02650 133 NVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAE---NGLDFISIIPTLVVGPFISTSM--PPSLI 207 (351)
T ss_pred ccCCCCCCccCcccCCchhhhhccccccchHHHHHHHHHHHHHHHHHH---cCCeEEEECCCceECCCCCCCC--CccHH
Confidence 43211111 11111 0112357999999999999888775 5899999999999888643311 11111
Q ss_pred HHHH---h-H-----HhhhccCCHHHHHHHHHHHhcCC
Q psy12836 371 TVVL---K-P-----LVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 371 ~~~~---~-~-----~~~~~~~~peevA~~iv~l~~~~ 399 (429)
..+. . . .....+..++|+|++++.++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~ 245 (351)
T PLN02650 208 TALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHP 245 (351)
T ss_pred HHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCc
Confidence 1110 0 0 01124678999999999999654
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=164.49 Aligned_cols=231 Identities=15% Similarity=0.065 Sum_probs=153.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH--HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK--CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~--~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+-.+|+++||||+|+||++++++|+++|++|+++.|+.+. ..+....+.. .+.++.++.+|++|.+++.+++.
T Consensus 3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~~~~~l~--- 77 (297)
T PLN02583 3 DESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC--EEERLKVFDVDPLDYHSILDALK--- 77 (297)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc--CCCceEEEEecCCCHHHHHHHHc---
Confidence 3457899999999999999999999999999999996432 2222222211 12357788999999998876553
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
..|.++|.++.... .. ..++.++++|+.|++++++++.+.+ ..++||++||
T Consensus 78 ----~~d~v~~~~~~~~~---~~-~~~~~~~~~nv~gt~~ll~aa~~~~---------------------~v~riV~~SS 128 (297)
T PLN02583 78 ----GCSGLFCCFDPPSD---YP-SYDEKMVDVEVRAAHNVLEACAQTD---------------------TIEKVVFTSS 128 (297)
T ss_pred ----CCCEEEEeCccCCc---cc-ccHHHHHHHHHHHHHHHHHHHHhcC---------------------CccEEEEecc
Confidence 46888887654321 11 2467889999999999999987532 2479999999
Q ss_pred cccccCC-C---CcccCCCCCCCC-------CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC
Q psy12836 297 VAHKRGT-I---NKEDLNSENSYD-------PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365 (429)
Q Consensus 297 ~~~~~~~-~---~~~~l~~~~~~~-------~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~ 365 (429)
.++.... . .....++. .+. ....|+.||...+.++..++++ .|+++++|+|+.|..|......
T Consensus 129 ~~a~~~~~~~~~~~~~~~E~-~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~---~gi~~v~lrp~~v~Gp~~~~~~-- 202 (297)
T PLN02583 129 LTAVIWRDDNISTQKDVDER-SWSDQNFCRKFKLWHALAKTLSEKTAWALAMD---RGVNMVSINAGLLMGPSLTQHN-- 202 (297)
T ss_pred hHheecccccCCCCCCCCcc-cCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH---hCCcEEEEcCCcccCCCCCCch--
Confidence 8775321 1 11112221 111 1126999999999988887764 4899999999999887643211
Q ss_pred chhHHHHH-HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 366 DSWLSTVV-LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 366 ~~~~~~~~-~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
+.+.... ...-....+.+++|+|++++.++..+. ..|.++...+
T Consensus 203 -~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~~~---~~~r~~~~~~ 247 (297)
T PLN02583 203 -PYLKGAAQMYENGVLVTVDVNFLVDAHIRAFEDVS---SYGRYLCFNH 247 (297)
T ss_pred -hhhcCCcccCcccCcceEEHHHHHHHHHHHhcCcc---cCCcEEEecC
Confidence 0000000 000001135789999999999997553 3466554433
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=159.41 Aligned_cols=237 Identities=23% Similarity=0.207 Sum_probs=168.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH--HHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA--RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~--~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+||||+|.||..+++.|+++|+.|..+.|++++.+.. ..++. ....+...+..|+++++++..+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~--~a~~~l~l~~aDL~d~~sf~~ai~g---- 78 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLE--GAKERLKLFKADLLDEGSFDKAIDG---- 78 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcc--cCcccceEEeccccccchHHHHHhC----
Confidence 689999999999999999999999999999999999874442 33332 2234688899999999999999985
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
.|+|+|.|........ +.-.+.++..+.|+.++++++.. ...-.|||++||.+
T Consensus 79 ---cdgVfH~Asp~~~~~~---~~e~~li~pav~Gt~nVL~ac~~---------------------~~sVkrvV~TSS~a 131 (327)
T KOG1502|consen 79 ---CDGVFHTASPVDFDLE---DPEKELIDPAVKGTKNVLEACKK---------------------TKSVKRVVYTSSTA 131 (327)
T ss_pred ---CCEEEEeCccCCCCCC---CcHHhhhhHHHHHHHHHHHHHhc---------------------cCCcceEEEeccHH
Confidence 5999999987643211 11236788999999999988863 12357999999999
Q ss_pred cccCC-CC--cccCCCCCCCC-------CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 299 HKRGT-IN--KEDLNSENSYD-------PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 299 ~~~~~-~~--~~~l~~~~~~~-------~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+.... .. ....-.+..|. ....|+.||...+.-+..++.| .|+...+|+||+|-.|........-..
T Consensus 132 Av~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e---~~~~lv~inP~lV~GP~l~~~l~~s~~ 208 (327)
T KOG1502|consen 132 AVRYNGPNIGENSVVDEESWSDLDFCRCKKLWYALSKTLAEKAAWEFAKE---NGLDLVTINPGLVFGPGLQPSLNSSLN 208 (327)
T ss_pred HhccCCcCCCCCcccccccCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHh---CCccEEEecCCceECCCcccccchhHH
Confidence 98754 21 11111222221 1246899998777776666665 479999999999998877653211111
Q ss_pred HHHHHHh------HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLK------PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~------~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..-.+.. +..+..+.+.+|+|.+.++++..|.+ .|+|+.......
T Consensus 209 ~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a---~GRyic~~~~~~ 259 (327)
T KOG1502|consen 209 ALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSA---KGRYICVGEVVS 259 (327)
T ss_pred HHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCccc---CceEEEecCccc
Confidence 1111111 11122357899999999999988754 599998876655
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=152.59 Aligned_cols=171 Identities=23% Similarity=0.279 Sum_probs=131.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++|||||.+|||..+++.|+++|. +|++++|+. ....+..++++.. +.++.+++||++|+++++++++++.+.+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 789999999999999999999985 899999993 2334556666554 4589999999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++||.+||+||..... .+.+.++++..+...+.|..++.+.+. ..+...+|.+||+
T Consensus 80 ~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~----------------------~~~l~~~i~~SSi 137 (181)
T PF08659_consen 80 GPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALE----------------------NRPLDFFILFSSI 137 (181)
T ss_dssp S-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHT----------------------TTTTSEEEEEEEH
T ss_pred CCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhh----------------------cCCCCeEEEECCh
Confidence 9999999999987543 667899999999999999999888765 3355799999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v 354 (429)
++..|. ++...|+++-+.++.|++..+. .|..+.+|+-|..
T Consensus 138 s~~~G~------------~gq~~YaaAN~~lda~a~~~~~----~g~~~~sI~wg~W 178 (181)
T PF08659_consen 138 SSLLGG------------PGQSAYAAANAFLDALARQRRS----RGLPAVSINWGAW 178 (181)
T ss_dssp HHHTT-------------TTBHHHHHHHHHHHHHHHHHHH----TTSEEEEEEE-EB
T ss_pred hHhccC------------cchHhHHHHHHHHHHHHHHHHh----CCCCEEEEEcccc
Confidence 999887 6789999999998888876554 4677888887754
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=164.76 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=132.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|++|+++||||+|+||.+++++|+++|++|++++|...........+.... ...++.++.+|+++.+++.+++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~- 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST- 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-
Confidence 5778999999999999999999999999999999875432222222221111 1235778899999999998887753
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+|||+||..... .+.++++..+++|+.++.++++++. +.+.+++|++||
T Consensus 81 ----~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~Ss 132 (352)
T PLN02240 81 ----RFDAVIHFAGLKAVG--ESVAKPLLYYDNNLVGTINLLEVMA----------------------KHGCKKLVFSSS 132 (352)
T ss_pred ----CCCEEEEccccCCcc--ccccCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEcc
Confidence 789999999975422 2334567789999999999887553 334469999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v 354 (429)
... ++......+.+.....+..+|+.||.+.+.+++.++.+ ..++.+..+.|+.+
T Consensus 133 ~~v-yg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~~R~~~v 187 (352)
T PLN02240 133 ATV-YGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHAS--DPEWKIILLRYFNP 187 (352)
T ss_pred HHH-hCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCCCEEEEeecCc
Confidence 643 33322233445455566789999999999999988765 23577777776544
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=161.42 Aligned_cols=233 Identities=19% Similarity=0.138 Sum_probs=152.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+||+++||||+|+||++++++|+++|++|++++|+.+................++.++.+|+++.+++..+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD------- 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc-------
Confidence 4789999999999999999999999999999999875433222111111112367889999999988877765
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+|+...... .+..+..+++|+.|+.++++++... .+.++||++||.++.
T Consensus 76 ~~d~Vih~A~~~~~~~---~~~~~~~~~~nv~gt~~ll~a~~~~---------------------~~~~~~v~~SS~~~~ 131 (322)
T PLN02662 76 GCEGVFHTASPFYHDV---TDPQAELIDPAVKGTLNVLRSCAKV---------------------PSVKRVVVTSSMAAV 131 (322)
T ss_pred CCCEEEEeCCcccCCC---CChHHHHHHHHHHHHHHHHHHHHhC---------------------CCCCEEEEccCHHHh
Confidence 4699999999753211 1222467899999999999887531 134699999997642
Q ss_pred -cCC-CC--cccCCCCCCCCC------cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 301 -RGT-IN--KEDLNSENSYDP------TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 301 -~~~-~~--~~~l~~~~~~~~------~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
++. .. ...+++.....+ ...|+.||.+.+.+++.++++ .|+++..+.|+.+.+|.............
T Consensus 132 ~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~ 208 (322)
T PLN02662 132 AYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKE---NGIDMVTINPAMVIGPLLQPTLNTSAEAI 208 (322)
T ss_pred cCCCcCCCCCCcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCcccCCCCCCCCCchHHHH
Confidence 221 10 011222211111 247999999999888877654 47999999999998886432210001111
Q ss_pred HHHHhH-----HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEe
Q psy12836 371 TVVLKP-----LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410 (429)
Q Consensus 371 ~~~~~~-----~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~ 410 (429)
..+... .....+..++|+|++++.++..+.. .|.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~---~~~~~~ 250 (322)
T PLN02662 209 LNLINGAQTFPNASYRWVDVRDVANAHIQAFEIPSA---SGRYCL 250 (322)
T ss_pred HHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCcCc---CCcEEE
Confidence 111110 0112357899999999999865532 465543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=161.82 Aligned_cols=226 Identities=19% Similarity=0.166 Sum_probs=154.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH-HHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA-RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~-~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++|+++||||+|+||++++++|+++|++|++++|+.++.... ...+. ....++.++.+|+++.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~----- 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELE--GGKERLILCKADLQDYEALKAAID----- 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhh--CCCCcEEEEecCcCChHHHHHHHh-----
Confidence 5688999999999999999999999999999999987653321 12221 112357788999999998887775
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+|||+||... ++.+..+++|+.|+.++++++.+ .+.++||++||.+
T Consensus 81 --~~d~Vih~A~~~~-------~~~~~~~~~nv~gt~~ll~aa~~----------------------~~v~r~V~~SS~~ 129 (342)
T PLN02214 81 --GCDGVFHTASPVT-------DDPEQMVEPAVNGAKFVINAAAE----------------------AKVKRVVITSSIG 129 (342)
T ss_pred --cCCEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHHHHh----------------------cCCCEEEEeccce
Confidence 4799999999642 23567899999999999988752 2346999999987
Q ss_pred cccCCCCc---ccCCCCC------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-CCchh
Q psy12836 299 HKRGTINK---EDLNSEN------SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-YYDSW 368 (429)
Q Consensus 299 ~~~~~~~~---~~l~~~~------~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-~~~~~ 368 (429)
+.++.... ..+++.. ...+...|+.||.+.+.+++.++.+ .|+++..+.|+.|-.|...... .....
T Consensus 130 avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~---~g~~~v~lRp~~vyGp~~~~~~~~~~~~ 206 (342)
T PLN02214 130 AVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKE---KGVDLVVLNPVLVLGPPLQPTINASLYH 206 (342)
T ss_pred eeeccCCCCCCcccCcccCCChhhccccccHHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCceECCCCCCCCCchHHH
Confidence 66543211 1122221 1124568999999999999888765 4799999999999877533211 00001
Q ss_pred HHHHHHhHHh-----hhccCCHHHHHHHHHHHhcCCCcccCCceEE
Q psy12836 369 LSTVVLKPLV-----WLFIKSPRQGAQTIVYASLDPSLENVSGKYF 409 (429)
Q Consensus 369 ~~~~~~~~~~-----~~~~~~peevA~~iv~l~~~~~~~~vtG~~i 409 (429)
+...+....+ ..-+..++|+|++++.++..+. ..|.|+
T Consensus 207 ~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~---~~g~yn 249 (342)
T PLN02214 207 VLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPS---ASGRYL 249 (342)
T ss_pred HHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCcc---cCCcEE
Confidence 1111111100 1124579999999999986542 246554
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-17 Score=159.72 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=150.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+++||||+|+||++++++|+++|++|++++|+.+....... +.......++.++.+|++|.+++.++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 79 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIA----- 79 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHh-----
Confidence 4568999999999999999999999999999999888654332221 1111111257788999999988877664
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+|||+|+.... ...+.....+++|+.|+.++++++.+. .+.++||++||.+
T Consensus 80 --~~d~vih~A~~~~~---~~~~~~~~~~~~nv~g~~~ll~a~~~~---------------------~~~~~~v~~SS~~ 133 (338)
T PLN00198 80 --GCDLVFHVATPVNF---ASEDPENDMIKPAIQGVHNVLKACAKA---------------------KSVKRVILTSSAA 133 (338)
T ss_pred --cCCEEEEeCCCCcc---CCCChHHHHHHHHHHHHHHHHHHHHhc---------------------CCccEEEEeecce
Confidence 47999999985321 112334556899999999999887531 1346999999987
Q ss_pred cccCCCC---cccCCCC---------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-CCC
Q psy12836 299 HKRGTIN---KEDLNSE---------NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-SYY 365 (429)
Q Consensus 299 ~~~~~~~---~~~l~~~---------~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~~~ 365 (429)
.+..... ...+.+. ...++...|+.||.+.+.+++.++.+ .|+.+..+.|+.+-.|..... ...
T Consensus 134 ~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~~R~~~vyGp~~~~~~~~~ 210 (338)
T PLN00198 134 AVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEE---NNIDLITVIPTLMAGPSLTSDIPSS 210 (338)
T ss_pred eeeccCCCCCCceeccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHh---cCceEEEEeCCceECCCccCCCCCc
Confidence 6542210 0011111 11245678999999999999888765 579999999999988753211 100
Q ss_pred chhHHHHHHh-HH--------h----hhccCCHHHHHHHHHHHhcCC
Q psy12836 366 DSWLSTVVLK-PL--------V----WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 366 ~~~~~~~~~~-~~--------~----~~~~~~peevA~~iv~l~~~~ 399 (429)
-......... .+ + ..-+..++|+|++++.++..+
T Consensus 211 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~ 257 (338)
T PLN00198 211 LSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKE 257 (338)
T ss_pred HHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCc
Confidence 0000010000 00 0 013578999999999998654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=162.84 Aligned_cols=243 Identities=13% Similarity=0.120 Sum_probs=158.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEE-EEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil-~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|++|||||+|+||++++++|+++|+++++ ++|.... ... ..+.......++.++.+|++|.+++++++++. +
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNL-MSLAPVAQSERFAFEKVDICDRAELARVFTEH-----Q 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cch-hhhhhcccCCceEEEECCCcChHHHHHHHhhc-----C
Confidence 68999999999999999999999987554 4543221 111 11111111235778899999999998888752 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||.... ..+.++++..+++|+.|+.++++++.+.+..... ...+..++|++||.+.+
T Consensus 75 ~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~-------------~~~~~~~~i~~SS~~vy- 138 (355)
T PRK10217 75 PDCVMHLAAESHV--DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTE-------------DKKSAFRFHHISTDEVY- 138 (355)
T ss_pred CCEEEECCcccCc--chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccc-------------cccCceEEEEecchhhc-
Confidence 8999999997542 2234567889999999999999999875421000 01223589999986543
Q ss_pred CCCC--cccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--HH
Q psy12836 302 GTIN--KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK--PL 377 (429)
Q Consensus 302 ~~~~--~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~--~~ 377 (429)
+... ..++.+.....+...|+.||.+.+.+++.+++++ |+++..+.|+.+-.|...... .-+.+...... ++
T Consensus 139 g~~~~~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~~~~~~-~~~~~~~~~~~~~~~ 214 (355)
T PRK10217 139 GDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY---GLPTLITNCSNNYGPYHFPEK-LIPLMILNALAGKPL 214 (355)
T ss_pred CCCCCCCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCCCCccc-HHHHHHHHHhcCCCc
Confidence 3211 1123344444567889999999999999998764 688888888877665421111 00111111111 11
Q ss_pred h-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 378 V-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 378 ~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+ ..-+..++|+|++++.++..+ ..|..|++.++..
T Consensus 215 ~~~g~g~~~~~~i~v~D~a~a~~~~~~~~----~~~~~yni~~~~~ 256 (355)
T PRK10217 215 PVYGNGQQIRDWLYVEDHARALYCVATTG----KVGETYNIGGHNE 256 (355)
T ss_pred eEeCCCCeeeCcCcHHHHHHHHHHHHhcC----CCCCeEEeCCCCc
Confidence 1 123578999999999888542 2466677665543
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=165.32 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=121.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH-HHHHHHhh---hcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE-KARKEVVL---ESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~-~~~~~l~~---~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|++|||||+|+||++++++|+++|++|++++|+.+... .....+.. ...+..+.++.+|++|.+++.++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~--- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI--- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence 68999999999999999999999999999999764211 11111111 001235788999999999999988865
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+|||+|+...... ..+.....+++|+.|+.++++++.+.-. ....++|++||.+
T Consensus 78 --~~d~ViH~Aa~~~~~~--~~~~~~~~~~~n~~gt~~ll~a~~~~~~-------------------~~~~~~v~~SS~~ 134 (343)
T TIGR01472 78 --KPTEIYNLAAQSHVKV--SFEIPEYTADVDGIGTLRLLEAVRTLGL-------------------IKSVKFYQASTSE 134 (343)
T ss_pred --CCCEEEECCcccccch--hhhChHHHHHHHHHHHHHHHHHHHHhCC-------------------CcCeeEEEeccHH
Confidence 5899999999764321 2223356678899999999988864210 1124899999975
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL 339 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el 339 (429)
.+ +.....+..+.....+...|++||.+.+.+++.++.++
T Consensus 135 vy-g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 174 (343)
T TIGR01472 135 LY-GKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAY 174 (343)
T ss_pred hh-CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 43 33222234444455677899999999999999998875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=157.08 Aligned_cols=226 Identities=17% Similarity=0.108 Sum_probs=153.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+..-+++++|||||+|+||++++++|+++|++|++++|+.++.......+.. ..++.++.+|+++.+++.++++
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~--- 78 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVK--- 78 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHc---
Confidence 4566788999999999999999999999999999999987665554443321 2368889999999998877764
Q ss_pred HhCCCeeEEEEccccCCCCC---CCCHHHH--HhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 217 KENKKINVLINNAGVSGCRK---MLTEEKI--ELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~---~~~~~~~--~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
.+|+|||+||...... ..+.+.+ ...+++|+.|+.++++++.+. ...++|
T Consensus 79 ----~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~---------------------~~~~~~ 133 (353)
T PLN02896 79 ----GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS---------------------KTVKRV 133 (353)
T ss_pred ----CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc---------------------CCccEE
Confidence 4799999999764332 1122222 345677778988888877532 124699
Q ss_pred EEEcCcccccCCCCc----ccCCCC--C-------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 292 INVSSVAHKRGTINK----EDLNSE--N-------SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 292 V~vSS~~~~~~~~~~----~~l~~~--~-------~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
|++||.+.+...... ..+++. . ..++...|+.||.+.+.+++.++++ .|+++.++.|+.+-.|.
T Consensus 134 v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 134 VFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKE---NGIDLVSVITTTVAGPF 210 (353)
T ss_pred EEEechhhccccccCCCCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHH---cCCeEEEEcCCcccCCC
Confidence 999997665422110 112221 0 1123347999999999999888765 47999999999888875
Q ss_pred ccCCCCCchhHHHHHHhHH----h-------------hhccCCHHHHHHHHHHHhcCC
Q psy12836 359 LRHSSYYDSWLSTVVLKPL----V-------------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~----~-------------~~~~~~peevA~~iv~l~~~~ 399 (429)
..... .... ..+..++ . ..-+..++|+|++++.++..+
T Consensus 211 ~~~~~--~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~ 265 (353)
T PLN02896 211 LTPSV--PSSI-QVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQT 265 (353)
T ss_pred cCCCC--CchH-HHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCC
Confidence 43211 1111 1111100 0 012468999999999998644
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=153.89 Aligned_cols=235 Identities=15% Similarity=0.085 Sum_probs=154.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHH-HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKC-EKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+++||||+|+||.+++++|+++| ++|++++|..... .+..+.+. ....+.++.+|+++++++.++++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~----- 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE---DNPRYRFVKGDIGDRELVSRLFTEH----- 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc---cCCCcEEEEcCCcCHHHHHHHHhhc-----
Confidence 38999999999999999999987 7898887642111 11111221 1235778899999999998888753
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+||..... .+.+..+..+++|+.++.++++.+...+ ...++|++||....
T Consensus 73 ~~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------------------~~~~~i~~Ss~~v~ 129 (317)
T TIGR01181 73 QPDAVVHFAAESHVD--RSISGPAAFIETNVVGTYTLLEAVRKYW---------------------HEFRFHHISTDEVY 129 (317)
T ss_pred CCCEEEEcccccCch--hhhhCHHHHHHHHHHHHHHHHHHHHhcC---------------------CCceEEEeecccee
Confidence 589999999975422 2334567789999999999887765322 23489999996543
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--HHh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK--PLV 378 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~--~~~ 378 (429)
..........+.....+...|+.+|.+.+.+++.++.+ .|+++..+.|+.+-.+....... .+.+...... +++
T Consensus 130 g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~i~R~~~i~G~~~~~~~~-~~~~~~~~~~~~~~~ 205 (317)
T TIGR01181 130 GDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRT---YGLPALITRCSNNYGPYQFPEKL-IPLMITNALAGKPLP 205 (317)
T ss_pred CCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCCeEEEEeccccCCCCCcccH-HHHHHHHHhcCCCce
Confidence 32211112333333455678999999999999998776 46999999999887664321110 1111111111 111
Q ss_pred -------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 -------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 -------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..-+..++|+|+++..++..+ ..|+.|+++++...
T Consensus 206 ~~~~g~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~~ 247 (317)
T TIGR01181 206 VYGDGQQVRDWLYVEDHCRAIYLVLEKG----RVGETYNIGGGNER 247 (317)
T ss_pred EeCCCceEEeeEEHHHHHHHHHHHHcCC----CCCceEEeCCCCce
Confidence 012346899999999998543 24677777666443
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=163.18 Aligned_cols=226 Identities=17% Similarity=0.167 Sum_probs=181.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++||+++||||+|.||.++++++++.+. ++++.+|++-++-....+++...+..++.++-+|+.|.+.++.++++.
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~-- 324 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH-- 324 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC--
Confidence 46899999999999999999999999986 689999999999999999988777778999999999999999999865
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+++|.|+.-+-+ +-+....+.+.+|++|+.++++++. +.+-.++|.+|+-
T Consensus 325 ---kvd~VfHAAA~KHVP--l~E~nP~Eai~tNV~GT~nv~~aa~----------------------~~~V~~~V~iSTD 377 (588)
T COG1086 325 ---KVDIVFHAAALKHVP--LVEYNPEEAIKTNVLGTENVAEAAI----------------------KNGVKKFVLISTD 377 (588)
T ss_pred ---CCceEEEhhhhccCc--chhcCHHHHHHHhhHhHHHHHHHHH----------------------HhCCCEEEEEecC
Confidence 799999999986533 3345567788999999999999987 4466899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK-- 375 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~-- 375 (429)
-+..| ...||+||...+.+..+++.+....+-++.+|.=|.|-.....-.+ .+.+.+.+
T Consensus 378 KAV~P---------------tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViP----lFk~QI~~Gg 438 (588)
T COG1086 378 KAVNP---------------TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIP----LFKKQIAEGG 438 (588)
T ss_pred cccCC---------------chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHH----HHHHHHHcCC
Confidence 77654 5789999999999999999877766789999999988654332222 12221211
Q ss_pred ------HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 ------PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ------~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+-...++++..|+++.++....- .-+|+.|..|-|-.
T Consensus 439 plTvTdp~mtRyfMTI~EAv~LVlqA~a~----~~gGeifvldMGep 481 (588)
T COG1086 439 PLTVTDPDMTRFFMTIPEAVQLVLQAGAI----AKGGEIFVLDMGEP 481 (588)
T ss_pred CccccCCCceeEEEEHHHHHHHHHHHHhh----cCCCcEEEEcCCCC
Confidence 22345678999999999998743 34788888776543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=156.27 Aligned_cols=244 Identities=12% Similarity=0.021 Sum_probs=160.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh---cCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE---SKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~---~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
...+++|+++||||+|.||.+++++|+++|++|++++|...........+... ....++.++.+|+.|.+++..+++
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 34677899999999999999999999999999999998654322222222111 111257788999999888776664
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+|+|||.|+...... ..++....+++|+.|+.++++.+. +.+..++|+
T Consensus 90 -------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~nll~~~~----------------------~~~~~~~v~ 138 (348)
T PRK15181 90 -------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFLNMLTAAR----------------------DAHVSSFTY 138 (348)
T ss_pred -------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCeEEE
Confidence 4799999999754321 223345678999999999988764 224469999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~ 370 (429)
+||.+.+. .....+..++....+...|+.||.+.+.+++.++.+ .|+++..+.|+.+-.|...... ..-+.+.
T Consensus 139 ~SS~~vyg-~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~ 214 (348)
T PRK15181 139 AASSSTYG-DHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARS---YEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWI 214 (348)
T ss_pred eechHhhC-CCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHH---hCCCEEEEEecceeCcCCCCCCccccCHHHHH
Confidence 99975443 222222333333456678999999999988887654 4799999999988776432111 0011121
Q ss_pred HHHHh--HHhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 371 TVVLK--PLVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 371 ~~~~~--~~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..... ++.. .-+...+|+|++++.++..+. ....|..|++.++..
T Consensus 215 ~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~-~~~~~~~yni~~g~~ 268 (348)
T PRK15181 215 LSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTND-LASKNKVYNVAVGDR 268 (348)
T ss_pred HHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccc-ccCCCCEEEecCCCc
Confidence 11211 1111 123568999999988774331 112467777765543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-16 Score=146.30 Aligned_cols=219 Identities=21% Similarity=0.216 Sum_probs=138.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~ 216 (429)
...++|+++||||+|+||++++++|+++|++|+++.|+.++...... . +..+.++++|+++. +++ .+.+.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~----~--~~~~~~~~~Dl~d~~~~l---~~~~~ 83 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP----Q--DPSLQIVRADVTEGSDKL---VEAIG 83 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc----c--CCceEEEEeeCCCCHHHH---HHHhh
Confidence 45678999999999999999999999999999999999876543211 1 22578889999983 332 22220
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.++|+||+|+|...... ....+++|..++.++++++. +.+.++||++||
T Consensus 84 ---~~~d~vi~~~g~~~~~~------~~~~~~~n~~~~~~ll~a~~----------------------~~~~~~iV~iSS 132 (251)
T PLN00141 84 ---DDSDAVICATGFRRSFD------PFAPWKVDNFGTVNLVEACR----------------------KAGVTRFILVSS 132 (251)
T ss_pred ---cCCCEEEECCCCCcCCC------CCCceeeehHHHHHHHHHHH----------------------HcCCCEEEEEcc
Confidence 26899999998643211 11235788888888877763 335579999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHH-HHHHHHH-hcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLF-TRELAKR-LEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l-~~~la~e-l~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
.+....... .+....|...|.....+ .+..+.+ +...|++++.|+||++.++....... .. .
T Consensus 133 ~~v~g~~~~---------~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~----~~---~ 196 (251)
T PLN00141 133 ILVNGAAMG---------QILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIV----ME---P 196 (251)
T ss_pred ccccCCCcc---------cccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEE----EC---C
Confidence 864321100 01233466655543332 2322222 45679999999999987764321100 00 0
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.........+++|+|+.++.++.++... +..+.+.++.
T Consensus 197 ~~~~~~~~i~~~dvA~~~~~~~~~~~~~---~~~~~~~~~~ 234 (251)
T PLN00141 197 EDTLYEGSISRDQVAEVAVEALLCPESS---YKVVEIVARA 234 (251)
T ss_pred CCccccCcccHHHHHHHHHHHhcChhhc---CcEEEEecCC
Confidence 0001123569999999999999876532 3444444433
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=153.17 Aligned_cols=223 Identities=19% Similarity=0.090 Sum_probs=150.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
++++||||+|+||+++++.|+++|++|++++|+.+..... . ...+.++.+|+++.++++++++ .+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~----~~~~~~~~~D~~~~~~l~~~~~-------~~ 65 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL----E----GLDVEIVEGDLRDPASLRKAVA-------GC 65 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc----c----cCCceEEEeeCCCHHHHHHHHh-------CC
Confidence 3699999999999999999999999999999987653211 1 1247788999999998877765 46
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|++||+|+.... ..++.+..+++|+.++.++++++. +.+.+++|++||.+....
T Consensus 66 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~SS~~~~~~ 119 (328)
T TIGR03466 66 RALFHVAADYRL----WAPDPEEMYAANVEGTRNLLRAAL----------------------EAGVERVVYTSSVATLGV 119 (328)
T ss_pred CEEEEeceeccc----CCCCHHHHHHHHHHHHHHHHHHHH----------------------HhCCCeEEEEechhhcCc
Confidence 999999986421 123456778999999998888765 223569999999776543
Q ss_pred CCCcccCCCCCCCC---CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 303 TINKEDLNSENSYD---PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 303 ~~~~~~l~~~~~~~---~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
.....+..+..... ....|+.+|.+.+.+++.++.+ .|+++..+.|+.+-.+...........+........+.
T Consensus 120 ~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 196 (328)
T TIGR03466 120 RGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAE---KGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPA 196 (328)
T ss_pred CCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHHHHh---cCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCce
Confidence 21112223322222 2357999999999999888765 47999999999886554221111001111111111110
Q ss_pred -----hccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 380 -----LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 380 -----~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.-+...+|+|++++.++..+ ..|..+.+.+
T Consensus 197 ~~~~~~~~i~v~D~a~a~~~~~~~~----~~~~~~~~~~ 231 (328)
T TIGR03466 197 YVDTGLNLVHVDDVAEGHLLALERG----RIGERYILGG 231 (328)
T ss_pred eeCCCcceEEHHHHHHHHHHHHhCC----CCCceEEecC
Confidence 12357999999999888543 2577666643
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=151.74 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=148.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES----KNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
..+.++|++|||||+|+||++++++|+++|++|+++.|+.+..+.. .++.... .+..+.++.+|++|.+++.+++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 4467899999999999999999999999999999989987665443 2221111 0124778899999999998887
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+. +|.+||.|+...+.... .......++|+.++.++++++.. ..+..++|
T Consensus 127 ~~-------~d~V~hlA~~~~~~~~~--~~~~~~~~~nv~gt~~llea~~~---------------------~~~v~r~V 176 (367)
T PLN02686 127 DG-------CAGVFHTSAFVDPAGLS--GYTKSMAELEAKASENVIEACVR---------------------TESVRKCV 176 (367)
T ss_pred Hh-------ccEEEecCeeecccccc--cccchhhhhhHHHHHHHHHHHHh---------------------cCCccEEE
Confidence 64 48999999875432211 01123456788888888877642 11346999
Q ss_pred EEcCccc-ccCC--CCc--ccCCCC------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 293 NVSSVAH-KRGT--INK--EDLNSE------NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 293 ~vSS~~~-~~~~--~~~--~~l~~~------~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
++||.++ .++. ... ..+.+. ....+...|+.||.+.+.+++.++.+ .|+++++++|+.|..|....
T Consensus 177 ~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gl~~v~lRp~~vyGp~~~~ 253 (367)
T PLN02686 177 FTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG---KGLKLATICPALVTGPGFFR 253 (367)
T ss_pred EeccHHHhcccccCCCCCCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh---cCceEEEEcCCceECCCCCC
Confidence 9999742 2221 000 011111 11224457999999999999888765 58999999999998885322
Q ss_pred CCCCchhHHHHHHhHHh-----hhccCCHHHHHHHHHHHhcC
Q psy12836 362 SSYYDSWLSTVVLKPLV-----WLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 362 ~~~~~~~~~~~~~~~~~-----~~~~~~peevA~~iv~l~~~ 398 (429)
... ......+....+ ...+..++|+|++++.++..
T Consensus 254 ~~~--~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A~~~al~~ 293 (367)
T PLN02686 254 RNS--TATIAYLKGAQEMLADGLLATADVERLAEAHVCVYEA 293 (367)
T ss_pred CCC--hhHHHHhcCCCccCCCCCcCeEEHHHHHHHHHHHHhc
Confidence 110 011111111110 01256799999999998853
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=148.61 Aligned_cols=239 Identities=15% Similarity=0.059 Sum_probs=150.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|...........+... .+.++.++.+|++|.+++.++++. .++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 75 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILHD-----HAID 75 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence 5899999999999999999999999999876533222222222221 123466788999999998888764 3689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+||...... ..+.....+++|+.++.++++++. +.+.+++|++||.+.+ +.
T Consensus 76 ~vvh~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~Ss~~~y-g~ 130 (338)
T PRK10675 76 TVIHFAGLKAVGE--SVQKPLEYYDNNVNGTLRLISAMR----------------------AANVKNLIFSSSATVY-GD 130 (338)
T ss_pred EEEECCccccccc--hhhCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEeccHHhh-CC
Confidence 9999999764321 223345678999999888876543 3345689999996543 32
Q ss_pred CCcccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc----ccCCCC-----CchhHHHHH
Q psy12836 304 INKEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI----LRHSSY-----YDSWLSTVV 373 (429)
Q Consensus 304 ~~~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~----~~~~~~-----~~~~~~~~~ 373 (429)
.....+.+.... .+...|+.+|.+.+.+++.++++. .++++..+.|+.+..+. ...... .-+.+....
T Consensus 131 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 208 (338)
T PRK10675 131 QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVA 208 (338)
T ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhc--CCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHH
Confidence 222223333222 356789999999999999987653 25777777765554331 110000 001111111
Q ss_pred HhH---H-------------hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKP---L-------------VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~---~-------------~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
... + .+.-+...+|+|++++.++.... ....|+.|++.++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~-~~~~~~~~ni~~~~~ 266 (338)
T PRK10675 209 VGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLA-NKPGVHIYNLGAGVG 266 (338)
T ss_pred hcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhh-ccCCCceEEecCCCc
Confidence 100 0 01124678999999998885421 122356777766643
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=152.20 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=152.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAK-VIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+++||||+|+||++++++|+++|++ |+.+++.. ....... .+ ..+.++.++.+|++|.+++++++++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 72 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DV---SDSERYVFEHADICDRAELDRIFAQH----- 72 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hc---ccCCceEEEEecCCCHHHHHHHHHhc-----
Confidence 5899999999999999999999986 44444432 1111111 11 11235778899999999999988753
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+||..... ...+..+..+++|+.|+.++++++.+.|...... ..+..++|++||.+.+
T Consensus 73 ~~d~vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~-------------~~~~~~~i~~SS~~vy 137 (352)
T PRK10084 73 QPDAVMHLAAESHVD--RSITGPAAFIETNIVGTYVLLEAARNYWSALDED-------------KKNAFRFHHISTDEVY 137 (352)
T ss_pred CCCEEEECCcccCCc--chhcCchhhhhhhhHHHHHHHHHHHHhccccccc-------------cccceeEEEecchhhc
Confidence 689999999975422 1223456789999999999999998776411000 1123589999997544
Q ss_pred cCCCCc---------ccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 301 RGTINK---------EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 301 ~~~~~~---------~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
...... ..+.+...+.+...|+.||.+.+.+++.++.++ |+.+..+.|+.+-.|...... .-+.+..
T Consensus 138 g~~~~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~vilr~~~v~Gp~~~~~~-~~~~~~~ 213 (352)
T PRK10084 138 GDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY---GLPTIVTNCSNNYGPYHFPEK-LIPLVIL 213 (352)
T ss_pred CCCCccccccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeccceeCCCcCccc-hHHHHHH
Confidence 321100 112333445667789999999999999988764 567777788777655421111 0011111
Q ss_pred HHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 372 VVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 372 ~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.... .++ ..-+..++|+|++++.++..+ ..|..|++.++.
T Consensus 214 ~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~----~~~~~yni~~~~ 262 (352)
T PRK10084 214 NALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEG----KAGETYNIGGHN 262 (352)
T ss_pred HHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcC----CCCceEEeCCCC
Confidence 1111 111 112467899999999888543 235666665443
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=158.49 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=134.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHH----------------HHHHHHHhhhcCCceEEEEEe
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKC----------------EKARKEVVLESKNKYVLCRKC 200 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~----------------~~~~~~l~~~~~~~~v~~~~~ 200 (429)
...+++|++|||||+|+||++++++|+++|++|++++|..... .+..+.+... .+.++.++.+
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~ 120 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-SGKEIELYVG 120 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-hCCcceEEEC
Confidence 5578899999999999999999999999999999987532100 0001111111 1235788999
Q ss_pred eCCCHHHHHHHHHHHHHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhh
Q psy12836 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIW 279 (429)
Q Consensus 201 Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~ 279 (429)
|++|.+++++++++. ++|+|||+|+..... ...++++++..+++|+.|++++++++...
T Consensus 121 Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~--------------- 180 (442)
T PLN02572 121 DICDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF--------------- 180 (442)
T ss_pred CCCCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 999999999988864 689999999764332 23344566778899999999999887532
Q ss_pred hhhcccCCCcEEEEEcCcccccCCC---CcccCC------CC---CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy12836 280 YYVFQESAPSRIINVSSVAHKRGTI---NKEDLN------SE---NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVN 347 (429)
Q Consensus 280 ~~~~~~~~~g~IV~vSS~~~~~~~~---~~~~l~------~~---~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn 347 (429)
....++|++||.+.+.... ....++ ++ ....+...|+.||.+.+.+++.++.. +|+.+.
T Consensus 181 ------gv~~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~---~gl~~v 251 (442)
T PLN02572 181 ------APDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRAT 251 (442)
T ss_pred ------CCCccEEEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHh---cCCCEE
Confidence 1124899999976543211 011110 01 12334568999999999888877664 589999
Q ss_pred EEeCCCccCCc
Q psy12836 348 AVHPGIVNTDI 358 (429)
Q Consensus 348 ~V~PG~v~T~~ 358 (429)
.+.|+.+-.+.
T Consensus 252 ~lR~~~vyGp~ 262 (442)
T PLN02572 252 DLNQGVVYGVR 262 (442)
T ss_pred EEecccccCCC
Confidence 99999987765
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=148.44 Aligned_cols=237 Identities=17% Similarity=0.079 Sum_probs=154.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|...........+.. . ..+..+.+|+++.++++++++. +++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~-----~~~d 72 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER-I--TRVTFVEGDLRDRELLDRLFEE-----HKID 72 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc-c--cceEEEECCCCCHHHHHHHHHh-----CCCc
Confidence 379999999999999999999999999887643322222222211 1 1467788999999999888764 4799
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++|||||...... ..+.....+++|+.++..+++.+. +.+.+++|++||.+.+ +.
T Consensus 73 ~vv~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~ss~~~~-g~ 127 (328)
T TIGR01179 73 AVIHFAGLIAVGE--SVQDPLKYYRNNVVNTLNLLEAMQ----------------------QTGVKKFIFSSSAAVY-GE 127 (328)
T ss_pred EEEECccccCcch--hhcCchhhhhhhHHHHHHHHHHHH----------------------hcCCCEEEEecchhhc-CC
Confidence 9999999764322 233455678899999998887653 2244699999986543 32
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC----CCCchhHHHHHHhHH--
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----SYYDSWLSTVVLKPL-- 377 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~----~~~~~~~~~~~~~~~-- 377 (429)
.......+.....+...|+.+|++.+.+++.++++. .++++..+.|+.+..+..... ......+...+....
T Consensus 128 ~~~~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (328)
T TIGR01179 128 PSSIPISEDSPLGPINPYGRSKLMSERILRDLSKAD--PGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVG 205 (328)
T ss_pred CCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHhc--cCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHh
Confidence 222223334444566789999999999999987652 479999999987766532110 000111111111000
Q ss_pred ------------h------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 378 ------------V------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 378 ------------~------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+ ..-+...+|+|++++.++.... ....|+.|++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~-~~~~~~~~n~~~~~~ 261 (328)
T TIGR01179 206 KRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLL-NGGESHVYNLGYGQG 261 (328)
T ss_pred CCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhh-cCCCcceEEcCCCCc
Confidence 0 0123568999999998885421 223466777766543
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=141.68 Aligned_cols=224 Identities=25% Similarity=0.265 Sum_probs=159.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
|+||||+|.||.+++++|+++|+.|+.+.|+.........+. ++.++.+|+.|.+.++++++.. .+|.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~-------~~~~~~~dl~~~~~~~~~~~~~-----~~d~ 68 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKL-------NVEFVIGDLTDKEQLEKLLEKA-----NIDV 68 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHT-------TEEEEESETTSHHHHHHHHHHH-----TESE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccc-------eEEEEEeecccccccccccccc-----CceE
Confidence 799999999999999999999999998888776544333322 5788899999999999999887 7999
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
+||+|+... ...+.+.....++.|+.+..++++.+.. .+..++|++||.. .++..
T Consensus 69 vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~----------------------~~~~~~i~~sS~~-~y~~~ 123 (236)
T PF01370_consen 69 VIHLAAFSS--NPESFEDPEEIIEANVQGTRNLLEAARE----------------------AGVKRFIFLSSAS-VYGDP 123 (236)
T ss_dssp EEEEBSSSS--HHHHHHSHHHHHHHHHHHHHHHHHHHHH----------------------HTTSEEEEEEEGG-GGTSS
T ss_pred EEEeecccc--cccccccccccccccccccccccccccc----------------------ccccccccccccc-ccccc
Confidence 999999754 1112245667788888887777777652 2347999999944 44443
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc--cCCCCCchhHHHHHHhHH--h--
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL--RHSSYYDSWLSTVVLKPL--V-- 378 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~--~~~~~~~~~~~~~~~~~~--~-- 378 (429)
...++.+.....+...|+.+|...+.+.+.+.++. ++++..+.|+.+-.+.. .......+.+...+...- .
T Consensus 124 ~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (236)
T PF01370_consen 124 DGEPIDEDSPINPLSPYGASKRAAEELLRDYAKKY---GLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP 200 (236)
T ss_dssp SSSSBETTSGCCHSSHHHHHHHHHHHHHHHHHHHH---TSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccchhhHHhhcCCccccc
Confidence 33444555555677789999999999999888764 79999999998877761 111111111222222111 1
Q ss_pred -----hhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 379 -----WLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 379 -----~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
..-+...+|+|++++.++..+. ..|+.|++
T Consensus 201 ~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~yNi 235 (236)
T PF01370_consen 201 GDGSQVRDFIHVDDLAEAIVAALENPK---AAGGIYNI 235 (236)
T ss_dssp STSSCEEEEEEHHHHHHHHHHHHHHSC---TTTEEEEE
T ss_pred CCCCCccceEEHHHHHHHHHHHHhCCC---CCCCEEEe
Confidence 1123568999999999997764 46777665
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-15 Score=147.49 Aligned_cols=232 Identities=19% Similarity=0.190 Sum_probs=146.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHH---HHHHHHhhhc-----CC-ceEEEEEeeCCCHH------
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCE---KARKEVVLES-----KN-KYVLCRKCDLASQE------ 206 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~---~~~~~l~~~~-----~~-~~v~~~~~Dls~~~------ 206 (429)
+++||||+|+||++++++|+++| ++|+++.|+.+... ...+.+.... .. .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 78999999865321 2222221110 00 36888999998652
Q ss_pred HHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 207 SIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 207 sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
....+. ..+|++|||||..... ..++..+++|+.++..+++.+. +.
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~-----~~~~~~~~~nv~g~~~ll~~a~----------------------~~ 126 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV-----YPYSELRAANVLGTREVLRLAA----------------------SG 126 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC-----CcHHHHhhhhhHHHHHHHHHHh----------------------hC
Confidence 222222 3689999999976421 2345667899999988887664 22
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSE-----NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~-----~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
+..+++++||.+....... ....+. ........|+.||.+.+.+.+.++. .|++++.+.||.+..+....
T Consensus 127 ~~~~~v~iSS~~v~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~i~Rpg~v~G~~~~g 201 (367)
T TIGR01746 127 RAKPLHYVSTISVLAAIDL-STVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASD----RGLPVTIVRPGRILGNSYTG 201 (367)
T ss_pred CCceEEEEccccccCCcCC-CCccccccccccccccCCChHHHHHHHHHHHHHHHh----cCCCEEEECCCceeecCCCC
Confidence 3456999999876543211 000110 1112345799999999988876543 38999999999998752221
Q ss_pred CCCCchhHHHHHHh-----HHh-----hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 362 SSYYDSWLSTVVLK-----PLV-----WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 362 ~~~~~~~~~~~~~~-----~~~-----~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.......+...+.. ..+ ..-+.+++++|++++.++..+. ...+|..|++.++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~~~~-~~~~~~~~~v~~~~ 264 (367)
T TIGR01746 202 AINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSSQPA-ASAGGPVFHVVNPE 264 (367)
T ss_pred CCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHhCCC-cccCCceEEecCCC
Confidence 11111112111111 011 0115678999999999986653 22347778877653
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-17 Score=153.45 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=150.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCce----EEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKY----VLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~----v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
||||||+|.||.+++++|++.+. +|++++|++.++-....+++...++.+ +..+.+|++|.+.+.+++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 79999999999999999999984 799999999999999888865544322 345578999999999988765
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+++|.|+.-+.+ +-++...+.+++|+.|+.++++++.. .+-.++|++|+--+
T Consensus 77 -~pdiVfHaAA~KhVp--l~E~~p~eav~tNv~GT~nv~~aa~~----------------------~~v~~~v~ISTDKA 131 (293)
T PF02719_consen 77 -KPDIVFHAAALKHVP--LMEDNPFEAVKTNVLGTQNVAEAAIE----------------------HGVERFVFISTDKA 131 (293)
T ss_dssp -T-SEEEE------HH--HHCCCHHHHHHHHCHHHHHHHHHHHH----------------------TT-SEEEEEEECGC
T ss_pred -CCCEEEEChhcCCCC--hHHhCHHHHHHHHHHHHHHHHHHHHH----------------------cCCCEEEEcccccc
Confidence 799999999976533 12235567799999999999998873 35679999999876
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH---
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP--- 376 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 376 (429)
.. |...||+||...+.+..+.+......+.++.+|.=|.|.-.-..- -+.+.+.+...
T Consensus 132 v~---------------PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSV----ip~F~~Qi~~g~Pl 192 (293)
T PF02719_consen 132 VN---------------PTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSV----IPLFKKQIKNGGPL 192 (293)
T ss_dssp SS-----------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSC----HHHHHHHHHTTSSE
T ss_pred CC---------------CCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcH----HHHHHHHHHcCCcc
Confidence 54 467899999999999999998877778999999999775432211 12232222221
Q ss_pred -----HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 -----LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 -----~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
-..+++.+++|+++.++.++.-. ..|+.|..+-|..
T Consensus 193 TvT~p~mtRffmti~EAv~Lvl~a~~~~----~~geifvl~mg~~ 233 (293)
T PF02719_consen 193 TVTDPDMTRFFMTIEEAVQLVLQAAALA----KGGEIFVLDMGEP 233 (293)
T ss_dssp EECETT-EEEEE-HHHHHHHHHHHHHH------TTEEEEE---TC
T ss_pred eeCCCCcEEEEecHHHHHHHHHHHHhhC----CCCcEEEecCCCC
Confidence 22356789999999999988432 3688877766543
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-15 Score=137.95 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=163.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+.+|||||.|.||.++++.+.++.- +|+.++.-.= ....+.+.....+.+..++++|+.|.+.+.+++++.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY--Agn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY--AGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc--cCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhc-----
Confidence 4689999999999999999998864 4666654210 011111222223347899999999999999998865
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+++|-|+-.+.. .+.++.+..+++|++|++.+++++..+.. .-|++.||.-.-
T Consensus 74 ~~D~VvhfAAESHVD--RSI~~P~~Fi~TNv~GT~~LLEaar~~~~---------------------~frf~HISTDEV- 129 (340)
T COG1088 74 QPDAVVHFAAESHVD--RSIDGPAPFIQTNVVGTYTLLEAARKYWG---------------------KFRFHHISTDEV- 129 (340)
T ss_pred CCCeEEEechhcccc--ccccChhhhhhcchHHHHHHHHHHHHhcc---------------------cceEEEeccccc-
Confidence 789999999977633 34555666789999999999999876542 148999998543
Q ss_pred cCCCCcc--cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh---
Q psy12836 301 RGTINKE--DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK--- 375 (429)
Q Consensus 301 ~~~~~~~--~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~--- 375 (429)
+|..... .+.+..++.|.++|+||||+..+|++++.+- .|+.+....+..--.|..-. +.+...+..
T Consensus 130 YG~l~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~T---Yglp~~ItrcSNNYGPyqfp-----EKlIP~~I~nal 201 (340)
T COG1088 130 YGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRT---YGLPATITRCSNNYGPYQFP-----EKLIPLMIINAL 201 (340)
T ss_pred cccccCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHH---cCCceEEecCCCCcCCCcCc-----hhhhHHHHHHHH
Confidence 4444333 3557778999999999999999999999986 56888877776544443211 112222111
Q ss_pred ---HHhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 ---PLVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ---~~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
++|. .-+.-++|=++++-..+... .-|+.+++.|+....
T Consensus 202 ~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg----~~GE~YNIgg~~E~~ 250 (340)
T COG1088 202 LGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKG----KIGETYNIGGGNERT 250 (340)
T ss_pred cCCCCceecCCcceeeeEEeHhHHHHHHHHHhcC----cCCceEEeCCCccch
Confidence 2221 12346899999998888553 249999999987654
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=140.89 Aligned_cols=167 Identities=22% Similarity=0.218 Sum_probs=133.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+++|||||+|-||.+++.+|++.|++|++++.-.....+..... ...+++.|+.|.+.+++++++. +|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~~~L~~vf~~~-----~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDRALLTAVFEEN-----KI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccHHHHHHHHHhc-----CC
Confidence 36999999999999999999999999999987654444333322 1568899999999999998875 89
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|.|||.||...-++ +.+...+.++.|+.|+..|++++. +.+..+||| ||.++.+|
T Consensus 69 daViHFAa~~~VgE--Sv~~Pl~Yy~NNv~gTl~Ll~am~----------------------~~gv~~~vF-SStAavYG 123 (329)
T COG1087 69 DAVVHFAASISVGE--SVQNPLKYYDNNVVGTLNLIEAML----------------------QTGVKKFIF-SSTAAVYG 123 (329)
T ss_pred CEEEECccccccch--hhhCHHHHHhhchHhHHHHHHHHH----------------------HhCCCEEEE-ecchhhcC
Confidence 99999999865443 456677889999999998887765 334567777 55577888
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAV 349 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V 349 (429)
.+...++.+.....+..+|+.||...+.+.+.+++... .++.++
T Consensus 124 ~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~~---~~~v~L 167 (329)
T COG1087 124 EPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANP---FKVVIL 167 (329)
T ss_pred CCCCcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 87777788877777889999999999999999988643 555444
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=146.21 Aligned_cols=240 Identities=13% Similarity=0.122 Sum_probs=150.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...++.++|+||||+|.||++++++|+++ |++|++++|+.++......... .....++.++.+|++|.++++++++
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~-- 85 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIK-- 85 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhh--
Confidence 44556678999999999999999999998 5999999987665433221100 0011258889999999988877765
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+|+|||+|+...+... ..+....+..|+.++.++++++. +.+ .++|++|
T Consensus 86 -----~~d~ViHlAa~~~~~~~--~~~~~~~~~~n~~gt~~ll~aa~----------------------~~~-~r~v~~S 135 (386)
T PLN02427 86 -----MADLTINLAAICTPADY--NTRPLDTIYSNFIDALPVVKYCS----------------------ENN-KRLIHFS 135 (386)
T ss_pred -----cCCEEEEcccccChhhh--hhChHHHHHHHHHHHHHHHHHHH----------------------hcC-CEEEEEe
Confidence 36999999997643211 11223345679999888877653 222 6899999
Q ss_pred CcccccCCCC-----cccCCC---------CCC---C----CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc
Q psy12836 296 SVAHKRGTIN-----KEDLNS---------ENS---Y----DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354 (429)
Q Consensus 296 S~~~~~~~~~-----~~~l~~---------~~~---~----~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v 354 (429)
|.+.+..... ..++.+ ... + .+...|+.||.+.+.+++.++.. .|+.+..+.|+.|
T Consensus 136 S~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilR~~~v 212 (386)
T PLN02427 136 TCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE---NGLEFTIVRPFNW 212 (386)
T ss_pred eeeeeCCCcCCCCCcccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh---cCCceEEecccce
Confidence 9764322110 001100 000 0 12346999999999888776543 5899999999988
Q ss_pred cCCcccCC----C--CCchhHH----HHHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 355 NTDILRHS----S--YYDSWLS----TVVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 355 ~T~~~~~~----~--~~~~~~~----~~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
-.+..... . ...+.+. ..+.. ++. ..-+...+|+|++++.++..+. ...|..|++.++
T Consensus 213 yGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~--~~~g~~yni~~~ 289 (386)
T PLN02427 213 IGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPA--RANGHIFNVGNP 289 (386)
T ss_pred eCCCCCccccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcc--cccCceEEeCCC
Confidence 77643210 0 0001111 11111 110 0124679999999999886542 135677777654
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=143.54 Aligned_cols=230 Identities=20% Similarity=0.155 Sum_probs=152.3
Q ss_pred EEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 146 IVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 146 LITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
|||||+|.||.+++++|+++| ++|.++++....... ..+.. . ....++.+|++|.+++.++++ ..|
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~-~--~~~~~~~~Di~d~~~l~~a~~-------g~d 68 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK-S--GVKEYIQGDITDPESLEEALE-------GVD 68 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc-c--cceeEEEeccccHHHHHHHhc-------CCc
Confidence 699999999999999999999 789888876643221 11111 1 123388999999999999887 459
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+|+...... ....+.++++|+.|+-++++++. +.+-.++|++||.+.....
T Consensus 69 ~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~nvl~aa~----------------------~~~VkrlVytSS~~vv~~~ 123 (280)
T PF01073_consen 69 VVFHTAAPVPPWG---DYPPEEYYKVNVDGTRNVLEAAR----------------------KAGVKRLVYTSSISVVFDN 123 (280)
T ss_pred eEEEeCccccccC---cccHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEcCcceeEec
Confidence 9999999764332 34467789999999999998776 3356799999999887652
Q ss_pred CCcccC---CCCCCCC--CcchhHHHHHHHHHHHHHHHH-Hhc-CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 304 INKEDL---NSENSYD--PTQAYNQSKLANVLFTRELAK-RLE-GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 304 ~~~~~l---~~~~~~~--~~~~Y~aSKaal~~l~~~la~-el~-~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
....++ ++...++ ....|+.||+..+.++..... ++. ...++..+|+|..|-.|....... .+.+.....
T Consensus 124 ~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~---~~~~~~~~g 200 (280)
T PF01073_consen 124 YKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVP---RLVKMVRSG 200 (280)
T ss_pred cCCCCcccCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccc---hhhHHHHhc
Confidence 222222 2222222 456899999999988876554 111 125899999999887775433221 111111111
Q ss_pred ---Hh------hhccCCHHHHHHHHHHHhcC---C-CcccCCceEEecCccc
Q psy12836 377 ---LV------WLFIKSPRQGAQTIVYASLD---P-SLENVSGKYFACYDRY 415 (429)
Q Consensus 377 ---~~------~~~~~~peevA~~iv~l~~~---~-~~~~vtG~~i~~~gg~ 415 (429)
.. ..-+..++++|.+.+.++.. + ....+.|+.|.+..+.
T Consensus 201 ~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~ 252 (280)
T PF01073_consen 201 LFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGE 252 (280)
T ss_pred ccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCC
Confidence 00 11145689999999876532 1 1345789876655543
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=139.01 Aligned_cols=224 Identities=17% Similarity=0.117 Sum_probs=141.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH--hCCCe
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK--ENKKI 222 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~--~~g~i 222 (429)
++||||+|.||++++++|+++|++++++.|+....... .. ...+|+.|..+.+.+++++.+ .++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 69 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN-----------LVDLDIADYMDKEDFLAQIMAGDDFGDI 69 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh-----------hhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence 79999999999999999999999777776654332110 00 124577776666666665542 34689
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+|||+||...... .. .+..++.|+.++.++++++. +.+ .++|++||.+.+ +
T Consensus 70 d~Vih~A~~~~~~~-~~---~~~~~~~n~~~t~~ll~~~~----------------------~~~-~~~i~~SS~~vy-g 121 (308)
T PRK11150 70 EAIFHEGACSSTTE-WD---GKYMMDNNYQYSKELLHYCL----------------------ERE-IPFLYASSAATY-G 121 (308)
T ss_pred cEEEECceecCCcC-CC---hHHHHHHHHHHHHHHHHHHH----------------------HcC-CcEEEEcchHHh-C
Confidence 99999998654321 12 23468999999888888764 222 379999997654 3
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc---hhHHHHHHhH---
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD---SWLSTVVLKP--- 376 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~---~~~~~~~~~~--- 376 (429)
........+.....+...|+.||.+.+.+.+.++.+ .++.+..+.|+.+-.+......... ..+...+...
T Consensus 122 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (308)
T PRK11150 122 GRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPE---ANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENP 198 (308)
T ss_pred cCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCC
Confidence 222222333333456678999999999988877654 4789999999888765432211100 1111112211
Q ss_pred -Hh------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 -LV------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 -~~------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+. ..-+...+|+|++++.++..+ . |..+++.++..
T Consensus 199 ~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~----~-~~~yni~~~~~ 240 (308)
T PRK11150 199 KLFEGSENFKRDFVYVGDVAAVNLWFWENG----V-SGIFNCGTGRA 240 (308)
T ss_pred EEecCCCceeeeeeeHHHHHHHHHHHHhcC----C-CCeEEcCCCCc
Confidence 11 012357899999999888542 1 34667765543
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=137.46 Aligned_cols=224 Identities=21% Similarity=0.131 Sum_probs=150.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
||||||+|.||.+++++|+++|++|+.++|...+..... ..+.++.+|+++.+.+..+++.. . |+
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~-----~-d~ 67 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGV-----P-DA 67 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcC-----C-CE
Confidence 999999999999999999999999999999876544322 24677889999985555555432 2 99
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
+||+|+.......... ..+..+.+|+.++.++++++.. .+..++|+.||.+...+..
T Consensus 68 vih~aa~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~----------------------~~~~~~v~~ss~~~~~~~~ 124 (314)
T COG0451 68 VIHLAAQSSVPDSNAS-DPAEFLDVNVDGTLNLLEAARA----------------------AGVKRFVFASSVSVVYGDP 124 (314)
T ss_pred EEEccccCchhhhhhh-CHHHHHHHHHHHHHHHHHHHHH----------------------cCCCeEEEeCCCceECCCC
Confidence 9999998754422222 4556889999999999888763 3567999977666555431
Q ss_pred CcccCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--CchhHHHHHHhHHh-hh
Q psy12836 305 NKEDLNSE-NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSWLSTVVLKPLV-WL 380 (429)
Q Consensus 305 ~~~~l~~~-~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~-~~ 380 (429)
......+. ....+...|+.||.+.+.+++..+. ..|+.+..+.|+.+--+....... ....+........+ ..
T Consensus 125 ~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~---~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (314)
T COG0451 125 PPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYAR---LYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIV 201 (314)
T ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH---HhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcce
Confidence 11123333 2333444899999999999998887 568999999999776554332210 00111111111111 01
Q ss_pred ---------ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 381 ---------FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 381 ---------~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
-+...+|+|++++.++..+. .+ .+++..+
T Consensus 202 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~~----~~-~~ni~~~ 239 (314)
T COG0451 202 IGGDGSQTRDFVYVDDVADALLLALENPD----GG-VFNIGSG 239 (314)
T ss_pred EeCCCceeEeeEeHHHHHHHHHHHHhCCC----Cc-EEEeCCC
Confidence 13558999999999997653 23 6666554
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=144.99 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=144.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH--HHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK--ARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~--~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
....++++++||||+|+||++++++|+++|++|++++|+..+... ...++.... ..+.++.+|++|.++++++++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhc--CCceEEEeeCCCHHHHHHHHHH
Confidence 445678899999999999999999999999999999998765431 111111111 2577889999999999998875
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
. .+++|+||||+|..... ....+++|+.++.++++++. +.+.+++|++
T Consensus 133 ~---~~~~D~Vi~~aa~~~~~-------~~~~~~vn~~~~~~ll~aa~----------------------~~gv~r~V~i 180 (390)
T PLN02657 133 E---GDPVDVVVSCLASRTGG-------VKDSWKIDYQATKNSLDAGR----------------------EVGAKHFVLL 180 (390)
T ss_pred h---CCCCcEEEECCccCCCC-------CccchhhHHHHHHHHHHHHH----------------------HcCCCEEEEE
Confidence 4 12689999999853211 12335678888777766653 3345799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~ 371 (429)
||.+.. .+...|..+|...+...+. ...|+++..|.|+.+-.++..... ...+..
T Consensus 181 SS~~v~---------------~p~~~~~~sK~~~E~~l~~-----~~~gl~~tIlRp~~~~~~~~~~~~~~~~g~~~~-- 238 (390)
T PLN02657 181 SAICVQ---------------KPLLEFQRAKLKFEAELQA-----LDSDFTYSIVRPTAFFKSLGGQVEIVKDGGPYV-- 238 (390)
T ss_pred eecccc---------------CcchHHHHHHHHHHHHHHh-----ccCCCCEEEEccHHHhcccHHHHHhhccCCceE--
Confidence 997642 2345688999988776543 246899999999866433211000 000000
Q ss_pred HHH-hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 372 VVL-KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 372 ~~~-~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.+. ....+....+.+|+|..++.++.++. ..|+.+++.|+
T Consensus 239 ~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~---~~~~~~~Iggp 279 (390)
T PLN02657 239 MFGDGKLCACKPISEADLASFIADCVLDES---KINKVLPIGGP 279 (390)
T ss_pred EecCCcccccCceeHHHHHHHHHHHHhCcc---ccCCEEEcCCC
Confidence 000 00011123678999999999986542 24778888663
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=137.73 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=146.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC-CHHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA-SQESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls-~~~sv~~~~~~i~~~~g 220 (429)
++|+||||+|.||++++++|+++ |++|++++|+.++... +. +...+.++.+|++ +.+.+.++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~----~~---~~~~~~~~~~Dl~~~~~~~~~~~~------- 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD----LV---NHPRMHFFEGDITINKEWIEYHVK------- 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH----hc---cCCCeEEEeCCCCCCHHHHHHHHc-------
Confidence 57999999999999999999986 6999999987644322 11 1125788899998 6666555443
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+|+...+.. ..++.+..+++|+.++.+++.++. +.+ .++|++||...+
T Consensus 68 ~~d~ViH~aa~~~~~~--~~~~p~~~~~~n~~~~~~ll~aa~----------------------~~~-~~~v~~SS~~vy 122 (347)
T PRK11908 68 KCDVILPLVAIATPAT--YVKQPLRVFELDFEANLPIVRSAV----------------------KYG-KHLVFPSTSEVY 122 (347)
T ss_pred CCCEEEECcccCChHH--hhcCcHHHHHHHHHHHHHHHHHHH----------------------hcC-CeEEEEecceee
Confidence 5799999999754321 123345678899999988877664 223 699999997543
Q ss_pred cCCCCcccCCCCCC-------CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-------CCCc
Q psy12836 301 RGTINKEDLNSENS-------YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-------SYYD 366 (429)
Q Consensus 301 ~~~~~~~~l~~~~~-------~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-------~~~~ 366 (429)
+......+.++.. ..+...|+.||.+.+.+.+.++.+ .|+.+..+.|+.+-.+..... ...-
T Consensus 123 -g~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~---~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i 198 (347)
T PRK11908 123 -GMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGME---EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVV 198 (347)
T ss_pred -ccCCCcCcCccccccccCcCCCccchHHHHHHHHHHHHHHHHHH---cCCCeEEEeeeeeeCCCccCCCccccCCcchH
Confidence 3211112222211 123457999999999988887754 578888899987766542211 0000
Q ss_pred hhHHHHHHh--HH-------hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 367 SWLSTVVLK--PL-------VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 367 ~~~~~~~~~--~~-------~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..+...+.. ++ ...-+...+|+|++++.++..+. ....|+.|++.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~-~~~~g~~yni~~~ 254 (347)
T PRK11908 199 TQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKD-GVASGKIYNIGNP 254 (347)
T ss_pred HHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCcc-ccCCCCeEEeCCC
Confidence 111111111 10 11235789999999999986542 1134677777653
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=133.75 Aligned_cols=192 Identities=18% Similarity=0.197 Sum_probs=132.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
++||||+|+||.+++++|+++|++|++++|+ .+|+.+.++++++++.. ++|+
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~-----~~d~ 53 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAI-----RPDA 53 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhC-----CCCE
Confidence 7999999999999999999999999999884 36999999998887653 6899
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
+||+||...... .....+..+++|+.++.++++++. +.+ .++|++||.+.+.+ .
T Consensus 54 vi~~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~-~~~v~~Ss~~vy~~-~ 107 (287)
T TIGR01214 54 VVNTAAYTDVDG--AESDPEKAFAVNALAPQNLARAAA----------------------RHG-ARLVHISTDYVFDG-E 107 (287)
T ss_pred EEECCccccccc--cccCHHHHHHHHHHHHHHHHHHHH----------------------HcC-CeEEEEeeeeeecC-C
Confidence 999999754221 122345678899999988888764 222 48999999654322 2
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--HHh----
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK--PLV---- 378 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~--~~~---- 378 (429)
...++.+.....+...|+.+|.+.+.+++.+ +..+..+.|+.+-.+...... ...+...... +++
T Consensus 108 ~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~-------~~~~~ilR~~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~ 178 (287)
T TIGR01214 108 GKRPYREDDATNPLNVYGQSKLAGEQAIRAA-------GPNALIVRTSWLYGGGGGRNF--VRTMLRLAGRGEELRVVDD 178 (287)
T ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHHHHHh-------CCCeEEEEeeecccCCCCCCH--HHHHHHHhhcCCCceEecC
Confidence 2223333333445678999999988877654 457899999988766421110 0111111111 110
Q ss_pred -hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 -WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 -~~~~~~peevA~~iv~l~~~~ 399 (429)
+.-+...+|+|++++.++..+
T Consensus 179 ~~~~~v~v~Dva~a~~~~~~~~ 200 (287)
T TIGR01214 179 QIGSPTYAKDLARVIAALLQRL 200 (287)
T ss_pred CCcCCcCHHHHHHHHHHHHhhc
Confidence 112345799999999998654
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-14 Score=149.75 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=150.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH-HHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQES-IRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s-v~~~~~~i~~ 217 (429)
-++++|+||||+|.||.+++++|+++ |++|+.++|+....... . ...++.++.+|++|..+ ++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~----~---~~~~~~~~~gDl~d~~~~l~~~l~---- 381 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF----L---GHPRFHFVEGDISIHSEWIEYHIK---- 381 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh----c---CCCceEEEeccccCcHHHHHHHhc----
Confidence 36889999999999999999999986 79999999976433211 1 11257788999998654 333332
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+|||+||...+.. ..+..+..+++|+.++.++++++. +.+ .++|++||.
T Consensus 382 ---~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~~t~~ll~a~~----------------------~~~-~~~V~~SS~ 433 (660)
T PRK08125 382 ---KCDVVLPLVAIATPIE--YTRNPLRVFELDFEENLKIIRYCV----------------------KYN-KRIIFPSTS 433 (660)
T ss_pred ---CCCEEEECccccCchh--hccCHHHHHHhhHHHHHHHHHHHH----------------------hcC-CeEEEEcch
Confidence 5799999999765432 112334578899999998887765 223 589999997
Q ss_pred ccccCCCCcccCCCCCCC-------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-------
Q psy12836 298 AHKRGTINKEDLNSENSY-------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS------- 363 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~-------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~------- 363 (429)
+.+ +......+.+.... .+...|+.||.+.+.+++.++++ .|+++..+.|+.+..|......
T Consensus 434 ~vy-g~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~---~g~~~~ilR~~~vyGp~~~~~~~~~~~~~ 509 (660)
T PRK08125 434 EVY-GMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEK---EGLRFTLFRPFNWMGPRLDNLNAARIGSS 509 (660)
T ss_pred hhc-CCCCCCCcCccccccccCCCCCCccchHHHHHHHHHHHHHHHHh---cCCceEEEEEceeeCCCcccccccccccc
Confidence 543 32211122222211 23457999999999999888765 4799999999988766432110
Q ss_pred CCchhHHHHHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 364 YYDSWLSTVVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 364 ~~~~~~~~~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..-..+...+.. ++. ..-+...+|+|++++.++..+. ....|+.|++.++
T Consensus 510 ~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~-~~~~g~iyni~~~ 568 (660)
T PRK08125 510 RAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKD-NRCDGQIINIGNP 568 (660)
T ss_pred chHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccc-cccCCeEEEcCCC
Confidence 000111111111 111 1124579999999999885431 2235777777665
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-13 Score=146.02 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=150.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKR--KAKVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.++|+||||||+|.||++++++|+++ |++|+.++|.. +.... +.......++.++.+|++|.+.+..++..
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~----l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~- 78 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKN----LNPSKSSPNFKFVKGDIASADLVNYLLIT- 78 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhh----hhhcccCCCeEEEECCCCChHHHHHHHhh-
Confidence 46789999999999999999999998 67898888742 12211 11111123578889999999887665432
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++|+|||+|+...... ..++....+++|+.++.++++++.. .....++|++|
T Consensus 79 ----~~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a~~~---------------------~~~vkr~I~~S 131 (668)
T PLN02260 79 ----EGIDTIMHFAAQTHVDN--SFGNSFEFTKNNIYGTHVLLEACKV---------------------TGQIRRFIHVS 131 (668)
T ss_pred ----cCCCEEEECCCccCchh--hhhCHHHHHHHHHHHHHHHHHHHHh---------------------cCCCcEEEEEc
Confidence 36899999999864321 1223345678999998888877642 11246999999
Q ss_pred CcccccCCCCccc---CCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 296 SVAHKRGTINKED---LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 296 S~~~~~~~~~~~~---l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
|...+ +...... ..+.....+...|+.||.+.+.+++.++.+ .++.+..+.|+.|-.+...... ..+.+...
T Consensus 132 S~~vy-g~~~~~~~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~---~~l~~vilR~~~VyGp~~~~~~-~i~~~~~~ 206 (668)
T PLN02260 132 TDEVY-GETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS---YGLPVITTRGNNVYGPNQFPEK-LIPKFILL 206 (668)
T ss_pred chHHh-CCCccccccCccccCCCCCCCCcHHHHHHHHHHHHHHHHH---cCCCEEEECcccccCcCCCccc-HHHHHHHH
Confidence 97543 3221111 112222335668999999999999888765 4789999999988765421111 01111111
Q ss_pred HHh--HHhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 373 VLK--PLVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~--~~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
... +++. .-+...+|+|++++.++..+ ..|..|++.++.
T Consensus 207 a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~----~~~~vyni~~~~ 254 (668)
T PLN02260 207 AMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG----EVGHVYNIGTKK 254 (668)
T ss_pred HhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcC----CCCCEEEECCCC
Confidence 111 1111 12456999999999887443 235566665543
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=136.06 Aligned_cols=229 Identities=14% Similarity=0.043 Sum_probs=146.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++|+|+||||+|.||+++++.|.++|++|++++|...... . .. .....++.+|+++.+.+..+++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~---~---~~--~~~~~~~~~Dl~d~~~~~~~~~------- 84 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM---S---ED--MFCHEFHLVDLRVMENCLKVTK------- 84 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc---c---cc--cccceEEECCCCCHHHHHHHHh-------
Confidence 6789999999999999999999999999999998643211 0 00 0124567889999887766553
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+|+....... ........+..|+.++.++++++. +.+..++|++||...+
T Consensus 85 ~~D~Vih~Aa~~~~~~~-~~~~~~~~~~~N~~~t~nll~aa~----------------------~~~vk~~V~~SS~~vY 141 (370)
T PLN02695 85 GVDHVFNLAADMGGMGF-IQSNHSVIMYNNTMISFNMLEAAR----------------------INGVKRFFYASSACIY 141 (370)
T ss_pred CCCEEEEcccccCCccc-cccCchhhHHHHHHHHHHHHHHHH----------------------HhCCCEEEEeCchhhc
Confidence 47999999986532211 111223456789999888887764 2244699999997543
Q ss_pred cCCCCcc----cCCCCC--CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHH
Q psy12836 301 RGTINKE----DLNSEN--SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLST 371 (429)
Q Consensus 301 ~~~~~~~----~l~~~~--~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~ 371 (429)
+..... .+.+.. ...+...|+.+|.+.+.+++.++.. .|+++..+.|+.+-.|...... .....+..
T Consensus 142 -g~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~---~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~ 217 (370)
T PLN02695 142 -PEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKD---FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCR 217 (370)
T ss_pred -CCccccCcCCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCEEEEEECCccCCCCCccccccccHHHHHH
Confidence 321110 122221 3456778999999999999887664 4799999999988776421110 00111222
Q ss_pred HHHh---HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLK---PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~---~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.. ++. ..-+...+|++++++.++..+ .+..|++.++..
T Consensus 218 ~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~-----~~~~~nv~~~~~ 267 (370)
T PLN02695 218 KALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEM 267 (370)
T ss_pred HHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhcc-----CCCceEecCCCc
Confidence 1111 111 112467899999999987543 134556655433
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=129.48 Aligned_cols=225 Identities=15% Similarity=0.057 Sum_probs=140.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
||||||+|.||.++++.|+++|+ .|++++|..... .. .++ ....+..|+++.+.++.+.++ .++++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~-------~~~~~~~d~~~~~~~~~~~~~---~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNL-------ADLVIADYIDKEDFLDRLEKG---AFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhh-------hheeeeccCcchhHHHHHHhh---ccCCCC
Confidence 68999999999999999999998 688887654321 11 111 012456788887776665543 346899
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+|+.... ..++.+..+++|+.++.++++.+.. .+ .++|++||... ++.
T Consensus 69 ~vvh~A~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~----------------------~~-~~~v~~SS~~v-y~~ 120 (314)
T TIGR02197 69 AIFHQGACSDT----TETDGEYMMENNYQYSKRLLDWCAE----------------------KG-IPFIYASSAAT-YGD 120 (314)
T ss_pred EEEECccccCc----cccchHHHHHHHHHHHHHHHHHHHH----------------------hC-CcEEEEccHHh-cCC
Confidence 99999997532 2334567889999999888887642 22 47999999654 332
Q ss_pred CCcccCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHHHHHHh--HH
Q psy12836 304 INKEDLNSENS-YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLSTVVLK--PL 377 (429)
Q Consensus 304 ~~~~~l~~~~~-~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~~~~~~--~~ 377 (429)
.. ..+.++.. ..+...|+.||.+.+.+++....+. ..++.+..+.|+.+-.+........ -..+...+.. ++
T Consensus 121 ~~-~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (314)
T TIGR02197 121 GE-AGFREGRELERPLNVYGYSKFLFDQYVRRRVLPE-ALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNV 198 (314)
T ss_pred CC-CCcccccCcCCCCCHHHHHHHHHHHHHHHHhHhh-ccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCe
Confidence 21 22333322 2356789999999999887643321 2357888888887765542211100 0011111111 01
Q ss_pred h-------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 378 V-------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 378 ~-------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
. ..-+...+|+|++++.++... .|..|++.++..
T Consensus 199 ~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~~-----~~~~yni~~~~~ 245 (314)
T TIGR02197 199 KLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLENG-----VSGIFNLGTGRA 245 (314)
T ss_pred EEecCccccCCCCceeeeEEHHHHHHHHHHHHhcc-----cCceEEcCCCCC
Confidence 0 012567899999999998541 344666665543
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-13 Score=136.17 Aligned_cols=235 Identities=13% Similarity=0.055 Sum_probs=147.1
Q ss_pred cccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHH
Q psy12836 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 132 ~~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~ 211 (429)
.+.+-....++++|+||||+|.||++++++|+++|++|++++|......+ .+.......++..+..|+.+..
T Consensus 109 ~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~---~~~~~~~~~~~~~i~~D~~~~~----- 180 (442)
T PLN02206 109 GKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE---NVMHHFSNPNFELIRHDVVEPI----- 180 (442)
T ss_pred CcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhhhhccCCceEEEECCccChh-----
Confidence 33444556678999999999999999999999999999998875432111 1111112235677788886652
Q ss_pred HHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+ ..+|+|||+|+...+.. ..++.+..+++|+.++.++++++. +.+ .++
T Consensus 181 l-------~~~D~ViHlAa~~~~~~--~~~~p~~~~~~Nv~gt~nLleaa~----------------------~~g-~r~ 228 (442)
T PLN02206 181 L-------LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAK----------------------RVG-ARF 228 (442)
T ss_pred h-------cCCCEEEEeeeecchhh--hhcCHHHHHHHHHHHHHHHHHHHH----------------------HhC-CEE
Confidence 1 25799999999764321 112345678999999999988774 223 489
Q ss_pred EEEcCcccccCCCCcccCCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-CCC
Q psy12836 292 INVSSVAHKRGTINKEDLNSE-----NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-SYY 365 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~-----~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~~~ 365 (429)
|++||...+... ...+..+. +...+...|+.||.+.+.+++.+.+. .|+++..+.|+.+-.+..... ...
T Consensus 229 V~~SS~~VYg~~-~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~---~g~~~~ilR~~~vyGp~~~~~~~~~ 304 (442)
T PLN02206 229 LLTSTSEVYGDP-LQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---ANVEVRIARIFNTYGPRMCIDDGRV 304 (442)
T ss_pred EEECChHHhCCC-CCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHH---hCCCeEEEEeccccCCCCCccccch
Confidence 999997654322 11112221 12334578999999999888877654 468888898887765532111 000
Q ss_pred chhHHHHHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 366 DSWLSTVVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 366 ~~~~~~~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
-..+...... ++. ..-+...+|+|++++.++..+ ..| .|++.++.
T Consensus 305 v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~----~~g-~yNIgs~~ 358 (442)
T PLN02206 305 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPG 358 (442)
T ss_pred HHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcC----CCc-eEEEcCCC
Confidence 0111111111 111 112467899999999988432 234 56666554
|
|
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=127.74 Aligned_cols=169 Identities=23% Similarity=0.221 Sum_probs=129.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+++||||||+|.||.+++.+|.++|+.|++++.-........+.++.... ...+.+.+.|+.|.+.++++++..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~----- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV----- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-----
Confidence 68999999999999999999999999999997643333333333333222 357999999999999999999887
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
.+|.|+|-|+.....+ +.+...+..+.|+.|+++++..+. +.+...+|+.|| +..
T Consensus 77 ~fd~V~Hfa~~~~vge--S~~~p~~Y~~nNi~gtlnlLe~~~----------------------~~~~~~~V~sss-atv 131 (343)
T KOG1371|consen 77 KFDAVMHFAALAAVGE--SMENPLSYYHNNIAGTLNLLEVMK----------------------AHNVKALVFSSS-ATV 131 (343)
T ss_pred CCceEEeehhhhccch--hhhCchhheehhhhhHHHHHHHHH----------------------HcCCceEEEecc-eee
Confidence 5899999999765443 344557788999999998887665 233578888777 555
Q ss_pred cCCCCcccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhc
Q psy12836 301 RGTINKEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLE 340 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~ 340 (429)
++.+..-++.++..- .+...|+.+|.+++...+.+..-+.
T Consensus 132 YG~p~~ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~~ 172 (343)
T KOG1371|consen 132 YGLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYG 172 (343)
T ss_pred ecCcceeeccCcCCCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence 666666666665543 4888999999999999988887654
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=130.85 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=112.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++|||||+|.||++++++|+++| +|+.++|... .+..|++|.+.+++++++. ++|
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~-----~~D 56 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKI-----RPD 56 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhc-----CCC
Confidence 69999999999999999999999 7888877521 1357999999998888753 589
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+|+...... ..++.+..+.+|+.++.++++++.. .+ .++|++||...+ +.
T Consensus 57 ~Vih~Aa~~~~~~--~~~~~~~~~~~N~~~~~~l~~aa~~----------------------~g-~~~v~~Ss~~Vy-~~ 110 (299)
T PRK09987 57 VIVNAAAHTAVDK--AESEPEFAQLLNATSVEAIAKAANE----------------------VG-AWVVHYSTDYVF-PG 110 (299)
T ss_pred EEEECCccCCcch--hhcCHHHHHHHHHHHHHHHHHHHHH----------------------cC-CeEEEEccceEE-CC
Confidence 9999999865321 2233456678999999988887652 22 489999986644 32
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
....++.+.....+...|+.||.+.+.+++..+. ....+.|+.+-.+
T Consensus 111 ~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~-------~~~ilR~~~vyGp 157 (299)
T PRK09987 111 TGDIPWQETDATAPLNVYGETKLAGEKALQEHCA-------KHLIFRTSWVYAG 157 (299)
T ss_pred CCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCC-------CEEEEecceecCC
Confidence 2223344544556777899999999988765532 2366667666544
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-13 Score=129.13 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=137.2
Q ss_pred EEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeEE
Q psy12836 146 IVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVL 225 (429)
Q Consensus 146 LITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~l 225 (429)
+||||+|.||.++++.|+++|++|+++.+. ..+|+++.++++++++.. ++|+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~-----~~d~V 53 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKE-----KPTYV 53 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhcc-----CCCEE
Confidence 699999999999999999999988765432 147999999888887653 67999
Q ss_pred EEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCC
Q psy12836 226 INNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTIN 305 (429)
Q Consensus 226 I~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~ 305 (429)
||+|+....... ..+..+..+++|+.++.++++.+. +.+.+++|++||... ++...
T Consensus 54 ih~A~~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~----------------------~~~~~~~i~~SS~~v-yg~~~ 109 (306)
T PLN02725 54 ILAAAKVGGIHA-NMTYPADFIRENLQIQTNVIDAAY----------------------RHGVKKLLFLGSSCI-YPKFA 109 (306)
T ss_pred EEeeeeecccch-hhhCcHHHHHHHhHHHHHHHHHHH----------------------HcCCCeEEEeCceee-cCCCC
Confidence 999997532111 112234567889999888888775 223468999999654 33222
Q ss_pred cccCCCCC----CCCC-cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC---CCCchhHHHHHH---
Q psy12836 306 KEDLNSEN----SYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS---SYYDSWLSTVVL--- 374 (429)
Q Consensus 306 ~~~l~~~~----~~~~-~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~---~~~~~~~~~~~~--- 374 (429)
..+.++.. ...+ ...|+.||.+.+.+.+.+..+ .++++..+.|+.+-.+..... ....+.+...+.
T Consensus 110 ~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~ 186 (306)
T PLN02725 110 PQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQ---YGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAK 186 (306)
T ss_pred CCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHH---hCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHh
Confidence 22233221 1122 235999999999888887665 379999999998876642110 000111111111
Q ss_pred -h--HHh--------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 -K--PLV--------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 -~--~~~--------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
. +.. ...+..++|+|++++.++..+. .+..+++.++..
T Consensus 187 ~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~----~~~~~ni~~~~~ 235 (306)
T PLN02725 187 ANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYS----GAEHVNVGSGDE 235 (306)
T ss_pred hcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccc----cCcceEeCCCCc
Confidence 0 110 1235678999999999986531 223346655433
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=132.14 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=146.1
Q ss_pred cCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.+-...-+.++|+||||+|.||++++++|+++|++|++++|...........+ ....++.++..|+.+.. +
T Consensus 112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~---~~~~~~~~~~~Di~~~~-----~- 182 (436)
T PLN02166 112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHL---FGNPRFELIRHDVVEPI-----L- 182 (436)
T ss_pred CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhh---ccCCceEEEECcccccc-----c-
Confidence 33344556678999999999999999999999999999998642211111111 11235667788886542 1
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.++|+|||+|+...+... ..+....+++|+.|+.+++.++.. .+ .++|+
T Consensus 183 ------~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gT~nLleaa~~----------------------~g-~r~V~ 231 (436)
T PLN02166 183 ------LEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKR----------------------VG-ARFLL 231 (436)
T ss_pred ------cCCCEEEECceeccchhh--ccCHHHHHHHHHHHHHHHHHHHHH----------------------hC-CEEEE
Confidence 258999999987543221 123457789999999998877752 12 48999
Q ss_pred EcCcccccCCCCcccCCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-CCCch
Q psy12836 294 VSSVAHKRGTINKEDLNSE-----NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-SYYDS 367 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~-----~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~~~~~ 367 (429)
+||.+.+ +.....+..+. ....+...|+.||.+.+.+++.+++. .|+.+..+.|+.+-.+..... ...-.
T Consensus 232 ~SS~~VY-g~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~---~~l~~~ilR~~~vYGp~~~~~~~~~i~ 307 (436)
T PLN02166 232 TSTSEVY-GDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRG---AGVEVRIARIFNTYGPRMCLDDGRVVS 307 (436)
T ss_pred ECcHHHh-CCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCCeEEEEEccccCCCCCCCccchHH
Confidence 9987544 32221122222 23344567999999999998887664 478888888887766532110 00001
Q ss_pred hHHHHHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 368 WLSTVVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 368 ~~~~~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+...+.. ++. ..-+...+|+|++++.++..+ ..| .|+++++..
T Consensus 308 ~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~----~~g-iyNIgs~~~ 360 (436)
T PLN02166 308 NFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGE----HVG-PFNLGNPGE 360 (436)
T ss_pred HHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcC----CCc-eEEeCCCCc
Confidence 11111111 111 122467899999999888532 134 566665543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=127.47 Aligned_cols=201 Identities=14% Similarity=0.101 Sum_probs=133.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|.||++++++|+++|++|++++|+.++..... . ..+.++.+|++|++++.++++ .+|
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~----~----~~v~~v~~Dl~d~~~l~~al~-------g~d 66 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK----E----WGAELVYGDLSLPETLPPSFK-------GVT 66 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh----h----cCCEEEECCCCCHHHHHHHHC-------CCC
Confidence 6999999999999999999999999999999875532211 1 146788999999998877664 479
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++||+++... .+.....++|+.++.++.+++. +.+..++|++||.....
T Consensus 67 ~Vi~~~~~~~-------~~~~~~~~~~~~~~~~l~~aa~----------------------~~gvkr~I~~Ss~~~~~-- 115 (317)
T CHL00194 67 AIIDASTSRP-------SDLYNAKQIDWDGKLALIEAAK----------------------AAKIKRFIFFSILNAEQ-- 115 (317)
T ss_pred EEEECCCCCC-------CCccchhhhhHHHHHHHHHHHH----------------------HcCCCEEEEeccccccc--
Confidence 9999876432 1123356678888777776664 33456999999854321
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH-hHH-----
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL-KPL----- 377 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~-~~~----- 377 (429)
.+...|..+|...+.+.+ ..|+.+..+.|+.+-.++..... ...+. .+.
T Consensus 116 ------------~~~~~~~~~K~~~e~~l~-------~~~l~~tilRp~~~~~~~~~~~~------~~~~~~~~~~~~~~ 170 (317)
T CHL00194 116 ------------YPYIPLMKLKSDIEQKLK-------KSGIPYTIFRLAGFFQGLISQYA------IPILEKQPIWITNE 170 (317)
T ss_pred ------------cCCChHHHHHHHHHHHHH-------HcCCCeEEEeecHHhhhhhhhhh------hhhccCCceEecCC
Confidence 123468889988765543 25788999999854322211110 00000 000
Q ss_pred -hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 378 -VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 378 -~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...-+.+.+|+|++++.++..+. ..|+.|++.|+...+
T Consensus 171 ~~~~~~i~v~Dva~~~~~~l~~~~---~~~~~~ni~g~~~~s 209 (317)
T CHL00194 171 STPISYIDTQDAAKFCLKSLSLPE---TKNKTFPLVGPKSWN 209 (317)
T ss_pred CCccCccCHHHHHHHHHHHhcCcc---ccCcEEEecCCCccC
Confidence 00123567999999999986553 247888887775443
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=120.79 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=101.1
Q ss_pred EEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHH---HHHHHHHhhh-----c---CCceEEEEEeeCCCH------HH
Q psy12836 147 VTGANTGIGKAIARELAKRKA--KVIMACRDLDKC---EKARKEVVLE-----S---KNKYVLCRKCDLASQ------ES 207 (429)
Q Consensus 147 ITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~---~~~~~~l~~~-----~---~~~~v~~~~~Dls~~------~s 207 (429)
||||||.||..+.++|++++. +|+++.|..+.. +...+.+... . ...++.++..|++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999986 999999976432 2222222111 0 135899999999984 34
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
.+.+.+ .+|++||||+...... .++...++|+.|+.++++.+. ..+
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~~~~-----~~~~~~~~NV~gt~~ll~la~----------------------~~~ 126 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVNFNA-----PYSELRAVNVDGTRNLLRLAA----------------------QGK 126 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-SBS------S--EEHHHHHHHHHHHHHHHT----------------------SSS
T ss_pred hhcccc-------ccceeeecchhhhhcc-----cchhhhhhHHHHHHHHHHHHH----------------------hcc
Confidence 444444 3699999999764322 345578899999998888775 233
Q ss_pred CcEEEEEcCcccccCCCCc---------ccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccC
Q psy12836 288 PSRIINVSSVAHKRGTINK---------EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~---------~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T 356 (429)
..+++++|| +...+.... ..............|..||...+.+.+..+.+ .|+.+..+.||.|-.
T Consensus 127 ~~~~~~iST-a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~---~g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 127 RKRFHYIST-AYVAGSRPGTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQR---HGLPVTIYRPGIIVG 200 (249)
T ss_dssp ---EEEEEE-GGGTTS-TTT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHH---H---EEEEEE-EEE-
T ss_pred CcceEEecc-ccccCCCCCcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhc---CCceEEEEecCcccc
Confidence 349999999 333222110 01111122344568999999999999888765 479999999998865
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=124.51 Aligned_cols=211 Identities=19% Similarity=0.179 Sum_probs=128.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++|||||+|-||.++++.|.++|++|+.+.|+ .+|++|.+++.+++++. ++|
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~-----~pd 53 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAF-----KPD 53 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH-------S
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHh-----CCC
Confidence 68999999999999999999999999998776 57999999999999887 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+||+..+ +..+.+.+..+.+|+.++..+.+.+.. .+.++|++||..-+.|.
T Consensus 54 ~Vin~aa~~~~--~~ce~~p~~a~~iN~~~~~~la~~~~~-----------------------~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 54 VVINCAAYTNV--DACEKNPEEAYAINVDATKNLAEACKE-----------------------RGARLIHISTDYVFDGD 108 (286)
T ss_dssp EEEE------H--HHHHHSHHHHHHHHTHHHHHHHHHHHH-----------------------CT-EEEEEEEGGGS-SS
T ss_pred eEeccceeecH--HhhhhChhhhHHHhhHHHHHHHHHHHH-----------------------cCCcEEEeeccEEEcCC
Confidence 99999998632 123345667899999999888888752 34699999997655443
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh-----
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV----- 378 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----- 378 (429)
...+..++....+...||.+|+..+...+... + +...+.+|++-.+-..+ ...++.+.+...-.
T Consensus 109 -~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~~----~---~~~IlR~~~~~g~~~~~---~~~~~~~~~~~~~~i~~~~ 177 (286)
T PF04321_consen 109 -KGGPYTEDDPPNPLNVYGRSKLEGEQAVRAAC----P---NALILRTSWVYGPSGRN---FLRWLLRRLRQGEPIKLFD 177 (286)
T ss_dssp -TSSSB-TTS----SSHHHHHHHHHHHHHHHH-----S---SEEEEEE-SEESSSSSS---HHHHHHHHHHCTSEEEEES
T ss_pred -cccccccCCCCCCCCHHHHHHHHHHHHHHHhc----C---CEEEEecceecccCCCc---hhhhHHHHHhcCCeeEeeC
Confidence 22234455556778899999999888776632 1 46667777776551111 11222222211000
Q ss_pred --hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 379 --WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 379 --~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..-....+|+|+.++.++.......-.+..+..+|....+
T Consensus 178 d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S 219 (286)
T PF04321_consen 178 DQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVS 219 (286)
T ss_dssp SCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EE
T ss_pred CceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccC
Confidence 1123468999999999995542111123445555554433
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-12 Score=134.23 Aligned_cols=229 Identities=18% Similarity=0.136 Sum_probs=140.0
Q ss_pred EEEEEcCCCcHHHHHHHHHH--HcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHH--HHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELA--KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESI--RAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La--~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv--~~~~~~i~~~~ 219 (429)
+++||||+|.||++++++|+ ++|++|++++|+... ... ..+.......++.++.+|+++.+.. ....+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~-~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l---- 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRL-EALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL---- 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHH-HHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----
Confidence 69999999999999999999 589999999996532 111 1121111223688889999985310 1112222
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
.++|++||+||...... ..+...++|+.++.++++.+. +.+..++|++||.+.
T Consensus 76 ~~~D~Vih~Aa~~~~~~-----~~~~~~~~nv~gt~~ll~~a~----------------------~~~~~~~v~~SS~~v 128 (657)
T PRK07201 76 GDIDHVVHLAAIYDLTA-----DEEAQRAANVDGTRNVVELAE----------------------RLQAATFHHVSSIAV 128 (657)
T ss_pred cCCCEEEECceeecCCC-----CHHHHHHHHhHHHHHHHHHHH----------------------hcCCCeEEEEecccc
Confidence 46899999999754221 234566889999888877654 334579999999765
Q ss_pred ccCCCCcccCCCC---CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-C-CCchh-HHHHH
Q psy12836 300 KRGTINKEDLNSE---NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-S-YYDSW-LSTVV 373 (429)
Q Consensus 300 ~~~~~~~~~l~~~---~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~-~~~~~-~~~~~ 373 (429)
...... ...+. ........|+.||.+.+.+.+. ..|+.+..+.|+.|-.+-.... . ..... +...+
T Consensus 129 ~g~~~~--~~~e~~~~~~~~~~~~Y~~sK~~~E~~~~~------~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~ 200 (657)
T PRK07201 129 AGDYEG--VFREDDFDEGQGLPTPYHRTKFEAEKLVRE------ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVL 200 (657)
T ss_pred ccCccC--ccccccchhhcCCCCchHHHHHHHHHHHHH------cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHH
Confidence 432111 11111 0112345799999999987753 2579999999998865421110 0 00011 11111
Q ss_pred Hh--HH----h-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LK--PL----V-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~--~~----~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.. .. + ...+...+++|++++.++..+ ...|+.|++.++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~---~~~g~~~ni~~~~~ 253 (657)
T PRK07201 201 AKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKD---GRDGQTFHLTDPKP 253 (657)
T ss_pred HHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCc---CCCCCEEEeCCCCC
Confidence 00 00 0 011345899999999998543 34688888776543
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=130.37 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=143.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcChhH---HHHHHHHH---------hhhcC-------CceEEE
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA---KVIMACRDLDK---CEKARKEV---------VLESK-------NKYVLC 197 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~---~Vil~~R~~~~---~~~~~~~l---------~~~~~-------~~~v~~ 197 (429)
++||+|+||||+|.||..++++|++.+. +|+++.|.... .+....++ +...+ ..++.+
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 5789999999999999999999998653 68888886531 11111111 11111 147889
Q ss_pred EEeeCCC-------HHHHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhc
Q psy12836 198 RKCDLAS-------QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLS 270 (429)
Q Consensus 198 ~~~Dls~-------~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~ 270 (429)
+..|+++ .+.++.+++ .+|+|||+|+..... +..+..+++|+.|+.++++++...
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~-----~~~~~~~~~Nv~gt~~ll~~a~~~------ 150 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD-----ERYDVALGINTLGALNVLNFAKKC------ 150 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc-----CCHHHHHHHHHHHHHHHHHHHHhc------
Confidence 9999984 333444443 479999999976521 345678899999999988877521
Q ss_pred cccccchhhhhhcccCCCcEEEEEcCcccccCCC---CcccCCCCC----------------------------------
Q psy12836 271 RYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI---NKEDLNSEN---------------------------------- 313 (429)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~---~~~~l~~~~---------------------------------- 313 (429)
....++|++||........ ...+.+...
T Consensus 151 ---------------~~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T PLN02996 151 ---------------VKVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEI 215 (491)
T ss_pred ---------------CCCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 1335899999876543211 010111000
Q ss_pred -------------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH--HHHH----H
Q psy12836 314 -------------SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL--STVV----L 374 (429)
Q Consensus 314 -------------~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~--~~~~----~ 374 (429)
.......|+.||++.+.+++..+ .|+.+..+.|+.|-.+.....+..-..+ ...+ .
T Consensus 216 ~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~~~-----~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~ 290 (491)
T PLN02996 216 TQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFK-----ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYG 290 (491)
T ss_pred HHHhhhhchhHHHhCCCCCchHhhHHHHHHHHHHhc-----CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhc
Confidence 01123469999999999886543 3799999999988776533221000000 0011 1
Q ss_pred hHHh---------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 375 KPLV---------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 375 ~~~~---------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.... ..-+..++++|++++.++..+....-.|..++++.+
T Consensus 291 ~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~ 339 (491)
T PLN02996 291 KGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSS 339 (491)
T ss_pred cceEeEEecCCCeecceecccHHHHHHHHHHHHhhccCCCCcEEEecCC
Confidence 1111 112356799999999888542111124667777655
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=111.71 Aligned_cols=182 Identities=20% Similarity=0.185 Sum_probs=123.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
|+|+||+|.+|+.++++|+++|++|++++|++++.++ ..++..+++|+.|++++.++++ +.|+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~-------~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALK-------GADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHT-------TSSE
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhh-------hcch
Confidence 6899999999999999999999999999999987765 2378899999999988888776 5699
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
+|+++|.... + ...++.++..++ +.+..++|++||........
T Consensus 64 vi~~~~~~~~-------~------------~~~~~~~~~a~~------------------~~~~~~~v~~s~~~~~~~~~ 106 (183)
T PF13460_consen 64 VIHAAGPPPK-------D------------VDAAKNIIEAAK------------------KAGVKRVVYLSSAGVYRDPP 106 (183)
T ss_dssp EEECCHSTTT-------H------------HHHHHHHHHHHH------------------HTTSSEEEEEEETTGTTTCT
T ss_pred hhhhhhhhcc-------c------------cccccccccccc------------------ccccccceeeeccccCCCCC
Confidence 9999976432 1 333455555555 34567999999877554321
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCC
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKS 384 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
..... ...+....|...|...+.+. ...+++...++||.+..+....... ... .........+
T Consensus 107 ~~~~~---~~~~~~~~~~~~~~~~e~~~-------~~~~~~~~ivrp~~~~~~~~~~~~~----~~~---~~~~~~~~i~ 169 (183)
T PF13460_consen 107 GLFSD---EDKPIFPEYARDKREAEEAL-------RESGLNWTIVRPGWIYGNPSRSYRL----IKE---GGPQGVNFIS 169 (183)
T ss_dssp SEEEG---GTCGGGHHHHHHHHHHHHHH-------HHSTSEEEEEEESEEEBTTSSSEEE----ESS---TSTTSHCEEE
T ss_pred ccccc---ccccchhhhHHHHHHHHHHH-------HhcCCCEEEEECcEeEeCCCcceeE----Eec---cCCCCcCcCC
Confidence 11000 00112246777776654333 1248999999999886664321110 000 0011124568
Q ss_pred HHHHHHHHHHHhc
Q psy12836 385 PRQGAQTIVYASL 397 (429)
Q Consensus 385 peevA~~iv~l~~ 397 (429)
.+|+|++++.++.
T Consensus 170 ~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 170 REDVAKAIVEALE 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
... |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-11 Score=112.40 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=133.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
+||||++|-+|.++++.|. .+.+|+.++|.. +|++|.+.+.+++.+. ++|+
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~-----~PDv 53 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRET-----RPDV 53 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhh-----CCCE
Confidence 8999999999999999999 778999887643 7999999999999987 8999
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
|||+|++.... ..+.+.+..+.+|..|+.++.+++.. -+.++|++|+-.-+-|.-
T Consensus 54 VIn~AAyt~vD--~aE~~~e~A~~vNa~~~~~lA~aa~~-----------------------~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 54 VINAAAYTAVD--KAESEPELAFAVNATGAENLARAAAE-----------------------VGARLVHISTDYVFDGEK 108 (281)
T ss_pred EEECccccccc--cccCCHHHHHHhHHHHHHHHHHHHHH-----------------------hCCeEEEeecceEecCCC
Confidence 99999987533 23445678899999999999988852 457899999977655532
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-------H
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP-------L 377 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~-------~ 377 (429)
..+..+.....|...||.||.+-+..++.... +...+..+++-.....++. ..+.+..... -
T Consensus 109 -~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~~-------~~~I~Rtswv~g~~g~nFv---~tml~la~~~~~l~vv~D 177 (281)
T COG1091 109 -GGPYKETDTPNPLNVYGRSKLAGEEAVRAAGP-------RHLILRTSWVYGEYGNNFV---KTMLRLAKEGKELKVVDD 177 (281)
T ss_pred -CCCCCCCCCCCChhhhhHHHHHHHHHHHHhCC-------CEEEEEeeeeecCCCCCHH---HHHHHHhhcCCceEEECC
Confidence 23455556667888999999999988776642 2233333333333222211 1111111110 0
Q ss_pred hhhccCCHHHHHHHHHHHhcC
Q psy12836 378 VWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~ 398 (429)
..+.....+++|+++..++..
T Consensus 178 q~gsPt~~~dlA~~i~~ll~~ 198 (281)
T COG1091 178 QYGSPTYTEDLADAILELLEK 198 (281)
T ss_pred eeeCCccHHHHHHHHHHHHhc
Confidence 112345789999999998844
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=114.27 Aligned_cols=186 Identities=17% Similarity=0.110 Sum_probs=131.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++.+++||||+|.+|++++++|.++| .+|.+++..+....--.++. .. ...++.++++|+.+..++.+++.
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-~~-~~~~v~~~~~D~~~~~~i~~a~~---- 75 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-GF-RSGRVTVILGDLLDANSISNAFQ---- 75 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-cc-cCCceeEEecchhhhhhhhhhcc----
Confidence 357899999999999999999999998 78999888664211111111 10 23478899999999988877765
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+. .+||+|+...+. ....+.+..+++|+.|+.++...+. +.+..++|++||.
T Consensus 76 ---~~-~Vvh~aa~~~~~--~~~~~~~~~~~vNV~gT~nvi~~c~----------------------~~~v~~lIYtSs~ 127 (361)
T KOG1430|consen 76 ---GA-VVVHCAASPVPD--FVENDRDLAMRVNVNGTLNVIEACK----------------------ELGVKRLIYTSSA 127 (361)
T ss_pred ---Cc-eEEEeccccCcc--ccccchhhheeecchhHHHHHHHHH----------------------HhCCCEEEEecCc
Confidence 34 667776654433 2223567889999999888887776 4466899999998
Q ss_pred ccccCCCCcccCCCCCCCCC--cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC
Q psy12836 298 AHKRGTINKEDLNSENSYDP--TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~--~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~ 362 (429)
.-.++.....+-++..+++. ...|+.||+-.+.+++..+. ..+....++.|-.|-.|.-+..
T Consensus 128 ~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~---~~~l~T~aLR~~~IYGpgd~~~ 191 (361)
T KOG1430|consen 128 YVVFGGEPIINGDESLPYPLKHIDPYGESKALAEKLVLEANG---SDDLYTCALRPPGIYGPGDKRL 191 (361)
T ss_pred eEEeCCeecccCCCCCCCccccccccchHHHHHHHHHHHhcC---CCCeeEEEEccccccCCCCccc
Confidence 87776433222333334442 35899999998887776654 4568899999998877755443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=112.48 Aligned_cols=206 Identities=19% Similarity=0.131 Sum_probs=116.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
+|||||+|.||.++++.|+++|++|++++|+..+..... ... ..|+.. . ...+....+|+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~--~~~~~~-~-------~~~~~~~~~D~ 60 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----------WEG--YKPWAP-L-------AESEALEGADA 60 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----------cee--eecccc-c-------chhhhcCCCCE
Confidence 689999999999999999999999999999876532210 000 112222 1 11223457899
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
|||+||..........+..+..+++|+.++.++++++... .....++|+.|| .+.++..
T Consensus 61 Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--------------------~~~~~~~i~~S~-~~~yg~~ 119 (292)
T TIGR01777 61 VINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA--------------------EQKPKVFISASA-VGYYGTS 119 (292)
T ss_pred EEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc--------------------CCCceEEEEeee-EEEeCCC
Confidence 9999997543222344556677889999987777766421 111123443443 3333322
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH----hHH---
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL----KPL--- 377 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~----~~~--- 377 (429)
....+.+.....+...|+..|...+...+ .+...++.+..+.|+.+-.+..... ..+...+. .++
T Consensus 120 ~~~~~~E~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~ilR~~~v~G~~~~~~----~~~~~~~~~~~~~~~g~~ 191 (292)
T TIGR01777 120 EDRVFTEEDSPAGDDFLAELCRDWEEAAQ----AAEDLGTRVVLLRTGIVLGPKGGAL----AKMLPPFRLGLGGPLGSG 191 (292)
T ss_pred CCCCcCcccCCCCCChHHHHHHHHHHHhh----hchhcCCceEEEeeeeEECCCcchh----HHHHHHHhcCcccccCCC
Confidence 21222232212233344444444433322 2334579999999998866531100 00100000 000
Q ss_pred -hhhccCCHHHHHHHHHHHhcCC
Q psy12836 378 -VWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 378 -~~~~~~~peevA~~iv~l~~~~ 399 (429)
.+.-+...+|+|++++.++..+
T Consensus 192 ~~~~~~i~v~Dva~~i~~~l~~~ 214 (292)
T TIGR01777 192 RQWFSWIHIEDLVQLILFALENA 214 (292)
T ss_pred CcccccEeHHHHHHHHHHHhcCc
Confidence 1123467999999999999654
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=126.35 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=122.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|+.... . ...+.++.+|++|.+++.++++ ++|
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~~~l~~al~-------~vD 63 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDATAVESAMT-------GAD 63 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCHHHHHHHHh-------CCC
Confidence 599999999999999999999999999999975321 1 0146778999999999887775 479
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++||+|+...+ .+++|+.++.++++++ . +.+.++||++||..
T Consensus 64 ~VVHlAa~~~~-----------~~~vNv~GT~nLLeAa----~------------------~~gvkr~V~iSS~~----- 105 (854)
T PRK05865 64 VVAHCAWVRGR-----------NDHINIDGTANVLKAM----A------------------ETGTGRIVFTSSGH----- 105 (854)
T ss_pred EEEECCCcccc-----------hHHHHHHHHHHHHHHH----H------------------HcCCCeEEEECCcH-----
Confidence 99999986431 3578999987766554 3 33457999999832
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-Hhh---
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP-LVW--- 379 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~-~~~--- 379 (429)
|.+.+.+.+ ..|+.+..+.|+.+-.+.... +.......+ .+.
T Consensus 106 ---------------------K~aaE~ll~-------~~gl~~vILRp~~VYGP~~~~------~i~~ll~~~v~~~G~~ 151 (854)
T PRK05865 106 ---------------------QPRVEQMLA-------DCGLEWVAVRCALIFGRNVDN------WVQRLFALPVLPAGYA 151 (854)
T ss_pred ---------------------HHHHHHHHH-------HcCCCEEEEEeceEeCCChHH------HHHHHhcCceeccCCC
Confidence 766665443 247999999999887653211 111111000 010
Q ss_pred ---hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 380 ---LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 380 ---~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.-+...+|+|++++.++..+. ..|..|++.++.
T Consensus 152 ~~~~dfIhVdDVA~Ai~~aL~~~~---~~ggvyNIgsg~ 187 (854)
T PRK05865 152 DRVVQVVHSDDAQRLLVRALLDTV---IDSGPVNLAAPG 187 (854)
T ss_pred CceEeeeeHHHHHHHHHHHHhCCC---cCCCeEEEECCC
Confidence 124678999999999885432 124455665544
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=126.77 Aligned_cols=237 Identities=19% Similarity=0.169 Sum_probs=142.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC----CEEEEEEcChhHHHHHHHHHhhh---c------CCceEEEEEeeCCCHHH-
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK----AKVIMACRDLDKCEKARKEVVLE---S------KNKYVLCRKCDLASQES- 207 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G----~~Vil~~R~~~~~~~~~~~l~~~---~------~~~~v~~~~~Dls~~~s- 207 (429)
.++|+||||+|.||.+++++|+++| ++|+...|+....... +.+... . ...++.++.+|++++.-
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 5899999999999999999999987 7899999975443221 222110 0 01268889999985420
Q ss_pred -HHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 208 -IRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 208 -v~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
-....+++. ..+|++||||+..... . .++.....|+.|+.++++.+. +.
T Consensus 1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~~--~---~~~~~~~~nv~gt~~ll~~a~----------------------~~ 1099 (1389)
T TIGR03443 1050 LSDEKWSDLT---NEVDVIIHNGALVHWV--Y---PYSKLRDANVIGTINVLNLCA----------------------EG 1099 (1389)
T ss_pred cCHHHHHHHH---hcCCEEEECCcEecCc--c---CHHHHHHhHHHHHHHHHHHHH----------------------hC
Confidence 011122221 3689999999976421 1 233345679999888887764 22
Q ss_pred CCcEEEEEcCcccccCCC-----------CcccCCCCC-----CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Q psy12836 287 APSRIINVSSVAHKRGTI-----------NKEDLNSEN-----SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVH 350 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~-----------~~~~l~~~~-----~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~ 350 (429)
+..+++++||.+...... ....+.+.. .......|+.||.+.+.+++..+. .|+.+..+.
T Consensus 1100 ~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~----~g~~~~i~R 1175 (1389)
T TIGR03443 1100 KAKQFSFVSSTSALDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK----RGLRGCIVR 1175 (1389)
T ss_pred CCceEEEEeCeeecCcccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh----CCCCEEEEC
Confidence 345899999976542210 000111111 112335699999999988876543 489999999
Q ss_pred CCCccCCcccCCCCCchhHHHHHHhH-----Hh----hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 351 PGIVNTDILRHSSYYDSWLSTVVLKP-----LV----WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 351 PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
||.|..+...........+...+... .+ ..-+...+++|++++.++..+.. ...+..+++.++
T Consensus 1176 pg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~-~~~~~i~~~~~~ 1247 (1389)
T TIGR03443 1176 PGYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPK-ESELAVAHVTGH 1247 (1389)
T ss_pred CCccccCCCcCCCCchhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCcc-cCCCCEEEeCCC
Confidence 99986653322222122222211111 11 11245689999999999865421 123445555443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=106.58 Aligned_cols=177 Identities=24% Similarity=0.286 Sum_probs=118.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChh---HHHHHHHHHh-----hhcCCceEEEEEeeCCC------HHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLD---KCEKARKEVV-----LESKNKYVLCRKCDLAS------QES 207 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~---~~~~~~~~l~-----~~~~~~~v~~~~~Dls~------~~s 207 (429)
+++++|||||.||+.+.++|+.+- ++|+...|-.+ ..++..+.+. .+....++..+..|++. ...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 579999999999999999998764 68988888543 1222222222 12234589999999983 344
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
.+++++ .+|.+||||+..... ....+....|+.|+..+++.+. ..+
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~v-----~pYs~L~~~NVlGT~evlrLa~----------------------~gk 126 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNHV-----FPYSELRGANVLGTAEVLRLAA----------------------TGK 126 (382)
T ss_pred HHHHhh-------hcceEEecchhhccc-----CcHHHhcCcchHhHHHHHHHHh----------------------cCC
Confidence 555544 469999999976522 2245567889999988888775 334
Q ss_pred CcEEEEEcCcccccCCCC---cccCC---C--CCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 288 PSRIINVSSVAHKRGTIN---KEDLN---S--ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~---~~~l~---~--~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
...+.+|||++....... ..+.. + ...-.....|+.||.+.+.+++... ..|+++..+.||+|-.+
T Consensus 127 ~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~----~rGLpv~I~Rpg~I~gd 200 (382)
T COG3320 127 PKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAG----DRGLPVTIFRPGYITGD 200 (382)
T ss_pred CceeEEEeeeeeccccccCCCccccccccccccccCccCCCcchhHHHHHHHHHHHh----hcCCCeEEEecCeeecc
Confidence 455999999876443211 01111 0 0112345679999999887766554 45999999999999544
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=111.79 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=92.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+++|||||+|.||.+++++|+++|++|+... .|+++.+.+...++.. +
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--------------------------~~~~~~~~v~~~l~~~-----~ 57 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--------------------------GRLENRASLEADIDAV-----K 57 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec--------------------------CccCCHHHHHHHHHhc-----C
Confidence 36799999999999999999999999987431 2345555555555432 6
Q ss_pred eeEEEEccccCCCCC-CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 222 INVLINNAGVSGCRK-MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 222 iD~lI~nAG~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
+|+|||+||...... ....++....+++|+.++.++++++.. .+. +.+++||.+.+
T Consensus 58 ~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~----------------------~gv-~~v~~sS~~vy 114 (298)
T PLN02778 58 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRE----------------------RGL-VLTNYATGCIF 114 (298)
T ss_pred CCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHH----------------------hCC-CEEEEecceEe
Confidence 899999999865321 122345567899999999999988753 122 34555554322
Q ss_pred cC-C--C-C-cccCCCCCC-CCCcchhHHHHHHHHHHHHHHH
Q psy12836 301 RG-T--I-N-KEDLNSENS-YDPTQAYNQSKLANVLFTRELA 336 (429)
Q Consensus 301 ~~-~--~-~-~~~l~~~~~-~~~~~~Y~aSKaal~~l~~~la 336 (429)
.. . + . ...+.++.. .++...|+.||.+.+.+++.++
T Consensus 115 ~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~ 156 (298)
T PLN02778 115 EYDDAHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYE 156 (298)
T ss_pred CCCCCCCcccCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhh
Confidence 11 1 0 0 011233222 2334689999999999988765
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-11 Score=109.08 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=137.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhh--hcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL--ESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~--~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+|++||||-+|-=|..+|+.|+++|+.|..+.|.........-.+.. ...+.++..+.+|++|..++.++++++
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--- 77 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--- 77 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence 369999999999999999999999999999998864433221101111 112346889999999999999999988
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|-+.|-|+..... .+.+..+.+.+++.+|+.+++.++.-. ..+..|+...|| +
T Consensus 78 --~PdEIYNLaAQS~V~--vSFe~P~~T~~~~~iGtlrlLEaiR~~--------------------~~~~~rfYQASt-S 132 (345)
T COG1089 78 --QPDEIYNLAAQSHVG--VSFEQPEYTADVDAIGTLRLLEAIRIL--------------------GEKKTRFYQAST-S 132 (345)
T ss_pred --Cchhheecccccccc--ccccCcceeeeechhHHHHHHHHHHHh--------------------CCcccEEEeccc-H
Confidence 789999998876533 455667788999999999988776421 212356555554 6
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc---CCCeEEEEEeCC
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE---GTGITVNAVHPG 352 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~---~~gIrVn~V~PG 352 (429)
-.+|.....+..+..+|.|.++|+++|....-++...+..+. -.||-.|-=+|.
T Consensus 133 E~fG~v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~ 189 (345)
T COG1089 133 ELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPL 189 (345)
T ss_pred HhhcCcccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCC
Confidence 677776777777888999999999999999888888887764 356666655553
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=104.28 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=139.6
Q ss_pred CCEEEEEcC-CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGA-NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGa-ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.++|+|.|. +.-|++.+|..|-++|+-|++++.+.+..+...++ . ...+.....|..++.++...+.++.+...
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e----~-~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESE----D-RPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhc----c-CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 468999995 79999999999999999999999998765544333 2 23577777888777777777777665443
Q ss_pred --------------CeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 221 --------------KINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 221 --------------~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
++..||....... +.+.++.+.|.+.++.|++-++..++.++|+++..
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~--------------- 142 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSR--------------- 142 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 3455555444332 22577889999999999999999999999999832
Q ss_pred ccCCCcEEE-EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 284 QESAPSRII-NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 284 ~~~~~g~IV-~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
...+.+|| +..|+.+.... +..++-+....++.+|++.|++|+.+.||.|..++-|.++-.
T Consensus 143 -~~~~~~iil~~Psi~ssl~~------------PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~i~ 204 (299)
T PF08643_consen 143 -SNQKSKIILFNPSISSSLNP------------PFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLDIG 204 (299)
T ss_pred -cCCCceEEEEeCchhhccCC------------CccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeeccc
Confidence 11344554 45566555543 567788899999999999999999999999999999987654
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-09 Score=93.46 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=72.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+ |+|.++++.|+++|++|++++|+.++.+.....+.. ..++.++++|++|.++++++++++.+.++++|
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id 77 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGPFD 77 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence 68999998 788889999999999999999998877665554422 23678889999999999999999999999999
Q ss_pred EEEEccccC
Q psy12836 224 VLINNAGVS 232 (429)
Q Consensus 224 ~lI~nAG~~ 232 (429)
++|+.+-..
T Consensus 78 ~lv~~vh~~ 86 (177)
T PRK08309 78 LAVAWIHSS 86 (177)
T ss_pred EEEEecccc
Confidence 999876543
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-09 Score=104.42 Aligned_cols=208 Identities=15% Similarity=0.195 Sum_probs=123.7
Q ss_pred CCCCEEEEE----cCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH-------HHHhhhcCCceEEEEEeeCCCHHHH
Q psy12836 140 ARGKIVIVT----GANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR-------KEVVLESKNKYVLCRKCDLASQESI 208 (429)
Q Consensus 140 l~gK~vLIT----GassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~-------~~l~~~~~~~~v~~~~~Dls~~~sv 208 (429)
...++|+|| ||+|.||.+++++|+++|++|++++|+........ .++. ...+.++.+|+.| +
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d---~ 122 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS----SAGVKTVWGDPAD---V 122 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh----hcCceEEEecHHH---H
Confidence 445789999 99999999999999999999999999875432211 1111 1136778888866 3
Q ss_pred HHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 209 RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 209 ~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
.+++. ...+|+||+++|.. ..+ ++.++..++ +.+.
T Consensus 123 ~~~~~-----~~~~d~Vi~~~~~~------------------~~~----~~~ll~aa~------------------~~gv 157 (378)
T PLN00016 123 KSKVA-----GAGFDVVYDNNGKD------------------LDE----VEPVADWAK------------------SPGL 157 (378)
T ss_pred Hhhhc-----cCCccEEEeCCCCC------------------HHH----HHHHHHHHH------------------HcCC
Confidence 33321 23689999987631 111 222333333 3355
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
.++|++||...+ +.....+..+.....+ +. +|...+.+.+ ..++.+..+.|+.+-.+..... ...+
T Consensus 158 kr~V~~SS~~vy-g~~~~~p~~E~~~~~p---~~-sK~~~E~~l~-------~~~l~~~ilRp~~vyG~~~~~~--~~~~ 223 (378)
T PLN00016 158 KQFLFCSSAGVY-KKSDEPPHVEGDAVKP---KA-GHLEVEAYLQ-------KLGVNWTSFRPQYIYGPGNNKD--CEEW 223 (378)
T ss_pred CEEEEEccHhhc-CCCCCCCCCCCCcCCC---cc-hHHHHHHHHH-------HcCCCeEEEeceeEECCCCCCc--hHHH
Confidence 699999997543 3211111112211111 22 7887776543 2479999999998877643221 1122
Q ss_pred HHHHHHh--HHhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLK--PLVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~--~~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+...+.. +++. .-+...+|+|++++.++..+. ..|+.|++.++..
T Consensus 224 ~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~---~~~~~yni~~~~~ 277 (378)
T PLN00016 224 FFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPK---AAGQIFNIVSDRA 277 (378)
T ss_pred HHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCcc---ccCCEEEecCCCc
Confidence 2222221 1111 124568999999999986652 2467777776543
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-09 Score=110.84 Aligned_cols=237 Identities=15% Similarity=0.161 Sum_probs=142.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcChhH---HHHHHHHH---------hhhcC-------CceEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA---KVIMACRDLDK---CEKARKEV---------VLESK-------NKYVL 196 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~---~Vil~~R~~~~---~~~~~~~l---------~~~~~-------~~~v~ 196 (429)
-++||+|+||||+|.||..++++|++.+. +|+++.|.... .+...+++ ++..+ ..++.
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 35799999999999999999999998753 68888886432 12221121 12111 24788
Q ss_pred EEEeeCCCHH------HHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhc
Q psy12836 197 CRKCDLASQE------SIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLS 270 (429)
Q Consensus 197 ~~~~Dls~~~------sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~ 270 (429)
++..|++++. ..+.+.+ .+|+|||+|+.... .+..+..+++|+.|+.++++.+...
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f-----~~~~~~a~~vNV~GT~nLLelA~~~------ 257 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF-----DERYDVAIDINTRGPCHLMSFAKKC------ 257 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc-----ccCHHHHHHHHHHHHHHHHHHHHHc------
Confidence 9999999872 3333322 48999999997642 1346778899999999988877521
Q ss_pred cccccchhhhhhcccCCCcEEEEEcCcccccC---CCCcccCCC----------------------------------C-
Q psy12836 271 RYSLCNLIWYYVFQESAPSRIINVSSVAHKRG---TINKEDLNS----------------------------------E- 312 (429)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~---~~~~~~l~~----------------------------------~- 312 (429)
....++|++||...... .+.+..++. .
T Consensus 258 ---------------~~lk~fV~vSTayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 322 (605)
T PLN02503 258 ---------------KKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRH 322 (605)
T ss_pred ---------------CCCCeEEEccCceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhc
Confidence 12357888888543321 111111110 0
Q ss_pred -------------------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------Cc
Q psy12836 313 -------------------NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------YD 366 (429)
Q Consensus 313 -------------------~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------~~ 366 (429)
..++....|..+|+..+.+++..+ .++.+..+.|+.|.+......+- ..
T Consensus 323 ~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lAE~lV~~~~-----~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~ 397 (605)
T PLN02503 323 GFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGEMVINSMR-----GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMD 397 (605)
T ss_pred ccchHHHHHHhhhcccchhhhCCCCChHHHHHHHHHHHHHHhc-----CCCCEEEEcCCEecccccCCccccccCccccc
Confidence 012223579999998888876432 36999999999986644332211 00
Q ss_pred hhHHHHHHhHH-h--------hhccCCHHHHHHHHHHHhcC-CCcccCCceEEecCcc
Q psy12836 367 SWLSTVVLKPL-V--------WLFIKSPRQGAQTIVYASLD-PSLENVSGKYFACYDR 414 (429)
Q Consensus 367 ~~~~~~~~~~~-~--------~~~~~~peevA~~iv~l~~~-~~~~~vtG~~i~~~gg 414 (429)
+.... ....+ . ..-...++.++++++.++.. .......|.+++++.+
T Consensus 398 p~~~~-~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~ 454 (605)
T PLN02503 398 PIVLY-YGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASS 454 (605)
T ss_pred hhhhh-eeccceeEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCC
Confidence 11100 00000 0 01124678899998888422 1111235778777644
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=115.07 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
..+++|||||+|.||+++++.|.++|++|... ..|++|.+.++.++++.
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~----- 427 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNV----- 427 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhh-----
Confidence 34579999999999999999999999887311 13677888887777654
Q ss_pred CeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 221 KINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+|||+|+..... .+..+++.+..+++|+.++.++++++.. .+ .+.+++||...
T Consensus 428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~----------------------~g-~~~v~~Ss~~v 484 (668)
T PLN02260 428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRE----------------------NG-LLMMNFATGCI 484 (668)
T ss_pred CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHH----------------------cC-CeEEEEcccce
Confidence 689999999986532 2233455678899999999999988852 12 35666666443
Q ss_pred ccCC---C-C-cccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeC
Q psy12836 300 KRGT---I-N-KEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHP 351 (429)
Q Consensus 300 ~~~~---~-~-~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~P 351 (429)
+.+. + . ..++.++... ++...|+.||.+.+.+++.++. ..++|+..+..
T Consensus 485 ~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~---~~~~r~~~~~~ 539 (668)
T PLN02260 485 FEYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDN---VCTLRVRMPIS 539 (668)
T ss_pred ecCCcccccccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhh---heEEEEEEecc
Confidence 2211 0 0 1123333222 3347899999999998877642 24566666553
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=102.96 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=116.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC-e
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK-I 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~-i 222 (429)
+++||||+|.||++++++|+++|++|.++.|+.++... ..+..+.+|+.|.+++..+++.. +.... +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG-----------PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC-----------CCCccccccCCCHHHHHHHHhcc-cCcCCce
Confidence 38999999999999999999999999999999875321 13445678999999999988653 22344 8
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|.++++++... +..+ ..+.++..++ +.+-.+||++||.....+
T Consensus 69 d~v~~~~~~~~-------~~~~------------~~~~~i~aa~------------------~~gv~~~V~~Ss~~~~~~ 111 (285)
T TIGR03649 69 SAVYLVAPPIP-------DLAP------------PMIKFIDFAR------------------SKGVRRFVLLSASIIEKG 111 (285)
T ss_pred eEEEEeCCCCC-------ChhH------------HHHHHHHHHH------------------HcCCCEEEEeeccccCCC
Confidence 99999876421 1011 1123334443 345679999998543221
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH--HHHhH--Hh
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST--VVLKP--LV 378 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~--~~~~~--~~ 378 (429)
. ..+...+.+.+ + ..|+....+.|+++..++...... ..... .+... -.
T Consensus 112 ~-------------------~~~~~~~~~l~----~--~~gi~~tilRp~~f~~~~~~~~~~--~~~~~~~~~~~~~g~~ 164 (285)
T TIGR03649 112 G-------------------PAMGQVHAHLD----S--LGGVEYTVLRPTWFMENFSEEFHV--EAIRKENKIYSATGDG 164 (285)
T ss_pred C-------------------chHHHHHHHHH----h--ccCCCEEEEeccHHhhhhcccccc--cccccCCeEEecCCCC
Confidence 1 01211221111 1 148999999999776544221100 00000 00000 01
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..-+.+++|+|++++.++.++.. .|..+...|+..
T Consensus 165 ~~~~v~~~Dva~~~~~~l~~~~~---~~~~~~l~g~~~ 199 (285)
T TIGR03649 165 KIPFVSADDIARVAYRALTDKVA---PNTDYVVLGPEL 199 (285)
T ss_pred ccCcccHHHHHHHHHHHhcCCCc---CCCeEEeeCCcc
Confidence 12367899999999999876532 244445555443
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=108.91 Aligned_cols=156 Identities=16% Similarity=0.078 Sum_probs=108.9
Q ss_pred EEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeEEE
Q psy12836 147 VTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLI 226 (429)
Q Consensus 147 ITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~lI 226 (429)
|+||++|+|.++++.|...|++|+.+.+...+... ....++..+.+|.+..++
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~------------------- 95 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA--------GWGDRFGALVFDATGITD------------------- 95 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccccc--------CcCCcccEEEEECCCCCC-------------------
Confidence 88889999999999999999999987665431100 000112222233333222
Q ss_pred EccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCc
Q psy12836 227 NNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306 (429)
Q Consensus 227 ~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~ 306 (429)
.+++. +.+.+++..++.|. ..|+||+++|..+..+
T Consensus 96 -------------~~~l~--------~~~~~~~~~l~~l~--------------------~~griv~i~s~~~~~~---- 130 (450)
T PRK08261 96 -------------PADLK--------ALYEFFHPVLRSLA--------------------PCGRVVVLGRPPEAAA---- 130 (450)
T ss_pred -------------HHHHH--------HHHHHHHHHHHhcc--------------------CCCEEEEEccccccCC----
Confidence 22221 23344555565553 4589999999765422
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHH
Q psy12836 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPR 386 (429)
Q Consensus 307 ~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 386 (429)
...|+++|+++.+++++++.|+ +.||++|+|.|+. ..++
T Consensus 131 -----------~~~~~~akaal~gl~rsla~E~-~~gi~v~~i~~~~-----------------------------~~~~ 169 (450)
T PRK08261 131 -----------DPAAAAAQRALEGFTRSLGKEL-RRGATAQLVYVAP-----------------------------GAEA 169 (450)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEecCC-----------------------------CCHH
Confidence 3469999999999999999999 7899999998874 2578
Q ss_pred HHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 387 QGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 387 evA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+++.++.|+++.. ..+++|+.+..+++..
T Consensus 170 ~~~~~~~~l~s~~-~a~~~g~~i~~~~~~~ 198 (450)
T PRK08261 170 GLESTLRFFLSPR-SAYVSGQVVRVGAADA 198 (450)
T ss_pred HHHHHHHHhcCCc-cCCccCcEEEecCCcc
Confidence 8888899998654 6789999999888754
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-08 Score=82.97 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=138.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC-
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK- 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g- 220 (429)
-.+|+|-||-+.+|.+++..|-.+++-|.-++-.+.... + .-..+..|-+=.++-+...+++-+..+
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-----------d-~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-----------D-SSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-----------c-ceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 457899999999999999999999998887765442110 1 112333444444566667777766543
Q ss_pred -CeeEEEEccccCCCCCCCCHH---HHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 221 -KINVLINNAGVSGCRKMLTEE---KIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 221 -~iD~lI~nAG~~~~~~~~~~~---~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|.++|-||........+.+ .-+.++.-.+...-...+.+..+++ .+|-+-..+.
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK--------------------~GGLL~LtGA 130 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLK--------------------PGGLLQLTGA 130 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccC--------------------CCceeeeccc
Confidence 899999999976544322221 2233444444444334444444443 3455555555
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
-++..+. |++..|+.+|+|+++++++|+.+-. +.|-.+.+|-|=..+|||.+.+-+... +
T Consensus 131 kaAl~gT------------PgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~AD-----f- 192 (236)
T KOG4022|consen 131 KAALGGT------------PGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPNAD-----F- 192 (236)
T ss_pred ccccCCC------------CcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCCCc-----c-
Confidence 5555554 7788999999999999999998754 467789999999999999988742111 1
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEe
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~ 410 (429)
.-+...+.+++..+.-..+. .+--+|..+.
T Consensus 193 -----ssWTPL~fi~e~flkWtt~~-~RPssGsLlq 222 (236)
T KOG4022|consen 193 -----SSWTPLSFISEHFLKWTTET-SRPSSGSLLQ 222 (236)
T ss_pred -----cCcccHHHHHHHHHHHhccC-CCCCCCceEE
Confidence 12345677888877776554 3445776654
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=99.81 Aligned_cols=216 Identities=16% Similarity=0.154 Sum_probs=124.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
++||||+|-||++++..|.+.|++|+++.|+..+.+.... ..+ ...+.+....+ ..+|+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~--------~~v-------~~~~~~~~~~~------~~~Da 59 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH--------PNV-------TLWEGLADALT------LGIDA 59 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC--------ccc-------cccchhhhccc------CCCCE
Confidence 5899999999999999999999999999999876543211 011 11111211111 16899
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
|||-||..-.....+.+.-+..++ +-+..++.+...+.+ ...+.++..-+|..|+++..
T Consensus 60 vINLAG~~I~~rrWt~~~K~~i~~----SRi~~T~~L~e~I~~-----------------~~~~P~~~isaSAvGyYG~~ 118 (297)
T COG1090 60 VINLAGEPIAERRWTEKQKEEIRQ----SRINTTEKLVELIAA-----------------SETKPKVLISASAVGYYGHS 118 (297)
T ss_pred EEECCCCccccccCCHHHHHHHHH----HHhHHHHHHHHHHHh-----------------ccCCCcEEEecceEEEecCC
Confidence 999999764444445554444443 455566777766653 23445566667778888765
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHH---HhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH----H
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAK---RLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP----L 377 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~---el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~----~ 377 (429)
....+.++..+ + ..+ +..+++.+-. .....|+||..+.-|.|-++-........+.+.-.+..+ -
T Consensus 119 ~~~~~tE~~~~-g-~~F------la~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGr 190 (297)
T COG1090 119 GDRVVTEESPP-G-DDF------LAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGR 190 (297)
T ss_pred CceeeecCCCC-C-CCh------HHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhhccCCccCCCC
Confidence 44444443221 1 111 1223333322 233469999999999887653222211111110001011 1
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.|.-+...||..++|+|++.++. +.|-+ +...+
T Consensus 191 Q~~SWIhieD~v~~I~fll~~~~---lsGp~-N~taP 223 (297)
T COG1090 191 QWFSWIHIEDLVNAILFLLENEQ---LSGPF-NLTAP 223 (297)
T ss_pred ceeeeeeHHHHHHHHHHHHhCcC---CCCcc-cccCC
Confidence 12235789999999999997653 45654 44333
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=98.30 Aligned_cols=233 Identities=15% Similarity=0.079 Sum_probs=150.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR--KAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|.++||||.|.||...+..++.. .++.+..+.-. -......+++ ....+..+++.|+.+...+..++..
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~---~n~p~ykfv~~di~~~~~~~~~~~~----- 78 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPV---RNSPNYKFVEGDIADADLVLYLFET----- 78 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhh---ccCCCceEeeccccchHHHHhhhcc-----
Confidence 89999999999999999999976 34544443210 0001122222 2234678899999999888777653
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
..+|.|+|-|+...... +.-+--...+.|++++..|+....-. ..-.++|++|+..-
T Consensus 79 ~~id~vihfaa~t~vd~--s~~~~~~~~~nnil~t~~Lle~~~~s---------------------g~i~~fvhvSTdeV 135 (331)
T KOG0747|consen 79 EEIDTVIHFAAQTHVDR--SFGDSFEFTKNNILSTHVLLEAVRVS---------------------GNIRRFVHVSTDEV 135 (331)
T ss_pred CchhhhhhhHhhhhhhh--hcCchHHHhcCCchhhhhHHHHHHhc---------------------cCeeEEEEecccce
Confidence 38999999998764321 11222345688999988888777532 23468999999765
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh----
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK---- 375 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~---- 375 (429)
+........-.+.....|..+|++||+|.+++.+++.+. .|+.|..+.-+.|-.|..-... +...+..
T Consensus 136 YGds~~~~~~~E~s~~nPtnpyAasKaAaE~~v~Sy~~s---y~lpvv~~R~nnVYGP~q~~~k-----lipkFi~l~~~ 207 (331)
T KOG0747|consen 136 YGDSDEDAVVGEASLLNPTNPYAASKAAAEMLVRSYGRS---YGLPVVTTRMNNVYGPNQYPEK-----LIPKFIKLAMR 207 (331)
T ss_pred ecCccccccccccccCCCCCchHHHHHHHHHHHHHHhhc---cCCcEEEEeccCccCCCcChHH-----HhHHHHHHHHh
Confidence 543321111113334567789999999999999999986 4688888888888777432221 1111111
Q ss_pred --HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 --PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 --~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+.+ ..-....+|+++++-..+... -.|++++.-.-....
T Consensus 208 ~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg----~~geIYNIgtd~e~~ 255 (331)
T KOG0747|consen 208 GKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEKG----ELGEIYNIGTDDEMR 255 (331)
T ss_pred CCCcceecCcccceeeEeHHHHHHHHHHHHhcC----CccceeeccCcchhh
Confidence 111 122356899999998888442 258888775544443
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=102.03 Aligned_cols=100 Identities=16% Similarity=0.228 Sum_probs=75.2
Q ss_pred CEEEEEcC-CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGA-NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGa-ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+=.||.. +||||+++|++|+++|++|+++++... +... . ...+|+++.++++++++++.+.+++
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~~-~-----~~~~Dv~d~~s~~~l~~~v~~~~g~ 80 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKPE-P-----HPNLSIREIETTKDLLITLKELVQE 80 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cccc-c-----CCcceeecHHHHHHHHHHHHHHcCC
Confidence 34566665 578999999999999999999876311 1100 0 1358999999999999999999999
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHH
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTM 259 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~ 259 (429)
+|++|||||+... ....+.++|+++ +..+.|++++
T Consensus 81 iDiLVnnAgv~d~~~~~~~s~e~~~~~---~~~~~~~~~~ 117 (227)
T TIGR02114 81 HDILIHSMAVSDYTPVYMTDLEQVQAS---DNLNEFLSKQ 117 (227)
T ss_pred CCEEEECCEeccccchhhCCHHHHhhh---cchhhhhccc
Confidence 9999999997543 356678888876 4445565554
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-10 Score=71.70 Aligned_cols=30 Identities=27% Similarity=0.136 Sum_probs=28.7
Q ss_pred ccccchhhccCC-ceEEEEeceeeeeeceecccc
Q psy12836 21 LRSALWELSSGA-GRVKYYDCMTYVYLSFQSGTI 53 (429)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 53 (429)
||+||++..+++ |++||+|+.|+ .|||++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~---~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETG---ESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTT---EEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCC---CEEeCCC
Confidence 899999999877 99999999999 9999998
|
This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A .... |
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=93.94 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=120.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
....++++++||||+|.||.++|++|..+|+.|++++.-...-...... ......+..+.-|+..+ ++..
T Consensus 22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~---~~~~~~fel~~hdv~~p-----l~~e-- 91 (350)
T KOG1429|consen 22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEH---WIGHPNFELIRHDVVEP-----LLKE-- 91 (350)
T ss_pred ccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcch---hccCcceeEEEeechhH-----HHHH--
Confidence 4456789999999999999999999999999999988644332222221 12223455555566544 4443
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|.++|-|...++..-. ...-+++..|+.++.+.+.++.. -+.|++..|+
T Consensus 92 -----vD~IyhLAapasp~~y~--~npvktIktN~igtln~lglakr-----------------------v~aR~l~aST 141 (350)
T KOG1429|consen 92 -----VDQIYHLAAPASPPHYK--YNPVKTIKTNVIGTLNMLGLAKR-----------------------VGARFLLAST 141 (350)
T ss_pred -----hhhhhhhccCCCCcccc--cCccceeeecchhhHHHHHHHHH-----------------------hCceEEEeec
Confidence 48889999887665211 22356789999999998877742 3467777766
Q ss_pred cccccCCCCcccCCC-----CCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 297 VAHKRGTINKEDLNS-----ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~-----~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
+..+|.+...+..+ .++..+.+.|...|.+.+.|+.+..++ .||.|....+-.+-.|.
T Consensus 142 -seVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~---~giE~rIaRifNtyGPr 204 (350)
T KOG1429|consen 142 -SEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQ---EGIEVRIARIFNTYGPR 204 (350)
T ss_pred -ccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhhcc---cCcEEEEEeeecccCCc
Confidence 44555543333222 334567889999999999888877765 67877766665554443
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-08 Score=102.56 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=115.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|.||++++++|+++|++|++++|+.... ....+.++.+|+++.. +.+++ .++|
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~al-------~~~D 62 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQELA-------GEAD 62 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHHh-------cCCC
Confidence 599999999999999999999999999999865321 0124678899999873 33332 2579
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++||+|+.... + ...+|+.++.++++++. +.+ .++|++||..+ .
T Consensus 63 ~VIHLAa~~~~------~----~~~vNv~Gt~nLleAA~----------------------~~G-vRiV~~SS~~G---~ 106 (699)
T PRK12320 63 AVIHLAPVDTS------A----PGGVGITGLAHVANAAA----------------------RAG-ARLLFVSQAAG---R 106 (699)
T ss_pred EEEEcCccCcc------c----hhhHHHHHHHHHHHHHH----------------------HcC-CeEEEEECCCC---C
Confidence 99999986421 0 12478888888877764 223 48999998642 1
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhc--
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF-- 381 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (429)
. ..|.. ++.+... .++.+..+.|+.+-.+...... ......+........
T Consensus 107 ~--------------~~~~~--------aE~ll~~---~~~p~~ILR~~nVYGp~~~~~~---~r~I~~~l~~~~~~~pI 158 (699)
T PRK12320 107 P--------------ELYRQ--------AETLVST---GWAPSLVIRIAPPVGRQLDWMV---CRTVATLLRSKVSARPI 158 (699)
T ss_pred C--------------ccccH--------HHHHHHh---cCCCEEEEeCceecCCCCcccH---hHHHHHHHHHHHcCCce
Confidence 0 01221 2222222 3477888888877666322110 011111111111111
Q ss_pred -cCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 382 -IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 382 -~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+|++++++.++..+ .+| .|++.++...
T Consensus 159 ~vIyVdDvv~alv~al~~~----~~G-iyNIG~~~~~ 190 (699)
T PRK12320 159 RVLHLDDLVRFLVLALNTD----RNG-VVDLATPDTT 190 (699)
T ss_pred EEEEHHHHHHHHHHHHhCC----CCC-EEEEeCCCee
Confidence 237899999999988543 145 7788776544
|
|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-09 Score=67.61 Aligned_cols=31 Identities=26% Similarity=0.147 Sum_probs=30.1
Q ss_pred ccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 21 LRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
||+||++..+.+|++||+|+.|+ .|||++|+
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~---~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETK---ETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCC---CEEcCCCC
Confidence 79999999999999999999999 99999997
|
Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=87.26 Aligned_cols=229 Identities=17% Similarity=0.154 Sum_probs=139.1
Q ss_pred CCCCCCCCCEEEEEcCC-CcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhh--hcCCceEEEEEeeCCCHHHHHH
Q psy12836 135 TEETSARGKIVIVTGAN-TGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVL--ESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 135 ~~~~~l~gK~vLITGas-sGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~--~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
++.....+|++|||||+ +.||.+++..|+..|++||++..+. +.-.+..+.+=. ..++..+.++..++.+..+|+.
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA 468 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA 468 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence 45778899999999999 6799999999999999999986543 333344444422 2345678888999999999999
Q ss_pred HHHHHHHhCC--------------CeeEEEEccccCCCCCCCCHHHH--HhhhcchhHHHHHHHHHHHHHHHhhhccccc
Q psy12836 211 FAEEVKKENK--------------KINVLINNAGVSGCRKMLTEEKI--ELQLGVNHMGHFLLTMLLLDKLQANLSRYSL 274 (429)
Q Consensus 211 ~~~~i~~~~g--------------~iD~lI~nAG~~~~~~~~~~~~~--~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~ 274 (429)
+++-|-.... .+|.++--|+....+ ++...+- +..+.+-+.....++-.+.+ ...+..+
T Consensus 469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G-~l~~agsraE~~~rilLw~V~Rliggl~~----~~s~r~v 543 (866)
T COG4982 469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSG-ELADAGSRAEFAMRILLWNVLRLIGGLKK----QGSSRGV 543 (866)
T ss_pred HHHHhccccccccCCcceecccccCcceeeecccCCccC-ccccCCchHHHHHHHHHHHHHHHHHHhhh----hccccCc
Confidence 9998854321 367788877765433 2222222 22233333333333322221 1111000
Q ss_pred cchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--cCCCeEEEEEeCC
Q psy12836 275 CNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPG 352 (429)
Q Consensus 275 ~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el--~~~gIrVn~V~PG 352 (429)
. ..-+||.-.|.. .| .|.+..+|+-||++++.+..-+..|- +. -+.+.--.-|
T Consensus 544 ----------~-~R~hVVLPgSPN--rG-----------~FGgDGaYgEsK~aldav~~RW~sEs~Wa~-~vsl~~A~IG 598 (866)
T COG4982 544 ----------D-TRLHVVLPGSPN--RG-----------MFGGDGAYGESKLALDAVVNRWHSESSWAA-RVSLAHALIG 598 (866)
T ss_pred ----------c-cceEEEecCCCC--CC-----------ccCCCcchhhHHHHHHHHHHHhhccchhhH-HHHHhhhhee
Confidence 0 113555555532 22 24678899999999998877665553 22 2444445567
Q ss_pred Ccc-CCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 353 IVN-TDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 353 ~v~-T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
+++ |.++..... +.+...+. --+.-+++|+|..++-|++..
T Consensus 599 WtrGTGLMg~Ndi----iv~aiEk~--GV~tyS~~EmA~~LLgL~sae 640 (866)
T COG4982 599 WTRGTGLMGHNDI----IVAAIEKA--GVRTYSTDEMAFNLLGLASAE 640 (866)
T ss_pred eeccccccCCcch----hHHHHHHh--CceecCHHHHHHHHHhhccHH
Confidence 775 665544331 22212111 124568999999999988553
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-08 Score=97.24 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcC---------------CCc-HHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGA---------------NTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGa---------------ssG-IG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.+++||++||||| |+| +|+++|++|+++|++|++++++.+ +. . + .. ...+|
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~--~-~~--~~~~d 250 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T--P-AG--VKRID 250 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C--C-CC--cEEEc
Confidence 4689999999999 555 999999999999999999998752 11 0 1 11 24679
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+++.+++.+.+. +.++++|++|+|||+..
T Consensus 251 v~~~~~~~~~v~---~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 251 VESAQEMLDAVL---AALPQADIFIMAAAVAD 279 (399)
T ss_pred cCCHHHHHHHHH---HhcCCCCEEEEcccccc
Confidence 999888777765 45789999999999864
|
|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-08 Score=64.02 Aligned_cols=31 Identities=26% Similarity=0.119 Sum_probs=29.4
Q ss_pred cccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 22 RSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
|+||++..+.+|++||+|+.|+ .|||+||+.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~---~s~W~~P~~ 31 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTK---ETQWEDPRE 31 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCC---CEeCCCCCC
Confidence 7899999999999999999999 999999973
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=90.39 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.++++|+++|+|| ||+|++++..|++.|++ |++++|+. +++++..+++..... .+....+|+++.+++++.++
T Consensus 122 ~~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~--~~~~~~~d~~~~~~~~~~~~ 198 (289)
T PRK12548 122 VDVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP--ECIVNVYDLNDTEKLKAEIA 198 (289)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC--CceeEEechhhhhHHHhhhc
Confidence 4578999999999 69999999999999996 99999997 677777766644332 34455788888777665444
Q ss_pred HHHHhCCCeeEEEEccccC
Q psy12836 214 EVKKENKKINVLINNAGVS 232 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~ 232 (429)
..|+||||-.+.
T Consensus 199 -------~~DilINaTp~G 210 (289)
T PRK12548 199 -------SSDILVNATLVG 210 (289)
T ss_pred -------cCCEEEEeCCCC
Confidence 349999987543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-07 Score=86.10 Aligned_cols=202 Identities=18% Similarity=0.167 Sum_probs=116.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
|+|+||+|.+|+.+++.|++.|++|.++.|+..+. ..++++.. .+..+.+|+.|.+++.++++ ++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~--~~~~l~~~----g~~vv~~d~~~~~~l~~al~-------g~d~ 67 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD--RAQQLQAL----GAEVVEADYDDPESLVAALK-------GVDA 67 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH--HHHHHHHT----TTEEEES-TT-HHHHHHHHT-------TCSE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh--hhhhhhcc----cceEeecccCCHHHHHHHHc-------CCce
Confidence 68999999999999999999999999999998432 23333332 23456999999999888876 5799
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
++++-+...+ .+.+ ....++.++. +.+-.++|+ ||.......
T Consensus 68 v~~~~~~~~~------~~~~--------~~~~li~Aa~----------------------~agVk~~v~-ss~~~~~~~- 109 (233)
T PF05368_consen 68 VFSVTPPSHP------SELE--------QQKNLIDAAK----------------------AAGVKHFVP-SSFGADYDE- 109 (233)
T ss_dssp EEEESSCSCC------CHHH--------HHHHHHHHHH----------------------HHT-SEEEE-SEESSGTTT-
T ss_pred EEeecCcchh------hhhh--------hhhhHHHhhh----------------------ccccceEEE-EEecccccc-
Confidence 9988776531 1111 1122233333 223567774 543332211
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---Cch-h-HHHHHHhHHh-
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDS-W-LSTVVLKPLV- 378 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~-~-~~~~~~~~~~- 378 (429)
.....+....-..|..++.+.+.. |+....|.||+........... ... . ... +..+..
T Consensus 110 -------~~~~~p~~~~~~~k~~ie~~l~~~-------~i~~t~i~~g~f~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 174 (233)
T PF05368_consen 110 -------SSGSEPEIPHFDQKAEIEEYLRES-------GIPYTIIRPGFFMENLLPPFAPVVDIKKSKDVVT-LPGPGNQ 174 (233)
T ss_dssp -------TTTSTTHHHHHHHHHHHHHHHHHC-------TSEBEEEEE-EEHHHHHTTTHHTTCSCCTSSEEE-EETTSTS
T ss_pred -------cccccccchhhhhhhhhhhhhhhc-------cccceeccccchhhhhhhhhcccccccccceEEE-EccCCCc
Confidence 000112233445677766544433 7999999999764333221110 000 0 000 000100
Q ss_pred hhcc-CCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 379 WLFI-KSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 379 ~~~~-~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.... .+++|+|+.+..++.+|. .+-.|.++...+
T Consensus 175 ~~~~~~~~~Dvg~~va~il~~p~-~~~~~~~~~~~~ 209 (233)
T PF05368_consen 175 KAVPVTDTRDVGRAVAAILLDPE-KHNNGKTIFLAG 209 (233)
T ss_dssp EEEEEEHHHHHHHHHHHHHHSGG-GTTEEEEEEEGG
T ss_pred cccccccHHHHHHHHHHHHcChH-HhcCCEEEEeCC
Confidence 0123 388999999999998873 333678777755
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.7e-07 Score=80.82 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++++++|+||+|++|+++++.|+++|++|++++|+.+++++..+++....+ .....+|..+.+++.++++
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--- 96 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFG---EGVGAVETSDDAARAAAIK--- 96 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcC---CcEEEeeCCCHHHHHHHHh---
Confidence 4578899999999999999999999999999999999999988888777653322 2344678888888777664
Q ss_pred HhCCCeeEEEEcccc
Q psy12836 217 KENKKINVLINNAGV 231 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~ 231 (429)
+.|++|++...
T Consensus 97 ----~~diVi~at~~ 107 (194)
T cd01078 97 ----GADVVFAAGAA 107 (194)
T ss_pred ----cCCEEEECCCC
Confidence 34888886543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.4e-07 Score=82.77 Aligned_cols=214 Identities=24% Similarity=0.197 Sum_probs=137.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+.+|-++-|.||+|.+|+-++.+|++.|.+|++-.|-.+.-- ..++..+.-.++.++..|+.|+++|+++++.-
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s- 131 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS- 131 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheeecccccceeeeccCCCCHHHHHHHHHhC-
Confidence 34678999999999999999999999999999999988654321 12222233357999999999999999999854
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.++||..|--......+ .-++|+.++-.+.+.+. +.+--++|.+|+
T Consensus 132 ------NVVINLIGrd~eTknf~------f~Dvn~~~aerlArick----------------------e~GVerfIhvS~ 177 (391)
T KOG2865|consen 132 ------NVVINLIGRDYETKNFS------FEDVNVHIAERLARICK----------------------EAGVERFIHVSC 177 (391)
T ss_pred ------cEEEEeeccccccCCcc------cccccchHHHHHHHHHH----------------------hhChhheeehhh
Confidence 89999988643322222 23577777766666554 334568999998
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
..+.. ...+-|-.||++-+--++ .++.. ...|.|.-|-...-+-... ...+.+. ...
T Consensus 178 Lganv--------------~s~Sr~LrsK~~gE~aVr---dafPe----AtIirPa~iyG~eDrfln~-ya~~~rk-~~~ 234 (391)
T KOG2865|consen 178 LGANV--------------KSPSRMLRSKAAGEEAVR---DAFPE----ATIIRPADIYGTEDRFLNY-YASFWRK-FGF 234 (391)
T ss_pred ccccc--------------cChHHHHHhhhhhHHHHH---hhCCc----ceeechhhhcccchhHHHH-HHHHHHh-cCc
Confidence 76442 235568888887764433 33332 4557777553322111110 0001111 112
Q ss_pred Hhhhc--------cCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 377 LVWLF--------IKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 377 ~~~~~--------~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
+|+.. ..-+-|+|++|+.++.||.+ .|.++..-|+
T Consensus 235 ~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s---~Gktye~vGP 277 (391)
T KOG2865|consen 235 LPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS---MGKTYEFVGP 277 (391)
T ss_pred eeeecCCcceeeccEEEehHHHHHHHhccCccc---cCceeeecCC
Confidence 22111 12357999999999999854 5877766554
|
|
| >KOG1891|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-07 Score=83.18 Aligned_cols=59 Identities=10% Similarity=-0.129 Sum_probs=49.1
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeecCCCCcc---------eEEEEEee---ec
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLTGPSSFN---------LVAFIVHV---TI 82 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~---------~~~~~~~~---~~ 82 (429)
..+|=+|||||--.-|-.||-||+|||++ +|.|.||-... -||+| .++|.+|. ++
T Consensus 88 ~sedlPLPpgWav~~T~~grkYYIDHn~~---tTHW~HPlerE----------gLppGW~rv~s~e~GtyY~~~~~k~tQ 154 (271)
T KOG1891|consen 88 CSEDLPLPPGWAVEFTTEGRKYYIDHNNR---TTHWVHPLERE----------GLPPGWKRVFSPEKGTYYYHEEMKRTQ 154 (271)
T ss_pred CcccCCCCCCcceeeEecCceeEeecCCC---cccccChhhhc----------cCCcchhhccccccceeeeecccchhh
Confidence 35566899999999999999999999999 99999997654 45555 88999888 66
Q ss_pred ccCc
Q psy12836 83 GMDT 86 (429)
Q Consensus 83 ~~dp 86 (429)
|.-|
T Consensus 155 y~HP 158 (271)
T KOG1891|consen 155 YEHP 158 (271)
T ss_pred hcCC
Confidence 6555
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.7e-07 Score=89.09 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcC---------------CCc-HHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGA---------------NTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGa---------------ssG-IG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.+++||+++|||| ||| +|.++|++|+.+|++|+++.++.... .+ .. ...+|
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------~~-~~--~~~~~ 247 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------TP-PG--VKSIK 247 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC----------CC-CC--cEEEE
Confidence 4689999999999 677 99999999999999999988765321 11 11 24679
Q ss_pred CCCHHHH-HHHHHHHHHhCCCeeEEEEccccCCC
Q psy12836 202 LASQESI-RAFAEEVKKENKKINVLINNAGVSGC 234 (429)
Q Consensus 202 ls~~~sv-~~~~~~i~~~~g~iD~lI~nAG~~~~ 234 (429)
+++.+++ ++++++. ++++|++|+|||+...
T Consensus 248 v~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 248 VSTAEEMLEAALNEL---AKDFDIFISAAAVADF 278 (390)
T ss_pred eccHHHHHHHHHHhh---cccCCEEEEccccccc
Confidence 9999888 5555443 4689999999998643
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=79.17 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=64.3
Q ss_pred CEEEEEcCCCc-HHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassG-IG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+-.||+.|+| ||+++|++|+++|++|++++|+.... . .....+.++.++ + .+++.+.+.+.++.
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~-~~~~~v~~i~v~--s---~~~m~~~l~~~~~~ 81 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------P-EPHPNLSIIEIE--N---VDDLLETLEPLVKD 81 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------C-CCCCCeEEEEEe--c---HHHHHHHHHHHhcC
Confidence 36788887776 99999999999999999998764210 0 001134444432 2 23333334444567
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHH
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMG 253 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g 253 (429)
+|++|||||+... ....+.+++..++++|.+.
T Consensus 82 ~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~ 115 (229)
T PRK06732 82 HDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFL 115 (229)
T ss_pred CCEEEeCCccCCceehhhhhhhhhhhhhhhhhhh
Confidence 8999999998652 2345677888888887654
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-06 Score=76.70 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=122.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHh----hhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV----LESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~----~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.|++||||-+|-=|..+|.-|+.+|+.|..+-|.........-+-. ....+......-.|++|...+.+++..+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i-- 105 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI-- 105 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc--
Confidence 3699999999999999999999999999998886655543322211 1112345666778999999999999887
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++-+.|.|+..+... +.+-.+-+-+|...|++.++.++...-. ..+-+ -+-.|.
T Consensus 106 ---kPtEiYnLaAQSHVkv--SFdlpeYTAeVdavGtLRlLdAi~~c~l-------------------~~~Vr-fYQAst 160 (376)
T KOG1372|consen 106 ---KPTEVYNLAAQSHVKV--SFDLPEYTAEVDAVGTLRLLDAIRACRL-------------------TEKVR-FYQAST 160 (376)
T ss_pred ---CchhhhhhhhhcceEE--EeecccceeeccchhhhhHHHHHHhcCc-------------------cccee-EEeccc
Confidence 5677788877655331 2233344567788898887776643321 11223 334555
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHH---hcCCCeEEEEEeCC
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKR---LEGTGITVNAVHPG 352 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~e---l~~~gIrVn~V~PG 352 (429)
+..+|.....+..+..+|.+.++|+++|....=++-..+.. ++-.||-+|-=+|-
T Consensus 161 SElyGkv~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPR 218 (376)
T KOG1372|consen 161 SELYGKVQEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPR 218 (376)
T ss_pred HhhcccccCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCc
Confidence 66677655566667778899999999998754333333333 34457777766663
|
|
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=79.91 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcC---CEEEEEEcChhH---HH--------HHHHHHhhhcCC--ceEEEEEeeCC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDK---CE--------KARKEVVLESKN--KYVLCRKCDLA 203 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G---~~Vil~~R~~~~---~~--------~~~~~l~~~~~~--~~v~~~~~Dls 203 (429)
++||+++||||+|++|+.+.++|++.- -++++.-|.... .+ .+-+.+.+..+. .++..+..|++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 579999999999999999999999753 268888775321 11 122222233222 46788888988
Q ss_pred CHH------HHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 204 SQE------SIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 204 ~~~------sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
+++ +.+.+. ..+|++||+|+... -.|.++....+|..|+.++.+.+.....
T Consensus 90 ~~~LGis~~D~~~l~-------~eV~ivih~AAtvr-----Fde~l~~al~iNt~Gt~~~l~lak~~~~ 146 (467)
T KOG1221|consen 90 EPDLGISESDLRTLA-------DEVNIVIHSAATVR-----FDEPLDVALGINTRGTRNVLQLAKEMVK 146 (467)
T ss_pred CcccCCChHHHHHHH-------hcCCEEEEeeeeec-----cchhhhhhhhhhhHhHHHHHHHHHHhhh
Confidence 654 233222 36799999999764 2355677889999999999998876543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-05 Score=73.32 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=118.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++||||||.+|.+++++|.++|++|.+..|+.++..... ..+.+...|+.++.++...++ ++|
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~-------G~~ 65 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAK-------GVD 65 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhc-------ccc
Confidence 6899999999999999999999999999999998877654 257788999999999888776 457
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
.+++..+... ... ... ...........+.. ..+..+++.+|+..+..
T Consensus 66 ~~~~i~~~~~-~~~-~~~------~~~~~~~~~~a~~a-----------------------~~~~~~~~~~s~~~~~~-- 112 (275)
T COG0702 66 GVLLISGLLD-GSD-AFR------AVQVTAVVRAAEAA-----------------------GAGVKHGVSLSVLGADA-- 112 (275)
T ss_pred EEEEEecccc-ccc-chh------HHHHHHHHHHHHHh-----------------------cCCceEEEEeccCCCCC--
Confidence 8777777654 221 111 11111111112111 11345677777655432
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEe-CCCccCCcccCCCCCchhHHHHH--HhHHh--
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVH-PGIVNTDILRHSSYYDSWLSTVV--LKPLV-- 378 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~-PG~v~T~~~~~~~~~~~~~~~~~--~~~~~-- 378 (429)
.....|..+|...+...++. |+.-..+. ++++......... ...... ....+
T Consensus 113 ------------~~~~~~~~~~~~~e~~l~~s-------g~~~t~lr~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 169 (275)
T COG0702 113 ------------ASPSALARAKAAVEAALRSS-------GIPYTTLRRAAFYLGAGAAFIE----AAEAAGLPVIPRGIG 169 (275)
T ss_pred ------------CCccHHHHHHHHHHHHHHhc-------CCCeEEEecCeeeeccchhHHH----HHHhhCCceecCCCC
Confidence 13567999999887766544 44433343 3333221110000 000000 00011
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.......+|++..+...+..+. ..|..+...|.
T Consensus 170 ~~~~i~~~d~a~~~~~~l~~~~---~~~~~~~l~g~ 202 (275)
T COG0702 170 RLSPIAVDDVAEALAAALDAPA---TAGRTYELAGP 202 (275)
T ss_pred ceeeeEHHHHHHHHHHHhcCCc---ccCcEEEccCC
Confidence 1234678999999998887663 35666666665
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-05 Score=67.78 Aligned_cols=197 Identities=15% Similarity=0.072 Sum_probs=113.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA---KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~---~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|+++|||++|=.|.||.+.+.++|. +.++.+. -.+||++.+++++++++.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s-----------------------kd~DLt~~a~t~~lF~~e---- 54 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS-----------------------KDADLTNLADTRALFESE---- 54 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc-----------------------ccccccchHHHHHHHhcc----
Confidence 6899999999999999999999875 3443321 257999999999999876
Q ss_pred CCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 220 KKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++-++|+.|++.+.. .....+-|..-+++| -++++.+. ..+..++|+..|
T Consensus 55 -kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~in----dNVlhsa~----------------------e~gv~K~vsclS 107 (315)
T KOG1431|consen 55 -KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIN----DNVLHSAH----------------------EHGVKKVVSCLS 107 (315)
T ss_pred -CCceeeehHhhhcchhhcCCCchHHHhhcceec----hhHHHHHH----------------------Hhchhhhhhhcc
Confidence 678899998865432 112333333333222 22233332 122334555444
Q ss_pred cccccCCCCcccCCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCccc---CCCCCchh
Q psy12836 297 VAHKRGTINKEDLNSE-----NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR---HSSYYDSW 368 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~-----~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~---~~~~~~~~ 368 (429)
.+ +++.....++++. ...+..-.|+-+|..+.-..++.+.+++ -...++-|-.+-.|--. ......+.
T Consensus 108 tC-IfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg---~~~tsviPtNvfGphDNfnpe~sHVlPa 183 (315)
T KOG1431|consen 108 TC-IFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHG---RDYTSVIPTNVFGPHDNFNPENSHVLPA 183 (315)
T ss_pred ee-ecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhC---CceeeeccccccCCCCCCCcccccchHH
Confidence 33 3333222333321 1224455799999877777788888754 44445555444332110 00111122
Q ss_pred HHHHHHh--------------HHhhhccCCHHHHHHHHHHHhc
Q psy12836 369 LSTVVLK--------------PLVWLFIKSPRQGAQTIVYASL 397 (429)
Q Consensus 369 ~~~~~~~--------------~~~~~~~~~peevA~~iv~l~~ 397 (429)
+..++-. ..|++.+....|.|++++|++.
T Consensus 184 li~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr 226 (315)
T KOG1431|consen 184 LIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLR 226 (315)
T ss_pred HHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHH
Confidence 2222211 1344456677899999999984
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=86.82 Aligned_cols=165 Identities=18% Similarity=0.151 Sum_probs=125.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhh-hcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVL-ESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
-.|..+|+||-||.|+++|.-|.++|++ +++++|+.-+..-.+..++. ...+.++.+-..|++..+..+.++++. .+
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s-~k 1845 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEES-NK 1845 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHh-hh
Confidence 4689999999999999999999999995 88999987554333333322 223446666677888888888888876 45
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.+.+..++|-|.+.... +..+++.|++.-+-.+.|+.++-+.-..+- ..-.-+|..||
T Consensus 1846 l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C--------------------~~LdyFv~FSS 1905 (2376)
T KOG1202|consen 1846 LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREIC--------------------PELDYFVVFSS 1905 (2376)
T ss_pred cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhC--------------------cccceEEEEEe
Confidence 68899999999987654 677899999999999999888776554321 12357888888
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKR 338 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~e 338 (429)
++.-+|. .++.-|+-+..|++.+++.=+.+
T Consensus 1906 vscGRGN------------~GQtNYG~aNS~MERiceqRr~~ 1935 (2376)
T KOG1202|consen 1906 VSCGRGN------------AGQTNYGLANSAMERICEQRRHE 1935 (2376)
T ss_pred ecccCCC------------CcccccchhhHHHHHHHHHhhhc
Confidence 8877776 56788999999999988765443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=80.60 Aligned_cols=77 Identities=26% Similarity=0.408 Sum_probs=66.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+.+||.|| |+||+.+|..|+++| .+|.+++|+.+++.++.+... .++.++++|+.+.+++.+++++.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~------ 69 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDF------ 69 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcC------
Confidence 57899999 999999999999999 899999999999888766542 27889999999999988888753
Q ss_pred eeEEEEccccC
Q psy12836 222 INVLINNAGVS 232 (429)
Q Consensus 222 iD~lI~nAG~~ 232 (429)
|++||++...
T Consensus 70 -d~VIn~~p~~ 79 (389)
T COG1748 70 -DLVINAAPPF 79 (389)
T ss_pred -CEEEEeCCch
Confidence 9999998754
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.7e-05 Score=74.65 Aligned_cols=176 Identities=23% Similarity=0.225 Sum_probs=107.5
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH-HHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIR-AFAE 213 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~-~~~~ 213 (429)
++....+-.+|+|+||+|++|+-+++.|.++|+.|.++.|+.++.+.... . .........+..|.....++. .+++
T Consensus 72 ~~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-~--~~~d~~~~~v~~~~~~~~d~~~~~~~ 148 (411)
T KOG1203|consen 72 PNNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-V--FFVDLGLQNVEADVVTAIDILKKLVE 148 (411)
T ss_pred CCCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-c--cccccccceeeeccccccchhhhhhh
Confidence 34556778899999999999999999999999999999999887766544 1 111123444455555444332 2332
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+ .....+++.++|.-...+ +...-.+|.+.|..++..++. ..+-.++|+
T Consensus 149 ~~---~~~~~~v~~~~ggrp~~e-----d~~~p~~VD~~g~knlvdA~~----------------------~aGvk~~vl 198 (411)
T KOG1203|consen 149 AV---PKGVVIVIKGAGGRPEEE-----DIVTPEKVDYEGTKNLVDACK----------------------KAGVKRVVL 198 (411)
T ss_pred hc---cccceeEEecccCCCCcc-----cCCCcceecHHHHHHHHHHHH----------------------HhCCceEEE
Confidence 22 113467777776543221 233344677788888888773 335579999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHH-HHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFT-RELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~-~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
+||+.+..... ++...+. .+...-. +....++...|+.-..|.||....+
T Consensus 199 v~si~~~~~~~-----------~~~~~~~---~~~~~~~k~~~e~~~~~Sgl~ytiIR~g~~~~~ 249 (411)
T KOG1203|consen 199 VGSIGGTKFNQ-----------PPNILLL---NGLVLKAKLKAEKFLQDSGLPYTIIRPGGLEQD 249 (411)
T ss_pred EEeecCcccCC-----------Cchhhhh---hhhhhHHHHhHHHHHHhcCCCcEEEeccccccC
Confidence 99877654321 1111121 1111111 1223334467899999999966543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.5e-05 Score=64.84 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||+++|.|| ||.|++++..|++.|++ |.++.|+.+++++..+++ ++..+.++ ++.+.. +..
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~--~~~~~~---~~~----- 73 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF----GGVNIEAI--PLEDLE---EAL----- 73 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH----TGCSEEEE--EGGGHC---HHH-----
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc----Ccccccee--eHHHHH---HHH-----
Confidence 789999999998 99999999999999986 999999999999888877 11233333 343332 222
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
...|++|++.+...
T Consensus 74 --~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 --QEADIVINATPSGM 87 (135)
T ss_dssp --HTESEEEE-SSTTS
T ss_pred --hhCCeEEEecCCCC
Confidence 25699999987654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.1e-05 Score=78.35 Aligned_cols=76 Identities=33% Similarity=0.454 Sum_probs=59.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+|.|| |.+|+.+++.|++++- +|++++|+.+++++..+++ ...++...++|+.|.+++.+++++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~------- 68 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRGC------- 68 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTTS-------
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhcC-------
Confidence 689999 9999999999999874 8999999999988877654 2347899999999999988887643
Q ss_pred eEEEEccccC
Q psy12836 223 NVLINNAGVS 232 (429)
Q Consensus 223 D~lI~nAG~~ 232 (429)
|++||++|..
T Consensus 69 dvVin~~gp~ 78 (386)
T PF03435_consen 69 DVVINCAGPF 78 (386)
T ss_dssp SEEEE-SSGG
T ss_pred CEEEECCccc
Confidence 9999999865
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00076 Score=59.78 Aligned_cols=199 Identities=16% Similarity=0.106 Sum_probs=120.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.+-|.||||-.|..++++..++|+.|..+.||+++.... ..+..++.|+.|++++.+.+. ..|
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~-------g~D 64 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLA-------GHD 64 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhc-------CCc
Confidence 467889999999999999999999999999999886532 146678999999998755543 569
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+||..-|...+.. +.. +....+.+...++ ..+..|++.++...+..-.
T Consensus 65 aVIsA~~~~~~~~----~~~----------~~k~~~~li~~l~------------------~agv~RllVVGGAGSL~id 112 (211)
T COG2910 65 AVISAFGAGASDN----DEL----------HSKSIEALIEALK------------------GAGVPRLLVVGGAGSLEID 112 (211)
T ss_pred eEEEeccCCCCCh----hHH----------HHHHHHHHHHHHh------------------hcCCeeEEEEcCccceEEc
Confidence 9998877653221 110 1111344455554 4467899999876665433
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccC
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIK 383 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
++ ..+-.... -+..-|..+++..+ +.+.|..+ .++...-|+|...-.|. .....+.-.- +.++..-.-.-..
T Consensus 113 ~g-~rLvD~p~-fP~ey~~~A~~~ae-~L~~Lr~~---~~l~WTfvSPaa~f~PG-erTg~yrlgg-D~ll~n~~G~SrI 184 (211)
T COG2910 113 EG-TRLVDTPD-FPAEYKPEALAQAE-FLDSLRAE---KSLDWTFVSPAAFFEPG-ERTGNYRLGG-DQLLVNAKGESRI 184 (211)
T ss_pred CC-ceeecCCC-CchhHHHHHHHHHH-HHHHHhhc---cCcceEEeCcHHhcCCc-cccCceEecc-ceEEEcCCCceee
Confidence 32 11111111 12223444544443 34455554 45888999998766552 2222110000 0011111111245
Q ss_pred CHHHHHHHHHHHhcCC
Q psy12836 384 SPRQGAQTIVYASLDP 399 (429)
Q Consensus 384 ~peevA~~iv~l~~~~ 399 (429)
+.+|-|-+++.-+..|
T Consensus 185 S~aDYAiA~lDe~E~~ 200 (211)
T COG2910 185 SYADYAIAVLDELEKP 200 (211)
T ss_pred eHHHHHHHHHHHHhcc
Confidence 8899999999888666
|
|
| >KOG3209|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.9e-06 Score=84.76 Aligned_cols=69 Identities=10% Similarity=-0.058 Sum_probs=57.2
Q ss_pred eeccccccccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeee----cCCCCcc---------eEEEEEe
Q psy12836 13 ITIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKML----TGPSSFN---------LVAFIVH 79 (429)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lp~~---------~~~~~~~ 79 (429)
.-+|.++.||..||+--|..|.|||+||||| +|.|-+||--+ ..|.. .++||+| .++|++|
T Consensus 215 ~~e~~~gplp~nwemayte~gevyfiDhntk---ttswLdprl~k---kaK~~eeckd~elPygWeki~dpiYg~yyvdH 288 (984)
T KOG3209|consen 215 TQEDNLGPLPHNWEMAYTEQGEVYFIDHNTK---TTSWLDPRLTK---KAKPPEECKDQELPYGWEKIEDPIYGTYYVDH 288 (984)
T ss_pred ccccccCCCCccceEeEeecCeeEeeecccc---cceecChhhhc---ccCChhhcccccccccccccCCccceeEEecc
Confidence 3458888899999999999999999999999 99999999544 23333 4589999 7899999
Q ss_pred e---ecccCcc
Q psy12836 80 V---TIGMDTQ 87 (429)
Q Consensus 80 ~---~~~~dp~ 87 (429)
+ ++|..|-
T Consensus 289 iN~~sq~enpv 299 (984)
T KOG3209|consen 289 INRKSQYENPV 299 (984)
T ss_pred cchhhhhccch
Confidence 9 7887764
|
|
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=72.90 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=71.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHH----cCCEEEEEEcChhHHHHHHHHHhhhcCC--ceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAK----RKAKVIMACRDLDKCEKARKEVVLESKN--KYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~----~G~~Vil~~R~~~~~~~~~~~l~~~~~~--~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
-++|-||||.-|.-+++++.. .|..+.+++||++++++..+++.+..+. .....+.||.+|++++.++++++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~-- 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA-- 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh--
Confidence 489999999999999999999 7889999999999999999988776543 22337889999999999999987
Q ss_pred hCCCeeEEEEccccC
Q psy12836 218 ENKKINVLINNAGVS 232 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~ 232 (429)
.+++||+|..
T Consensus 85 -----~vivN~vGPy 94 (423)
T KOG2733|consen 85 -----RVIVNCVGPY 94 (423)
T ss_pred -----EEEEeccccc
Confidence 7899999965
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=73.05 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCC----------------CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 140 ARGKIVIVTGAN----------------TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 140 l~gK~vLITGas----------------sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
|+||.||||+|. |.||.++|++|+++|++|+++++....... .. .....+..+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~---~~~~~~~~V~s--- 71 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI---NNQLELHPFEG--- 71 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc---CCceeEEEEec---
Confidence 579999999886 999999999999999999998764321100 00 00112233333
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
..++...+.++.+. .++|++||+|++..
T Consensus 72 -~~d~~~~l~~~~~~-~~~D~VIH~AAvsD 99 (229)
T PRK09620 72 -IIDLQDKMKSIITH-EKVDAVIMAAAGSD 99 (229)
T ss_pred -HHHHHHHHHHHhcc-cCCCEEEECccccc
Confidence 22222333333221 25799999999853
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=6e-05 Score=77.81 Aligned_cols=77 Identities=26% Similarity=0.283 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++|+|+++ +|.++|+.|+++|++|++++++. +.+++..+++... .+.++..|..+ +
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~------------~ 64 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPE------------E 64 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcch------------h
Confidence 57899999999887 99999999999999999999975 3444444444321 24466677765 1
Q ss_pred hCCCeeEEEEccccC
Q psy12836 218 ENKKINVLINNAGVS 232 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~ 232 (429)
..+.+|+||+++|+.
T Consensus 65 ~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 65 FLEGVDLVVVSPGVP 79 (450)
T ss_pred HhhcCCEEEECCCCC
Confidence 135689999999974
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.2e-05 Score=73.67 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=56.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHc-C-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKR-K-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~-G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.++++|+++||||+|.||+.+|++|+++ | .+|+++.|+.+++.....++. ..|+. ++.+
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~-----------~~~i~---~l~~----- 211 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG-----------GGKIL---SLEE----- 211 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc-----------cccHH---hHHH-----
Confidence 4789999999999999999999999865 5 589999999888776655431 11222 2222
Q ss_pred HHhCCCeeEEEEccccCC
Q psy12836 216 KKENKKINVLINNAGVSG 233 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~ 233 (429)
.....|++|+.++...
T Consensus 212 --~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 212 --ALPEADIVVWVASMPK 227 (340)
T ss_pred --HHccCCEEEECCcCCc
Confidence 2345799999998754
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00023 Score=68.95 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+++++|.++++.+...|++|++++++.++.+.+. ++ + .. ..+|..+.+..+.+.+.. ..+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~----g-~~---~~~~~~~~~~~~~~~~~~--~~~ 212 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA----G-AD---AVFNYRAEDLADRILAAT--AGQ 212 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc----C-CC---EEEeCCCcCHHHHHHHHc--CCC
Confidence 5799999999999999999999999999999999887765542 22 1 11 124555554444443322 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|.+++++|.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 69999999873
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >KOG3259|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.7e-06 Score=68.56 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=32.8
Q ss_pred ccccccccchhhcc-CCceEEEEeceeeeeeceecccceecC
Q psy12836 17 VEDTLRSALWELSS-GAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
++.-||+|||.|.. ..||+||.||.|+ ..||+-|---.
T Consensus 3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~---~SqWe~P~~t~ 41 (163)
T KOG3259|consen 3 DEEKLPPGWEKRMSRSSGRPYYFNTETN---ESQWERPSGTS 41 (163)
T ss_pred ccccCCchhheeccccCCCcceeccccc---hhhccCCCccc
Confidence 56789999999865 6899999999999 99999996443
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=72.43 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+.|.||||+|.+|..+|..|+.+|. ++++++.+. .+....++..... .. ...++++.++..+.+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~--~~--~i~~~~~~~d~~~~l------- 84 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT--PA--QVRGFLGDDQLGDAL------- 84 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc--Cc--eEEEEeCCCCHHHHc-------
Confidence 46899999999999999999997764 799999977 2211223322111 11 122433333333332
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
...|++|+.||....+. ..+++.+..|+.....+. +.+. +..+..||+++|--.
T Consensus 85 ~~aDiVVitAG~~~~~g----~~R~dll~~N~~i~~~i~----~~i~------------------~~~p~aivivvSNPv 138 (323)
T PLN00106 85 KGADLVIIPAGVPRKPG----MTRDDLFNINAGIVKTLC----EAVA------------------KHCPNALVNIISNPV 138 (323)
T ss_pred CCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHH----HHHH------------------HHCCCeEEEEeCCCc
Confidence 46799999999865321 235566777777644444 4444 223445555555222
Q ss_pred cc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC
Q psy12836 300 KR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG 341 (429)
Q Consensus 300 ~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~ 341 (429)
.. .......+.....+++...|+.++.-...|-..+|.++.-
T Consensus 139 D~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv 181 (323)
T PLN00106 139 NSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGL 181 (323)
T ss_pred cccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhCC
Confidence 10 0000000112234567788999887777888889988764
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00031 Score=61.66 Aligned_cols=161 Identities=17% Similarity=0.092 Sum_probs=101.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+..++++.++|.||+|-.|..+.+++++.+- +|+++.|....-.++ ...+.....|.+..++ .+
T Consensus 13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at---------~k~v~q~~vDf~Kl~~---~a-- 78 (238)
T KOG4039|consen 13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT---------DKVVAQVEVDFSKLSQ---LA-- 78 (238)
T ss_pred HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc---------cceeeeEEechHHHHH---HH--
Confidence 4677899999999999999999999999984 799998864211111 1245555566654433 33
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
..+..+|+++|+-|...... +.+....|..--.+.+.+++ + ..+...++.+
T Consensus 79 --~~~qg~dV~FcaLgTTRgka-----GadgfykvDhDyvl~~A~~A----K------------------e~Gck~fvLv 129 (238)
T KOG4039|consen 79 --TNEQGPDVLFCALGTTRGKA-----GADGFYKVDHDYVLQLAQAA----K------------------EKGCKTFVLV 129 (238)
T ss_pred --hhhcCCceEEEeeccccccc-----ccCceEeechHHHHHHHHHH----H------------------hCCCeEEEEE
Confidence 33457899999988754221 12222333333222333322 1 5567799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCccc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~ 360 (429)
||..+... ..-.|-..|.-++.=...|-- =++..+.||++..+...
T Consensus 130 SS~GAd~s--------------SrFlY~k~KGEvE~~v~eL~F------~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 130 SSAGADPS--------------SRFLYMKMKGEVERDVIELDF------KHIIILRPGPLLGERTE 175 (238)
T ss_pred eccCCCcc--------------cceeeeeccchhhhhhhhccc------cEEEEecCcceeccccc
Confidence 99766432 244588888877755544432 36778999998766543
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00032 Score=64.24 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHc-CC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKR-KA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~-G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
-+-..+||||+-|-+|.++|..|-.+ |. .|++.+--... +.....+ -++-.|+-|...+++++-.
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp-----~~V~~~G-----PyIy~DILD~K~L~eIVVn--- 108 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP-----ANVTDVG-----PYIYLDILDQKSLEEIVVN--- 108 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc-----hhhcccC-----CchhhhhhccccHHHhhcc---
Confidence 34568999999999999999988754 65 46665432111 0111111 2455688888877776542
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.+||-+||-.+..... .+...-...+||..|.-++++.+..+ .-=+|+-|.
T Consensus 109 --~RIdWL~HfSALLSAv---GE~NVpLA~~VNI~GvHNil~vAa~~------------------------kL~iFVPST 159 (366)
T KOG2774|consen 109 --KRIDWLVHFSALLSAV---GETNVPLALQVNIRGVHNILQVAAKH------------------------KLKVFVPST 159 (366)
T ss_pred --cccceeeeHHHHHHHh---cccCCceeeeecchhhhHHHHHHHHc------------------------CeeEeeccc
Confidence 4899999987754322 22334456789999998888877543 223555555
Q ss_pred ccccCCCCc-ccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEE-eCCCcc
Q psy12836 298 AHKRGTINK-EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAV-HPGIVN 355 (429)
Q Consensus 298 ~~~~~~~~~-~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V-~PG~v~ 355 (429)
-|.+|..+. ++.+....-.+...|+.||.-.+.+.+.+...+ |+...++ .||.+.
T Consensus 160 IGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GEy~~hrF---g~dfr~~rfPg~is 216 (366)
T KOG2774|consen 160 IGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGEYFNHRF---GVDFRSMRFPGIIS 216 (366)
T ss_pred ccccCCCCCCCCCCCeeeecCceeechhHHHHHHHHHHHHhhc---CccceecccCcccc
Confidence 555553222 111122223567789999999999888887764 5655555 466554
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00052 Score=59.81 Aligned_cols=77 Identities=25% Similarity=0.331 Sum_probs=56.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++++++|+|+ |++|.++++.|++.| .+|++++|+.++.++..+++.... +..+.++.++.
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------- 78 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-------IAIAYLDLEEL--------- 78 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-------cceeecchhhc---------
Confidence 467899999998 899999999999996 789999999988877766653211 22344443322
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
....|++|++.....
T Consensus 79 -~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 79 -LAEADLIINTTPVGM 93 (155)
T ss_pred -cccCCEEEeCcCCCC
Confidence 246799999987654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00056 Score=67.19 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
-++.+.+.|||++|.||..+|..|+.+| .++++++++. +...+.++..... . ....+.+|..+..+.+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~~--~--~~v~~~td~~~~~~~l---- 74 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDT--P--AKVTGYADGELWEKAL---- 74 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcCc--C--ceEEEecCCCchHHHh----
Confidence 3456789999999999999999999665 5899999932 2222223332221 1 2233555544332222
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
...|++|++||....+. +.+...+..|+.. ++.+.+.|. +.+..++|+++|
T Consensus 75 ---~gaDvVVitaG~~~~~~----~tR~dll~~N~~i----~~~i~~~i~------------------~~~~~~iviv~S 125 (321)
T PTZ00325 75 ---RGADLVLICAGVPRKPG----MTRDDLFNTNAPI----VRDLVAAVA------------------SSAPKAIVGIVS 125 (321)
T ss_pred ---CCCCEEEECCCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHH------------------HHCCCeEEEEec
Confidence 35699999999854321 2345567777766 444455554 335567777777
Q ss_pred ccccc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q psy12836 297 VAHKR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE 340 (429)
Q Consensus 297 ~~~~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~ 340 (429)
-.... .......+.....+++...|+.+-.=-..|-..++..+.
T Consensus 126 NPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~la~~l~ 170 (321)
T PTZ00325 126 NPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALG 170 (321)
T ss_pred CcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHHHHHhC
Confidence 42211 100000111233456777788873222346666777653
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=62.38 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+++++|.++++.+...|++|++++++.++.+.+. .+ .. . ...|..+.+..+.+.+... .+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~---~~--~---~~~~~~~~~~~~~~~~~~~--~~ 234 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-EL---GA--D---YVIDYRKEDFVREVRELTG--KR 234 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc---CC--C---eEEecCChHHHHHHHHHhC--CC
Confidence 5789999999999999999999999999999999887765442 21 11 1 1246666665555544332 23
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++++++|.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 69999999883
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=63.62 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
..++|+++|+|+ ||+|++++..|++.|++|.+++|+.++.++..+++.... .+..... ++. .
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~---~~~~~~~-----~~~---------~ 175 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG---EIQAFSM-----DEL---------P 175 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC---ceEEech-----hhh---------c
Confidence 456899999999 699999999999999999999999998888777764321 1222111 110 1
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
....|++||+.+..
T Consensus 176 ~~~~DivInatp~g 189 (270)
T TIGR00507 176 LHRVDLIINATSAG 189 (270)
T ss_pred ccCccEEEECCCCC
Confidence 23579999998864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00027 Score=72.86 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++|||+++ +|.++|+.|+++|++|++.+++........+++...+ +.+...+ +...+ .+
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g----~~~~~~~--~~~~~---~~----- 66 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEG----IKVICGS--HPLEL---LD----- 66 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcC----CEEEeCC--CCHHH---hc-----
Confidence 46899999999976 9999999999999999999887644433334443321 1121111 11111 11
Q ss_pred CCCeeEEEEccccCC
Q psy12836 219 NKKINVLINNAGVSG 233 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~ 233 (429)
..+|+||+++|+..
T Consensus 67 -~~~d~vV~s~gi~~ 80 (447)
T PRK02472 67 -EDFDLMVKNPGIPY 80 (447)
T ss_pred -CcCCEEEECCCCCC
Confidence 14799999999864
|
|
| >KOG0940|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00012 Score=72.34 Aligned_cols=77 Identities=13% Similarity=-0.005 Sum_probs=59.4
Q ss_pred EEEeeccccccccccchhhccCCc---eEEEEeceeeeeec-eecccceecCccce---eeeecCCC----------Ccc
Q psy12836 10 LVMITIEVEDTLRSALWELSSGAG---RVKYYDCMTYVYLS-FQSGTIVTGGIGTT---LKMLTGPS----------SFN 72 (429)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l----------p~~ 72 (429)
.-.+|.++.++||++|+.+.+.+| ++||.+|.++ . |+|.||++|.-+-| .+.+.+++ .-|
T Consensus 50 ~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~---~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g 126 (358)
T KOG0940|consen 50 FKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRK---DYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG 126 (358)
T ss_pred cccccccccCCCCcceeeeeccccCCcceeeeeeccc---ccccccCCccCCCCCcccccccccccccccceeeEecCCC
Confidence 345677889999999999999999 9999999999 8 99999999942211 11233333 333
Q ss_pred eEEEEEee---ecccCcccc
Q psy12836 73 LVAFIVHV---TIGMDTQLV 89 (429)
Q Consensus 73 ~~~~~~~~---~~~~dp~~~ 89 (429)
..+|.+|+ +++.||+.+
T Consensus 127 ~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 127 QRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ceehhhhhhcCccccCchhh
Confidence 77889999 888888876
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=65.08 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=66.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC-------CEEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK-------AKVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G-------~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.++||||+|.+|.+++..|+..| .+|++++++.. +++....++... ......|+....+.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~-----~~~~~~~~~~~~~~------ 72 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC-----AFPLLKSVVATTDP------ 72 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc-----cccccCCceecCCH------
Confidence 48999999999999999999854 58999999653 122111111100 00001122222222
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+.+...|+||+.||...... .+. .+.++.|+. +.+.+.+.+.+. ..+.+.++++
T Consensus 73 -~~~l~~aDiVI~tAG~~~~~~-~~R---~~l~~~N~~----i~~~i~~~i~~~----------------~~~~~iiivv 127 (325)
T cd01336 73 -EEAFKDVDVAILVGAMPRKEG-MER---KDLLKANVK----IFKEQGEALDKY----------------AKKNVKVLVV 127 (325)
T ss_pred -HHHhCCCCEEEEeCCcCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHh----------------CCCCeEEEEe
Confidence 222346799999999864322 222 334555554 455555555521 1246777777
Q ss_pred cC
Q psy12836 295 SS 296 (429)
Q Consensus 295 SS 296 (429)
|.
T Consensus 128 sN 129 (325)
T cd01336 128 GN 129 (325)
T ss_pred cC
Confidence 75
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0029 Score=62.51 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+|++|..+++.+...|++|+.++++.++.+.+.+.+.. .. ..|..+.++..+.+.+.. .+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa----~~----vi~~~~~~~~~~~i~~~~--~~ 220 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF----DD----AFNYKEEPDLDAALKRYF--PN 220 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----ce----eEEcCCcccHHHHHHHhC--CC
Confidence 589999999999999999988888899999999998876655443311 11 123322223333333332 14
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.+.|.
T Consensus 221 gvd~v~d~~g~ 231 (338)
T cd08295 221 GIDIYFDNVGG 231 (338)
T ss_pred CcEEEEECCCH
Confidence 79999998773
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=59.39 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=48.6
Q ss_pred CCCCEEEEEcC----------------CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 140 ARGKIVIVTGA----------------NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 140 l~gK~vLITGa----------------ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
|+||.||||+| ||-.|.++|++++.+|++|+++..... +.. + ..+.. .++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~---------p-~~~~~--i~v~ 67 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP---------P-PGVKV--IRVE 67 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEE--EE-S
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc---------c-ccceE--EEec
Confidence 57889999976 568999999999999999999987642 110 1 13333 3566
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+.+++.+.+.+.. ..-|++|++|++..
T Consensus 68 sa~em~~~~~~~~---~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 68 SAEEMLEAVKELL---PSADIIIMAAAVSD 94 (185)
T ss_dssp SHHHHHHHHHHHG---GGGSEEEE-SB--S
T ss_pred chhhhhhhhcccc---CcceeEEEecchhh
Confidence 7666666665554 34499999999864
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=64.01 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=63.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---------------------hHHHHHHHHHhhhcCCceE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---------------------DKCEKARKEVVLESKNKYV 195 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---------------------~~~~~~~~~l~~~~~~~~v 195 (429)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.+++++. .|.+.+++.+++..+..++
T Consensus 20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 4678899999997 7899999999999997 899998874 3556666777777777778
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 196 ~~~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
..+..|++. +.+++++ ...|++|.+.
T Consensus 99 ~~~~~~~~~-~~~~~~~-------~~~DlVid~~ 124 (338)
T PRK12475 99 VPVVTDVTV-EELEELV-------KEVDLIIDAT 124 (338)
T ss_pred EEEeccCCH-HHHHHHh-------cCCCEEEEcC
Confidence 888878763 3444443 3568888875
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00073 Score=61.93 Aligned_cols=48 Identities=29% Similarity=0.363 Sum_probs=42.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
..+++||+++|+|.+ .+|+.+|+.|.+.|++|++.+++.+++++..+.
T Consensus 23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 567899999999996 899999999999999999999998877766554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=61.47 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhc
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLES 190 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~ 190 (429)
.++++|.++|.|+ ||.|++++..|++.|+ +|++++|+.++.+...+++....
T Consensus 123 ~~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~ 175 (284)
T PRK12549 123 PDASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF 175 (284)
T ss_pred cCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC
Confidence 3578899999998 7899999999999998 79999999999998888775543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=58.48 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+ ..|.+.+.+.++...+..++..
T Consensus 17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4577889999985 7999999999999997 79999887 3456666777776666666666
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
+..++.+ +.+.+++ ...|++|.+..
T Consensus 96 ~~~~i~~-~~~~~~~-------~~~D~Vi~~~d 120 (202)
T TIGR02356 96 LKERVTA-ENLELLI-------NNVDLVLDCTD 120 (202)
T ss_pred ehhcCCH-HHHHHHH-------hCCCEEEECCC
Confidence 6655543 3333333 35688888753
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0041 Score=63.01 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+.|+|||||++.++|+++|+.|.+.|++|++++.+..........+ .....+...-.+.+...+.+.++.++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~------d~~~~~p~p~~d~~~~~~~L~~i~~~~- 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV------DGFYTIPSPRWDPDAYIQALLSIVQRE- 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh------hheEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence 4689999999999999999999999999999998865543222211 122222212334444444444555554
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|....
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 5899998765
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0041 Score=61.06 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|+||+|++|..+++.+...|++|+.++++.++.+.+ +++. . .. ..|..+.+...+.+.... .+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~lG---a-~~----vi~~~~~~~~~~~~~~~~--~~ 206 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKLG---F-DV----AFNYKTVKSLEETLKKAS--PD 206 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcC---C-CE----EEeccccccHHHHHHHhC--CC
Confidence 588999999999999999888888899999999988876654 2221 1 11 123333233444443332 23
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|+++.+.|.
T Consensus 207 gvdvv~d~~G~ 217 (325)
T TIGR02825 207 GYDCYFDNVGG 217 (325)
T ss_pred CeEEEEECCCH
Confidence 69999998774
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0046 Score=61.62 Aligned_cols=80 Identities=14% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+|++|..+++.....|++|+.++++.++.+.+.+++.. .. ..|-.+.++..+.+.+.. .+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa----~~----vi~~~~~~~~~~~i~~~~--~~ 227 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF----DE----AFNYKEEPDLDAALKRYF--PE 227 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC----CE----EEECCCcccHHHHHHHHC--CC
Confidence 589999999999999999988888899999999988876655433311 11 123332223333333332 23
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|+++.+.|
T Consensus 228 gvD~v~d~vG 237 (348)
T PLN03154 228 GIDIYFDNVG 237 (348)
T ss_pred CcEEEEECCC
Confidence 6999999887
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0091 Score=57.06 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcC
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRD 175 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~ 175 (429)
..|+++.|+|.|+ ||+|.++|+.|++.| .++.+++.+
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567888999987 799999999999999 578888765
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0017 Score=62.77 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=43.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVV 187 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~ 187 (429)
.++++|+++|+|+ ||+|++++..|++.| .+|++++|+.+++++..+++.
T Consensus 119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 119 VDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 4688999999997 899999999999999 789999999998888777653
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=68.78 Aligned_cols=48 Identities=31% Similarity=0.544 Sum_probs=42.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
.++++|+++|+|| ||+|++++..|+++|++|++++|+.++.++..+++
T Consensus 375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV 422 (529)
T ss_pred cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 4688999999999 69999999999999999999999988887776654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.008 Score=73.46 Aligned_cols=186 Identities=14% Similarity=0.100 Sum_probs=111.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.|+.++|++.+++++.+++.+|.++|+.|+++.... ........ .+..+..+.+.-.+.+++..+++.+.+.
T Consensus 1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1825 (2582)
T TIGR02813 1752 KQSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSPW-VVSHSASP-----LASAIASVTLGTIDDTSIEAVIKDIEEK 1825 (2582)
T ss_pred cccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeeccc-cccccccc-----cccccccccccccchHHHHHHHHhhhcc
Confidence 45688899998899999999999999999988764221 11000000 0112223344455667888888888887
Q ss_pred CCCeeEEEEccccCCCCCC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 219 NKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.+.++.+||..+....... .+.......-...+...|.+.|.+.+.+. ..+.+.++.++..
T Consensus 1826 ~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~------------------~~~~~~~~~vsr~ 1887 (2582)
T TIGR02813 1826 TAQIDGFIHLQPQHKSVADKVDAIELPEAAKQSLMLAFLFAKLLNVKLA------------------TNARASFVTVSRI 1887 (2582)
T ss_pred ccccceEEEeccccccccccccccccchhhHHHHHHHHHHHHhhchhhc------------------cCCCeEEEEEEec
Confidence 8899999997775432100 00000001111223345666666655443 3355788999988
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCC
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG 352 (429)
.|.+|..+...+. ...+. --....+++.+|+|+++.|+...-+|...+.|.
T Consensus 1888 ~G~~g~~~~~~~~---~~~~~-~~~~~~a~l~Gl~Ktl~~E~P~~~~r~vDl~~~ 1938 (2582)
T TIGR02813 1888 DGGFGYSNGDADS---GTQQV-KAELNQAALAGLTKTLNHEWNAVFCRALDLAPK 1938 (2582)
T ss_pred CCccccCCccccc---ccccc-ccchhhhhHHHHHHhHHHHCCCCeEEEEeCCCC
Confidence 8766642211000 00000 012357899999999999998877788888775
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=55.24 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|. ||+|.++++.|++.|. ++++++.+. .|.+.+.+.+....+..++..+
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 466788999987 7999999999999997 788887653 2444556666666666666666
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
...++. +....++. ...|++|.+.
T Consensus 87 ~~~i~~-~~~~~l~~------~~~D~Vvdai 110 (231)
T cd00755 87 EEFLTP-DNSEDLLG------GDPDFVVDAI 110 (231)
T ss_pred eeecCH-hHHHHHhc------CCCCEEEEcC
Confidence 655543 33333321 2468877764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.019 Score=49.48 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=73.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+.|+||+|.+|.++|..|+.+|. ++++.+++.++++....++..... ........ .+.+ ..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~-----------~~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYE-----------AL 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGG-----------GG
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cccc-----------cc
Confidence 478999999999999999999874 799999999888777777654322 12222222 2222 22
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
..-|++|..||....+. .+. .+.++.|. .+.+.+.+.+.+ ..+.+.++.+|.
T Consensus 68 ~~aDivvitag~~~~~g-~sR---~~ll~~N~----~i~~~~~~~i~~-----------------~~p~~~vivvtN 119 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPG-MSR---LDLLEANA----KIVKEIAKKIAK-----------------YAPDAIVIVVTN 119 (141)
T ss_dssp TTESEEEETTSTSSSTT-SSH---HHHHHHHH----HHHHHHHHHHHH-----------------HSTTSEEEE-SS
T ss_pred ccccEEEEecccccccc-ccH---HHHHHHhH----hHHHHHHHHHHH-----------------hCCccEEEEeCC
Confidence 46799999999864322 232 23344444 345555555553 335677777764
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.015 Score=56.92 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=72.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+.|.|+ |++|.++|..|+..| .+|++++++.++++....++..... ........ .+.+. .
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~-----------l 66 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSD-----------C 66 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHH-----------h
Confidence 5788896 899999999999999 5899999999988887777754321 11111111 22221 1
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
..-|++|+++|....+. .+.. ..++.|. .+.+...+.+.+ ..+.+.|+++|-.
T Consensus 67 ~~aDIVIitag~~~~~g-~~R~---dll~~N~----~i~~~~~~~i~~-----------------~~~~~~vivvsNP 119 (306)
T cd05291 67 KDADIVVITAGAPQKPG-ETRL---DLLEKNA----KIMKSIVPKIKA-----------------SGFDGIFLVASNP 119 (306)
T ss_pred CCCCEEEEccCCCCCCC-CCHH---HHHHHHH----HHHHHHHHHHHH-----------------hCCCeEEEEecCh
Confidence 35699999999864322 2222 2334443 345555555553 3356788887754
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0072 Score=59.73 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC-C
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN-K 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~-g 220 (429)
|+++||+||+||+|...++-....|++++++..+.++.+ ...++ .. .. ..|..+.+ +.+++.+.. |
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l---GA-d~----vi~y~~~~----~~~~v~~~t~g 209 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL---GA-DH----VINYREED----FVEQVRELTGG 209 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc---CC-CE----EEcCCccc----HHHHHHHHcCC
Confidence 999999999999999999888888988777777776665 44433 21 11 12333333 444444333 2
Q ss_pred -CeeEEEEcccc
Q psy12836 221 -KINVLINNAGV 231 (429)
Q Consensus 221 -~iD~lI~nAG~ 231 (429)
.+|+++...|.
T Consensus 210 ~gvDvv~D~vG~ 221 (326)
T COG0604 210 KGVDVVLDTVGG 221 (326)
T ss_pred CCceEEEECCCH
Confidence 69999998875
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.025 Score=58.98 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-------------
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ------------- 205 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~------------- 205 (429)
...+.+|+|+|+ |.+|+..+..+...|++|+++++++++++.+.+ + +.. ++..|..+.
T Consensus 162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l-----GA~--~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M-----GAE--FLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-----CCe--EEEeccccccccccchhhhcch
Confidence 446899999998 789999999999999999999999988775433 3 122 222232221
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+..+...+.+.+..+..|++|.++|...
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg 260 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPG 260 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCc
Confidence 1112222222333357899999999854
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0053 Score=60.93 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---------------------hHHHHHHHHHhhhcCCceE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---------------------DKCEKARKEVVLESKNKYV 195 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---------------------~~~~~~~~~l~~~~~~~~v 195 (429)
..|++++|+|.|+ ||+|.++|+.|+..|. +|.+++.+. .|.+.+.+.+++..+...+
T Consensus 20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 3577889999999 8999999999999998 899999863 3444555566555565566
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 196 ~~~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
..+..|++. +.+.+++ .+.|++|.+.
T Consensus 99 ~~~~~~~~~-~~~~~~~-------~~~DlVid~~ 124 (339)
T PRK07688 99 EAIVQDVTA-EELEELV-------TGVDLIIDAT 124 (339)
T ss_pred EEEeccCCH-HHHHHHH-------cCCCEEEEcC
Confidence 666667653 3333333 2458887763
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=60.08 Aligned_cols=48 Identities=25% Similarity=0.228 Sum_probs=42.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVV 187 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~ 187 (429)
++++|.++|.|+ ||.|++++..|++.|+ +|.++.|+.++.++.++++.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence 468999999987 9999999999999997 69999999999888877653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0069 Score=58.57 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVL 188 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~ 188 (429)
+.++|+++|.|| ||-|++++..|++.|+ +|+++.|+.++.+++.+.+..
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~ 173 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINN 173 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 567899999998 8999999999999997 699999999999888777643
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0038 Score=63.57 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||+++|.|+ ||+|+.+++.|+++|+ +++++.|+.++.+...+++.. .. +...++....+
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~------~~-----~~~~~~l~~~l----- 240 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN------AS-----AHYLSELPQLI----- 240 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC------Ce-----EecHHHHHHHh-----
Confidence 578999999999 9999999999999996 799999999888777665421 11 11222332222
Q ss_pred hCCCeeEEEEccccCCC
Q psy12836 218 ENKKINVLINNAGVSGC 234 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~ 234 (429)
...|++|++.+...+
T Consensus 241 --~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 241 --KKADIIIAAVNVLEY 255 (414)
T ss_pred --ccCCEEEECcCCCCe
Confidence 356999999886543
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.023 Score=55.79 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
-+++.+.|+|+ |++|.++|..|+..|. ++++++++.+++.....++....+- .++.. .. .+.++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i-~~--~~~~~--------- 70 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI-YA--GDYSD--------- 70 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE-Ee--CCHHH---------
Confidence 35678999998 9999999999999987 7999999999888777777654321 12222 11 22221
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+..-|++|..||....+. .+.. ..++.|.. +.+.+.+.+.+ ....+.++++|-
T Consensus 71 --~~~adivIitag~~~k~g-~~R~---dll~~N~~----i~~~i~~~i~~-----------------~~~~~~vivvsN 123 (315)
T PRK00066 71 --CKDADLVVITAGAPQKPG-ETRL---DLVEKNLK----IFKSIVGEVMA-----------------SGFDGIFLVASN 123 (315)
T ss_pred --hCCCCEEEEecCCCCCCC-CCHH---HHHHHHHH----HHHHHHHHHHH-----------------hCCCeEEEEccC
Confidence 235699999999864332 2322 33444443 34454555542 335678888775
Q ss_pred c
Q psy12836 297 V 297 (429)
Q Consensus 297 ~ 297 (429)
.
T Consensus 124 P 124 (315)
T PRK00066 124 P 124 (315)
T ss_pred c
Confidence 3
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.017 Score=54.36 Aligned_cols=79 Identities=25% Similarity=0.285 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..|++++|+|+++ +|.++++.+...|.+|++++++.++.+.+ +++ .. .. ..|..+.+..+.+. ....
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g~-~~----~~~~~~~~~~~~~~---~~~~ 199 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL---GA-DH----VIDYKEEDLEEELR---LTGG 199 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh---CC-ce----eccCCcCCHHHHHH---HhcC
Confidence 3578999999998 99999999999999999999987765543 222 11 11 12333333333332 2234
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++++++|.
T Consensus 200 ~~~d~vi~~~~~ 211 (271)
T cd05188 200 GGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEECCCC
Confidence 579999999874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0092 Score=58.83 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=60.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHH--H--H
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-------KVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESI--R--A 210 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv--~--~ 210 (429)
.+.||||+|.+|..++..|+..|. ++++.+++. ++++ ....|+.+.... . .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~----------------g~~~Dl~d~~~~~~~~~~ 65 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE----------------GVVMELQDCAFPLLKGVV 65 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc----------------eeeeehhhhcccccCCcE
Confidence 479999999999999999998663 599999876 3322 223454443200 0 0
Q ss_pred HHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 211 FAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
.-....+.+...|++|+.||....+. .+.. +.+..|. .+.+.+.+.+.
T Consensus 66 i~~~~~~~~~~aDiVVitAG~~~~~g-~tR~---dll~~N~----~i~~~i~~~i~ 113 (323)
T cd00704 66 ITTDPEEAFKDVDVAILVGAFPRKPG-MERA---DLLRKNA----KIFKEQGEALN 113 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCcC-CcHH---HHHHHhH----HHHHHHHHHHH
Confidence 00122334457899999999864332 2322 2344444 45666676666
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=58.92 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.++.++|.|+ |.+|+..++.+...|++|++++|+.++++.+...+ . .. +..+..+.+.+.+.+.
T Consensus 164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~----g-~~---v~~~~~~~~~l~~~l~----- 229 (370)
T TIGR00518 164 GVEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF----G-GR---IHTRYSNAYEIEDAVK----- 229 (370)
T ss_pred CCCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc----C-ce---eEeccCCHHHHHHHHc-----
Confidence 356778999988 78999999999999999999999988766554432 1 11 2234555555544432
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
..|++|++++..
T Consensus 230 --~aDvVI~a~~~~ 241 (370)
T TIGR00518 230 --RADLLIGAVLIP 241 (370)
T ss_pred --cCCEEEEccccC
Confidence 469999998663
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.006 Score=59.15 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~ 181 (429)
..+++||+++|.|+ |++|+++|+.|...|++|++..|+.++.+.
T Consensus 146 ~~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 146 DFTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45789999999999 679999999999999999999999876544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=56.86 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+++++|.++++.+...|++|++++++.++.+.+ +++ +.. ...|..+.+..+.+.+.. ..+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~----g~~----~~~~~~~~~~~~~~~~~~--~~~ 207 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL----GAD----VAINYRTEDFAEEVKEAT--GGR 207 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc----CCC----EEEeCCchhHHHHHHHHh--CCC
Confidence 578999999999999999999999999999999988766554 222 111 123444433333333222 124
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|.+++++|.
T Consensus 208 ~~d~vi~~~g~ 218 (323)
T cd05276 208 GVDVILDMVGG 218 (323)
T ss_pred CeEEEEECCch
Confidence 79999999884
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0039 Score=60.22 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=61.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
..++|-||+|.-|.-+|++|+.+|.+-.+.+||..++..+..++-.+ ...++++ ++..+++++++ .
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~-----~~~~p~~--~p~~~~~~~~~-------~ 72 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPE-----AAVFPLG--VPAALEAMASR-------T 72 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCcc-----ccccCCC--CHHHHHHHHhc-------c
Confidence 46899999999999999999999999999999999999888877332 2233333 46666666654 5
Q ss_pred eEEEEccccCC
Q psy12836 223 NVLINNAGVSG 233 (429)
Q Consensus 223 D~lI~nAG~~~ 233 (429)
++|+||+|...
T Consensus 73 ~VVlncvGPyt 83 (382)
T COG3268 73 QVVLNCVGPYT 83 (382)
T ss_pred eEEEecccccc
Confidence 99999999753
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0049 Score=60.46 Aligned_cols=102 Identities=20% Similarity=0.080 Sum_probs=55.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHH-c--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEe-eCCCHHHHHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAK-R--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC-DLASQESIRAFAEEVKKE 218 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~-~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~-Dls~~~sv~~~~~~i~~~ 218 (429)
+.++|.||+|++|.+++..|+. . +..+++.+|++. .....-++... + ... .+.. +-.+ +. +.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~-~-~~~-~i~~~~~~d---~~-------~~ 66 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHI-P-TAV-KIKGFSGED---PT-------PA 66 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcC-C-CCc-eEEEeCCCC---HH-------HH
Confidence 4689999999999999998865 2 457888888753 21111122111 1 011 1111 2112 11 11
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
....|++|.++|....+. .+ -...+..|... ++.+.+.|.
T Consensus 67 l~~~DiVIitaG~~~~~~-~~---R~dll~~N~~i----~~~ii~~i~ 106 (312)
T PRK05086 67 LEGADVVLISAGVARKPG-MD---RSDLFNVNAGI----VKNLVEKVA 106 (312)
T ss_pred cCCCCEEEEcCCCCCCCC-CC---HHHHHHHHHHH----HHHHHHHHH
Confidence 235899999999865432 12 22334555544 555555555
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=55.11 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.+++..+..++..
T Consensus 28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 4678899999999 9999999999999996 688876642 244555566666666666666
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
+...++. +.+.+++ ...|++|.+.
T Consensus 107 ~~~~i~~-~~~~~~~-------~~~DiVi~~~ 130 (245)
T PRK05690 107 INARLDD-DELAALI-------AGHDLVLDCT 130 (245)
T ss_pred EeccCCH-HHHHHHH-------hcCCEEEecC
Confidence 6655543 2333333 2458887765
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=49.56 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.++++|.|+ ||+|.++|+.|+..|. ++.+++.+ ..|.+.+.+.++...+..++..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 567888887 8899999999999998 68888764 23566677777777777788888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
+ +.+...++++ ..|++|.+..
T Consensus 81 ~-~~~~~~~~~~-------~~d~vi~~~d 101 (135)
T PF00899_consen 81 I-DEENIEELLK-------DYDIVIDCVD 101 (135)
T ss_dssp C-SHHHHHHHHH-------TSSEEEEESS
T ss_pred c-cccccccccc-------CCCEEEEecC
Confidence 8 4444555553 4588888743
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0084 Score=57.75 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=57.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+.+|+.++|.|| ||-+++++..|++.|+ +|+++.|+.++++++++.+..... .+ ...+..+.+..+
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~--~~--~~~~~~~~~~~~------- 189 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA--AV--EAAALADLEGLE------- 189 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc--cc--cccccccccccc-------
Confidence 4667999999998 7899999999999995 799999999999998887754332 11 112222222211
Q ss_pred HhCCCeeEEEEccccC
Q psy12836 217 KENKKINVLINNAGVS 232 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~ 232 (429)
..|++||+-...
T Consensus 190 ----~~dliINaTp~G 201 (283)
T COG0169 190 ----EADLLINATPVG 201 (283)
T ss_pred ----ccCEEEECCCCC
Confidence 359999986654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=59.88 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.++++.|+..|. ++.+++++ ..|.+.+.+.+.+..+...+..
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 209 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEA 209 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 3567888898876 8999999999999998 79999987 4566666677766666555555
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
+...+++ +.+.++++ ..|++|++..
T Consensus 210 ~~~~~~~-~~~~~~~~-------~~D~Vv~~~d 234 (376)
T PRK08762 210 VQERVTS-DNVEALLQ-------DVDVVVDGAD 234 (376)
T ss_pred EeccCCh-HHHHHHHh-------CCCEEEECCC
Confidence 5544443 33333332 4588887754
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=54.75 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+ ..|.+.+++.++...+..++..+
T Consensus 18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 567889999995 8999999999999997 67776443 23556666777776666677777
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
..+++ .+.+.++++ ..|++|.+..
T Consensus 97 ~~~i~-~~~~~~~~~-------~~DvVi~~~d 120 (228)
T cd00757 97 NERLD-AENAEELIA-------GYDLVLDCTD 120 (228)
T ss_pred cceeC-HHHHHHHHh-------CCCEEEEcCC
Confidence 66663 333433332 4688888754
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.004 Score=46.92 Aligned_cols=35 Identities=37% Similarity=0.372 Sum_probs=23.9
Q ss_pred CC-CEEEEEcCCCcHHHHHHHHHH-HcCCEEEEEEcC
Q psy12836 141 RG-KIVIVTGANTGIGKAIARELA-KRKAKVIMACRD 175 (429)
Q Consensus 141 ~g-K~vLITGassGIG~aiA~~La-~~G~~Vil~~R~ 175 (429)
+| |+|||+|+|+|.|++-...++ ..|++.+.+...
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 55 899999999999999555544 678888877653
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0093 Score=58.24 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|++++|+||++++|.++++.+...|++|+.++++.++.+.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~ 203 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL 203 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999887765543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=57.71 Aligned_cols=66 Identities=24% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.+++..+..++..
T Consensus 24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 4577889999998 8999999999999997 688887753 466677777877777667776
Q ss_pred EEeeCCC
Q psy12836 198 RKCDLAS 204 (429)
Q Consensus 198 ~~~Dls~ 204 (429)
+...++.
T Consensus 103 ~~~~i~~ 109 (355)
T PRK05597 103 SVRRLTW 109 (355)
T ss_pred EEeecCH
Confidence 6655543
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=58.17 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
|++++|+||+|++|.++++.....|+ +|+.++++.++.+.+.+++.. ..+ .|..+ +++.+.+.++. .+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa----~~v----i~~~~-~~~~~~i~~~~--~~ 223 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF----DAA----INYKT-DNVAERLRELC--PE 223 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC----cEE----EECCC-CCHHHHHHHHC--CC
Confidence 48999999999999999887778898 899999988877655544311 111 23333 22333333332 14
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.+.|.
T Consensus 224 gvd~vid~~g~ 234 (345)
T cd08293 224 GVDVYFDNVGG 234 (345)
T ss_pred CceEEEECCCc
Confidence 69999998774
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=53.75 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+.+.+....+..++..+
T Consensus 24 ~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~ 102 (212)
T PRK08644 24 EKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAH 102 (212)
T ss_pred HHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3567888999996 8999999999999998 488888872 3445555555555555566666
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINN 228 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~n 228 (429)
...+++ +.+.+++ ...|++|.+
T Consensus 103 ~~~i~~-~~~~~~~-------~~~DvVI~a 124 (212)
T PRK08644 103 NEKIDE-DNIEELF-------KDCDIVVEA 124 (212)
T ss_pred eeecCH-HHHHHHH-------cCCCEEEEC
Confidence 655554 2232332 245777766
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.063 Score=47.99 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCce-EEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~-v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+++++|-.|++.|. ++..++++|.+|+.++++++..+.+.+.+.......+ +.++.+|+.+. +.+
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~-- 88 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG-- 88 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc--
Confidence 57789999988776 6667777799999999999888777666654332212 77778887442 111
Q ss_pred CCeeEEEEccccCC
Q psy12836 220 KKINVLINNAGVSG 233 (429)
Q Consensus 220 g~iD~lI~nAG~~~ 233 (429)
+.+|.++.|.....
T Consensus 89 ~~~d~vi~n~p~~~ 102 (188)
T PRK14968 89 DKFDVILFNPPYLP 102 (188)
T ss_pred cCceEEEECCCcCC
Confidence 26899999987653
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=58.05 Aligned_cols=101 Identities=15% Similarity=-0.002 Sum_probs=61.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH--HH--H
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-------KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIR--AF--A 212 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~--~~--~ 212 (429)
++.|+||+|.+|..++..|+..|. .++++++++... +......|+.+..... .. .
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~--------------~a~g~~~Dl~d~~~~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK--------------VLEGVVMELMDCAFPLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc--------------ccceeEeehhcccchhcCceecc
Confidence 378999999999999999998664 599999865421 1122344555544110 00 0
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
....+.+...|++|+.||...... +...+.+..|+ .+.+.+.+.+.
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~----~tr~~ll~~N~----~i~k~i~~~i~ 112 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEG----MERRDLLSKNV----KIFKEQGRALD 112 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCC----CcHHHHHHHHH----HHHHHHHHHHH
Confidence 011234457899999999864321 22444555554 45666666665
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=55.89 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|+|++|+||+|..|.-+.+----+|++|+.++-..+|..-+.+++.. .. -.|-..+ ++.+.+++..- .
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGf----D~----~idyk~~-d~~~~L~~a~P--~ 218 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGF----DA----GIDYKAE-DFAQALKEACP--K 218 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCC----ce----eeecCcc-cHHHHHHHHCC--C
Confidence 499999999999999765544445799999999999998877766521 11 1244443 33333333221 3
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.||+.+-|.|.
T Consensus 219 GIDvyfeNVGg 229 (340)
T COG2130 219 GIDVYFENVGG 229 (340)
T ss_pred CeEEEEEcCCc
Confidence 79999999986
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=54.90 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=57.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+.++|.|+ |-+|+.+|+.|.++|++|+++.+++++.++..++- .....+.+|-++++.++++= ....
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~ag------i~~a 67 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAG------IDDA 67 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcC------CCcC
Confidence 35677776 66999999999999999999999999887744421 15778899999988776651 1245
Q ss_pred eEEEEccc
Q psy12836 223 NVLINNAG 230 (429)
Q Consensus 223 D~lI~nAG 230 (429)
|++|..-|
T Consensus 68 D~vva~t~ 75 (225)
T COG0569 68 DAVVAATG 75 (225)
T ss_pred CEEEEeeC
Confidence 88877655
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.048 Score=53.66 Aligned_cols=73 Identities=27% Similarity=0.334 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|++ |+|...++.....|++|+.++|++++++.+.+. - ... ..|-++.+..+.+-+.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l-G-----Ad~---~i~~~~~~~~~~~~~~------ 229 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL-G-----ADH---VINSSDSDALEAVKEI------ 229 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh-C-----CcE---EEEcCCchhhHHhHhh------
Confidence 48999999999 999887777777999999999999998765442 1 111 2243444444443332
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.|++|..++
T Consensus 230 -~d~ii~tv~ 238 (339)
T COG1064 230 -ADAIIDTVG 238 (339)
T ss_pred -CcEEEECCC
Confidence 799999988
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.03 Score=51.32 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD 175 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~ 175 (429)
..|+.++|+|.|+ ||+|..+|..|++.|. +|++++++
T Consensus 17 ~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3567889999998 7899999999999998 69999887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=55.96 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=40.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---hHHHHHHHHHh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---DKCEKARKEVV 187 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---~~~~~~~~~l~ 187 (429)
..++++|+++|.|| ||-+++++..|+..|+ +|.++.|+. ++.++.++++.
T Consensus 119 ~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 119 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 44678999999998 6669999999999997 799999995 46666666553
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.08 Score=55.15 Aligned_cols=86 Identities=22% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC-------------CH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA-------------SQ 205 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls-------------~~ 205 (429)
...+.+++|.|+ |.+|+..+..+...|++|++++++.++++.+.+ + ...++..|.. +.
T Consensus 161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l-------Ga~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-------GAEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-------CCeEEeccccccccccccceeecCH
Confidence 455789999997 899999999999999999999999887664432 2 1122333331 23
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+..+...+.+.+.....|++|+++-+.+
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG 259 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPG 259 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCC
Confidence 3344444445555668999999995443
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=58.97 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=54.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++.|++++|.|+ |.+|..+++.|...| .+|++++|+.++..+..+++. .. .+ + .++..+.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g-----~~--~i--~---~~~l~~~l~---- 239 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG-----GE--AV--K---FEDLEEYLA---- 239 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-----Ce--Ee--e---HHHHHHHHh----
Confidence 478999999997 999999999999999 689999999888766655431 11 11 1 223333332
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..|++|.+.|...
T Consensus 240 ---~aDvVi~aT~s~~ 252 (417)
T TIGR01035 240 ---EADIVISSTGAPH 252 (417)
T ss_pred ---hCCEEEECCCCCC
Confidence 4699999876543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=59.63 Aligned_cols=47 Identities=34% Similarity=0.570 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l 186 (429)
++.|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.....+++
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~ 226 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF 226 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence 478999999987 9999999999999997 7999999998877666553
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.029 Score=52.57 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~ 176 (429)
..+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+.
T Consensus 23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567888999988 6999999999999997 688887654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=54.86 Aligned_cols=79 Identities=22% Similarity=0.196 Sum_probs=53.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHcC----CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRK----AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G----~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+.|.||+|.+|..++..|+..| .+|++.+.++++++....+++...... .....-.++ +..+. +.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~--d~~~~-------~~ 69 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITD--DPYEA-------FK 69 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECC--chHHH-------hC
Confidence 4689998899999999999999 789999999988887777765432211 001111111 11122 23
Q ss_pred CeeEEEEccccCCC
Q psy12836 221 KINVLINNAGVSGC 234 (429)
Q Consensus 221 ~iD~lI~nAG~~~~ 234 (429)
.-|++|..+|....
T Consensus 70 ~aDiVv~t~~~~~~ 83 (263)
T cd00650 70 DADVVIITAGVGRK 83 (263)
T ss_pred CCCEEEECCCCCCC
Confidence 56999999998654
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=52.45 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~ 176 (429)
..+++++|+|.|+ ||+|..+|+.|+..|. ++++++.+.
T Consensus 20 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 3577888999987 7999999999999996 688877653
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.049 Score=46.84 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=51.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
++|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.++...+..++..+..++.+
T Consensus 2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 678887 8999999999999998 688887541 3444555666666665666666666554
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
... .+.+.+.|++|.+..
T Consensus 81 ~~~--------~~~~~~~diVi~~~d 98 (143)
T cd01483 81 DNL--------DDFLDGVDLVIDAID 98 (143)
T ss_pred hhH--------HHHhcCCCEEEECCC
Confidence 322 122246688877654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.032 Score=56.05 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=48.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEE
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVL 196 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~ 196 (429)
...+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+ ..|.+.+++.+....+..++.
T Consensus 36 q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~ 114 (370)
T PRK05600 36 QERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVN 114 (370)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeE
Confidence 34577888999988 7999999999999996 78888876 235556666666666655666
Q ss_pred EEEeeCC
Q psy12836 197 CRKCDLA 203 (429)
Q Consensus 197 ~~~~Dls 203 (429)
.+...++
T Consensus 115 ~~~~~i~ 121 (370)
T PRK05600 115 ALRERLT 121 (370)
T ss_pred EeeeecC
Confidence 6654443
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=58.43 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEcC----------------CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGA----------------NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGa----------------ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.+|+||.||||+| ||-.|.++|++++.+|++|.++.-... +. .+ ..+..+ +
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~--------~~--~p-~~v~~i--~ 318 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD--------LA--DP-QGVKVI--H 318 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC--------CC--CC-CCceEE--E
Confidence 4699999999987 467999999999999999999975332 10 11 123333 3
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+.+.+++ .+.+.+.+. .|++|++|++..
T Consensus 319 V~ta~eM---~~av~~~~~-~Di~I~aAAVaD 346 (475)
T PRK13982 319 VESARQM---LAAVEAALP-ADIAIFAAAVAD 346 (475)
T ss_pred ecCHHHH---HHHHHhhCC-CCEEEEeccccc
Confidence 4444444 444444443 699999999864
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.03 Score=50.08 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=49.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh------------------hHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDL------------------DKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
|+|.|+ ||+|.++++.|++.|. ++.+++.+. .|.+.+.+.+++..+..++..+...++.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~- 79 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE- 79 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence 677786 8999999999999998 599998875 3344445555555555555555555543
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINN 228 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~n 228 (429)
+.+.+++ .+.|++|.+
T Consensus 80 ~~~~~~l-------~~~DlVi~~ 95 (174)
T cd01487 80 NNLEGLF-------GDCDIVVEA 95 (174)
T ss_pred hhHHHHh-------cCCCEEEEC
Confidence 2232332 245777766
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.024 Score=54.58 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~ 176 (429)
..|++.+|+|.|+ ||+|..++..|+..|. ++.+++.+.
T Consensus 23 ~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3577889999988 7999999999999997 688887753
|
|
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.033 Score=55.46 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
--+|+.+||.||+||+|.+.++-....|+..++++++.++.+ ..+++ +.. ...|..+++-++...+..
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-l~k~l----GAd----~vvdy~~~~~~e~~kk~~--- 222 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-LVKKL----GAD----EVVDYKDENVVELIKKYT--- 222 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-HHHHc----CCc----EeecCCCHHHHHHHHhhc---
Confidence 346889999999999999999888888955555555555443 23333 111 134777744333332221
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
.+++|+|+-|.|..
T Consensus 223 ~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGS 236 (347)
T ss_pred CCCccEEEECCCCC
Confidence 56899999999874
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=60.68 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=41.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
..++++|+++|+|+ ||+|++++..|++.|++|++.+|+.++.++..++
T Consensus 327 ~~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~ 374 (477)
T PRK09310 327 NIPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR 374 (477)
T ss_pred CCCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45678999999996 7999999999999999999999998887766554
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=56.00 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=54.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++|+|||+- |+.+|+.|.++|++|+...++....+...+ .+ ...+..+..+.+++.+++.+- ++|
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-----~g---~~~v~~g~l~~~~l~~~l~~~-----~i~ 67 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-----HQ---ALTVHTGALDPQELREFLKRH-----SID 67 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc-----cC---CceEEECCCCHHHHHHHHHhc-----CCC
Confidence 6899999998 999999999999999999988764433211 11 123445666777777766543 789
Q ss_pred EEEEcccc
Q psy12836 224 VLINNAGV 231 (429)
Q Consensus 224 ~lI~nAG~ 231 (429)
+||..+..
T Consensus 68 ~VIDAtHP 75 (256)
T TIGR00715 68 ILVDATHP 75 (256)
T ss_pred EEEEcCCH
Confidence 99987654
|
This enzyme was found to be a monomer by gel filtration. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.047 Score=53.81 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=95.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcChh--HHHHHHHHHhhhc-CC-ceEEEEEeeCCCHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDLD--KCEKARKEVVLES-KN-KYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~~--~~~~~~~~l~~~~-~~-~~v~~~~~Dls~~~sv~~~ 211 (429)
+.+.|+||+|.+|..+|..|+..|. +++|.+.+.+ ++...+.++.... .- ..+.. .-.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~------- 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI---TDDP------- 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE---ecCc-------
Confidence 4789999999999999999998885 7999998543 3444444443221 10 01111 1111
Q ss_pred HHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC-CCcE
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES-APSR 290 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~ 290 (429)
.+....-|++|..||....+. .+.. +.++.|. .+.+.+.+.+.+ .. +.+.
T Consensus 73 ----~~~~~daDivvitaG~~~k~g-~tR~---dll~~N~----~i~~~i~~~i~~-----------------~~~~~~i 123 (322)
T cd01338 73 ----NVAFKDADWALLVGAKPRGPG-MERA---DLLKANG----KIFTAQGKALND-----------------VASRDVK 123 (322)
T ss_pred ----HHHhCCCCEEEEeCCCCCCCC-CcHH---HHHHHHH----HHHHHHHHHHHh-----------------hCCCCeE
Confidence 122346699999999864332 2322 2344444 456666666653 23 3677
Q ss_pred EEEEcCcccccCCCCcccCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEE
Q psy12836 291 IINVSSVAHKRGTINKEDLNSEN-SYDPTQAYNQSKLANVLFTRELAKRLEG--TGITV 346 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~-~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrV 346 (429)
+|++|-..-..... +.... .++....|+.++..-..|...+++.+.- ..|+.
T Consensus 124 iivvsNPvD~~t~~----~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~ 178 (322)
T cd01338 124 VLVVGNPCNTNALI----AMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKN 178 (322)
T ss_pred EEEecCcHHHHHHH----HHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEE
Confidence 77777422111100 00112 2566778999999999999999998753 34553
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=53.53 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+++++|.++++.+...|++|+++.++.++.+.+ .++ + .. ...+....+..+.+.... ..+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~----g-~~---~~~~~~~~~~~~~~~~~~--~~~ 207 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL----G-AD---IAINYREEDFVEVVKAET--GGK 207 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc----C-Cc---EEEecCchhHHHHHHHHc--CCC
Confidence 578999999999999999999999999999999988766533 322 1 11 112333333333322221 113
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|.+|+++|
T Consensus 208 ~~d~~i~~~~ 217 (325)
T TIGR02824 208 GVDVILDIVG 217 (325)
T ss_pred CeEEEEECCc
Confidence 6999999987
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.019 Score=50.97 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.+++||.++|.|++.-+|..+|+.|.++|++|.++.|+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 478999999999976679999999999999999998874
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.039 Score=49.46 Aligned_cols=45 Identities=33% Similarity=0.313 Sum_probs=38.1
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE 180 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~ 180 (429)
....++.||++.|.|. |.||+++|+.|..-|++|+..+|+.....
T Consensus 29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence 3367899999999987 89999999999999999999999887554
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.049 Score=53.24 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.|+++++|.++++.+.+.|++|+.++++.++.+.+.+.+. -.. ..|..+.+..+.+. +.. .+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g----~~~----~~~~~~~~~~~~v~-~~~--~~ 213 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELG----FDA----AINYKTPDLAEALK-EAA--PD 213 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcC----Cce----EEecCChhHHHHHH-Hhc--cC
Confidence 57899999999999999999999999999999998877665433221 011 12333333323222 222 14
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.++|.
T Consensus 214 ~~d~vi~~~g~ 224 (329)
T cd05288 214 GIDVYFDNVGG 224 (329)
T ss_pred CceEEEEcchH
Confidence 79999998773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.029 Score=55.05 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++.+++++|.|+ |.+|+.+++.|.+.| .+|++++|+.++..+.++++. .. ..+.++..+.+.
T Consensus 175 ~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g-----~~-------~~~~~~~~~~l~---- 237 (311)
T cd05213 175 NLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG-----GN-------AVPLDELLELLN---- 237 (311)
T ss_pred CccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC-----Ce-------EEeHHHHHHHHh----
Confidence 378999999998 999999999999877 578999999988777666542 11 112233333332
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..|++|.+.+...
T Consensus 238 ---~aDvVi~at~~~~ 250 (311)
T cd05213 238 ---EADVVISATGAPH 250 (311)
T ss_pred ---cCCEEEECCCCCc
Confidence 4599999987653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.082 Score=51.82 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=67.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCC-CHHHHHHHHHHHHHh
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLA-SQESIRAFAEEVKKE 218 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls-~~~sv~~~~~~i~~~ 218 (429)
.+.|+||+|.+|..++..|+..|. +|++++|+. ++++....++.......... ..+..+ |.+ .
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~d~~-------~---- 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISSDLS-------D---- 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECCCHH-------H----
Confidence 689999999999999999999986 499999955 55544443333210000000 011111 211 1
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
...-|++|.++|....+ ..+.. +.++.|. .+++.+.+.+.+ ..+.+.||++++..
T Consensus 70 l~~aDiViitag~p~~~-~~~r~---dl~~~n~----~i~~~~~~~i~~-----------------~~~~~~viv~~npv 124 (309)
T cd05294 70 VAGSDIVIITAGVPRKE-GMSRL---DLAKKNA----KIVKKYAKQIAE-----------------FAPDTKILVVTNPV 124 (309)
T ss_pred hCCCCEEEEecCCCCCC-CCCHH---HHHHHHH----HHHHHHHHHHHH-----------------HCCCeEEEEeCCch
Confidence 23569999999985432 12222 2233343 334555555542 23467888888754
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.042 Score=53.17 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++++++|+|+++++|.++++.+...|++|+.++++.++.+.+ .+. +... . .|.......+.+.+.. ...
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~----g~~~--~--~~~~~~~~~~~~~~~~--~~~ 212 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LAL----GAAH--V--IVTDEEDLVAEVLRIT--GGK 212 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc----CCCE--E--EecCCccHHHHHHHHh--CCC
Confidence 578999999999999999999999999999999988766554 222 1111 1 2322222222222221 122
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++++++|.
T Consensus 213 ~~d~vi~~~~~ 223 (328)
T cd08268 213 GVDVVFDPVGG 223 (328)
T ss_pred CceEEEECCch
Confidence 69999998874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.028 Score=54.72 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~ 181 (429)
.+++|++++|.|. |++|+.+++.|...|++|.+++|+.++.+.
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~ 190 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLAR 190 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 4678999999998 679999999999999999999999766443
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.062 Score=49.13 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcC
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRD 175 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~ 175 (429)
.+++.+|+|.|++ |+|.++++.|+..|.. +.+++.+
T Consensus 16 ~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence 4567788998875 5999999999999974 8887754
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.14 Score=50.86 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|++++|.|+ |++|..+++.+...|++|+++++++++++.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 4899999999 9999999998888999999999998887654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.044 Score=53.55 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|+||+|++|.++++.....|++|+.++++.++.+.+.+ + +. ..+ .|..+.+.. +.+.+.. .+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~---Ga-~~v----i~~~~~~~~-~~v~~~~--~~ 210 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L---GF-DAV----FNYKTVSLE-EALKEAA--PD 210 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---CC-CEE----EeCCCccHH-HHHHHHC--CC
Confidence 58999999999999999988888899999999998887655433 2 11 111 243333222 2222222 14
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.+.|.
T Consensus 211 gvd~vld~~g~ 221 (329)
T cd08294 211 GIDCYFDNVGG 221 (329)
T ss_pred CcEEEEECCCH
Confidence 69999988773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.032 Score=58.41 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++.+++++|.|+ |++|..+++.|...|+ +|+++.|+.++.+...+++. +..+.+ ...++...++.
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~----g~~i~~-----~~~~dl~~al~---- 328 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP----DVEIIY-----KPLDEMLACAA---- 328 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC----CCceEe-----ecHhhHHHHHh----
Confidence 488999999999 9999999999999997 69999999988877666542 111211 12223333332
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..|+||.+.+...
T Consensus 329 ---~aDVVIsAT~s~~ 341 (519)
T PLN00203 329 ---EADVVFTSTSSET 341 (519)
T ss_pred ---cCCEEEEccCCCC
Confidence 4599998876543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=48.39 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQE 206 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~ 206 (429)
+++.+++.|.+ -|.++|..|++.|++|+.++.+++..+.+.+. .+.++..|+.+++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCC
Confidence 46789999987 77889999999999999999999876655433 3567788988764
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.11 Score=51.27 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+.+.+.|+|| |.+|..++..++..| ++|++++.+.++++...-++..... +... .+.. -+|.+ .
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~-~i~~-~~d~~----~------ 70 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI-NILG-TNNYE----D------ 70 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCe-EEEe-CCCHH----H------
Confidence 4567899997 889999999999999 7899999988765433322222111 0011 1111 12222 1
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+..-|++|.+||...... .+. ...+..|. .+.+.+.+.+.+ ..+.+.++++|-.
T Consensus 71 -l~~ADiVVitag~~~~~g-~~r---~dll~~n~----~i~~~i~~~i~~-----------------~~p~a~vivvsNP 124 (319)
T PTZ00117 71 -IKDSDVVVITAGVQRKEE-MTR---EDLLTING----KIMKSVAESVKK-----------------YCPNAFVICVTNP 124 (319)
T ss_pred -hCCCCEEEECCCCCCCCC-CCH---HHHHHHHH----HHHHHHHHHHHH-----------------HCCCeEEEEecCh
Confidence 124599999999754321 222 23444555 345566666653 2345667777654
Q ss_pred c
Q psy12836 298 A 298 (429)
Q Consensus 298 ~ 298 (429)
.
T Consensus 125 ~ 125 (319)
T PTZ00117 125 L 125 (319)
T ss_pred H
Confidence 4
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.033 Score=57.46 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=43.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
.++|.|+ |.+|+++++.|.++|+.|++++++.++.+...+.. .+.++.+|.++...++
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~ 59 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLR 59 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHH
Confidence 5788887 99999999999999999999999998876654321 2445556666554443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.039 Score=53.32 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
..+++||.|+|.|+++-.|+.++..|+++|++|.++.|.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 558899999999998889999999999999999888763
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.055 Score=49.39 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=53.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ +|+|.++++.|+..|. ++.+++.+. .|.+.+++.+++..+..++..
T Consensus 17 ~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 17 KRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 3567788999986 5699999999999997 588876542 244455666666666666666
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
....+++ ...+++ .+.|++|.+.
T Consensus 96 ~~~~~~~--~~~~~~-------~~~dvVi~~~ 118 (197)
T cd01492 96 DTDDISE--KPEEFF-------SQFDVVVATE 118 (197)
T ss_pred EecCccc--cHHHHH-------hCCCEEEECC
Confidence 5554542 122222 3458777653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.049 Score=54.00 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|+|+ |++|...++.+...|+ +|+++++++++++.+. ++. . .. ..|..+. ++.+ +.+..
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lG---a-~~----vi~~~~~-~~~~----~~~~~ 233 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMG---A-DK----LVNPQND-DLDH----YKAEK 233 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcC---C-cE----EecCCcc-cHHH----HhccC
Confidence 5899999986 8999999988888898 5888999988776443 231 1 11 1243332 2222 22223
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 234 g~~D~vid~~G~ 245 (343)
T PRK09880 234 GYFDVSFEVSGH 245 (343)
T ss_pred CCCCEEEECCCC
Confidence 569999999884
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.043 Score=45.09 Aligned_cols=71 Identities=24% Similarity=0.311 Sum_probs=52.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
++|.|. +.+|+.+++.|.+.+.+|++++++++..+++.++ .+.++.+|.++++..+++- ..+.+.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~------i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAG------IEKADA 65 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTT------GGCESE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcC------ccccCE
Confidence 567777 4799999999999777999999999887665443 2557889999998776652 125677
Q ss_pred EEEccc
Q psy12836 225 LINNAG 230 (429)
Q Consensus 225 lI~nAG 230 (429)
+|...+
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 777654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG1891|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0056 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=33.7
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
-+.|||||+.-..+.--+||+||.+| .||.+||--..
T Consensus 126 rEgLppGW~rv~s~e~GtyY~~~~~k---~tQy~HPc~~s 162 (271)
T KOG1891|consen 126 REGLPPGWKRVFSPEKGTYYYHEEMK---RTQYEHPCISS 162 (271)
T ss_pred hccCCcchhhccccccceeeeecccc---hhhhcCCCCCC
Confidence 36799999999999999999999999 99999997665
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.056 Score=54.60 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=57.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|+++|.|| |-+|.-+|++|+++| .+|+++.|+.+++.+.++++. .+....+.+.....
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~------------~~~~~l~el~~~l~---- 237 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG------------AEAVALEELLEALA---- 237 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC------------CeeecHHHHHHhhh----
Confidence 489999999998 569999999999999 579999999999999888863 12223344444443
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..|++|.+-|...
T Consensus 238 ---~~DvVissTsa~~ 250 (414)
T COG0373 238 ---EADVVISSTSAPH 250 (414)
T ss_pred ---hCCEEEEecCCCc
Confidence 4589988877654
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.063 Score=52.51 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=39.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
|+|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.+++..+..++..+..++++
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 678886 8999999999999997 688877643 2333444444444444455555555554
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.092 Score=51.03 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|+|+++++|.++++.+...|++|+.++++.++.+.+ +++. . .. ..|..+.+..+.+.+.. ...
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~g---~-~~----~~~~~~~~~~~~~~~~~--~~~ 210 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RALG---A-DV----AVDYTRPDWPDQVREAL--GGG 210 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcC---C-CE----EEecCCccHHHHHHHHc--CCC
Confidence 478999999999999999999999999999999988876544 3321 1 11 12444433333332211 113
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++++.|.
T Consensus 211 ~~d~vl~~~g~ 221 (324)
T cd08244 211 GVTVVLDGVGG 221 (324)
T ss_pred CceEEEECCCh
Confidence 69999998773
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.26 Score=49.08 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=72.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+.+.|+|+ |.+|.++|..|+..|. ++++++.+.+++...+.++.....- ... -+.. -.+.++ .
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~-~~dy~~-----------~ 103 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILA-STDYAV-----------T 103 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEe-CCCHHH-----------h
Confidence 68999996 9999999999998875 7999999998887776666543210 011 1111 112221 2
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
..-|++|..||....+. .+.. +.+..| ..+.+.+.+.+.+ ..+.+.++++|-.
T Consensus 104 ~daDiVVitAG~~~k~g-~tR~---dll~~N----~~I~~~i~~~I~~-----------------~~p~~ivivvtNP 156 (350)
T PLN02602 104 AGSDLCIVTAGARQIPG-ESRL---NLLQRN----VALFRKIIPELAK-----------------YSPDTILLIVSNP 156 (350)
T ss_pred CCCCEEEECCCCCCCcC-CCHH---HHHHHH----HHHHHHHHHHHHH-----------------HCCCeEEEEecCc
Confidence 35699999999864332 2322 223333 3445566666553 3356788888753
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.082 Score=53.91 Aligned_cols=43 Identities=30% Similarity=0.339 Sum_probs=38.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~ 181 (429)
..+.||+++|.|. |.||+.+|+.|...|++|+++++++.+...
T Consensus 208 ~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~ 250 (425)
T PRK05476 208 VLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQ 250 (425)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence 4578999999997 689999999999999999999998876543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.091 Score=53.23 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=48.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..++..+|+|.|+ ||+|.++++.|+..|. ++.+++.+ ..|.+.+++.+++..+..++..
T Consensus 34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 4677889999988 6999999999999997 67777654 1355566777777667666666
Q ss_pred EEeeCCC
Q psy12836 198 RKCDLAS 204 (429)
Q Consensus 198 ~~~Dls~ 204 (429)
+...++.
T Consensus 113 ~~~~~~~ 119 (390)
T PRK07411 113 YETRLSS 119 (390)
T ss_pred EecccCH
Confidence 6655543
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=50.88 Aligned_cols=115 Identities=17% Similarity=0.031 Sum_probs=74.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-------CC--EEEEEEcChhHHHHHHHHHhhhc-CC-ceEEEEEeeCCCHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-------KA--KVIMACRDLDKCEKARKEVVLES-KN-KYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-------G~--~Vil~~R~~~~~~~~~~~l~~~~-~~-~~v~~~~~Dls~~~sv~~~~ 212 (429)
.|.|+|++|.+|.++|..|+.. |. ++++++++.++++..+-+++... +- ..+.+ .. .+.+
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i-~~--~~ye------ 172 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI-GI--DPYE------ 172 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE-ec--CCHH------
Confidence 6899999999999999999988 65 79999999999888777776533 10 11111 11 1222
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+..-|++|..||....+ ..+. .+.++.|. .+++...+.+.+. ..+.+.||
T Consensus 173 -----~~kdaDiVVitAG~prkp-G~tR---~dLl~~N~----~I~k~i~~~I~~~----------------a~p~~ivI 223 (444)
T PLN00112 173 -----VFQDAEWALLIGAKPRGP-GMER---ADLLDING----QIFAEQGKALNEV----------------ASRNVKVI 223 (444)
T ss_pred -----HhCcCCEEEECCCCCCCC-CCCH---HHHHHHHH----HHHHHHHHHHHHh----------------cCCCeEEE
Confidence 234679999999985432 2232 23344454 3455666665521 13567777
Q ss_pred EEcC
Q psy12836 293 NVSS 296 (429)
Q Consensus 293 ~vSS 296 (429)
++|-
T Consensus 224 VVsN 227 (444)
T PLN00112 224 VVGN 227 (444)
T ss_pred EcCC
Confidence 7774
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.44 Score=46.99 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCE 180 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~ 180 (429)
+.+.+.|.|| |.+|..+|..++..|. +|++++.+++++.
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~ 44 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ 44 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhh
Confidence 4468899995 7899999999999994 8999999988653
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=52.26 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..|++.+|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+++.+.+..+..++..
T Consensus 38 ~~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~ 116 (392)
T PRK07878 38 KRLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL 116 (392)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence 3567788999988 7999999999999997 677776542 345555666666666555655
Q ss_pred EEeeCC
Q psy12836 198 RKCDLA 203 (429)
Q Consensus 198 ~~~Dls 203 (429)
+...++
T Consensus 117 ~~~~i~ 122 (392)
T PRK07878 117 HEFRLD 122 (392)
T ss_pred EeccCC
Confidence 554443
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=49.68 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|++++|.|+++++|.++++.....|++|+.++++.++.+.+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 183 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL 183 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999988765544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.073 Score=59.95 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcC-CE-------------EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRK-AK-------------VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G-~~-------------Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
.+.|.|+|.|| |.||+..|+.|++.. +. |++++++.+.++++.+.. + .+..+++|++|.
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~--~~~~v~lDv~D~ 639 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----E--NAEAVQLDVSDS 639 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----C--CCceEEeecCCH
Confidence 35789999997 999999999999763 33 888888888777665543 1 356789999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcccc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGV 231 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~ 231 (429)
+++.++++ .+|+||++...
T Consensus 640 e~L~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhc-------CCCEEEECCCc
Confidence 88777665 36999998764
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.099 Score=56.85 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcCh------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDL------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..|++++|+|.|+ |+|..+|..|+..|. ++++++.+. .|.+.+++.+....+..++..
T Consensus 103 ~~L~~~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 3578899999999 499999999999994 888887642 355556667777777777888
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
+...++ .+.++++++ +.|+||.|.
T Consensus 181 ~~~~i~-~~n~~~~l~-------~~DlVvD~~ 204 (722)
T PRK07877 181 FTDGLT-EDNVDAFLD-------GLDVVVEEC 204 (722)
T ss_pred EeccCC-HHHHHHHhc-------CCCEEEECC
Confidence 877776 455555543 347776654
|
|
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.26 Score=46.97 Aligned_cols=89 Identities=25% Similarity=0.237 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEE--cChh-----H----HHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAK-RKAKVIMAC--RDLD-----K----CEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~-~G~~Vil~~--R~~~-----~----~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
-|.|||.|||+|.|++.-...+= .|++-+.+. |... . .....++.. +..+-....+..|.-+.+-=+
T Consensus 41 PKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A-~~kGlyAksingDaFS~e~k~ 119 (398)
T COG3007 41 PKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKFA-KQKGLYAKSINGDAFSDEMKQ 119 (398)
T ss_pred CceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHHH-HhcCceeeecccchhhHHHHH
Confidence 38999999999999986555442 455544442 2110 0 011112211 122334566778988888888
Q ss_pred HHHHHHHHhCCCeeEEEEcccc
Q psy12836 210 AFAEEVKKENKKINVLINNAGV 231 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~ 231 (429)
..++.+++.+|.+|.+|..-+.
T Consensus 120 kvIe~Ik~~~g~vDlvvYSlAs 141 (398)
T COG3007 120 KVIEAIKQDFGKVDLVVYSLAS 141 (398)
T ss_pred HHHHHHHHhhccccEEEEeccC
Confidence 8999999999999999987543
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD 175 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~ 175 (429)
..+++.+|+|.|+ ||+|..+|+.|+..|. ++++++.+
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4577899999998 8999999999999997 68887754
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.49 Score=46.15 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=70.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+.|.|+ |++|..+|..|+..| .++++++++.++++....++...... .......+ .+.+ . ...
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~-------~----l~~ 66 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA-------D----AAD 66 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH-------H----hCC
Confidence 357787 679999999999999 58999999998888777777554321 11111111 2211 1 235
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
-|++|.+||....+. .+.. ..+..| ..+.+.+.+.+.+ ..+.+.|+++|...
T Consensus 67 aDiVIitag~p~~~~-~~R~---~l~~~n----~~i~~~~~~~i~~-----------------~~p~~~viv~sNP~ 118 (300)
T cd00300 67 ADIVVITAGAPRKPG-ETRL---DLINRN----APILRSVITNLKK-----------------YGPDAIILVVSNPV 118 (300)
T ss_pred CCEEEEcCCCCCCCC-CCHH---HHHHHH----HHHHHHHHHHHHH-----------------hCCCeEEEEccChH
Confidence 699999999864322 2222 223333 3445666666653 33668888887543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.62 Score=45.73 Aligned_cols=116 Identities=16% Similarity=0.046 Sum_probs=72.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCc-eEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNK-YVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~-~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+.|+|+ |.+|.++|..|+..|. ++++++.+.+++...+.++....+-. ...... -.|.++ +.
T Consensus 5 Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~--~~dy~~-----------~~ 70 (312)
T cd05293 5 KVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA--DKDYSV-----------TA 70 (312)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE--CCCHHH-----------hC
Confidence 6788896 9999999999998875 79999999888777677665543110 011111 123221 23
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
.-|++|..||....+ ..+.. ..+..|. .+.+.+.+.+.+ ..+.+.++++|-..
T Consensus 71 ~adivvitaG~~~k~-g~~R~---dll~~N~----~i~~~~~~~i~~-----------------~~p~~~vivvsNP~ 123 (312)
T cd05293 71 NSKVVIVTAGARQNE-GESRL---DLVQRNV----DIFKGIIPKLVK-----------------YSPNAILLVVSNPV 123 (312)
T ss_pred CCCEEEECCCCCCCC-CCCHH---HHHHHHH----HHHHHHHHHHHH-----------------hCCCcEEEEccChH
Confidence 569999999986432 22332 2344443 345666666553 34567888888543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.17 Score=49.65 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=67.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+.|+|++|.+|.++|..|+.+|. ++++++.+ +++..+-++.......++.. +. .+ ++ +.+.+..
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~--~~-~~-~~-------~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTG--YL-GP-EE-------LKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEE--ec-CC-Cc-------hHHhcCC
Confidence 578899999999999999998884 79999988 33333333432211111111 10 00 01 1222346
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
-|++|..||....+. .+. .+.++.|.. +.+...+.+.+ ..+.+.|+++|-..
T Consensus 69 aDivvitaG~~~k~g-~tR---~dll~~N~~----i~~~i~~~i~~-----------------~~p~a~vivvtNPv 120 (310)
T cd01337 69 ADVVVIPAGVPRKPG-MTR---DDLFNINAG----IVRDLATAVAK-----------------ACPKALILIISNPV 120 (310)
T ss_pred CCEEEEeCCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHH-----------------hCCCeEEEEccCch
Confidence 799999999864322 222 233455544 34555555543 33567888887654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.14 Score=51.25 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++++|+|+ |+||...++.+...|+ +|+.++++.++++.+ +++.. .. ..|..+ .+++.+.+.++..
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~Ga----~~----~i~~~~~~~~~~~~v~~~~~- 253 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKLGA----TD----CVNPNDYDKPIQEVIVEITD- 253 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCC----Ce----EEcccccchhHHHHHHHHhC-
Confidence 4789999986 8999999888888898 799999988877655 33311 11 123332 2233333333322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 254 -~g~d~vid~~G~ 265 (368)
T TIGR02818 254 -GGVDYSFECIGN 265 (368)
T ss_pred -CCCCEEEECCCC
Confidence 368999999884
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.33 Score=47.08 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC-CHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA-SQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls-~~~sv~~~~~~i~~~~ 219 (429)
.||++-|+|++| ||.--++.--+-|++|+.++++..+-+++.+.+-++ . -+|.+ |++.++++.+.. .
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd-----~---fv~~~~d~d~~~~~~~~~---d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD-----V---FVDSTEDPDIMKAIMKTT---D 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc-----e---eEEecCCHHHHHHHHHhh---c
Confidence 799999999987 986544444456999999999987777777766321 1 23666 777777766654 2
Q ss_pred CCeeEEEEc
Q psy12836 220 KKINVLINN 228 (429)
Q Consensus 220 g~iD~lI~n 228 (429)
+.+|.++|-
T Consensus 249 g~~~~v~~~ 257 (360)
T KOG0023|consen 249 GGIDTVSNL 257 (360)
T ss_pred Ccceeeeec
Confidence 344444443
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.46 Score=46.40 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l 186 (429)
+.+.|.|| |-+|..+|..++..|. +|+++++++++++....++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl 46 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDI 46 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHH
Confidence 46888998 8899999999999875 9999999888765444333
|
|
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.012 Score=58.26 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=40.7
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeec-C-----CCCcceEEEEEee
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLT-G-----PSSFNLVAFIVHV 80 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~lp~~~~~~~~~~ 80 (429)
++..+.|+|-.++||||||+|..|+ .+.|+.|..=- .-.-+-+. . ..-.|+++|-|-+
T Consensus 11 ~~~~s~w~e~k~~dgRiYYYN~~T~---kS~weKPkell-~~~e~~l~~~~Wke~~TadGkvyyyN~~ 74 (590)
T COG5104 11 GEARSEWEELKAPDGRIYYYNKRTG---KSSWEKPKELL-KGSEEDLDVDPWKECRTADGKVYYYNSI 74 (590)
T ss_pred ccHHHHHHHhhCCCCceEEEecccc---cccccChHHHh-cchHhhhchhhHHHHhhcCCceEEecCc
Confidence 4566789999999999999999999 99999995421 00011110 0 2335599997766
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.13 Score=40.18 Aligned_cols=37 Identities=43% Similarity=0.627 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEc
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACR 174 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R 174 (429)
..++++|+++|.|+ |+.|+.+++.|.+. +.+|.+.+|
T Consensus 18 ~~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 18 NKSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35688999999999 99999999999998 567877766
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.87 Score=44.60 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=63.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcC---CceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESK---NKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~---~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+.|.|+ |.+|..+|..|+.+|. ++++++.+.++++..+.++..... ...+.... .+.+ . .
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~---~~y~-------~----~ 66 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA---GDYD-------D----C 66 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE---CCHH-------H----h
Confidence 567788 9999999999999885 799999998888776666655322 11222222 2322 1 2
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQA 267 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~ 267 (429)
..-|++|..||....+. .+.+ -.+.++.|. .+++...+.+.+
T Consensus 67 ~~aDivvitaG~~~kpg-~tr~-R~dll~~N~----~I~~~i~~~i~~ 108 (307)
T cd05290 67 ADADIIVITAGPSIDPG-NTDD-RLDLAQTNA----KIIREIMGNITK 108 (307)
T ss_pred CCCCEEEECCCCCCCCC-CCch-HHHHHHHHH----HHHHHHHHHHHH
Confidence 35699999999864322 2210 122334443 456677776663
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.19 Score=47.23 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=25.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDL 176 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~ 176 (429)
|+|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 56777 58999999999999997 688877753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.02 Score=52.60 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
..+++||.++|.|| |.+|..-++.|++.|++|++++.+..
T Consensus 4 ~l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 4 FANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred EEEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 45789999999998 67899999999999999999987654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.091 Score=45.20 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
..+++||.++|.|.+.-+|+.++..|.++|++|.++.++.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 5689999999999999999999999999999999987644
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.13 Score=50.66 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|+|+ |++|..+++.+...|++ |++++++.++.+.+ +++. .. ...|..+.+ .+++.+ .. ..
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~g-----a~---~~i~~~~~~-~~~~~~-~~-~~ 229 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KALG-----AD---FVINSGQDD-VQEIRE-LT-SG 229 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhC-----CC---EEEcCCcch-HHHHHH-Hh-CC
Confidence 4899999986 89999999988889998 99999988876544 3331 11 112444433 333222 21 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.+.|.
T Consensus 230 ~~~d~vid~~g~ 241 (339)
T cd08239 230 AGADVAIECSGN 241 (339)
T ss_pred CCCCEEEECCCC
Confidence 368999998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.17 Score=51.59 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA---KVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~---~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.|.+++|.||+|++|...++.+...|+ +|++++++.++++.+.+...... .+... ...|..+.++..+.+.++
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~--~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIEL--LYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceE--EEECCCccccHHHHHHHH
Confidence 478999999999999998876666554 79999999988776544211000 01111 122333322333333332
Q ss_pred HHhCCCeeEEEEcccc
Q psy12836 216 KKENKKINVLINNAGV 231 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~ 231 (429)
. ....+|++|.+.|.
T Consensus 253 t-~g~g~D~vid~~g~ 267 (410)
T cd08238 253 T-GGQGFDDVFVFVPV 267 (410)
T ss_pred h-CCCCCCEEEEcCCC
Confidence 2 12368999988764
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.24 Score=48.30 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|+|+++++|.++++.+...|++++++.++.++.+.+. ++ + .. ...|..+.+...+.+.+... ..
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~----g-~~---~~~~~~~~~~~~~~~~~~~~-~~ 209 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KL----A-AI---ILIRYPDEEGFAPKVKKLTG-EK 209 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc----C-Cc---EEEecCChhHHHHHHHHHhC-CC
Confidence 4789999999999999999999999999888888887766542 22 1 11 11233332212222222211 23
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|.++++.|
T Consensus 210 ~~d~~i~~~~ 219 (334)
T PTZ00354 210 GVNLVLDCVG 219 (334)
T ss_pred CceEEEECCc
Confidence 6899999876
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=54.65 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.+++..|+..|. ++.+++.+. .|.+.+++.+....+..++..
T Consensus 39 ~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~ 117 (679)
T PRK14851 39 ERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP 117 (679)
T ss_pred HHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 4678899999995 7999999999999997 577776531 345555666666666667777
Q ss_pred EEeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 198 RKCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
+...++ .+.+.++++ ..|+||.+.
T Consensus 118 ~~~~i~-~~n~~~~l~-------~~DvVid~~ 141 (679)
T PRK14851 118 FPAGIN-ADNMDAFLD-------GVDVVLDGL 141 (679)
T ss_pred EecCCC-hHHHHHHHh-------CCCEEEECC
Confidence 776665 344444443 346666543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=53.44 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE 180 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~ 180 (429)
...+.||+++|.|.+ .||+.+|+.|...|++|+++.+++.+..
T Consensus 249 ~~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 249 DVMIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCCcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 457999999999986 5999999999999999999988876543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.1 Score=46.87 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=36.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhh
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~ 188 (429)
+|.|.|| |-+|+.+|..++..|++|.+.+++.+.++...+.+..
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 3677888 9999999999999999999999999988877776654
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.16 Score=51.17 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~~~ 218 (429)
.|++++|.|+ |+||...++.+...|+ +|+.++++.++++.+. ++ + .. . ..|..+. ++..+.+.++..
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~----G-a~-~--~i~~~~~~~~~~~~v~~~~~- 266 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EM----G-IT-D--FINPKDSDKPVHERIREMTG- 266 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-Hc----C-Cc-E--EEecccccchHHHHHHHHhC-
Confidence 5889999986 8999999998888999 6999999888776553 22 1 11 1 1243332 223333333322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 267 -~g~dvvid~~G~ 278 (381)
T PLN02740 267 -GGVDYSFECAGN 278 (381)
T ss_pred -CCCCEEEECCCC
Confidence 269999999884
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.19 Score=49.60 Aligned_cols=101 Identities=15% Similarity=0.013 Sum_probs=60.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcCh--hHHHHHHHHHhhhc-CC-ceEEEEEeeCCCHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-------KVIMACRDL--DKCEKARKEVVLES-KN-KYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~-~~-~~v~~~~~Dls~~~sv~~~~ 212 (429)
.+.|+||+|.+|.++|..|+..|. ++++.+.+. +++...+.++.... .. ..+. +.. .+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~--~~-------- 73 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATT--DP-------- 73 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Eec--Ch--------
Confidence 588999999999999999998884 799999965 44555555554322 10 0111 110 11
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
.+....-|++|..||....+ ..+.. +.++.|. .+.+.+.+.+.
T Consensus 74 ---~~~~~daDvVVitAG~~~k~-g~tR~---dll~~Na----~i~~~i~~~i~ 116 (323)
T TIGR01759 74 ---EEAFKDVDAALLVGAFPRKP-GMERA---DLLSKNG----KIFKEQGKALN 116 (323)
T ss_pred ---HHHhCCCCEEEEeCCCCCCC-CCcHH---HHHHHHH----HHHHHHHHHHH
Confidence 12224569999999986432 22332 3344454 34566666665
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.17 Score=48.73 Aligned_cols=42 Identities=33% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|++++|+|+++++|.+++..+...|++|+.++++.++.+.+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA 180 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 578999999999999999999999999999999988765544
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.21 Score=48.71 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.+++++|.|+++++|.++++.....|++|+.++++.++.+.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 468999999999999999999889999999999998876555
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.18 Score=49.10 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|.||++++|.++++.....|++|+.+.++.++.+.+.+ + + .. .+ .+..+.+ ..+.+.+.. ...
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~----g-~~-~~--~~~~~~~-~~~~i~~~~-~~~ 207 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L----G-IG-PV--VSTEQPG-WQDKVREAA-GGA 207 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c----C-CC-EE--EcCCCch-HHHHHHHHh-CCC
Confidence 47899999999999999999988999999999888877555432 2 1 11 11 1223322 222222221 112
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|+++.+.|.
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 69999998874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=48.63 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=66.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+.|+||+|.+|.++|..|+..|. +++++++++ ....+.++.......++. .+. .+ ++ ..+.+..-
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~--~~~-~~-~~-------~~~~~~da 68 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVK--GFS-GE-EG-------LENALKGA 68 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEE--Eec-CC-Cc-------hHHHcCCC
Confidence 68999999999999999998875 799999876 211112222111100111 000 00 00 12234567
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
|++|..||....+ ..+ -.+.++.|.- +.+...+.+.+ ..+.+.|+++|-..
T Consensus 69 DivvitaG~~~~~-g~~---R~dll~~N~~----I~~~i~~~i~~-----------------~~p~~iiivvsNPv 119 (312)
T TIGR01772 69 DVVVIPAGVPRKP-GMT---RDDLFNVNAG----IVKDLVAAVAE-----------------SCPKAMILVITNPV 119 (312)
T ss_pred CEEEEeCCCCCCC-Ccc---HHHHHHHhHH----HHHHHHHHHHH-----------------hCCCeEEEEecCch
Confidence 9999999986432 122 2334555554 45556665553 33567788877654
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >KOG1197|consensus | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.3 Score=41.76 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+|||--|.||.|..+++.+-..|+++|.+..+.++.+.+.+. + .- ...|-+.++-+++..+ + ....
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken-----G--~~--h~I~y~~eD~v~~V~k-i-TngK 214 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN-----G--AE--HPIDYSTEDYVDEVKK-I-TNGK 214 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc-----C--Cc--ceeeccchhHHHHHHh-c-cCCC
Confidence 588999999999999999999999999999999888877654332 1 11 1345555544444332 2 1234
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++.-..|.
T Consensus 215 GVd~vyDsvG~ 225 (336)
T KOG1197|consen 215 GVDAVYDSVGK 225 (336)
T ss_pred Cceeeeccccc
Confidence 78888877765
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.23 Score=47.62 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
+|++++|.|+++++|.++++.....|++|+.++++.++.+.+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 578999999999999999999889999999999888776544
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.24 Score=48.39 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.||++++|.++++.....|++|+.+.++.++.+.+ +++ +. ..+ .|..+. +..+.+.+.. .+
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g~-~~v----~~~~~~-~~~~~~~~~~--~~ 206 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KSL---GC-DRP----INYKTE-DLGEVLKKEY--PK 206 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HHc---CC-ceE----EeCCCc-cHHHHHHHhc--CC
Confidence 578999999999999999998888999999999888766544 222 11 111 233232 2223333322 14
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|.++++.|
T Consensus 207 ~vd~v~~~~g 216 (329)
T cd08250 207 GVDVVYESVG 216 (329)
T ss_pred CCeEEEECCc
Confidence 6899998876
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.47 Score=43.83 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh-----------cCCceEEEEEeeCCCHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-----------SKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-----------~~~~~v~~~~~Dls~~~sv~ 209 (429)
.+.+||+-|++.| .-|..||++|++|+.++.++..++.+.++.... ....++.++.+|+.+...
T Consensus 34 ~~~rvLd~GCG~G---~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-- 108 (213)
T TIGR03840 34 AGARVFVPLCGKS---LDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA-- 108 (213)
T ss_pred CCCeEEEeCCCch---hHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence 4679999999877 457788999999999999998887654432110 112357778888877542
Q ss_pred HHHHHHHHhCCCeeEEEEccccC
Q psy12836 210 AFAEEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~ 232 (429)
+..+..|.++-.+...
T Consensus 109 -------~~~~~fD~i~D~~~~~ 124 (213)
T TIGR03840 109 -------ADLGPVDAVYDRAALI 124 (213)
T ss_pred -------ccCCCcCEEEechhhc
Confidence 1124567777765543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.16 Score=52.27 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~ 181 (429)
...+.||+++|.|.+ .||+.+|+.+...|++|+++.+++.+...
T Consensus 249 ~i~LaGKtVvViGyG-~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 249 DVMIAGKVAVICGYG-DVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred CCccCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 345789999999995 89999999999999999999998866443
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.2 Score=48.47 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=40.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
|+|.|+ ||+|-++++.|+..|. ++.+++.+. .|.+.+++.+++..++.++..+..++.+
T Consensus 2 VlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 2 ILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 677775 7999999999999997 577776532 2444455555555555566666666654
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.22 Score=49.83 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~~~ 218 (429)
.|++++|.|+ +++|..+++.+...|+ +|+.++++.++.+.+ +++. . .. ..|..+. +++.+.+.++..
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~lG---a-~~----~i~~~~~~~~~~~~v~~~~~- 254 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKFG---A-TD----CVNPKDHDKPIQQVLVEMTD- 254 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcC---C-CE----EEcccccchHHHHHHHHHhC-
Confidence 4899999985 8999999998888999 699999998887654 3331 1 11 1243332 234444444432
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|+++.+.|.
T Consensus 255 -~g~d~vid~~g~ 266 (368)
T cd08300 255 -GGVDYTFECIGN 266 (368)
T ss_pred -CCCcEEEECCCC
Confidence 379999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.23 Score=48.21 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..|.+++|.|+++++|.++++.+...|++|+.+.++.++.+.+ +++ +. .. ..|..+....+++ .+.. ..
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g~-~~----~~~~~~~~~~~~~-~~~~-~~ 205 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KAL---GA-DE----VIDSSPEDLAQRV-KEAT-GG 205 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-Hhc---CC-CE----EecccchhHHHHH-HHHh-cC
Confidence 3578999999999999999999999999999999988775544 322 11 11 1233332222222 2221 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|.++.+.|.
T Consensus 206 ~~~d~vl~~~g~ 217 (323)
T cd05282 206 AGARLALDAVGG 217 (323)
T ss_pred CCceEEEECCCC
Confidence 369999998873
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.17 Score=50.28 Aligned_cols=74 Identities=23% Similarity=0.238 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc---ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACR---DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R---~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.|++++|+|+ |++|...++.+...|++|++++| ++++.+. .+++ + .. . +|..+. ++.+ . .
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~-~~~~----G-a~--~--v~~~~~-~~~~----~-~ 234 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADI-VEEL----G-AT--Y--VNSSKT-PVAE----V-K 234 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHc----C-CE--E--ecCCcc-chhh----h-h
Confidence 5889999986 99999999888888999999998 4555442 2222 1 11 1 233322 2222 1 1
Q ss_pred hCCCeeEEEEcccc
Q psy12836 218 ENKKINVLINNAGV 231 (429)
Q Consensus 218 ~~g~iD~lI~nAG~ 231 (429)
..+.+|++|.++|.
T Consensus 235 ~~~~~d~vid~~g~ 248 (355)
T cd08230 235 LVGEFDLIIEATGV 248 (355)
T ss_pred hcCCCCEEEECcCC
Confidence 23578999999874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.3 Score=48.29 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=57.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH---HHHhhhcCCceEEEEEeeCCCHHHHHHHH-
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVVLESKNKYVLCRKCDLASQESIRAFA- 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~---~~l~~~~~~~~v~~~~~Dls~~~sv~~~~- 212 (429)
...++|+++.|.|. |.||+++|+.|...|++|+..+|+.+...... ..+........+..+.+-++. +.+.++
T Consensus 141 ~~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~--~t~~li~ 217 (330)
T PRK12480 141 SKPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK--ESYHLFD 217 (330)
T ss_pred ccccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH--HHHHHHh
Confidence 45789999999987 67999999999999999999999875432211 112222223345555555443 223333
Q ss_pred HHHHHhCCCeeEEEEccccC
Q psy12836 213 EEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~ 232 (429)
++..+. -+.+.++.|+|-.
T Consensus 218 ~~~l~~-mk~gavlIN~aRG 236 (330)
T PRK12480 218 KAMFDH-VKKGAILVNAARG 236 (330)
T ss_pred HHHHhc-CCCCcEEEEcCCc
Confidence 233333 2446666676644
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.3 Score=47.66 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=61.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCc-eEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNK-YVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~-~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+.|.|+|| |+||.++|..|+.++. ++++.+.++++.+..+.++....... .-..+..| .+.+ .+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~-----------~~ 67 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYE-----------DL 67 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChh-----------hh
Confidence 35789999 9999999999988874 79999999776665555554322110 00111222 1222 12
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
..-|++|..||....+. ++..+ .++.|.. ..+.+.+.+.
T Consensus 68 ~~aDiVvitAG~prKpG-mtR~D---Ll~~Na~----I~~~i~~~i~ 106 (313)
T COG0039 68 KGADIVVITAGVPRKPG-MTRLD---LLEKNAK----IVKDIAKAIA 106 (313)
T ss_pred cCCCEEEEeCCCCCCCC-CCHHH---HHHhhHH----HHHHHHHHHH
Confidence 35699999999875443 23333 3445544 3444444444
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.11 Score=50.00 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l 186 (429)
+|.++|.|| ||-+++++..|++.|+ +|.++.|+.++.++.++.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY 166 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence 578999996 9999999999999997 5999999998887766543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.19 Score=51.83 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
...+.++|.|+ |.+|+.+++.|.++|.+|+++++++++.+...++. . .+.++..|.++.+.++++- .
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~--~~~~i~gd~~~~~~L~~~~------~ 295 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----P--NTLVLHGDGTDQELLEEEG------I 295 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----C--CCeEEECCCCCHHHHHhcC------C
Confidence 56789999999 99999999999999999999999998776654432 1 3456788999887664432 2
Q ss_pred CCeeEEEEcc
Q psy12836 220 KKINVLINNA 229 (429)
Q Consensus 220 g~iD~lI~nA 229 (429)
.+.|.+|...
T Consensus 296 ~~a~~vi~~~ 305 (453)
T PRK09496 296 DEADAFIALT 305 (453)
T ss_pred ccCCEEEECC
Confidence 3557777543
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.21 Score=48.40 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRD 175 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~ 175 (429)
|+|.|+ ||+|.++|+.|+..|. ++.+++.+
T Consensus 2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred EEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 677776 7999999999999997 68777754
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.24 Score=48.96 Aligned_cols=102 Identities=16% Similarity=0.023 Sum_probs=59.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcChh--HHHHHHHHHhhhc-CC-ceEEEEEeeCCCHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDLD--KCEKARKEVVLES-KN-KYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~~--~~~~~~~~l~~~~-~~-~~v~~~~~Dls~~~sv~~~ 211 (429)
+.+.|+||+|.+|..+|..|+..|. ++++.+.++. ++...+.++.... +. ..+. ++.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~-----i~~------- 72 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVV-----ITD------- 72 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcE-----Eec-------
Confidence 4789999999999999999998774 7999998543 3443333333221 10 0111 110
Q ss_pred HHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
...+.+..-|++|..||....+. .+. .+.++.|. .+.+.+.+.+.
T Consensus 73 --~~y~~~~daDiVVitaG~~~k~g-~tR---~dll~~Na----~i~~~i~~~i~ 117 (326)
T PRK05442 73 --DPNVAFKDADVALLVGARPRGPG-MER---KDLLEANG----AIFTAQGKALN 117 (326)
T ss_pred --ChHHHhCCCCEEEEeCCCCCCCC-CcH---HHHHHHHH----HHHHHHHHHHH
Confidence 11223346799999999854322 232 33344444 34666666665
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=49.25 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
..+++||.++|.|+|.-+|+.+|..|.++|++|.++.+.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 447999999999999999999999999999999988764
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.13 Score=47.61 Aligned_cols=43 Identities=37% Similarity=0.536 Sum_probs=37.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
++.|.||+|.+|.++++.|++.|++|++.+|+.++.+....+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence 4789999999999999999999999999999998877665543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.3 Score=50.89 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=51.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++++|.|+|.|+ |++|.++|+.|+++|++|.+++++.. ......+.++.. .+.+...+-..
T Consensus 11 ~~~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~~~~----------- 74 (480)
T PRK01438 11 HSDWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL----GATVRLGPGPT----------- 74 (480)
T ss_pred ccCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc----CCEEEECCCcc-----------
Confidence 34577899999997 77999999999999999999986543 333333444332 12222211111
Q ss_pred HHhCCCeeEEEEccccCC
Q psy12836 216 KKENKKINVLINNAGVSG 233 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~ 233 (429)
.....|.+|...|+..
T Consensus 75 --~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 75 --LPEDTDLVVTSPGWRP 90 (480)
T ss_pred --ccCCCCEEEECCCcCC
Confidence 0135799999999853
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.65 Score=45.23 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHH
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCE 180 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~ 180 (429)
+.|.|| |.+|..+|..|+.+|. +|++++++++.+.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~ 36 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQ 36 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHH
Confidence 358898 8899999999998876 9999999987654
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.32 Score=47.90 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..|.+++|+|+++++|.++++.....|++|+.+.++ ++.+ ..+++ + .. ...|..+.+..+.+ .. .
T Consensus 161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~-~~~~~----g-~~---~~~~~~~~~~~~~l----~~-~ 225 (350)
T cd08248 161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIP-LVKSL----G-AD---DVIDYNNEDFEEEL----TE-R 225 (350)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHH-HHHHh----C-Cc---eEEECCChhHHHHH----Hh-c
Confidence 358999999999999999999988999999888765 3222 22222 1 11 12344443333322 22 2
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|+++++.|.
T Consensus 226 ~~vd~vi~~~g~ 237 (350)
T cd08248 226 GKFDVILDTVGG 237 (350)
T ss_pred CCCCEEEECCCh
Confidence 579999998773
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.23 Score=44.99 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
+...+++||.|+|.|-|.-+|+-+|..|+++|++|.++..+.
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~ 96 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDING 96 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCc
Confidence 336689999999999999999999999999999999886543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.48 Score=39.75 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=53.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHH-cCCEEEEE-EcCh----------------------hHHHHHHHHHhhhcCCceEEEEE
Q psy12836 144 IVIVTGANTGIGKAIARELAK-RKAKVIMA-CRDL----------------------DKCEKARKEVVLESKNKYVLCRK 199 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~-~G~~Vil~-~R~~----------------------~~~~~~~~~l~~~~~~~~v~~~~ 199 (429)
.++|.|++|-+|+++++.+.+ .|.+++.+ +|+. +.+++..+ . . . +-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~----~-~--D---Vv 71 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE----E-A--D---VV 71 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT----H----S---EE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc----c-C--C---EE
Confidence 589999999999999999999 68886655 5655 12222211 1 1 1 45
Q ss_pred eeCCCHHHHHHHHHHHHHhCCCeeEEEEcccc
Q psy12836 200 CDLASQESIRAFAEEVKKENKKINVLINNAGV 231 (429)
Q Consensus 200 ~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~ 231 (429)
.|.|.++.+...++.+.++ ++.+++-..|.
T Consensus 72 IDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred EEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 6999999999999998887 67888888776
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.27 Score=49.18 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~~~ 218 (429)
.|.+++|.|+ +++|...++.+...|+ +|+.++++.++.+.+ +++. .. . ..|..+. +++.+.+.++..
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~G-----a~-~--~i~~~~~~~~~~~~v~~~~~- 255 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFG-----VT-E--FVNPKDHDKPVQEVIAEMTG- 255 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC-----Cc-e--EEcccccchhHHHHHHHHhC-
Confidence 5889999986 8999999888888898 799999998876654 2221 11 1 1233321 234444444332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|+++.+.|.
T Consensus 256 -~~~d~vid~~G~ 267 (369)
T cd08301 256 -GGVDYSFECTGN 267 (369)
T ss_pred -CCCCEEEECCCC
Confidence 368999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.25 Score=43.51 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=55.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC-----ceEEEEEeeCCCHHHHHHHHHH--H
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN-----KYVLCRKCDLASQESIRAFAEE--V 215 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~-----~~v~~~~~Dls~~~sv~~~~~~--i 215 (429)
+++-+.|- |-+|..+|+.|+++|++|.+.+|+.++.++..++-...... .....+-.=+.+.+++++++.. +
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 35667776 78999999999999999999999998887765431100000 0123334457788888888887 6
Q ss_pred HHhCCCeeEEEEcc
Q psy12836 216 KKENKKINVLINNA 229 (429)
Q Consensus 216 ~~~~g~iD~lI~nA 229 (429)
.....+=.++|++.
T Consensus 81 ~~~l~~g~iiid~s 94 (163)
T PF03446_consen 81 LAGLRPGKIIIDMS 94 (163)
T ss_dssp GGGS-TTEEEEE-S
T ss_pred hhccccceEEEecC
Confidence 66554445565554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.053 Score=43.95 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.+++||.+||.|| |.+|..=++.|++.|++|.+++...
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 4789999999999 8999999999999999999999886
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.26 Score=49.26 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.|+ |+||..+++.....|++|++++.+.++..+..+++. .. .+ .|..+.+.+++ ..+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~G-----a~-~v--i~~~~~~~~~~-------~~~ 246 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLG-----AD-SF--LVSTDPEKMKA-------AIG 246 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCC-----Cc-EE--EcCCCHHHHHh-------hcC
Confidence 5889999775 899999998888899999988877765544444331 11 11 23333322222 124
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|.+.|.
T Consensus 247 ~~D~vid~~g~ 257 (360)
T PLN02586 247 TMDYIIDTVSA 257 (360)
T ss_pred CCCEEEECCCC
Confidence 68999998873
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.47 Score=48.86 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=35.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
++.|.||.|+||.++|+.|.+.|++|++.+|+.+...+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~ 42 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK 42 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence 58899999999999999999999999999999877544433
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=47.36 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA---KVIMACRD 175 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~---~Vil~~R~ 175 (429)
..++++++++|.|| ||.|+++|+.|++.|. +|.+++|+
T Consensus 20 g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 20 GKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45788999999999 8999999999999997 59999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.28 Score=47.95 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++++++||++++|..+++.....|++|+.++++.++.+.+.+ + +... + .|..+.+..+. +.+... ...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-~----g~~~--~--i~~~~~~~~~~-v~~~~~-~~~ 212 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-I----GAEY--V--LNSSDPDFLED-LKELIA-KLN 212 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c----CCcE--E--EECCCccHHHH-HHHHhC-CCC
Confidence 4555666999999999988777789999999998877665432 2 1111 1 23333222222 222211 136
Q ss_pred eeEEEEccc
Q psy12836 222 INVLINNAG 230 (429)
Q Consensus 222 iD~lI~nAG 230 (429)
+|+++.+.|
T Consensus 213 ~d~vid~~g 221 (324)
T cd08291 213 ATIFFDAVG 221 (324)
T ss_pred CcEEEECCC
Confidence 899999887
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.35 Score=45.57 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=59.6
Q ss_pred CCEEEEEcCC-CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGAN-TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGas-sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+.++=.|++ |.+|..+|.+.-+ ++|+++.+.++..+.+.+.++...-..++.+++.|+.+.... . .+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------~--~~~ 114 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------L--VFA 114 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc------c--ccc
Confidence 4555555655 6677777766554 899999999988888877776655566888888887554322 1 123
Q ss_pred CeeEEEEccccCCCCCC
Q psy12836 221 KINVLINNAGVSGCRKM 237 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~ 237 (429)
++|.+|+|.-.......
T Consensus 115 ~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 115 SFDLIICNPPYFKQGSR 131 (248)
T ss_pred ccCEEEeCCCCCCCccc
Confidence 68999999887655433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.13 Score=47.22 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
..+++||.++|.|| |.+|...++.|.+.|++|++++++.
T Consensus 5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 5 MIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45789999999999 8899999999999999999998764
|
|
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.36 Score=48.92 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|.+++|+|+++++|.++++.+...|++++.+.++.++.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 578999999999999999988888999998888877665443
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.29 Score=40.81 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC--CeeEEEEccc
Q psy12836 153 GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK--KINVLINNAG 230 (429)
Q Consensus 153 GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g--~iD~lI~nAG 230 (429)
|||...+..+...|++|+++++++++.+.+.+ +- .. ..+|-.+.+ +.+++.+..+ .+|++|.|+|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~-~G-----a~---~~~~~~~~~----~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE-LG-----AD---HVIDYSDDD----FVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TT-----ES---EEEETTTSS----HHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh-hc-----cc---ccccccccc----cccccccccccccceEEEEecC
Confidence 68999999999999999999999988765432 21 11 123554443 3344444333 6999999998
Q ss_pred c
Q psy12836 231 V 231 (429)
Q Consensus 231 ~ 231 (429)
.
T Consensus 68 ~ 68 (130)
T PF00107_consen 68 S 68 (130)
T ss_dssp S
T ss_pred c
Confidence 4
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.31 Score=54.37 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.|++++|+|.|+ ||+|..+++.|+..|. ++.+++.+ ..|.+.+++.++...+..++..+
T Consensus 329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 578899999995 7999999999999997 57776653 23555566667666666677777
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
...++ .+.+.++++ ..|+||.+.
T Consensus 408 ~~~I~-~en~~~fl~-------~~DiVVDa~ 430 (989)
T PRK14852 408 PEGVA-AETIDAFLK-------DVDLLVDGI 430 (989)
T ss_pred ecCCC-HHHHHHHhh-------CCCEEEECC
Confidence 66663 344544443 346666543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.26 Score=50.14 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=39.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~ 183 (429)
...+.|++|+|.|++ .||+.+|+.+...|++|+++++++.+++.+.
T Consensus 197 ~~~l~GktVvViG~G-~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 197 DVMIAGKVAVVAGYG-DVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 346789999999995 7999999999999999999999988766543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.37 Score=48.49 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.|+ |++|..+++.....|++|++++++.++..+..+++. .. . ..|..+.+.+.+ ..+
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lG-----a~-~--~i~~~~~~~v~~-------~~~ 241 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLG-----AD-S--FLVTTDSQKMKE-------AVG 241 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCC-----Cc-E--EEcCcCHHHHHH-------hhC
Confidence 5889999986 899999999888899999999887655333333331 11 1 123333222222 224
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.+.|.
T Consensus 242 ~~D~vid~~G~ 252 (375)
T PLN02178 242 TMDFIIDTVSA 252 (375)
T ss_pred CCcEEEECCCc
Confidence 68999999874
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.3 Score=48.89 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|.|+ +++|..++..+...|+ +|+++++++++++.+ +++. .. . ..|..+.+..++ +.+.. .
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~G-----a~-~--~i~~~~~~~~~~-i~~~~--~ 257 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-RELG-----AT-A--TVNAGDPNAVEQ-VRELT--G 257 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHcC-----Cc-e--EeCCCchhHHHH-HHHHh--C
Confidence 4789999985 8999998888888899 699999988877644 3321 11 1 124333322222 22221 2
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++|.+.|.
T Consensus 258 ~g~d~vid~~G~ 269 (371)
T cd08281 258 GGVDYAFEMAGS 269 (371)
T ss_pred CCCCEEEECCCC
Confidence 368999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.2 Score=39.64 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHHHHHcC---CEEEEE-EcChhHHHHHHHHH
Q psy12836 150 ANTGIGKAIARELAKRK---AKVIMA-CRDLDKCEKARKEV 186 (429)
Q Consensus 150 assGIG~aiA~~La~~G---~~Vil~-~R~~~~~~~~~~~l 186 (429)
|+|.+|.++++.|++.| .+|.++ .|++++.++..++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~ 46 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY 46 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence 67999999999999999 899966 99999988877664
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.41 Score=47.61 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~ 182 (429)
.|++++|+| ++++|.++++.+...|+ +|++++++.++.+.+
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 688999997 59999999988888999 999998888766543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.42 Score=48.02 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~~~ 218 (429)
.|.+++|.| .+++|.+++..+...|+ +|+.++++.++.+.+ +++.. .. ..+..+. ++..+.+.+...
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lGa----~~----~i~~~~~~~~~~~~v~~~~~- 258 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELGA----TE----CINPQDYKKPIQEVLTEMTD- 258 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCC----ce----EecccccchhHHHHHHHHhC-
Confidence 478999996 58999999999999999 799999988877655 33311 11 1222221 123333333322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|.++.+.|.
T Consensus 259 -~~~d~vld~~g~ 270 (373)
T cd08299 259 -GGVDFSFEVIGR 270 (373)
T ss_pred -CCCeEEEECCCC
Confidence 469999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.45 Score=46.53 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|.+++|.|+++.+|.++++.+...|++|+.++++.++.+.+
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~ 203 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV 203 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999988876654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=48.42 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~~~ 218 (429)
.|++++|.|+ |++|..+++.....|++ |++++++.++.+.+ +++ + .. .+ .|..+. ++..+.+.++..
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l----G-a~-~~--i~~~~~~~~~~~~v~~~~~- 261 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF----G-VT-DF--INPNDLSEPIQQVIKRMTG- 261 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc----C-Cc-EE--EcccccchHHHHHHHHHhC-
Confidence 5899999986 89999999888888985 77777787776544 332 1 11 11 233321 234444443322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 262 -~g~d~vid~~G~ 273 (378)
T PLN02827 262 -GGADYSFECVGD 273 (378)
T ss_pred -CCCCEEEECCCC
Confidence 369999999884
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.22 Score=43.72 Aligned_cols=45 Identities=33% Similarity=0.345 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
...+.||+++|.|= |.+|+.+|+.|...|++|+++..++-++-++
T Consensus 18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA 62 (162)
T PF00670_consen 18 NLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQA 62 (162)
T ss_dssp -S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH
T ss_pred ceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHh
Confidence 56789999999986 7899999999999999999999998665544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >KOG3209|consensus | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.069 Score=56.18 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=19.4
Q ss_pred cCCCCcc---------eEEEEEee---ecccCccc
Q psy12836 66 TGPSSFN---------LVAFIVHV---TIGMDTQL 88 (429)
Q Consensus 66 ~~~lp~~---------~~~~~~~~---~~~~dp~~ 88 (429)
.++||.+ -++||||+ +++.|||+
T Consensus 220 ~gplp~nwemayte~gevyfiDhntkttswLdprl 254 (984)
T KOG3209|consen 220 LGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRL 254 (984)
T ss_pred cCCCCccceEeEeecCeeEeeecccccceecChhh
Confidence 3577777 89999999 89999994
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.40 E-value=2 Score=42.09 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+.|.|+ |.+|..+|..|+.+| .+|++++++.++.+..+..+..... ........ .+.+ ...
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~-----------~l~ 66 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYA-----------DCK 66 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHH-----------HhC
Confidence 4788898 899999999999999 5899999998877644444432211 01111111 2221 124
Q ss_pred CeeEEEEccccCC
Q psy12836 221 KINVLINNAGVSG 233 (429)
Q Consensus 221 ~iD~lI~nAG~~~ 233 (429)
.-|++|.++|...
T Consensus 67 ~aDiViita~~~~ 79 (308)
T cd05292 67 GADVVVITAGANQ 79 (308)
T ss_pred CCCEEEEccCCCC
Confidence 6699999999754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.36 Score=48.67 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.|.+++|+|+++++|.+++..+...|++++.+.++.++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 578999999999999999988888999999898888776654
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.15 Score=44.88 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
..+++||.++|.|.|.-+|+-++..|.++|+.|.++.....
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~ 71 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK 71 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC
Confidence 45799999999999999999999999999999998765543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.7 Score=43.95 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-E----EEE----EEcChhHHHHHHHHHhhhc-CC-ceEEEEEeeCCCHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-K----VIM----ACRDLDKCEKARKEVVLES-KN-KYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-~----Vil----~~R~~~~~~~~~~~l~~~~-~~-~~v~~~~~Dls~~~sv~~~ 211 (429)
=.|.|+||+|.+|.++|..|+..|. . |.+ ++++.++++..+-++.... +- ..+.+ .. .+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i-~~--~~y------ 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSI-GI--DPY------ 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEE-ec--CCH------
Confidence 3699999999999999999998874 2 444 4888888887777765433 11 11111 11 121
Q ss_pred HHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+..-|++|..||....+. .+. .+.++.|. .+++...+.+.+. ..+.+.|
T Consensus 116 -----~~~kdaDIVVitAG~prkpg-~tR---~dll~~N~----~I~k~i~~~I~~~----------------a~~~~iv 166 (387)
T TIGR01757 116 -----EVFEDADWALLIGAKPRGPG-MER---ADLLDING----QIFADQGKALNAV----------------ASKNCKV 166 (387)
T ss_pred -----HHhCCCCEEEECCCCCCCCC-CCH---HHHHHHHH----HHHHHHHHHHHHh----------------CCCCeEE
Confidence 12346799999999864322 222 22344444 3456666666531 2256777
Q ss_pred EEEcC
Q psy12836 292 INVSS 296 (429)
Q Consensus 292 V~vSS 296 (429)
|++|-
T Consensus 167 iVVsN 171 (387)
T TIGR01757 167 LVVGN 171 (387)
T ss_pred EEcCC
Confidence 77774
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.19 Score=43.53 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=35.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhh
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~ 188 (429)
|+.+|+++-+|+++|..|.++|.+|++. +.+..+....++..
T Consensus 1 V~L~G~~sKvaraiA~~LC~rgv~V~m~--~~~~y~~lk~~~~~ 42 (164)
T PF12076_consen 1 VFLTGNTSKVARAIALALCRRGVQVVML--SKERYESLKSEAPE 42 (164)
T ss_pred CeecccccHHHHHHHHHHHhcCCEEEEe--cHHHHHHHHHHcCH
Confidence 5789999999999999999999999998 56666666665543
|
This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 429 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 5e-31 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 5e-10 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 6e-10 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 6e-10 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 8e-10 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 1e-09 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 1e-09 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 1e-09 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 2e-09 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 2e-09 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 2e-09 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 2e-09 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 2e-09 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 6e-09 | ||
| 2ew8_A | 249 | Crystal Structure Of The (s)-specific 1-phenylethan | 1e-08 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 1e-08 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 1e-08 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 1e-08 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-08 | ||
| 4dml_A | 269 | 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn | 2e-08 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 3e-08 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-08 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 3e-08 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 4e-08 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 8e-08 | ||
| 3icc_A | 255 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car | 9e-08 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-07 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 4e-07 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 5e-07 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 6e-07 | ||
| 3sju_A | 279 | Hedamycin Polyketide Ketoreductase Bound To Nadph L | 7e-07 | ||
| 2gdz_A | 267 | Crystal Structure Of 15-Hydroxyprostaglandin Dehydr | 7e-07 | ||
| 3ak4_A | 263 | Crystal Structure Of Nadh-Dependent Quinuclidinone | 9e-07 | ||
| 3i3o_A | 291 | 2.06 Angstrom Resolution Crystal Structure Of A Sho | 1e-06 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-06 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 1e-06 | ||
| 3qiv_A | 253 | Crystal Structure Of A Putative Short-Chain Dehydro | 1e-06 | ||
| 4ibo_A | 271 | Crystal Structure Of A Putative Gluconate Dehydroge | 1e-06 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 2e-06 | ||
| 3nug_A | 247 | Crystal Structure Of Wild Type Tetrameric Pyridoxal | 2e-06 | ||
| 3ijr_A | 291 | 2.05 Angstrom Resolution Crystal Structure Of A Sho | 3e-06 | ||
| 1edo_A | 244 | The X-Ray Structure Of Beta-Keto Acyl Carrier Prote | 4e-06 | ||
| 3r1i_A | 276 | Crystal Structure Of A Short-Chain Type Dehydrogena | 4e-06 | ||
| 3ndr_A | 247 | Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro | 4e-06 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 5e-06 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 5e-06 | ||
| 1h5q_A | 265 | Mannitol Dehydrogenase From Agaricus Bisporus Lengt | 5e-06 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 6e-06 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 7e-06 | ||
| 1yxm_A | 303 | Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa | 7e-06 | ||
| 1iy8_A | 267 | Crystal Structure Of Levodione Reductase Length = 2 | 7e-06 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 7e-06 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 8e-06 | ||
| 1doh_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 9e-06 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 9e-06 | ||
| 1ybv_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 1e-05 | ||
| 3p19_A | 266 | Improved Nadph-Dependent Blue Fluorescent Protein L | 1e-05 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 1e-05 | ||
| 2yz7_A | 260 | X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F | 2e-05 | ||
| 1uzl_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 2e-05 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 3e-05 | ||
| 4iqg_C | 271 | Crystal Structure Of Bpro0239 Oxidoreductase From P | 3e-05 | ||
| 4fn4_A | 254 | Short-chain Nad(h)-dependent Dehydrogenase/reductas | 3e-05 | ||
| 3pk0_A | 262 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 3e-05 | ||
| 3l77_A | 235 | X-Ray Structure Alcohol Dehydrogenase From Archaeon | 3e-05 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 4e-05 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 4e-05 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 6e-05 | ||
| 3tfo_A | 264 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car | 6e-05 | ||
| 2nm0_A | 253 | Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl | 7e-05 | ||
| 4e3z_A | 272 | Crystal Structure Of A Oxidoreductase From Rhizobiu | 1e-04 | ||
| 1yb1_A | 272 | Crystal Structure Of Human 17-Beta-Hydroxysteroid D | 1e-04 | ||
| 1geg_A | 256 | Cryatal Structure Analysis Of Meso-2,3-Butanediol D | 2e-04 | ||
| 2qq5_A | 260 | Crystal Structure Of Human Sdr Family Member 1 Leng | 2e-04 | ||
| 3tzq_B | 271 | Crystal Structure Of A Short-Chain Type Dehydrogena | 2e-04 | ||
| 4eso_A | 255 | Crystal Structure Of A Putative Oxidoreductase Prot | 2e-04 | ||
| 3vc7_A | 254 | Crystal Structure Of A Putative Oxidoreductase From | 2e-04 | ||
| 3n74_A | 261 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-04 | ||
| 3enn_A | 249 | 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 2e-04 | ||
| 3emk_A | 246 | 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 2e-04 | ||
| 3is3_A | 270 | Crystal Structure Of 17beta-Hydroxysteroid Dehydrog | 3e-04 | ||
| 3uf0_A | 273 | Crystal Structure Of A Putative Nad(P) Dependent Gl | 4e-04 | ||
| 3ezl_A | 256 | Crystal Structure Of Acetyacetyl-Coa Reductase From | 4e-04 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 4e-04 | ||
| 2ntn_A | 267 | Crystal Structure Of Maba-c60v/g139a/s144l Length = | 6e-04 | ||
| 2ph3_A | 245 | Crystal Structure Of 3-oxoacyl-[acyl Carrier Protei | 6e-04 | ||
| 2pd6_A | 264 | Structure Of Human Hydroxysteroid Dehydrogenase Typ | 6e-04 | ||
| 1uzm_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 7e-04 | ||
| 3itd_A | 270 | Crystal Structure Of An Inactive 17beta-Hydroxyster | 7e-04 | ||
| 2zat_A | 260 | Crystal Structure Of A Mammalian Reductase Length = | 7e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279 | Back alignment and structure |
|
| >pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267 | Back alignment and structure |
|
| >pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263 | Back alignment and structure |
|
| >pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291 | Back alignment and structure |
|
| >pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244 | Back alignment and structure |
|
| >pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276 | Back alignment and structure |
|
| >pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303 | Back alignment and structure |
|
| >pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase Length = 267 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein Length = 266 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260 | Back alignment and structure |
|
| >pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271 | Back alignment and structure |
|
| >pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254 | Back alignment and structure |
|
| >pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262 | Back alignment and structure |
|
| >pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264 | Back alignment and structure |
|
| >pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253 | Back alignment and structure |
|
| >pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272 | Back alignment and structure |
|
| >pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272 | Back alignment and structure |
|
| >pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256 | Back alignment and structure |
|
| >pdb|2QQ5|A Chain A, Crystal Structure Of Human Sdr Family Member 1 Length = 260 | Back alignment and structure |
|
| >pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 271 | Back alignment and structure |
|
| >pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255 | Back alignment and structure |
|
| >pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254 | Back alignment and structure |
|
| >pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Brucella Melitensis Length = 261 | Back alignment and structure |
|
| >pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249 | Back alignment and structure |
|
| >pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246 | Back alignment and structure |
|
| >pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273 | Back alignment and structure |
|
| >pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267 | Back alignment and structure |
|
| >pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein] Reductase Ttha0415 From Thermus Thermophilus Length = 245 | Back alignment and structure |
|
| >pdb|2PD6|A Chain A, Structure Of Human Hydroxysteroid Dehydrogenase Type 8, Hsd17b8 Length = 264 | Back alignment and structure |
|
| >pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-118
Identities = 100/279 (35%), Positives = 134/279 (48%), Gaps = 41/279 (14%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S + V++TGAN+G+G ARELA+R A VIMA RD K E A + + V R
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVR 67
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
+ DL S+R FA+ V +VLINNAG+ LT + E Q+G NH+GHF LT
Sbjct: 68 ELDLQDLSSVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN-SENSYDP 317
LLL +L R++ VSS+AH G IN EDLN Y P
Sbjct: 124 NLLLPRL----------------------TDRVVTVSSMAHWPGRINLEDLNWRSRRYSP 161
Query: 318 TQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
AY+QSKLAN+LFT EL +RL G+ + A HPG +T++ S L ++
Sbjct: 162 WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG---RKLGDALMS 218
Query: 376 PLVWLFIKSPRQGAQTIVYASLDP----SLENVSGKYFA 410
+ GA+ +YA+ S Y
Sbjct: 219 AATRVVATDADFGARQTLYAASQDLPGDSFVGPRFGYLG 257
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 4e-93
Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 77/309 (24%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
S+ + +VTG N GIG AI R+L + V++ RD+ + + A ++ L+++
Sbjct: 1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ--LQAEGLSPRF 58
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHF 255
+ D+ +SIRA + ++KE ++VL+NNAG++ T + E+ + N G
Sbjct: 59 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR 118
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT----------IN 305
+ LL ++ R++NVSS+ R
Sbjct: 119 DVCTELLPLIKPQ--------------------GRVVNVSSIMSVRALKSCSPELQQKFR 158
Query: 306 KEDLNSEN-------------------SYDPTQAYNQSKLANVLFTRELAKRL----EGT 342
E + E P+ AY +K+ + +R A++L +G
Sbjct: 159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGD 218
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVY-ASLDPSL 401
I +NA PG V TD+ KSP +GA+T VY A L P
Sbjct: 219 KILLNACCPGWVRTDMAGPK------------------ATKSPEEGAETPVYLALLPPDA 260
Query: 402 ENVSGKYFA 410
E G++ +
Sbjct: 261 EGPHGQFVS 269
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 2e-74
Identities = 70/344 (20%), Positives = 123/344 (35%), Gaps = 104/344 (30%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK 191
+ T + + +VTG N GIG I ++L+ V++ CRD+ K +A ++ + S
Sbjct: 2 PETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK-LKNSN 60
Query: 192 NKYVLCRKCDLASQ-ESIRAFAEEVKKENKKINVLINNAGVSG----------------- 233
++ V+ + D+ ++ + A+ +K K+++L+NNAGV+G
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 234 ---------------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLI 278
T E E L +N+ G +T +L+ LQ
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQL----------- 169
Query: 279 WYYVFQESAPSRIINVSSVAHKRGTINKED------------------------------ 308
S RI+NVSS ++ E
Sbjct: 170 -------SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKEN 222
Query: 309 -LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
+ + AY SK +TR LA ++ VN V PG+V T++
Sbjct: 223 LIETNGWPSFGAAYTTSKACLNAYTRVLANKIP--KFQVNCVCPGLVKTEMNYGI----- 275
Query: 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411
+ +GA+ +V +L P + SG ++ C
Sbjct: 276 -------------GNYTAEEGAEHVVRIALFPD-DGPSGFFYDC 305
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-42
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 52/261 (19%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+IV++TGA GIG+ A E AK K+K+++ + E+ + + V
Sbjct: 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK--CKGLGAKVHTFVV 87
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D +++E I + A++VK E +++L+NNAGV + + +IE VN + HF T
Sbjct: 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 147
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + N I+ V+S A P
Sbjct: 148 KAFLPAMTKNNH------------------GHIVTVASAAGHVSV-------------PF 176
Query: 319 Q-AYNQSKLANVLFTRELA---KRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
AY SK A V F + L L+ TG+ + P VNT +++ ST +
Sbjct: 177 LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------STSLG 229
Query: 375 KPLVWLFIKSPRQGAQTIVYA 395
L P + +++
Sbjct: 230 PTL------EPEEVVNRLMHG 244
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 6e-42
Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 24/222 (10%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
V+VTGAN GIG + ++L K K +I RD++K + + ++ +VL
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVL--PL 58
Query: 201 DLASQESIRAFAEEVKKE--NKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHF 255
+ +S+ F +V + + +++LINNAGV TE I QL VN
Sbjct: 59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV 118
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
LLT LL L+ S+ S L + + +I +SS G+I D S ++
Sbjct: 119 LLTQKLLPLLKNAASKESGDQL-------SVSRAAVITISSGL---GSI--TDNTSGSAQ 166
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P AY SK A +F R LA L+ + V PG V T+
Sbjct: 167 FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN 208
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-41
Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 39/268 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+ VTG G+G + R+L + KV +A D +KA + E V+ +
Sbjct: 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+AS+E + A+EV+ +++L NNAGV+ + + + + + LGVN G
Sbjct: 67 DVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGV 126
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ ++ + E ++N +S+A +
Sbjct: 127 TTFVPRMVERVKA------------GEQKGGHVVNTASMAAFLAA-------------GS 161
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV---- 373
YN +K A + L L I V+ + PG+V + I L V
Sbjct: 162 PGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVD 221
Query: 374 ------LKPLVWLFIKSPRQGAQTIVYA 395
L + + P ++ A
Sbjct: 222 KTAVERLAGVHEFGM-EPDVIGARVIEA 248
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-41
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 35/225 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G+ +VTG +GIG A A E A+R A+++++ D E+A L + C
Sbjct: 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG--LRGQGFDAHGVVC 87
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+ + + A+E + ++V+ +NAG+ + + + + ++ G
Sbjct: 88 DVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAV 147
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L +L I +S A
Sbjct: 148 EAFLPRLLEQ-----------------GTGGHIAFTASFAGLVPN-------------AG 177
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
Y +K V LA+ ++ GI V+ + P +V T ++ +S
Sbjct: 178 LGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNS 222
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-40
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK---VIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+++TG N G+G + + L + CR+ ++ ++ L + + +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED---LAKNHSNIHILE 78
Query: 200 CDLASQESIRAFAEEVKKE--NKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGH 254
DL + ++ +++ ++ +NVL NNAG++ +T +++ L N +
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L L L+ + + IIN+SS+ G+I N+
Sbjct: 139 IMLAKACLPLLKKAAKANESQPM-------GVGRAAIINMSSIL---GSI------QGNT 182
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
AY SK A T+ L+ L I ++HPG V TD
Sbjct: 183 DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 225
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-39
Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 52/268 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+IVTGA +G+G+A+ L +R +V M R + ++ + V+ D
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVAD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
LA E + + ++++ AG + T E+I + N + L+
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQ 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + NV S A + G +
Sbjct: 118 QTVRLIGER-------------------GGVLANVLSSAAQVGK-------------ANE 145
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378
+ Y SK F L L+ + + + ++P + ++ ++ + D
Sbjct: 146 SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDP----------- 194
Query: 379 WLFIKSPRQGAQTIVYASLDPSLENVSG 406
+P A ++ A S +V+
Sbjct: 195 -SGFMTPEDAAAYMLDALEARSSCHVTD 221
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-38
Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 46/265 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K VI A GIG +REL KR K + ++ A E+ + + D
Sbjct: 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN-PTALAELKAINPKVNITFHTYD 63
Query: 202 L-ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
+ + +++ + K +++LIN AG+ L + +IE + +N G T
Sbjct: 64 VTVPVAESKKLLKKIFDQLKTVDILINGAGI------LDDHQIERTIAINFTGLVNTTTA 117
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+LD + I N+ SV
Sbjct: 118 ILDFWDKR---------------KGGPGGIIANICSVTGFNAI-------------HQVP 149
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH----SSYYDSWLSTVVLK 375
Y+ SK A V FT LAK TG+T +++PGI T ++ ++
Sbjct: 150 VYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH 209
Query: 376 PLVWLFIKSPRQGAQTIVYASLDPS 400
P ++ Q Q V A
Sbjct: 210 PT-----QTSEQCGQNFVKAIEANK 229
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-38
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ ++TG+++GIG AIA AK A +++ R +D+ +A + + + + VL
Sbjct: 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVR-VLEVAV 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D+A+ E + A E V+ ++L+NNAG ++ +EK + + M L
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLA 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ ++A II+ +S+ + +
Sbjct: 125 RGLVPGMRAR--GG----------------GAIIHNASICAVQPLWYE------------ 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
YN +K A ++F++ LA + I VN ++PG++ T
Sbjct: 155 PIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWI 196
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-37
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+I +VTG + GIG+ IA+ L + A+V + RD + C L + D
Sbjct: 29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATR--LSAYGD-CQAIPAD 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ----LGVNHMGHFLL 257
L+S+ R A+ + + + ++++L+NNAG S E + +N F
Sbjct: 86 LSSEAGARRLAQALGELSARLDILVNNAGTS--WGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
LL L+ + S P+R+IN+ SVA +
Sbjct: 144 IQQLLPLLRRSAS--------------AENPARVINIGSVAGISAMG-----------EQ 178
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD----ILRHSSYYDSWLSTVV 373
AY SK A +R LAK L G I VN + PG + I ++ +++
Sbjct: 179 AYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIP 238
Query: 374 LK 375
+
Sbjct: 239 MG 240
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-37
Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 47/270 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY-VLCRK 199
+ + I+TGA+ GIG IA LA +V++ R EK E++ +K+ +
Sbjct: 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLP 65
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D+ +++ ++ +++L+N A + L + + +N + + +
Sbjct: 66 LDITDCTKADTEIKDIHQKYGAVDILVNAAAM-FMDGSLSEPVDNFRKIMEINVIAQYGI 124
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + ++ Q++ I NV+S A K G
Sbjct: 125 LKTVTEIMKV----------------QKNG--YIFNVASRAAKYGF-------------A 153
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
Y +K A + L + L GI V + PG VNTD+ + + + +++
Sbjct: 154 DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAG--TPFKDEEMIQ- 210
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
P TI +
Sbjct: 211 --------PDDLLNTIRCLLNLSENVCIKD 232
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 8e-37
Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 44/233 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ ++TGA+ G G+A+A +LA+ + ++++ R + ++E+ + + V+
Sbjct: 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLA 65
Query: 199 KCDLASQESIRAFAEEVKK----ENKKINVLINNAGV-----SGCRKMLTEEKIELQLGV 249
DL ++ ++ V++ E + +LINNA G + ++ +
Sbjct: 66 AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N LT L+ Q ++N+SS+ +
Sbjct: 126 NLTSMLCLTSGTLNAFQD----------------SPGLSKTVVNISSLCALQPY------ 163
Query: 310 NSENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y K A + + LA E + V + PG ++ D+ +
Sbjct: 164 -------KGWGLYCAGKAARDMLYQVLA--AEEPSVRVLSYAPGPLDNDMQQL 207
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-36
Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 55/263 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK VIVTGA+ GIG+ +A LAK A V++ R + +K LE
Sbjct: 27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH-CLELGAASAHYIAG 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ F + K +++LI N + L + I + VN + + +L
Sbjct: 86 TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T+ L L+ Q + I+ VSS+A K P
Sbjct: 145 TVAALPMLK-----------------QSNG--SIVVVSSLAGKVAY-------------P 172
Query: 318 TQ-AYNQSKLANVLFTRELAKRLE----GTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372
AY+ SK A F + R E +++ G+++T+ +
Sbjct: 173 MVAAYSASKFALDGFFSSI--RKEYSVSRVNVSITLCVLGLIDTETAMKA---------- 220
Query: 373 VLKPLVWLFIKSPRQGAQTIVYA 395
+ +V + + A I+
Sbjct: 221 -VSGIVHMQAAPKEECALEIIKG 242
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-36
Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 51/229 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK I+TGA GIGK IA A A V+++ + D E ++ +CD
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE--IQQLGGQAFACRCD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ S++ + A A+ + K+++L+NNAG G K +N F L+
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPFDMPMADFRRAYELNVFSFFHLS- 126
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q AP I+ ++S+A +
Sbjct: 127 ------------------------QLVAPEMEKNGGGVILTITSMAAENKN--------- 153
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A R +A L I VN + PG + TD L+
Sbjct: 154 ----INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK 198
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-36
Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 38/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V+++G +G +AR A++ A +++A R +++ E K+V + L D
Sbjct: 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQV--TDTGRRALSVGTD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ + +E K +++V+INNA K T E + + + G L
Sbjct: 69 ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ + ++NV+S+ +
Sbjct: 129 QGFTPALEES-------------------KGAVVNVNSMVVRHSQ-------------AK 156
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + ++ LA L GI VN+V PG + L+
Sbjct: 157 YGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLK 199
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-36
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 37/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VT + GIG AIAR LA+ A V+++ R + ++ L+ + V C
Sbjct: 14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT--LQGEGLSVTGTVCH 71
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ E + +++L++NA V+ + TEE + L VN L+T
Sbjct: 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ +++ ++ VSSV P
Sbjct: 132 KAVVPEMEKRGG------------------GSVLIVSSVGAYHPF-------------PN 160
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
YN SK A + T+ LA L I VN + PG++ T+ +
Sbjct: 161 LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQ 203
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-36
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 41/228 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K VI+TG++ GIG+ A A+ A V + R ++ E+ R+ ++ K V
Sbjct: 6 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIEL---QLGVNHMGH 254
D+ +++ K+ KI+VL+NNAG + T++ I++ L +N
Sbjct: 66 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAV 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VAHKRGTINKEDLNSEN 313
+T + L A+ I+NVSS VA +
Sbjct: 126 IEMTKKVKPHLVAS-------------------KGEIVNVSSIVAGPQA----------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P Y +K A +TR A L GI VN+V PG+V T
Sbjct: 156 --QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTN 201
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-36
Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 39/226 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
GK VI+TG++ GIG++ A AK A+V + R+ D+ E+ +++++ + +
Sbjct: 26 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+ + KI++L+NNAG + E + +N
Sbjct: 86 DVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 145
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS-VAHKRGTINKEDLNSENSY 315
+T + L I+NVSS VA +
Sbjct: 146 MTQKTKEHLIKT-------------------KGEIVNVSSIVAGPQA------------- 173
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A +TR A L G+ VN+V PG V T +
Sbjct: 174 HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMG 219
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 6e-36
Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 34/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +VTG ++GIG A L + A V RD ++ A + + CD
Sbjct: 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +RAFAE ++ ++L+NNAG T+E +L +
Sbjct: 68 VLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVR 127
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L +L++ + I+ V+S+ + +P
Sbjct: 128 AFLPQLES--RAD----------------AAIVCVNSLLASQP-------------EPHM 156
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ ++ R +A G+ VN + G+V + R
Sbjct: 157 VATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWR 198
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 7e-36
Identities = 58/222 (26%), Positives = 82/222 (36%), Gaps = 41/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK IV G G+G A R L + A+V++ R+ + R+E V + D
Sbjct: 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+A I + I++L NAGVS +E + Q VN G F
Sbjct: 63 IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTV- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
Q + +E I+ SSVA + G P
Sbjct: 122 ------QRLTP-----------LIREGG--SIVFTSSVADEGGH-------------PGM 149
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y+ SK A V F LA L GI VN+V PG ++T
Sbjct: 150 SVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKG 191
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 8e-36
Identities = 55/227 (24%), Positives = 81/227 (35%), Gaps = 51/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI ++TGA +GIG A A+ A+V + R D + A E+ + + D
Sbjct: 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQAD 83
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
A+ + E+VK E +I+VL NAG + TEE+ + N G
Sbjct: 84 SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTV- 142
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNSENS 314
Q++ P S ++ S A GT
Sbjct: 143 ------------------------QKALPLLARGSSVVLTGSTAGSTGT----------- 167
Query: 315 YDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P + Y SK A F R L+ GI +N + PG T L
Sbjct: 168 --PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLV 212
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 8e-36
Identities = 56/279 (20%), Positives = 98/279 (35%), Gaps = 47/279 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+++VTG + GIGK+I L ++ + + E K++ + ++ D
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVY--GVARSEAPLKKLKEKYGDR-FFYVVGD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ ++ K + KI+ L+ NAGV + + + +N L
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L +L+ ++ VSS A +
Sbjct: 119 GIALPELKKT-------------------NGNVVFVSSDACNMY-------------FSS 146
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH--SSYYDSWLSTVVLK 375
Y SK A F LA E + AV PGIV+TD+ + + S +S LK
Sbjct: 147 WGAYGSSKAALNHFAMTLAN--EERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLK 204
Query: 376 PLVWLF----IKSPRQGAQTIVYASLDPSLENVSGKYFA 410
L + A +L + V+G+Y +
Sbjct: 205 MFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLS 243
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-35
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 37/225 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-SKNKYVLCRKC 200
G++++VTGA GIG A AR A A V++ R + ++ ++
Sbjct: 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL 73
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ A+ + R A V+ E +++ L++NA + G R L + E + VN F+L
Sbjct: 74 ENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFML 133
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T LL L+ E A I SS ++G
Sbjct: 134 TRALLPLLKR----------------SEDA--SIAFTSSSVGRKGR-------------A 162
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTDILR 360
AY SK A + LA LEG T + N+++PG T +
Sbjct: 163 NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRA 207
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-35
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 41/228 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K+ I+TG++ GIG+A A A+ AKV + R ++ E+ R++++ + V
Sbjct: 6 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM------LTEEKIELQLGVNHMGH 254
D+ + + K+++L+NNAG + + E + L +N
Sbjct: 66 DVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSV 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH-KRGTINKEDLNSEN 313
LT + L + I+N+SS+A
Sbjct: 126 IALTKKAVPHLSST-------------------KGEIVNISSIASGLHA----------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P Y+ +K A +TR A L GI VN++ PG+V T
Sbjct: 156 --TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS 201
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-35
Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTGA+ GIG AIAR+L A+V++ RD++K +E + + CD
Sbjct: 29 GQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE--IVAAGGEAESHACD 86
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
L+ ++I AFA V + + +VL+NNAGV L K + VN +LL
Sbjct: 87 LSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLL 146
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+A + IIN+SS+A K
Sbjct: 147 -------RAFAP-----------AMIAAKRGHIINISSLAGKNPV-------------AD 175
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
A Y SK A+ L + V+ V PG V T+ S
Sbjct: 176 GAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS 221
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-35
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ ++TGA +G G+ +A+ AK AKV++ RD E+ E+ L D
Sbjct: 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAAD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQLGVNHMGHFLLT 258
++ + + A E + K+++L+NNAG+ + ++ E+ + +GVN G +L+T
Sbjct: 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMT 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L+ + N ++ I+NV+S R P
Sbjct: 124 SKLIPHFKENGAK--------------GQECVILNVASTGAGRP-------------RPN 156
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A YN +K V T+ LA L I V A++P T +L
Sbjct: 157 LAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLT 199
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-35
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG+A A L + AKV + +L+ + + + + + + L +CD
Sbjct: 7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+A Q+ +R +V ++++L+NNAGV+ E+ E L +N + T L
Sbjct: 67 VADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLG 120
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA- 320
LD + IIN+SS+A Q
Sbjct: 121 LDYMSKQNG---------------GEGGIIINMSSLAGLMP-------------VAQQPV 152
Query: 321 YNQSKLANVLFTRE--LAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK V FTR LA L +G+ +NA+ PG VNT IL
Sbjct: 153 YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE 194
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-35
Identities = 57/255 (22%), Positives = 90/255 (35%), Gaps = 42/255 (16%)
Query: 129 LGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVL 188
+ GA+ ++ S + K V+VTG GIG AI E A A + R+ + + +
Sbjct: 1 MAGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK--W 58
Query: 189 ESKNKYVLCRKCDLASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKML---TEEKIE 244
+ K V CD + + + V K+++LINN G K T E
Sbjct: 59 QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFS 117
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+ N + L+ L L+A S II +SS+A
Sbjct: 118 FHISTNLESAYHLSQLAHPLLKA--SGC----------------GNIIFMSSIAGVVSA- 158
Query: 305 NKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LR 360
+ Y+ +K A R LA GI NAV P ++ T + +
Sbjct: 159 ------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY 206
Query: 361 HSSYYDSWLSTVVLK 375
+ +S L
Sbjct: 207 DDEFKKVVISRKPLG 221
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 7e-35
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 37/253 (14%)
Query: 130 GGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE 189
G Y E+ ++ IVTG IG A LA+ A+VI+A D KA ++ L
Sbjct: 1 GSHMYMEKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVED--LR 58
Query: 190 SKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQ 246
+ V D+ + ES++ V ++ ++++L+ AG+ T+ + Q
Sbjct: 59 MEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQ 118
Query: 247 LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINK 306
+ +N G F QA + R E I+ + S++ G I
Sbjct: 119 VDINLNGMFRSC-------QA-VGRI----------MLEQKQGVIVAIGSMS---GLIV- 156
Query: 307 EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--- 363
N AYN SK + R LA GI NAV P + T + R
Sbjct: 157 ------NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKP 210
Query: 364 -YYDSWLSTVVLK 375
YD+W++ +
Sbjct: 211 ELYDAWIAGTPMG 223
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 9e-35
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 35/223 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++V++TG +G+G+A A LA AK+ + + E ++ V+ + + VL D
Sbjct: 13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVAD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ + + A+ + +I+ NNAG+ G + + +N G FL
Sbjct: 73 VSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGL 132
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + +E ++N +SV RG
Sbjct: 133 ------------EKVL------KIMREQGSGMVVNTASVGGIRG-------------IGN 161
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Q Y +K V TR A GI +NA+ PG + T ++
Sbjct: 162 QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVE 204
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-34
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 37/220 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG AI ELA A+V R+ + ++ + K V CD
Sbjct: 21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI--WREKGLNVEGSVCD 78
Query: 202 LASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
L S+ + V K+N+L+NNAGV ++ TE+ + +G N + L+
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L+A S+ +I +SS+A P+
Sbjct: 139 QIAYPLLKA--SQNG----------------NVIFLSSIAGFSAL-------------PS 167
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ Y+ SK A T+ LA I VN+V PG++ T
Sbjct: 168 VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTP 207
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-34
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +VT ++G+G A A ELA+ A++++ R+ +K E A + V
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
D+ I E+ ++ ++L+ + G G L E + + +
Sbjct: 66 DIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+++ + R++ + SV R
Sbjct: 125 RRAAEQMVEK--GW----------------GRMVYIGSVTLLRPW-------------QD 153
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
A N +L + R LA L G+TVNAV P ++ TD +R
Sbjct: 154 LALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRS 197
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-34
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 51/230 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA IG A A LA+ + + + + EKA + K CD
Sbjct: 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS--VREKGVEARSYVCD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
+ S+E++ + V ++ KI+ L NNAG G + + + L +N G F +
Sbjct: 65 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNS 311
+ + RI+N +S+A +G
Sbjct: 125 -------------------------KAVSRQMITQNYGRIVNTASMAGVKG--------- 150
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P A Y SK A + T A L I VNA+ PG + +
Sbjct: 151 ----PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMW 196
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-34
Identities = 58/226 (25%), Positives = 87/226 (38%), Gaps = 51/226 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA GIGKAIA L K V +A + + E + + + K D+
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE--INQAGGHAVAVKVDV 60
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTML 260
+ ++ + A E+ +K +V++NNAGV+ + T E ++ +N G
Sbjct: 61 SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGI-- 118
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNSE 312
Q + + +IIN S A G
Sbjct: 119 -----------------------QAAVEAFKKEGHGGKIINACSQAGHVGN--------- 146
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P A Y+ SK A T+ A+ L GITVN PGIV T
Sbjct: 147 ----PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP 188
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 3e-34
Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 47/224 (20%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S +VTG + GIGKA+ L + K ++ +D + E + K++
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTVIN---IDIQQSFSAENL-----KFI--- 49
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
K DL Q+ I + +K N + + NAG+ + E I+ L +N
Sbjct: 50 KADLTKQQDITNVLDIIK--NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIY 107
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L + L+ + I+ S N
Sbjct: 108 FIKGLENNLKVG--------------------ASIVFNGSDQCFIAKPNSF--------- 138
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A T+ LA L I VN V PG V+TD+ R
Sbjct: 139 ---AYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR 179
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 44/270 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI IVTGA +G+G+A+A LA V +A R LD ++ E+ + LC D
Sbjct: 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDD-----ALCVPTD 82
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
+ +S+RA ++ +++VL NNAG + + + N G FL T
Sbjct: 83 VTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCT 142
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ + + QE RIIN S++ P
Sbjct: 143 ------------QEAFRVMK----AQEPRGGRIINNGSISATSP-------------RPY 173
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSWLSTVVLKP 376
A Y +K A T+ + I + G +T + + + ++ ++P
Sbjct: 174 SAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEP 233
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
++ A +VY + P NV
Sbjct: 234 VM-----DVAHVASAVVYMASLPLDANVQF 258
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 62/242 (25%), Positives = 91/242 (37%), Gaps = 54/242 (22%)
Query: 131 GAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES 190
G+ G+ IVTG + GIG AIAR L K A V +A D+ + LE+
Sbjct: 1 GSHMAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAG--LEN 58
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLG 248
+ D+ + S+ A ++ ++L NAGVS R + T+E+ +
Sbjct: 59 G---GFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFD 115
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHK 300
VN G FL Q + I+N +S+A K
Sbjct: 116 VNARGVFLAN-------------------------QIACRHFLASNTKGVIVNTASLAAK 150
Query: 301 RGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359
G P A Y+ SK A +T+ LA+ + I VN V PG V T +
Sbjct: 151 VGA-------------PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQ 197
Query: 360 RH 361
Sbjct: 198 ER 199
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-34
Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 50/231 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA GIG IAR A A+++++ RD+ + + AR+ + E V D
Sbjct: 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALG-EQFGTDVHTVAID 78
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
LA ++ A + ++VL+NNAG+S + ++ + + + VN LL
Sbjct: 79 LAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLA- 137
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
+ II V+S A
Sbjct: 138 ------------------------SAVGKAMVAAGEGGAIITVASAAALAPL-------- 165
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
P Y SK V+ T+ LA+ L GI N+V P +V T++ +
Sbjct: 166 -----PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQR 211
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 4e-34
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
K+ +VTG GIG+ I+ +LA + +A DL + E+ E + +E+ ++ +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVA--DLPQQEEQAAETIKLIEAADQKAVFVG 59
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D+ + + + +E ++ +VL+NNAG++ + +L TEE ++ VN F
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYD 316
QA SR F E +IIN +S+A +G
Sbjct: 120 I-------QA-ASRK----------FDELGVKGKIINAASIAAIQGF------------- 148
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P + Y+ +K A T+ A+ L G TVNA PGIV T
Sbjct: 149 PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTG 190
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 4e-34
Identities = 61/279 (21%), Positives = 108/279 (38%), Gaps = 45/279 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
G++ +VTGA+ GIG+ IA +L K A V + R LD +E +S + C
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVVC 61
Query: 201 DLASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKMLT---------EEKIELQLGVN 250
D + + +R+ E+V +E + +++VL+NNA + T + V
Sbjct: 62 DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVG 121
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
GH+ ++ + I+ +SS +
Sbjct: 122 LRGHYFCSVYGARLMVPAGQ------------------GLIVVISSPGSLQ--------- 154
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370
Y Y K A + A L G++ ++ PGIV T++L+ + L
Sbjct: 155 ----YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQ 210
Query: 371 TVVLKPLVWLFIK--SPRQGAQTIVYASLDPSLENVSGK 407
VLK F + + +V + DP++ ++SGK
Sbjct: 211 DPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGK 249
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-34
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 35/221 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ IVTGA GIG+AIA AK A V++ + E + + +C+
Sbjct: 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA--IRQAGGKAIGLECN 69
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTML 260
+ ++ A + + KI VL+NNAG G + + E +N F L+ L
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQL 129
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+Q I+N+SS+A + A
Sbjct: 130 AAPHMQKA--GG----------------GAILNISSMAGENTN-------------VRMA 158
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK A TR +A + GI VNA+ PG + TD L
Sbjct: 159 SYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALA 199
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 6e-34
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 54/231 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ IVTG+ GIG+A A LA+ A V++A + + E K+ + + + D
Sbjct: 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ--IVADGGTAISVAVD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGHFL 256
++ ES +A A+ E I+ L+NNA + G K+ + E + + VN G
Sbjct: 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDL 309
T + I+N SS A +
Sbjct: 127 CT-------------------------RAVYKKMTKRGGGAIVNQSSTAAWLYSNY---- 157
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K+ T++L++ L G I +NA+ PG ++T+ R
Sbjct: 158 -----------YGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANR 197
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 7e-34
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKC 200
K +VTG++ G+GKA A LA+ +++ R + +E +E VL K
Sbjct: 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEE--IEKLGVKVLVVKA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
++ I+ +++ + +++V +NNA R ++ E + + +N
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
Q +++ I+++SS+ R
Sbjct: 122 -------QEAAKL-----------MEKNGGGHIVSISSLGSIRYL-------------EN 150
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
SK A TR LA L I VNAV G ++TD L+H
Sbjct: 151 YTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKH 194
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 50/231 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
+ +VTG +GIGK +A L A V++ R+ DK A +E+ L + +
Sbjct: 11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPT 70
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
D+ +++ + V + +++ +++ AG S +T+ E + +N G +
Sbjct: 71 DITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYV 130
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLN 310
+ +A + +SS+A
Sbjct: 131 L-------------------------KHAAREMVRGGGGSFVGISSIAASNT-------- 157
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + A L + + VN++ PG++ TD++
Sbjct: 158 -----HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVA 203
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-33
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 54/227 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TG+ GIG+A A + A V +A D+++ +A E + V + D
Sbjct: 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE--IGPAAYAV---QMD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ Q+SI A + +++L+NNA + ++ T E E +N G
Sbjct: 63 VTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTL- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
Q +A +IIN++S A +RG
Sbjct: 122 ------------------------QAAARQMIAQGRGGKIINMASQAGRRGE-------- 149
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y +K A + T+ L I VNA+ PG+V+ +
Sbjct: 150 -----ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGE 191
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-33
Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 37/220 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG I ELA A V R+ + + SK V CD
Sbjct: 9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ--WRSKGFKVEASVCD 66
Query: 202 LASQESIRAFAEEVKKENK-KINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
L+S+ + V K+N+L+NNAG+ ++ T E L + +N + L+
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 126
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L L+A S ++ +SSV+ P
Sbjct: 127 VLAHPFLKA--SERG----------------NVVFISSVSGALA-------------VPY 155
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+A Y +K A TR LA I VN V PG++ T
Sbjct: 156 EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 195
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 57/228 (25%), Positives = 83/228 (36%), Gaps = 52/228 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
+ ++V GA IG+A A A+ A V++ E A V +E + L K
Sbjct: 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLT--YNGAAEGAA-TAVAEIEKLGRSALAIK 64
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFL 256
DL + + A + +I+ L++ AG RK + E L VN FL
Sbjct: 65 ADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFL 124
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLNS 311
+ + P I+ SS A + G
Sbjct: 125 TA-------------------------KTALPKMAKGGAIVTFSSQAGRDGGG------- 152
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P Y SK A + FTR LAK + G I VNAV PG+++T
Sbjct: 153 -----PGALAYATSKGAVMTFTRGLAKEV-GPKIRVNAVCPGMISTTF 194
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 38/229 (16%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ R V V GA IG IA++ A V R+ +K E +E+ ++ R
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE--IEAAGGRIVAR 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
D +++ + AF + V I N G + +L T+ + F+
Sbjct: 62 SLDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ + +I + A RG
Sbjct: 121 SG-------RESARL-----------MLAHGQGKIFFTGATASLRGG------------- 149
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITV-NAVHPGIVNTDILRHSS 363
A + +K + +A+ L I V + + V+T +R
Sbjct: 150 SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERR 198
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 49/234 (20%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKN 192
T+ + K++++ G +G A+ A +++ + A ++ LE +
Sbjct: 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTA-NKLKDELEDQG 62
Query: 193 KYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVN 250
V + DL+++E + + +KE K+++ IN G + ++ +E + + +N
Sbjct: 63 AKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTIN 122
Query: 251 HMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTIN 305
+ + +++A II +++ T
Sbjct: 123 NKVAYFFI-------------------------KQAAKHMNPNGHIITIATSLLAAYT-- 155
Query: 306 KEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ Y +K +TR +K L I+VNA+ PG ++T
Sbjct: 156 -----------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF 198
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 40/248 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTG+ GIG A+A L + AKV++ K ++VV +++ + K
Sbjct: 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA---NSTKDAEKVVSEIKALGSDAIAIK 74
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D+ I ++ +++ ++N+GV + +TEE+ + +N G F +
Sbjct: 75 ADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFV 134
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ E RI+ SS K ++ P
Sbjct: 135 A-------REAYRH-----------LTEG--GRIVLTSSNTSKDFSV------------P 162
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
+ Y+ SK A F R +K ITVNAV PG TD+ S++ T
Sbjct: 163 KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAE 222
Query: 377 LVWLFIKS 384
Sbjct: 223 QRQQMAAH 230
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-33
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 36/227 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TGA+ GIG+AIAR LA+ + + R +D+ EK E++ E + V D
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE-VFYHHLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ ES+ F+++V + ++V++ NAG+ +++ L+EE+ + VN +G +
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLK 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LD L+ ++ S V+ +
Sbjct: 121 AFLDSLKRTGGLA------------------LVTTSDVSAR-------------LIPYGG 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y +K A R ++E + + PG V+T
Sbjct: 150 GYVSTKWAARALVRTF--QIENPDVRFFELRPGAVDTYFGGSKPGKP 194
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-33
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 40/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTGA GIG+ +A EL +R KVI+ ++ +EVV ++ C K
Sbjct: 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYA---NSTESAEEVVAAIKKNGSDAACVK 85
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
++ E I EE K K++++ +N+GV + +T E+ + +N G F +
Sbjct: 86 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + R+I + S+ + + P
Sbjct: 146 A-------REAYKH-----------LEIG--GRLILMGSITGQAKAV------------P 173
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y+ SK A F R +A + ITVN V PG + TD
Sbjct: 174 KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD 214
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 31/240 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K +IVTG N GIG A R +A A V + R + ++V + +CD
Sbjct: 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKAYQCD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+++ + + +++ + I+ LI NAGVS + T E VN G F
Sbjct: 73 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTC- 131
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYDPT 318
+A +++ ++ + I+ SS++ I + + + T
Sbjct: 132 ------RA-VAK----------LWLQKQQKGSIVVTSSMS---SQIINQSSLNGS---LT 168
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
Q YN SK A + LA GI VNA+ PG VNTD H D S + L
Sbjct: 169 QVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLN 228
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 36/226 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVL 196
T + IVTG GIG IAR LA + + D + E L V+
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAE--LSGLGARVI 82
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRK----MLTEEKIELQLGVNHM 252
+ DLA S +A + V E +I+ L+NNAG++ + L E + +GVN
Sbjct: 83 FLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLR 142
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
G T +L + A+ +R S IIN++SV+
Sbjct: 143 GTVFFTQAVLKAMLASDARAS---------------RSIINITSVSAVMT---------- 177
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P + Y SK F++ LA RL TGI V V PGI+ +D
Sbjct: 178 ---SPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSD 220
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 3e-33
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK +VTG+ GIGKAIA L A V++ R + + KE+ + + +
Sbjct: 9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVA 68
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL +++ + E+ K+++LINN G+ + +E VN M LT
Sbjct: 69 DLGTEQGCQDVIEKY----PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLT 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L K+ + R+I ++S A
Sbjct: 125 RSYLKKMIER--KE----------------GRVIFIASEAAIMP-------------SQE 153
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y+ +K + +R LA+ GT +TVN + PG T+
Sbjct: 154 MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE 193
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-33
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA++G G AIA R +V + E+ + +K VL + D
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADK-VLRVRAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGVNHMGHFL 256
+A + + A ++ I+VL+NNAG++G + E+ + + VN G FL
Sbjct: 61 VADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
R L I+N++SVA
Sbjct: 121 GC------------RAVL------PHMLLQGAGVIVNIASVASLVA-------------F 149
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P + AY SK A + T+ +A G+GI NAV PG++ T + +
Sbjct: 150 PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQ 194
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 4e-33
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 34/238 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA+TGIGK +A A+ A+V +A R D + E + L +CD
Sbjct: 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE--IAGVGGKALPIRCD 89
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + +R +++ E I++ + NAG+ + ML E+ + N G FL
Sbjct: 90 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTA- 148
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKEDLNSENSYDPT 318
QA +R + II +S++ G I N
Sbjct: 149 ------QA-AAR----------AMVDQGLGGTIITTASMS---GHII-------NIPQQV 181
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSWLSTVVLK 375
Y SK A V T+ +A L I VN+V PG + T+++ + Y+ W + L
Sbjct: 182 SHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPKIPLG 239
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-33
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TG GIG+AIA A A + +A DL +A + + + VL KCD
Sbjct: 7 DKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAA--IRNLGRRVLTVKCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ + AF ++V + ++L+NNAG+ T E+ + +N FL+
Sbjct: 63 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA- 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ P RIIN++S +
Sbjct: 122 ------------------------KAFVPGMKRNGWGRIINLTSTTYWLKI--------- 148
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K AN+ FTR LA L GITVNA+ P +V T
Sbjct: 149 ----EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTE 193
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-33
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 40/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ + TGA GIG+ IA EL +R A V++ KA +EVV L+ + +
Sbjct: 21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYG---SSSKAAEEVVAELKKLGAQGVAIQ 77
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D++ + A ++ ++ +++N+G+ +T+E + +N G F +
Sbjct: 78 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 137
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
Q L + RII SS+A + + P
Sbjct: 138 A-------QQGLKH-----------CRRG--GRIILTSSIA------------AVMTGIP 165
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
A Y SK A F R A G+TVN + PG V TD
Sbjct: 166 NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTD 206
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-33
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 35/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+VIVTGA +GIG+AIA++ A + V+ D+ + +E L K VL K D
Sbjct: 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE--LRGMGKEVLGVKAD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ ++ + F + +I+VL NNAG+ + E EL L VN F +
Sbjct: 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSS 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
R + + + I+N +S+A RG
Sbjct: 125 ------------RAVI------PIMLKQGKGVIVNTASIAGIRGGFA------------G 154
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K + TR +A GI AV PG V T+I
Sbjct: 155 APYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGL 196
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-33
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 32/221 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K ++TG+ +GIG AIAR LAK A +++ + + V + VL D
Sbjct: 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPAD 84
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ I V ++L+NNAGV K+ E+ + + VN F
Sbjct: 85 MTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIR 144
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ + RIIN++S + K
Sbjct: 145 GAIPPMKKK--GW----------------GRIINIASAHGLVASPFKS------------ 174
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K + T+ +A + +G+TVN++ PG V T ++
Sbjct: 175 AYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVE 215
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-33
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 36/240 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TG GIG AIA + + AKV++ R D EKA K V + ++ + D
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFF---QHD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++ + +K ++ L+NNAG++ + + T + L VN G F T
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + +++ + IIN+SS+ G +
Sbjct: 123 LGIQRMKNK-----------------GLGASIINMSSIEGFVGDPS------------LG 153
Query: 320 AYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377
AYN SK A + ++ A + + VN VHPG + T ++ + +S P+
Sbjct: 154 AYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPM 213
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-33
Identities = 57/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V++TG++TG+GK++A A KAKV++ R D+ +E+ + + K
Sbjct: 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI--KKVGGEAIAVKG 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D+ + + + KE K++V+INNAG+ + + N G FL +
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
R ++ + + +IN+SSV K P
Sbjct: 125 ------------REAIKYFV-----ENDIKGTVINMSSVHEKIPW-------------PL 154
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK L T LA GI VN + PG +NT I
Sbjct: 155 FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA 197
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 9e-33
Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 41/236 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+++TGA+ +G A L + +VI++ R V E + + D
Sbjct: 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRT-------EHASVTELRQAGAVALYGD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML-TEEKIELQLGVNHMGHFLLTML 260
+ + I AF + +K + + +++NA + V+ + +L+
Sbjct: 80 FSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLIN-- 137
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
S + I+++S ++G+
Sbjct: 138 -----LH-CEPL----------LTASEVADIVHISDDVTRKGS-------------SKHI 168
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375
Y +K T A R + VN + P ++ ++Y + L+ L
Sbjct: 169 AYCATKAGLESLTLSFAARF-APLVKVNGIAPALLMFQPKDDAAYRANALAKSALG 223
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 9e-33
Identities = 64/277 (23%), Positives = 101/277 (36%), Gaps = 40/277 (14%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
+ S G+I +VTG TG+G+ IA+ L+ V++ R D + A E+ + N
Sbjct: 26 QGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNI- 84
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNH 251
V CD+ + + A V+ E ++++L+NNAG + L E E + N
Sbjct: 85 VRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANL 144
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G FL T ++A R RIIN S++ +
Sbjct: 145 TGAFLCTQHAFRMMKAQTPRG----------------GRIINNGSISAQTP--------- 179
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW-L 369
P A Y +K A T+ A I + G TD+ S
Sbjct: 180 ----RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVLQAN 235
Query: 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
V +P + A+ +VY + P NV
Sbjct: 236 GEVAAEPTI-----PIEHIAEAVVYMASLPLSANVLT 267
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-32
Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 40/226 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK V++TG++ GIG A AR A+ AKV + R E + + +
Sbjct: 7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRKA---PANIDETIASMRADGGDAAFFA 63
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFL 256
DLA+ E+ + +E + I+VLINNAG RK L + + + N +
Sbjct: 64 ADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVM 123
Query: 257 LT---MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
T + L + S +I+ S+A G
Sbjct: 124 TTKFALPHLAAAAKASGQT----------------SAVISTGSIAGHTG-------GG-- 158
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P Y +K + G+ N V PG V+T
Sbjct: 159 ---PGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAF 201
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-32
Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 41/229 (17%)
Query: 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESK 191
Y + K+ IVTGA+ GIG AIA LA V++ A +EV +E+
Sbjct: 19 YFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYA---GKAAAAEEVAGKIEAA 75
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGV 249
L + D++ ++R ++ ++VL+NNAG+ + + + + V
Sbjct: 76 GGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAV 135
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G F + R + RIIN+S+
Sbjct: 136 NLKGTFNTL-------REAAQR-----------LRVG--GRIINMSTSQVGLLH------ 169
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P+ Y +K T L+K L G ITVNAV PG TD
Sbjct: 170 -------PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATD 211
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-32
Identities = 60/223 (26%), Positives = 86/223 (38%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ VTG ++GIG A+AR LA R V RD A L + V CD
Sbjct: 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG--LRAAGHDVDGSSCD 81
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
+ S + + A + I +L+N+AG +G + + L N G F +T
Sbjct: 82 VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADL-DDALWADVLDTNLTGVFRVT 140
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L + + RI+N++S K+G
Sbjct: 141 REVLRAGGMREAGW----------------GRIVNIASTGGKQGV-------------MY 171
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y SK V FT+ + L TGITVNAV PG V T +
Sbjct: 172 AAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAE 214
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 37/240 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ VTG++ GIG A+A A+ A V + EKA ++ + KC+
Sbjct: 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL--QKTYGVHSKAYKCN 91
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLL 257
++ +S+ + +K+ I+V + NAGV+ + + + + V+ G +
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ + + +F+++ +I SS++ G I N
Sbjct: 152 S-------HN-IGK----------IFKKNGKGSLIITSSIS---GKIV-------NIPQL 183
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
YN +K A + LA VN + PG ++TDI +S W L
Sbjct: 184 QAPYNTAKAACTHLAKSLAIEW-APFARVNTISPGYIDTDITDFASKDMKAKWWQLTPLG 242
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 36/236 (15%)
Query: 129 LGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVV 187
LG ++ + +V+VTG + GIG A+ R A++ +V + + + + +
Sbjct: 13 LGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI- 71
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIE 244
+ D+ + I A V ++ +++ L+NNAG+ + + + E+IE
Sbjct: 72 -TESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIE 130
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
L VN G L + R S I+NVSS+A G+
Sbjct: 131 RMLRVNVTGSILCA-------AEAVRRMSRLY--------SGQGGAIVNVSSMAAILGS- 174
Query: 305 NKEDLNSENSYDPTQA--YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
TQ Y SK A FT LA+ + GI VNAV PGI+ TD+
Sbjct: 175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDL 218
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-32
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K+VI+TG ++G+GK +A AK A+V++ R +K E+A+ E +E +L +
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLE--IEQFPGQILTVQM 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHFLLT 258
D+ + + I+ E++ ++ +I++LINNA + C L+ + + G F +
Sbjct: 63 DVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCS 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
QA + +Y + ++ IIN+ + P
Sbjct: 123 -------QA-IGKYWI---------EKGIKGNIINMVATYAWDAG-------------PG 152
Query: 319 QA-YNQSKLANVLFTRELAKRL-EGTGITVNAVHPGIVNTDI 358
+K + T+ LA GI VNA+ PG +
Sbjct: 153 VIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTG 194
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-32
Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ ++TG +G+G+A+ A+V + + ++ + + D
Sbjct: 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQ----LGVNHMGH 254
+ S + + AE KI+ LI NAG+ L E+KI+ VN G+
Sbjct: 60 VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
L L ++ ++ S A
Sbjct: 120 IHAVKACLPALVSS-------------------RGSVVFTISNAGFYPN----------- 149
Query: 315 YDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y +K A V R++A L + VN V PG +NTD+ SS
Sbjct: 150 --GGGPLYTATKHAVVGLVRQMAFEL-APHVRVNGVAPGGMNTDLRGPSS 196
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-32
Identities = 51/241 (21%), Positives = 87/241 (36%), Gaps = 52/241 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTG+ G+G A A LA A+VI+ ++ L K D
Sbjct: 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT--LTRKGYDAHGVAFD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + +I A ++ E +++LINNAG+ + M+ E + + N FL++
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVS- 125
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
+ +A +IIN+ S+ +
Sbjct: 126 ------------------------RSAAKRMIARNSGGKIINIGSLTSQAARPT------ 155
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI---LRHSSYYDSW 368
Y +K + T +A I NA+ PG + TD+ L +DSW
Sbjct: 156 ------VAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSW 209
Query: 369 L 369
+
Sbjct: 210 V 210
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 54/222 (24%), Positives = 81/222 (36%), Gaps = 47/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG A+ L A+V +A R + L D
Sbjct: 28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-------------LHLPGD 74
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L V ++++++NNAGV ++ T+ L LGVN F +
Sbjct: 75 LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRIC- 133
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
R ++ + + I+NV+S R P
Sbjct: 134 -----------RAAIPLMA------AAGGGAIVNVASCWGLRP-------------GPGH 163
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y +K A T+ + GI +NAV P VNT +LR
Sbjct: 164 ALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLR 205
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-32
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK VI+TG G+G AR+ A+V++A ++ +E L +Y D
Sbjct: 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE--LGDAARYQ---HLD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +E + ++E ++ L+NNAG+S + + E+ + +N G F+
Sbjct: 60 VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM- 118
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + ++ I+N+SS A G T
Sbjct: 119 -----------KTVIPAMK------DAGGGSIVNISSAAGLMGLAL------------TS 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+Y SK ++ A L I VN+VHPG+ T +
Sbjct: 150 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE 191
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 5e-32
Identities = 57/222 (25%), Positives = 83/222 (37%), Gaps = 42/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V+VTG GIG+AIA+ A+ A V + + KEV + + D
Sbjct: 6 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVAEAIGGAFF---QVD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L + F EE +++VL+NNA ++ L + L VN L+
Sbjct: 58 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS- 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ I+NV+SV +
Sbjct: 117 -----------ALAA------REMRKVGGGAIVNVASVQGLFA-------------EQEN 146
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AYN SK V TR LA L I VNAV PG + T+ +
Sbjct: 147 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVL 188
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 5e-32
Identities = 64/223 (28%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ +VTGA +GIG IAR L K +V + R + KE L R CD
Sbjct: 22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
+ S I A V + ++VL+NNAG G ++ +E + N G F +T
Sbjct: 80 VRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL-ADELWLDVVETNLTGVFRVT 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L RI+N++S K+G
Sbjct: 139 KQVLKAGGMLERGT----------------GRIVNIASTGGKQG-------------VVH 169
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y+ SK V FT+ L L TGITVNAV PG V T +
Sbjct: 170 AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA 212
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 5e-32
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 35/223 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ ++TGA +GIG+A A LA V R + E+ E + + + D
Sbjct: 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADE--IVGAGGQAIALEAD 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
++ + +R ++ + +++++ NAG++G + + K + VN G FL
Sbjct: 86 VSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTL 145
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ L + I+ VSS+ R P
Sbjct: 146 ------------HLTVPYLK------QRGGGAIVVVSSINGTRTFTT-----------PG 176
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K A V ++LA L I VNAV PG + T+I
Sbjct: 177 ATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISD 219
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-32
Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKC 200
+I++VTGA+ GIG+ A A+ A VI+ R+ +K + + E+ +
Sbjct: 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDL 71
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLL 257
+ E+ + A+ + +++ +++NAG+ G ++E+ ++ + VN F+L
Sbjct: 72 LTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFML 131
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T LL L ++ ++ SS ++G
Sbjct: 132 TQALLPLLLK----------------SDAG--SLVFTSSSVGRQGR-------------A 160
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + LA + VN ++PG T +
Sbjct: 161 NWGAYAASKFATEGMMQVLADEY-QQRLRVNCINPGGTRTAMRA 203
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-32
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 40/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+VTG GIG I R A+V++ D D E + + E + CD
Sbjct: 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVIC--DKD--ESGGRALEQELPG--AVFILCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
+ ++ ++ E + +++ ++NNAG + + + L +N +G + LT
Sbjct: 63 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L L+ + +IN+SS+ G
Sbjct: 123 KLALPYLRKS-------------------QGNVINISSLVGAIGQAQ------------A 151
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K A T+ LA G+ VN + PG + T +
Sbjct: 152 VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE 194
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 7e-32
Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 33/235 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
K+V+VTG G G++ A +LA+ A +I+ C D++ + +E +E
Sbjct: 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT 69
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
+ + D+ + ++ E K++V++ NAG+ L + V+
Sbjct: 70 GRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDF 129
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+G L L + + II SVA + +
Sbjct: 130 VGVINTVHAALPYLTSG--------------------ASIITTGSVAGLIA--AAQPPGA 167
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
P A Y+ +K +T +LA +L I N +HP VNTD+L + Y
Sbjct: 168 GGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMY 222
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-32
Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY 194
S K ++V G + +G + + + I D + A
Sbjct: 15 VPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISI--DFRENPNADHSF-------- 64
Query: 195 VLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNH 251
+ +E I++ E++ ++ K++ + AG ++ + ++ + +N
Sbjct: 65 ----TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F + L + + A T
Sbjct: 121 YSAFASAHIGAKLLNQG--------------------GLFVLTGASAALNRTSG------ 154
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
AY +K A ++LA G G T + P ++T R
Sbjct: 155 ------MIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR 199
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 8e-32
Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 38/222 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK+ +TG TG+GK + L+ A+ ++A R +D + +++ ++ NK V +C
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK-VHAIQC 83
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFL 256
D+ + ++ E+ K N++INNA G + L+ + + G
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAA--GNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T + + + + + ++++++ + G+
Sbjct: 142 VT-------LE-IGKQLI---------KAQKGAAFLSITTIYAETGS------------- 171
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+K ++ LA G+ N + PG + T
Sbjct: 172 GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTK 213
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 8e-32
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 125 RGDVLGGAKYTEETSAR--GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182
V G + S ++ IVTG +GIG+A A AK A V++A + D +
Sbjct: 8 SSGVDLGTENLYFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRV 67
Query: 183 RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TE 240
E+ + D++S + + E+ + +++VL+NNAG ++ E
Sbjct: 68 ANEI-----GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPE 122
Query: 241 EKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300
E + + VN G FL + +Y + V + + IIN +S
Sbjct: 123 ETWDRIMSVNVKGIFLCS------------KYVI------PVMRRNGGGSIINTTSYTAT 164
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
++ AY SK A TR +A GI VNAV PG +++
Sbjct: 165 SAIADRT------------AYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFT 212
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 9e-32
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 45/222 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ IVTG ++GIG A+ L + AKV+ D K D
Sbjct: 14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF------------KID 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++E ++ E+ K+ +I++L+NNAG+ + E + VN G +L+
Sbjct: 62 VTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMA- 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+Y++ V IIN++SV T N
Sbjct: 121 -----------KYTI------PVMLAIGHGSIINIASVQSYAATKNAA------------ 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK A + TR +A I NAV PG + T ++
Sbjct: 152 AYVTSKHALLGLTRSVAIDY-APKIRCNAVCPGTIMTPMVIK 192
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 9e-32
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 41/224 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ I+TGA GIG +R LA+ A+V++A A V + D
Sbjct: 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRG-----AVHHVVD 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L ++ S+RA + +++++ NNA S ML T + + VN G L+
Sbjct: 66 LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+Y++ LI + I+N+SS
Sbjct: 126 C------------KYAIPRLI------SAGGGAIVNISSATAHAA-------------YD 154
Query: 318 TQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K A TR +A + G+ NA+ PG+V T L
Sbjct: 155 MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLE 198
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTG+ +GIG IA LA + A +++ D + EK R + + K VL
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK-VLYDGA 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL+ E++R + ++ +I++L+NNAG+ + EK + L +N F T
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++ + RIIN++S + NK
Sbjct: 123 AAALPHMKKQ--GF----------------GRIINIASAHGLVASANK------------ 152
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K V FT+ A G GIT NA+ PG V T ++
Sbjct: 153 SAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVE 194
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 48/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+VIVTGA+ GIG+AIA +KVI + +A+ + + +CD
Sbjct: 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDL--SIHDPGEAKYDHI-----------ECD 54
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ + + ++A + + KE I+VL+NNAG+ K+ + + + VN G++ +
Sbjct: 55 VTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYAS- 113
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++++ S I+N+SSV
Sbjct: 114 -----------KFAI------PYMIRSRDPSIVNISSVQASII-------------TKNA 143
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + T+ +A + NAV P ++T ++R
Sbjct: 144 SAYVTSKHAVIGLTKSIALDY-APLLRCNAVCPATIDTPLVR 184
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 1e-31
Identities = 56/268 (20%), Positives = 91/268 (33%), Gaps = 55/268 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK-------VIMACRDLDKCEKARKEVVLESKNKYV 195
I+++TGA GIG+AIA E A+ ++++ R EK E ++
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE--CRAEGALT 60
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMG 253
D++ +R + + I+ L+NNAGV + LTEE + + N G
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKG 120
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F LT L ++ Q S I ++SVA +
Sbjct: 121 TFFLTQALFALMER----------------QHSG--HIFFITSVAATKAF---------- 152
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372
+ Y SK + + + V PG V T +
Sbjct: 153 ---RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK----------- 198
Query: 373 VLKPLVWLFIKSPRQGAQTIVYASLDPS 400
+ + + P A +V A L PS
Sbjct: 199 -VDDEMQALMMMPEDIAAPVVQAYLQPS 225
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 142 GKIVIVTGA-NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+V+VT A TGIG AR A V+++ + + R ++ + V C
Sbjct: 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGR-VEAVVC 80
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLL 257
D+ S E++ A + ++ +++VL+NNAG+ G M T+E+ + L V
Sbjct: 81 DVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDM-TDEEWDRVLNVTLTSVMRA 139
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T L + + I+N +SV R
Sbjct: 140 TRAALRYFRGV--DHG---------------GVIVNNASVLGWRA-------------QH 169
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+Q+ Y +K + TR A G+ +NAV P I L
Sbjct: 170 SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLE 213
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-31
Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +V+G G+G + R + AKV+ ++ + E L +YV D
Sbjct: 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE--LADAARYV---HLD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ +A + ++VL+NNAG+ + + + L VN G FL
Sbjct: 62 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI- 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
R + + E+ IIN+SS+ GT+
Sbjct: 121 -----------RAVVKPMK------EAGRGSIINISSIEGLAGTVA------------CH 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A T+ A L +GI VN++HPG+V T +
Sbjct: 152 GYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD 192
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 49/223 (21%), Positives = 74/223 (33%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI IVTGA++GIG+A A A+ AKV++ R+ + + E + D
Sbjct: 8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDE--IAGGGGEAAALAGD 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL---QLGVNHMGHFLLT 258
+ + A E + ++ NNAG G ++ +E L N FL
Sbjct: 66 VGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAA 125
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+Y + + SS
Sbjct: 126 ------------KYQV------PAIAALGGGSLTFTSSFVGHTAGF------------AG 155
Query: 319 Q-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK + + LA L GI VNA+ PG +T
Sbjct: 156 VAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANF 198
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-31
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 50/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTG + G+G IA+ LA+ V++A R+L++ +A +++ E + +CD
Sbjct: 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRCD 79
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLT 258
+++ E ++ E VK++ K++ ++N AG+ R E ++ + VN G + +
Sbjct: 80 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGI-NRRHPAEEFPLDEFRQVIEVNLFGTYYVC 138
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNS 311
+E+ IIN+ S+ + T+
Sbjct: 139 -------------------------REAFSLLRESDNPSIINIGSLTVEEVTM------- 166
Query: 312 ENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P AY SK T+ LAK GI VN + PG T
Sbjct: 167 -----PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTK 208
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ IVTGA GIG A+AR LA V+ A D D + A ++ + D
Sbjct: 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCG-----AAACRVD 83
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ ++ I A + ++ L+ NAGV ++ T E + + +N G +L T
Sbjct: 84 VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCT- 142
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+++ E I+N+SS+A + T
Sbjct: 143 -----------KHAA------PRMIERGGGAIVNLSSLAGQVAVGG------------TG 173
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK + +R A L +GI N + P V+T + +
Sbjct: 174 AYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQT 215
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-31
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 36/224 (16%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ +GK +VTG+ +GIG IA+ LA+ A +++ A E + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLN--GFGDPAPALAE--IARHGVKAVHH 56
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFL 256
DL+ I A ++E +++L+NNAG+ + E + + +N F
Sbjct: 57 PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
T L L ++A + RIIN++SV G+ K
Sbjct: 117 GTRLALPGMRAR--NW----------------GRIINIASVHGLVGSTGKA--------- 149
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY +K V T+ + + +T NA+ PG V T +++
Sbjct: 150 ---AYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ 190
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 44/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V+VTG GIG+ IA A+ A V +A R + ++ K V+ + D
Sbjct: 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK-VIGVQTD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ + A A +E I+V+ NAGV T E++ VN G F
Sbjct: 69 VSDRAQCDALAGRAVEEFGGIDVVCANAGVF--PDAPLATMTPEQLNGIFAVNVNGTFYA 126
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI--NKEDLNSENSY 315
LD L A S R++ SS+ G I
Sbjct: 127 VQACLDALIA--SGS----------------GRVVLTSSIT---GPITGY---------- 155
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTV 372
P + Y +K A + F R A L ITVNA+ PG + T+ L + Y S ++
Sbjct: 156 -PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSI 214
Query: 373 VLK 375
Sbjct: 215 PAG 217
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 40/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK VTG + GIG AIA+ LA A V + + + VV +E + +
Sbjct: 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAERAQAVVSEIEQAGGRAVAIR 87
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLL 257
D E+I E + +++L+N+AG+ + T + + VN F+
Sbjct: 88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVA 147
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
++ + RII + S + P
Sbjct: 148 I-------RSASRH-----------LGDG--GRIITIGSNLAELVPW------------P 175
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
+ Y+ SK A T+ LA+ L GITVN VHPG +TD+
Sbjct: 176 GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDM 217
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-31
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K++++TGA+ GIG+ IAREL AK+++ R + E E + L + D
Sbjct: 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE--IRDAGGTALAQVLD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ + S+ AFA+ +I+VL+NNAGV + + ++ E + VN G
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+L ++A Q S +IIN+ S+
Sbjct: 122 AVLPIMEA----------------QRSG--QIINIGSIGALS------------VVPTAA 151
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
Y +K A + L R E T I V V+PG+V +++ ++ ++
Sbjct: 152 VYCATKFAVRAISDGL--RQESTNIRVTCVNPGVVESELAGTITHEET 197
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 5e-31
Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTGA GIG+ + L AKV+ R KE + D
Sbjct: 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L ++ + +++L+NNA + + L T+E + VN F ++
Sbjct: 61 LGDWDATEKALGGI----GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ + P I+NVSS+ N
Sbjct: 117 MVARDMINR-----------------GVPGSIVNVSSMVAHVTFPN------------LI 147
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A L I VN+V+P +V TD+ +
Sbjct: 148 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGK 188
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-31
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 47/227 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCRK 199
GK+ +VTGA+ GIG+AIA+ LA A V + ++ +E V ++S
Sbjct: 7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYG---NRKEEAEETVYEIQSNGGSAFSIG 63
Query: 200 CDLASQESIRAFAEEVKKENK------KINVLINNAGVSGCRKM--LTEEKIELQLGVNH 251
+L S + A + E + K ++LINNAG+ + TE+ + + VN
Sbjct: 64 ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 123
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
F + L +L+ N SRIIN+SS A +
Sbjct: 124 KAPFFIIQQALSRLRDN--------------------SRIINISSAATRISL-------- 155
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Y+ +K A T LAK+L GITVNA+ PG V TD
Sbjct: 156 -----PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTD 197
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-31
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 44/223 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++VTGA +GIG+A A+ A ++ R+ +A + E + D
Sbjct: 6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAE-----AIAVVAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLT 258
++ +++ A E +E +++ + + AGV+ + E E L VN G FL+
Sbjct: 61 VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNL-PLEAWEKVLRVNLTGSFLVA 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L+ ++ SVA G
Sbjct: 120 RKAGEVLE----EG----------------GSLVLTGSVA---GLGA-----------FG 145
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A Y KL V R LA L G+ VN + PG++ T +
Sbjct: 146 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA 188
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-31
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 55/226 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V++TGA+ GIG + R R +V+ R + V D
Sbjct: 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTV-----------AGD 76
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
++ E+ E + +I+ L+NNAGV + + T+E + LGVN G F +T
Sbjct: 77 ISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHIT- 135
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q +A I+++++ + +
Sbjct: 136 ------------------------QRAAAEMLKQGSGHIVSITTSLVDQPMVGM------ 165
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
P+ + +K TR LA +G+ VNAV PG++ T +
Sbjct: 166 ----PSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPM 207
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 117 bits (297), Expect = 6e-31
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 57/229 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V+VTGA GIG+ + L A+V+ R + +E + D
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L E+ V +++L+NNA V+ + L T+E + VN ++
Sbjct: 61 LGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVS- 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS--------RIINVSSVAHKRGTINKEDLNS 311
Q A I+NVSS +R N
Sbjct: 116 ------------------------QIVARGLIARGVPGAIVNVSSQCSQRAVTNH----- 146
Query: 312 ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + T+ +A L I VNAV+P +V T + +
Sbjct: 147 -------SVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQ 188
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 7e-31
Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 54/267 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++++TGA++G+G +A+ + R K L + V R DL
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC--LSNN---VGYRARDL 56
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTML 260
AS + + E++ + ++++AG + E+I+ + N +
Sbjct: 57 ASHQEVEQLFEQLD---SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRE 113
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L+ + + P ++ + S A ++ ++
Sbjct: 114 LVKRYKDQ-------------------PVNVVMIMSTAAQQPK-------------AQES 141
Query: 321 -YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
Y K A + L+G + + AV+PG + T+ S L +
Sbjct: 142 TYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG--------KSLDTSSF 193
Query: 380 LFIKSPRQGAQTIVYASLDPSLENVSG 406
+ S A I A + VS
Sbjct: 194 M---SAEDAALMIHGALANIGNGYVSD 217
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 7e-31
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R K+ +TG +GIG IA + ++A R L + A +++ + + L
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRR-CLPLSM 84
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHFLLT 258
D+ + ++ A ++ KE +I++LIN A + C L+ + + ++ G F ++
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 144
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L +K + I+N+++ RG
Sbjct: 145 RVLYEKFFRD------------------HGGVIVNITATLGNRGQ-------------AL 173
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q +K A TR LA I VN++ PG ++
Sbjct: 174 QVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGT 213
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-30
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 44/222 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK++I+T A GIG+A A A+ AKVI D++ E +E+ + R D
Sbjct: 6 GKVIILTAAAQGIGQAAALAFAREGAKVIAT--DIN--ESKLQELEKYPG---IQTRVLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ ++ I FA EV ++++VL N AG +L E+ + + +N +L+
Sbjct: 59 VTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIK 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L K+ A S IIN+SSVA + +
Sbjct: 115 AFLPKMLAQKS------------------GNIINMSSVASSVKGV------------VNR 144
Query: 320 -AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A GI N V PG V+T L+
Sbjct: 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQ 186
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-30
Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 59/231 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
I +VT A G A L + V+ A + ES+N
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASF---ADAAERQRFESENP-----GTIA 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFLL 257
+++ + + + I+ +++N + + +E I + LL
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILL 113
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLN 310
Q + +I ++S K+
Sbjct: 114 L-------------------------QSAIAPLRAAGGASVIFITSSVGKKP-------- 140
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y ++ A V AK L GI + A+ P N
Sbjct: 141 -----LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYF 186
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 57/243 (23%), Positives = 88/243 (36%), Gaps = 44/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG GIG+ IA A+ A V +A R + E+ V+ + D
Sbjct: 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGN-VIGVRLD 99
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ S A V ++V+ NAG+ + T E++ L VN G
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANAGIF--PEARLDTMTPEQLSEVLDVNVKGTVYT 157
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI--NKEDLNSENSY 315
L L A+ R+I SS+ G +
Sbjct: 158 VQACLAPLTAS--GR----------------GRVILTSSIT---GPVTGY---------- 186
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH--SSYYDSWLSTV 372
P + Y SK A + F R A L G+TVNA+ PG + T+ L Y ++
Sbjct: 187 -PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSI 245
Query: 373 VLK 375
+
Sbjct: 246 PMG 248
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 39/262 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R ++ +VTGA+ GIG A+AR L ++ KV+ R + E+ E ++ +C
Sbjct: 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 90
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT--EEKIELQLGVNHMGHFLLT 258
DL+++E I + ++ ++ +++ INNAG++ +L+ + VN + + T
Sbjct: 91 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 150
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA-HKRGTINKEDLNSENSYDP 317
++ + IIN++S++ H+ + +
Sbjct: 151 REAYQSMKE----------------RNVDDGHIININSMSGHR--VLPLSVTH------- 185
Query: 318 TQAYNQSKLANVLFTRELAKRLE----GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373
Y+ +K A T L R E T I + PG+V T D +
Sbjct: 186 --FYSATKYAVTALTEGL--RQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT 241
Query: 374 LKPLVWLFIKSPRQGAQTIVYA 395
+ + L P A+ ++Y
Sbjct: 242 YEQMKCL---KPEDVAEAVIYV 260
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-30
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 49/225 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G VTGA +GIG I R A A++I+ R+ ++A +E+ D
Sbjct: 11 GACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL----GAAVAARIVAD 66
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ E++ A A E + +++L+N+AG++ L + + VN G F +
Sbjct: 67 VTDAEAMTAAAAEAEAVA-PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWAS- 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ + I+N+ S++
Sbjct: 125 ------------------------RAFGRAMVARGAGAIVNLGSMSGTIV---------- 150
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
N +Y SK A TR LA G G+ VNA+ PG V T+
Sbjct: 151 NRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATE 195
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-30
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 49/228 (21%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCR 198
+ + +VTG ++GIG+A A A+ A V + L E+ ++V +E + +
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINY--LPAEEEDAQQVKALIEECGRKAVLL 105
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
DL+ + R+ + ++ +++L AG + T E+ + VN F
Sbjct: 106 PGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALF 165
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-----SRIINVSSVAHKRGTINKEDLN 310
+T QE+ P + II SS+ +
Sbjct: 166 WIT-------------------------QEAIPLLPKGASIITTSSIQAYQP-------- 192
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
S + D Y +K A + ++R LAK++ GI VN V PG + T +
Sbjct: 193 SPHLLD----YAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL 236
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-30
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 40/224 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG +G+G + + L AKV + + ++ E L ++ +V + D
Sbjct: 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE--LGERSMFV---RHD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++S+ V++ +NVL+NNAG+ M E L +N F+
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC- 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + IIN++SV+
Sbjct: 120 -----------QQGIAAMK-------ETGGSIINMASVSSWLPIEQ------------YA 149
Query: 320 AYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRH 361
Y+ SK A TR A +G I VN++HP + T +++
Sbjct: 150 GYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA 193
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-30
Identities = 41/243 (16%), Positives = 72/243 (29%), Gaps = 46/243 (18%)
Query: 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKN 192
T ++ ++TG IG +IA L ++ +V++ R ++ E+
Sbjct: 3 ETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAG 62
Query: 193 KYVLCRKCDLASQESIRAFAE----EVKKENKKINVLINNAGV-------------SGCR 235
+ K DL+ S+ E + + +VL+NNA
Sbjct: 63 S-AVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAAD 121
Query: 236 KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295
+ ++ G N + L + + S ++N+
Sbjct: 122 AKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGA-------------WRSRNLSVVNLC 168
Query: 296 SVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
P Y +K A TR A L I VNAV PG+
Sbjct: 169 DAMTDLPL-------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLS 215
Query: 355 NTD 357
Sbjct: 216 LLP 218
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-30
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLC 197
+G++ IVTG TGIGKAI +EL + + V++A R L++ + A E+ V+
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM-LTEEKIELQLGVNHMGHF 255
+C++ ++E + + KIN L+NN G ++ + L N G F
Sbjct: 77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ +A + + + I+N+ G
Sbjct: 137 YMC-------KA-VYSSWM----------KEHGGSIVNIIVPTK-AGF------------ 165
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P ++ T+ LA +GI +N V PG++ +
Sbjct: 166 -PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQ 207
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 7e-30
Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 44/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
KI +VTGA G+G I ++L++ + R+ + + V + D
Sbjct: 5 KKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIEG-------VEPIESD 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ + +++ K ++ L++ A V+ + + + L +N + L+
Sbjct: 57 IVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSR 115
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LL L+A A +I ++S A P
Sbjct: 116 QLLPALRA-------------------ASGCVIYINSGAGNGPH-------------PGN 143
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y SK A K GI V+ V PG NT +L+
Sbjct: 144 TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLM 188
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
GK + +TGA+ GIG AIA A+ A V +A + K + + L
Sbjct: 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGL 65
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGH 254
KCD+ ++ +RA I++L+NNA R L ++ +L VN G
Sbjct: 66 ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGS 125
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F+ QA L + ++ I+ ++
Sbjct: 126 FVCA-------QACL-PH----------LLQAPNPHILTLAPPPSLNP----------AW 157
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRH 361
+ Y +K+ L T LA G+ +NA+ P ++ TD +
Sbjct: 158 WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINM 205
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-29
Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 38/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
GK + ++G + GIG AIA+ +A A V + + + K +E L
Sbjct: 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQAL 68
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGH 254
D+ +++ A + ++ I++ +NNA + + ++ +L G+ G
Sbjct: 69 PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGT 128
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+ ++ Q+ + + + I+ +S
Sbjct: 129 YAVS-------QSCI-PH----------MKGRDNPHILTLSPPIRLEPKW---------- 160
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K L +A+ L GI N + P
Sbjct: 161 --LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT 202
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-29
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ I+TG GIG+ A+ + AKV++A D +K + +V CD
Sbjct: 16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFV---HCD 72
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGHFLL 257
+ E +R + ++ K++++ N GV E + + +N G FL+
Sbjct: 73 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 132
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+++ V + I+ +S++
Sbjct: 133 A------------KHAAR------VMIPAKKGSIVFTASISSFTAGEG-----------V 163
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y +K A + T L L GI VN V P IV + +L
Sbjct: 164 SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLT 206
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-29
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 59/235 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
I++++G TGIG A + L +++ EV+ DL
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA-------EVI------------ADL 42
Query: 203 ASQESI-RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ E +A A+ + K +K ++ L+ AG+ + + + VN+ G L
Sbjct: 43 STAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAF 97
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ-- 319
L L+ + +SSVA +K L
Sbjct: 98 LPALKK------------------GHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKA 139
Query: 320 --------------AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + R+ A G+ +N + PG T +L+
Sbjct: 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQ 194
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-29
Identities = 50/251 (19%), Positives = 80/251 (31%), Gaps = 44/251 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
+VTGA IG+AIA +L + +V++ + E+ E N + +
Sbjct: 23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNT-AVVCQA 81
Query: 201 DLASQESIRAFAE----EVKKENKKINVLINNAGVS------------GCRKMLTEEKIE 244
DL + + A E + + +VL+NNA E ++
Sbjct: 82 DLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVA 141
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+G N + F L+ S+ I+N+ +
Sbjct: 142 ELIGTNAIAPF------------LLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPC- 188
Query: 305 NKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
+ YN K A V T+ A L GI VN V PG+ +
Sbjct: 189 ------------MAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEE 236
Query: 364 YYDSWLSTVVL 374
D W V L
Sbjct: 237 EKDKWRRKVPL 247
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-29
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 35/240 (14%)
Query: 142 GKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK+V+VTGA+ G+G AR A+ A V + + + + + ++ K
Sbjct: 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYK 79
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
C + S ES ++V + +I+ I NAG + +L + E + V+ G F
Sbjct: 80 CQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHC 139
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+A + F+E ++ +S++ G I N
Sbjct: 140 A-------KA-VGH----------HFKERGTGSLVITASMS---GHIA-------NFPQE 171
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLK 375
+YN +K + R LA VN++ PG ++T + W S + +
Sbjct: 172 QTSYNVAKAGCIHMARSLANEW-RDFARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMG 230
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-29
Identities = 51/222 (22%), Positives = 76/222 (34%), Gaps = 46/222 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V VTGA GIG A A + AKV D ++ D
Sbjct: 7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGF--DQAFTQEQYP----------FATEVMD 54
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+A + + + E ++++ L+N AG+ G L++E + VN G F L
Sbjct: 55 VADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLF- 113
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
Q F+ I+ V+S A
Sbjct: 114 ------QQ-TMNQ----------FRRQRGGAIVTVASDAAHTP-------------RIGM 143
Query: 320 A-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ Y SK A + L G+G+ N V PG +TD+ R
Sbjct: 144 SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQR 185
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-29
Identities = 51/227 (22%), Positives = 79/227 (34%), Gaps = 48/227 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
V++TGA+ GIG+A AR L + +V + RD + + E LE L D
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAE--LEG----ALPLPGD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG-------VNHMGH 254
+ + +++ +++ L+NNAGV + + EL L N G
Sbjct: 59 VREEGDWARAVAAMEEAFGELSALVNNAGV-----GVMKPVHELTLEEWRLVLDTNLTGA 113
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
FL + L I+NV S+A K
Sbjct: 114 FLGIRHAVPALLRRGGGT------------------IVNVGSLAGKNP------------ 143
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+ AYN SK + L + V V PG V+T +
Sbjct: 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN 190
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-29
Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 53/227 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
VIV G +G AI K V+ DL ++A +++ +
Sbjct: 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNI--DLSANDQADSNILV----------DGN 50
Query: 202 LASQESIRAFAEEVKKENK--KINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFL 256
E ++ E+ + +++ + AG ++ + +L + + +
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
L L+ + + A T
Sbjct: 111 AAKLATTHLKPG--------------------GLLQLTGAAAAMGPT------------- 137
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
P+ Y +K A T LA + G V + P ++T + R
Sbjct: 138 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-29
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 47/224 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+V G +G + R V D+ + E+A V+++
Sbjct: 7 ARRVLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEASASVIVK--------MTDS 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
Q ++K++ ++ AG ++ + +L + + +
Sbjct: 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 116
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L+ + + A GT
Sbjct: 117 HLATKHLKEG--------------------GLLTLAGAKAALDGTPG------------M 144
Query: 319 QAYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILR 360
Y +K A + LA + G G AV P ++T + R
Sbjct: 145 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 6e-29
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 44/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK +VTGA GIGKAIA LA A VI++ + + + A + + D
Sbjct: 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKK-----ARAIAAD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFL 256
++ S++A E++ I++L+NNA + + + + VN G F+
Sbjct: 61 ISDPGSVKALFAEIQALTGGIDILVNNASIV--PFVAWDDV-DLDHWRKIIDVNLTGTFI 117
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T +A + R+I+++S GT
Sbjct: 118 VT-------RA-GTDQMRAAGKA---------GRVISIASNTFFAGT------------- 147
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
P A Y +K + FTR LA L IT NAV PG++ +D ++
Sbjct: 148 PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVK 192
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 43/264 (16%), Positives = 80/264 (30%), Gaps = 64/264 (24%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V++TGA G+G A AR L ++++ R + +EV DLA
Sbjct: 3 VLITGATGGLGGAFARALKG--HDLLLSGRRAGALAELAREVG-------ARALPADLAD 53
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTMLLL 262
+ +A EE +++L++ G +G + + +E L + L +L
Sbjct: 54 ELEAKALLEEAGP----LDLLVHAVGKAGRASVREAGRDLVEEMLAAH----LLTAAFVL 105
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-Y 321
+ Q+ A R + + P A Y
Sbjct: 106 KHARF----------------QKGA--RAVFFGAYPRYVQV-------------PGFAAY 134
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
+K A + K L G+ + V V T +
Sbjct: 135 AAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLGGPPKGAL----------- 183
Query: 382 IKSPRQGAQTIVYASLDPSLENVS 405
SP + A+ ++ + +
Sbjct: 184 --SPEEAARKVLEGLFREPVPALL 205
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR---KEVV--LESKNKYVL 196
G V +TGA+ GIGKAIA + AK A +++A + K +E+ L
Sbjct: 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKAL 104
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGH 254
D+ ++ I A E+ K+ I++L+NNA L ++++L + VN G
Sbjct: 105 PCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGT 164
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L + + ++S + I+N+S +
Sbjct: 165 YLASKACIP------------------YLKKSKVAHILNISPPLNLNP----------VW 196
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRH 361
+ AY +K ++ +A+ I VNA+ P ++T +
Sbjct: 197 FKQHCAYTIAKYGMSMYVLGMAEEF-KGEIAVNALWPKTAIHTAAMDM 243
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-29
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA GIG+ IA+ LAK + VI R C+ E ++S D
Sbjct: 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE--IKSFGYESSGYAGD 101
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ +E I ++ E+K +++L+NNAG++ R L ++ E L N F +
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGIT--RDNLFLRMKNDEWEDVLRTNLNSLFYI 159
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ +RY RIIN+SS+ G N
Sbjct: 160 TQPISKRMI---N-----NRY----------------GRIINISSIVGLTG--N------ 187
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y+ SK + FT+ LAK L ITVNA+ PG +++D
Sbjct: 188 -----VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSD 229
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 44/239 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
GK+ +TGA G G++ A LA+ A +I C+ LD E V +E+
Sbjct: 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL 87
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLG 248
+ ++ + D+ ++++A ++ + ++++++ NA ++ L + +
Sbjct: 88 GRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMID 147
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VN G ++ + + + A + I+ SS+ RG
Sbjct: 148 VNLNGAWITARVAIPHIMAG---------------KRGG--SIVFTSSIGGLRGA----- 185
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y SK R +A L I VN V P V T +L + Y
Sbjct: 186 --------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYR 236
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-28
Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC------EKARKEVV--LESK 191
GK+ +TGA G G+A A LA A +I C + + V +E
Sbjct: 13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI 72
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNH 251
++ R+ D+ +ES+ A + E ++++++ NAG++ ++ + VN
Sbjct: 73 GSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMS--AGDDGWHDVIDVNL 130
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G + + + L + I+ +SS A G +
Sbjct: 131 TGVYHTIKVAIPTLVKQGT-----------------GGSIVLISSSAGLAGVGSA----- 168
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
DP Y +K V R A L G I VN++HP V T ++ + +
Sbjct: 169 ----DPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTRE 220
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTGA +GIG+AIA A+ A V+ R D ++ E+ D
Sbjct: 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI--ADGGGSAEAVVAD 87
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
LA E AEE+ ++++VL+NNAG+ + + L VN ++L+
Sbjct: 88 LADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLS- 145
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
+ + RI+ ++S+ +G N
Sbjct: 146 ------------------------RSFGTAMLAHGSGRIVTIASMLSFQGGRN------- 174
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
AY SK A V TR LA G G+ VNA+ PG V T
Sbjct: 175 -----VAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTA 214
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA+ GIG+AIA ELA+R A VI E + +
Sbjct: 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA--FKQAGLEGRGAVLN 85
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ ++ A E KE +NVL+NNAG++ + L +++ + + N F L
Sbjct: 86 VNDATAVDALVESTLKEFGALNVLVNNAGIT--QDQLAMRMKDDEWDAVIDTNLKAVFRL 143
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K +R RI+N++SV G N
Sbjct: 144 SRAVLRPMM---K-----ARG----------------GRIVNITSVVGSAG--N------ 171
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K TR LA+ + GITVN V PG ++TD
Sbjct: 172 -----PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTD 213
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-28
Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 52/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA+ GIG +A LA + A V+ EK ++ K +
Sbjct: 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS--MKEKGFKARGLVLN 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ ESI+ F E+K EN I++L+NNAG++ R L +E++ + + N F +
Sbjct: 63 ISDIESIQNFFAEIKAENLAIDILVNNAGIT--RDNLMMRMSEDEWQSVINTNLSSIFRM 120
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K R+ RII++ SV G N
Sbjct: 121 SKECVRGMM---K-----KRW----------------GRIISIGSVVGSAG--N------ 148
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K + F++ LA + ITVN V PG + TD
Sbjct: 149 -----PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATD 190
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-28
Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 57/226 (25%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
IVT G A L++ V + ++ +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA--------ETYPQLKP 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLTM 259
S++ E V +++VL++N + + + E + + F L
Sbjct: 54 MSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV- 112
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
A II ++S
Sbjct: 113 ------------------------NAVASQMKKRKSGHIIFITSATPFGP---------- 138
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+ Y ++ L+K L I V A+ P ++++
Sbjct: 139 ---WKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSE 181
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-28
Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 38/228 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G IV+G G+G+A R L V++A +K + E L ++ ++V +
Sbjct: 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE--LGNRAEFV---STN 84
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQL-------GVNHMGH 254
+ S++S+ A E + + ++ + G ++++ + + + G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+ + L+ + A R + ++ +S+A G I
Sbjct: 145 YNVARLVAASIAAAEPR------------ENGERGALVLTASIAGYEGQIG--------- 183
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY +K + T A+ L GI VN + PG + T I+
Sbjct: 184 ----QTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES 227
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 5e-28
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLC 197
++ +GK+ ++TGA++GIG+A AR LA A V +A R ++K E L + V
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDE--LTAAGAKVHV 60
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
+ D+A ++ + A + +++L+NNAG+ + + N +G
Sbjct: 61 LELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLM 120
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T L L + ++ +SS+A + +
Sbjct: 121 YMTRAALPHLLRS-------------------KGTVVQMSSIAGRV------------NV 149
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y +K F+ L + + G+ V + PG +T++ H ++
Sbjct: 150 RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA 200
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-28
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 42/224 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--LESKNKYVLCR 198
+GK V++TG ++GIG+A++ AK A + +A LD+ A E +E + +
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIA--YLDEEGDAN-ETKQYVEKEGVKCVLL 102
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
DL+ ++ + +E ++ +N+L+NN ++ L T E++E +N +F
Sbjct: 103 PGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T L L+ IIN +S+ G
Sbjct: 163 HVTKAALSHLKQG--------------------DVIINTASIVAYEGN------------ 190
Query: 316 DPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
T Y+ +K A V FTR L++ L GI VN V PG + T +
Sbjct: 191 -ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-28
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC-------EKARKEVV--LES 190
G++ +TGA G G++ A LA A +I C + + E +E
Sbjct: 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED 74
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLG 248
+ + L R D+ ++R + ++ +++V++ NAGV ++ LT+E+ + +G
Sbjct: 75 QGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIG 134
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
VN G + + + I+ VSS A + T
Sbjct: 135 VNLTGTWRTLRATVPAMIEA-----------------GNGGSIVVVSSSAGLKAT----- 172
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
P Y+ SK T LA L GI VN++HP V T ++ + +
Sbjct: 173 --------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMME 223
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-28
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 42/237 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKC-------EKARKEVV--LES 190
G++ +TGA G G+A A +A A +I L C E V +E+
Sbjct: 11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA 70
Query: 191 KNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLG 248
N+ ++ D + +R ++ ++++++ NAGV+ + +T E +
Sbjct: 71 ANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMD 130
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
+N G + M ++ II +SS A +
Sbjct: 131 INVTGTWNTVMAGAPRIIEG-----------------GRGGSIILISSAAGMKMQPF--- 170
Query: 309 LNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
Y SK A R A L I VN+VHPG VNT +
Sbjct: 171 ---------MIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVT 218
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 6e-28
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 59/226 (26%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG + GIG+AIA L R +V +A R+ ++ ++ V L DL
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPL----------PTDL 52
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIE---LQLGVNHMGHFLLTM 259
++ + + + ++VL++ A V+ RK E E L ++ FLL
Sbjct: 53 -EKDDPKGLVKRALEALGGLHVLVHAAAVNV-RKPALELSYEEWRRVLYLHLDVAFLLA- 109
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPS-------RIINVSSVAHKRGTINKEDLNSE 312
Q +AP R++ + SV
Sbjct: 110 ------------------------QAAAPHMAEAGWGRVLFIGSVTTFTAGGP------- 138
Query: 313 NSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K A + TR LAK GI VN + PG V T+
Sbjct: 139 ----VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETE 180
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 8e-28
Identities = 56/222 (25%), Positives = 82/222 (36%), Gaps = 48/222 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K V++TGA GIG+A AK A+++ + +A + V D
Sbjct: 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG-------AHPVVMD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFL 256
+A S+ E +++ +++ AG++ R KM E EL L VN G FL
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGIT--RDNFHWKM-PLEDWELVLRVNLTGSFL 114
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ +A S +E P I+ +S N
Sbjct: 115 VA-------KA-ASEA----------MREKNPGSIVLTASRV---YLGN----------- 142
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y S V TR LA L GI VN + PG + T
Sbjct: 143 LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETR 184
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-27
Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 47/229 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++ +TG+ +GIG A+ LA+ VI R E DL
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------------------ADL 42
Query: 203 ASQESI-RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ A A + + ++ L+ AGV T L + VN+ G L L
Sbjct: 43 STPGGRETAVAAVLDRCGGVLDGLVCCAGVGV-----TAANSGLVVAVNYFGVSALLDGL 97
Query: 262 LDKLQA---------NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
+ L + + + +A ++G
Sbjct: 98 AEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQ--------- 148
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK A R G G+ +N V PG V T +L+
Sbjct: 149 ----THLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA 193
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-27
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +TGA +G G+A AR A+ +++ R ++ + E L +K + VL D
Sbjct: 21 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE--LSAKTR-VLPLTLD 77
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE---EKIELQLGVNHMGHFLLT 258
+ + ++ A + + +E + LINNAG++ + + + N G T
Sbjct: 78 VRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYST 137
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
LLL +L A+ A + I+N+ SVA K Y +
Sbjct: 138 RLLLPRLIAH-----------------GAGASIVNLGSVAGKW------------PYPGS 168
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K F+ L L+GTG+ V + PG+ ++
Sbjct: 169 HVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESE 207
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-27
Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 51/227 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG+ GIG+AIA +LA + VI+ ++ + +E + + +
Sbjct: 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEE-IANKYGVKAHGVEMN 65
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L S+ESI EE+ I++L+NNAG++ R L + E L VN G FL+
Sbjct: 66 LLSEESINKAFEEIYNLVDGIDILVNNAGIT--RDKLFLRMSLLDWEEVLKVNLTGTFLV 123
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K R+ RI+N+SSV G N
Sbjct: 124 TQNSLRKMI---K-----QRW----------------GRIVNISSVVGFTG--N------ 151
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y+ +K + FT+ LAK L + VNAV PG + TD
Sbjct: 152 -----VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETD 193
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKCEKAR------KEVV--LESK 191
GK+ +TGA G G+ A LA+ A ++ CR + A+ KE V +E +
Sbjct: 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ 105
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGV 249
+ ++ R+ D+ S++A +E E I++L++N G+S +++ T+++ L
Sbjct: 106 GRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQT 165
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N +G + +L + + +I VSS RG
Sbjct: 166 NLIGAWHACRAVLPSMIER-GQG----------------GSVIFVSSTVGLRGA------ 202
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
P Q+ Y SK LA + I VN+V+PG VNT++ + +
Sbjct: 203 -------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMF 255
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-27
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 47/230 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE-----VVLESKNKYV 195
R + +VTGA +GIG+A++ LA A V D ++ +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKI-NVLINNAGVSGCR-----KMLTEEKIELQLGV 249
+ D++ + R E+V+ + +V+++ AG++ + M +E+ + + V
Sbjct: 66 AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGIT--QDEFLLHM-SEDDWDKVIAV 122
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RIINVSSVAHKRGTINKED 308
N G FL+T QA ++ + + IIN+SS+ K G N
Sbjct: 123 NLKGTFLVT-------QA-AAQALV----------SNGCRGSIINISSIVGKVG--N--- 159
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y SK + T+ A+ L GI N+V PG + T
Sbjct: 160 --------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATP 201
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 37/231 (16%), Positives = 74/231 (32%), Gaps = 61/231 (26%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+ +++ GA+ +G A+ L K+ A+VI A R V
Sbjct: 1 SNAMKILLIGASGTLGSAVKERLEKK-AEVITAGR--------HSGDV-----------T 40
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLL 257
D+ + +SI+ E+V K++ +++ G + LT EK + + G L
Sbjct: 41 VDITNIDSIKKMYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINL 96
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+L +D L + + +
Sbjct: 97 VLLGIDSLNDK--------------------GSFTLTTGIMMEDPI-------------V 123
Query: 318 TQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367
A + A F + A + GI +N V P ++ + +++
Sbjct: 124 QGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDKLEPFFEG 173
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-27
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKC 200
GK IVTG++ G+GKAIA +L A +++ + +E ++ V+ K
Sbjct: 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEE--FKAAGINVVVAKG 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+ + E + + +I++L+NNAG++ R L +E+ + L N +L
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRIDILVNNAGIT--RDTLMLKMSEKDWDDVLNTNLKSAYL 120
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
T ML K + +IIN++S+A G N
Sbjct: 121 CTKAVSKIML---K-----QKS----------------GKIINITSIAGIIG--N----- 149
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK + FT+ +AK GI NAV PGI+ TD
Sbjct: 150 ------AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTD 191
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-27
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 37/227 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ IVTGA++G+G A+ R LA+ A V+ E+ E L + ++ D
Sbjct: 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE--LGAAVRFR---NAD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLT-EEKIELQ-----LGVNHMGHF 255
+ ++ A K+E ++ L+N AG + K+L L + VN +G F
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ L + + + I+N +S+A G I
Sbjct: 122 NMIRLAAEVMSQGEPD------------ADGERGVIVNTASIAAFDGQIG---------- 159
Query: 316 DPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY SK T A+ L GI V + PGI +T ++
Sbjct: 160 ---QAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG 203
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 36/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKR---KAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
K V++TGA+ GIGKA A E + K+I+A R L+K E+ +K + E N V
Sbjct: 33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVA 92
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM--LTEEKIELQLGVNHMGHF 255
+ D+ E I+ F E + +E K I++L+NNAG + G ++ + E I+ N
Sbjct: 93 QLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALI 152
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T +L QA S I+N+ S+A + +Y
Sbjct: 153 NITQAVLPIFQAKNS------------------GDIVNLGSIAGRD------------AY 182
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y SK A FT L K L T I V + PG+V T+
Sbjct: 183 PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE 224
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 55/227 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA+ GIGKAIA LA+R AKVI + + +
Sbjct: 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGMALN 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ + ESI A + + E +++L+NNAG++ R L EE+ + N F L
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGIT--RDNLLMRMKEEEWSDIMETNLTSIFRL 121
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
+ M+ K R RIINV SV G N
Sbjct: 122 SKAVLRGMM---K-----KRQ----------------GRIINVGSVVGTMG--N------ 149
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K + FT+ +A+ + G+TVN V PG + TD
Sbjct: 150 -----AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETD 191
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 51/224 (22%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R K V+V A+ GIG+A+A L++ A+V + R+ + +++ V C
Sbjct: 18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----------VC 66
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV--SGCRKMLTEEKIELQLGVNHMGHFLLT 258
D +R + + ++ K++++L+ NAG +G LT E + + + +
Sbjct: 67 D------LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L ++ + RI+ ++S +
Sbjct: 121 RNYLPAMKEK--GW----------------GRIVAITSFSVISP-------------IEN 149
Query: 319 QA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
N +++A F + L+ + GITVN V PG T+ ++
Sbjct: 150 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE 193
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
K +VTGA+ GIG++IA +LA+ V + +K E +E +++K +
Sbjct: 4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEE--IKAKGVDSFAIQA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
++A + ++A +EV + ++VL+NNAG++ R L E++ + + N G F
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGIT--RDNLLMRMKEQEWDDVIDTNLKGVFN 119
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
ML + R IIN+SSV G N
Sbjct: 120 CIQKATPQML---R-----QRS----------------GAIINLSSVVGAVG--N----- 148
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y +K + T+ A+ L GITVNAV PG + +D
Sbjct: 149 ------PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSD 190
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+I +VTGA+ GIG+AIA ELA AKV + ++ + + K
Sbjct: 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAA--IAAAGGEAFAVKA 85
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D++ + + A V + +++VL+NNAG++ R L + + L +N G FL
Sbjct: 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGIT--RDTLLLRMKRDDWQSVLDLNLGGVFL 143
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
+ ML K R RIIN++SV + G N
Sbjct: 144 CSRAAAKIML---K-----QRS----------------GRIINIASVVGEMG--N----- 172
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y+ +K + T+ +AK L GITVNAV PG + TD
Sbjct: 173 ------PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATD 214
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 39/230 (16%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+G + ++TG +G+G A A L + A ++ E K+ L + +
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK--LGNNCVFA---PA 65
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--------TEEKIELQLGVNHM 252
D+ S++ ++ K + +++V +N AG++ K T E + L VN M
Sbjct: 66 DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLM 125
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
G F + L+ ++ N Q IIN +SVA G +
Sbjct: 126 GTFNVIRLVAGEMGQN------------EPDQGGQRGVIINTASVAAFEGQVG------- 166
Query: 313 NSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY+ SK V T +A+ L GI V + PG+ T +L
Sbjct: 167 ------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS 210
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 53/228 (23%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTGA+ GIG+AIA +LAK+ A V++ + K + E ++ + +
Sbjct: 4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDE--IKKLGSDAIAVRA 61
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+A+ E + ++ ++++L+NNAGV+ + L EE+ + + N G FL
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGVT--KDNLLMRMKEEEWDTVINTNLKGVFL 119
Query: 257 LT------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
T M+ + R+ RI+N++SV G N
Sbjct: 120 CTKAVSRFMM---R-----QRH----------------GRIVNIASVVGVTG--N----- 148
Query: 311 SENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y +K + T+ AK L ITVNA+ PG + TD
Sbjct: 149 ------PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATD 190
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 63/227 (27%), Positives = 88/227 (38%), Gaps = 63/227 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG N GIG AIAR A KV + R + E L KCD
Sbjct: 21 SRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGF-------------LAVKCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ E + +E+++ + + VLI NAGV+ + L +EE + N G F +
Sbjct: 68 ITDTEQVEQAYKEIEETHGPVEVLIANAGVT--KDQLLMRMSEEDFTSVVETNLTGTFRV 125
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
ML + ++ R++ +SSV G
Sbjct: 126 VKRANRAML---R-----AKK----------------GRVVLISSVVGLLG--------- 152
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK V F R LA+ L IT N V PG V+TD
Sbjct: 153 ----SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTD 195
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 41/222 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
+I VTG GIG +I + L K +V+ C + + K ++ ++ +
Sbjct: 13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLED--QKALGFDFYASEG 70
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGV---SGCRKMLTEEKIELQLGVNHMGHFLL 257
++ +S + ++VK E +I+VL+NNAG+ RKM T E + + N F +
Sbjct: 71 NVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKM-TREDWQAVIDTNLTSLFNV 129
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
T ++D + + RIIN+SSV ++G
Sbjct: 130 TKQVIDGMVER--GW----------------GRIINISSVNGQKG-------------QF 158
Query: 318 TQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y+ +K A + FT LA+ + G+TVN V PG + TD
Sbjct: 159 GQTNYSTAK-AGIHGFTMSLAQEVATKGVTVNTVSPGYIGTD 199
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 43/225 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ ++T G+GK + +L + V + D E ++ + + + +
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKET--YKDVEERLQFVQA 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHF 255
D+ +E + EE KI+ LINNAG E++ + N F
Sbjct: 65 DVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDY-EEDEWNEMIQGNLTAVF 123
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS--SVAHKRGTINKEDLNSEN 313
L L++ ++ + RIIN G
Sbjct: 124 HLLKLVVPVMRKQ--NF----------------GRIINYGFQGADSAPG--W-------- 155
Query: 314 SYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
++ + +K+ V T+ +A GIT N V PG + +
Sbjct: 156 ---IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGE 197
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 55/227 (24%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ +VTGA GIG+AIAR + A V + DK ++ ++ K V +
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSAN 81
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L+ ++SI+ AE ++E + I++L+NNAG++ R L ++ + L VN L
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGIT--RDGLFVRMQDQDWDDVLAVNLTAASTL 139
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ + RY RIIN++S+ G N
Sbjct: 140 TRELIHSMM---R-----RRY----------------GRIINITSIVGVVG--N------ 167
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P Q Y +K + F++ LA+ + ITVN + PG + +
Sbjct: 168 -----PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSA 209
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 46/243 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA--CRDLDKCEKAR----------KEVV-- 187
GK+ VTGA G G++ A LA+ A +I C+ + E
Sbjct: 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADL 70
Query: 188 LESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIE 244
++ N+ ++ + D+ ++++A + ++ ++++++ NAG+ L +EE
Sbjct: 71 VKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWT 130
Query: 245 LQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304
+ +N G + + + A II SSV +
Sbjct: 131 EMIDINLAGVWKTVKAGVPHMIAG-----------------GRGGSIILTSSVGGLKAYP 173
Query: 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364
+ T Y +K V R L I VN+VHP V T +L +
Sbjct: 174 H------------TGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT 221
Query: 365 YDS 367
+
Sbjct: 222 FKM 224
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 43/272 (15%), Positives = 71/272 (26%), Gaps = 61/272 (22%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
T+ + +VTGA +G++IA L V + + + N +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS-AI 63
Query: 197 CRKCDLAS-----------------QESIRAFAEEVKKENKKINVLINNAGV-------- 231
+ DL++ + +VL+NNA
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 123
Query: 232 --------SGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283
+ E G N + + L +A R +
Sbjct: 124 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI-------KAFAHR-----VAGTPAK 171
Query: 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGT 342
IIN+ + Y +K A TR A L
Sbjct: 172 HRGTNYSIINMVDAMTNQPL-------------LGYTIYTMAKGALEGLTRSAALELAPL 218
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
I VN V PG+ + ++ S V L
Sbjct: 219 QIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPL 250
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 4e-26
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 63/227 (27%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG N GIG AIA+ LA KV + R + + D
Sbjct: 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-------------FGVEVD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
+ +++ V++ + VL++NAG+S TEEK E + N G F +
Sbjct: 62 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLS--ADAFLMRMTEEKFEKVINANLTGAFRV 119
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
M + +++ R+I + SV+ G
Sbjct: 120 AQRASRSMQ---R-----NKF----------------GRMIFIGSVSGLWG--------- 146
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y SK + R +A+ L +T N V PG ++TD
Sbjct: 147 ----IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 189
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-26
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 45/224 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
++ VTG G+G AI+R L V ++ D +
Sbjct: 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMH--ERDAGRDFKAYAV 82
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHF 255
D+A ES AE+V + K++VLINNAG++ R KM T+ + + + F
Sbjct: 83 DVADFESCERCAEKVLADFGKVDVLINNAGIT--RDATFMKM-TKGDWDAVMRTDLDAMF 139
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T + + R+ RI+N+ SV RG
Sbjct: 140 NVTKQFIAGMVER--RF----------------GRIVNIGSVNGSRG------------- 168
Query: 316 DPTQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K A + FT+ LA GITVN V PG + T
Sbjct: 169 AFGQANYASAK-AGIHGFTKTLALETAKRGITVNTVSPGYLATA 211
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 9e-26
Identities = 43/272 (15%), Positives = 72/272 (26%), Gaps = 61/272 (22%)
Query: 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVL 196
T+ + +VTGA +G++IA L V + + + N +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS-AI 100
Query: 197 CRKCDLASQES-----------------IRAFAEEVKKENKKINVLINNAGV-------- 231
+ DL++ + + +VL+NNA
Sbjct: 101 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 160
Query: 232 --------SGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283
+ E G N + + L +A R +
Sbjct: 161 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI-------KAFAHR-----VAGTPAK 208
Query: 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGT 342
IIN+ + Y +K A TR A L
Sbjct: 209 HRGTNYSIINMVDAMTNQPL-------------LGYTIYTMAKGALEGLTRSAALELAPL 255
Query: 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
I VN V PG+ + ++ S V L
Sbjct: 256 QIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPL 287
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 53/227 (23%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+V+VTGA+ GIGKAIA L K KV++ R E+ K+ +E+ + D
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ--IEAYGGQAITFGGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
++ + + A + I+V++NNAG++ R L + + + + +N G FL
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNAGIT--RDTLLIRMKKSQWDEVIDLNLTGVFLC 117
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K R RIIN++SV G N
Sbjct: 118 TQAATKIMM---K-----KRK----------------GRIINIASVVGLIG--N------ 145
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
QA Y +K + F++ A+ I VN V PG + +D
Sbjct: 146 -----IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASD 187
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 50/232 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+V++TGA++GIG+AIAR ++ +++ R +++ + LC + D
Sbjct: 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPN--------TLCAQVD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG-------VNHMGH 254
+ + + +K + ++NNAG+ ML + + VN +G
Sbjct: 68 VTDKYTFDTAITRAEKIYGPADAIVNNAGM-----MLLGQIDTQEANEWQRMFDVNVLG- 121
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
LL +QA L+ + IIN+SS+A K+ +
Sbjct: 122 -LLNG-----MQAVLA-----------PMKARNCGTIINISSIAGKK------------T 152
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
+ AY +K A + + + + + + V + P V T++L H++
Sbjct: 153 FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQ 204
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-25
Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 52/227 (22%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ ++TGA+ GIG+AIA LA+ + + ++ +K E+ +E + V +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEAR-RRGSPLVAVLGAN 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
L E+ A + + ++ L+NNAG++ R L +E E L N F
Sbjct: 61 LLEAEAATALVHQAAEVLGGLDTLVNNAGIT--RDTLLVRMKDEDWEAVLEANLSAVFRT 118
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
T M+ K +R+ RI+N++SV G N
Sbjct: 119 TREAVKLMM---K-----ARF----------------GRIVNITSVVGILG--N------ 146
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y SK + FTR +AK GITVNAV PG + T+
Sbjct: 147 -----PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETE 188
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-25
Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 44/237 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM--ACRDLDKCEKAR------KEVV--LESK 191
GK ++TG G+G++ A LA+ A + + C + D E V +E
Sbjct: 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT 69
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGV 249
+ + K D+ + ++ +F E + I++ I NAG+S + + + + +G
Sbjct: 70 GRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N G F + + + RI+ VSS+
Sbjct: 130 NLTGTFNTIAAVAPGMIK----------------RNYG--RIVTVSSMLGHSAN------ 165
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
QA Y SK + T+ A L G GITVNAV PG + T + + +
Sbjct: 166 -------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVF 215
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 46/223 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG IA A+ A V+ D+D + K V + + D
Sbjct: 213 GKVAVVTGAARGIGATIAEVFARDGATVV--AIDVDGAAEDLKRVADKVGGTAL---TLD 267
Query: 202 LASQESIRAFAEEVKKEN-KKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
+ + +++ V + + K+++L+NNAG++ R L E++ + + VN +
Sbjct: 268 VTADDAVDKITAHVTEHHGGKVDILVNNAGIT--RDKLLANMDEKRWDAVIAVNLLAPQR 325
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT L+ E R+I +SS+A G N
Sbjct: 326 LTEGLVGNG----------------TIGEGG--RVIGLSSMAGIAG--N----------- 354
Query: 317 PTQA-YNQSKLANVL-FTRELAKRLEGTGITVNAVHPGIVNTD 357
Q Y +K A ++ LA L GIT+NAV PG + T
Sbjct: 355 RGQTNYATTK-AGMIGLAEALAPVLADKGITINAVAPGFIETK 396
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 8e-25
Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 36/228 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY---VLCR 198
KI+++TGA++G G+ A LA +V + RD+ + E + +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
+ D+ SQ S+ +++ E+ +I+VLI+NAG G + T E+ +N +
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQR 124
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ Q+ +I +SS + GT
Sbjct: 125 VNRAALPHMRR----------------QKHG--LLIWISSSSSAGGTP------------ 154
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
P A Y +K A + A+ L GI + + PG + +
Sbjct: 155 PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAH 202
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 40/227 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK---VIMACRDLDKCEK-ARKEVVLESKNKYVLCR 198
+V++TG ++GIG +A LA ++ V RDL + L +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
+ D+ +S+ A E V +++VL+ NAG+ G + L E+ + L VN +G
Sbjct: 63 QLDVRDSKSVAAARERV--TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ + S R++ SV G
Sbjct: 121 MLQAFLPDMKR----------------RGSG--RVLVTGSVGGLMGL------------- 149
Query: 317 PTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
P Y SK A LA L G+ ++ + G V+T +
Sbjct: 150 PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKV 196
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA 203
IV+VTGA G G+ I R ++ KVI R ++ ++ + E+ + + D+
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVR 56
Query: 204 SQESIRAFAEEVKKENKKINVLINNAGVS-GCRKM--LTEEKIELQLGVNHMGHFLLTML 260
++ +I + E I++L+NNAG++ G + E E + N+ G +T
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+L + IIN+ S A Y
Sbjct: 117 VLPGMVERNH------------------GHIINIGSTAGSW------------PYAGGNV 146
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
Y +K F+ L L GT + V + PG+V
Sbjct: 147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGT 183
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 39/228 (17%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R + +VTG +G+G A + L A+V++ D+ E V+
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVL--DIR------GEDVVADLGDRARFAAA 59
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGH 254
D+ + ++ + A ++ + + +++N AG ++L + + +N +G
Sbjct: 60 DVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGS 118
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
F + L +++ +E IIN +SVA G I
Sbjct: 119 FNVLRLAAERIAKTEPVGP--------NAEERG--VIINTASVAAFDGQIG--------- 159
Query: 315 YDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Q AY+ SK V T +A+ L I V + PG+ +T +L
Sbjct: 160 ----QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS 203
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 4e-23
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 59/227 (25%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TGA++GIG AIAR L K +KVI++ + +K + + C+
Sbjct: 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCN 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFLL 257
LA++E + +++L+ NAG++ L ++ + + +N +F+L
Sbjct: 69 LANKEECSNLISKT----SNLDILVCNAGIT--SDTLAIRMKDQDFDKVIDINLKANFIL 122
Query: 258 T------MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
M+ + RY RIIN+SS+ G N
Sbjct: 123 NREAIKKMI---Q-----KRY----------------GRIINISSIVGIAG--N------ 150
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
P QA Y SK + T+ L+ + GITVNAV PG + +D
Sbjct: 151 -----PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSD 192
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-22
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 45/225 (20%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG +G+G+A A L R +V++ DL + E ++ + D+
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVL--DLRR-EGED-----------LIYVEGDV 48
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGHFL 256
+E +R +E + +++ AGV K+L E L VN +G F
Sbjct: 49 TREEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ L ++ N E I+N +SVA G I +
Sbjct: 108 VLRLAAWAMRENPPD------------AEGQRGVIVNTASVAAFEGQIGQ---------- 145
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY SK V T A+ L G GI V V PG+ +T +L+
Sbjct: 146 --AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG 188
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-20
Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 39/228 (17%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S K+ +VTGA++G G+AIA VI R + + +
Sbjct: 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV-----AAYPDRAEAI 56
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGHFL 256
D+ E I A +V +++VL+NNAG G + TE ++ ++ G
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPAR 116
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
LT LL +++ S ++N+SS +
Sbjct: 117 LTRALLPQMRERGS------------------GSVVNISSFGGQLSF------------- 145
Query: 317 PTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
+ Y+ +K A + LA + GI V V PG T++ +
Sbjct: 146 AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGA 193
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 42/226 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI------MACRDLDKCEKARKEVVLESKN--- 192
G++VIVTGA GIG+A A A A+V+ A + VV E
Sbjct: 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG 86
Query: 193 KYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KML---TEEKIELQLG 248
+ V ++A + + + ++VL+NNAG+ R +M+ +EE+ + +
Sbjct: 87 EAVAD-GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI--VRDRMIANTSEEEFDAVIA 143
Query: 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKED 308
V+ GHF + A R RIIN SS A +G+
Sbjct: 144 VHLKGHFATM-----RHAAAYWRGLSKAGK-----AVDG--RIINTSSGAGLQGS----- 186
Query: 309 LNSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGI 353
Q Y+ +K T A + G+TVNA+ P
Sbjct: 187 --------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSA 224
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-18
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 50/224 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI-----MACRDLDKCEKARKEVVLESKN---K 193
G++V+VTGA G+G+A A A+R A V+ + + K A +VV E + K
Sbjct: 9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK 68
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KML---TEEKIELQLGV 249
V + S E+ + +I+V++NNAG+ R + ++E ++ V
Sbjct: 69 AV----ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGI--LRDRSFSRISDEDWDIIQRV 122
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
+ G F +T +A W + ++ RII +S + G
Sbjct: 123 HLRGSFQVT-------RA----------AWDH-MKKQNYGRIIMTASASGIYG------- 157
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
+ QA Y+ +KL + L I N + P
Sbjct: 158 ------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPN 195
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 64/223 (28%), Positives = 87/223 (39%), Gaps = 46/223 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVI-----MACRDLDKCEKARKEVVLESKN---K 193
K+VI+TGA G+GK + E AK AKV+ A KA VV E
Sbjct: 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV 67
Query: 194 YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNH 251
V D + E K ++V+INNAG+ M +TE+ +L + V+
Sbjct: 68 AV----ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHL 123
Query: 252 MGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNS 311
G F +T +A W Y FQ+ RI+N SS A G
Sbjct: 124 NGAFAVT-------KA----------AWPY-FQKQKYGRIVNTSSPAGLYG--------- 156
Query: 312 ENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPGI 353
+ QA Y +K A + F LAK I NA+ P
Sbjct: 157 ----NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA 195
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 46/260 (17%)
Query: 100 CENGENLRNRVHNIVNGVIVFDVVLRGDVLGGAKYTEETSARGKIVIVTGANTGIGKAIA 159
E L+N+ ++N R A S + K+V++TGA G+GK A
Sbjct: 280 SRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYA 339
Query: 160 RELAKRKAKVIMACRDLDKCEKARKEVVLESKNKY--VLCRKCDLASQESIRAFAEEVKK 217
+ AK AKV++ D + V E K + D+A + A + V
Sbjct: 340 KWFAKYGAKVVVN--DFK----DATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVID 391
Query: 218 ENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSL 274
+ I++L+NNAG+ R KM ++++ + V+ +G F L+ +
Sbjct: 392 KYGTIDILVNNAGILRDRSFAKM-SKQEWDSVQQVHLIGTFNLS-------RL------- 436
Query: 275 CNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA-YNQSKLANVLFTR 333
W Y F E RIIN++S + G QA Y+ SK + ++
Sbjct: 437 ---AWPY-FVEKQFGRIINITSTSGIYGNFG-------------QANYSSSKAGILGLSK 479
Query: 334 ELAKRLEGTGITVNAVHPGI 353
+A I VN V P
Sbjct: 480 TMAIEGAKNNIKVNIVAPHA 499
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 6e-16
Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 50/224 (22%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM-----ACRDLDKCEKARKEVVLESKNKYVL 196
G++ +VTGA G+G+ A A+R AKV++ ++A VV E +
Sbjct: 19 GRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE 78
Query: 197 CRKCDLASQESIRAFAEEVK---KENKKINVLINNAGVSGCR-KML---TEEKIELQLGV 249
+A S+ A+ ++ K ++++L+NNAG+ R + L +E+ L V
Sbjct: 79 A----VADYNSVIDGAKVIETAIKAFGRVDILVNNAGI--LRDRSLVKTSEQDWNLVNDV 132
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
+ G F T QA + Y ++ RII SS + G
Sbjct: 133 HLKGSFKCT-------QA----------AFPY-MKKQNYGRIIMTSSNSGIYGNFG---- 170
Query: 310 NSENSYDPTQA-YNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352
Q Y +K+ + +A + N + P
Sbjct: 171 ---------QVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPT 205
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK +V +G A LA A+V++ R LDK + A V K
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVT---AA 174
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAG 230
+ A S + + +
Sbjct: 175 ETADDASRAEAVKGA-------HFVFTAGA 197
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 7e-08
Identities = 68/495 (13%), Positives = 138/495 (27%), Gaps = 159/495 (32%)
Query: 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIG-TTLKMLTGPSSFNL 73
++ LR AL EL + + G G G T + + S+ +
Sbjct: 134 LQPYLKLRQALLELRPAKNVL--------ID-----G---VLGSGKTWVALDVC-LSYKV 176
Query: 74 V---AFIVH-VTIGM---DTQLVFPKQKICRLF-------CENGENLRNRVHNI------ 113
F + + + ++ QK+ ++ N++ R+H+I
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 114 -------VNGVIVFDVVLRGDVLGGAKYTEETSA---RGKIVIVTGANTGIGKAIARELA 163
N ++V +V + + +A KI++ T
Sbjct: 237 LLKSKPYENCLLVLL-----NV----QNAKAWNAFNLSCKILLTT--------------- 272
Query: 164 KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA-------EEVK 216
R +V L + L+ + L E +++
Sbjct: 273 -RFKQVT---DFLS--AATTTHISLDHHSM-------TLTPDEVKSLLLKYLDCRPQDLP 319
Query: 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL---LDKLQANLSRYS 273
+E N +S + + + H+ LT ++ L+ L+ R
Sbjct: 320 REVLTTNPRR----LSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRK- 373
Query: 274 LCNLIWYY----VFQESA--PSRII----------NVSSVA---HKRGTINKEDLNSENS 314
+ VF SA P+ ++ +V V HK + K
Sbjct: 374 ------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426
Query: 315 YDP-------TQAYNQSKLANVLFTR-ELAKRLEGTGITVNAV----------HPGIVNT 356
P + N+ L + + K + + + H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------ 480
Query: 357 DILRHSSYYDSW--LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVS--GKYFACY 412
L++ + + V L +L K S+ +L+ + Y
Sbjct: 481 --LKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 413 D-RYEARVDGRFSFV 426
D +YE V+ F+
Sbjct: 538 DPKYERLVNAILDFL 552
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 7e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295
L KLQA+L Y+ +SAP+ I +
Sbjct: 22 LKKLQASLKLYA----------DDSAPALAIKAT 45
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 38/234 (16%), Positives = 66/234 (28%), Gaps = 59/234 (25%)
Query: 130 GGAKYTEETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARK---E 185
G + V GA TG +G AR + +++ R + ++ E
Sbjct: 1 GMDEQPLSRPGAHVKYAVLGA-TGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPE 59
Query: 186 VVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIEL 245
++ + + + +I +AG R +E++
Sbjct: 60 CR-----------VAEMLDHAGLERALRGL-------DGVIFSAGYYPSRPRRWQEEVA- 100
Query: 246 QLGVNHMGHFLLTMLLLDK-LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA----HK 300
T LQA + R I+ V S H
Sbjct: 101 ---SALGQ----TNPFYAACLQARVPR-------------------ILYVGSAYAMPRHP 134
Query: 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
+G E L ++ +Y K A E A+ G+ V PG+V
Sbjct: 135 QGLPGHEGLFYDSLPSGKSSYVLCKWA----LDEQAREQARNGLPVVIGIPGMV 184
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* Length = 405 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEK--------- 181
+ K V+V GA+TG G A A A + + E
Sbjct: 37 VTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYN 96
Query: 182 -ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTE 240
A K Y D S E + + +K++ +++ +I + T
Sbjct: 97 SAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTG 156
Query: 241 EK 242
E
Sbjct: 157 EV 158
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK 191
AK G +V+VTGAN + + +L + KV R K +K +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 192 NKYVLCRKCDLASQESIRAFAEEVKK 217
++ D+ Q A+ E +K
Sbjct: 61 GRFETAVVEDMLKQG---AYDEVIKG 83
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARK 184
K ++T + + K LAK + + I+ R ++ +
Sbjct: 165 EKAFVMTAGASQLCKL-IIGLAKEEGFRPIVTVRRDEQIALLKD 207
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.98 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.97 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.97 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.96 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.96 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.95 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.93 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.92 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.92 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.92 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.91 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.9 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.9 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.9 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.9 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.9 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.9 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.89 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.89 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.89 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.88 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.88 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.88 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.88 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.87 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.87 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.87 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.87 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.87 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.87 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.87 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.86 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.86 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.86 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.86 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.86 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.86 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.86 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.86 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.86 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.86 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.86 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.85 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.85 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.85 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.85 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.85 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.85 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.85 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.84 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.84 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.84 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.84 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.84 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.84 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.84 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.84 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.83 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.83 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.83 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.83 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.83 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.82 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.82 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.82 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.82 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.81 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.81 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.8 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.8 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.79 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.79 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.78 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.78 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.78 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.78 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.78 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.78 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.77 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.75 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.75 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.74 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.73 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.7 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.69 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 99.68 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.67 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.64 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.62 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 99.62 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.61 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.61 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.61 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.61 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.6 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 99.57 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 99.55 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 99.55 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 99.54 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.54 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.51 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 99.49 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 99.49 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 99.49 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 99.48 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.47 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 99.47 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 99.46 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.45 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 99.44 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 99.44 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 99.44 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 99.42 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 99.39 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 99.39 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 99.39 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 99.38 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 99.37 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 99.36 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 99.32 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 99.31 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.31 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 99.3 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.29 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 99.27 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 99.27 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 99.2 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 99.2 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 99.14 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 99.07 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 99.03 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 99.01 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 99.01 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 99.01 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 99.0 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 98.98 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 98.87 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 98.82 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 98.78 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 98.77 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.71 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 98.7 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 98.69 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.67 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.58 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.53 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.49 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.48 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.48 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.48 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.44 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.43 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.41 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 98.4 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.4 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.39 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 98.31 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.31 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.24 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.21 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.2 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.2 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.18 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.17 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.16 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.15 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.15 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.13 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.12 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.12 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.12 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 98.09 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.08 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.07 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 98.01 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 97.99 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.99 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.98 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.96 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.9 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.85 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.83 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.81 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.75 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.73 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.72 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.68 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.67 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.66 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.61 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.61 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.6 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.59 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.56 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.54 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.53 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.52 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.52 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.49 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.47 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.45 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.45 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.44 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.4 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.37 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.37 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.32 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.3 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.28 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.26 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.24 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 97.22 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 97.2 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.19 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 97.19 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.18 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.06 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.05 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.99 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.99 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.93 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.87 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.87 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.83 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.83 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 96.82 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.8 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.8 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.78 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.76 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.75 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.73 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.68 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.67 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.66 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.62 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.57 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.57 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.57 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.55 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.55 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.55 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.52 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.49 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.49 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.48 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.4 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.37 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.37 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.36 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.34 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.33 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.31 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.3 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.3 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.28 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.25 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.25 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.23 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.21 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.2 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.17 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.17 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.14 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.11 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.07 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.04 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.02 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 96.02 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.96 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.9 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.89 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.87 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.82 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.82 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.81 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.71 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.63 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=400.62 Aligned_cols=247 Identities=27% Similarity=0.307 Sum_probs=220.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.++++... .++.++++|++|+++++++++++.+
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999987654 4788999999999999999999999
Q ss_pred hCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+||+||+||||||+... ..+.++++|++++++|+.|+|+++++++|+|+ +++.|+|||+
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~------------------~~~~G~IVni 142 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIML------------------KQGKGVIVNT 142 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEE
Confidence 99999999999997643 36789999999999999999999999999998 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|........+...+...
T Consensus 143 sS~~g~~~~------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~ 210 (254)
T 4fn4_A 143 ASIAGIRGG------------FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLT 210 (254)
T ss_dssp CCGGGTCSS------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHH
T ss_pred echhhcCCC------------CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHH
Confidence 999998875 66889999999999999999999999999999999999999998766543343333333
Q ss_pred h-HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 K-PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~-~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. ..|.+|+.+|+|+|++++||+|+ +++++||+.|.+|||++.
T Consensus 211 ~~~~~~~R~g~pediA~~v~fLaSd-~a~~iTG~~i~VDGG~t~ 253 (254)
T 4fn4_A 211 KLMSLSSRLAEPEDIANVIVFLASD-EASFVNGDAVVVDGGLTV 253 (254)
T ss_dssp HHHTTCCCCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred hcCCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCEEEeCCCccc
Confidence 3 34568899999999999999965 589999999999999875
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-53 Score=398.58 Aligned_cols=248 Identities=21% Similarity=0.235 Sum_probs=224.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.... .++.+++||++|+++++++++++.
T Consensus 4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999987764 378899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||+.... .+.+.++|++++++|+.|+|+++++++|+|.+ +++.|+||++
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-----------------~~~~G~IVni 144 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIA-----------------RNSGGKIINI 144 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEE
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------ccCCCEEEEE
Confidence 9999999999999986543 67899999999999999999999999999973 3467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.+.... ++...+.+.
T Consensus 145 sS~~~~~~~------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~-~~~~~~~~~ 211 (255)
T 4g81_D 145 GSLTSQAAR------------PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIE-DKQFDSWVK 211 (255)
T ss_dssp CCGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHT-CHHHHHHHH
T ss_pred eehhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccC-CHHHHHHHH
Confidence 999998775 6788999999999999999999999999999999999999999876432 244455566
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+|.+|+.+|+|+|++++||+++ +++++||+.|.+|||+..
T Consensus 212 ~~~Pl~R~g~pediA~~v~fL~S~-~a~~iTG~~i~VDGG~~A 253 (255)
T 4g81_D 212 SSTPSQRWGRPEELIGTAIFLSSK-ASDYINGQIIYVDGGWLA 253 (255)
T ss_dssp HHSTTCSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred hCCCCCCCcCHHHHHHHHHHHhCc-hhCCCcCCEEEECCCeEe
Confidence 788899999999999999999965 589999999999999864
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-51 Score=387.61 Aligned_cols=241 Identities=25% Similarity=0.260 Sum_probs=209.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++. .++..+++|++|+++++++++++.++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999988877762 35778899999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||+... ..+.++++|++++++|+.|+|+++++++|+|+ +.|+||++||
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~--------------------~~G~IInisS 160 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLA--------------------RGSSVVLTGS 160 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEE--------------------EEEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHh--------------------hCCeEEEEee
Confidence 9999999999998643 37789999999999999999999999999885 2489999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc----hhHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD----SWLSTV 372 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~----~~~~~~ 372 (429)
.++..+. +...+|++||+|+.+|+|+||.||+++|||||+|+||+|+|++........ +...+.
T Consensus 161 ~~~~~~~------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~ 228 (273)
T 4fgs_A 161 TAGSTGT------------PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNA 228 (273)
T ss_dssp GGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHH
T ss_pred hhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHH
Confidence 9998775 678899999999999999999999999999999999999999987654322 223344
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+|++|+.+|||+|++++||+|+ +++++||+.|.+|||.+.
T Consensus 229 ~~~~~PlgR~g~peeiA~~v~FLaSd-~a~~iTG~~i~VDGG~s~ 272 (273)
T 4fgs_A 229 LAAQVPMGRVGRAEEVAAAALFLASD-DSSFVTGAELFVDGGSAQ 272 (273)
T ss_dssp HHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTT
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCccCCeEeECcChhh
Confidence 56678899999999999999999965 589999999999999753
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=381.97 Aligned_cols=242 Identities=24% Similarity=0.284 Sum_probs=209.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.++|+||++|||||++|||+++|+.|+++|++|++++|+.+ ++..+++.... .++..++||++|+++++++++
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~-- 76 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFT-- 76 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSST--
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHH--
Confidence 357899999999999999999999999999999999999864 34455555443 378899999999998877663
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+|+||+||||||+.... .++++++|++++++|+.|+|+++++++|+|.+ +...|+|||
T Consensus 77 ---~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~-----------------~g~~G~IVn 136 (247)
T 4hp8_A 77 ---DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLA-----------------KGRSGKVVN 136 (247)
T ss_dssp ---TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEE
T ss_pred ---hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------hCCCcEEEE
Confidence 58999999999986543 67899999999999999999999999999973 334799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+.+|+|+||.||+++|||||+|+||+|+|+|.+.... ++...+.+
T Consensus 137 isS~~~~~g~------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~-~~~~~~~~ 203 (247)
T 4hp8_A 137 IASLLSFQGG------------IRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRA-DAARNKAI 203 (247)
T ss_dssp ECCGGGTSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-SHHHHHHH
T ss_pred EechhhCCCC------------CCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhccc-CHHHHHHH
Confidence 9999998875 6688999999999999999999999999999999999999999876432 23344556
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+|++|+.+|+|+|.+++||+|+ +++++||+.|.+|||+..
T Consensus 204 ~~~~PlgR~g~peeiA~~v~fLaSd-~a~~iTG~~i~VDGG~~A 246 (247)
T 4hp8_A 204 LERIPAGRWGHSEDIAGAAVFLSSA-AADYVHGAILNVDGGWLA 246 (247)
T ss_dssp HTTCTTSSCBCTHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGG
T ss_pred HhCCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCeEEECccccc
Confidence 6788999999999999999999965 589999999999999864
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=380.58 Aligned_cols=248 Identities=23% Similarity=0.247 Sum_probs=211.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++|+||++|||||++|||+++|+.|+++|++|++++|+.++.+. .+++..... ++.+++||++|+++++++++++.
T Consensus 2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQRQP--RATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHHCT--TCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhcCC--CEEEEEeecCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999876543 344544433 67889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++||+||+||||||+.... .+.+.++|++.+++|+.|+|+++++++|+|++ .+|+||++|
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-------------------~~G~IVnis 139 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKA-------------------TRGAIVNIS 139 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HTCEEEEEC
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-------------------cCCeEEEEe
Confidence 9999999999999986433 56789999999999999999999999999972 249999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLSTV 372 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~~ 372 (429)
|.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.+.... ..+.....
T Consensus 140 S~~~~~~~------------~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~ 207 (258)
T 4gkb_A 140 SKTAVTGQ------------GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAE 207 (258)
T ss_dssp CTHHHHCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHH
T ss_pred ehhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHH
Confidence 99998875 6688999999999999999999999999999999999999999876532 11223344
Q ss_pred HHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 373 VLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 373 ~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+...+|.+ |+.+|+|+|++++||+|+ +++++||+.|.+|||++...
T Consensus 208 ~~~~~plg~R~g~peeiA~~v~fLaS~-~a~~iTG~~i~VDGG~T~l~ 254 (258)
T 4gkb_A 208 IAAKVPLGRRFTTPDEIADTAVFLLSP-RASHTTGEWLFVDGGYTHLD 254 (258)
T ss_dssp HHTTCTTTTSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTTSC
T ss_pred HHhcCCCCCCCcCHHHHHHHHHHHhCc-hhcCccCCeEEECCCcchhh
Confidence 55667774 899999999999999965 58999999999999987543
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=378.68 Aligned_cols=234 Identities=25% Similarity=0.289 Sum_probs=203.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||++|||||++|||+++|+.|+++|++|++++|+.+++++. ...++..+++|++|+++++++++ +
T Consensus 8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~--------~~~~~~~~~~Dv~~~~~v~~~~~----~ 75 (242)
T 4b79_A 8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP--------RHPRIRREELDITDSQRLQRLFE----A 75 (242)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC--------CCTTEEEEECCTTCHHHHHHHHH----H
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh--------hcCCeEEEEecCCCHHHHHHHHH----h
Confidence 36999999999999999999999999999999999998765421 23468889999999999888765 5
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|+||+||||||+..+..+.+.++|++++++|+.|+|+++++++|+|++ ++|+|||+||.+
T Consensus 76 ~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~-------------------~~G~IVnisS~~ 136 (242)
T 4b79_A 76 LPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQ-------------------RGGSILNIASMY 136 (242)
T ss_dssp CSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HCEEEEEECCGG
T ss_pred cCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------------------cCCeEEEEeecc
Confidence 7999999999999877788899999999999999999999999999962 349999999999
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++..+|++||+|+.+|+|+||.||+++|||||+|+||+|+|||.+.... +++..+.+...+|
T Consensus 137 ~~~~~------------~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~-~~~~~~~~~~~~P 203 (242)
T 4b79_A 137 STFGS------------ADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKA-DVEATRRIMQRTP 203 (242)
T ss_dssp GTSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CC-CHHHHHHHHHTCT
T ss_pred ccCCC------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccC-CHHHHHHHHhcCC
Confidence 98875 6688999999999999999999999999999999999999999877643 3445566777889
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
++|+.+|+|+|++++||+|+ +++++||+.|.+|||+..
T Consensus 204 lgR~g~peeiA~~v~fLaSd-~a~~iTG~~l~VDGG~la 241 (242)
T 4b79_A 204 LARWGEAPEVASAAAFLCGP-GASFVTGAVLAVDGGYLC 241 (242)
T ss_dssp TCSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGG
T ss_pred CCCCcCHHHHHHHHHHHhCc-hhcCccCceEEECccHhh
Confidence 99999999999999999965 589999999999999764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=367.20 Aligned_cols=231 Identities=23% Similarity=0.293 Sum_probs=203.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+||||||++|||+++|++|+++|++|++++|+.+++++..++ . .++.+++||++|+++++++++++.+++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 75 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----R--PNLFYFHGDVADPLTLKKFVEYAMEKLQR 75 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----C--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----c--CCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 59999999999999999999999999999999998877655433 2 36788999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
||+||||||+.... .+.+.++|++++++|+.|+|+++++++|+|. ++ +|+||++||.++
T Consensus 76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~-~G~IInisS~~~ 136 (247)
T 3ged_A 76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELI------------------KN-KGRIINIASTRA 136 (247)
T ss_dssp CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HT-TCEEEEECCGGG
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------hc-CCcEEEEeeccc
Confidence 99999999987543 6789999999999999999999999999997 33 499999999999
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. +...+|++||+|+.+|+|+||.|+++ |||||+|+||+|+|++.+... +.....+|+
T Consensus 137 ~~~~------------~~~~~Y~asKaal~~ltk~lA~ela~-~IrVN~I~PG~i~t~~~~~~~-------~~~~~~~Pl 196 (247)
T 3ged_A 137 FQSE------------PDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVTEQQEFT-------QEDCAAIPA 196 (247)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEECSBCCCC---CC-------HHHHHTSTT
T ss_pred ccCC------------CCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEecCcCCCCCcHHHH-------HHHHhcCCC
Confidence 8775 67889999999999999999999997 999999999999999876543 334556788
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+|+.+|+|+|++++||+++ +++||+.|.+|||++.+-.
T Consensus 197 ~R~g~pediA~~v~fL~s~---~~iTG~~i~VDGG~s~r~~ 234 (247)
T 3ged_A 197 GKVGTPKDISNMVLFLCQQ---DFITGETIIVDGGMSKRMI 234 (247)
T ss_dssp SSCBCHHHHHHHHHHHHHC---SSCCSCEEEESTTGGGCCC
T ss_pred CCCcCHHHHHHHHHHHHhC---CCCCCCeEEECcCHHHhCc
Confidence 9999999999999999974 5899999999999987653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=369.73 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=217.7
Q ss_pred CCCCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+++|+||++|||||+| |||+++|++|+++|++|++++|+.+.++++.+++.+.. +.++.+++||+++++++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHH
Confidence 3689999999999875 99999999999999999999999999988887776543 34678899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 215 VKKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+.+++|+||+||||||+... ..+.+.++|+..+++|+.+++.+++.+.++++ ++
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~--------------------~~ 139 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMP--------------------EG 139 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCT--------------------TC
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------cC
Confidence 99999999999999997542 24567889999999999999999999887653 46
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++.+.... .+.
T Consensus 140 G~IVnisS~~~~~~~------------~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~-~~~ 206 (256)
T 4fs3_A 140 GSIVATTYLGGEFAV------------QNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGG-FNT 206 (256)
T ss_dssp EEEEEEECGGGTSCC------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTT-HHH
T ss_pred CEEEEEeccccccCc------------ccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccC-CHH
Confidence 999999999998775 6788999999999999999999999999999999999999999877653 234
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.+....|++|+.+|||+|++++||+|+ +++++||+.|.+|||++..
T Consensus 207 ~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd-~a~~iTG~~i~VDGG~~av 255 (256)
T 4fs3_A 207 ILKEIKERAPLKRNVDQVEVGKTAAYLLSD-LSSGVTGENIHVDSGFHAI 255 (256)
T ss_dssp HHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCccCCEEEECcCHHhc
Confidence 445567788899999999999999999965 5899999999999998754
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=366.84 Aligned_cols=239 Identities=18% Similarity=0.224 Sum_probs=203.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||++|||||++|||+++|+.|+++|++|++++|+.++. + ....++++|++++++++++++++.
T Consensus 6 l~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------~------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 6 FLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------L------PEELFVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp CCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------S------CTTTEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------C------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999976421 0 123467899999999999999999
Q ss_pred HhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+++|+||+||||||+... ..+.+.++|++.+++|+.|+++++++++|+|+ +++.|+||
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~------------------~~~~G~Iv 135 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMV------------------ARGSGVVV 135 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEE
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhh------------------hcCCceEE
Confidence 999999999999997532 36789999999999999999999999999998 45679999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------- 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------- 364 (429)
++||.++..+.+ .+..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++......
T Consensus 136 ~isS~~~~~~~~-----------~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~ 204 (261)
T 4h15_A 136 HVTSIQRVLPLP-----------ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGT 204 (261)
T ss_dssp EECCGGGTSCCT-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTC
T ss_pred EEEehhhccCCC-----------CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhcc
Confidence 999999887641 2468899999999999999999999999999999999999998654210
Q ss_pred Cc---hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 365 YD---SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 365 ~~---~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.. +.........+|++|+.+|||+|++++||+|+ +++++||+.|.+|||+-+
T Consensus 205 ~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~-~a~~itG~~i~VDGG~v~ 259 (261)
T 4h15_A 205 DLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASD-RAASITGAEYTIDGGTVP 259 (261)
T ss_dssp CHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTCSC
T ss_pred chhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCc-hhcCccCcEEEECCcCcc
Confidence 00 11122233457889999999999999999965 589999999999999754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=352.10 Aligned_cols=251 Identities=19% Similarity=0.231 Sum_probs=218.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++.++++|++|.++++++++++.
T Consensus 3 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999988888775555568999999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|+|+ +++.|+||++
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~i 144 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLE------------------SRADAAIVCV 144 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------TSTTEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------ccCCeEEEEE
Confidence 9999999999999986543 5678999999999999999999999999997 5567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------Cch
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------YDS 367 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------~~~ 367 (429)
||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.... ...
T Consensus 145 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 212 (265)
T 3lf2_A 145 NSLLASQPE------------PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWA 212 (265)
T ss_dssp EEGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHH
T ss_pred CCcccCCCC------------CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHH
Confidence 999988765 6688999999999999999999999999999999999999998654321 111
Q ss_pred hHHHHHHhH--HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 368 WLSTVVLKP--LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 368 ~~~~~~~~~--~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
......... .|.+++.+|+|+|++++||+++ .+.++||+.|.+|||....
T Consensus 213 ~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~-~~~~itG~~i~vdGG~~~~ 264 (265)
T 3lf2_A 213 QWTAQLARNKQIPLGRLGKPIEAARAILFLASP-LSAYTTGSHIDVSGGLSRH 264 (265)
T ss_dssp HHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSEEEEESSSCCCC
T ss_pred HHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCc-hhcCcCCCEEEECCCCcCC
Confidence 121212221 6778899999999999999965 4789999999999998653
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=351.44 Aligned_cols=258 Identities=22% Similarity=0.212 Sum_probs=218.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|++|+++++++++++.
T Consensus 3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (280)
T 3tox_A 3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAV 80 (280)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999888887543 3478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|. +++.|+||+
T Consensus 81 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 142 (280)
T 3tox_A 81 RRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIA------------------ALGGGSLTF 142 (280)
T ss_dssp HHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEE
Confidence 999999999999997632 35678999999999999999999999999998 556799999
Q ss_pred EcCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC-CCCCchhHHH
Q psy12836 294 VSSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH-SSYYDSWLST 371 (429)
Q Consensus 294 vSS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~-~~~~~~~~~~ 371 (429)
+||.++. .+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++... .....+....
T Consensus 143 isS~~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~ 210 (280)
T 3tox_A 143 TSSFVGHTAGF------------AGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRG 210 (280)
T ss_dssp ECCSBTTTBCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHH
T ss_pred EcChhhCcCCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHH
Confidence 9998886 332 6688999999999999999999999999999999999999998765 2222333444
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccccccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFSFVD 427 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~~~~~~ 427 (429)
.+....+.+++.+|+|+|++++||++++ ..++||+.|.+|||......+..++.+
T Consensus 211 ~~~~~~p~~r~~~pedvA~~v~~L~s~~-a~~itG~~i~vdGG~~~~~~a~~~~~~ 265 (280)
T 3tox_A 211 FVEGLHALKRIARPEEIAEAALYLASDG-ASFVTGAALLADGGASVTKAAENLYFQ 265 (280)
T ss_dssp HHHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGCC--------
T ss_pred HHhccCccCCCcCHHHHHHHHHHHhCcc-ccCCcCcEEEECCCccccccccchHHH
Confidence 4555667788999999999999999654 789999999999999999888876654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=346.48 Aligned_cols=247 Identities=24% Similarity=0.298 Sum_probs=219.0
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++
T Consensus 6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAA 83 (256)
T ss_dssp CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999998888886543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||++
T Consensus 84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~i 145 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQ------------------KAGGGAILNI 145 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 99999999999999987543 3678899999999999999999999999998 5567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+... .+.....+.
T Consensus 146 sS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~ 211 (256)
T 3gaf_A 146 SSMAGENTN------------VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL--TPEIERAML 211 (256)
T ss_dssp CCGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC--CHHHHHHHH
T ss_pred cCHHHcCCC------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc--CHHHHHHHH
Confidence 999987764 668899999999999999999999999999999999999999876543 233444455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 212 ~~~p~~r~~~~~dva~~~~~L~s~-~~~~itG~~i~vdgG~~~ 253 (256)
T 3gaf_A 212 KHTPLGRLGEAQDIANAALFLCSP-AAAWISGQVLTVSGGGVQ 253 (256)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSCC
T ss_pred hcCCCCCCCCHHHHHHHHHHHcCC-cccCccCCEEEECCCccc
Confidence 667778899999999999999965 478999999999999764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=343.61 Aligned_cols=242 Identities=26% Similarity=0.338 Sum_probs=214.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.. ....+++|++|+++++++++++.
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----NGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----cceEEEEeCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999988887777643 46788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|. +++.|+||++
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~------------------~~~~g~iv~i 140 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMM------------------KKRQGRIINV 140 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEEE
Confidence 9999999999999987543 5678999999999999999999999999998 4467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+... +.......
T Consensus 141 sS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~~~~~~ 205 (248)
T 3op4_A 141 GSVVGTMGN------------AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN---DEQRTATL 205 (248)
T ss_dssp CCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC---HHHHHHHH
T ss_pred cchhhcCCC------------CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC---HHHHHHHH
Confidence 999988775 678899999999999999999999999999999999999999987653 22333445
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|.+++.+|+|+|++++||+++ +..++||+.|.+|||...
T Consensus 206 ~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~vdgG~~~ 247 (248)
T 3op4_A 206 AQVPAGRLGDPREIASAVAFLASP-EAAYITGETLHVNGGMYM 247 (248)
T ss_dssp HTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSSC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCC-ccCCccCcEEEECCCeec
Confidence 566778899999999999999965 478999999999999753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=345.90 Aligned_cols=248 Identities=24% Similarity=0.270 Sum_probs=219.5
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... ..++.++++|++|+++++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3668999999999999999999999999999999999999999998888886543 247889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||+
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~------------------~~~~g~iv~ 144 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALI------------------ASGSGRVVL 144 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHSSCEEEE
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 99999999999999986533 6678999999999999999999999999998 446799999
Q ss_pred EcCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 294 VSSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+||.++. .+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++..... +.....
T Consensus 145 isS~~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---~~~~~~ 209 (262)
T 3pk0_A 145 TSSITGPITGY------------PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG---EEYIAS 209 (262)
T ss_dssp ECCSBTTTBCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC---HHHHHH
T ss_pred EechhhccCCC------------CCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC---HHHHHH
Confidence 9998875 443 668899999999999999999999999999999999999999876543 334445
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+....|.+++.+|+|+|++++||+++ ...++||+.|.+|||....
T Consensus 210 ~~~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~vdGG~~~~ 254 (262)
T 3pk0_A 210 MARSIPAGALGTPEDIGHLAAFLATK-EAGYITGQAIAVDGGQVLP 254 (262)
T ss_dssp HHTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTCC
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCcCCEEEECCCeecC
Confidence 56677788899999999999999965 4789999999999998764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=340.96 Aligned_cols=248 Identities=21% Similarity=0.227 Sum_probs=217.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+||++|||||++|||+++|++|+++|++|+++ +|+.+++++..+++.... .++.++++|++|.++++++++++.++
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999997 899998888888876543 47889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|+|+ +++.|+||++||
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~------------------~~~~g~iv~isS 141 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLME------------------KNGGGHIVSISS 141 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TTTCEEEEEEEE
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEECc
Confidence 99999999999975433 5678999999999999999999999999998 567799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... .+.........
T Consensus 142 ~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~ 208 (258)
T 3oid_A 142 LGSIRYL------------ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN-REDLLEDARQN 208 (258)
T ss_dssp GGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT-HHHHHHHHHHH
T ss_pred hhhCCCC------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc-CHHHHHHHHhc
Confidence 9887764 6688999999999999999999999999999999999999999876542 22333445566
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.|.+++.+|+|+|++++||++++ ..++||+.|.+|||.......
T Consensus 209 ~p~~r~~~~~dva~~v~~L~s~~-~~~itG~~i~vdGG~~~~~~~ 252 (258)
T 3oid_A 209 TPAGRMVEIKDMVDTVEFLVSSK-ADMIRGQTIIVDGGRSLLVLE 252 (258)
T ss_dssp CTTSSCBCHHHHHHHHHHHTSST-TTTCCSCEEEESTTGGGBCC-
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc-cCCccCCEEEECCCccCCCCC
Confidence 77789999999999999999765 689999999999998876553
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=345.60 Aligned_cols=250 Identities=25% Similarity=0.285 Sum_probs=218.8
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|+++++++++++
T Consensus 14 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 14 GVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988888765332 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+ ....|+||+
T Consensus 93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----------------~~~~g~iv~ 155 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVA-----------------AGEGGAIIT 155 (266)
T ss_dssp HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEE
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------cCCCeEEEE
Confidence 99999999999999987543 56789999999999999999999999999984 223689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... .+.....+
T Consensus 156 isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~ 222 (266)
T 4egf_A 156 VASAAALAPL------------PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-DEAKSAPM 222 (266)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-SHHHHHHH
T ss_pred EcchhhccCC------------CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-ChHHHHHH
Confidence 9999987764 6688999999999999999999999999999999999999998765432 12333445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+++.+|+|+|++++||+++ ...++||+.|.+|||+..
T Consensus 223 ~~~~p~~r~~~p~dva~~v~~L~s~-~~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 223 IARIPLGRFAVPHEVSDAVVWLASD-AASMINGVDIPVDGGYTM 265 (266)
T ss_dssp HTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCc-hhcCccCcEEEECCCccC
Confidence 5667788899999999999999965 478999999999999864
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=342.79 Aligned_cols=249 Identities=20% Similarity=0.258 Sum_probs=214.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999998888875433 4788999999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+... ..+.+.++|++++++|+.|+++++++++|+|.+ +...|+||++|
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~-----------------~~~~g~iv~is 142 (257)
T 3imf_A 80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIE-----------------KGIKGNIINMV 142 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HTCCCEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------hCCCcEEEEEC
Confidence 99999999999997643 356789999999999999999999999999953 44579999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc-CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE-GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~-~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
|.++..+. ++..+|++||+|+++|+++|+.|++ ++||+||+|+||+|.|++........+...+.+.
T Consensus 143 S~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 210 (257)
T 3imf_A 143 ATYAWDAG------------PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTI 210 (257)
T ss_dssp CGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHH
T ss_pred chhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHH
Confidence 99987764 6688999999999999999999997 7799999999999999976543211222334455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...|.+++.+|+|+|++++||++++ ..++||+.|.+|||....
T Consensus 211 ~~~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 211 QSVPLGRLGTPEEIAGLAYYLCSDE-AAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp TTSTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTSC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCch-hcCccCCEEEECCCcccC
Confidence 5677788999999999999999654 789999999999998764
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=344.43 Aligned_cols=243 Identities=25% Similarity=0.353 Sum_probs=214.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.++++||++|||||++|||+++|++|+++|++|++++| +.+.+++..+++.... .++.++++|++|.++++++++++
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~ 100 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAV 100 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998 6677777777765543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|. +++.|+||+
T Consensus 101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 162 (269)
T 4dmm_A 101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIML------------------KQRSGRIIN 162 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEE
Confidence 99999999999999987543 5678999999999999999999999999998 446799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++..... ...+
T Consensus 163 isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~------~~~~ 224 (269)
T 4dmm_A 163 IASVVGEMGN------------PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELA------AEKL 224 (269)
T ss_dssp ECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHH------HHHH
T ss_pred ECchhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccccc------HHHH
Confidence 9999988775 668899999999999999999999999999999999999999865432 2334
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+++.+|+|+|++++||++++...++||+.|.+|||...
T Consensus 225 ~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 225 LEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp GGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred HhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 55677788999999999999999887788999999999999765
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=345.27 Aligned_cols=245 Identities=25% Similarity=0.323 Sum_probs=216.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ++..+.+|++|.++++++++++.
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999888888766543 57788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|. +++.|+||++
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~i 162 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMM------------------KARGGRIVNI 162 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEEE
Confidence 9999999999999987543 5678999999999999999999999999998 4467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+... +.....+.
T Consensus 163 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~~~~~~ 227 (270)
T 3ftp_A 163 TSVVGSAGN------------PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLP---QEQQTALK 227 (270)
T ss_dssp CCHHHHHCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSC---HHHHHHHH
T ss_pred CchhhCCCC------------CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcC---HHHHHHHH
Confidence 999988765 678899999999999999999999999999999999999999876543 22333445
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 228 ~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 228 TQIPLGRLGSPEDIAHAVAFLASP-QAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp TTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSSC
T ss_pred hcCCCCCCCCHHHHHHHHHHHhCC-CcCCccCcEEEECCCccc
Confidence 566778889999999999999965 478999999999999765
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=346.67 Aligned_cols=250 Identities=22% Similarity=0.238 Sum_probs=210.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
++++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999998888876543 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|+|+ +++.|+||+
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~Iv~ 162 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLK------------------QRGGGAIVV 162 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCceEEE
Confidence 99999999999999853 346788999999999999999999999999998 446799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH----
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL---- 369 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~---- 369 (429)
+||.++..... .++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++...........
T Consensus 163 isS~~~~~~~~----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 232 (283)
T 3v8b_A 163 VSSINGTRTFT----------TPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIP 232 (283)
T ss_dssp ECCSBTTTBCC----------STTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCC
T ss_pred EcChhhccCCC----------CCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhh
Confidence 99998865211 1568899999999999999999999999999999999999999987643211110
Q ss_pred HHHHHhHHhh--hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 370 STVVLKPLVW--LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 370 ~~~~~~~~~~--~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
........|. +++.+|+|+|++++||+++ .+.++||+.|.+|||..+
T Consensus 233 ~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~-~a~~itG~~i~vdGG~~~ 281 (283)
T 3v8b_A 233 VEWPKGQVPITDGQPGRSEDVAELIRFLVSE-RARHVTGSPVWIDGGQGL 281 (283)
T ss_dssp CBCTTCSCGGGTTCCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTHHH
T ss_pred hhhhhhcCccccCCCCCHHHHHHHHHHHcCc-cccCCcCCEEEECcCccc
Confidence 0011122333 7889999999999999965 478999999999999764
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=346.34 Aligned_cols=247 Identities=19% Similarity=0.243 Sum_probs=218.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999888886543 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iV~i 160 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMI------------------PRGYGKIVNI 160 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 9999999999999986543 5678999999999999999999999999998 4466999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++.+.... .+.....+.
T Consensus 161 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~ 227 (271)
T 4ibo_A 161 GSLTSELAR------------ATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALID-NPEFDAWVK 227 (271)
T ss_dssp CCGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHH-CHHHHHHHH
T ss_pred ccHHhCCCC------------CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhccc-CHHHHHHHH
Confidence 999987764 6688999999999999999999999999999999999999998765421 123334455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 228 ~~~p~~r~~~pedva~~v~~L~s~-~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 228 ARTPAKRWGKPQELVGTAVFLSAS-ASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp HHSTTCSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCcEEEECCCeec
Confidence 567778899999999999999965 478999999999999764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=346.19 Aligned_cols=250 Identities=19% Similarity=0.206 Sum_probs=216.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|.++++++++++.
T Consensus 22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~ 100 (277)
T 4fc7_A 22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQAL 100 (277)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5578999999999999999999999999999999999999998888888765433 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+... ..+.+.++|++++++|+.|+++++++++|.|. +++.|+||++
T Consensus 101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~i 162 (277)
T 4fc7_A 101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFF------------------RDHGGVIVNI 162 (277)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTH------------------HHHCEEEEEE
T ss_pred HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEEE
Confidence 999999999999997643 35678999999999999999999999999987 3356899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++........+.......
T Consensus 163 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 230 (277)
T 4fc7_A 163 TATLGNRGQ------------ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKV 230 (277)
T ss_dssp CCSHHHHTC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHH
T ss_pred CchhhCCCC------------CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHh
Confidence 999988765 56889999999999999999999999999999999999999864322111223334455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...|.+++.+|+|+|++++||+++ .+.++||+.|.+|||....
T Consensus 231 ~~~p~~r~~~p~dvA~~v~fL~s~-~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 231 TASPLQRLGNKTEIAHSVLYLASP-LASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp HTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHcCC-ccCCcCCCEEEECCCcccC
Confidence 567778999999999999999965 4789999999999998654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=338.70 Aligned_cols=242 Identities=26% Similarity=0.320 Sum_probs=210.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|+++++++++++.+
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999888877766 23688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|++ ....|+||++|
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----------------~~~~g~iv~is 139 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRA-----------------AGKAGRVISIA 139 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEEC
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------cCCCcEEEEEC
Confidence 999999999999987543 56789999999999999999999999999983 22368999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... ... ..+..
T Consensus 140 S~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~--~~~-~~~~~ 204 (247)
T 3rwb_A 140 SNTFFAGT------------PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPH--NEA-FGFVE 204 (247)
T ss_dssp CTHHHHTC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGG--GGG-HHHHH
T ss_pred chhhccCC------------CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccCh--hHH-HHHHh
Confidence 99988775 6688999999999999999999999999999999999999998776532 111 12222
Q ss_pred H-HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 P-LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~-~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. .+.++..+|+|+|++++||+++ ...++||+.|.+|||+..
T Consensus 205 ~~~~~~r~~~pedva~~v~~L~s~-~~~~itG~~i~vdGG~~~ 246 (247)
T 3rwb_A 205 MLQAMKGKGQPEHIADVVSFLASD-DARWITGQTLNVDAGMVR 246 (247)
T ss_dssp HHSSSCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSSC
T ss_pred cccccCCCcCHHHHHHHHHHHhCc-cccCCCCCEEEECCCccC
Confidence 2 5567889999999999999965 478999999999999753
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=342.67 Aligned_cols=243 Identities=24% Similarity=0.320 Sum_probs=207.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|+++++++++++
T Consensus 21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999888776654 236889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.++++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||+
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~Iv~ 157 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMM------------------RRRYGRIIN 157 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HcCCcEEEE
Confidence 99999999999999986543 5678899999999999999999999999998 446799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+... +.....+
T Consensus 158 isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~~ 222 (266)
T 3grp_A 158 ITSIVGVVGN------------PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLN---EKQKEAI 222 (266)
T ss_dssp ECCC-------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCC---HHHHHHH
T ss_pred ECCHHHcCCC------------CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccC---HHHHHHH
Confidence 9999988764 568899999999999999999999999999999999999999987653 3333445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+++.+|+|+|++++||++++ ..++||+.|.+|||+..
T Consensus 223 ~~~~p~~r~~~~edvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 265 (266)
T 3grp_A 223 MAMIPMKRMGIGEEIAFATVYLASDE-AAYLTGQTLHINGGMAM 265 (266)
T ss_dssp HTTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC--
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCcc-ccCccCCEEEECCCeee
Confidence 56677888999999999999999654 78999999999999753
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=346.05 Aligned_cols=248 Identities=24% Similarity=0.249 Sum_probs=219.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... .++.++++|++|.++++++++++.
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999988888865432 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|+ +++.|+||++
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~iV~i 176 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLT------------------ASGRGRVILT 176 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHH------------------HHSSCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEEE
Confidence 9999999999999987543 5678999999999999999999999999998 4467999999
Q ss_pred cCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
||.++. .+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++..... +.....+
T Consensus 177 sS~~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~~ 241 (293)
T 3rih_A 177 SSITGPVTGY------------PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG---EEYISGM 241 (293)
T ss_dssp CCSBTTTBBC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC---HHHHHHH
T ss_pred eChhhccCCC------------CCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc---HHHHHHH
Confidence 999875 443 568899999999999999999999999999999999999999876543 3334445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
....|.+++.+|+|+|++++||+++ ...++||+.|.+|||.....
T Consensus 242 ~~~~p~~r~~~p~dvA~~v~fL~s~-~a~~itG~~i~vdGG~~~~~ 286 (293)
T 3rih_A 242 ARSIPMGMLGSPVDIGHLAAFLATD-EAGYITGQAIVVDGGQVLPE 286 (293)
T ss_dssp HTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTCBS
T ss_pred HhcCCCCCCCCHHHHHHHHHHHhCc-cccCCCCCEEEECCCccCCC
Confidence 5667788899999999999999965 47899999999999988744
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-45 Score=348.52 Aligned_cols=246 Identities=20% Similarity=0.240 Sum_probs=213.4
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++
T Consensus 27 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~ 104 (275)
T 4imr_A 27 TIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERA 104 (275)
T ss_dssp HHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999888888876543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+. +++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||+
T Consensus 105 ~~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~Iv~ 165 (275)
T 4imr_A 105 EAI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMV------------------ARKWGRVVS 165 (275)
T ss_dssp HHH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 888 9999999999986543 5678999999999999999999999999998 446799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++........+.....+
T Consensus 166 isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 233 (275)
T 4imr_A 166 IGSINQLRPK------------SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEY 233 (275)
T ss_dssp ECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHH
T ss_pred ECCHHhCCCC------------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHH
Confidence 9999887653 5677899999999999999999999999999999999999998765322122233334
Q ss_pred HhHH-hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPL-VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~-~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.... +.+++.+|+|+|++++||+++ .+.++||+.|.+|||+
T Consensus 234 ~~~~~p~~r~~~pedvA~~v~fL~s~-~a~~itG~~i~vdGG~ 275 (275)
T 4imr_A 234 VRTLNWMGRAGRPEEMVGAALFLASE-ACSFMTGETIFLTGGY 275 (275)
T ss_dssp HHHHSTTCSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESSCC
T ss_pred HhhcCccCCCcCHHHHHHHHHHHcCc-ccCCCCCCEEEeCCCC
Confidence 4444 778899999999999999965 4789999999999984
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-44 Score=339.88 Aligned_cols=246 Identities=20% Similarity=0.254 Sum_probs=214.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
..++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999888886543 4788999999999999999999999
Q ss_pred hCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|++|+||||||... +..+.+.++|++++++|+.+++++++.++|+|.+ + +|+||++
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~------------------~-~g~iv~i 145 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEE------------------S-KGAVVNV 145 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHH------------------H-TCEEEEE
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------c-CCEEEEE
Confidence 9999999999999853 2356789999999999999999999999999973 2 3899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------Cc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YD 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~ 366 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... ..
T Consensus 146 sS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 213 (264)
T 3ucx_A 146 NSMVVRHSQ------------AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSV 213 (264)
T ss_dssp CCGGGGCCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCH
T ss_pred CcchhccCC------------CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCH
Confidence 999988764 6688999999999999999999999999999999999999998654321 11
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+.+....|.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 214 ~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~-~~~~itG~~i~vdGG~~~ 263 (264)
T 3ucx_A 214 EDIYNAAAAGSDLKRLPTEDEVASAILFMASD-LASGITGQALDVNCGEYK 263 (264)
T ss_dssp HHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSSC
T ss_pred HHHHHHHhccCCcccCCCHHHHHHHHHHHcCc-cccCCCCCEEEECCCccC
Confidence 22333444556778899999999999999965 478999999999999754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=344.58 Aligned_cols=248 Identities=26% Similarity=0.315 Sum_probs=212.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
...++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 335689999999999999999999999999999999999999998888886543 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHH--HHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLD--KLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++| .|. +++.|+||
T Consensus 97 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~------------------~~~~g~iV 158 (279)
T 3sju_A 97 ERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMR------------------EAGWGRIV 158 (279)
T ss_dssp HHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHH------------------HHTCEEEE
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHh------------------hcCCcEEE
Confidence 9999999999999987543 5678999999999999999999999999 466 34569999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------C
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------Y 364 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~ 364 (429)
++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++.+... .
T Consensus 159 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~ 226 (279)
T 3sju_A 159 NIASTGGKQGV------------MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGV 226 (279)
T ss_dssp EECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCC
T ss_pred EECChhhccCC------------CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccC
Confidence 99999988764 668899999999999999999999999999999999999999865421 0
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+...+.+....|.+++.+|+|+|++++||+++. +.++||+.|.+|||...
T Consensus 227 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~-a~~itG~~i~vdGG~~~ 278 (279)
T 3sju_A 227 TEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDA-AASITAQALNVCGGLGN 278 (279)
T ss_dssp CHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSG-GGGCCSCEEEESTTCCC
T ss_pred ChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcc-ccCcCCcEEEECCCccC
Confidence 12334444556677788999999999999999654 78999999999999764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-44 Score=341.96 Aligned_cols=247 Identities=22% Similarity=0.285 Sum_probs=215.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999999998888886543 367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|.+ +...|+||++
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-----------------~~~~g~iv~i 167 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVD-----------------QGLGGTIITT 167 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------cCCCcEEEEE
Confidence 9999999999999987543 56789999999999999999999999999984 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+.. .++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... ....+.
T Consensus 168 sS~~~~~~~~----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~----~~~~~~ 233 (276)
T 3r1i_A 168 ASMSGHIINI----------PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLAD----YHALWE 233 (276)
T ss_dssp CCGGGTSCCC----------SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGG----GHHHHG
T ss_pred CchHhcccCC----------CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchH----HHHHHH
Confidence 9998876531 13567899999999999999999999999999999999999999876432 334455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|.+++.+|+|+|++++||+++ .+.++||+.|.+|||+..
T Consensus 234 ~~~p~~r~~~pedvA~~v~fL~s~-~~~~itG~~i~vdGG~~~ 275 (276)
T 3r1i_A 234 PKIPLGRMGRPEELTGLYLYLASA-ASSYMTGSDIVIDGGYTC 275 (276)
T ss_dssp GGSTTSSCBCGGGSHHHHHHHHSG-GGTTCCSCEEEESTTTTC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCc-cccCccCcEEEECcCccC
Confidence 567778899999999999999965 478999999999999754
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=342.24 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=213.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKTT 96 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999998888777664 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|+ +++.|+||++
T Consensus 97 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~~~~g~iv~i 158 (277)
T 4dqx_A 97 AKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMR------------------RNGGGSIINT 158 (277)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TTTCEEEEEE
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEEEE
Confidence 9999999999999986543 5678999999999999999999999999997 5567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~ 371 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++..... ........
T Consensus 159 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 226 (277)
T 4dqx_A 159 TSYTATSAI------------ADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRS 226 (277)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHH
T ss_pred CchhhCcCC------------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHH
Confidence 999987764 668899999999999999999999999999999999999999843211 11111222
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+....+.+++.+|+|+|++++||+++. ..++||+.|.+|||.....
T Consensus 227 ~~~~~~~~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~~~ 273 (277)
T 4dqx_A 227 DFNARAVMDRMGTAEEIAEAMLFLASDR-SRFATGSILTVDGGSSIGN 273 (277)
T ss_dssp HHHTTSTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSSSSCC
T ss_pred HHHhcCcccCCcCHHHHHHHHHHHhCCc-cCCCcCCEEEECCchhhhh
Confidence 2445566788899999999999999654 7899999999999988754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=341.32 Aligned_cols=249 Identities=20% Similarity=0.238 Sum_probs=210.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC----------------hhHHHHHHHHHhhhcCCceEEEEEe
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD----------------LDKCEKARKEVVLESKNKYVLCRKC 200 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~----------------~~~~~~~~~~l~~~~~~~~v~~~~~ 200 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.++++
T Consensus 6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 83 (286)
T 3uve_A 6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEV 83 (286)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEc
Confidence 457899999999999999999999999999999999987 67777777766543 347889999
Q ss_pred eCCCHHHHHHHHHHHHHhCCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccch
Q psy12836 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNL 277 (429)
Q Consensus 201 Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~ 277 (429)
|++|+++++++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---------- 153 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIA---------- 153 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH----------
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999999999999999986543 46789999999999999999999999999974
Q ss_pred hhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 278 IWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 278 ~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
....|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|+
T Consensus 154 -------~~~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~ 214 (286)
T 3uve_A 154 -------GGRGGSIILTSSVGGLKAY------------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTP 214 (286)
T ss_dssp -------HTSCEEEEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSST
T ss_pred -------CCCCcEEEEECchhhccCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCC
Confidence 2236899999999988764 668899999999999999999999999999999999999999
Q ss_pred cccCCC----------CCchh-HHH--HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 358 ILRHSS----------YYDSW-LST--VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 358 ~~~~~~----------~~~~~-~~~--~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
|.+... ..... ... .....+| +++.+|+|+|++++||+++ .+.++||+.|.+|||..++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~-~a~~itG~~i~vdGG~~l~ 286 (286)
T 3uve_A 215 MLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASD-EARYITGVTLPIDAGSCLK 286 (286)
T ss_dssp TTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGC
T ss_pred cccccchhhhccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCc-cccCCcCCEEeECCccccc
Confidence 976421 00010 001 1222344 6788999999999999965 4789999999999998753
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=334.80 Aligned_cols=241 Identities=24% Similarity=0.323 Sum_probs=212.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+.+|++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++|.++++++++++.++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQ 79 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999877 5677777777776543 46888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|+|+ +++.|+||++||
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS 141 (246)
T 3osu_A 80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQML------------------RQRSGAIINLSS 141 (246)
T ss_dssp HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEEEcc
Confidence 99999999999987543 5678999999999999999999999999998 446799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+... +...+.+...
T Consensus 142 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---~~~~~~~~~~ 206 (246)
T 3osu_A 142 VVGAVGN------------PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALS---DELKEQMLTQ 206 (246)
T ss_dssp HHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSC---HHHHHHHHTT
T ss_pred hhhcCCC------------CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccC---HHHHHHHHhc
Confidence 9988775 668899999999999999999999999999999999999999976653 3344455566
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.|.+++.+|+|+|++++||++++ ..++||+.|.+|||..
T Consensus 207 ~p~~r~~~~~dva~~v~~l~s~~-~~~itG~~i~vdgG~~ 245 (246)
T 3osu_A 207 IPLARFGQDTDIANTVAFLASDK-AKYITGQTIHVNGGMY 245 (246)
T ss_dssp CTTCSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTSC
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEeCCCcc
Confidence 77788999999999999999654 7899999999999964
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=341.20 Aligned_cols=250 Identities=19% Similarity=0.197 Sum_probs=218.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ..++.++++|++|+++++++++++
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999988888866433 237889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+++|++|+||||||+.. +..+.+.++|++++++|+.|+++++++++|+|. +++.|+||
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~~~~g~iv 147 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMV------------------RGGGGSFV 147 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCEEEE
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEE
Confidence 999999999999999743 236678999999999999999999999999998 55679999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... .+.....
T Consensus 148 ~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~ 214 (281)
T 3svt_A 148 GISSIAASNTH------------RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE-SAELSSD 214 (281)
T ss_dssp EECCHHHHSCC------------TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-CHHHHHH
T ss_pred EEeCHHHcCCC------------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhccc-CHHHHHH
Confidence 99999988764 5678999999999999999999999999999999999999999765322 1223344
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+....|.+++.+|+|+|++++||++++ ..++||+.|.+|||....
T Consensus 215 ~~~~~p~~r~~~~~dva~~~~~l~s~~-~~~itG~~~~vdgG~~~~ 259 (281)
T 3svt_A 215 YAMCTPLPRQGEVEDVANMAMFLLSDA-ASFVTGQVINVDGGQMLR 259 (281)
T ss_dssp HHHHCSSSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGS
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCcc-cCCCCCCEEEeCCChhcc
Confidence 555667788999999999999999754 689999999999998876
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=343.22 Aligned_cols=247 Identities=25% Similarity=0.291 Sum_probs=209.4
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|+++++++++++
T Consensus 23 ~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 23 NHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp ----CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999888877766 236788999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|. +++.|+||+
T Consensus 98 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~Iv~ 159 (277)
T 3gvc_A 98 VAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMI------------------ERGGGAIVN 159 (277)
T ss_dssp HHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 99999999999999987543 5678999999999999999999999999998 556799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~~~~~ 372 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+..... .......
T Consensus 160 isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~ 227 (277)
T 3gvc_A 160 LSSLAGQVAV------------GGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAG 227 (277)
T ss_dssp ECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------C
T ss_pred EcchhhccCC------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHH
Confidence 9999988764 67889999999999999999999999999999999999999986542110 0011111
Q ss_pred HHh---HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLK---PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~---~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
... ..+.+++.+|+|+|++++||+++. ..++||+.|.+|||...+
T Consensus 228 ~~~~~~~~~~~r~~~pedvA~~v~~L~s~~-a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 228 GARSMIARLQGRMAAPEEMAGIVVFLLSDD-ASMITGTTQIADGGTIAA 275 (277)
T ss_dssp CHHHHHHHHHSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGS
T ss_pred hhhhhhhccccCCCCHHHHHHHHHHHcCCc-cCCccCcEEEECCcchhc
Confidence 112 455678999999999999999664 789999999999997653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=335.73 Aligned_cols=243 Identities=25% Similarity=0.312 Sum_probs=210.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.
T Consensus 3 m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999888777765 2368899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+||||||+.... .+.+.++|++.+++|+.|+++++++++|+|+ + .|+||++
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~--~g~iv~i 137 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIR------------------E--GGSIVFT 137 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------E--EEEEEEE
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh------------------c--CCEEEEE
Confidence 9999999999999987543 5678999999999999999999999998875 2 4899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch---hHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS---WLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~---~~~~ 371 (429)
||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+....... ....
T Consensus 138 sS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 205 (255)
T 4eso_A 138 SSVADEGGH------------PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKT 205 (255)
T ss_dssp CCGGGSSBC------------TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHH
T ss_pred CChhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHH
Confidence 999988764 6788999999999999999999999999999999999999998765322111 1222
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
......|.+++.+|+|+|++++||+++ ..++||+.|.+|||...+
T Consensus 206 ~~~~~~p~~r~~~pedvA~~v~~L~s~--~~~itG~~i~vdGG~~~~ 250 (255)
T 4eso_A 206 LGDNITPMKRNGTADEVARAVLFLAFE--ATFTTGAKLAVDGGLGQK 250 (255)
T ss_dssp HHHHHSTTSSCBCHHHHHHHHHHHHHT--CTTCCSCEEEESTTTTTT
T ss_pred HHhccCCCCCCcCHHHHHHHHHHHcCc--CcCccCCEEEECCCcccc
Confidence 233456778899999999999999975 689999999999998764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=340.64 Aligned_cols=248 Identities=19% Similarity=0.240 Sum_probs=209.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC------------hhHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD------------LDKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~------------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.... .++.++++|++|
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 100 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRD 100 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence 456899999999999999999999999999999999987 677777777775543 478899999999
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhh
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYY 281 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 281 (429)
.++++++++++.+++|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|.+
T Consensus 101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------------- 166 (299)
T 3t7c_A 101 FDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMA-------------- 166 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------------
Confidence 999999999999999999999999998654 356789999999999999999999999999873
Q ss_pred hcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 282 ~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
....|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...
T Consensus 167 ---~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~ 231 (299)
T 3t7c_A 167 ---GKRGGSIVFTSSIGGLRGA------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLN 231 (299)
T ss_dssp ---TTSCEEEEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS
T ss_pred ---cCCCcEEEEECChhhccCC------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccc
Confidence 3347999999999988765 6688999999999999999999999999999999999999999754
Q ss_pred CCC--------CchhHHH-----HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 362 SSY--------YDSWLST-----VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 362 ~~~--------~~~~~~~-----~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
... ..+.... .....++ +++.+|+|+|++++||+++ .+.++||+.|.+|||..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~-~a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 232 EPTYRMFRPDLENPTVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSD-DARYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHCTTSSSCCHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred cchhhhhhhhhccchhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCc-ccccCcCCEEeeCCCccc
Confidence 210 0000000 1122233 5678999999999999965 478999999999999865
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=334.32 Aligned_cols=246 Identities=20% Similarity=0.261 Sum_probs=212.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|+++++++++++.
T Consensus 3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999998888777662 357889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|.+ +...|+||++
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-----------------~~~~g~iv~i 140 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIA-----------------QGRGGKIINM 140 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEEE
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------cCCCeEEEEE
Confidence 9999999999999986543 56789999999999999999999999999973 2236899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYD 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~ 366 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+... ...
T Consensus 141 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 208 (259)
T 4e6p_A 141 ASQAGRRGE------------ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPR 208 (259)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCT
T ss_pred CChhhccCC------------CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCCh
Confidence 999988764 568899999999999999999999999999999999999999865431 001
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
......+....|.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 209 ~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~-~~~~itG~~i~vdgG~~~ 258 (259)
T 4e6p_A 209 GEKKRLVGEAVPFGRMGTAEDLTGMAIFLASA-ESDYIVSQTYNVDGGNWM 258 (259)
T ss_dssp THHHHHHHHHSTTSSCBCTHHHHHHHHHTTSG-GGTTCCSCEEEESTTSSC
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHHHHHhCC-ccCCCCCCEEEECcChhc
Confidence 22233344566778899999999999999965 478999999999999765
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=336.87 Aligned_cols=241 Identities=24% Similarity=0.285 Sum_probs=211.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|++|.++++++++++.
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999888877766 2357788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+++|++|+||||||+... ..+.+.++|++++++|+.|+++++++++|+|+ +++.|+||
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~iv 142 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLI------------------SAGGGAIV 142 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEE
Confidence 999999999999998733 24678999999999999999999999999998 55679999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+... .+.....
T Consensus 143 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~ 208 (271)
T 3tzq_B 143 NISSATAHAAY------------DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL--PQPIVDI 208 (271)
T ss_dssp EECCGGGTSBC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----CHHHHHH
T ss_pred EECCHHHcCCC------------CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC--CHHHHHH
Confidence 99999987764 668899999999999999999999999999999999999999876322 2333444
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
+....+.+++.+|+|+|++++||++++ ..++||+.|.+|||.
T Consensus 209 ~~~~~~~~r~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 209 FATHHLAGRIGEPHEIAELVCFLASDR-AAFITGQVIAADSGL 250 (271)
T ss_dssp HHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTT
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCcc-cCCcCCCEEEECCCc
Confidence 555667788999999999999999654 789999999999993
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=337.21 Aligned_cols=248 Identities=23% Similarity=0.296 Sum_probs=207.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC------------hhHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD------------LDKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~------------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.... .++.++++|++|
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 82 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKD 82 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCC
Confidence 567999999999999999999999999999999999997 556666666655433 478899999999
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhh
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYV 282 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (429)
+++++++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~---------------- 146 (281)
T 3s55_A 83 RAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMI---------------- 146 (281)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------
Confidence 9999999999999999999999999986543 6678999999999999999999999999998
Q ss_pred cccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC
Q psy12836 283 FQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 283 ~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~ 362 (429)
+++.|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++.+..
T Consensus 147 --~~~~g~iv~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~ 212 (281)
T 3s55_A 147 --KRNYGRIVTVSSMLGHSAN------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHND 212 (281)
T ss_dssp --HHTCEEEEEECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSH
T ss_pred --HcCCCEEEEECChhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccch
Confidence 4467999999999988765 56889999999999999999999999999999999999999987531
Q ss_pred C------C--CchhH---HHH--HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 363 S------Y--YDSWL---STV--VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 363 ~------~--~~~~~---~~~--~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
. . ..+.. ... .....+ +++.+|+|+|++++||++++ ..++||+.|.+|||...+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 213 FVFGTMRPDLEKPTLKDVESVFASLHLQY-APFLKPEEVTRAVLFLVDEA-SSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHC-------CCHHHHHHHHHHHCSSS-CSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGG
T ss_pred hhhccccccccccchhHHHHHHHhhhccC-cCCCCHHHHHHHHHHHcCCc-ccCCCCCEEEECCCcccC
Confidence 0 0 00000 010 011122 56789999999999999654 789999999999998753
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=339.14 Aligned_cols=248 Identities=22% Similarity=0.264 Sum_probs=208.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-------------ChhHHHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-------------DLDKCEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-------------~~~~~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
..+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++.+|++
T Consensus 6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 83 (277)
T 3tsc_A 6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTR 83 (277)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTT
T ss_pred ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCC
Confidence 34789999999999999999999999999999999998 6777777777665443 47889999999
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhh
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYY 281 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 281 (429)
|.++++++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------------- 149 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIE-------------- 149 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------------
Confidence 99999999999999999999999999987544 56789999999999999999999999999984
Q ss_pred hcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 282 ~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
+...|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.
T Consensus 150 ---~~~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~ 214 (277)
T 3tsc_A 150 ---GGRGGSIILISSAAGMKMQ------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG 214 (277)
T ss_dssp ---HTSCEEEEEECCGGGTSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH
T ss_pred ---cCCCCEEEEEccHhhCCCC------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc
Confidence 2236899999999988764 6688999999999999999999999999999999999999998653
Q ss_pred CCC--------CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 362 SSY--------YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 362 ~~~--------~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
... ..+.....+....+ .++.+|+|+|++++||++++ ..++||+.|.+|||...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 276 (277)
T 3tsc_A 215 DMVTAVGQAMETNPQLSHVLTPFLP-DWVAEPEDIADTVCWLASDE-SRKVTAAQIPVDQGSTQ 276 (277)
T ss_dssp HHHHHHHHHHHTCGGGTTTTCCSSS-CSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred hhhhhhhhcccccHHHHHHhhhccC-CCCCCHHHHHHHHHHHhCcc-ccCCcCCEEeeCCCccc
Confidence 100 00111111111223 26789999999999999764 78999999999999764
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=338.92 Aligned_cols=249 Identities=26% Similarity=0.279 Sum_probs=195.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++|+++++++++++
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence 45688999999999999999999999999999999995 7778888777776543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 216 KKENKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
.+++|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|.|.+.. ....|+|
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---------------~~~~g~I 166 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASD---------------ARASRSI 166 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC---------------CCCCEEE
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC---------------CCCCCEE
Confidence 999999999999999842 235678999999999999999999999999998421 1236899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... ....
T Consensus 167 v~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---~~~~ 231 (280)
T 4da9_A 167 INITSVSAVMTS------------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSG---KYDG 231 (280)
T ss_dssp EEECCC-------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------
T ss_pred EEEcchhhccCC------------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcch---hHHH
Confidence 999999988765 5678999999999999999999999999999999999999999765432 1112
Q ss_pred HHHh-HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLK-PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~-~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.... ..|.+++.+|+|+|++++||+++. ..++||+.|.+|||....
T Consensus 232 ~~~~~~~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~~ 278 (280)
T 4da9_A 232 LIESGLVPMRRWGEPEDIGNIVAGLAGGQ-FGFATGSVIQADGGLSIG 278 (280)
T ss_dssp ----------CCBCHHHHHHHHHHHHTST-TGGGTTCEEEESTTCC--
T ss_pred HHhhcCCCcCCcCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCcccC
Confidence 2222 566788999999999999999764 789999999999998764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=337.62 Aligned_cols=242 Identities=24% Similarity=0.272 Sum_probs=200.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.++||++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.... .++.++++|++|+++++++++++
T Consensus 22 ~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~ 99 (267)
T 3u5t_A 22 SMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATA 99 (267)
T ss_dssp -----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999998 556677777777765543 36888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ + .|+||+
T Consensus 100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~--~g~iv~ 159 (267)
T 3u5t_A 100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLR------------------V--GGRIIN 159 (267)
T ss_dssp HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEE------------------E--EEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------h--CCeEEE
Confidence 99999999999999987543 5678999999999999999999999999885 2 489999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... +.....+
T Consensus 160 isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~ 225 (267)
T 3u5t_A 160 MSTSQVGLLH------------PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKS--DEVRDRF 225 (267)
T ss_dssp ECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------CHHHH
T ss_pred EeChhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCC--HHHHHHH
Confidence 9999887764 6688999999999999999999999999999999999999999755321 2233445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
....|.+++.+|+|+|++++||+++ ...++||++|.+|||.
T Consensus 226 ~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i~vdGG~ 266 (267)
T 3u5t_A 226 AKLAPLERLGTPQDIAGAVAFLAGP-DGAWVNGQVLRANGGI 266 (267)
T ss_dssp HTSSTTCSCBCHHHHHHHHHHHHST-TTTTCCSEEEEESSSC
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCc-cccCccCCEEEeCCCc
Confidence 5566778899999999999999965 4789999999999985
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=337.97 Aligned_cols=249 Identities=24% Similarity=0.268 Sum_probs=205.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|++++| +.+.+++..+++.... +.++.++++|++|.++++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999 6677777777765432 347889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|+ +++.|+||+
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 160 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMK------------------KKGWGRIIN 160 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEE
Confidence 99999999999999986543 5678999999999999999999999999998 446799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-------
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD------- 366 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~------- 366 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+......
T Consensus 161 isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~ 228 (281)
T 3v2h_A 161 IASAHGLVAS------------PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGIT 228 (281)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----------------
T ss_pred ECCcccccCC------------CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCC
Confidence 9999988765 667899999999999999999999999999999999999999876532110
Q ss_pred --hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 --SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+.+....|.+++.+|+|+|++++||++++ ..++||+.|.+|||+..
T Consensus 229 ~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~-a~~itG~~i~vdGG~~~ 280 (281)
T 3v2h_A 229 EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDD-AAQITGTHVSMDGGWTA 280 (281)
T ss_dssp -----------CCTTCSCBCHHHHHHHHHHHHSSG-GGGCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCC-cCCCCCcEEEECCCccC
Confidence 001112334456778999999999999999664 78999999999999754
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=336.26 Aligned_cols=247 Identities=21% Similarity=0.235 Sum_probs=196.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998887776665 23678889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 218 ENKKINVLINNAGVSGCR------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.++.... ..+.|+|
T Consensus 78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~------------~~~~g~i 145 (257)
T 3tpc_A 78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDA------------DGERGVI 145 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCT------------TSCCEEE
T ss_pred HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccC------------CCCCeEE
Confidence 999999999999987543 2567899999999999999999999999997321000 1357899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... ...+
T Consensus 146 v~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---~~~~ 210 (257)
T 3tpc_A 146 VNTASIAAFDGQ------------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQ---DVQD 210 (257)
T ss_dssp EEECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------
T ss_pred EEEechhhccCC------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCH---HHHH
Confidence 999999998775 5688999999999999999999999999999999999999999866532 2223
Q ss_pred HHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 372 VVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 372 ~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+....|. +++.+|+|+|++++||+++ .++||+.|.+|||...++
T Consensus 211 ~~~~~~p~~~r~~~~~dva~~v~~l~s~---~~itG~~i~vdGG~~~~~ 256 (257)
T 3tpc_A 211 ALAASVPFPPRLGRAEEYAALVKHICEN---TMLNGEVIRLDGALRMAP 256 (257)
T ss_dssp ---CCSSSSCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCC--
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHccc---CCcCCcEEEECCCccCCC
Confidence 33445555 7889999999999999965 589999999999988754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=328.74 Aligned_cols=243 Identities=23% Similarity=0.320 Sum_probs=215.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.++
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988888876543 47889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|. +++.|+||++||
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~g~iv~isS 141 (247)
T 3lyl_A 80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMM------------------KKRWGRIISIGS 141 (247)
T ss_dssp TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCeEEEEEcc
Confidence 99999999999987543 5678999999999999999999999999998 446689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+... +.....+...
T Consensus 142 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~ 206 (247)
T 3lyl_A 142 VVGSAGN------------PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT---DEQKSFIATK 206 (247)
T ss_dssp THHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC---HHHHHHHHTT
T ss_pred hhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc---HHHHHHHhhc
Confidence 9988765 668899999999999999999999999999999999999999987653 2333334455
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.+++.+|+|+|++++||++++ ..+++|+.|.+|||+..
T Consensus 207 ~~~~~~~~~~dva~~i~~l~s~~-~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 207 IPSGQIGEPKDIAAAVAFLASEE-AKYITGQTLHVNGGMYM 246 (247)
T ss_dssp STTCCCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSSC
T ss_pred CCCCCCcCHHHHHHHHHHHhCCC-cCCccCCEEEECCCEec
Confidence 67778899999999999999654 78899999999999764
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=335.90 Aligned_cols=245 Identities=27% Similarity=0.311 Sum_probs=210.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+ +.+++..+++... +.++.++++|++|.++++++.+. .
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~-~ 101 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG--GGSAEAVVADLADLEGAANVAEE-L 101 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT--TCEEEEEECCTTCHHHHHHHHHH-H
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHH-H
Confidence 568999999999999999999999999999999999976 4556666666543 34788999999999999999554 4
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++
T Consensus 102 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~IV~i 163 (273)
T 3uf0_A 102 AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAML------------------AHGSGRIVTI 163 (273)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEEEE
Confidence 5669999999999987543 5678999999999999999999999999998 4467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++...... .+.....+.
T Consensus 164 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~ 230 (273)
T 3uf0_A 164 ASMLSFQGG------------RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRA-DDERAAEIT 230 (273)
T ss_dssp CCGGGTSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-SHHHHHHHH
T ss_pred cchHhcCCC------------CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhccc-CHHHHHHHH
Confidence 999988765 6688999999999999999999999999999999999999998765432 123334455
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...|.+++.+|+|+|++++||+++ ...++||+.|.+|||...
T Consensus 231 ~~~p~~r~~~pedva~~v~~L~s~-~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 231 ARIPAGRWATPEDMVGPAVFLASD-AASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp HHSTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred hcCCCCCCCCHHHHHHHHHHHhCc-hhcCCcCCEEEECcCccC
Confidence 667788999999999999999965 478999999999999764
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=334.89 Aligned_cols=244 Identities=25% Similarity=0.283 Sum_probs=208.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|+++++ +.+.+++..+++.... .++.++++|++|.++++++++++
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHH
Confidence 55789999999999999999999999999999999876 4566777777775543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|. + .|+||+
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~--~g~iv~ 150 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLT------------------E--GGRIVL 150 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCC------------------T--TCEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------c--CCeEEE
Confidence 99999999999999987543 5678999999999999999999999999985 2 589999
Q ss_pred EcCccc-ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---------
Q psy12836 294 VSSVAH-KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------- 363 (429)
Q Consensus 294 vSS~~~-~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------- 363 (429)
+||.++ ..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+...
T Consensus 151 isS~~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~ 218 (270)
T 3is3_A 151 TSSNTSKDFSV------------PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTS 218 (270)
T ss_dssp ECCTTTTTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGG
T ss_pred EeCchhccCCC------------CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccc
Confidence 999873 3332 568899999999999999999999999999999999999999875311
Q ss_pred CCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+...+......|.+++.+|+|+|++++||+++ ...++||+.|.+|||.
T Consensus 219 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~-~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 219 YTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSK-EGEWVNGKVLTLDGGA 269 (270)
T ss_dssp SCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTC
T ss_pred cchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC-ccCCccCcEEEeCCCC
Confidence 11122333344566778899999999999999965 4789999999999996
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=333.53 Aligned_cols=250 Identities=22% Similarity=0.283 Sum_probs=212.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++.++++|++|.++++++++++.
T Consensus 8 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999888888877665434578899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|+ +++.|+||+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~ 149 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMR------------------EQGSGMVVN 149 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEE
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEE
Confidence 999999999999998643 25678899999999999999999999999997 345699999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-----CCCchh
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-----SYYDSW 368 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-----~~~~~~ 368 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+.. ......
T Consensus 150 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 217 (267)
T 1iy8_A 150 TASVGGIRGI------------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRK 217 (267)
T ss_dssp ECCGGGTSBC------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHH
T ss_pred EcchhhccCC------------CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhh
Confidence 9999887664 56789999999999999999999999999999999999999986532 110010
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.+....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 218 ~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 218 AAEEFIQVNPSKRYGEAPEIAAVVAFLLSDD-ASYVNATVVPIDGGQSA 265 (267)
T ss_dssp HHHHHHTTCTTCSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTTTT
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHcCcc-ccCCCCCEEEECCCccc
Confidence 1112334456678899999999999999654 67899999999999754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=335.27 Aligned_cols=247 Identities=23% Similarity=0.276 Sum_probs=210.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....++..+..+.+|+++.++++++++
T Consensus 5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 81 (267)
T 3t4x_A 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--- 81 (267)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH---
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH---
Confidence 45789999999999999999999999999999999999999999999998877666788899999999999877664
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|+|+ +++.|+||++
T Consensus 82 -~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~~~~g~iv~i 142 (267)
T 3t4x_A 82 -KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMI------------------ERKEGRVIFI 142 (267)
T ss_dssp -HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTEEEEEEE
T ss_pred -hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCCEEEEE
Confidence 579999999999987543 5678999999999999999999999999998 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYD 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~ 366 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+... ...
T Consensus 143 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 210 (267)
T 3t4x_A 143 ASEAAIMPS------------QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTI 210 (267)
T ss_dssp CCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCH
T ss_pred cchhhccCC------------CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCH
Confidence 999988764 668899999999999999999999999999999999999999754321 001
Q ss_pred hhHHHHHHh----HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 367 SWLSTVVLK----PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 367 ~~~~~~~~~----~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+...+.+.. ..+.+++.+|+|+|++++||+++ .+.++||+.|.+|||...+
T Consensus 211 ~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~-~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 211 EEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSP-LSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp HHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSG-GGTTCCSCEEEESTTCSCS
T ss_pred HHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCc-cccCccCCeEEECCCcccc
Confidence 111122211 12457889999999999999965 4789999999999997654
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=337.21 Aligned_cols=248 Identities=21% Similarity=0.256 Sum_probs=207.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-------------ChhHHHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-------------DLDKCEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-------------~~~~~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
+.+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~ 87 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVR 87 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTT
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCC
Confidence 55789999999999999999999999999999999998 6777887777775543 47889999999
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhh
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYY 281 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 281 (429)
|.++++++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|++
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-------------- 153 (280)
T 3pgx_A 88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIE-------------- 153 (280)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh--------------
Confidence 99999999999999999999999999987543 56789999999999999999999999999983
Q ss_pred hcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 282 ~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
+...|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.
T Consensus 154 ---~~~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~ 218 (280)
T 3pgx_A 154 ---AGNGGSIVVVSSSAGLKAT------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP 218 (280)
T ss_dssp ---HCSCEEEEEECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH
T ss_pred ---cCCCCEEEEEcchhhccCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch
Confidence 2236899999999988765 6688999999999999999999999999999999999999998653
Q ss_pred CCCC-----chhHHHH--HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 362 SSYY-----DSWLSTV--VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 362 ~~~~-----~~~~~~~--~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.... .+..... .....+. ++.+|+|+|++++||++++ ..++||+.|.+|||...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 279 (280)
T 3pgx_A 219 EAMMEIFARHPSFVHSFPPMPVQPN-GFMTADEVADVVAWLAGDG-SGTLTGTQIPVDKGALK 279 (280)
T ss_dssp HHHHHHHHHCGGGGGGSCCBTTBCS-SCBCHHHHHHHHHHHHSGG-GTTCSSCEEEESTTGGG
T ss_pred hhhhhhhhcCchhhhhhhhcccCCC-CCCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCccC
Confidence 1100 0000000 0011222 5779999999999999764 78999999999999753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=331.91 Aligned_cols=242 Identities=24% Similarity=0.261 Sum_probs=209.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|++++++ .+++++..+++.... .++.++++|++|+++++++++++
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999665 466777777775543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|+ +.|+||+
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~--------------------~~g~iv~ 163 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLG--------------------DGGRIIT 163 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCC--------------------TTCEEEE
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHh--------------------cCCEEEE
Confidence 99999999999999986543 5678999999999999999999999999885 3589999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+. +++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... ..+..
T Consensus 164 isS~~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~----~~~~~ 228 (271)
T 3v2g_A 164 IGSNLAELVP-----------WPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD----HAEAQ 228 (271)
T ss_dssp ECCGGGTCCC-----------STTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS----SHHHH
T ss_pred EeChhhccCC-----------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch----hHHHH
Confidence 9998765542 25688999999999999999999999999999999999999999765432 22334
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+.+++.+|+|+|++++||+++ ...++||+.|.+|||..
T Consensus 229 ~~~~~~~r~~~pedvA~~v~fL~s~-~~~~itG~~i~vdGG~~ 270 (271)
T 3v2g_A 229 RERIATGSYGEPQDIAGLVAWLAGP-QGKFVTGASLTIDGGAN 270 (271)
T ss_dssp HHTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTT
T ss_pred HhcCCCCCCCCHHHHHHHHHHHhCc-ccCCccCCEEEeCcCcc
Confidence 5566778899999999999999965 47899999999999974
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=329.76 Aligned_cols=249 Identities=24% Similarity=0.274 Sum_probs=208.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 93 (273)
T 1ae1_A 16 RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVA 93 (273)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998888877775543 368889999999999999999999
Q ss_pred HhC-CCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KEN-KKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~-g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+.+ +++|+||||||+... ..+.+.++|++++++|+.|+++++++++|.|+ +++.|+||+
T Consensus 94 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~------------------~~~~g~iv~ 155 (273)
T 1ae1_A 94 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLK------------------ASQNGNVIF 155 (273)
T ss_dssp HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTSEEEEE
T ss_pred HHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 999 999999999998643 35678899999999999999999999999997 345689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~ 370 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++....... .+...
T Consensus 156 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 223 (273)
T 1ae1_A 156 LSSIAGFSAL------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEI 223 (273)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHH
T ss_pred EcCHhhcCCC------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHH
Confidence 9999887664 56789999999999999999999999999999999999999987543210 12222
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+....|.+++.+|+|+|++++||+++ ...+++|+.|.+|||....
T Consensus 224 ~~~~~~~p~~r~~~p~dvA~~v~~l~s~-~~~~~tG~~i~vdGG~~~~ 270 (273)
T 1ae1_A 224 DNFIVKTPMGRAGKPQEVSALIAFLCFP-AASYITGQIIWADGGFTAN 270 (273)
T ss_dssp HHHHHHSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCcCCCEEEECCCcccC
Confidence 3344456667889999999999999965 4789999999999997653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=332.96 Aligned_cols=248 Identities=24% Similarity=0.230 Sum_probs=197.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|+++ .|+.+..++..+++.... .++.++++|++|.++++++++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999998 666777777777775543 36788999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+++|++|+||||||... +..+.+.++|++++++|+.|+++++++++|+|+ + .|+||
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~--~g~iv 140 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMA------------------K--GGAIV 140 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------E--EEEEE
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------c--CCEEE
Confidence 999999999999999762 235778999999999999999999999999885 2 58999
Q ss_pred EEcCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 293 NVSSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 293 ~vSS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
++||.++. .+. ++..+|++||+|+++|+++++.|+++. |+||+|+||+|+|++.+.... +...+
T Consensus 141 ~isS~~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~-I~vn~v~PG~v~T~~~~~~~~--~~~~~ 205 (259)
T 3edm_A 141 TFSSQAGRDGGG------------PGALAYATSKGAVMTFTRGLAKEVGPK-IRVNAVCPGMISTTFHDTFTK--PEVRE 205 (259)
T ss_dssp EECCHHHHHCCS------------TTCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCBCC---------------
T ss_pred EEcCHHhccCCC------------CCcHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCcCcccccccC--hHHHH
Confidence 99999887 343 567899999999999999999999987 999999999999999876532 22333
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~ 422 (429)
.+....+.++..+|+|+|++++||+++ ...++||++|.+|||..+.....
T Consensus 206 ~~~~~~p~~r~~~pedva~~v~~L~s~-~~~~itG~~i~vdGg~~~~~~~~ 255 (259)
T 3edm_A 206 RVAGATSLKREGSSEDVAGLVAFLASD-DAAYVTGACYDINGGVLFSEGHH 255 (259)
T ss_dssp ---------CCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESBCSSBC----
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHcCc-cccCccCCEEEECCCcCCCCCCC
Confidence 445566778899999999999999965 47899999999999988776543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=338.25 Aligned_cols=247 Identities=17% Similarity=0.213 Sum_probs=202.0
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC---hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD---LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~---~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.++++|++|++++++++
T Consensus 5 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 5 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp CCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHH
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999999999999999999998764 45666667766544 347899999999999999999
Q ss_pred HHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +.|+
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~--------------------~~g~ 142 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN--------------------PNGH 142 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEE--------------------EEEE
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhc--------------------CCCE
Confidence 99999999999999999987543 5678999999999999999999999999873 3589
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... +...
T Consensus 143 iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~ 208 (262)
T 3ksu_A 143 IITIATSLLAAYT------------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQET--KEST 208 (262)
T ss_dssp EEEECCCHHHHHH------------CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-------
T ss_pred EEEEechhhccCC------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCc--hHHH
Confidence 9999999887764 5577899999999999999999999999999999999999999765432 1122
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
..+....+.+++.+|+|+|++++||+++ ..++||+.|.+|||......
T Consensus 209 ~~~~~~~~~~r~~~pedvA~~v~~L~s~--~~~itG~~i~vdGg~~~~~~ 256 (262)
T 3ksu_A 209 AFHKSQAMGNQLTKIEDIAPIIKFLTTD--GWWINGQTIFANGGYTTREG 256 (262)
T ss_dssp -------CCCCSCCGGGTHHHHHHHHTT--TTTCCSCEEEESTTCCCC--
T ss_pred HHHHhcCcccCCCCHHHHHHHHHHHcCC--CCCccCCEEEECCCccCCCc
Confidence 3334456667899999999999999966 67999999999999877554
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=333.79 Aligned_cols=245 Identities=20% Similarity=0.182 Sum_probs=207.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|+++.++++++++++.++
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999998887765543 236888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 219 NKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+ + +|+|
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~------------------~-~g~i 137 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVS------------------S-RGSV 137 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCEE
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHh------------------c-CCeE
Confidence 99999999999986432 23345789999999999999999999999973 2 3899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC------
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY------ 365 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~------ 365 (429)
|++||.++..+. ++..+|++||+|+++|+++|+.|+++. |+||+|+||+|+|+|.......
T Consensus 138 v~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~ 204 (281)
T 3zv4_A 138 VFTISNAGFYPN------------GGGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQSI 204 (281)
T ss_dssp EEECCGGGTSSS------------SSCHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC------
T ss_pred EEEecchhccCC------------CCCchhHHHHHHHHHHHHHHHHHhcCC-CEEEEEECCcCcCCcccccccccccccc
Confidence 999999988764 567899999999999999999999987 9999999999999987542110
Q ss_pred -chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 366 -DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
.....+.+....|.+++.+|+|+|++++||++++.+.++||+.|.+|||+..+..
T Consensus 205 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~~~~~ 260 (281)
T 3zv4_A 205 SSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMGVRGF 260 (281)
T ss_dssp --CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGGGCCS
T ss_pred cchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCccccc
Confidence 0112344555677889999999999999999867788999999999999987654
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=326.50 Aligned_cols=242 Identities=25% Similarity=0.359 Sum_probs=209.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++|+++++++++++.+
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999 8888888777775532 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~is 140 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMM------------------RQRHGRIVNIA 140 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEEC
Confidence 999999999999986533 5678899999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||+++|++.+... +.....+..
T Consensus 141 S~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~ 205 (246)
T 2uvd_A 141 SVVGVTGN------------PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD---ENIKAEMLK 205 (246)
T ss_dssp CTHHHHCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC---TTHHHHHHH
T ss_pred CHHhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC---HHHHHHHHh
Confidence 99887764 567899999999999999999999999999999999999999876542 112223334
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..|.+++.+|+|+|++++|++++ ...+++|+.+.+|||..
T Consensus 206 ~~p~~~~~~~~dvA~~~~~l~s~-~~~~~tG~~~~vdgG~~ 245 (246)
T 2uvd_A 206 LIPAAQFGEAQDIANAVTFFASD-QSKYITGQTLNVDGGMV 245 (246)
T ss_dssp TCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSC
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc-hhcCCCCCEEEECcCcc
Confidence 45667889999999999999965 46789999999999964
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=326.05 Aligned_cols=238 Identities=22% Similarity=0.258 Sum_probs=206.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeC--CCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL--ASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl--s~~~sv~~~~~~ 214 (429)
...++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... .++.++.+|+ +|.+++++++++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHH
Confidence 5578999999999999999999999999999999999999999988888866543 2567889999 999999999999
Q ss_pred HHHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+++|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|+|+ +++.|+|
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~------------------~~~~g~i 147 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLL------------------KSDAGSL 147 (252)
T ss_dssp HHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TSSSCEE
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------HCCCCEE
Confidence 9999999999999999853 336678999999999999999999999999998 5677999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++|+.|+++. |+||+|+||+++|++......
T Consensus 148 v~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~-irvn~v~PG~v~t~~~~~~~~------- 207 (252)
T 3f1l_A 148 VFTSSSVGRQGR------------ANWGAYAASKFATEGMMQVLADEYQQR-LRVNCINPGGTRTAMRASAFP------- 207 (252)
T ss_dssp EEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEECCSBSSHHHHHHCT-------
T ss_pred EEECChhhccCC------------CCCchhHHHHHHHHHHHHHHHHHhcCC-cEEEEEecCcccCchhhhhCC-------
Confidence 999999988764 668899999999999999999999987 999999999999998643211
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+..++.+|+|+|++++||+++ .+.++||+.|.+|||..+.
T Consensus 208 ----~~~~~~~~~p~dva~~~~~L~s~-~~~~itG~~i~vdgG~~~~ 249 (252)
T 3f1l_A 208 ----TEDPQKLKTPADIMPLYLWLMGD-DSRRKTGMTFDAQPGRKPG 249 (252)
T ss_dssp ----TCCGGGSBCTGGGHHHHHHHHSG-GGTTCCSCEEESSCC----
T ss_pred ----ccchhccCCHHHHHHHHHHHcCc-cccCCCCCEEEeCCCcCCC
Confidence 01123567999999999999965 4789999999999998664
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=327.50 Aligned_cols=251 Identities=24% Similarity=0.294 Sum_probs=201.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999988877765 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++++|+||||||+.... ...+.++|++++++|+.+++++++.++|+|.++.. +...++||+
T Consensus 79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--------------~~~~~~iv~ 144 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGA--------------KGQECVILN 144 (261)
T ss_dssp HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH--------------TTCCEEEEE
T ss_pred HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--------------CCCCeEEEE
Confidence 9999999999999986522 45688999999999999999999999999985421 234689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-CchhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-YDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~~~ 372 (429)
+||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+++|++.+.... ..+.....
T Consensus 145 isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 212 (261)
T 3n74_A 145 VASTGAGRPR------------PNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKK 212 (261)
T ss_dssp ECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------
T ss_pred eCchhhcCCC------------CCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHH
Confidence 9999887664 5678899999999999999999999999999999999999999765421 12223334
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+....+.+++.+|+|+|++++||+++ ...++||+.|.+|||.....
T Consensus 213 ~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 213 FRDSIPMGRLLKPDDLAEAAAFLCSP-QASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp ----CTTSSCCCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTTTC--
T ss_pred HhhcCCcCCCcCHHHHHHHHHHHcCC-cccCcCCcEEEecCCcccCC
Confidence 45566778899999999999999965 47899999999999987753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=327.26 Aligned_cols=249 Identities=24% Similarity=0.281 Sum_probs=208.3
Q ss_pred CCCCCCCCCEEEEEcCC-CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGAN-TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 135 ~~~~~l~gK~vLITGas-sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
....+++||++|||||+ +|||+++|++|+++|++|++++|+.+++++..+++.... ..++.++++|++|.++++++++
T Consensus 15 ~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 15 DGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp CCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHH
Confidence 33567899999999997 599999999999999999999999999998888885543 3478999999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.++++++|+||||||+.... .+.+.++|++++++|+.+++++++.++|+|++ ....++|
T Consensus 94 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----------------~~~~~~i 156 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRG-----------------VDHGGVI 156 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-----------------SSCCEEE
T ss_pred HHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----------------cCCCeEE
Confidence 9999999999999999986543 56789999999999999999999999999983 2267899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|++.++.|++++||+||+|+||+++|++.+.... +....
T Consensus 157 v~~sS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~ 222 (266)
T 3o38_A 157 VNNASVLGWRAQ------------HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--SELLD 222 (266)
T ss_dssp EEECCGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---------------
T ss_pred EEeCCHHHcCCC------------CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--HHHHH
Confidence 999999987764 6788999999999999999999999999999999999999999766432 22333
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+....+.+++.+|+|+|++++||+++ ...++||++|.+|||+.
T Consensus 223 ~~~~~~~~~r~~~~~dva~~i~~l~s~-~~~~~tG~~i~vdgG~~ 266 (266)
T 3o38_A 223 RLASDEAFGRAAEPWEVAATIAFLASD-YSSYMTGEVVSVSSQRA 266 (266)
T ss_dssp ----CCTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESSCCC
T ss_pred HHHhcCCcCCCCCHHHHHHHHHHHcCc-cccCccCCEEEEcCCcC
Confidence 344556678899999999999999965 46899999999999963
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=334.62 Aligned_cols=249 Identities=14% Similarity=0.058 Sum_probs=212.4
Q ss_pred CCCCCCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 135 ~~~~~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
....+++||++|||||+| |||+++|++|+++|++|++++|+.+..+...+.. ...+ .+.+++||++|.+++++++
T Consensus 23 ~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~-~~~~--~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 23 RTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLA-ESLG--VKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp CCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH-HHHT--CCEEEECCTTCHHHHHHHH
T ss_pred cchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH-HhcC--CeEEEEcCCCCHHHHHHHH
Confidence 346688999999999997 9999999999999999999999976555444333 3333 3578899999999999999
Q ss_pred HHHHHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 213 EEVKKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
+++.+++|++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|.|+ +
T Consensus 100 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~- 160 (296)
T 3k31_A 100 KVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMT------------------N- 160 (296)
T ss_dssp HHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCT------------------T-
T ss_pred HHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------c-
Confidence 999999999999999999874 335678999999999999999999999999875 3
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~ 366 (429)
.|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.... .
T Consensus 161 -~g~IV~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-~ 226 (296)
T 3k31_A 161 -GGSILTLSYYGAEKVV------------PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISD-F 226 (296)
T ss_dssp -CEEEEEEECGGGTSCC------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHH-H
T ss_pred -CCEEEEEEehhhccCC------------CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccc-h
Confidence 6899999999987764 5678999999999999999999999999999999999999998766532 1
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+..........|.+++.+|+|+|++++||+++ .+.++||+.|.+|||+.....
T Consensus 227 ~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~-~a~~itG~~i~vdGG~~~~~~ 279 (296)
T 3k31_A 227 HYILTWNKYNSPLRRNTTLDDVGGAALYLLSD-LGRGTTGETVHVDCGYHVVGM 279 (296)
T ss_dssp HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCSS
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC-ccCCccCCEEEECCCccccCC
Confidence 22233445566778899999999999999965 478999999999999988754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=332.94 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=208.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHH---------
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQE--------- 206 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~--------- 206 (429)
+.+++||++|||||++|||+++|++|+++|++|++++ |+.+++++..+++.... +.++.++++|+++.+
T Consensus 4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-CCeeEEEEeecCCccccccccccc
Confidence 4568999999999999999999999999999999999 99998888888775332 246889999999999
Q ss_pred --------HHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCC--------------HHHHHhhhcchhHHHHHHHHHHH
Q psy12836 207 --------SIRAFAEEVKKENKKINVLINNAGVSGCR--KMLT--------------EEKIELQLGVNHMGHFLLTMLLL 262 (429)
Q Consensus 207 --------sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~--------------~~~~~~~~~vN~~g~~~l~~~~~ 262 (429)
+++++++++.+++|++|+||||||+.... .+.+ .++|++++++|+.|+++++++++
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999986432 4556 88999999999999999999999
Q ss_pred HHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy12836 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGT 342 (429)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~ 342 (429)
|.|.++.... ....|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++
T Consensus 163 ~~m~~~~~~~------------~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~ 218 (291)
T 1e7w_A 163 HRVAGTPAKH------------RGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPL 218 (291)
T ss_dssp HHHHTSCGGG------------SCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhcCCCC------------CCCCcEEEEEechhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 9997321000 1116899999999887664 668899999999999999999999999
Q ss_pred CeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 343 GITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 343 gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
||+||+|+||+|+|++ + .. +.....+....|.+ ++.+|+|+|++++||+++ ...++||+++.+|||+...+
T Consensus 219 gI~vn~v~PG~v~T~~-~-~~---~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~-~~~~itG~~i~vdGG~~~~~ 290 (291)
T 1e7w_A 219 QIRVNGVGPGLSVLVD-D-MP---PAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSS-KAKYITGTCVKVDGGYSLTR 290 (291)
T ss_dssp TEEEEEEEESSBCCGG-G-SC---HHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCC
T ss_pred CeEEEEEeeCCccCCc-c-CC---HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCC-cccCccCcEEEECCCccccc
Confidence 9999999999999999 4 31 22333344445666 889999999999999975 47899999999999987643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=328.90 Aligned_cols=250 Identities=22% Similarity=0.283 Sum_probs=206.0
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC------------hhHHHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD------------LDKCEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~------------~~~~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.... .++.++++|++
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 84 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVR 84 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTT
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 3567999999999999999999999999999999999987 677777766665543 37889999999
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
|+++++++++++.+++|++|+||||||+..... +.++|++++++|+.|+++++++++|+|.+
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---------------- 146 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDVNLTGVYHTIKVAIPTLVK---------------- 146 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHHHHTHHHHHHHHHHHHHHHH----------------
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------------
Confidence 999999999999999999999999999875433 68999999999999999999999999974
Q ss_pred ccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC
Q psy12836 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363 (429)
Q Consensus 284 ~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~ 363 (429)
+...|+||++||.++..+... ..++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.....
T Consensus 147 -~~~~g~iv~isS~~~~~~~~~--------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~ 217 (278)
T 3sx2_A 147 -QGTGGSIVLISSSAGLAGVGS--------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEF 217 (278)
T ss_dssp -HCSCEEEEEECCGGGTSCCCC--------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHH
T ss_pred -CCCCcEEEEEccHHhcCCCcc--------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhh
Confidence 224689999999998765311 11456789999999999999999999999999999999999999876421
Q ss_pred CCchhHHHH---------HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 364 YYDSWLSTV---------VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 364 ~~~~~~~~~---------~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. ..++... +....+ .++.+|+|+|++++||+++. ..++||+.|.+|||+..
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~-~~~itG~~i~vdGG~~~ 277 (278)
T 3sx2_A 218 T-REWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQ-ARYITGVTLPVDAGFLN 277 (278)
T ss_dssp H-HHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTTTT
T ss_pred H-HHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcc-cccccCCEEeECCCccc
Confidence 1 0111110 011123 46779999999999999654 78999999999999764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=331.23 Aligned_cols=247 Identities=15% Similarity=0.094 Sum_probs=206.7
Q ss_pred CCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+.+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+ ..+++....+ ++.+++||++|.+++++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKK-RVEPLAEELG--AFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHH-HHHHHHHHHT--CEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhcC--CceEEECCCCCHHHHHHHHHH
Confidence 457899999999999 55999999999999999999999965433 3344444333 578899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 215 VKKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+.+++|++|+||||||+.. +..+.+.++|++.+++|+.+++++++.++|+|+ + .
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~--~ 162 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMA------------------D--G 162 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTT------------------T--C
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------C--C
Confidence 9999999999999999864 235678999999999999999999999999985 2 6
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.... .+.
T Consensus 163 g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~ 229 (293)
T 3grk_A 163 GSILTLTYYGAEKVM------------PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGD-FRY 229 (293)
T ss_dssp EEEEEEECGGGTSBC------------TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CC-HHH
T ss_pred CEEEEEeehhhccCC------------CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccc-hHH
Confidence 899999999987764 5688999999999999999999999999999999999999999776542 123
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
.........+.+++.+|+|+|++++||+++ ...++||++|.+|||+.....
T Consensus 230 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i~vdGG~~~~~~ 280 (293)
T 3grk_A 230 ILKWNEYNAPLRRTVTIDEVGDVGLYFLSD-LSRSVTGEVHHADSGYHVIGM 280 (293)
T ss_dssp HHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGBCC
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCCcceEEEECCCcccCCC
Confidence 334455667778899999999999999965 478999999999999987654
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=330.30 Aligned_cols=244 Identities=23% Similarity=0.258 Sum_probs=209.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999998888877775442 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccC-C--CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVS-G--CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~-~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|++|+||||||+. . +..+.+.++|++.+++|+.|++++++.++|.|. +++.|+||++
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~i 142 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMI------------------TQNYGRIVNT 142 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 999999999999986 3 235678999999999999999999999999997 3456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC------------
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS------------ 362 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~------------ 362 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++....
T Consensus 143 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 210 (262)
T 1zem_A 143 ASMAGVKGP------------PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQY 210 (262)
T ss_dssp CCHHHHSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTT
T ss_pred cchhhccCC------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccc
Confidence 999887764 56789999999999999999999999999999999999999986541
Q ss_pred CCCchh-HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 363 SYYDSW-LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 363 ~~~~~~-~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
....+. ..+.+....|.+++.+|+|+|++++||++++ ..++||+.+.+|||
T Consensus 211 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~itG~~i~vdGG 262 (262)
T 1zem_A 211 FSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDD-SSFMTGVNLPIAGG 262 (262)
T ss_dssp SCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGG-GTTCCSCEEEESCC
T ss_pred cccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCch-hcCcCCcEEecCCC
Confidence 110122 2233334466788999999999999999754 78999999999987
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=328.95 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=205.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....++ .++.++++|++|.++++++++++.
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998888766433 578899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv~is 144 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMK------------------VQKNGYIFNVA 144 (250)
T ss_dssp HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hCCCeEEEEEc
Confidence 9999999999999986433 3567899999999999999999999999998 44679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+....
T Consensus 145 S~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~----------- 201 (250)
T 3nyw_A 145 SRAAKYGF------------ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGT----------- 201 (250)
T ss_dssp C-------------------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTTC-----------
T ss_pred cHHhcCCC------------CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcCC-----------
Confidence 99988753 4478999999999999999999999999999999999999998754331
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
..+..++.+|+|+|++++||++++....++|..|.+||+...-+
T Consensus 202 ~~~~~~~~~p~dva~~v~~l~s~~~~~~~~~~~i~vd~~~~~~~ 245 (250)
T 3nyw_A 202 PFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSIIEGH 245 (250)
T ss_dssp CSCGGGSBCHHHHHHHHHHHHTSCTTEECCEEEEEEHHHHHC--
T ss_pred CcccccCCCHHHHHHHHHHHHcCCCceEeeEEEEEeeccccccc
Confidence 12335678999999999999998877888999999999876544
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=326.56 Aligned_cols=247 Identities=23% Similarity=0.312 Sum_probs=211.4
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
++..++++|++|||||++|||+++|++|+++|++|++++ |+.++.++..+++.... .++.++++|++|.++++++++
T Consensus 6 ~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~ 83 (256)
T 3ezl_A 6 HHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFD 83 (256)
T ss_dssp -------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHH
Confidence 345678999999999999999999999999999999988 67777777666665443 368889999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.++++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|. +++.|+|
T Consensus 84 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~i 145 (256)
T 3ezl_A 84 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMV------------------ERGWGRI 145 (256)
T ss_dssp HHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEE
Confidence 9999999999999999987543 5678999999999999999999999999998 4466999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+... +....
T Consensus 146 v~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~ 210 (256)
T 3ezl_A 146 INISSVNGQKGQ------------FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR---PDVLE 210 (256)
T ss_dssp EEECCCCGGGSC------------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHH
T ss_pred EEEcchhhccCC------------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccC---HHHHH
Confidence 999999988765 668899999999999999999999999999999999999999987653 33444
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+.+++.+|+|+|++++||+++ +..+++|+.|.+|||...
T Consensus 211 ~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 211 KIVATIPVRRLGSPDEIGSIVAWLASE-ESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp HHHHHSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSCC
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCC-cccCCcCcEEEECCCEeC
Confidence 455667778899999999999999965 468999999999999764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=328.77 Aligned_cols=249 Identities=24% Similarity=0.349 Sum_probs=210.7
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
++..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++++|++|.+++++++++
T Consensus 14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~ 92 (267)
T 1vl8_A 14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEA 92 (267)
T ss_dssp ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999998888777763322 23678899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|+ +++.|+||
T Consensus 93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~~~~g~iv 154 (267)
T 1vl8_A 93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLR------------------ESDNPSII 154 (267)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TCSSCEEE
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEE
Confidence 999999999999999986533 5678899999999999999999999999997 55679999
Q ss_pred EEcCcc-cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 293 NVSSVA-HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 293 ~vSS~~-~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
++||.+ +..+. ++..+|++||+++++|+++++.|++++||+||+|+||+++|++.+.... .+....
T Consensus 155 ~isS~~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~ 221 (267)
T 1vl8_A 155 NIGSLTVEEVTM------------PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-DPEKLD 221 (267)
T ss_dssp EECCGGGTCCCS------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-CHHHHH
T ss_pred EECCcchhccCC------------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc-ChHHHH
Confidence 999988 65543 5678999999999999999999999999999999999999998654211 122223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+....+.+++.+|+|+|++++||+++ ...+++|+.+.+|||+.
T Consensus 222 ~~~~~~p~~~~~~p~dvA~~v~~l~s~-~~~~itG~~i~vdGG~~ 265 (267)
T 1vl8_A 222 YMLKRIPLGRTGVPEDLKGVAVFLASE-EAKYVTGQIIFVDGGWT 265 (267)
T ss_dssp HHHHTCTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTGG
T ss_pred HHHhhCCCCCCcCHHHHHHHHHHHcCc-cccCCcCCeEEECCCCC
Confidence 333445667889999999999999975 46789999999999965
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=325.04 Aligned_cols=247 Identities=23% Similarity=0.281 Sum_probs=211.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++++|++|+++++++++++.
T Consensus 4 ~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (260)
T 2ae2_A 4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVA 81 (260)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999888877777544 3478889999999999999999999
Q ss_pred HhC-CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KEN-KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~-g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++ +++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||+
T Consensus 82 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~ 143 (260)
T 2ae2_A 82 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLK------------------ASERGNVVF 143 (260)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTSSEEEEE
T ss_pred HHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 999 8999999999986432 5678899999999999999999999999997 456799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH--
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST-- 371 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~-- 371 (429)
+||.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||+++|++.+..... +....
T Consensus 144 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~ 210 (260)
T 2ae2_A 144 ISSVSGALAV------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQD-PEQKENL 210 (260)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTS-HHHHHHH
T ss_pred EcchhhccCC------------CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccC-hhhHHHH
Confidence 9999887654 56789999999999999999999999999999999999999986542211 11111
Q ss_pred -HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 -VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 -~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+.+++.+|+|+|++++||+++ ...+++|+.+.+|||...
T Consensus 211 ~~~~~~~~~~~~~~~~dvA~~v~~l~s~-~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 211 NKLIDRCALRRMGEPKELAAMVAFLCFP-AASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp HHHHHTSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHcCc-cccCCCCCEEEECCCccc
Confidence 233445667789999999999999965 467899999999999754
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=328.80 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=194.2
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++++||++|||||++|||+++|++|+++|++|++++|+.+++.+...+. .+.++.+|++|+++++++++++
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-------GAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-------TCEEEECCTTSHHHHHHHHHHH
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-------CCeEEECCCCCHHHHHHHHHHH
Confidence 366789999999999999999999999999999999999987764443332 2678899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~------------------~~~~g~iv~i 155 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLT------------------ASEVADIVHI 155 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TSSSCEEEEE
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 99999999999999986543 4567789999999999999999999999998 5567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|+++ +|+||+|+||++.|++..... ....+.
T Consensus 156 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~-~Irvn~v~PG~v~t~~~~~~~-----~~~~~~ 217 (260)
T 3gem_A 156 SDDVTRKGS------------SKHIAYCATKAGLESLTLSFAARFAP-LVKVNGIAPALLMFQPKDDAA-----YRANAL 217 (260)
T ss_dssp CCGGGGTCC------------SSCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECTTCC------------------
T ss_pred CChhhcCCC------------CCcHhHHHHHHHHHHHHHHHHHHHCC-CCEEEEEeecccccCCCCCHH-----HHHHHH
Confidence 999988764 66889999999999999999999998 699999999999999754321 223344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...+.++..+|+|+|++++||+. ..++||+.|.+|||...+
T Consensus 218 ~~~p~~r~~~~edva~~v~~L~~---~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 218 AKSALGIEPGAEVIYQSLRYLLD---STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp --CCSCCCCCTHHHHHHHHHHHH---CSSCCSCEEEESTTTTTC
T ss_pred hcCCCCCCCCHHHHHHHHHHHhh---CCCCCCCEEEECCCcccC
Confidence 55667788999999999999993 468999999999998764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=329.45 Aligned_cols=244 Identities=22% Similarity=0.271 Sum_probs=206.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+ .+..+...+++... +.++.++++|++|.++++++++++
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHH
Confidence 667899999999999999999999999999999999994 55555555555443 347889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||+.... .+.+.+++++.+++|+.|++++++.++|.|+ +++.|+||+
T Consensus 102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 163 (271)
T 4iin_A 102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMS------------------KSRFGSVVN 163 (271)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHh------------------hcCCCEEEE
Confidence 99999999999999987644 4678899999999999999999999999998 446699999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+.... .....+
T Consensus 164 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~~~~ 228 (271)
T 4iin_A 164 VASIIGERGN------------MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD---ELKADY 228 (271)
T ss_dssp ECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------C
T ss_pred EechhhcCCC------------CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH---HHHHHH
Confidence 9999988765 6788999999999999999999999999999999999999999876532 222334
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||+.
T Consensus 229 ~~~~~~~~~~~p~dvA~~i~~l~s~~-~~~itG~~i~vdGG~~ 270 (271)
T 4iin_A 229 VKNIPLNRLGSAKEVAEAVAFLLSDH-SSYITGETLKVNGGLY 270 (271)
T ss_dssp GGGCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSC
T ss_pred HhcCCcCCCcCHHHHHHHHHHHhCCC-cCCCcCCEEEeCCCee
Confidence 45567778899999999999999654 6889999999999975
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=322.03 Aligned_cols=237 Identities=22% Similarity=0.238 Sum_probs=205.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ .+.++++|++|.++++++++++.++
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------CCEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999988877655443 1567899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++||
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~~~~g~iv~isS 136 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMR------------------EKNPGSIVLTAS 136 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------TTCCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEEEcc
Confidence 99999999999986433 5678899999999999999999999999997 556799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.+ ..+. ++..+|++||+++++|+++++.|++++||+||+|+||+++|++.+... +.....+...
T Consensus 137 ~~-~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~ 200 (245)
T 1uls_A 137 RV-YLGN------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP---EKVREKAIAA 200 (245)
T ss_dssp GG-GGCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC---HHHHHHHHHT
T ss_pred ch-hcCC------------CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC---HHHHHHHHhh
Confidence 88 6553 567899999999999999999999999999999999999999876532 2222333344
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.+++.+|+|+|++++|+++++ ..+++|+.+.+|||...
T Consensus 201 ~p~~~~~~~~dvA~~v~~l~s~~-~~~~tG~~~~vdgG~~~ 240 (245)
T 1uls_A 201 TPLGRAGKPLEVAYAALFLLSDE-SSFITGQVLFVDGGRTI 240 (245)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTT
T ss_pred CCCCCCcCHHHHHHHHHHHhCch-hcCCcCCEEEECCCccc
Confidence 56678899999999999999754 67899999999999765
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=330.16 Aligned_cols=245 Identities=18% Similarity=0.210 Sum_probs=194.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.++.. +++ +.++.++++|++|.++++++++.+.
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADL-----GDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHT-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hhc-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999765432 222 2368899999999999999999887
Q ss_pred HhCCCeeEEEEccccCCCC------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSGCR------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+ +|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+..... ...+..|+
T Consensus 76 ~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~----------~~~~~~g~ 144 (257)
T 3tl3_A 76 T-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVG----------PNAEERGV 144 (257)
T ss_dssp H-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC------------CCCCSEE
T ss_pred H-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccc----------cccCCCcE
Confidence 7 89999999999986422 2478899999999999999999999999997321000 00146789
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+... +...
T Consensus 145 iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~~ 209 (257)
T 3tl3_A 145 IINTASVAAFDGQ------------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLP---EEAR 209 (257)
T ss_dssp EEEECCCC--CCH------------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---C---HHHH
T ss_pred EEEEcchhhcCCC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhcc---HHHH
Confidence 9999999987764 457899999999999999999999999999999999999999987653 2333
Q ss_pred HHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+....+. +++.+|+|+|++++||+++ .++||+.|.+|||....
T Consensus 210 ~~~~~~~~~~~r~~~p~dva~~v~~l~s~---~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 210 ASLGKQVPHPSRLGNPDEYGALAVHIIEN---PMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp HHHHHTSSSSCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTC---
T ss_pred HHHHhcCCCCCCccCHHHHHHHHHHHhcC---CCCCCCEEEECCCccCC
Confidence 344455565 7889999999999999975 58999999999998765
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=326.36 Aligned_cols=246 Identities=26% Similarity=0.352 Sum_probs=203.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++....+ .++.++++|++|+++++++++++.++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC-CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999887 7777777654322 36788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++||
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS 142 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMK------------------KQGFGRIINIAS 142 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCCEEEEECc
Confidence 99999999999986532 5678899999999999999999999999997 345689999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--------chh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--------DSW 368 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--------~~~ 368 (429)
.++..+. ++..+|++||+++++|++.++.|++++||+||+|+||+++|++.+..... .+.
T Consensus 143 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 210 (260)
T 1x1t_A 143 AHGLVAS------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQET 210 (260)
T ss_dssp GGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------
T ss_pred HHhCcCC------------CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHH
Confidence 9887664 56789999999999999999999999999999999999999987543210 011
Q ss_pred HHHHH-HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVV-LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~-~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+ ....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 211 ~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~-~~~~tG~~~~vdgG~~~ 259 (260)
T 1x1t_A 211 AARELLSEKQPSLQFVTPEQLGGTAVFLASDA-AAQITGTTVSVDGGWTA 259 (260)
T ss_dssp ----CHHHHCTTCCCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred HHHHHhhccCCCCCCcCHHHHHHHHHHHhChh-hcCCCCCEEEECCCccC
Confidence 11222 33456678899999999999999654 67899999999999754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=334.16 Aligned_cols=249 Identities=22% Similarity=0.281 Sum_probs=207.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC------------hhHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD------------LDKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~------------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.... .++.++++|++|
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d 118 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRD 118 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 557899999999999999999999999999999999886 666777666665443 478899999999
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhh
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYV 282 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (429)
+++++++++++.+++|+||+||||||+.... .+.+.++|++++++|+.|++++++.++|.|.+
T Consensus 119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--------------- 183 (317)
T 3oec_A 119 LASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIE--------------- 183 (317)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------
Confidence 9999999999999999999999999987543 56789999999999999999999999999973
Q ss_pred cccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC
Q psy12836 283 FQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 283 ~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~ 362 (429)
+...|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++....
T Consensus 184 --~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~ 249 (317)
T 3oec_A 184 --RGQGGSVIFVSSTVGLRGA------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE 249 (317)
T ss_dssp --TCSCEEEEEECCGGGSSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH
T ss_pred --cCCCCEEEEECcHHhcCCC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch
Confidence 2346899999999988764 66889999999999999999999999999999999999999986431
Q ss_pred C----------CCchhHHHHH---HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 363 S----------YYDSWLSTVV---LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 363 ~----------~~~~~~~~~~---~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
. .......... ....+ .++.+|+|+|++++||+++ ...++||+.|.+|||...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~pedvA~av~fL~s~-~a~~itG~~i~vdGG~~~~ 316 (317)
T 3oec_A 250 KLLKMFLPHLENPTREDAAELFSQLTLLP-IPWVEPEDVSNAVAWLASD-EARYIHGAAIPVDGGQLAR 316 (317)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHTTTCSSS-SSSBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGC
T ss_pred hhhhhhhhhccccchhHHHHHHhhhccCC-CCCCCHHHHHHHHHHHcCC-cccCCCCCEEEECcchhhc
Confidence 0 0001000111 11222 4667999999999999965 4789999999999998653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=334.68 Aligned_cols=248 Identities=25% Similarity=0.312 Sum_probs=209.9
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+...+++||++|||||++|||+++|++|+++|++|++++|+.+...+...+..... +.++.++++|++|++++++++++
T Consensus 40 ~~~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 40 KGSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHH
Confidence 33567899999999999999999999999999999999998765444333332222 34788999999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+++|++|+||||||.... ..+.+.++|++.+++|+.|++++++.++|+|+ +.|+|
T Consensus 119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--------------------~~g~i 178 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLK--------------------QGDVI 178 (291)
T ss_dssp HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCC--------------------TTCEE
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh--------------------hCCEE
Confidence 99999999999999998643 25568999999999999999999999998874 35799
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++..... .+....
T Consensus 179 v~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~ 244 (291)
T 3ijr_A 179 INTASIVAYEGN------------ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF--DEKKVS 244 (291)
T ss_dssp EEECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS--CHHHHH
T ss_pred EEEechHhcCCC------------CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC--CHHHHH
Confidence 999999988765 567899999999999999999999999999999999999999865432 122233
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+....+.+++.+|+|+|++++||+++. ..++||+.|.+|||....
T Consensus 245 ~~~~~~p~~r~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdGG~~~~ 290 (291)
T 3ijr_A 245 QFGSNVPMQRPGQPYELAPAYVYLASSD-SSYVTGQMIHVNGGVIVN 290 (291)
T ss_dssp HTTTTSTTSSCBCGGGTHHHHHHHHSGG-GTTCCSCEEEESSSCCCC
T ss_pred HHHccCCCCCCcCHHHHHHHHHHHhCCc-cCCCcCCEEEECCCcccC
Confidence 3445567788999999999999999664 789999999999998753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=324.96 Aligned_cols=244 Identities=23% Similarity=0.252 Sum_probs=206.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH--HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK--CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~--~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++... +.++.++++|++|.++++++++++.++
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK 78 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999887 77777776543 246888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC-cEEEEEc
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-SRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~IV~vS 295 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++. |+||++|
T Consensus 79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~~g~iv~is 140 (258)
T 3a28_C 79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFD------------------ELGVKGKIINAA 140 (258)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCCEEEEEC
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHH------------------hcCCCcEEEEEC
Confidence 99999999999986533 5678999999999999999999999999997 3344 8999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCch
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDS 367 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~ 367 (429)
|.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||+++|++.+... ...+
T Consensus 141 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~ 208 (258)
T 3a28_C 141 SIAAIQGF------------PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIG 208 (258)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTT
T ss_pred cchhccCC------------CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchH
Confidence 99887664 567899999999999999999999999999999999999999865311 0001
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.....+....|.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 209 ~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 209 ENFKEYSSSIALGRPSVPEDVAGLVSFLASEN-SNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSSCC
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHHhCcc-cCCCCCCEEEECCCEec
Confidence 22222334456678899999999999999654 68999999999999753
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=325.52 Aligned_cols=245 Identities=25% Similarity=0.310 Sum_probs=179.2
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++
T Consensus 3 ~~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T 3qiv_A 3 GSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRT 80 (253)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999998888886543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC-----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 216 KKENKKINVLINNAGVSGC-----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~-----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
.+.++++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|. +++.|+
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~ 142 (253)
T 3qiv_A 81 LAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMT------------------KRGGGA 142 (253)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHTCEE
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCCE
Confidence 9999999999999998431 24578999999999999999999999999998 446799
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++.. +...|++||+|+++|+++++.|++++||+||+|+||++.|++.+.... +...
T Consensus 143 iv~isS~~~~~---------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~ 205 (253)
T 3qiv_A 143 IVNQSSTAAWL---------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTP--KEMV 205 (253)
T ss_dssp EEEECC--------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------
T ss_pred EEEECCccccC---------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCc--HHHH
Confidence 99999988752 356799999999999999999999999999999999999998765431 2233
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+.+....+..++.+|+|+|++++|++++ ...+++|+.|.+|||...+
T Consensus 206 ~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 206 DDIVKGLPLSRMGTPDDLVGMCLFLLSD-EASWITGQIFNVDGGQIIR 252 (253)
T ss_dssp --------------CCHHHHHHHHHHSG-GGTTCCSCEEEC-------
T ss_pred HHHhccCCCCCCCCHHHHHHHHHHHcCc-cccCCCCCEEEECCCeecC
Confidence 4455566777889999999999999965 4678999999999998754
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=330.74 Aligned_cols=243 Identities=23% Similarity=0.272 Sum_probs=204.2
Q ss_pred cCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.++..+++||++|||||++|||+++|++|+++|++|++++|+.+... ..+..+++|++|.++++++++
T Consensus 6 ~~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~ 73 (269)
T 3vtz_A 6 HHHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV------------NVSDHFKIDVTNEEEVKEAVE 73 (269)
T ss_dssp ----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT------------TSSEEEECCTTCHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc------------CceeEEEecCCCHHHHHHHHH
Confidence 34577899999999999999999999999999999999999876431 135678899999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+|
T Consensus 74 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~i 135 (269)
T 3vtz_A 74 KTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVML------------------AIGHGSI 135 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEE
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEE
Confidence 9999999999999999986533 5678899999999999999999999999998 4467999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-----CCc
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-----YYD 366 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-----~~~ 366 (429)
|++||.++..+. ++..+|++||+|+++|+++++.|+++ ||+||+|+||+|.|++..... ...
T Consensus 136 v~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~-~i~vn~v~PG~v~T~~~~~~~~~~~~~~~ 202 (269)
T 3vtz_A 136 INIASVQSYAAT------------KNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDE 202 (269)
T ss_dssp EEECCGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHTT-TEEEEEEEECSBCCHHHHHHHHHHHCCST
T ss_pred EEECchhhccCC------------CCChhHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEECCCcCcchhhhhhccccccc
Confidence 999999987764 66889999999999999999999998 899999999999999864321 000
Q ss_pred ---hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 367 ---SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 367 ---~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+...+.+....+.+++.+|+|+|++++||++++ ..++||+.|.+|||....-.
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~~~~ 258 (269)
T 3vtz_A 203 NAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDR-SSFITGACLTVDGGLLSKLP 258 (269)
T ss_dssp THHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGBCC
T ss_pred hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCc-cCCCcCcEEEECCCccccCC
Confidence 222333445667788999999999999999754 78999999999999876543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=327.77 Aligned_cols=248 Identities=25% Similarity=0.326 Sum_probs=209.0
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... + ++.++++|++|.++++++++++
T Consensus 23 ~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 23 PYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999998888877777432 2 6788899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|++... ..+.|+||+
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--------------~~~~g~iV~ 165 (276)
T 2b4q_A 100 GELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSAS--------------AENPARVIN 165 (276)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC--------------SSSCEEEEE
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccC--------------CCCCCEEEE
Confidence 99999999999999986543 56788999999999999999999999999974210 112389999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcc-hhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~-~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+||.++..+. ++.. +|++||+|+++|++.++.|++++||+||+|+||++.|++.+.... . ....
T Consensus 166 isS~~~~~~~------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~-~~~~ 230 (276)
T 2b4q_A 166 IGSVAGISAM------------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIAN--D-PQAL 230 (276)
T ss_dssp ECCGGGTCCC------------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHH--C-HHHH
T ss_pred ECCHHHcCCC------------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcch--h-HHHH
Confidence 9999887654 4455 899999999999999999999999999999999999998654211 0 1122
Q ss_pred HHh--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLK--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+.. ..|.+++.+|+|+|++++||++++ ..+++|++|.+|||..
T Consensus 231 ~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~ 275 (276)
T 2b4q_A 231 EADSASIPMGRWGRPEEMAALAISLAGTA-GAYMTGNVIPIDGGFH 275 (276)
T ss_dssp HHHHHTSTTSSCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTT
T ss_pred HHhhcCCCCCCcCCHHHHHHHHHHHhCcc-ccCCCCCEEEeCCCcc
Confidence 223 456678899999999999999764 6789999999999975
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=324.41 Aligned_cols=248 Identities=23% Similarity=0.266 Sum_probs=210.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|.++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999988887777755422 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+... ..+.+.++|++.+++|+.+++++++.++|.|+ +++.|+||++|
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~g~iv~is 143 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMR------------------ARGGGAIIHNA 143 (263)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEEC
Confidence 99999999999998643 25678899999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------Cch
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YDS 367 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~~ 367 (429)
|.++..+. ++..+|++||+|+++|++.++.|++++||+||+|+||++.|++...... ..+
T Consensus 144 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~ 211 (263)
T 3ai3_A 144 SICAVQPL------------WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWK 211 (263)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHH
T ss_pred chhhcCCC------------CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHH
Confidence 99887654 5678999999999999999999999999999999999999998643210 011
Q ss_pred hHHHHHHhH-HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVVLKP-LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~~~~-~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.....+... .|.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 212 ~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~-~~~~~G~~~~vdgG~~~ 261 (263)
T 3ai3_A 212 GYLQSVADEHAPIKRFASPEELANFFVFLCSER-ATYSVGSAYFVDGGMLK 261 (263)
T ss_dssp HHHHHHHHHHCTTCSCBCHHHHHHHHHHHTSTT-CTTCCSCEEEESTTCCC
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCcc-ccCCCCcEEEECCCccc
Confidence 111222233 56677899999999999999754 67899999999999764
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=327.86 Aligned_cols=246 Identities=25% Similarity=0.275 Sum_probs=207.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++|++|||||++|||+++|++|+++|++|++++ |+.+..++..+++... +.++.++++|++|.++++++++++
T Consensus 20 ~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHH
Confidence 3357899999999999999999999999999999998 6666666655555433 346889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.+|++|+||||||+.... .+.+.++|++++++|+.+++++++.++|.|. +++.|+||+
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~g~iv~ 159 (269)
T 3gk3_A 98 LADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMV------------------ERRFGRIVN 159 (269)
T ss_dssp HHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEEE
Confidence 99999999999999987543 5678999999999999999999999999998 446699999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... ......+
T Consensus 160 isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~~~ 225 (269)
T 3gk3_A 160 IGSVNGSRGA------------FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQ--DVLEAKI 225 (269)
T ss_dssp ECCHHHHHCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC---------CCS
T ss_pred eCChhhccCC------------CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhch--hHHHHHh
Confidence 9999988765 6688999999999999999999999999999999999999999876532 1111123
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++.+|+|+|++++||++++ ..++||+.|.+|||...
T Consensus 226 ~~~~~~~~~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdgG~~~ 268 (269)
T 3gk3_A 226 LPQIPVGRLGRPDEVAALIAFLCSDD-AGFVTGADLAINGGMHM 268 (269)
T ss_dssp GGGCTTSSCBCHHHHHHHHHHHTSTT-CTTCCSCEEEESTTSCC
T ss_pred hhcCCcCCccCHHHHHHHHHHHhCCC-cCCeeCcEEEECCCEeC
Confidence 44566678889999999999999764 68899999999999865
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=335.05 Aligned_cols=246 Identities=20% Similarity=0.224 Sum_probs=208.2
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+. +..++..+.+... +.++.++++|++|.++++++++
T Consensus 43 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 43 GSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999873 3455555554433 3478899999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 214 EVKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
++.+++|++|+||||||+... ..+.+.++|++.+++|+.|+++++++++|+|. +.|+
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~--------------------~~g~ 180 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLP--------------------KGAS 180 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCC--------------------TTCE
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhh--------------------cCCE
Confidence 999999999999999998542 25678999999999999999999999999874 2489
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++....... +...
T Consensus 181 Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~ 247 (294)
T 3r3s_A 181 IITTSSIQAYQPS------------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQT-QDKI 247 (294)
T ss_dssp EEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSC-GGGS
T ss_pred EEEECChhhccCC------------CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCC-HHHH
Confidence 9999999988764 66889999999999999999999999999999999999999984332211 1122
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....+.+++.+|+|+|++++||+++ +..++||+.|.+|||...
T Consensus 248 ~~~~~~~p~~r~~~p~dvA~~v~~L~s~-~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 248 PQFGQQTPMKRAGQPAELAPVYVYLASQ-ESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp TTTTTTSTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTCCC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCCEEEECCCccC
Confidence 2344556778899999999999999965 478999999999999765
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=321.03 Aligned_cols=236 Identities=17% Similarity=0.134 Sum_probs=188.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999888887653 4789999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+ |++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 81 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~is 141 (252)
T 3h7a_A 81 H-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLML------------------AHGQGKIFFTG 141 (252)
T ss_dssp H-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEE
T ss_pred h-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEEC
Confidence 9 9999999999987543 5678999999999999999999999999998 44579999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEE-EEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITV-NAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrV-n~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
|.++..+. ++..+|++||+|+++|+++|+.|++++||+| |+|+||+|+|++.+.... .......
T Consensus 142 S~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~---~~~~~~~ 206 (252)
T 3h7a_A 142 ATASLRGG------------SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERRE---QMFGKDA 206 (252)
T ss_dssp EGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------
T ss_pred CHHHcCCC------------CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccch---hhhhhhh
Confidence 99988764 6788999999999999999999999999999 999999999999876532 1112233
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
...+.+ +.+|+|+|++++||++++. ..++|+....
T Consensus 207 ~~~~~~-~~~pedvA~~~~~l~s~~~-~~~~~~i~~~ 241 (252)
T 3h7a_A 207 LANPDL-LMPPAAVAGAYWQLYQQPK-SAWTFEMEIR 241 (252)
T ss_dssp --------CCHHHHHHHHHHHHHCCG-GGBCSEEEEB
T ss_pred hcCCcc-CCCHHHHHHHHHHHHhCch-hcceeeEEee
Confidence 334444 8899999999999998774 5667876443
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=320.87 Aligned_cols=238 Identities=23% Similarity=0.225 Sum_probs=202.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
||++|||||++|||+++|++|+++| ++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.+++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999999985 78999999999888777665 2368899999999999999999999999
Q ss_pred CCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 220 KKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 220 g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
|++|+||||||+..+ ..+.+.++|++++++|+.|++++++.++|+|++ ++ |+||++||
T Consensus 77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~------------------~~-g~iv~isS 137 (254)
T 3kzv_A 77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKK------------------TN-GNVVFVSS 137 (254)
T ss_dssp SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HT-CEEEEECC
T ss_pred CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh------------------cC-CeEEEEcC
Confidence 999999999998543 356789999999999999999999999999973 23 89999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC------chhHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY------DSWLS 370 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~------~~~~~ 370 (429)
.++..+. ++..+|++||+|+++|+++|+.|+ .||+||+|+||+|+|++.+..... .+...
T Consensus 138 ~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~--~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~ 203 (254)
T 3kzv_A 138 DACNMYF------------SSWGAYGSSKAALNHFAMTLANEE--RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQL 203 (254)
T ss_dssp SCCCCSS------------CCSHHHHHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHH
T ss_pred chhccCC------------CCcchHHHHHHHHHHHHHHHHhhc--cCcEEEEEeCCcccchhHHHhhcccCccccCHHHH
Confidence 9987764 678899999999999999999998 689999999999999998765321 23344
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+.+....+.+++.+|+|+|++++||++++...++||++|.+||+...
T Consensus 204 ~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~~ 250 (254)
T 3kzv_A 204 KMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPALA 250 (254)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGGG
T ss_pred HHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCcccc
Confidence 44556677888999999999999999775348999999999998653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=333.10 Aligned_cols=257 Identities=20% Similarity=0.209 Sum_probs=208.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC------------hhHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD------------LDKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~------------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+ .+.+++...++... +.++.++++|++|
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRD 82 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTC
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCC
Confidence 567999999999999999999999999999999999998 66777766666543 3478899999999
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
.++++++++++.+++|++|+||||||+.......+.++|++++++|+.|++++++.++|+|.
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------ 144 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLT------------------ 144 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCC------------------
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhh------------------
Confidence 99999999999999999999999999876555578899999999999999999999998873
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
+.|+||++||.++..+.... +..+...+++..+|++||+|+++|+++++.|++++||+||+|+||+|+|+|.+....
T Consensus 145 --~~g~iv~isS~~~~~~~~~~-~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~ 221 (287)
T 3pxx_A 145 --SGASIITTGSVAGLIAAAQP-PGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM 221 (287)
T ss_dssp --TTCEEEEECCHHHHHHHHCC-C-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHH
T ss_pred --cCcEEEEeccchhccccccc-ccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccch
Confidence 35899999999887653111 111112224567899999999999999999999999999999999999999764210
Q ss_pred --------CchhHHHH-----HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 --------YDSWLSTV-----VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 --------~~~~~~~~-----~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+..... ....++ +++.+|+|+|++++||+++ .+.++||+.|.+|||...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dva~~v~fL~s~-~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 222 YRQFRPDLEAPSRADALLAFPAMQAMP-TPYVEASDISNAVCFLASD-ESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHHHCTTSSSCCHHHHHHHGGGGCSSS-CSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGG
T ss_pred hhhhccccccchhHHHHhhhhhhcccC-CCCCCHHHHHhhHheecch-hhcCCCCceEeECchhhhc
Confidence 00111110 112233 5678999999999999965 4789999999999998753
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=332.88 Aligned_cols=246 Identities=28% Similarity=0.296 Sum_probs=210.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC---EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA---KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~---~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+++||++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++....++.++.+++||++|.+++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999999999999998 99999999999999999887776667899999999999999999999
Q ss_pred HHHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+++|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|.|+ +++.|+|
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~I 170 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQ------------------AKNSGDI 170 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEE
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCCeE
Confidence 9999999999999999864 235678999999999999999999999999998 4467999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++........+..
T Consensus 171 V~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~-- 236 (287)
T 3rku_A 171 VNLGSIAGRDAY------------PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQ-- 236 (287)
T ss_dssp EEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHH--
T ss_pred EEECChhhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHH--
Confidence 999999988764 668899999999999999999999999999999999999999864321111111
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...........+|+|+|++++||++++ ..+++|+.+.+++|...
T Consensus 237 -~~~~~~~~~p~~pedvA~~v~~l~s~~-~~~i~g~~i~v~~g~~~ 280 (287)
T 3rku_A 237 -AKNVYKDTTPLMADDVADLIVYATSRK-QNTVIADTLIFPTNQAS 280 (287)
T ss_dssp -HHHHHTTSCCEEHHHHHHHHHHHHTSC-TTEEEEEEEEEETTEEE
T ss_pred -HHHhhcccCCCCHHHHHHHHHHHhCCC-CCeEecceEEeeCCCCC
Confidence 111122223348999999999999765 67899999999988654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=321.80 Aligned_cols=243 Identities=25% Similarity=0.292 Sum_probs=207.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.+++|+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999999998888877775543 36888999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcCcc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSSVA 298 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS~~ 298 (429)
+|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|.+ ++ .|+||++||.+
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~------------------~~~~g~iv~isS~~ 141 (256)
T 1geg_A 80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKK------------------EGHGGKIINACSQA 141 (256)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HTSCEEEEEECCGG
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cCCCCEEEEECchh
Confidence 99999999986432 56788999999999999999999999999973 34 68999999998
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--------CchhHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--------YDSWLS 370 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--------~~~~~~ 370 (429)
+..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++...... ..+...
T Consensus 142 ~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
T 1geg_A 142 GHVGN------------PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGT 209 (256)
T ss_dssp GTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hcCCC------------CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHH
Confidence 87764 5678999999999999999999999999999999999999998653210 011122
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....|.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 210 ~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~~ 255 (256)
T 1geg_A 210 AEFAKRITLGRLSEPEDVAACVSYLASPD-SDYMTGQSLLIDGGMVF 255 (256)
T ss_dssp HHHHTTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSSSC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEeCCCccC
Confidence 22333456678899999999999999654 67899999999999753
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=323.26 Aligned_cols=247 Identities=19% Similarity=0.202 Sum_probs=206.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999998888877776432223688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++| +|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|. +++.|+||++|
T Consensus 83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~is 143 (260)
T 2z1n_A 83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMV------------------EKGWGRMVYIG 143 (260)
T ss_dssp TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEEC
Confidence 999 99999999986433 5678899999999999999999999999997 34569999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-------CCchh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-------YYDSW 368 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-------~~~~~ 368 (429)
|.++..+. ++..+|++||++++++++.++.|++++||+||+|+||++.|++.+... ...+.
T Consensus 144 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~ 211 (260)
T 2z1n_A 144 SVTLLRPW------------QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVE 211 (260)
T ss_dssp CGGGTSCC------------TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC---------------
T ss_pred chhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHH
Confidence 99887654 567899999999999999999999999999999999999999876210 00011
Q ss_pred H-HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 L-STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~-~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
. ...+....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||..
T Consensus 212 ~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~-~~~~tG~~i~vdGG~~ 259 (260)
T 2z1n_A 212 EALKSMASRIPMGRVGKPEELASVVAFLASEK-ASFITGAVIPVDGGAH 259 (260)
T ss_dssp --------CCTTSSCCCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTTT
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHHhCcc-ccCCCCCEEEeCCCcc
Confidence 1 122333456678899999999999999654 6789999999999964
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=322.51 Aligned_cols=247 Identities=22% Similarity=0.270 Sum_probs=211.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++|.++++++++++.
T Consensus 9 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 86 (260)
T 2zat_A 9 RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAV 86 (260)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999988888777775543 367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+.+|++|+||||||+.. +..+.+.++|++++++|+.+++++++.++|+|+ +++.|+||+
T Consensus 87 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~~g~iv~ 148 (260)
T 2zat_A 87 NLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEME------------------KRGGGSVLI 148 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEE
Confidence 99999999999999753 235678899999999999999999999999997 456789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+++++|++.++.|++++||+||+|+||++.|++...... .+.....+
T Consensus 149 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~ 215 (260)
T 2zat_A 149 VSSVGAYHPF------------PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM-DKARKEYM 215 (260)
T ss_dssp ECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS-SHHHHHHH
T ss_pred EechhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc-ChHHHHHH
Confidence 9999887654 5678999999999999999999999999999999999999998653211 11122223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 216 ~~~~~~~~~~~~~dva~~v~~l~s~~-~~~~tG~~~~vdgG~~~ 258 (260)
T 2zat_A 216 KESLRIRRLGNPEDCAGIVSFLCSED-ASYITGETVVVGGGTAS 258 (260)
T ss_dssp HHHHTCSSCBCGGGGHHHHHHHTSGG-GTTCCSCEEEESTTCCC
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCcc-cCCccCCEEEECCCccc
Confidence 34556678899999999999999654 67899999999999754
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=321.26 Aligned_cols=241 Identities=25% Similarity=0.318 Sum_probs=196.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+. +++++ ++... +.++.++++|++|.++++++++++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVI 77 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999998 66654 23222 2468889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~i 139 (249)
T 2ew8_A 78 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMK------------------RNGWGRIINL 139 (249)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCeEEEEE
Confidence 9999999999999986433 5678999999999999999999999999997 3456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCccc-CCCCCchhHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR-HSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~-~~~~~~~~~~~~~ 373 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.. ......+...+.+
T Consensus 140 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 207 (249)
T 2ew8_A 140 TSTTYWLKI------------EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNM 207 (249)
T ss_dssp CCGGGGSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CT
T ss_pred cchhhccCC------------CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHHHHh
Confidence 999887664 567899999999999999999999999999999999999999876 3210000111111
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
. .+.+++.+|+|+|++++||+++ ...+++|+++.+|||..
T Consensus 208 ~--~~~~~~~~p~dva~~~~~l~s~-~~~~~tG~~~~vdGG~~ 247 (249)
T 2ew8_A 208 L--QAIPRLQVPLDLTGAAAFLASD-DASFITGQTLAVDGGMV 247 (249)
T ss_dssp T--SSSCSCCCTHHHHHHHHHHTSG-GGTTCCSCEEEESSSCC
T ss_pred h--CccCCCCCHHHHHHHHHHHcCc-ccCCCCCcEEEECCCcc
Confidence 1 3556789999999999999965 46789999999999965
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=330.91 Aligned_cols=240 Identities=19% Similarity=0.251 Sum_probs=206.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-------HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-------KCEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-------~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++.... .++.+++||++|.++++
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~ 81 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVA 81 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHH
Confidence 56789999999999999999999999999999999999976 4566666665543 47899999999999999
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++
T Consensus 82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~ 143 (285)
T 3sc4_A 82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMK------------------GRD 143 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTT------------------TSS
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcC
Confidence 99999999999999999999987543 5678999999999999999999999999997 556
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCC-CccCCcccCCCCCc
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRHSSYYD 366 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG-~v~T~~~~~~~~~~ 366 (429)
.|+||++||.++..+. +++..+|++||+|+++|+++|+.|++++||+||+|+|| .+.|++.+...
T Consensus 144 ~g~iv~isS~~~~~~~-----------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~--- 209 (285)
T 3sc4_A 144 NPHILTLSPPIRLEPK-----------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLL--- 209 (285)
T ss_dssp SCEEEECCCCCCCSGG-----------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHH---
T ss_pred CcEEEEECChhhccCC-----------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhc---
Confidence 7999999998887653 14568899999999999999999999999999999999 78998754321
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
....+.+++.+|+|+|++++||++++ . ++||+++.++|+.....
T Consensus 210 -------~~~~~~~r~~~pedvA~~~~~l~s~~-~-~~tG~~i~~dgg~~~~g 253 (285)
T 3sc4_A 210 -------GGDEAMARSRKPEVYADAAYVVLNKP-S-SYTGNTLLCEDVLLESG 253 (285)
T ss_dssp -------TSCCCCTTCBCTHHHHHHHHHHHTSC-T-TCCSCEEEHHHHHHHHT
T ss_pred -------cccccccCCCCHHHHHHHHHHHhCCc-c-cccceEEEEcCchhccC
Confidence 11223467889999999999999776 4 89999999999877644
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=327.13 Aligned_cols=234 Identities=22% Similarity=0.285 Sum_probs=195.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-------HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-------CEKARKEVVLESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-------~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++.... .++.++++|++|++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRA 79 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHH
Confidence 57899999999999999999999999999999999998754 555555554443 478899999999999999
Q ss_pred HHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 211 FAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+++++.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +++.
T Consensus 80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~ 141 (274)
T 3e03_A 80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLL------------------QAPN 141 (274)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHT------------------TSSS
T ss_pred HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHH------------------hcCC
Confidence 9999999999999999999986543 5678999999999999999999999999997 5567
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCC-CccCCcccCCCCCch
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG-IVNTDILRHSSYYDS 367 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG-~v~T~~~~~~~~~~~ 367 (429)
|+||++||.++..+.. +++..+|++||+|+++|+++++.|++++||+||+|+|| .++|++.+....
T Consensus 142 g~iv~isS~~~~~~~~----------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~~~--- 208 (274)
T 3e03_A 142 PHILTLAPPPSLNPAW----------WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPG--- 208 (274)
T ss_dssp CEEEECCCCCCCCHHH----------HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------C---
T ss_pred ceEEEECChHhcCCCC----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhccc---
Confidence 9999999988765410 14567899999999999999999999999999999999 799998743321
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.+..+..+|+|+|++++||++++ ..++||++|.++|.
T Consensus 209 ---------~~~~~~~~pedvA~~v~~l~s~~-~~~itG~~i~~~g~ 245 (274)
T 3e03_A 209 ---------VDAAACRRPEIMADAAHAVLTRE-AAGFHGQFLIDDEV 245 (274)
T ss_dssp ---------CCGGGSBCTHHHHHHHHHHHTSC-CTTCCSCEEEHHHH
T ss_pred ---------ccccccCCHHHHHHHHHHHhCcc-ccccCCeEEEcCcc
Confidence 11234779999999999999665 78999999955443
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=329.02 Aligned_cols=237 Identities=24% Similarity=0.269 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+.++. ...+++|+++.++++++++++.
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-------------~~~~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-------------DLHLPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-------------SEECCCCTTSHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-------------hhccCcCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999998654321 1345899999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||++
T Consensus 90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~iv~i 151 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMA------------------AAGGGAIVNV 151 (266)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEE
Confidence 9999999999999987543 5678999999999999999999999999998 4467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC----CCchhHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS----YYDSWLS 370 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~----~~~~~~~ 370 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+... ...+...
T Consensus 152 sS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 219 (266)
T 3uxy_A 152 ASCWGLRPG------------PGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAV 219 (266)
T ss_dssp CCSBTTBCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHH
T ss_pred CCHHhCCCC------------CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHH
Confidence 999988764 678899999999999999999999999999999999999999865321 1111222
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....+.+++.+|+|+|++++||++++ ..++||+.|.+|||...
T Consensus 220 ~~~~~~~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 220 AELGRTVPLGRIAEPEDIADVVLFLASDA-ARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp HHHHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTCCC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCch-hcCCcCCEEEECcCEeC
Confidence 33455667788999999999999999664 78999999999999764
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=325.14 Aligned_cols=253 Identities=21% Similarity=0.222 Sum_probs=204.3
Q ss_pred cCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCC----HHHH
Q psy12836 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLAS----QESI 208 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~----~~sv 208 (429)
.++..+++||++|||||++|||+++|++|+++|++|++++|+. +++++..+++.... +.++.++++|++| .+++
T Consensus 15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v 93 (288)
T 2x9g_A 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASC 93 (288)
T ss_dssp -------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHH
T ss_pred CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHH
Confidence 4456678999999999999999999999999999999999998 88888777775332 2468899999999 9999
Q ss_pred HHHHHHHHHhCCCeeEEEEccccCCCC-------CC-----CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccc
Q psy12836 209 RAFAEEVKKENKKINVLINNAGVSGCR-------KM-----LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCN 276 (429)
Q Consensus 209 ~~~~~~i~~~~g~iD~lI~nAG~~~~~-------~~-----~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~ 276 (429)
+++++++.+.+|++|+||||||+.... .+ .+.++|++.+++|+.+++++++.++|.|.+.....
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~---- 169 (288)
T 2x9g_A 94 EEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNC---- 169 (288)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCC----
Confidence 999999999999999999999986432 23 67789999999999999999999999987311000
Q ss_pred hhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccC
Q psy12836 277 LIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356 (429)
Q Consensus 277 ~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T 356 (429)
....|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|
T Consensus 170 --------~~~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t 229 (288)
T 2x9g_A 170 --------TSSNLSIVNLCDAMVDQPC------------MAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLL 229 (288)
T ss_dssp ---------CCCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSC
T ss_pred --------CCCCeEEEEEecccccCCC------------CCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccC
Confidence 0116899999999887654 66889999999999999999999999999999999999999
Q ss_pred CcccCCCCCchhHHHHHHhHHhhhcc-CCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 357 DILRHSSYYDSWLSTVVLKPLVWLFI-KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
++ + .. +.....+....+.+++ .+|+|+|++++||+++ ...+++|++|.+|||...
T Consensus 230 ~~-~-~~---~~~~~~~~~~~p~~r~~~~pedvA~~v~~l~s~-~~~~itG~~i~vdGG~~~ 285 (288)
T 2x9g_A 230 PV-A-MG---EEEKDKWRRKVPLGRREASAEQIADAVIFLVSG-SAQYITGSIIKVDGGLSL 285 (288)
T ss_dssp CT-T-SC---HHHHHHHHHTCTTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred cc-c-cC---hHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCc-cccCccCCEEEECcchhh
Confidence 98 4 21 1122333344566777 8999999999999965 478999999999999764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=321.96 Aligned_cols=251 Identities=13% Similarity=0.121 Sum_probs=213.7
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+++||++|||||+ +|||+++|++|+++|++|++++|+....+.. +++....+..++.++++|++|.++++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSV-HELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHH-HHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999 6799999999999999999999997554443 34444444447889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 216 KKENKKINVLINNAGVSG------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.++++++|+||||||+.. +..+.+.++++..+++|+.+++++++.++|+|+ +.|
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--------------------~~g 141 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMT--------------------EGG 141 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCT--------------------TCE
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcC--------------------CCc
Confidence 999999999999999864 225678999999999999999999999999875 358
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+..... +..
T Consensus 142 ~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~ 208 (266)
T 3oig_A 142 SIVTLTYLGGELVM------------PNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDF-NSI 208 (266)
T ss_dssp EEEEEECGGGTSCC------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTH-HHH
T ss_pred eEEEEecccccccC------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccch-HHH
Confidence 99999999988764 66889999999999999999999999999999999999999998775432 233
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRF 423 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~~ 423 (429)
...+....+.++..+|+|+|++++||+++ ...+++|+.|.+|||+........
T Consensus 209 ~~~~~~~~~~~~~~~p~dva~~v~~l~s~-~~~~~tG~~i~vdGG~~~~~~~~~ 261 (266)
T 3oig_A 209 LKDIEERAPLRRTTTPEEVGDTAAFLFSD-MSRGITGENLHVDSGFHITARLEH 261 (266)
T ss_dssp HHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCCCCC-
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHcCC-chhcCcCCEEEECCCeEEeeecCC
Confidence 34455566778889999999999999965 468899999999999988765443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=323.77 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=205.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|+++++++++++.++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998877766554 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++||
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS 138 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMK------------------DAGGGSIVNISS 138 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCCEEEEECc
Confidence 99999999999986532 5678899999999999999999999999998 345699999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++.+.... . ....+...
T Consensus 139 ~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~-~~~~~~~~ 203 (254)
T 1hdc_A 139 AAGLMGL------------ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGI--R-QGEGNYPN 203 (254)
T ss_dssp GGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTC--C-CSTTSCTT
T ss_pred hhhccCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccch--h-HHHHHHhc
Confidence 9887664 5678999999999999999999999999999999999999998653211 0 00111223
Q ss_pred HhhhccC-CHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 377 LVWLFIK-SPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 377 ~~~~~~~-~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+.+++. +|+|+|++++||++++ ..+++|+++.+|||....
T Consensus 204 ~p~~~~~~~~~dvA~~v~~l~s~~-~~~~tG~~~~vdgG~~~~ 245 (254)
T 1hdc_A 204 TPMGRVGNEPGEIAGAVVKLLSDT-SSYVTGAELAVDGGWTTG 245 (254)
T ss_dssp STTSSCB-CHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhCch-hcCCCCCEEEECCCcccc
Confidence 4556777 9999999999999654 678999999999998764
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=321.70 Aligned_cols=247 Identities=21% Similarity=0.238 Sum_probs=212.9
Q ss_pred CCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHH-HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKC-EKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 137 ~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
..+++||++|||||+ +|||+++|++|+++|++|++++|+.++. ++..+++....+ .++.++++|++|.++++++++
T Consensus 15 ~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG-IKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHC-CCEECCBCCTTCHHHHHHHHH
T ss_pred ccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcC-CceeEEecCCCCHHHHHHHHH
Confidence 457899999999999 9999999999999999999999887555 566666654433 478899999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.++++++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|+ +++.|+|
T Consensus 94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~i 155 (267)
T 3gdg_A 94 DVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFK------------------ERGTGSL 155 (267)
T ss_dssp HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEE
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHH------------------HcCCceE
Confidence 9999999999999999987543 5678999999999999999999999999998 4457899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+... ++..+|++||+|+++|++.++.|+++. |+||+|+||+++|++.+... +...+
T Consensus 156 v~isS~~~~~~~~~----------~~~~~Y~~sK~a~~~~~~~la~e~~~~-i~v~~v~PG~v~t~~~~~~~---~~~~~ 221 (267)
T 3gdg_A 156 VITASMSGHIANFP----------QEQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSDFVP---KETQQ 221 (267)
T ss_dssp EEECCGGGTSCCSS----------SCCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEEECCEECSCGGGSC---HHHHH
T ss_pred EEEccccccccCCC----------CCCCcchHHHHHHHHHHHHHHHHhccC-cEEEEEECCccccchhhhCC---HHHHH
Confidence 99999988765311 357899999999999999999999987 99999999999999987653 33344
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+.+++.+|+|+|++++||+++ ...++||+.|.+|||+..
T Consensus 222 ~~~~~~~~~r~~~~~dva~~~~~l~s~-~~~~itG~~i~vdgG~~~ 266 (267)
T 3gdg_A 222 LWHSMIPMGRDGLAKELKGAYVYFASD-ASTYTTGADLLIDGGYTT 266 (267)
T ss_dssp HHHTTSTTSSCEETHHHHHHHHHHHST-TCTTCCSCEEEESTTGGG
T ss_pred HHHhcCCCCCCcCHHHHHhHhheeecC-ccccccCCEEEECCceec
Confidence 455566778889999999999999965 478999999999999875
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=328.71 Aligned_cols=246 Identities=23% Similarity=0.240 Sum_probs=199.3
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ..+.++++|++|+++++++++++
T Consensus 27 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~ 105 (281)
T 4dry_A 27 GKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAV 105 (281)
T ss_dssp -------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988888865543 34688999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+++|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|.++ ....|+||
T Consensus 106 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----------------~~~~g~IV 169 (281)
T 4dry_A 106 RAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQ----------------TPRGGRII 169 (281)
T ss_dssp HHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHS----------------SSCCEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----------------CCCCcEEE
Confidence 9999999999999998643 3667899999999999999999999999999832 11368999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+........
T Consensus 170 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~---- 233 (281)
T 4dry_A 170 NNGSISAQTPR------------PNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVLQ---- 233 (281)
T ss_dssp EECCGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CEEEC----
T ss_pred EECCHHhCCCC------------CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcchhhh----
Confidence 99999988764 67889999999999999999999999999999999999999997655321110
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.....+..+..+|+|+|++++||++.+....+++..+...+.
T Consensus 234 ~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~~~i~p~~~ 275 (281)
T 4dry_A 234 ANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTVMATRM 275 (281)
T ss_dssp TTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEEEEEEEETTS
T ss_pred hhhcccccCCCCHHHHHHHHHHHhCCCccCccccEEEEeccc
Confidence 112234456789999999999999998877777777665543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=323.11 Aligned_cols=247 Identities=28% Similarity=0.326 Sum_probs=209.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.+
T Consensus 18 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp CCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998888777775543 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHH--HHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDK--LQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|. |. +++.|+||+
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~------------------~~~~g~iv~ 157 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGML------------------ERGTGRIVN 157 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHH------------------HHTEEEEEE
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHh------------------hcCCeEEEE
Confidence 999999999999986533 56788999999999999999999999998 87 335689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---C-----
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---Y----- 365 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~----- 365 (429)
+||.++..+. ++..+|++||+|+++|+++++.|+++.||+||+|+||++.|++...... .
T Consensus 158 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 225 (277)
T 2rhc_B 158 IASTGGKQGV------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVS 225 (277)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCC
T ss_pred ECccccccCC------------CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccc
Confidence 9999887664 5678999999999999999999999999999999999999998643210 0
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.....+....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 226 ~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~-~~~~tG~~~~vdGG~~~ 276 (277)
T 2rhc_B 226 TEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPG-AAAVTAQALNVCGGLGN 276 (277)
T ss_dssp HHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTCCC
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCch-hcCCCCcEEEECCCccc
Confidence 0111222333456677899999999999999654 67899999999999653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=322.74 Aligned_cols=251 Identities=18% Similarity=0.140 Sum_probs=206.8
Q ss_pred cCCCCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHH
Q psy12836 134 YTEETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~ 211 (429)
.+...++++|++|||||+ +|||+++|++|+++|++|++++|+.... +..+++....+ .+.+++||++|.++++++
T Consensus 6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK-DRITEFAAEFG--SELVFPCDVADDAQIDAL 82 (271)
T ss_dssp ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHHHTT--CCCEEECCTTCHHHHHHH
T ss_pred CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhH-HHHHHHHHHcC--CcEEEECCCCCHHHHHHH
Confidence 345778999999999999 9999999999999999999999985443 33444444443 477889999999999999
Q ss_pred HHHHHHhCCCeeEEEEccccCCC------CCC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 212 AEEVKKENKKINVLINNAGVSGC------RKM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~------~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
++++.+++|++|+||||||+... ..+ .+.++|++++++|+.+++++++.++|+|+
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------ 144 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLS------------------ 144 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEE------------------
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhc------------------
Confidence 99999999999999999998643 233 78999999999999999999999998874
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
+.|+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+....
T Consensus 145 --~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~ 210 (271)
T 3ek2_A 145 --DDASLLTLSYLGAERAI------------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKS 210 (271)
T ss_dssp --EEEEEEEEECGGGTSBC------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHH
T ss_pred --cCceEEEEeccccccCC------------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccc
Confidence 25899999999987764 6688999999999999999999999999999999999999999876532
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.+.....+....+.+++.+|+|+|++++||+++ ...++||++|.+|||....-..
T Consensus 211 -~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~-~~~~~tG~~i~vdgG~~~~~~~ 265 (271)
T 3ek2_A 211 -FGKILDFVESNSPLKRNVTIEQVGNAGAFLLSD-LASGVTAEVMHVDSGFNAVVGG 265 (271)
T ss_dssp -HHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSEEEEESTTGGGBCCC
T ss_pred -hHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCc-ccCCeeeeEEEECCCeeeehhh
Confidence 123334455566778899999999999999965 4789999999999999876543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=329.49 Aligned_cols=250 Identities=16% Similarity=0.142 Sum_probs=208.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHH-----------
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQE----------- 206 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~----------- 206 (429)
+++||++|||||++|||+++|++|+++|++|++++ |+.++++++.+++.... +.++.++++|++|.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCeEEEEEeeCCCchhcccccccccc
Confidence 48899999999999999999999999999999999 99998888888775332 246889999999999
Q ss_pred ------HHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCC--------------HHHHHhhhcchhHHHHHHHHHHHHH
Q psy12836 207 ------SIRAFAEEVKKENKKINVLINNAGVSGCR--KMLT--------------EEKIELQLGVNHMGHFLLTMLLLDK 264 (429)
Q Consensus 207 ------sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~--------------~~~~~~~~~vN~~g~~~l~~~~~~~ 264 (429)
+++++++++.+.+|++|+||||||+.... .+.+ .++|+.++++|+.|+++++++++|.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 201 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986432 4456 8899999999999999999999999
Q ss_pred HHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCe
Q psy12836 265 LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGI 344 (429)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gI 344 (429)
|.+..... ....|+||++||.++..+. ++..+|++||+|+++|++.|+.|++++||
T Consensus 202 m~~~~~~~------------~~~~g~IV~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gI 257 (328)
T 2qhx_A 202 VAGTPAKH------------RGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQI 257 (328)
T ss_dssp HHHSCGGG------------SCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred HHhcCCcC------------CCCCcEEEEECchhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 97321000 1116899999999887654 56889999999999999999999999999
Q ss_pred EEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 345 TVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 345 rVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+||+|+||+|+|++ ... +.....+....|.+ ++.+|+|+|++++||+++ ...+++|++|.+|||....+
T Consensus 258 rvn~v~PG~v~T~~-~~~----~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~-~~~~itG~~i~vdGG~~~~~ 327 (328)
T 2qhx_A 258 RVNGVGPGLSVLVD-DMP----PAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSS-KAKYITGTCVKVDGGYSLTR 327 (328)
T ss_dssp EEEEEEESSBSCCC-CSC----HHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCC
T ss_pred EEEEEecCcccCCc-ccc----HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCc-cccCccCcEEEECCCcccCc
Confidence 99999999999998 432 22223344445666 889999999999999965 47899999999999987643
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=314.60 Aligned_cols=230 Identities=19% Similarity=0.192 Sum_probs=194.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|.++++++++++.+++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999888777762 258899999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ + .+++||++||.
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~-~~~~iv~isS~ 136 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIG------------------E-RGGVLANVLSS 136 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------T-TCEEEEEECCE
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------H-cCCEEEEEeCH
Confidence 9999999999986433 5678999999999999999999999999996 3 33699999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... .
T Consensus 137 ~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~------------~ 192 (235)
T 3l6e_A 137 AAQVGK------------ANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH------------V 192 (235)
T ss_dssp ECCSSC------------SSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-------------------
T ss_pred HhcCCC------------CCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC------------C
Confidence 988765 5678999999999999999999999999999999999999998765431 1
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+..++.+|+|+|++++|+++++...+++|..+......+.
T Consensus 193 ~~~~~~~pedvA~~v~~l~~~~~~~~i~~i~~~~~~~~~~ 232 (235)
T 3l6e_A 193 DPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRNEGHHH 232 (235)
T ss_dssp ----CBCHHHHHHHHHHHTCCCSSEEEEEEEEEECCC---
T ss_pred CCcCCCCHHHHHHHHHHHHhCCCCcceeeEEEecCCCCcc
Confidence 1236789999999999999988888999998877766544
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=322.23 Aligned_cols=252 Identities=22% Similarity=0.259 Sum_probs=200.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh-cCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE-SKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... ..+.++.++++|++|.++++++++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888877776321 1234688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCC----CHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 218 ENKKINVLINNAGVSGCR--KML----TEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~----~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++|++|+||||||+.... .+. +.++|++.+++|+.|++++++.++|.|+ +++ |+|
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~-g~i 143 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLS------------------STK-GEI 143 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHT-CEE
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh------------------hcC-CeE
Confidence 999999999999986432 345 8899999999999999999999999997 333 899
Q ss_pred EEEcCccc-ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH-
Q psy12836 292 INVSSVAH-KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL- 369 (429)
Q Consensus 292 V~vSS~~~-~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~- 369 (429)
|++||.++ ..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++........+..
T Consensus 144 v~isS~~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 211 (278)
T 1spx_A 144 VNISSIASGLHAT------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSK 211 (278)
T ss_dssp EEECCTTSSSSCC------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC------------
T ss_pred EEEecccccccCC------------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhh
Confidence 99999887 5543 567899999999999999999999999999999999999999865431111111
Q ss_pred -----HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCccc-CCceEEecCcccccccccc
Q psy12836 370 -----STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLEN-VSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 370 -----~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~-vtG~~i~~~gg~~~~~~~~ 422 (429)
...+....|.+++.+|+|+|++++||++++ ..+ ++|++|.+|||...+....
T Consensus 212 ~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~-~~~~~tG~~~~vdgG~~~~~~~~ 269 (278)
T 1spx_A 212 KFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRK-TSSYIIGHQLVVDGGSSLIMGLH 269 (278)
T ss_dssp --HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHH-HHTTCCSCEEEESTTGGGC----
T ss_pred hhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCcc-ccCcccCcEEEECCCcccccCcc
Confidence 122333445677899999999999999654 455 9999999999987655433
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=320.25 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=211.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++
T Consensus 24 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (281)
T 3ppi_A 24 TIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAA 98 (281)
T ss_dssp CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999988877776 236889999999999999999999
Q ss_pred HHhCCCeeEEEEc-cccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 216 KKENKKINVLINN-AGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 216 ~~~~g~iD~lI~n-AG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++++|++||| ||+.... .+.+.++|++.+++|+.+++++++.+++.|.+.... .+++
T Consensus 99 -~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------------~~~~ 165 (281)
T 3ppi_A 99 -NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPR------------ENGE 165 (281)
T ss_dssp -TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCC------------TTSC
T ss_pred -HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc------------ccCC
Confidence 888999999999 5544322 256889999999999999999999999999742110 0246
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
.|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|.|++.+... +
T Consensus 166 ~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---~ 230 (281)
T 3ppi_A 166 RGALVLTASIAGYEGQ------------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVG---E 230 (281)
T ss_dssp CEEEEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTC---H
T ss_pred CeEEEEEecccccCCC------------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhccc---H
Confidence 7899999999988764 668899999999999999999999999999999999999999987654 2
Q ss_pred hHHHHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 368 WLSTVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 368 ~~~~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.....+....+. +++.+|+|+|++++||+++ .+++|+.|.+|||...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~---~~~tG~~i~vdGG~~~~p 280 (281)
T 3ppi_A 231 EALAKFAANIPFPKRLGTPDEFADAAAFLLTN---GYINGEVMRLDGAQRFTP 280 (281)
T ss_dssp HHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHC---SSCCSCEEEESTTCCCCC
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHcC---CCcCCcEEEECCCcccCC
Confidence 233344445555 6788999999999999975 589999999999988765
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=318.74 Aligned_cols=243 Identities=21% Similarity=0.249 Sum_probs=209.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++.+|++|||||++|||+++|++|+++|++|++. .|+.+++++..+++.... .++.++++|++|.++++++++++
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~ 98 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHE 98 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999664 577888888877776654 36888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.++++++|+||||||+.... .+.+.+++++.+++|+.|++++++.+++.|.+ +++.|+||+
T Consensus 99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-----------------~~~~g~iv~ 161 (267)
T 4iiu_A 99 IAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIG-----------------ARQGGRIIT 161 (267)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEE
T ss_pred HHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-----------------cCCCcEEEE
Confidence 99999999999999987544 46789999999999999999999999988863 345789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.. +......
T Consensus 162 isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~ 225 (267)
T 4iiu_A 162 LSSVSGVMGN------------RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----ESALKEA 225 (267)
T ss_dssp ECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----HHHHHHH
T ss_pred EcchHhccCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----HHHHHHH
Confidence 9999988775 66889999999999999999999999999999999999999997654 2233445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
....+.+++.+|+|+|++++||+++ ...++||+.|.+|||+
T Consensus 226 ~~~~p~~~~~~~edva~~~~~L~s~-~~~~itG~~i~vdGG~ 266 (267)
T 4iiu_A 226 MSMIPMKRMGQAEEVAGLASYLMSD-IAGYVTRQVISINGGM 266 (267)
T ss_dssp HHTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTC
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCC-cccCccCCEEEeCCCc
Confidence 5566778889999999999999965 4689999999999985
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-41 Score=317.89 Aligned_cols=242 Identities=24% Similarity=0.252 Sum_probs=204.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.++ ++..+++. . .++++|++|.++++++++++.+
T Consensus 2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~------~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG------G-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT------C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh------C-CEEEeeCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999887 65555542 3 6789999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+.... .+.+.++|++.+++|+.|+++++++++|.|+ +++.|+||++|
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~------------------~~~~g~iv~is 135 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMR------------------KVGGGAIVNVA 135 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TTTCEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 999999999999986543 5678899999999999999999999999998 55679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTV 372 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~ 372 (429)
|.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++..... ...+.....
T Consensus 136 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~ 203 (256)
T 2d1y_A 136 SVQGLFAE------------QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRD 203 (256)
T ss_dssp CGGGTSBC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHH
T ss_pred cccccCCC------------CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHH
Confidence 99887664 567899999999999999999999999999999999999999864310 000111122
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||...+
T Consensus 204 ~~~~~~~~~~~~~~dvA~~~~~l~s~~-~~~~~G~~~~v~gG~~~~ 248 (256)
T 2d1y_A 204 WEDLHALRRLGKPEEVAEAVLFLASEK-ASFITGAILPVDGGMTAS 248 (256)
T ss_dssp HHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGB
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCch-hcCCCCCEEEECCCcccc
Confidence 333445677899999999999999654 678999999999997654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=320.81 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=210.2
Q ss_pred CCCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 136 ~~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.+.+++||++|||||+ +|||+++|++|+++|++|++++|+. .++..+++....+ .+.+++||++|.++++++++
T Consensus 20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHH
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHH
Confidence 3567899999999988 7899999999999999999999987 3344455544444 47788999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC------CC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 214 EVKKENKKINVLINNAGVSGCR------KM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~------~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
++.+.++++|+||||||+.... .+ .+.+++++++++|+.+++++++.++|.|. +
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~- 156 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMK------------------N- 156 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------T-
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------c-
Confidence 9999999999999999987531 22 78899999999999999999999999986 3
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~ 366 (429)
..|+||++||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+.....
T Consensus 157 ~~g~iv~isS~~~~~~~------------~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~- 223 (280)
T 3nrc_A 157 RNASMVALTYIGAEKAM------------PSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNF- 223 (280)
T ss_dssp TTCEEEEEECGGGTSCC------------TTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTH-
T ss_pred CCCeEEEEeccccccCC------------CCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcch-
Confidence 36999999999988764 66889999999999999999999999999999999999999998765431
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+..........+.++..+|+|+|++++||+++ ...++||+.|.+|||.....
T Consensus 224 ~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~-~~~~~tG~~i~vdgG~~~~~ 275 (280)
T 3nrc_A 224 KKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSD-MATGITGEVVHVDAGYHCVS 275 (280)
T ss_dssp HHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSG-GGTTCCSCEEEESTTGGGCC
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-ccCCcCCcEEEECCCccccC
Confidence 23334455566778899999999999999965 47889999999999988754
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=318.19 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=200.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++.+|++|||||++|||+++|++|+++|++|++++|+.+...+...+..... +.++.++++|++|.++++++++++.+
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 81 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMS 81 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999887655444333332222 24789999999999999999999999
Q ss_pred hCCCeeEEEEccccC--C--CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 218 ENKKINVLINNAGVS--G--CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~--~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++++|+||||||+. . +..+.+.++|++.+++|+.|++++++.++|.|+ +++.|+||+
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~ 143 (264)
T 3i4f_A 82 HFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMR------------------KQNFGRIIN 143 (264)
T ss_dssp HHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHH------------------hcCCCeEEE
Confidence 999999999999943 2 225678899999999999999999999999998 446799999
Q ss_pred EcCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 294 VSSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+||.... .. .+++..+|++||+|+++|+++|+.|++++||+||+|+||++.|++.+... +.....
T Consensus 144 iss~~~~~~~-----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~ 209 (264)
T 3i4f_A 144 YGFQGADSAP-----------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATI---QEARQL 209 (264)
T ss_dssp ECCTTGGGCC-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCH---HHHHHC
T ss_pred EeechhcccC-----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhcc---HHHHHH
Confidence 9997432 21 12567899999999999999999999999999999999999999977653 223333
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
.....|.+++.+|+|+|++++||++++ ..++||+.|.+|||......
T Consensus 210 ~~~~~p~~r~~~~~dva~~v~~l~s~~-~~~itG~~i~vdGG~~~~~~ 256 (264)
T 3i4f_A 210 KEHNTPIGRSGTGEDIARTISFLCEDD-SDMITGTIIEVTGAVDVIHR 256 (264)
T ss_dssp --------CCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESCSCCCCC-
T ss_pred HhhcCCCCCCcCHHHHHHHHHHHcCcc-cCCCCCcEEEEcCceeeccC
Confidence 444567788999999999999999764 67899999999999887654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=321.06 Aligned_cols=239 Identities=24% Similarity=0.248 Sum_probs=187.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|+++++++++++.
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----DDALCVPTDVTDPDSVRALFTATV 97 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----SCCEEEECCTTSHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEecCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999888877763 367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++|++|+||||||+..+ ..+.+.++|++++++|+.|++++++.++|.|++. ..+.|+||+
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----------------~~~~g~IV~ 161 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQ----------------EPRGGRIIN 161 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHS----------------SSCCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC----------------CCCCcEEEE
Confidence 999999999999998643 3567899999999999999999999999999832 113689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+....... ..
T Consensus 162 isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~----~~ 225 (272)
T 4dyv_A 162 NGSISATSPR------------PYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVP----QA 225 (272)
T ss_dssp ECCSSTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------
T ss_pred ECchhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccch----hh
Confidence 9999988764 6688999999999999999999999999999999999999999876532111 11
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
....+..++.+|+|+|++++||++++....+++..+...
T Consensus 226 ~~~~~~~~~~~pedvA~~v~fL~s~~~~~~~~~i~i~~~ 264 (272)
T 4dyv_A 226 DLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIMAT 264 (272)
T ss_dssp ----------CHHHHHHHHHHHHHSCTTSCCCEEEEEEC
T ss_pred hhcccccCCCCHHHHHHHHHHHhCCCCcCccceEEEecc
Confidence 223455678899999999999999886665555555443
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=325.05 Aligned_cols=253 Identities=21% Similarity=0.224 Sum_probs=210.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ..++.++++|++|.++++++++++
T Consensus 21 m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 21 MARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp --CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999998888777755321 126888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 216 KKENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
.+++|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|. +++ |+|
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~-g~I 161 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLI------------------KTK-GEI 161 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTT-CEE
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHH------------------hcC-CEE
Confidence 9999999999999998643 34578899999999999999999999999997 334 999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-----
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD----- 366 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~----- 366 (429)
|++||.++..+. +++..+|++||+|+++|++.++.|++++||+||+|+||+|+|++........
T Consensus 162 V~isS~~~~~~~-----------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~ 230 (297)
T 1xhl_A 162 VNVSSIVAGPQA-----------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDK 230 (297)
T ss_dssp EEECCGGGSSSC-----------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHH
T ss_pred EEEcCchhccCC-----------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccc
Confidence 999998886542 1457899999999999999999999999999999999999999875431000
Q ss_pred -hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 367 -SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 367 -~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
......+....|.+++.+|+|+|++++||++++...+++|+.|.+|||.....
T Consensus 231 ~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~ 284 (297)
T 1xhl_A 231 LYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVM 284 (297)
T ss_dssp HHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCC
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccc
Confidence 01111122234667889999999999999965326789999999999987653
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=319.18 Aligned_cols=244 Identities=23% Similarity=0.275 Sum_probs=203.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+ ++..+++... +.++.++++|++|.++++++++++.++
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999876 4444555432 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++||
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~~g~iv~isS 138 (255)
T 2q2v_A 77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMR------------------ARNWGRIINIAS 138 (255)
T ss_dssp HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEEcC
Confidence 99999999999986533 5578899999999999999999999999998 446799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH---H---
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL---S--- 370 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~---~--- 370 (429)
.++..+. ++..+|++||+++++|++.++.|++++||+||+|+||++.|++.+......+.. .
T Consensus 139 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 206 (255)
T 2q2v_A 139 VHGLVGS------------TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQA 206 (255)
T ss_dssp GGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHH
T ss_pred chhccCC------------CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHH
Confidence 9887664 567899999999999999999999999999999999999999865321000011 0
Q ss_pred -HHH-HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 -TVV-LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 -~~~-~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+ ....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 207 ~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~-~~~~tG~~~~vdgG~~~ 254 (255)
T 2q2v_A 207 QHDLLAEKQPSLAFVTPEHLGELVLFLCSEA-GSQVRGAAWNVDGGWLA 254 (255)
T ss_dssp HHHHHTTTCTTCCCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTGGG
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHhCCc-cCCCCCCEEEECCCccC
Confidence 112 22345567889999999999999654 67899999999999753
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=323.82 Aligned_cols=252 Identities=23% Similarity=0.220 Sum_probs=209.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ..++.++++|++|+++++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999988888777754321 12688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 218 ENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++|++|+||||||+... ..+.+.++|++++++|+.+++++++.++|.|.+ ++ |+|
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~------------------~~-g~i 143 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVA------------------SK-GEI 143 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HT-CEE
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhc------------------CC-CcE
Confidence 99999999999998643 245688999999999999999999999999973 33 899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-----
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD----- 366 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~----- 366 (429)
|++||.++..+. .++..+|++||+|+++|+++++.|++++||+||+|+||++.|++........
T Consensus 144 v~isS~~~~~~~-----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 212 (280)
T 1xkq_A 144 VNVSSIVAGPQA-----------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQK 212 (280)
T ss_dssp EEECCGGGSSSC-----------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHH
T ss_pred EEecCccccCCC-----------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccc
Confidence 999998876542 1457899999999999999999999999999999999999999875431000
Q ss_pred -hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 367 -SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 367 -~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
......+....|.+++.+|+|+|++++||++++...+++|+.|.+|||......
T Consensus 213 ~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~~~~~ 267 (280)
T 1xkq_A 213 FYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSLVMG 267 (280)
T ss_dssp HHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCBG
T ss_pred hHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcccccC
Confidence 011112222345678899999999999999653267899999999999876533
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=318.26 Aligned_cols=243 Identities=24% Similarity=0.325 Sum_probs=196.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999998888887776543 37888999999999999999999886
Q ss_pred -CCCeeEEEEccc--cC-------CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 219 -NKKINVLINNAG--VS-------GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 219 -~g~iD~lI~nAG--~~-------~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+|++|+|||||| +. .+..+.+.++|++++++|+.+++++++.++|.|. +++.
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~ 141 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMV------------------PAGQ 141 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHG------------------GGTC
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHh------------------hcCC
Confidence 999999999995 32 2335677899999999999999999999999997 4457
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+ .+..+|++||+|+++|+++++.|++++||+||+|+||+|+|+|.+........
T Consensus 142 g~iv~isS~~~~~~-------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 208 (260)
T 2qq5_A 142 GLIVVISSPGSLQY-------------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEV 208 (260)
T ss_dssp CEEEEECCGGGTSC-------------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC---------
T ss_pred cEEEEEcChhhcCC-------------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccc
Confidence 99999999887653 24578999999999999999999999999999999999999997643211110
Q ss_pred HHHHHHh--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 369 LSTVVLK--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 369 ~~~~~~~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
....... ..+.++..+|+|+|++++||++++...++||++|.+|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~~~~~ 256 (260)
T 2qq5_A 209 LQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKVLPSCDL 256 (260)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEEHHHH
T ss_pred cchhHHHHHHhhhccCCCHHHHHHHHHHHhcCcccccccceeechhhh
Confidence 0000011 122345578999999999999876446899999998754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=318.50 Aligned_cols=239 Identities=22% Similarity=0.290 Sum_probs=193.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++|.++++++++++.+++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999888886653 478899999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++||.
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~IV~isS~ 141 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIME------------------AQRSGQIINIGSI 141 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCG
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCeEEEEEcCH
Confidence 9999999999987543 5678999999999999999999999999998 4467999999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
++..+. ++..+|++||+|+++|+++|+.|+ + ||+||+|+||+|+|++.......... . ... .
T Consensus 142 ~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~-~-gIrvn~v~PG~v~T~~~~~~~~~~~~--~-~~~-~ 203 (264)
T 3tfo_A 142 GALSVV------------PTAAVYCATKFAVRAISDGLRQES-T-NIRVTCVNPGVVESELAGTITHEETM--A-AMD-T 203 (264)
T ss_dssp GGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHC-S-SEEEEEEEECCC-----------------------
T ss_pred HHcccC------------CCChhHHHHHHHHHHHHHHHHHhC-C-CCEEEEEecCCCcCcccccccchhHH--H-HHH-h
Confidence 988764 668899999999999999999998 5 99999999999999997654321110 0 001 1
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
......+|+|+|++++||++++ ..+.+|+.+..+++...
T Consensus 204 ~~~~~~~pedvA~~v~~l~s~~-~~~~~~~i~i~p~~~~~ 242 (264)
T 3tfo_A 204 YRAIALQPADIARAVRQVIEAP-QSVDTTEITIRPTASGN 242 (264)
T ss_dssp ----CCCHHHHHHHHHHHHHSC-TTEEEEEEEEEECC---
T ss_pred hhccCCCHHHHHHHHHHHhcCC-ccCccceEEEecCcccc
Confidence 1123579999999999999887 56788988877776554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=321.87 Aligned_cols=234 Identities=21% Similarity=0.306 Sum_probs=201.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
++++++|++|||||++|||+++|++|+++|++|++++|+.++.. ...+.++++|++|+++++++++++.
T Consensus 23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHHHHH
T ss_pred hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999865422 1257889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~~~~g~iv~i 153 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEML------------------KQGSGHIVSI 153 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEE
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEEEE
Confidence 9999999999999987543 5678999999999999999999999999998 5567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+.. ..+..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.... ....+.
T Consensus 154 sS~~~~~~~~----------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~------~~~~~~ 217 (260)
T 3un1_A 154 TTSLVDQPMV----------GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE------THSTLA 217 (260)
T ss_dssp CCTTTTSCBT----------TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG------GHHHHH
T ss_pred echhhccCCC----------CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH------HHHHHh
Confidence 9987754321 145678999999999999999999999999999999999999986532 223344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...|.+++.+|+|+|++++||. +..+++|+.|.+|||....
T Consensus 218 ~~~p~~r~~~~~dva~av~~L~---~~~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 218 GLHPVGRMGEIRDVVDAVLYLE---HAGFITGEILHVDGGQNAG 258 (260)
T ss_dssp TTSTTSSCBCHHHHHHHHHHHH---HCTTCCSCEEEESTTGGGC
T ss_pred ccCCCCCCcCHHHHHHHHHHhc---ccCCCCCcEEEECCCeecc
Confidence 5567788999999999999993 3568999999999998764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=320.74 Aligned_cols=238 Identities=23% Similarity=0.263 Sum_probs=204.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|.++++++++++.++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999988877665542 36788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.| + + .|+||++||
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~-----------------~--~g~iv~isS 137 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-E-----------------E--GGSLVLTGS 137 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----------------T--TCEEEEECC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-h-----------------c--CCEEEEEec
Confidence 99999999999986533 567889999999999999999999999988 2 3 589999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++. +. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++.+... +.....+...
T Consensus 138 ~~~~-~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~ 201 (263)
T 2a4k_A 138 VAGL-GA------------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP---PWAWEQEVGA 201 (263)
T ss_dssp CTTC-CH------------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC---HHHHHHHHHT
T ss_pred chhc-CC------------CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC---HHHHHHHHhc
Confidence 9887 43 457789999999999999999999999999999999999999976542 2232334444
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.|.+++.+|+|+|++++|++++ ...+++|+.+.+|||....
T Consensus 202 ~p~~~~~~p~dvA~~v~~l~s~-~~~~~tG~~i~vdgG~~~~ 242 (263)
T 2a4k_A 202 SPLGRAGRPEEVAQAALFLLSE-ESAYITGQALYVDGGRSIV 242 (263)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHhCc-cccCCcCCEEEECCCcccc
Confidence 5667889999999999999965 4678999999999997654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=317.07 Aligned_cols=245 Identities=26% Similarity=0.303 Sum_probs=206.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.. ++.++++|++|.++++++++++.
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 7 IFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999887766554421 46788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~ 293 (429)
+++|++|+||||||+.... .+.+.++|++.+++|+.|+++++++++|.|. +++ .|+||+
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~~g~iv~ 143 (263)
T 3ak4_A 82 DALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFL------------------ASNTKGVIVN 143 (263)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCCCEEEE
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCeEEEE
Confidence 9999999999999986433 5678899999999999999999999999997 334 689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----C----
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----Y---- 365 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~---- 365 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++...... .
T Consensus 144 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 211 (263)
T 3ak4_A 144 TASLAAKVGA------------PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMT 211 (263)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSC
T ss_pred ecccccccCC------------CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccC
Confidence 9999887654 5678999999999999999999999999999999999999998643210 0
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.....+....|.+++.+|+|+|++++||++++ ..+++|+.|.+|||...
T Consensus 212 ~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~-~~~~tG~~~~vdgG~~~ 262 (263)
T 3ak4_A 212 PEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDA-ARFMTGQGINVTGGVRM 262 (263)
T ss_dssp HHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSSSC
T ss_pred cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEECcCEeC
Confidence 0112222333456677899999999999999654 67899999999999653
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=321.35 Aligned_cols=246 Identities=24% Similarity=0.288 Sum_probs=204.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.++ .++..+++... +.++.++.+|++|.++++++++++
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHH
Confidence 456889999999999999999999999999999999998754 45555555443 236888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|. +.|+||+
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--------------------~~g~iv~ 161 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--------------------IGGRLIL 161 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC--------------------TTCEEEE
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh--------------------cCCeEEE
Confidence 99999999999999986433 5678999999999999999999999999873 3589999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-----CC---
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-----YY--- 365 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-----~~--- 365 (429)
+||.++..+. .++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++..... ..
T Consensus 162 isS~~~~~~~-----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 230 (283)
T 1g0o_A 162 MGSITGQAKA-----------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENL 230 (283)
T ss_dssp ECCGGGTCSS-----------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTC
T ss_pred EechhhccCC-----------CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhcccccccc
Confidence 9999887653 1237899999999999999999999999999999999999999864321 00
Q ss_pred chhHHHHHHh--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 366 DSWLSTVVLK--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 366 ~~~~~~~~~~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.....+.. ..+.+++.+|+|+|++++||++++ ..++||+.|.+|||..
T Consensus 231 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~itG~~i~vdgG~~ 282 (283)
T 1g0o_A 231 SNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASND-GGWVTGKVIGIDGGAC 282 (283)
T ss_dssp CHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTCC
T ss_pred CHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCcc-ccCcCCCEEEeCCCcc
Confidence 1222222333 456678899999999999999764 6799999999999964
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=318.73 Aligned_cols=241 Identities=23% Similarity=0.240 Sum_probs=205.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998887776665 236788999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+.... .+.+.++|++++++|+.+++++++.++|.|+ +++ |+||++||
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~-g~iv~isS 138 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMK------------------ETG-GSIINMAS 138 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TTC-EEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHH------------------HcC-CEEEEEcc
Confidence 99999999999986433 5678899999999999999999999999997 445 99999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCC--CeEEEEEeCCCccCCcccCCCCCchhHHHH-H
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGT--GITVNAVHPGIVNTDILRHSSYYDSWLSTV-V 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~--gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~-~ 373 (429)
.++..+. ++..+|++||+++++|+++++.|++++ ||+||+|+||++.|++...... +..... +
T Consensus 139 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~ 204 (253)
T 1hxh_A 139 VSSWLPI------------EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP--KGVSKEMV 204 (253)
T ss_dssp GGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC--TTCCHHHH
T ss_pred hhhcCCC------------CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc--hhhhHHHH
Confidence 9887654 567899999999999999999999988 9999999999999998654111 111111 2
Q ss_pred Hh---HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 374 LK---PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 374 ~~---~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.. ..+.+++.+|+|+|++++||++++ ..+++|+++.+|||....
T Consensus 205 ~~~~~~~p~~~~~~~~dvA~~~~~l~s~~-~~~~tG~~~~vdgG~~~~ 251 (253)
T 1hxh_A 205 LHDPKLNRAGRAYMPERIAQLVLFLASDE-SSVMSGSELHADNSILGM 251 (253)
T ss_dssp BCBTTTBTTCCEECHHHHHHHHHHHHSGG-GTTCCSCEEEESSSCTTT
T ss_pred hhhhccCccCCCCCHHHHHHHHHHHcCcc-ccCCCCcEEEECCCcccc
Confidence 22 345567889999999999999654 678999999999997653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=318.09 Aligned_cols=242 Identities=16% Similarity=0.103 Sum_probs=205.0
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++....+ .+.++++|++|.++++++++++.
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHH
Confidence 5789999999999 99999999999999999999999986 4444555544333 36788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++|++|+||||||+... ..+.+.++|+.++++|+.|+++++++++|.|+ + .|+
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g~ 139 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLN------------------N--GAS 139 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------E--EEE
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhc------------------c--CCE
Confidence 999999999999998642 34678999999999999999999999998874 2 489
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... .+...
T Consensus 140 iv~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~ 206 (275)
T 2pd4_A 140 VLTLSYLGSTKYM------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD-FRMIL 206 (275)
T ss_dssp EEEEECGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT-HHHHH
T ss_pred EEEEecchhcCCC------------CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccc-cHHHH
Confidence 9999998887654 5678999999999999999999999999999999999999998765432 12222
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....|.+++.+|+|+|++++|++++ ...+++|+++.+|||...
T Consensus 207 ~~~~~~~p~~~~~~p~dva~~~~~l~s~-~~~~~tG~~~~vdgg~~~ 252 (275)
T 2pd4_A 207 KWNEINAPLRKNVSLEEVGNAGMYLLSS-LSSGVSGEVHFVDAGYHV 252 (275)
T ss_dssp HHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred HHHHhcCCcCCCCCHHHHHHHHHHHhCc-cccCCCCCEEEECCCccc
Confidence 3334445667889999999999999965 467899999999999765
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=315.58 Aligned_cols=242 Identities=20% Similarity=0.219 Sum_probs=205.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHH---cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAK---RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~---~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+++||++|||||++|||+++|++|++ +|++|++++|+.+++++..+++....++.++.++++|++|++++++++++
T Consensus 2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 357899999999999999999999999 89999999999999988888886654455789999999999999999999
Q ss_pred HHH--hCCCee--EEEEccccCCC----CCC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 215 VKK--ENKKIN--VLINNAGVSGC----RKM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 215 i~~--~~g~iD--~lI~nAG~~~~----~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
+.+ .+|++| +||||||+... ..+ .+.++|++++++|+.|++++++.++|.|+ +
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~ 143 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQ------------------D 143 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSC------------------C
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------h
Confidence 988 778888 99999998643 234 57899999999999999999999999986 4
Q ss_pred C--CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC
Q psy12836 286 S--APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363 (429)
Q Consensus 286 ~--~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~ 363 (429)
+ +.|+||++||.++..+. ++..+|++||+|+++|+++++.|+++ |+||+|+||+++|+|.+...
T Consensus 144 ~~~~~g~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~--i~vn~v~PG~v~T~~~~~~~ 209 (259)
T 1oaa_A 144 SPGLSKTVVNISSLCALQPY------------KGWGLYCAGKAARDMLYQVLAAEEPS--VRVLSYAPGPLDNDMQQLAR 209 (259)
T ss_dssp CTTCEEEEEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHCTT--EEEEEEECCSBSSHHHHHHH
T ss_pred ccCCCceEEEEcCchhcCCC------------CCccHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCCCcCcchHHHHh
Confidence 4 56899999999987664 66889999999999999999999974 99999999999999865421
Q ss_pred C--CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 364 Y--YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 364 ~--~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
. ..+...+.+....|.+++.+|+|+|+.++|++++ ..++||+++.+||
T Consensus 210 ~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~--~~~itG~~i~vdg 259 (259)
T 1oaa_A 210 ETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK--DTFQSGAHVDFYD 259 (259)
T ss_dssp HHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH--CCSCTTEEEETTC
T ss_pred hccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhh--ccccCCcEEeccC
Confidence 0 0122233344456677899999999999999974 4789999999886
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=316.93 Aligned_cols=250 Identities=17% Similarity=0.121 Sum_probs=202.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCH----HHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQ----ESIRAFA 212 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~----~sv~~~~ 212 (429)
.+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++....+ .++.++++|++|. +++++++
T Consensus 7 ~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (276)
T 1mxh_A 7 EASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDII 85 (276)
T ss_dssp ----CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHH
Confidence 4578999999999999999999999999999999999 98888888887765422 3688899999999 9999999
Q ss_pred HHHHHhCCCeeEEEEccccCCCC--CCCCH-----------HHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhh
Q psy12836 213 EEVKKENKKINVLINNAGVSGCR--KMLTE-----------EKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIW 279 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~--~~~~~-----------~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~ 279 (429)
+++.+++|++|+||||||+.... .+.+. ++|++++++|+.|++++++.++|.|. +...
T Consensus 86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~-------- 156 (276)
T 1mxh_A 86 DCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGA-------- 156 (276)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCC--------
Confidence 99999999999999999986433 44566 89999999999999999999999885 1000
Q ss_pred hhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc
Q psy12836 280 YYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359 (429)
Q Consensus 280 ~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~ 359 (429)
.....|+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|+
T Consensus 157 ----~~~~~g~iv~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-- 218 (276)
T 1mxh_A 157 ----WRSRNLSVVNLCDAMTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-- 218 (276)
T ss_dssp ------CCCEEEEEECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC--
T ss_pred ----CCCCCcEEEEECchhhcCCC------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC--
Confidence 01234899999999987664 567899999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHhHHhhhc-cCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 360 RHSSYYDSWLSTVVLKPLVWLF-IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~-~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
... .+.....+....+.++ +.+|+|+|++++||+++ ...+++|++|.+|||....+
T Consensus 219 ~~~---~~~~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~-~~~~~tG~~~~vdgG~~~~~ 275 (276)
T 1mxh_A 219 PAM---PQETQEEYRRKVPLGQSEASAAQIADAIAFLVSK-DAGYITGTTLKVDGGLILAR 275 (276)
T ss_dssp SSS---CHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCC
T ss_pred ccC---CHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCc-cccCccCcEEEECCchhccC
Confidence 222 1222233334456667 88999999999999965 46789999999999976543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=314.47 Aligned_cols=242 Identities=29% Similarity=0.342 Sum_probs=207.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++||++|||||++|||+++|++|+++|++|+++ +|+.+++++..+++.... .++.++.+|+++.++++++++++.+
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999885 677888888877776543 4788999999999999999999887
Q ss_pred hCC------CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 218 ENK------KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 218 ~~g------~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.++ ++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +.|
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--------------------~~~ 141 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLR--------------------DNS 141 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE--------------------EEE
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhC--------------------CCC
Confidence 654 599999999986543 5678999999999999999999999998774 347
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+.... .+..
T Consensus 142 ~iv~isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~ 208 (255)
T 3icc_A 142 RIINISSAATRISL------------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS-DPMM 208 (255)
T ss_dssp EEEEECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTT-SHHH
T ss_pred EEEEeCChhhccCC------------CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcc-cHHH
Confidence 99999999987764 6688999999999999999999999999999999999999999877543 2223
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
........+.+++.+|+|+|++++||+++ ...+++|++|.+|||..
T Consensus 209 ~~~~~~~~~~~~~~~~~dva~~~~~l~s~-~~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 209 KQYATTISAFNRLGEVEDIADTAAFLASP-DSRWVTGQLIDVSGGSC 254 (255)
T ss_dssp HHHHHHTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESSSTT
T ss_pred HHhhhccCCcCCCCCHHHHHHHHHHHhCc-ccCCccCCEEEecCCee
Confidence 33344455667889999999999999965 47899999999999975
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=318.46 Aligned_cols=243 Identities=22% Similarity=0.294 Sum_probs=205.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .+.++++|++|.++++++++++.
T Consensus 4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~~ 77 (270)
T 1yde_A 4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------GAVFILCDVTQEDDVKTLVSETI 77 (270)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------CCeEEEcCCCCHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999988776655542 36788999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+++|++|+||||||.... ..+.+.++|++.+++|+.|+++++++++|+|++ + .|+||+
T Consensus 78 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------------------~-~g~iv~ 138 (270)
T 1yde_A 78 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK------------------S-QGNVIN 138 (270)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------C-CCEEEE
Confidence 999999999999998642 256788999999999999999999999999972 2 489999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--Cch-hHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDS-WLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~-~~~ 370 (429)
+||.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++.+.... ... ...
T Consensus 139 isS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~ 206 (270)
T 1yde_A 139 ISSLVGAIGQ------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASI 206 (270)
T ss_dssp ECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHH
T ss_pred EcCccccCCC------------CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHH
Confidence 9999887764 5678999999999999999999999999999999999999998643211 011 111
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.......|.+++.+|+|+|++++||+++ ..++||+.|.+|||....
T Consensus 207 ~~~~~~~p~~r~~~p~dva~~v~~L~s~--~~~itG~~i~vdGG~~~~ 252 (270)
T 1yde_A 207 REGMLAQPLGRMGQPAEVGAAAVFLASE--ANFCTGIELLVTGGAELG 252 (270)
T ss_dssp HHHHHTSTTSSCBCHHHHHHHHHHHHHH--CTTCCSCEEEESTTTTSC
T ss_pred HHHhhcCCCCCCcCHHHHHHHHHHHccc--CCCcCCCEEEECCCeecc
Confidence 1112345667889999999999999975 479999999999997664
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=327.89 Aligned_cols=248 Identities=22% Similarity=0.237 Sum_probs=208.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC----------hhHHHHHHHHHhhhcCCceEEEEEeeCCCHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD----------LDKCEKARKEVVLESKNKYVLCRKCDLASQE 206 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~----------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~ 206 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.... .++.++++|++|.+
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWD 99 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHH
Confidence 557899999999999999999999999999999999998 677788777776543 47889999999999
Q ss_pred HHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 207 SIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 207 sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
+++++++++.+++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|.+.....
T Consensus 100 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~------------ 167 (322)
T 3qlj_A 100 QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAG------------ 167 (322)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccC------------
Confidence 99999999999999999999999987543 5678999999999999999999999999997532110
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
+...|+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+|| +.|++......
T Consensus 168 ~~~~g~IV~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~ 234 (322)
T 3qlj_A 168 KAVDGRIINTSSGAGLQGS------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA 234 (322)
T ss_dssp CCCCEEEEEECCHHHHHCB------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC
T ss_pred CCCCcEEEEEcCHHHccCC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh
Confidence 2235899999999988775 5688999999999999999999999999999999999 99998766432
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
. .. ..+.......+|+|+|++++||+++ ...++||++|.+|||....
T Consensus 235 ~--~~----~~~~~~~~~~~pedva~~v~~L~s~-~~~~itG~~i~vdGG~~~~ 281 (322)
T 3qlj_A 235 E--MM----ATQDQDFDAMAPENVSPLVVWLGSA-EARDVTGKVFEVEGGKIRV 281 (322)
T ss_dssp C--------------CCTTCGGGTHHHHHHHTSG-GGGGCCSCEEEEETTEEEE
T ss_pred h--hh----hccccccCCCCHHHHHHHHHHHhCc-cccCCCCCEEEECCCcccc
Confidence 1 11 1122223457999999999999965 4789999999999998663
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=318.94 Aligned_cols=238 Identities=27% Similarity=0.337 Sum_probs=192.3
Q ss_pred ccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 133 KYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 133 ~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
+..+..++++|++|||||++|||+++|++|+++|++|++++|+.++++ .+.++++|++|++++++++
T Consensus 12 ~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~Dl~d~~~v~~~~ 78 (253)
T 2nm0_A 12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------GFLAVKCDITDTEQVEQAY 78 (253)
T ss_dssp --------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTSHHHHHHHH
T ss_pred CCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-------------cceEEEecCCCHHHHHHHH
Confidence 334467889999999999999999999999999999999999875432 2567899999999999999
Q ss_pred HHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++.++++++|+||||||+.... .+.+.++|++++++|+.|+++++++++|.|+ +++.|+
T Consensus 79 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~~~~g~ 140 (253)
T 2nm0_A 79 KEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAML------------------RAKKGR 140 (253)
T ss_dssp HHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHH------------------HHTCEE
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCCE
Confidence 99999999999999999986433 4567889999999999999999999999997 345689
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|++.++.|+++.||+||+|+||+++|++.+.... ...
T Consensus 141 iv~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~ 205 (253)
T 2nm0_A 141 VVLISSVVGLLGS------------AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTD---EQR 205 (253)
T ss_dssp EEEECCCCCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------CH
T ss_pred EEEECchhhCCCC------------CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCH---HHH
Confidence 9999999887653 4567899999999999999999999999999999999999998764321 112
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....+.+++.+|+|+|++++|+++++ ..+++|++|.+|||...
T Consensus 206 ~~~~~~~p~~~~~~p~dvA~~i~~l~s~~-~~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 206 ANIVSQVPLGRYARPEEIAATVRFLASDD-ASYITGAVIPVDGGLGM 251 (253)
T ss_dssp HHHHTTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCcc-ccCCcCcEEEECCcccc
Confidence 22333455677899999999999999764 67899999999999754
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=312.83 Aligned_cols=240 Identities=23% Similarity=0.355 Sum_probs=193.8
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+..++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++.+|+++.+++++++++
T Consensus 7 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 7 HHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp --CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHh
Confidence 44678899999999999999999999999999999999999998888777663 2678889999999999887764
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|. +++.|+||
T Consensus 82 ----~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~g~iv 139 (249)
T 3f9i_A 82 ----TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMI------------------QKRYGRII 139 (249)
T ss_dssp ----CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEE
T ss_pred ----cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hCCCcEEE
Confidence 47899999999987543 4567889999999999999999999999997 44678999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||++.|++.+... +.....
T Consensus 140 ~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~ 204 (249)
T 3f9i_A 140 NISSIVGIAGN------------PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN---EKQREA 204 (249)
T ss_dssp EECCCCC--CC------------SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC---HHHHHH
T ss_pred EEccHHhccCC------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC---HHHHHH
Confidence 99999988764 668899999999999999999999999999999999999999987653 233344
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+....+.+++.+|+|+|++++||++++ ..+++|++|.+|||+..
T Consensus 205 ~~~~~~~~~~~~~~dva~~~~~l~s~~-~~~~tG~~~~vdgG~~~ 248 (249)
T 3f9i_A 205 IVQKIPLGTYGIPEDVAYAVAFLASNN-ASYITGQTLHVNGGMLM 248 (249)
T ss_dssp HHHHCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSSC
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHcCCc-cCCccCcEEEECCCEee
Confidence 555667788999999999999999654 67899999999999754
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=311.78 Aligned_cols=236 Identities=23% Similarity=0.263 Sum_probs=186.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+. .. . .+..+.+|++|.++++++++++.+
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~-~--~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQ-Y--PFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SC-C--SSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hc-C--CceEEEcCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998752 11 1 266789999999999999999999
Q ss_pred hCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+... ..+.+.++|++.+++|+.|+++++++++|+|+ +++.|+||++|
T Consensus 71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~------------------~~~~g~iv~is 132 (250)
T 2fwm_X 71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFR------------------RQRGGAIVTVA 132 (250)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEEC
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHH------------------hcCCCEEEEEC
Confidence 99999999999998643 35678899999999999999999999999997 34578999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH-HHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST-VVL 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~-~~~ 374 (429)
|.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++.+....... ... .+.
T Consensus 133 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~~~ 199 (250)
T 2fwm_X 133 SDAAHTPR------------IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDD-AEEQRIR 199 (250)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------
T ss_pred chhhCCCC------------CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChh-HHHHHHh
Confidence 99887654 5678999999999999999999999999999999999999998754321111 111 121
Q ss_pred h-------HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 K-------PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~-------~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. ..|.+++.+|+|+|++++||++++ ..+++|+.+.+|||...
T Consensus 200 ~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~~ 248 (250)
T 2fwm_X 200 GFGEQFKLGIPLGKIARPQEIANTILFLASDL-ASHITLQDIVVDGGSTL 248 (250)
T ss_dssp ----------------CHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTT
T ss_pred hhhhcccccCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCccc
Confidence 1 345667899999999999999764 67899999999999754
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=312.74 Aligned_cols=237 Identities=23% Similarity=0.279 Sum_probs=205.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.. .+.++++|++|+++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999888776666532 477889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~is 139 (260)
T 1nff_A 78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMK------------------EAGRGSIINIS 139 (260)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEEEe
Confidence 999999999999986533 5678899999999999999999999999998 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+++++++++++.|++++||+||+|+||++.|++.+ ... +.+ .
T Consensus 140 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~~~--~~~----~- 199 (260)
T 1nff_A 140 SIEGLAGT------------VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-WVP--EDI----F- 199 (260)
T ss_dssp CGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-TSC--TTC----S-
T ss_pred ehhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-cch--hhH----H-
Confidence 99887664 567899999999999999999999999999999999999999865 211 111 1
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.+++.+|+|+|++++|+++++ ..+++|+.+.+|||....
T Consensus 200 ~~~~~~~~~~~dvA~~v~~l~s~~-~~~~~G~~~~v~gG~~~~ 241 (260)
T 1nff_A 200 QTALGRAAEPVEVSNLVVYLASDE-SSYSTGAEFVVDGGTVAG 241 (260)
T ss_dssp CCSSSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGS
T ss_pred hCccCCCCCHHHHHHHHHHHhCcc-ccCCcCCEEEECCCeecc
Confidence 234567889999999999999654 678999999999997653
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=307.99 Aligned_cols=232 Identities=22% Similarity=0.335 Sum_probs=197.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|+++++++++++.++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999888888776532 36888999999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|+|. +++ |+||++||
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~-g~iv~isS 142 (247)
T 2jah_A 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLL------------------RSK-GTVVQMSS 142 (247)
T ss_dssp HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHT-CEEEEECC
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HCC-CEEEEEcc
Confidence 9999999999998643 25678999999999999999999999999997 334 99999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++...... +.... ....
T Consensus 143 ~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~-~~~~ 207 (247)
T 2jah_A 143 IAGRVNV------------RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH--TATKE-MYEQ 207 (247)
T ss_dssp GGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC--HHHHH-HHHH
T ss_pred HHhcCCC------------CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc--hhhHH-HHHh
Confidence 9887664 5678999999999999999999999999999999999999998765431 11111 1222
Q ss_pred Hhhhcc--CCHHHHHHHHHHHhcCCCcccCCceE
Q psy12836 377 LVWLFI--KSPRQGAQTIVYASLDPSLENVSGKY 408 (429)
Q Consensus 377 ~~~~~~--~~peevA~~iv~l~~~~~~~~vtG~~ 408 (429)
.+ +++ .+|+|+|++++|+++++ ..+++|+.
T Consensus 208 ~~-~~~~~~~pedvA~~v~~l~s~~-~~~~~~~i 239 (247)
T 2jah_A 208 RI-SQIRKLQAQDIAEAVRYAVTAP-HHATVHEI 239 (247)
T ss_dssp HT-TTSCCBCHHHHHHHHHHHHHSC-TTEEEEEE
T ss_pred cc-cccCCCCHHHHHHHHHHHhCCC-ccCccceE
Confidence 23 445 89999999999999875 45666664
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=310.84 Aligned_cols=235 Identities=27% Similarity=0.329 Sum_probs=196.4
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|+++.++++++++++
T Consensus 23 ~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~ 100 (262)
T 3rkr_A 23 HMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGV 100 (262)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999998888876543 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+.+|++|+||||||+.. +..+.+.++|++++++|+.|++++++.++|.|+ +++.|+||
T Consensus 101 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------------------~~~~g~iv 162 (262)
T 3rkr_A 101 LAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMI------------------AAKRGHII 162 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCCEEE
T ss_pred HHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCceEE
Confidence 999999999999999843 235678999999999999999999999999998 45679999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++......
T Consensus 163 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------- 222 (262)
T 3rkr_A 163 NISSLAGKNPV------------ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSA-------- 222 (262)
T ss_dssp EECSSCSSCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------
T ss_pred EEechhhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccccc--------
Confidence 99999987764 6688999999999999999999999999999999999999998765431
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..+..+..+|+|+|++++||++++ ...++|+.+..+.+
T Consensus 223 ---~~~~~~~~~p~dvA~~v~~l~s~~-~~~~~g~~~i~p~~ 260 (262)
T 3rkr_A 223 ---KKSALGAIEPDDIADVVALLATQA-DQSFISEVLVRPTL 260 (262)
T ss_dssp ---------CCCHHHHHHHHHHHHTCC-TTCCEEEEEEECCC
T ss_pred ---ccccccCCCHHHHHHHHHHHhcCc-cccccCcEEecccc
Confidence 122346779999999999999776 56788988776654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=314.44 Aligned_cols=236 Identities=19% Similarity=0.279 Sum_probs=197.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++.+|++|||||++|||+++|++|+++|++|++++|+.+++++.. ...+.++++|++|.++++++++++.+
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN--------LPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC--------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh--------cCCceEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999987654321 12578899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~~~~g~IV~is 145 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMK------------------ARNCGTIINIS 145 (266)
T ss_dssp HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEEC
T ss_pred HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 999999999999986533 5678999999999999999999999999998 44679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH-
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL- 374 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~- 374 (429)
|.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... ........
T Consensus 146 S~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~ 211 (266)
T 3p19_A 146 SIAGKKTF------------PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS--QQIKDGYDA 211 (266)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC--HHHHHHHHH
T ss_pred ChhhCCCC------------CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc--hhhhHHHHh
Confidence 99988764 6688999999999999999999999999999999999999999876542 22222222
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
...+.+++.+|+|+|++++|+++++. ..+.++.+....+
T Consensus 212 ~~~~~~r~~~pedvA~av~~l~~~~~-~~~~~~i~i~p~~ 250 (266)
T 3p19_A 212 WRVDMGGVLAADDVARAVLFAYQQPQ-NVCIREIALAPTK 250 (266)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHSCT-TEEEEEEEEEETT
T ss_pred hcccccCCCCHHHHHHHHHHHHcCCC-CccceeeEEecCC
Confidence 23466789999999999999998874 4556666544443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=314.77 Aligned_cols=234 Identities=24% Similarity=0.326 Sum_probs=196.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++. ..+++|++|.++++++++++.
T Consensus 10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-------------~~~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-------------FGVEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-------------EEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh-------------cCeeccCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999987643211 137899999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++
T Consensus 77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~i 138 (247)
T 1uzm_A 77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQ------------------RNKFGRMIFI 138 (247)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCCEEEEE
Confidence 9999999999999986533 5678999999999999999999999999998 4467999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+... +.....+.
T Consensus 139 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~ 203 (247)
T 1uzm_A 139 GSVSGLWGI------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD---ERIQQGAL 203 (247)
T ss_dssp CCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC---HHHHHHHG
T ss_pred CCHhhccCC------------CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcC---HHHHHHHH
Confidence 999887664 567899999999999999999999999999999999999999865432 22223333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+++.+|+|+|++++||+++ ...+++|++|.+|||...
T Consensus 204 ~~~p~~~~~~~~dvA~~~~~l~s~-~~~~~~G~~i~vdgG~~~ 245 (247)
T 1uzm_A 204 QFIPAKRVGTPAEVAGVVSFLASE-DASYISGAVIPVDGGMGM 245 (247)
T ss_dssp GGCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCc-cccCCcCCEEEECCCccc
Confidence 445667789999999999999965 467899999999999754
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=314.37 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=204.1
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++....+ .+.++++|++|.++++++++++.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~ 94 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLE 94 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHH
Confidence 4889999999999 99999999999999999999999985 4444555544333 25678999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 217 KENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+++|++|+||||||+... ..+.+.++|++.+++|+.|++++++.++|.|. + ..|+
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~-~~g~ 155 (285)
T 2p91_A 95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLME------------------G-RNGA 155 (285)
T ss_dssp HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGT------------------T-SCCE
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------H-cCCE
Confidence 999999999999998642 24678899999999999999999999999885 3 3589
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... .+...
T Consensus 156 iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~~ 222 (285)
T 2p91_A 156 IVTLSYYGAEKVV------------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITG-FHLLM 222 (285)
T ss_dssp EEEEECGGGTSBC------------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTT-HHHHH
T ss_pred EEEEccchhccCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccc-hHHHH
Confidence 9999998887654 5677899999999999999999999999999999999999998765321 12222
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+....|.+++.+|+|+|++++|++++ ...+++|+++.+|||....
T Consensus 223 ~~~~~~~p~~~~~~~~dva~~~~~l~s~-~~~~~tG~~~~vdgg~~~~ 269 (285)
T 2p91_A 223 EHTTKVNPFGKPITIEDVGDTAVFLCSD-WARAITGEVVHVDNGYHIM 269 (285)
T ss_dssp HHHHHHSTTSSCCCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGB
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHcCC-cccCCCCCEEEECCCcccc
Confidence 3333445667789999999999999965 4678999999999997654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=314.04 Aligned_cols=245 Identities=25% Similarity=0.313 Sum_probs=199.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++|++|||||++|||+++|++|+++|++|+++ +|+.+.+++..+++.... .++.++++|++|.++++++++++.++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999887 788888887777775543 47889999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|.+.. ....|+||++|
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---------------~~~~g~iv~is 166 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLY---------------SGQGGAIVNVS 166 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGG---------------TCCCEEEEEEC
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---------------cCCCCEEEEEc
Confidence 9999999999998653 25678999999999999999999999999996321 23568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+.. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++...... +.....+..
T Consensus 167 S~~~~~~~~-----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~ 233 (272)
T 4e3z_A 167 SMAAILGSA-----------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGL--PDRAREMAP 233 (272)
T ss_dssp CTHHHHCCT-----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------
T ss_pred chHhccCCC-----------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCC--hHHHHHHhh
Confidence 999887641 3567899999999999999999999999999999999999998765321 112233444
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+..+..+|+|+|++++|++++ ...+++|++|.+|||.
T Consensus 234 ~~~~~~~~~~edvA~~i~~l~s~-~~~~~tG~~i~vdgG~ 272 (272)
T 4e3z_A 234 SVPMQRAGMPEEVADAILYLLSP-SASYVTGSILNVSGGR 272 (272)
T ss_dssp CCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTC
T ss_pred cCCcCCCcCHHHHHHHHHHHhCC-ccccccCCEEeecCCC
Confidence 55667788999999999999965 4678999999999984
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=309.41 Aligned_cols=232 Identities=26% Similarity=0.328 Sum_probs=200.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeC--CCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL--ASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl--s~~~sv~~~~~~ 214 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... ....++.+|+ ++.+++++++++
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ-PQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS-CCCEEEECCTTTCCHHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-CCceEEEeccccCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999998888876542 2455666666 999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+.+|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|+|+ +++.|+|
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~~~i 149 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLK------------------RSEDASI 149 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TSSSEEE
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCCeE
Confidence 99999999999999998643 25678999999999999999999999999997 5567999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC-CCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG-TGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
|++||..+..+. ++..+|++||+|+++|+++|+.|+++ .||+||+|+||+++|+|.......
T Consensus 150 v~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~~~----- 212 (247)
T 3i1j_A 150 AFTSSSVGRKGR------------ANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPD----- 212 (247)
T ss_dssp EEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHSTT-----
T ss_pred EEEcchhhcCCC------------CCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcccc-----
Confidence 999999987764 66889999999999999999999987 899999999999999986532210
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
....+..+|+|+|++++||+++ +..++||+.|.+
T Consensus 213 ------~~~~~~~~p~dva~~~~~l~s~-~~~~itG~~i~~ 246 (247)
T 3i1j_A 213 ------ENPLNNPAPEDIMPVYLYLMGP-DSTGINGQALNA 246 (247)
T ss_dssp ------SCGGGSCCGGGGTHHHHHHHSG-GGTTCCSCEEEC
T ss_pred ------cCccCCCCHHHHHHHHHHHhCc-hhccccCeeecC
Confidence 1113567899999999999965 578999999875
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=313.33 Aligned_cols=243 Identities=24% Similarity=0.285 Sum_probs=205.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.++ +.++.++++|++|.++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999998754 13567889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|+ +++.|+||++|
T Consensus 71 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~is 132 (264)
T 2dtx_A 71 EYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMI------------------RSRDPSIVNIS 132 (264)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TSSSCEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HcCCcEEEEEC
Confidence 999999999999986533 5678899999999999999999999999997 55679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----Cch----
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDS---- 367 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~~---- 367 (429)
|.++..+. ++..+|++||+++++|+++++.|+++. |+||+|+||+++|++...... ..+
T Consensus 133 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~ 199 (264)
T 2dtx_A 133 SVQASIIT------------KNASAYVTSKHAVIGLTKSIALDYAPL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIE 199 (264)
T ss_dssp CGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHH
T ss_pred CchhccCC------------CCchhHHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhH
Confidence 99887654 567899999999999999999999998 999999999999998654210 001
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFSF 425 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~~~~ 425 (429)
.....+....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||.....+...+.
T Consensus 200 ~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~~~~p~~~~~ 256 (264)
T 2dtx_A 200 KKISEWGHEHPMQRIGKPQEVASAVAFLASRE-ASFITGTCLYVDGGLSIRAPISTPE 256 (264)
T ss_dssp HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGCCCCCCCC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCch-hcCCCCcEEEECCCcccCCCCCCcc
Confidence 12222333456677899999999999999654 6789999999999987766554443
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=312.65 Aligned_cols=244 Identities=17% Similarity=0.123 Sum_probs=205.0
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++....+ .+.++++|++|+++++++++++
T Consensus 4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~ 80 (261)
T 2wyu_A 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEELDALFAGV 80 (261)
T ss_dssp ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHH
Confidence 46789999999999 99999999999999999999999975 3444445544333 3678899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 216 KKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.+++|++|+||||||+... ..+.+.++|++.+++|+.|+++++++++|.|+ + .|
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g 140 (261)
T 2wyu_A 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLR------------------E--GG 140 (261)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE------------------E--EE
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhc------------------c--CC
Confidence 9999999999999998642 34678999999999999999999999998774 2 48
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|.|++.+.... .+..
T Consensus 141 ~iv~isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~ 207 (261)
T 2wyu_A 141 GIVTLTYYASEKVV------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG-FTKM 207 (261)
T ss_dssp EEEEEECGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTT-HHHH
T ss_pred EEEEEecccccCCC------------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccc-cHHH
Confidence 99999998887654 5678999999999999999999999999999999999999998765321 1222
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...+....|.+++.+|+|+|++++||+++ ...+++|+.|.+|||....
T Consensus 208 ~~~~~~~~p~~~~~~~~dva~~v~~l~s~-~~~~~tG~~~~vdgG~~~~ 255 (261)
T 2wyu_A 208 YDRVAQTAPLRRNITQEEVGNLGLFLLSP-LASGITGEVVYVDAGYHIM 255 (261)
T ss_dssp HHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGB
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHcCh-hhcCCCCCEEEECCCcccc
Confidence 23344455667889999999999999965 4678999999999998764
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=323.22 Aligned_cols=236 Identities=22% Similarity=0.279 Sum_probs=202.7
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-------HHHHHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-------CEKARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-------~~~~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
+...+++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++.... .++.++++|++|+++
T Consensus 38 ~~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~ 115 (346)
T 3kvo_A 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQ 115 (346)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHH
T ss_pred ccCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHH
Confidence 44678999999999999999999999999999999999999874 455666665433 478899999999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
++++++++.+++|+||+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +
T Consensus 116 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~------------------~ 177 (346)
T 3kvo_A 116 ISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLK------------------K 177 (346)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHT------------------T
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------H
Confidence 9999999999999999999999986533 6678999999999999999999999999997 5
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-ccCCcccCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGI-VNTDILRHSSY 364 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~-v~T~~~~~~~~ 364 (429)
++.|+||++||..+..+.. +++..+|++||+|+++|++.|+.|++ .||+||+|+||+ ++|++.+...
T Consensus 178 ~~~g~IV~iSS~~~~~~~~----------~~~~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~~~~- 245 (346)
T 3kvo_A 178 SKVAHILNISPPLNLNPVW----------FKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLG- 245 (346)
T ss_dssp CSSCEEEEECCCCCCCGGG----------TSSSHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSBCBCCHHHHHHC-
T ss_pred CCCCEEEEECCHHHcCCCC----------CCCchHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCccccHHHHhhc-
Confidence 6779999999998876521 25678999999999999999999999 999999999994 9998754322
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+..+..+|+|+|++++||+++ ..++||++| +||+.
T Consensus 246 ----------~~~~~~r~~~pedvA~~v~~L~s~--~~~itG~~i-vdgg~ 283 (346)
T 3kvo_A 246 ----------GPGIESQCRKVDIIADAAYSIFQK--PKSFTGNFV-IDENI 283 (346)
T ss_dssp ----------C--CGGGCBCTHHHHHHHHHHHTS--CTTCCSCEE-EHHHH
T ss_pred ----------cccccccCCCHHHHHHHHHHHHhc--CCCCCceEE-ECCcE
Confidence 122346788999999999999976 678999999 88874
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=312.70 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=203.5
Q ss_pred CCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++||++|||||+ +|||+++|++|+++|++|++++|+. +.++..+++....+. ..++++|++|+++++++++++.
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGS--DIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCC--cEEEEccCCCHHHHHHHHHHHH
Confidence 4789999999999 9999999999999999999999987 444445555444332 3678999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC------CCC-CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 217 KENKKINVLINNAGVSGC------RKM-LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~------~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
+++|++|+||||||+... ..+ .+.++|++++++|+.|+++++++++|.|. + .|
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g 142 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN------------------P--GS 142 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------E--EE
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhc------------------c--CC
Confidence 999999999999998642 134 78899999999999999999999998874 2 48
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+.... .+..
T Consensus 143 ~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-~~~~ 209 (265)
T 1qsg_A 143 ALLTLSYLGAERAI------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKD-FRKM 209 (265)
T ss_dssp EEEEEECGGGTSBC------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTT-HHHH
T ss_pred EEEEEcchhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccc-cHHH
Confidence 99999998887654 5677999999999999999999999999999999999999998765431 1222
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+.+....|.+++.+|+|+|++++|++++ ...+++|+.|.+|||...+
T Consensus 210 ~~~~~~~~p~~~~~~~~dva~~v~~l~s~-~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 210 LAHCEAVTPIRRTVTIEDVGNSAAFLCSD-LSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp HHHHHHHSTTSSCCCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGB
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCc-hhcCccCCEEEECCCcCCC
Confidence 23333445667889999999999999965 4678999999999998765
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=320.67 Aligned_cols=246 Identities=41% Similarity=0.565 Sum_probs=198.5
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.+++++++++
T Consensus 9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 9 ADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHT
T ss_pred hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHh
Confidence 3467899999999999999999999999999999999999998887766554 34789999999999999999887
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+ +++|+||||||+..+....+.+++++++++|+.|+++++++++|.|. ++||++
T Consensus 84 ~----~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~----------------------~riv~i 137 (291)
T 3rd5_A 84 V----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLT----------------------DRVVTV 137 (291)
T ss_dssp C----CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEE----------------------EEEEEE
T ss_pred c----CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hheeEe
Confidence 6 79999999999987667778899999999999999999999998774 389999
Q ss_pred cCcccccCCCCcccCCC-CCCCCCcchhHHHHHHHHHHHHHHHHHhcCCC--eEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNS-ENSYDPTQAYNQSKLANVLFTRELAKRLEGTG--ITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~-~~~~~~~~~Y~aSKaal~~l~~~la~el~~~g--IrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
||.++..+.....++.. ...+++..+|++||+|+++|++.++.|++++| |+||+|+||+|+|++.+.... ....
T Consensus 138 sS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~---~~~~ 214 (291)
T 3rd5_A 138 SSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGR---KLGD 214 (291)
T ss_dssp CCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-------------
T ss_pred echhhccCCCCcccccccccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccch---HHHH
Confidence 99998877655444443 24567788999999999999999999999888 999999999999999876532 1112
Q ss_pred HHHhHHhhhcc-CCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 372 VVLKPLVWLFI-KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 372 ~~~~~~~~~~~-~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.+.. .+..+. .+|+|+|++++|+++++ +++|++|.+|||+...
T Consensus 215 ~~~~-~~~~~~~~~~~~~A~~~~~l~~~~---~~~G~~~~vdgG~~~~ 258 (291)
T 3rd5_A 215 ALMS-AATRVVATDADFGARQTLYAASQD---LPGDSFVGPRFGYLGR 258 (291)
T ss_dssp -----------CHHHHHHHHHHHHHHHSC---CCTTCEEEETTSSSSC
T ss_pred HHHH-HHHHHHhCCHHHHHHHHHHHHcCC---CCCCceeCCcccccCc
Confidence 1222 223333 45999999999999874 7899999999987654
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=314.89 Aligned_cols=242 Identities=15% Similarity=0.100 Sum_probs=199.6
Q ss_pred CCCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhHH-HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKC-EKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 138 ~~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+++||++||||| ++|||+++|++|+++|++|++++|+.++. ++..+++ +.++.++++|++|++++++++++
T Consensus 3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~ 77 (269)
T 2h7i_A 3 GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-----PAKAPLLELDVQNEEHLASLAGR 77 (269)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-----SSCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-----CCCceEEEccCCCHHHHHHHHHH
Confidence 3578999999999 99999999999999999999999988653 4333322 23567889999999999999999
Q ss_pred HHHhCC---CeeEEEEccccCC-------CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 215 VKKENK---KINVLINNAGVSG-------CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 215 i~~~~g---~iD~lI~nAG~~~-------~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
+.+++| ++|+||||||+.. +..+.+.++|++.+++|+.|++++++.++|+|.
T Consensus 78 ~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------ 139 (269)
T 2h7i_A 78 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMN------------------ 139 (269)
T ss_dssp HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------
T ss_pred HHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhc------------------
Confidence 999999 9999999999864 225678899999999999999999999999875
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
+ .|+||++||.++ .+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++.+....
T Consensus 140 ~--~g~iv~iss~~~-~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~ 204 (269)
T 2h7i_A 140 P--GGSIVGMDFDPS-RAM------------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVG 204 (269)
T ss_dssp E--EEEEEEEECCCS-SCC------------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHT
T ss_pred c--CCeEEEEcCccc-ccc------------CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhcccc
Confidence 2 389999999765 332 5678999999999999999999999999999999999999998653210
Q ss_pred --Cchh-------HHHHHHhHHhhh-ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 --YDSW-------LSTVVLKPLVWL-FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 --~~~~-------~~~~~~~~~~~~-~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+. ..+.+....|.+ ++.+|+|+|++++||+++ .+.++||+.|.+|||+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~-~~~~itG~~i~vdGG~~~~ 267 (269)
T 2h7i_A 205 GALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSD-WLPATTGDIIYADGGAHTQ 267 (269)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSS-SCTTCCSEEEEESTTGGGC
T ss_pred ccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCc-hhccCcceEEEecCCeeee
Confidence 0111 112233445666 689999999999999975 4789999999999997654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=309.44 Aligned_cols=236 Identities=25% Similarity=0.277 Sum_probs=195.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++.. ++ . ++.++++|++|.++++ ++.+.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~----~--~~~~~~~D~~~~~~~~----~~~~~ 71 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY----P--GIQTRVLDVTKKKQID----QFANE 71 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS----T--TEEEEECCTTCHHHHH----HHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc----c--CceEEEeeCCCHHHHH----HHHHH
Confidence 578999999999999999999999999999999999987765433 22 1 5778899999999988 44456
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||+.... .+.+.++|++.+++|+.|++++++.++|+|+ +++.|+||++||
T Consensus 72 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS 133 (246)
T 2ag5_A 72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKML------------------AQKSGNIINMSS 133 (246)
T ss_dssp CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCceEEEEec
Confidence 78999999999986543 5578899999999999999999999999997 345689999999
Q ss_pred cccccCCCCcccCCCCCCCC-CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYD-PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTV 372 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~-~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~ 372 (429)
.++..+. + +..+|++||+++++++++++.|++++||+||+|+||++.|++..... ...+.....
T Consensus 134 ~~~~~~~------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~ 201 (246)
T 2ag5_A 134 VASSVKG------------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARND 201 (246)
T ss_dssp SBTTTBC------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHH
T ss_pred hHhCcCC------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHH
Confidence 9887653 3 67899999999999999999999999999999999999999864310 001112222
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+....+.+++.+|+|+|++++||++++ ..+++|+.|.+|||+.
T Consensus 202 ~~~~~~~~~~~~~~dvA~~v~~l~s~~-~~~~tG~~i~vdgG~~ 244 (246)
T 2ag5_A 202 FLKRQKTGRFATAEEIAMLCVYLASDE-SAYVTGNPVIIDGGWS 244 (246)
T ss_dssp HHHTCTTSSCEEHHHHHHHHHHHHSGG-GTTCCSCEEEECTTGG
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCcc
Confidence 333446677889999999999999654 6789999999999965
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=307.36 Aligned_cols=248 Identities=23% Similarity=0.273 Sum_probs=202.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.
T Consensus 7 ~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 7 CRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999998887766665 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCCC--------CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 217 KENKKINVLINNAGVSGCRK--------MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~--------~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
++++++|+||||||...... +.+.+++++.+++|+.+++++++.+.|.|.++... ...+.
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~------------~~~~~ 149 (265)
T 2o23_A 82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPD------------QGGQR 149 (265)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCC------------TTSCC
T ss_pred HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc------------cCCCC
Confidence 99999999999999865431 36889999999999999999999999999732100 01156
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
++||++||.++..+. ++..+|++||+|++++++.++.|++++||+||+|+||++.|++.+.... .
T Consensus 150 ~~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~ 214 (265)
T 2o23_A 150 GVIINTASVAAFEGQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---K 214 (265)
T ss_dssp EEEEEECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------
T ss_pred cEEEEeCChhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH---H
Confidence 899999999887664 5678999999999999999999999999999999999999998765321 1
Q ss_pred HHHHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 369 LSTVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 369 ~~~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
....+....+. +++.+|+|+|+++++++++ .+++|+.+.+|||+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~---~~~~G~~i~vdgG~~~~~ 263 (265)
T 2o23_A 215 VCNFLASQVPFPSRLGDPAEYAHLVQAIIEN---PFLNGEVIRLDGAIRMQP 263 (265)
T ss_dssp --CHHHHTCSSSCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCCCC
T ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhhc---CccCceEEEECCCEecCC
Confidence 11122233444 6788999999999999953 578999999999987653
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=302.88 Aligned_cols=240 Identities=24% Similarity=0.338 Sum_probs=207.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
||++|||||++|||+++|++|+++|++|+++ +|+.++.++..+++.... .++.++++|++|.++++++++++.+.++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999994 899888887777765443 3688899999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|. +++.++||++||.+
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~iv~~sS~~ 140 (244)
T 1edo_A 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMM------------------KKRKGRIINIASVV 140 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCTH
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hcCCCEEEEECChh
Confidence 999999999987543 4568899999999999999999999999997 34568999999998
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++..+|++||++++++++.++.|++++||+||+|+||++.|++.+... +.....+....+
T Consensus 141 ~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~ 205 (244)
T 1edo_A 141 GLIGN------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG---EDMEKKILGTIP 205 (244)
T ss_dssp HHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---HHHHHHHHTSCT
T ss_pred hcCCC------------CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcC---hHHHHHHhhcCC
Confidence 87764 567899999999999999999999999999999999999999876543 222233334455
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+++.+|+|+|+++++++.++...+++|+.|.+|||..
T Consensus 206 ~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~~ 243 (244)
T 1edo_A 206 LGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp TCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred CCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCcc
Confidence 66788999999999999966667889999999999864
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=308.81 Aligned_cols=250 Identities=22% Similarity=0.248 Sum_probs=191.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|+++.++++++++++
T Consensus 8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 85 (266)
T 1xq1_A 8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTV 85 (266)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999988888777775542 36888999999999999999999
Q ss_pred HHhC-CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKEN-KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~-g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+.+ +++|+||||||..... .+.+.++|++.+++|+.+++++++.++|.|+ +.+.++||
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~iv 147 (266)
T 1xq1_A 86 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLK------------------ASGCGNII 147 (266)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHSSCEEE
T ss_pred HHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEE
Confidence 9998 8999999999986432 5568899999999999999999999999997 34568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++...|++||++++.+++.++.|++++||+||+|+||++.|++.+... .+.....
T Consensus 148 ~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~ 213 (266)
T 1xq1_A 148 FMSSIAGVVSA------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--DDEFKKV 213 (266)
T ss_dssp EEC----------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------
T ss_pred EEccchhccCC------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--CHHHHHH
Confidence 99999887654 557899999999999999999999999999999999999999876532 1112222
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+....+.+++.+|+|+|++++++++++ ..+++|+.+.++||......
T Consensus 214 ~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~~~~~ 260 (266)
T 1xq1_A 214 VISRKPLGRFGEPEEVSSLVAFLCMPA-ASYITGQTICVDGGLTVNGF 260 (266)
T ss_dssp ----------CCGGGGHHHHHHHTSGG-GTTCCSCEEECCCCEEETTE
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHcCcc-ccCccCcEEEEcCCcccccc
Confidence 333455567889999999999999653 67899999999999876543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=308.42 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=195.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-E--cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-C--RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~-~--R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
||++|||||++|||+++|++|+++|++|+++ + |+.+++++..+++ .+ +|+.|.++++++++++.++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~----~~-------~~~~~~~~v~~~~~~~~~~ 69 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN----PG-------TIALAEQKPERLVDATLQH 69 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS----TT-------EEECCCCCGGGHHHHHGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh----CC-------CcccCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 6 9998887776654 11 2334778889999999999
Q ss_pred CCCeeEEEEccccCCC-----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 219 NKKINVLINNAGVSGC-----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~-----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+|++|+||||||+... ..+.+.++|++++++|+.|+++++++++|.|+ +++.|+||+
T Consensus 70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~~~~g~iv~ 131 (244)
T 1zmo_A 70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLR------------------AAGGASVIF 131 (244)
T ss_dssp SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEE
Confidence 9999999999998644 35678999999999999999999999999998 456799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc---cCCCCCchhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL---RHSSYYDSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~---~~~~~~~~~~~ 370 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++. +.... +...
T Consensus 132 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~--~~~~ 197 (244)
T 1zmo_A 132 ITSSVGKKPL------------AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWEN--NPEL 197 (244)
T ss_dssp ECCGGGTSCC------------TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHH--CHHH
T ss_pred ECChhhCCCC------------CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccc--hHHH
Confidence 9999887664 56789999999999999999999999999999999999999987 43210 1112
Q ss_pred HHHHh-HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLK-PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~-~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.. ..|.+++.+|+|+|++++||+++. ..++||++|.+|||..+
T Consensus 198 ~~~~~~~~p~~r~~~pe~vA~~v~~l~s~~-~~~~tG~~i~vdgG~~p 244 (244)
T 1zmo_A 198 RERVDRDVPLGRLGRPDEMGALITFLASRR-AAPIVGQFFAFTGGYLP 244 (244)
T ss_dssp HHHHHHHCTTCSCBCHHHHHHHHHHHHTTT-TGGGTTCEEEESTTCCC
T ss_pred HHHHhcCCCCCCCcCHHHHHHHHHHHcCcc-ccCccCCEEEeCCCCCC
Confidence 22333 456678899999999999999754 78999999999999753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=304.86 Aligned_cols=248 Identities=25% Similarity=0.291 Sum_probs=209.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 80 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999 8887777777765432 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~ 293 (429)
++++++|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|. +++ .++||+
T Consensus 81 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~~iv~ 142 (261)
T 1gee_A 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFV------------------ENDIKGTVIN 142 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCCCEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hCCCCCEEEE
Confidence 9999999999999986533 4578899999999999999999999999997 334 689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+. ++..+|++||+|++++++.++.|++++||+||+|+||++.|++.+.... .+.....+
T Consensus 143 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~ 209 (261)
T 1gee_A 143 MSSVHEKIPW------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA-DPEQRADV 209 (261)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH-SHHHHHHH
T ss_pred eCCHHhcCCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc-ChhHHHHH
Confidence 9998876653 5678999999999999999999999999999999999999998654311 11122223
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
....+.+++.+|+|+|+++++++++ ...+++|+.|.+|||....+
T Consensus 210 ~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~~G~~~~v~gg~~~~~ 254 (261)
T 1gee_A 210 ESMIPMGYIGEPEEIAAVAAWLASS-EASYVTGITLFADGGMTLYP 254 (261)
T ss_dssp HTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCG
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCc-cccCCCCcEEEEcCCcccCC
Confidence 3344556788999999999999965 36789999999999987653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=308.85 Aligned_cols=244 Identities=26% Similarity=0.370 Sum_probs=207.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|++|.++++++++++.
T Consensus 39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 39 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999998888877777543 2368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||+.... .+.+.+++++.+++|+.|++++++.++|.|. +++.++||++
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~~~iv~i 178 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMI------------------NNRYGRIINI 178 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCCEEEEE
Confidence 9999999999999986433 5678899999999999999999999999997 3456899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+++++++++++.|+++.||+||+|+||++.|++..... +.....+.
T Consensus 179 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~ 243 (285)
T 2c07_A 179 SSIVGLTGN------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKIS---EQIKKNII 243 (285)
T ss_dssp CCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CC---HHHHHHHH
T ss_pred CChhhccCC------------CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcC---HHHHHHHH
Confidence 999887764 567899999999999999999999999999999999999999876532 22323333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
...+.+++.+|+|+|++++++++++ ..+++|+.|.+|||..
T Consensus 244 ~~~~~~~~~~~~dvA~~~~~l~~~~-~~~~~G~~i~v~gG~~ 284 (285)
T 2c07_A 244 SNIPAGRMGTPEEVANLACFLSSDK-SGYINGRVFVIDGGLS 284 (285)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSC
T ss_pred hhCCCCCCCCHHHHHHHHHHHhCCC-cCCCCCCEEEeCCCcc
Confidence 4455667889999999999999654 6789999999999964
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=303.23 Aligned_cols=247 Identities=22% Similarity=0.256 Sum_probs=208.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 8 ~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 85 (260)
T 3awd_A 8 KLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVH 85 (260)
T ss_dssp GGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999988887777775533 368899999999999999999999
Q ss_pred HhCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++++|+||||||... +..+.+.+++++.+++|+.+++++++.+.|.|. +++.++||+
T Consensus 86 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~ 147 (260)
T 3awd_A 86 EQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIML------------------EQKQGVIVA 147 (260)
T ss_dssp HHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHh------------------hcCCCEEEE
Confidence 99999999999999864 225678899999999999999999999999997 345689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCccc-CCCCCchhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR-HSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~-~~~~~~~~~~~~ 372 (429)
+||.++..+.+. .+...|++||++++.+++.++.|++++||+||+|+||++.|++.+ ... .+.....
T Consensus 148 ~sS~~~~~~~~~----------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~ 215 (260)
T 3awd_A 148 IGSMSGLIVNRP----------QQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME--KPELYDA 215 (260)
T ss_dssp ECCGGGTSCCSS----------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT--CHHHHHH
T ss_pred EecchhcccCCC----------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC--ChHHHHH
Confidence 999988765311 123789999999999999999999999999999999999999875 221 1222233
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+....+.+++.+|+|+|++++++++++ ..+++|+.|.++||..
T Consensus 216 ~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~ 258 (260)
T 3awd_A 216 WIAGTPMGRVGQPDEVASVVQFLASDA-ASLMTGAIVNVDAGFT 258 (260)
T ss_dssp HHHTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTT
T ss_pred HHhcCCcCCCCCHHHHHHHHHHHhCch-hccCCCcEEEECCcee
Confidence 334455667889999999999999654 5789999999999964
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=329.69 Aligned_cols=245 Identities=16% Similarity=0.126 Sum_probs=198.9
Q ss_pred CCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChh---------HHHHHHHHHhh-hcCCceEEEEEeeCCCH--H
Q psy12836 141 RGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLD---------KCEKARKEVVL-ESKNKYVLCRKCDLASQ--E 206 (429)
Q Consensus 141 ~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~---------~~~~~~~~l~~-~~~~~~v~~~~~Dls~~--~ 206 (429)
++|++|||||++ |||+++|++|+++|++|++++|+.. +++...+.+.. ......+.+++||+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 479999999986 9999999999999999998877652 22221111111 11123478889999988 7
Q ss_pred ------------------HHHHHHHHHHHhCCCeeEEEEccccC----CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHH
Q psy12836 207 ------------------SIRAFAEEVKKENKKINVLINNAGVS----GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDK 264 (429)
Q Consensus 207 ------------------sv~~~~~~i~~~~g~iD~lI~nAG~~----~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 264 (429)
+++++++++.+++|+||+||||||+. .+..+.+.++|++++++|+.|+++++++++|+
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999974 23366799999999999999999999999999
Q ss_pred HHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcc-hhHHHHHHHHHHHHHHHHHhcC-C
Q psy12836 265 LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ-AYNQSKLANVLFTRELAKRLEG-T 342 (429)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~-~Y~aSKaal~~l~~~la~el~~-~ 342 (429)
|+ ++ |+||++||.++..+. ++.. +|++||+|+.+|+++|+.|+++ +
T Consensus 161 m~------------------~~--g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~~~~~la~el~~~~ 208 (329)
T 3lt0_A 161 MK------------------PQ--SSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNY 208 (329)
T ss_dssp EE------------------EE--EEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh------------------hC--CeEEEEeCccccCCC------------CcchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 86 32 899999999987764 4554 8999999999999999999998 8
Q ss_pred CeEEEEEeCCCccCCcccCCCCCch------------------------------------------hHHHHHHhHHhhh
Q psy12836 343 GITVNAVHPGIVNTDILRHSSYYDS------------------------------------------WLSTVVLKPLVWL 380 (429)
Q Consensus 343 gIrVn~V~PG~v~T~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~ 380 (429)
||+||+|+||+|+|+|.+......+ +.........|.+
T Consensus 209 gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 288 (329)
T 3lt0_A 209 NIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLR 288 (329)
T ss_dssp CCEEEEEEECCCCCHHHHTCC------------------------------------------CHHHHHHHHHHHHSSSC
T ss_pred CeEEEEEecceeechhHhhhhhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCccc
Confidence 9999999999999999876421000 0123344566778
Q ss_pred ccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 381 FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
++.+|+|+|++++||+++ .+.++||+.|.+|||+...
T Consensus 289 r~~~peevA~~v~fL~s~-~a~~itG~~i~vdGG~~~~ 325 (329)
T 3lt0_A 289 QKLLSTDIGSVASFLLSR-ESRAITGQTIYVDNGLNIM 325 (329)
T ss_dssp SCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGC
T ss_pred CcCCHHHHHHHHHHHhCc-hhccccCcEEEEcCCeeEE
Confidence 899999999999999965 5789999999999999874
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=304.09 Aligned_cols=234 Identities=24% Similarity=0.254 Sum_probs=197.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||++|||+++|++|+++|++|++++|+.++. .+++ + +..+++|+++ ++++++++++.+.+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~-----~--~~~~~~D~~~-~~~~~~~~~~~~~~g~ 70 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL-----G--AVPLPTDLEK-DDPKGLVKRALEALGG 70 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH-----T--CEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh-----C--cEEEecCCch-HHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999998762 2333 1 5678999999 9999999999999999
Q ss_pred eeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||+... ..+.+.++|++.+++|+.+++++++.++|.|+ +++.|+||++||.++
T Consensus 71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~~g~iv~isS~~~ 132 (239)
T 2ekp_A 71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMA------------------EAGWGRVLFIGSVTT 132 (239)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCGGG
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEECchhh
Confidence 9999999998643 35678999999999999999999999999998 345689999999988
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+.. .++..+|++||+++++|+++++.|++++||+||+|+||++.|++...... .+.....+....|.
T Consensus 133 ~~~~~----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~p~ 201 (239)
T 2ekp_A 133 FTAGG----------PVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQ-NPELYEPITARIPM 201 (239)
T ss_dssp TSCCT----------TSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT-CHHHHHHHHTTCTT
T ss_pred ccCCC----------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcccc-CHHHHHHHHhcCCC
Confidence 76431 14578999999999999999999999999999999999999998654211 12222333344566
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+++.+|+|+|++++||+++ ...+++|+.+.+|||..
T Consensus 202 ~~~~~~~dvA~~~~~l~s~-~~~~~tG~~~~vdgG~~ 237 (239)
T 2ekp_A 202 GRWARPEEIARVAAVLCGD-EAEYLTGQAVAVDGGFL 237 (239)
T ss_dssp SSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHcCc-hhcCCCCCEEEECCCcc
Confidence 7789999999999999965 46789999999999965
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=301.21 Aligned_cols=243 Identities=26% Similarity=0.312 Sum_probs=205.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++++|++|+++++++++++.++++
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 37899999999999999999999999999999999988887777662221 23688899999999999999999999999
Q ss_pred CeeEEEEccccCCC-----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 221 KINVLINNAGVSGC-----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 221 ~iD~lI~nAG~~~~-----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||||||.... ..+.+.+++++.+++|+.+++++++.++|.|. +++.++||++|
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~------------------~~~~~~iv~is 141 (250)
T 2cfc_A 80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHML------------------LQGAGVIVNIA 141 (250)
T ss_dssp CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCCEEEEEC
Confidence 99999999998643 23567899999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++...|++||++++++++.++.|++++||+||+|+||++.|++.+.... .+.....+..
T Consensus 142 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~ 208 (250)
T 2cfc_A 142 SVASLVAF------------PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD-QPELRDQVLA 208 (250)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT-SHHHHHHHHT
T ss_pred ChhhccCC------------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC-CHHHHHHHHh
Confidence 99887654 5678999999999999999999999999999999999999998654111 1222233334
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+.+++.+|+|+|++++++++++ ..+++|+.|.+|||..
T Consensus 209 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~ 248 (250)
T 2cfc_A 209 RIPQKEIGTAAQVADAVMFLAGED-ATYVNGAALVMDGAYT 248 (250)
T ss_dssp TCTTCSCBCHHHHHHHHHHHHSTT-CTTCCSCEEEESTTGG
T ss_pred cCCCCCCcCHHHHHHHHHHHcCch-hhcccCCEEEECCcee
Confidence 455667889999999999999765 6789999999999975
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=298.05 Aligned_cols=231 Identities=23% Similarity=0.271 Sum_probs=199.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|+++++++++++.+++|
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999999988888764433 4788999999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+ ..+++|++||..
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-------------------~~~~ii~~sS~~ 140 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKR-------------------TGGLALVTTSDV 140 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HTCEEEEECCGG
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------cCCcEEEEecch
Confidence 999999999986543 56789999999999999999999999999952 347899999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. +...+|++||+|+++|+++++ +...||+||+|+||+++|++.+.......
T Consensus 141 ~~~~~------------~~~~~Y~~sKaa~~~~~~~l~--~~~~~i~v~~v~PG~v~T~~~~~~~~~~~----------- 195 (235)
T 3l77_A 141 SARLI------------PYGGGYVSTKWAARALVRTFQ--IENPDVRFFELRPGAVDTYFGGSKPGKPK----------- 195 (235)
T ss_dssp GSSCC------------TTCHHHHHHHHHHHHHHHHHH--HHCTTSEEEEEEECSBSSSTTTCCSCCCG-----------
T ss_pred hcccC------------CCcchHHHHHHHHHHHHHHHh--hcCCCeEEEEEeCCccccccccccCCccc-----------
Confidence 87654 567899999999999999994 44789999999999999999876542111
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+..+|+|+|++++||++++ ..+++|+.+..+++..+
T Consensus 196 ~~~~~~p~dva~~v~~l~~~~-~~~~~~~~~~~~~~~~~ 233 (235)
T 3l77_A 196 EKGYLKPDEIAEAVRCLLKLP-KDVRVEELMLRSVYQRP 233 (235)
T ss_dssp GGTCBCHHHHHHHHHHHHTSC-TTCCCCEEEECCTTSCC
T ss_pred ccCCCCHHHHHHHHHHHHcCC-CCCccceEEEeecccCC
Confidence 125679999999999999776 57899999999988754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=301.44 Aligned_cols=243 Identities=27% Similarity=0.312 Sum_probs=206.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++... .++.++.+|++|.++++++++++.+.
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998887776665332 36888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC-cEEEEEc
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-SRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~IV~vS 295 (429)
++++|+||||||..... .+.+.++|++.+++|+.|++++++.++|.|+ +.+. ++||++|
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~~~~~iv~is 141 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMK------------------NKGLGASIINMS 141 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TSSSCEEEEEEC
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------hcCCCCEEEEeC
Confidence 99999999999986433 5678899999999999999999999999997 4444 8999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
|.++..+. ++..+|++||++++++++.++.|+. +.||+|++|+||++.|++.+.... ......+
T Consensus 142 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~ 207 (251)
T 1zk4_A 142 SIEGFVGD------------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAMSQ 207 (251)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHHTS
T ss_pred CchhccCC------------CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc--hhhhHHH
Confidence 99887654 5678999999999999999999998 899999999999999998765421 1111112
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++.+|+|+|++++++++++ ..+++|+.+.++||...
T Consensus 208 ~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~~ 250 (251)
T 1zk4_A 208 RTKTPMGHIGEPNDIAYICVYLASNE-SKFATGSEFVVDGGYTA 250 (251)
T ss_dssp TTTCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred hhcCCCCCCcCHHHHHHHHHHHcCcc-cccccCcEEEECCCccC
Confidence 23345567889999999999999754 57899999999999753
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=301.21 Aligned_cols=244 Identities=24% Similarity=0.266 Sum_probs=205.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceE-EEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYV-LCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v-~~~~~Dls~~~sv~~~~~~i 215 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++ .++.+|++|.++++++++++
T Consensus 6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 6 VFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999988877766652 245 78899999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+ ++++|+||||||..... .+.+.+++++.+++|+.|++++++.++|.|+ +++.++||+
T Consensus 81 ~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~iv~ 141 (254)
T 2wsb_A 81 EA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMV------------------ARGAGAIVN 141 (254)
T ss_dssp HH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred Hh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCcEEEE
Confidence 88 89999999999986543 5568899999999999999999999999997 345789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+.+. .+..+|++||+++++++++++.|++++||+|++|+||++.|++.+.... .+.....+
T Consensus 142 isS~~~~~~~~~----------~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~ 210 (254)
T 2wsb_A 142 LGSMSGTIVNRP----------QFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE-RPELFETW 210 (254)
T ss_dssp ECCGGGTSCCSS----------SCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT-CHHHHHHH
T ss_pred EecchhccCCCC----------CcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc-ChHHHHHH
Confidence 999988765411 1237899999999999999999999999999999999999998654321 12222333
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
....+.+++.+|+|+|++++++++++ ..+++|+.+.++||..
T Consensus 211 ~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~ 252 (254)
T 2wsb_A 211 LDMTPMGRCGEPSEIAAAALFLASPA-ASYVTGAILAVDGGYT 252 (254)
T ss_dssp HHTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred HhcCCCCCCCCHHHHHHHHHHHhCcc-cccccCCEEEECCCEe
Confidence 34445567889999999999999654 5789999999999964
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=310.44 Aligned_cols=231 Identities=24% Similarity=0.207 Sum_probs=193.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAK-RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++|++|||||++|||+++|++|++ .|++|++++|+.+. ....+.++++|++|.++++++++.+.
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~------------~~~~~~~~~~Dv~~~~~v~~~~~~~~-- 67 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF------------SAENLKFIKADLTKQQDITNVLDIIK-- 67 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC------------CCTTEEEEECCTTCHHHHHHHHHHTT--
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc------------ccccceEEecCcCCHHHHHHHHHHHH--
Confidence 4689999999999999999999999 78999999987641 11256889999999999999996553
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ + .|+||++||
T Consensus 68 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~------------------~--~g~iv~~sS 127 (244)
T 4e4y_A 68 NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLK------------------V--GASIVFNGS 127 (244)
T ss_dssp TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEE------------------E--EEEEEEECC
T ss_pred hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhc------------------c--CcEEEEECC
Confidence 78999999999987543 6678999999999999999999999998875 2 289999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--------chh
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--------DSW 368 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--------~~~ 368 (429)
.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|++.+..... .++
T Consensus 128 ~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 195 (244)
T 4e4y_A 128 DQCFIAK------------PNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDE 195 (244)
T ss_dssp GGGTCCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHccCC------------CCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHH
Confidence 9987764 66889999999999999999999999999999999999999987543210 011
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.........|.+++.+|+|+|++++||++++ ..++||+.|.+|||+..
T Consensus 196 ~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~-~~~itG~~i~vdGG~~~ 243 (244)
T 4e4y_A 196 AQKQEEKEFPLNRIAQPQEIAELVIFLLSDK-SKFMTGGLIPIDGGYTA 243 (244)
T ss_dssp HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred HHHHHhhcCCCCCCcCHHHHHHHHHHHhcCc-cccccCCeEeECCCccC
Confidence 2233444566778899999999999999764 67999999999999764
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=308.42 Aligned_cols=242 Identities=22% Similarity=0.261 Sum_probs=193.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+|+ |++|||||++|||+++|++|+++|++|++++|+.+++++..+++... .++.++++|++|.++++++++++.
T Consensus 17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 17 GSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp ----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44566 99999999999999999999999999999999999888877776442 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc-EEE
Q psy12836 217 KENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS-RII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-~IV 292 (429)
+.+|++|+||||||+... ..+.+.++|++++++|+.|++++++.++|.|+ +++.| +||
T Consensus 93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~------------------~~~~g~~IV 154 (272)
T 2nwq_A 93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLI------------------AHGAGASIV 154 (272)
T ss_dssp GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHCTTCEEE
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEE
Confidence 999999999999998642 35678899999999999999999999999997 33457 999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++...........
T Consensus 155 ~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~--- 219 (272)
T 2nwq_A 155 NLGSVAGKWPY------------PGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQAR--- 219 (272)
T ss_dssp EECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------
T ss_pred EeCCchhccCC------------CCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHH---
Confidence 99999887654 567899999999999999999999999999999999999999865321100100
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...........+|+|+|++++||++++ .+++|+.+.++++...
T Consensus 220 ~~~~~~~~~~~~pedvA~~v~~l~s~~--~~~~g~~i~v~~~~~~ 262 (272)
T 2nwq_A 220 YDKTYAGAHPIQPEDIAETIFWIMNQP--AHLNINSLEIMPVSQS 262 (272)
T ss_dssp ------CCCCBCHHHHHHHHHHHHTSC--TTEEEEEEEEEETTEE
T ss_pred HHHhhccCCCCCHHHHHHHHHHHhCCC--ccCccceEEEeeccCc
Confidence 001111123479999999999999764 5789999999888544
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=301.75 Aligned_cols=242 Identities=24% Similarity=0.354 Sum_probs=190.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.... .++.++++|++|.++++++++++.+
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMD 79 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999 677777777776665432 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|+ +++.++||++|
T Consensus 80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 141 (247)
T 2hq1_A 80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIML------------------KQKSGKIINIT 141 (247)
T ss_dssp HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 999999999999986432 4567788999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||++++.+++.++.|+++.||+||+|+||++.|++..... +.....+..
T Consensus 142 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~ 206 (247)
T 2hq1_A 142 SIAGIIGN------------AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLP---DKVKEMYLN 206 (247)
T ss_dssp C---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHT
T ss_pred ChhhccCC------------CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcc---hHHHHHHHh
Confidence 98877664 567899999999999999999999999999999999999999876542 222233333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+..++.+|+|+|++++++++++ ..+++|+.|+++||..
T Consensus 207 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~ 246 (247)
T 2hq1_A 207 NIPLKRFGTPEEVANVVGFLASDD-SNYITGQVINIDGGLV 246 (247)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC-
T ss_pred hCCCCCCCCHHHHHHHHHHHcCcc-cccccCcEEEeCCCcc
Confidence 445567889999999999999654 5788999999999864
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=302.22 Aligned_cols=254 Identities=24% Similarity=0.248 Sum_probs=209.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|++|||||++|||+++|++|+++|++|++++|+.++..+..+++....+ .++.++++|++|.++++++++++.
T Consensus 9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcC-CeeEEEEeeCCCHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999987766665666544332 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|.+ +...++||++
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----------------~~~~~~iv~~ 150 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQ-----------------KQQKGSIVVT 150 (265)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEE
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHh-----------------cCCCceEEEe
Confidence 9999999999999986543 45688999999999999999999999999873 2235899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+.... .....+..+|++||++++++++.++.|++++||+||+|+||++.|++.+... +.....+.
T Consensus 151 sS~~~~~~~~~~-----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~ 222 (265)
T 1h5q_A 151 SSMSSQIINQSS-----LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD---KKIRDHQA 222 (265)
T ss_dssp CCGGGTSCCEEE-----TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHH
T ss_pred CCchhhcccccc-----ccccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccc---hhHHHHHH
Confidence 998876653210 0111346789999999999999999999999999999999999999876542 22223333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+++.+|+|+|++++++++++ ..+++|+.+.+|||...
T Consensus 223 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~~ 264 (265)
T 1h5q_A 223 SNIPLNRFAQPEEMTGQAILLLSDH-ATYMTGGEYFIDGGQLI 264 (265)
T ss_dssp HTCTTSSCBCGGGGHHHHHHHHSGG-GTTCCSCEEEECTTGGG
T ss_pred hcCcccCCCCHHHHHHHHHhhccCc-hhcCcCcEEEecCCEeC
Confidence 3455667889999999999999764 67899999999999753
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=299.39 Aligned_cols=246 Identities=23% Similarity=0.320 Sum_probs=210.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++|+++++++++++.
T Consensus 6 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 83 (255)
T 1fmc_A 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999988887777775433 367889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++++++|+||||||..... .+.+.+++++.+++|+.+++++++.++|.|+ +.+.++||++|
T Consensus 84 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 145 (255)
T 1fmc_A 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEME------------------KNGGGVILTIT 145 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 9999999999999986532 3568899999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||++++.+++.++.|+++.||++|+|+||++.|++.+... .+.....+..
T Consensus 146 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~ 211 (255)
T 1fmc_A 146 SMAAENKN------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQ 211 (255)
T ss_dssp CGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHH
T ss_pred chhhcCCC------------CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHHHHHHHh
Confidence 98876653 567899999999999999999999999999999999999999876532 1223333444
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+..++.+|+|+|++++++++++ ..+++|+.|.++||...
T Consensus 212 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~ 252 (255)
T 1fmc_A 212 HTPIRRLGQPQDIANAALFLCSPA-ASWVSGQILTVSGGGVQ 252 (255)
T ss_dssp TCSSCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSCC
T ss_pred cCCcccCCCHHHHHHHHHHHhCCc-cccCCCcEEEECCceec
Confidence 455567889999999999999654 56789999999998654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=300.12 Aligned_cols=250 Identities=21% Similarity=0.270 Sum_probs=208.8
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
...+++||++|||||++|||+++|++|+++|++|++++|+.++.++..+++.. ..++.++++|++|.++++++++++
T Consensus 10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 86 (278)
T 2bgk_A 10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTT 86 (278)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999998877766665522 126888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 216 KKENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
.++++++|+||||||.... ..+.+.+++++.+++|+.+++++++.++|.|. +++.|+|
T Consensus 87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~i 148 (278)
T 2bgk_A 87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMI------------------PAKKGSI 148 (278)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHG------------------GGTCEEE
T ss_pred HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHh------------------hcCCCeE
Confidence 9999999999999998642 25568899999999999999999999999997 4467899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCC-CcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYD-PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~-~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
|++||.++..+. + +..+|++||++++++++.++.|++++||+|++|+||++.|++........+...
T Consensus 149 v~isS~~~~~~~------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 216 (278)
T 2bgk_A 149 VFTASISSFTAG------------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRV 216 (278)
T ss_dssp EEECCGGGTCCC------------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHH
T ss_pred EEEeeccccCCC------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHH
Confidence 999999887654 3 577899999999999999999999999999999999999998765432222222
Q ss_pred HHHHhH--HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 371 TVVLKP--LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 371 ~~~~~~--~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
..+... .+.+++.+|+|+|++++++++++ ..+++|++|.++||...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~~~ 266 (278)
T 2bgk_A 217 EELAHQAANLKGTLLRAEDVADAVAYLAGDE-SKYVSGLNLVIDGGYTRTN 266 (278)
T ss_dssp HHHHHHTCSSCSCCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGCC
T ss_pred HHhhhcccccccccCCHHHHHHHHHHHcCcc-cccCCCCEEEECCcccccC
Confidence 222222 23456889999999999999654 5789999999999976643
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=301.12 Aligned_cols=234 Identities=23% Similarity=0.305 Sum_probs=189.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|.++++++++++.+++|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 75 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWCNI 75 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999999988887766652 257889999999999999999999999999
Q ss_pred eEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 223 NVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 223 D~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
|+||||||+.. +..+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++||.++
T Consensus 76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~------------------~~~~g~iv~isS~~~ 137 (248)
T 3asu_A 76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMV------------------ERNHGHIINIGSTAG 137 (248)
T ss_dssp CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEECCGGG
T ss_pred CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCceEEEEccchh
Confidence 99999999863 235678999999999999999999999999997 345699999999988
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc-CCcccCCCCCchhHHHHHHhHHh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN-TDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~-T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
..+. ++..+|++||+++++|+++++.|++++||+||+|+||+|+ |++............. ....
T Consensus 138 ~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~---~~~~ 202 (248)
T 3asu_A 138 SWPY------------AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAE---KTYQ 202 (248)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------
T ss_pred ccCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHH---HHHh
Confidence 7654 5678999999999999999999999999999999999999 9986432100010001 1111
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.....+|+|+|++++|+++++ .+++|+.+.++.+..
T Consensus 203 ~~~~~~p~dvA~~v~~l~s~~--~~~~g~~i~v~~~~~ 238 (248)
T 3asu_A 203 NTVALTPEDVSEAVWWVSTLP--AHVNINTLEMMPVTQ 238 (248)
T ss_dssp --CCBCHHHHHHHHHHHHHSC--TTCCCCEEEECCTTC
T ss_pred ccCCCCHHHHHHHHHHHhcCC--ccceeeEEEEccccc
Confidence 123469999999999999864 578999998876643
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=297.17 Aligned_cols=243 Identities=28% Similarity=0.345 Sum_probs=208.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++.+|++|.++++++++++.+
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-VKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcC-CceEEEEccCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999888877776654222 3688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.++++|+||||||..... .+.+.+++++.+++|+.|++++++.++|.|. +++.++||++|
T Consensus 82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~iv~~s 143 (248)
T 2pnf_A 82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMI------------------KQRWGRIVNIS 143 (248)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHH------------------HHTCEEEEEEC
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH------------------hcCCcEEEEEc
Confidence 999999999999986533 4568899999999999999999999999997 34568999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++...|++||++++++++.++.|+++.||++|+|+||++.|++..... +.....+..
T Consensus 144 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~ 208 (248)
T 2pnf_A 144 SVVGFTGN------------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS---EEIKQKYKE 208 (248)
T ss_dssp CHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHHH
T ss_pred cHHhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc---HHHHHHHHh
Confidence 98877664 567899999999999999999999999999999999999999876532 222222333
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+..++.+|+|+|++++++++++ ..+++|+.+.++||.
T Consensus 209 ~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 209 QIPLGRFGSPEEVANVVLFLCSEL-ASYITGEVIHVNGGM 247 (248)
T ss_dssp TCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred cCCCCCccCHHHHHHHHHHHhCch-hhcCCCcEEEeCCCc
Confidence 345567889999999999999654 568899999999985
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=302.92 Aligned_cols=247 Identities=21% Similarity=0.284 Sum_probs=201.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc-----CCceEEEEEeeCCCHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-----KNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +..++.++++|++|.+++++++
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999988877766554322 1135788899999999999999
Q ss_pred HHHHHhCCCe-eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-C
Q psy12836 213 EEVKKENKKI-NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-P 288 (429)
Q Consensus 213 ~~i~~~~g~i-D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 288 (429)
+++.+.++++ |+||||||..... .+.+.+++++.+++|+.|++++++.++|.|.+ ++ .
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------------------~~~~ 144 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVS------------------NGCR 144 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HTCC
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHh------------------cCCC
Confidence 9999999999 9999999987543 45688999999999999999999999999973 23 6
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+. ++...|++||++++++++.++.|++++||+|++|+||++.|++..... +.
T Consensus 145 g~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~ 209 (264)
T 2pd6_A 145 GSIINISSIVGKVGN------------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP---QK 209 (264)
T ss_dssp EEEEEECCTHHHHCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------
T ss_pred ceEEEECChhhccCC------------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC---HH
Confidence 899999999887664 567899999999999999999999999999999999999999876432 11
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....+....+..++.+|+|+|++++++++++ ..+++|+.+.++||....
T Consensus 210 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~~ 258 (264)
T 2pd6_A 210 VVDKITEMIPMGHLGDPEDVADVVAFLASED-SGYITGTSVEVTGGLFMA 258 (264)
T ss_dssp ---CTGGGCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC---
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCc-ccCCCCCEEEECCCceec
Confidence 2222223345567789999999999999654 578999999999998654
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=304.57 Aligned_cols=246 Identities=21% Similarity=0.209 Sum_probs=207.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||++|||||++|||+++|++|+++|++|++++|+.++.++..+++.... .++.++++|++|.++++++++++.
T Consensus 29 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 106 (279)
T 3ctm_A 29 LFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQE 106 (279)
T ss_dssp GGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999887776666654432 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCC-C--C-CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 217 KENKKINVLINNAGVSGC-R--K-MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~-~--~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.++++|+||||||+... . . +.+.+++++.+++|+.|++++++.+++.|+ +++.++||
T Consensus 107 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~~~iv 168 (279)
T 3ctm_A 107 KDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFK------------------KNGKGSLI 168 (279)
T ss_dssp HHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEE
T ss_pred HHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCeEE
Confidence 999999999999998654 2 3 567889999999999999999999999997 34568999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+.. .++..+|++||+++++++++++.|++++| +||+|+||+++|++..... +.....
T Consensus 169 ~isS~~~~~~~~----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~---~~~~~~ 234 (279)
T 3ctm_A 169 ITSSISGKIVNI----------PQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS---KDMKAK 234 (279)
T ss_dssp EECCCTTSCC-------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC---HHHHHH
T ss_pred EECchHhccCCC----------CCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC---hHHHHH
Confidence 999998765510 15678999999999999999999999999 9999999999999875432 222233
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+....+.+++.+|+|+|++++++++++ ..+++|+.+.+|||...
T Consensus 235 ~~~~~p~~~~~~~~dvA~~~~~l~s~~-~~~~tG~~i~vdgG~~~ 278 (279)
T 3ctm_A 235 WWQLTPLGREGLTQELVGGYLYLASNA-STFTTGSDVVIDGGYTC 278 (279)
T ss_dssp HHHHSTTCSCBCGGGTHHHHHHHHSGG-GTTCCSCEEEESTTCCC
T ss_pred HHHhCCccCCcCHHHHHHHHHHHhCcc-ccCccCCEEEECCCeec
Confidence 334556677899999999999999654 67899999999999754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=303.18 Aligned_cols=251 Identities=16% Similarity=0.227 Sum_probs=209.5
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|.++++++++++
T Consensus 20 ~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 98 (302)
T 1w6u_A 20 PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSEL 98 (302)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999988888777765422 36889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||..... ...+.+++++.+++|+.|++++++.+++.|.+ +.+.++||+
T Consensus 99 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-----------------~~~~~~iv~ 161 (302)
T 1w6u_A 99 IKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK-----------------AQKGAAFLS 161 (302)
T ss_dssp HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------hcCCCEEEE
Confidence 99999999999999976432 46788999999999999999999999999863 335689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~~~ 372 (429)
+||.++..+. ++..+|++||++++++++.++.|++++||+||+|+||++.|+ +....... ......
T Consensus 162 isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~ 228 (302)
T 1w6u_A 162 ITTIYAETGS------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPT-GTFEKE 228 (302)
T ss_dssp ECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTT-SHHHHH
T ss_pred EcccccccCC------------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccc-hhhHHH
Confidence 9999887664 567899999999999999999999999999999999999998 44433211 111123
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+....+.+++.+|+|+|++++++++++ ..+++|+.|.++||...+
T Consensus 229 ~~~~~p~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~~ 273 (302)
T 1w6u_A 229 MIGRIPCGRLGTVEELANLAAFLCSDY-ASWINGAVIKFDGGEEVL 273 (302)
T ss_dssp HHTTCTTSSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTHHHH
T ss_pred HHhcCCcCCCCCHHHHHHHHHHHcCCc-ccccCCCEEEECCCeeec
Confidence 334456667889999999999999654 678999999999997654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=305.61 Aligned_cols=256 Identities=21% Similarity=0.299 Sum_probs=210.4
Q ss_pred CcccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc---CCceEEEEEeeCCCHHH
Q psy12836 131 GAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES---KNKYVLCRKCDLASQES 207 (429)
Q Consensus 131 ~~~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dls~~~s 207 (429)
+.+.....+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .+.++.++++|++|.++
T Consensus 7 ~~~~~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~ 86 (303)
T 1yxm_A 7 GRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEE 86 (303)
T ss_dssp CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHH
T ss_pred cCCccCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHH
Confidence 344445667999999999999999999999999999999999999998888888776521 23478899999999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
++++++++.+.+|++|+||||||..... .+.+.+++++.+++|+.|+++++++++|.+.+
T Consensus 87 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------------------ 148 (303)
T 1yxm_A 87 VNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMK------------------ 148 (303)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHH------------------
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------
Confidence 9999999999999999999999975432 55688999999999999999999999996542
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc-cCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL-RHSSY 364 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~-~~~~~ 364 (429)
...|+||++||.+ ..+. ++...|++||+++.++++.++.|++++||+||+|+||++.|++. .....
T Consensus 149 ~~~~~iv~isS~~-~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~ 215 (303)
T 1yxm_A 149 EHGGSIVNIIVPT-KAGF------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS 215 (303)
T ss_dssp HHCEEEEEECCCC-TTCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG
T ss_pred hcCCeEEEEEeec-ccCC------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccc
Confidence 2358999999987 4443 56789999999999999999999999999999999999999953 22211
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.....+....+.+++.+|+|+|++++++++++ ..+++|++|.++||....
T Consensus 216 ~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~-~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 216 WGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPA-ASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp GGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGC
T ss_pred cchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcc-cccCCCcEEEECCCeecc
Confidence 01112222333455567889999999999999654 678999999999997654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=302.40 Aligned_cols=233 Identities=14% Similarity=0.130 Sum_probs=194.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||++|||+++|++|+++|++|++++|+.+++++..+ +..... ++..+ |.++++++++++.++++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~--~~~~~-----d~~~v~~~~~~~~~~~g~i 73 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYP--QLKPM-----SEQEPAELIEAVTSAYGQV 73 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCT--TSEEC-----CCCSHHHHHHHHHHHHSCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCC--cEEEE-----CHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999999999888776655 544332 23222 6677888999999999999
Q ss_pred eEEEEccccC-CC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 223 NVLINNAGVS-GC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 223 D~lI~nAG~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
|+||||||+. .. ..+.+.++|++++++|+.|+++++++++|.|+ +++.|+||++||.++
T Consensus 74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g~iv~isS~~~ 135 (254)
T 1zmt_A 74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMK------------------KRKSGHIIFITSATP 135 (254)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEECCSTT
T ss_pred CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCcEEEEECCccc
Confidence 9999999986 32 25678999999999999999999999999997 345689999999988
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc---------cCCcccCCCCCchhHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV---------NTDILRHSSYYDSWLS 370 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v---------~T~~~~~~~~~~~~~~ 370 (429)
..+. ++..+|++||+|+++|+++++.|++++||+||+|+||+| +|++.+.. +...
T Consensus 136 ~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~----~~~~ 199 (254)
T 1zmt_A 136 FGPW------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN----PEHV 199 (254)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC----HHHH
T ss_pred ccCC------------CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccC----hHHH
Confidence 7664 567899999999999999999999999999999999999 77765432 1222
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+....+.+++.+|+|+|++++||++++ ..+++|++|.+|||....
T Consensus 200 ~~~~~~~p~~~~~~p~dvA~~v~~l~s~~-~~~~tG~~~~vdgG~~~~ 246 (254)
T 1zmt_A 200 AHVKKVTALQRLGTQKELGELVAFLASGS-CDYLTGQVFWLAGGFPMI 246 (254)
T ss_dssp HHHHHHSSSSSCBCHHHHHHHHHHHHTTS-CGGGTTCEEEESTTCCCC
T ss_pred HHHhccCCCCCCcCHHHHHHHHHHHhCcc-cCCccCCEEEECCCchhh
Confidence 23334456677899999999999999764 678999999999997654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=297.21 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=182.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|+++.++++++++++.+. .
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~---~ 73 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSI---P 73 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSC---C
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhc---C
Confidence 78999999999999999999999999999999999888776655 236778899999999999999887544 3
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|+||||||..... .+.+.++|++++++|+.|++++++.++|.|. ++ +++||++||.++.
T Consensus 74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~-~~~iv~isS~~~~ 134 (230)
T 3guy_A 74 STVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYK------------------DQ-PVNVVMIMSTAAQ 134 (230)
T ss_dssp SEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------TS-CCEEEEECCGGGT
T ss_pred CEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hC-CCeEEEEeecccC
Confidence 9999999986543 5678999999999999999999999999996 33 3599999999987
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++..+|++||+|+++|+++++.|++++||+||+|+||+++|++.+.... ..+..
T Consensus 135 ~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-----------~~~~~ 191 (230)
T 3guy_A 135 QPK------------AQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGK-----------SLDTS 191 (230)
T ss_dssp SCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------
T ss_pred CCC------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcCC-----------CCCcc
Confidence 764 6688999999999999999999999999999999999999998765431 22346
Q ss_pred ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 381 FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
++.+|+|+|++++++++++...+++|+++..+.....
T Consensus 192 ~~~~~~dvA~~i~~l~~~~~~~~itg~~~~~~~~~~~ 228 (230)
T 3guy_A 192 SFMSAEDAALMIHGALANIGNGYVSDITVNREGHHHH 228 (230)
T ss_dssp -CCCHHHHHHHHHHHCCEETTEEEEEEEEEC------
T ss_pred cCCCHHHHHHHHHHHHhCcCCCCccceeecCCCCCCC
Confidence 7889999999999999888889999999988876543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=299.09 Aligned_cols=243 Identities=28% Similarity=0.334 Sum_probs=199.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.....+.++.++++|++|+++++++++++.++
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999888877777755433346888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|++|+||||||... .++|++.+++|+.+++.+++.++|.|.+.. ....|+||++||.+
T Consensus 84 ~g~id~lv~~Ag~~~------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---------------~~~~g~iv~isS~~ 142 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN------EKNWEKTLQINLVSVISGTYLGLDYMSKQN---------------GGEGGIIINMSSLA 142 (267)
T ss_dssp HSCCCEEEECCCCCC------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGG---------------TCCCEEEEEECCGG
T ss_pred cCCCCEEEECCCCCC------hhhHHHHHhHHHHHHHHHHHHHHHHHHhcc---------------CCCCCEEEEeCCcc
Confidence 999999999999753 467899999999999999999999996321 11368999999998
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHH--HHHhcCCCeEEEEEeCCCccCCcccCCCCCch-----hHHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTREL--AKRLEGTGITVNAVHPGIVNTDILRHSSYYDS-----WLST 371 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~l--a~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~-----~~~~ 371 (429)
+..+. ++..+|++||++++++++++ +.|+++.||+||+|+||++.|++......... ....
T Consensus 143 ~~~~~------------~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 210 (267)
T 2gdz_A 143 GLMPV------------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKD 210 (267)
T ss_dssp GTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHH
T ss_pred ccCCC------------CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHH
Confidence 87654 56789999999999999985 68999999999999999999998654321000 0111
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+..+++...+.+|+|+|++++++++++ .++|+.|.++++...
T Consensus 211 ~~~~~~~~~~~~~~~dvA~~v~~l~s~~---~~~G~~~~v~gg~~~ 253 (267)
T 2gdz_A 211 HIKDMIKYYGILDPPLIANGLITLIEDD---ALNGAIMKITTSKGI 253 (267)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHHHHHHCT---TCSSCEEEEETTTEE
T ss_pred HHHHHhccccCCCHHHHHHHHHHHhcCc---CCCCcEEEecCCCcc
Confidence 1222344445679999999999999765 489999999987654
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=323.16 Aligned_cols=240 Identities=23% Similarity=0.297 Sum_probs=197.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH--HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK--CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~--~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...++||++|||||++|||+++|+.|+++|++|++++|+... +++..+++ .+.+++||++|.+++++++++
T Consensus 208 ~~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~-------~~~~~~~Dvtd~~~v~~~~~~ 280 (454)
T 3u0b_A 208 DKPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKV-------GGTALTLDVTADDAVDKITAH 280 (454)
T ss_dssp TSTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHH-------TCEEEECCTTSTTHHHHHHHH
T ss_pred ccCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999997532 22222222 245789999999999999999
Q ss_pred HHHhCCC-eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 215 VKKENKK-INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 215 i~~~~g~-iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+.+++++ ||+||||||+.... .+.+.++|++++++|+.|++++++.+.+.|. .++.++|
T Consensus 281 ~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~------------------~~~~g~i 342 (454)
T 3u0b_A 281 VTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGT------------------IGEGGRV 342 (454)
T ss_dssp HHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTS------------------SCTTCEE
T ss_pred HHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hcCCCEE
Confidence 9999986 99999999987544 5679999999999999999999999999886 5577999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++...|++||+++++|+++++.|++++||+||+|+||+|+|+|.+.........
T Consensus 343 V~iSS~a~~~g~------------~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~-- 408 (454)
T 3u0b_A 343 IGLSSMAGIAGN------------RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREV-- 408 (454)
T ss_dssp EEECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHH--
T ss_pred EEEeChHhCCCC------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHH--
Confidence 999999998875 678899999999999999999999999999999999999999987654221111
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.....+..+..+|+|+|++++||+++ ...++||++|.+|||..+
T Consensus 409 -~~~~~~l~r~g~pedvA~~v~fL~s~-~a~~itG~~i~vdGG~~l 452 (454)
T 3u0b_A 409 -GRRLNSLFQGGQPVDVAELIAYFASP-ASNAVTGNTIRVCGQAML 452 (454)
T ss_dssp -HHHSBTTSSCBCHHHHHHHHHHHHCG-GGTTCCSCEEEESSSBSC
T ss_pred -HHhhccccCCCCHHHHHHHHHHHhCC-ccCCCCCcEEEECCcccc
Confidence 22233456778999999999999965 578999999999999764
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=296.00 Aligned_cols=217 Identities=19% Similarity=0.200 Sum_probs=185.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+ +|++|+++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~-- 57 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETI-- 57 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHH--
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHh--
Confidence 4578999999999999999999999999999999999764 7999999999998865
Q ss_pred hCCCeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||||||... +..+.+.++|++.+++|+.++++++++++|+|+ + .|+||++
T Consensus 58 --g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~--~g~iv~~ 115 (223)
T 3uce_A 58 --GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLK------------------Q--GGSITLT 115 (223)
T ss_dssp --CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEE------------------E--EEEEEEE
T ss_pred --CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhcc------------------C--CeEEEEe
Confidence 89999999999863 236678999999999999999999999998875 2 4899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-hhHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD-SWLSTVV 373 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~-~~~~~~~ 373 (429)
||.++..+. ++..+|++||+|+++|+++|+.|+++ |+||+|+||+++|++.+...... ....+..
T Consensus 116 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~--i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~ 181 (223)
T 3uce_A 116 SGMLSRKVV------------ANTYVKAAINAAIEATTKVLAKELAP--IRVNAISPGLTKTEAYKGMNADDRDAMYQRT 181 (223)
T ss_dssp CCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTT--SEEEEEEECSBCSGGGTTSCHHHHHHHHHHH
T ss_pred cchhhccCC------------CCchHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcchhhhhcchhhHHHHHHHH
Confidence 999887764 66889999999999999999999987 99999999999999987654211 1122334
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+++.+|+|+|++++|++++ .+++|+.|.+|||...
T Consensus 182 ~~~~~~~~~~~~~dvA~~~~~l~~~---~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 182 QSHLPVGKVGEASDIAMAYLFAIQN---SYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHSTTCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTGGG
T ss_pred hhcCCCCCccCHHHHHHHHHHHccC---CCCCCcEEEecCCeec
Confidence 4556778889999999999999963 5899999999999765
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=294.27 Aligned_cols=240 Identities=24% Similarity=0.311 Sum_probs=204.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEE-EEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLC-RKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~-~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+|+++||||++|||+++|++|+++|++|+++ +|+.+++++..+++..... ++.. +.+|++|.++++++++++.+.+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGS--PLVAVLGANLLEAEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTC--SCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999998 8998888877777654332 4455 8999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|+||||||..... .+.+.+++++.+++|+.|++++++.++|.|+ +.+.++||++||.
T Consensus 79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~------------------~~~~~~iv~~sS~ 140 (245)
T 2ph3_A 79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMM------------------KARFGRIVNITSV 140 (245)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHH------------------hcCCCEEEEEeCh
Confidence 9999999999986533 5568899999999999999999999999997 3356899999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
++..+. ++..+|++||++++++++.++.|+++.||++|+|+||++.|++.+... +.....+....
T Consensus 141 ~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~ 205 (245)
T 2ph3_A 141 VGILGN------------PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLP---QEVKEAYLKQI 205 (245)
T ss_dssp HHHHCC------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHHTC
T ss_pred hhccCC------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcC---HHHHHHHHhcC
Confidence 887764 567899999999999999999999999999999999999999876532 22223333344
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+..++.+|+|+|++++++++++ ..+++|+++.++||..+
T Consensus 206 ~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~ 244 (245)
T 2ph3_A 206 PAGRFGRPEEVAEAVAFLVSEK-AGYITGQTLCVDGGLTP 244 (245)
T ss_dssp TTCSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTCSC
T ss_pred CCCCCcCHHHHHHHHHHHhCcc-cccccCCEEEECCCCCC
Confidence 5567789999999999999764 56889999999998654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=297.44 Aligned_cols=247 Identities=21% Similarity=0.234 Sum_probs=206.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.... .++.++.+|++|.++++++++++.+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999 788877777765432 4788999999999999999999999
Q ss_pred hCCCeeEEEEcccc-CCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGV-SGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~-~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++++|+||||||. ... ..+.+.++++..+++|+.+++++++.++|.|.+.... ....++||++
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~iv~~ 148 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKA-------------SGQTSAVIST 148 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------------HTSCEEEEEE
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccC-------------CCCCcEEEEe
Confidence 99999999999997 332 2456889999999999999999999999999742100 0123899999
Q ss_pred cCccccc-CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHKR-GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~-~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
||..+.. +. ++..+|++||++++++++.++.|++++||+||+|+||++.|++..... +.....+
T Consensus 149 sS~~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~ 213 (258)
T 3afn_B 149 GSIAGHTGGG------------PGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKT---QDVRDRI 213 (258)
T ss_dssp CCTHHHHCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCC---HHHHHHH
T ss_pred cchhhccCCC------------CCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccC---HHHHHHH
Confidence 9998866 43 567899999999999999999999999999999999999999876532 2232333
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcc-cCCceEEecCcccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLE-NVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~-~vtG~~i~~~gg~~ 416 (429)
....+.+++.+|+|+|++++++++++ .. +++|+.|.++||..
T Consensus 214 ~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~~G~~~~v~gg~~ 256 (258)
T 3afn_B 214 SNGIPMGRFGTAEEMAPAFLFFASHL-ASGYITGQVLDINGGQY 256 (258)
T ss_dssp HTTCTTCSCBCGGGTHHHHHHHHCHH-HHTTCCSEEEEESTTSS
T ss_pred hccCCCCcCCCHHHHHHHHHHHhCcc-hhccccCCEEeECCCcc
Confidence 34455567889999999999999654 44 88999999999864
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=303.70 Aligned_cols=233 Identities=20% Similarity=0.208 Sum_probs=193.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++++|++|.++++++++++.
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAF 103 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999888886543 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+||||||+.... .+.+.+++++++++|+.|++++++.++|.|.+ ....|+||++
T Consensus 104 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----------------~~~~g~iv~i 166 (301)
T 3tjr_A 104 RLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLE-----------------QGTGGHIAFT 166 (301)
T ss_dssp HHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HCSCEEEEEE
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----------------cCCCcEEEEe
Confidence 9999999999999987543 56789999999999999999999999999983 2236899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh------
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW------ 368 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~------ 368 (429)
||.++..+. ++..+|++||+|+++|+++|+.|+++.||+||+|+||+|+|++..........
T Consensus 167 sS~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 234 (301)
T 3tjr_A 167 ASFAGLVPN------------AGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSA 234 (301)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC--------
T ss_pred CchhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhcccc
Confidence 999988765 67889999999999999999999999999999999999999987542100000
Q ss_pred -HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 369 -LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 369 -~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
....+..........+|+|+|+.++.++..++
T Consensus 235 ~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 235 TPEGAFGPLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp --------------CCCHHHHHHHHHHHHHHTC
T ss_pred ChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 00001011112346799999999999997654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=291.10 Aligned_cols=238 Identities=23% Similarity=0.256 Sum_probs=197.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .+.++++|++|.++++++++
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~---- 72 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERALG---- 72 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHT----
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC------CCCEEEEeCCCHHHHHHHHH----
Confidence 46889999999999999999999999999999999999887776555431 23456999999999988876
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~v 294 (429)
.++++|+||||||..... .+.+.+++++.+++|+.+++++++.+.+.|.+ ++ .|+||++
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~------------------~~~~~~iv~~ 134 (244)
T 3d3w_A 73 SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIA------------------RGVPGAIVNV 134 (244)
T ss_dssp TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HTCCEEEEEE
T ss_pred HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------CCCCcEEEEe
Confidence 568999999999986532 55688999999999999999999999999973 33 6899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||++++++++.++.|++++||+||+|+||++.|++...... .+.....+.
T Consensus 135 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~ 201 (244)
T 3d3w_A 135 SSQCSQRAV------------TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTML 201 (244)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC-STTHHHHHH
T ss_pred CchhhccCC------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc-ChHHHHHHH
Confidence 999887653 5678999999999999999999999999999999999999998653211 111222333
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+++.+|+|+|++++++++++ ..+++|+.|.++||...
T Consensus 202 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~~ 243 (244)
T 3d3w_A 202 NRIPLGKFAEVEHVVNAILFLLSDR-SGMTTGSTLPVEGGFWA 243 (244)
T ss_dssp HTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred hhCCCCCCcCHHHHHHHHHHHcCcc-ccCCCCCEEEECCCccC
Confidence 4455667889999999999999654 56899999999999754
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=296.40 Aligned_cols=236 Identities=22% Similarity=0.276 Sum_probs=190.0
Q ss_pred cccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHH
Q psy12836 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 132 ~~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~ 211 (429)
.+.++..+++||++|||||++|||+++|++|+++|++|++++|+.+.++ ++ + .+.++ +|+ .++++++
T Consensus 9 ~~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~----~--~~~~~-~D~--~~~~~~~ 75 (249)
T 1o5i_A 9 HHHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS----G--HRYVV-CDL--RKDLDLL 75 (249)
T ss_dssp -------CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT----C--SEEEE-CCT--TTCHHHH
T ss_pred hhhhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh----C--CeEEE-eeH--HHHHHHH
Confidence 3455677899999999999999999999999999999999999974322 22 1 45666 999 4567777
Q ss_pred HHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
++++ .++|+||||||..... .+.+.++|++.+++|+.|++++++.++|.|+ +++.|
T Consensus 76 ~~~~----~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~g 133 (249)
T 1o5i_A 76 FEKV----KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMK------------------EKGWG 133 (249)
T ss_dssp HHHS----CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCE
T ss_pred HHHh----cCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCc
Confidence 7665 3899999999986543 5678899999999999999999999999998 34568
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+++++|+++++.|++++||+||+|+||++.|++..... +..
T Consensus 134 ~iv~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~ 198 (249)
T 1o5i_A 134 RIVAITSFSVISPI------------ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL---SEE 198 (249)
T ss_dssp EEEEECCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS---CHH
T ss_pred EEEEEcchHhcCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccc---hhh
Confidence 99999999887654 567899999999999999999999999999999999999999865422 112
Q ss_pred HH-HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 370 ST-VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 370 ~~-~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.. .+....+.+++.+|+|+|++++||++++ ..+++|+++.+|||....
T Consensus 199 ~~~~~~~~~p~~~~~~~~dvA~~i~~l~s~~-~~~~tG~~~~vdgG~~~~ 247 (249)
T 1o5i_A 199 KKKQVESQIPMRRMAKPEEIASVVAFLCSEK-ASYLTGQTIVVDGGLSKF 247 (249)
T ss_dssp HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTCCCC
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc-ccCCCCCEEEECCCcccC
Confidence 12 2334456677889999999999999654 678999999999997643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=301.70 Aligned_cols=241 Identities=23% Similarity=0.267 Sum_probs=191.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+++||+||||||+||||+++|++|+++|++|++++|+.+++++..+++.....+.++.++.+|++|.++++++++++.
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999988888776555578999999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.++++|+||||||+.... .+.+.+++++++++|+.|++++++.++|.|.+..... ..+.|+||++
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~------------~~~~g~iV~i 150 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAG------------EQKGGHVVNT 150 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTT------------SCCCCEEEEE
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcc------------CCCCcEEEEe
Confidence 9999999999999986433 5678899999999999999999999999997421100 2357999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH--
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV-- 372 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~-- 372 (429)
||.++..+. ++..+|++||+|+++|+++++.|+.+.||+|++|+||+|.|++..........+...
T Consensus 151 sS~a~~~~~------------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 218 (319)
T 3ioy_A 151 ASMAAFLAA------------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVK 218 (319)
T ss_dssp CCGGGTCCC------------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------
T ss_pred cccccccCC------------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhccccc
Confidence 999998765 567899999999999999999999999999999999999999876542111111000
Q ss_pred -----HHhHHh--hhccCCHHHHHHHHHHHhcCCCc
Q psy12836 373 -----VLKPLV--WLFIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 373 -----~~~~~~--~~~~~~peevA~~iv~l~~~~~~ 401 (429)
...... .....+|+++|+.++.++..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~~ 254 (319)
T 3ioy_A 219 PVDKTAVERLAGVHEFGMEPDVIGARVIEAMKANRL 254 (319)
T ss_dssp ----------CCGGGSSBCHHHHHHHHHHHHHTTCS
T ss_pred chhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCCC
Confidence 000000 01226999999999999977643
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=287.50 Aligned_cols=232 Identities=24% Similarity=0.328 Sum_probs=202.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
++|++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++... +.++.++++|++|.++++++++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHH
Confidence 378999999999999999999999999 9999999998888877776543 3478899999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.++++++|+||||||..... .+.+.+++++.+++|+.|++++++.++|.|. +++.++|
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~~~~~~i 140 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALME------------------RQHSGHI 140 (244)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEE
T ss_pred HHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hCCCCEE
Confidence 9999999999999999986433 4568899999999999999999999999997 3456899
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
|++||.++..+. ++..+|++||+++++|+++++.|++++||+|++|+||++.|++...... +.
T Consensus 141 v~isS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~--- 203 (244)
T 2bd0_A 141 FFITSVAATKAF------------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD--EM--- 203 (244)
T ss_dssp EEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS--TT---
T ss_pred EEEecchhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc--cc---
Confidence 999999887654 5678999999999999999999999999999999999999999765432 10
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..++.+|+|+|++++++++++ ..+++|+.+..+++...
T Consensus 204 -------~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 204 -------QALMMMPEDIAAPVVQAYLQP-SRTVVEEIILRPTSGDI 241 (244)
T ss_dssp -------GGGSBCHHHHHHHHHHHHTSC-TTEEEEEEEEEETTCCC
T ss_pred -------cccCCCHHHHHHHHHHHHhCC-ccccchheEEecccccc
Confidence 125789999999999999765 67899999998887554
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=307.44 Aligned_cols=250 Identities=13% Similarity=0.088 Sum_probs=193.0
Q ss_pred CCCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHH--H-----HHHHHhhhc-CC--ceEEEEEee---
Q psy12836 137 ETSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCE--K-----ARKEVVLES-KN--KYVLCRKCD--- 201 (429)
Q Consensus 137 ~~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~--~-----~~~~l~~~~-~~--~~v~~~~~D--- 201 (429)
.++++||++|||||+ +|||+++|++|+++|++|++++|+..... . ..+++.... .. .....+.+|
T Consensus 3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T 1d7o_A 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceec
Confidence 356899999999999 99999999999999999999998642110 0 000111000 00 112333443
Q ss_pred -----CC----C--------HHHHHHHHHHHHHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHHH
Q psy12836 202 -----LA----S--------QESIRAFAEEVKKENKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTML 260 (429)
Q Consensus 202 -----ls----~--------~~sv~~~~~~i~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~ 260 (429)
++ | +++++++++++.+++|++|+||||||+.. +..+.+.++|++++++|+.|+++++++
T Consensus 83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ 162 (297)
T 1d7o_A 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 32 2 56899999999999999999999999742 235678999999999999999999999
Q ss_pred HHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHh
Q psy12836 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT-QAYNQSKLANVLFTRELAKRL 339 (429)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~-~~Y~aSKaal~~l~~~la~el 339 (429)
++|+|+ + .|+||++||.++..+. ++. .+|++||+|+++|+++|+.|+
T Consensus 163 ~~~~m~------------------~--~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~ 210 (297)
T 1d7o_A 163 FLPIMN------------------P--GGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEA 210 (297)
T ss_dssp HGGGEE------------------E--EEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc------------------c--CceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999885 2 3899999999887654 444 589999999999999999999
Q ss_pred cC-CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 340 EG-TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 340 ~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
++ +||+||+|+||+|+|++.+.... .+.....+....|.+++.+|+|+|++++||+++ ...+++|++|.+|||+...
T Consensus 211 ~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~-~~~~itG~~i~vdgG~~~~ 288 (297)
T 1d7o_A 211 GRKQNIRVNTISAGPLGSRAAKAIGF-IDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSP-LASAITGATIYVDNGLNSM 288 (297)
T ss_dssp HHHHCCEEEEEEECCCBCCCSSCCSH-HHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGC
T ss_pred CcccCcEEEEEeccccccchhhhccc-cHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCc-cccCCCCCEEEECCCceee
Confidence 85 89999999999999999765321 122222233345667789999999999999965 4789999999999998765
Q ss_pred cc
Q psy12836 419 VD 420 (429)
Q Consensus 419 ~~ 420 (429)
..
T Consensus 289 ~~ 290 (297)
T 1d7o_A 289 GV 290 (297)
T ss_dssp SS
T ss_pred cC
Confidence 43
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=304.83 Aligned_cols=230 Identities=20% Similarity=0.260 Sum_probs=196.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE---------EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMA---------CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~---------~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
.++++||++|||||++|||+++|++|+++|++|+++ +|+.+++++..+++..... . ..+|+++.++
T Consensus 4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~--~---~~~D~~~~~~ 78 (319)
T 1gz6_A 4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--K---AVANYDSVEA 78 (319)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--E---EEEECCCGGG
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC--e---EEEeCCCHHH
Confidence 457899999999999999999999999999999996 5677888888777765432 2 2489999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
++++++++.++++++|+||||||+.... .+.+.++|+.++++|+.|+++++++++|+|+ +
T Consensus 79 ~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~------------------~ 140 (319)
T 1gz6_A 79 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMK------------------K 140 (319)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------H
Confidence 9999999999999999999999987543 4678999999999999999999999999998 4
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~ 365 (429)
++.|+||++||.++..+. ++..+|++||+|+++|++.|++|++++||+||+|+||++ |++.+....
T Consensus 141 ~~~grIV~vsS~~~~~~~------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~- 206 (319)
T 1gz6_A 141 QNYGRIIMTASASGIYGN------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMP- 206 (319)
T ss_dssp HTCEEEEEECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSC-
T ss_pred cCCCEEEEECChhhccCC------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCC-
Confidence 456899999999887764 567899999999999999999999999999999999998 877543211
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+. . ....+|+|+|++++||++++ .+++|++|.++||+.
T Consensus 207 -~~----~------~~~~~p~dvA~~~~~l~s~~--~~~tG~~~~v~GG~~ 244 (319)
T 1gz6_A 207 -ED----L------VEALKPEYVAPLVLWLCHES--CEENGGLFEVGAGWI 244 (319)
T ss_dssp -HH----H------HHHSCGGGTHHHHHHHTSTT--CCCCSCEEEEETTEE
T ss_pred -hh----h------hccCCHHHHHHHHHHHhCch--hhcCCCEEEECCCeE
Confidence 11 1 12468999999999999764 478999999999864
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=329.77 Aligned_cols=230 Identities=26% Similarity=0.289 Sum_probs=194.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh---------hHHHHHHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL---------DKCEKARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~---------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
..+++||++|||||++|||+++|++|+++|++|++.+|+. +.++++.+++..... ++ .+|++|.++
T Consensus 3 ~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~--~~---~~d~~d~~~ 77 (604)
T 2et6_A 3 PVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGG--VA---VADYNNVLD 77 (604)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTC--EE---EEECCCTTC
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCC--eE---EEEcCCHHH
Confidence 3468999999999999999999999999999999998765 667777777765432 32 368888888
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
++++++++.+++|+||+||||||+... ..+++.++|+++|++|+.|+|+++++++|+|+ +
T Consensus 78 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~------------------~ 139 (604)
T 2et6_A 78 GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQ------------------K 139 (604)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------H
Confidence 999999999999999999999998643 36689999999999999999999999999998 4
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~ 365 (429)
++.|+||++||.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+|| +.|+|......
T Consensus 140 ~~~G~IVnisS~ag~~~~------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~~- 205 (604)
T 2et6_A 140 QKYGRIVNTSSPAGLYGN------------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIMP- 205 (604)
T ss_dssp HTCEEEEEECCHHHHHCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTSC-
T ss_pred cCCCEEEEECCHHHcCCC------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccCC-
Confidence 457999999999998875 5688999999999999999999999999999999998 68988654321
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+. . ....+|+|+|..++||+++. .++||+.|.+|||+.
T Consensus 206 -~~----~------~~~~~pe~vA~~v~~L~s~~--~~itG~~~~vdgG~~ 243 (604)
T 2et6_A 206 -PP----M------LEKLGPEKVAPLVLYLSSAE--NELTGQFFEVAAGFY 243 (604)
T ss_dssp -HH----H------HTTCSHHHHHHHHHHHTSSS--CCCCSCEEEEETTEE
T ss_pred -hh----h------hccCCHHHHHHHHHHHhCCc--ccCCCCEEEECCCeE
Confidence 11 1 12358999999999999764 789999999999864
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=311.23 Aligned_cols=249 Identities=16% Similarity=0.125 Sum_probs=164.1
Q ss_pred CCCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcCh-----------hHHH-----------HHHHHHhhhcCC-
Q psy12836 138 TSARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDL-----------DKCE-----------KARKEVVLESKN- 192 (429)
Q Consensus 138 ~~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~-----------~~~~-----------~~~~~l~~~~~~- 192 (429)
++++||++||||| ++|||+++|++|+++|++|++++|+. ++++ ++.+++......
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL 84 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence 4688999999999 89999999999999999999998753 2222 122222221100
Q ss_pred ceEEEEEee------------CCC--------HHHHHHHHHHHHHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhc
Q psy12836 193 KYVLCRKCD------------LAS--------QESIRAFAEEVKKENKKINVLINNAGVSG----CRKMLTEEKIELQLG 248 (429)
Q Consensus 193 ~~v~~~~~D------------ls~--------~~sv~~~~~~i~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~ 248 (429)
....++.+| ++| .++++++++++.+++|+||+||||||+.. +..+.+.++|+++++
T Consensus 85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~ 164 (319)
T 2ptg_A 85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS 164 (319)
T ss_dssp CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence 001233333 333 45899999999999999999999999752 236678999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc-chhHHHHHH
Q psy12836 249 VNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT-QAYNQSKLA 327 (429)
Q Consensus 249 vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~-~~Y~aSKaa 327 (429)
+|+.|+++++++++|+|+ + .|+||++||.++..+. ++. .+|++||+|
T Consensus 165 vN~~g~~~l~~~~~~~m~------------------~--~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaa 212 (319)
T 2ptg_A 165 SSSYSFVSLLQHFLPLMK------------------E--GGSALALSYIASEKVI------------PGYGGGMSSAKAA 212 (319)
T ss_dssp HHTHHHHHHHHHHGGGEE------------------E--EEEEEEEEECC------------------------------
T ss_pred HhhHHHHHHHHHHHHHHh------------------c--CceEEEEecccccccc------------CccchhhHHHHHH
Confidence 999999999999999885 3 3899999999887654 444 589999999
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEEeCCCccCCcccCCCCC-ch----hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCc
Q psy12836 328 NVLFTRELAKRLEG-TGITVNAVHPGIVNTDILRHSSYY-DS----WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 328 l~~l~~~la~el~~-~gIrVn~V~PG~v~T~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~ 401 (429)
+++|+++|+.|+++ +||+||+|+||+|+|+|.+..... .+ ...+.+....|.+++.+|+|+|++++||+++ ..
T Consensus 213 l~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~-~~ 291 (319)
T 2ptg_A 213 LESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSP-LA 291 (319)
T ss_dssp THHHHHHHHHHHHHHHCCEEEEEEECCCC-------------------------------CCCHHHHHHHHHHHTSG-GG
T ss_pred HHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCc-cc
Confidence 99999999999985 899999999999999987653210 00 1111122345667889999999999999965 57
Q ss_pred ccCCceEEecCccccccc
Q psy12836 402 ENVSGKYFACYDRYEARV 419 (429)
Q Consensus 402 ~~vtG~~i~~~gg~~~~~ 419 (429)
.++||++|.+|||+....
T Consensus 292 ~~itG~~i~vdGG~~~~~ 309 (319)
T 2ptg_A 292 RAVTGATLYVDNGLHAMG 309 (319)
T ss_dssp TTCCSCEEEESTTCTTC-
T ss_pred CCccCCEEEECCCceeec
Confidence 899999999999987654
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=309.22 Aligned_cols=249 Identities=16% Similarity=0.101 Sum_probs=191.2
Q ss_pred CCCCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhH------HHH-HHHHHhhhcCCc---eEEEEEee---
Q psy12836 137 ETSARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDK------CEK-ARKEVVLESKNK---YVLCRKCD--- 201 (429)
Q Consensus 137 ~~~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~------~~~-~~~~l~~~~~~~---~v~~~~~D--- 201 (429)
.++++||++||||| ++|||+++|++|+++|++|++++|+... ... ..+++.....+. .+.++.+|
T Consensus 4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (315)
T 2o2s_A 4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAF 83 (315)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTC
T ss_pred cccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccc
Confidence 34689999999999 8999999999999999999999986420 000 011111110111 01233333
Q ss_pred ---------CCC--------HHHHHHHHHHHHHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHHH
Q psy12836 202 ---------LAS--------QESIRAFAEEVKKENKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTML 260 (429)
Q Consensus 202 ---------ls~--------~~sv~~~~~~i~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~ 260 (429)
++| .++++++++++.+++|++|+||||||+.. +..+.+.++|++++++|+.|++++++.
T Consensus 84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 163 (315)
T 2o2s_A 84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH 163 (315)
T ss_dssp SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 333 56899999999999999999999999753 235678999999999999999999999
Q ss_pred HHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHh
Q psy12836 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT-QAYNQSKLANVLFTRELAKRL 339 (429)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~-~~Y~aSKaal~~l~~~la~el 339 (429)
++|+|+ + .|+||++||.++..+. ++. .+|++||+|+++|+++|+.|+
T Consensus 164 ~~~~m~------------------~--~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el 211 (315)
T 2o2s_A 164 FGPIMN------------------E--GGSAVTLSYLAAERVV------------PGYGGGMSSAKAALESDTRTLAWEA 211 (315)
T ss_dssp HSTTEE------------------E--EEEEEEEEEGGGTSCC------------TTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh------------------c--CCEEEEEecccccccC------------CCccHHHHHHHHHHHHHHHHHHHHh
Confidence 999885 3 3899999999887654 344 589999999999999999999
Q ss_pred cC-CCeEEEEEeCCCccCCcccCCCCC-c----hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 340 EG-TGITVNAVHPGIVNTDILRHSSYY-D----SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 340 ~~-~gIrVn~V~PG~v~T~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
++ +||+||+|+||+|+|++.+..... . ......+....|.+++.+|+|+|++++||+++ ...++||++|.+||
T Consensus 212 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~~itG~~i~vdG 290 (315)
T 2o2s_A 212 GQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSP-LARAVSGVTLYVDN 290 (315)
T ss_dssp HHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSG-GGTTCCSCEEEEST
T ss_pred CcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCc-hhccCcCCEEEECC
Confidence 85 899999999999999986543210 1 11112223345667889999999999999964 57899999999999
Q ss_pred ccccc
Q psy12836 414 RYEAR 418 (429)
Q Consensus 414 g~~~~ 418 (429)
|....
T Consensus 291 G~~~~ 295 (315)
T 2o2s_A 291 GLHAM 295 (315)
T ss_dssp TGGGC
T ss_pred Ceeee
Confidence 98754
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=291.26 Aligned_cols=245 Identities=22% Similarity=0.283 Sum_probs=198.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.......++.++.+|++|.++++++++++.
T Consensus 27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999888888877665444578889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC--CcEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA--PSRII 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~IV 292 (429)
+.++++|+||||||+.... .+.+.++|++.+++|+.+++++++.+++.|++ .+ .|+||
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~------------------~~~~~g~iv 168 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKE------------------RNVDDGHII 168 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------TTCCSCEEE
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cCCCCceEE
Confidence 9999999999999986533 45688999999999999999999999999973 33 48999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
++||.++.... ..++...|++||+++++|++.++.|++ +.||+||+|+||++.|++..........
T Consensus 169 ~isS~~~~~~~----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~-- 236 (279)
T 1xg5_A 169 NINSMSGHRVL----------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPE-- 236 (279)
T ss_dssp EECCGGGTSCC----------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHH--
T ss_pred EEcChhhcccC----------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChh--
Confidence 99998876321 124577899999999999999999998 8999999999999999985321111111
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
......+..+..+|+|+|++++++++++ ....+|+....++
T Consensus 237 -~~~~~~~~~~~~~~~dvA~~i~~l~~~~-~~~~~g~i~i~~~ 277 (279)
T 1xg5_A 237 -KAAATYEQMKCLKPEDVAEAVIYVLSTP-AHIQIGDIQMRPT 277 (279)
T ss_dssp -HHHHHHC---CBCHHHHHHHHHHHHHSC-TTEEEEEEEEEET
T ss_pred -HHhhhcccccCCCHHHHHHHHHHHhcCC-cceEeeeEEEccC
Confidence 1122223346789999999999999876 4566776544433
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=286.00 Aligned_cols=238 Identities=23% Similarity=0.243 Sum_probs=197.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ . .+.++.+|++|.++++++++
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~---- 72 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----P--GIEPVCVDLGDWDATEKALG---- 72 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT----
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c--CCCcEEecCCCHHHHHHHHH----
Confidence 4688999999999999999999999999999999999988776655432 2 24456999999999988876
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~v 294 (429)
.++++|+||||||..... .+.+.+++++.+++|+.|++++++.+++.|.+ ++ .++||++
T Consensus 73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~------------------~~~~~~iv~~ 134 (244)
T 1cyd_A 73 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMIN------------------RGVPGSIVNV 134 (244)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------HTCCEEEEEE
T ss_pred HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh------------------CCCCeEEEEE
Confidence 568999999999986533 55688999999999999999999999999973 33 6899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||++++.+++.++.|++++||++++|+||.+.|++...... .+.+...+.
T Consensus 135 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~ 201 (244)
T 1cyd_A 135 SSMVAHVTF------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA-DPEFARKLK 201 (244)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC-CHHHHHHHH
T ss_pred cchhhcCCC------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccccc-CHHHHHHHH
Confidence 998877653 5678999999999999999999999999999999999999998653211 122323344
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++.+|+|+|++++++++++ ..+++|+.+.+|||...
T Consensus 202 ~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gG~~~ 243 (244)
T 1cyd_A 202 ERHPLRKFAEVEDVVNSILFLLSDR-SASTSGGGILVDAGYLA 243 (244)
T ss_dssp HHSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSSEEEESTTGGG
T ss_pred hcCCccCCCCHHHHHHHHHHHhCch-hhcccCCEEEECCCccC
Confidence 4455567889999999999999654 67899999999999753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=290.31 Aligned_cols=244 Identities=23% Similarity=0.273 Sum_probs=204.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.++++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... .++.++++|++|.++++++++++
T Consensus 16 ~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 93 (274)
T 1ja9_A 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKA 93 (274)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999 7777777777765433 36888999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.++++++|+||||||..... .+.+.+++++.+++|+.+++++++++++.|+ + +++||+
T Consensus 94 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~--~~~iv~ 153 (274)
T 1ja9_A 94 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR------------------R--GGRIIL 153 (274)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE------------------E--EEEEEE
T ss_pred HHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------h--CCEEEE
Confidence 99999999999999986533 4678899999999999999999999998874 2 289999
Q ss_pred EcCcccc-cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---------
Q psy12836 294 VSSVAHK-RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------- 363 (429)
Q Consensus 294 vSS~~~~-~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------- 363 (429)
+||.++. .+. ++..+|++||++++.+++.++.|++++||++++|+||.+.|++.....
T Consensus 154 ~sS~~~~~~~~------------~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 221 (274)
T 1ja9_A 154 TSSIAAVMTGI------------PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYK 221 (274)
T ss_dssp ECCGGGTCCSC------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCT
T ss_pred EcChHhccCCC------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccc
Confidence 9999886 443 567899999999999999999999999999999999999999865200
Q ss_pred CCc-hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 364 YYD-SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 364 ~~~-~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
... +.....+....+.+++.+|+|+|++++++++++ ..+++|+.|.++||.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~-~~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 222 GMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEE-SEWINGQVIKLTGGG 273 (274)
T ss_dssp TCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred cCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcc-cccccCcEEEecCCc
Confidence 001 222222333445567889999999999999654 567899999999985
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=326.87 Aligned_cols=229 Identities=25% Similarity=0.287 Sum_probs=189.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||++|||||++|||+++|++|+++|++|++.+|.. +++..+++.... .++..+.+|++ ++++++++++.+
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~g--~~~~~~~~Dv~--~~~~~~~~~~~~ 391 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAAG--GEAWPDQHDVA--KDSEAIIKNVID 391 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHTT--CEEEEECCCHH--HHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhcC--CeEEEEEcChH--HHHHHHHHHHHH
Confidence 478999999999999999999999999999999998632 344555554432 36777788884 556788999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||+||||||+.... .+++.++|+++|++|+.|+++++++++|+|+ +++.|+||++|
T Consensus 392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~------------------~~~~G~IVnis 453 (604)
T 2et6_A 392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFV------------------EKQFGRIINIT 453 (604)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEEC
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------HcCCCEEEEEC
Confidence 999999999999986533 5779999999999999999999999999998 45679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+||. .|+|...... + .
T Consensus 454 S~ag~~~~------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~~~~--~----~--- 511 (604)
T 2et6_A 454 STSGIYGN------------FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLSIMR--E----Q--- 511 (604)
T ss_dssp CHHHHSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC-----------------
T ss_pred ChhhccCC------------CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccccCc--h----h---
Confidence 99998775 56789999999999999999999999999999999995 9998654211 0 0
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.....+|+|+|.+++||+++. .. +||+.|.+|||+..
T Consensus 512 ---~~~~~~pe~vA~~v~~L~s~~-~~-itG~~~~vdGG~~~ 548 (604)
T 2et6_A 512 ---DKNLYHADQVAPLLVYLGTDD-VP-VTGETFEIGGGWIG 548 (604)
T ss_dssp ----CCSSCGGGTHHHHHHTTSTT-CC-CCSCEEEEETTEEE
T ss_pred ---hccCCCHHHHHHHHHHHhCCc-cC-CCCcEEEECCCeeE
Confidence 013458999999999999765 56 99999999999654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=292.70 Aligned_cols=226 Identities=23% Similarity=0.271 Sum_probs=187.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.++++++++++.++
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999998877665543 236888999999999999999999999
Q ss_pred CCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||.... ..+.+.++|++++++|+.|++++++.++|.|+ +++.|+||++||
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~------------------~~~~~~iv~~sS 138 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMR------------------ERGSGSVVNISS 138 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hcCCCEEEEEcC
Confidence 9999999999998643 35678999999999999999999999999998 446789999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----CchhHHH-
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDSWLST- 371 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~~~~~~- 371 (429)
.++..+. ++..+|++||+++++++++++.|++++||+||+|+||++.|++...... ..+....
T Consensus 139 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 206 (281)
T 3m1a_A 139 FGGQLSF------------AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEK 206 (281)
T ss_dssp GGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHH
T ss_pred ccccCCC------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHH
Confidence 9887764 6788999999999999999999999999999999999999998654321 0111111
Q ss_pred -----HHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 372 -----VVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 372 -----~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
......+..++.+|+|+|+++++++.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~ 239 (281)
T 3m1a_A 207 VGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTE 239 (281)
T ss_dssp HHHHHHHHHC-----CBCHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCC
Confidence 1112234456789999999999999776
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=291.82 Aligned_cols=234 Identities=25% Similarity=0.289 Sum_probs=190.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i~ 216 (429)
+++||+++||||++|||+++|++|+++|++ |++++|+.+. +..+++....++.++.++.+|++|. ++++++++++.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence 578999999999999999999999999996 9999998742 2233344333345788999999998 99999999999
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+.++++|+||||||+. +.+++++.+++|+.|++++++.++|.|.+.. ....|+||++||
T Consensus 80 ~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---------------~~~~g~iv~isS 138 (254)
T 1sby_A 80 DQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRK---------------GGPGGIIANICS 138 (254)
T ss_dssp HHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGG---------------TCCCEEEEEECC
T ss_pred HhcCCCCEEEECCccC------CHHHHhhhheeeehhHHHHHHHHHHHHHHhc---------------CCCCCEEEEECc
Confidence 9999999999999974 4577999999999999999999999996310 112589999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~~~~ 373 (429)
.++..+. ++..+|++||+++++|+++++.++.++||+||+|+||+++|++.+..... .+.. ...
T Consensus 139 ~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~ 205 (254)
T 1sby_A 139 VTGFNAI------------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRV-AEL 205 (254)
T ss_dssp GGGTSCC------------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTH-HHH
T ss_pred hhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHH-HHH
Confidence 9887654 56789999999999999999999988899999999999999987653210 1111 112
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.... ...+|+|+|+.++++++ .+++|+++.+|||.
T Consensus 206 ~~~~---~~~~~~dvA~~i~~~~~----~~~~G~~~~v~gG~ 240 (254)
T 1sby_A 206 LLSH---PTQTSEQCGQNFVKAIE----ANKNGAIWKLDLGT 240 (254)
T ss_dssp HTTS---CCEEHHHHHHHHHHHHH----HCCTTCEEEEETTE
T ss_pred HhcC---CCCCHHHHHHHHHHHHH----cCCCCCEEEEeCCc
Confidence 1111 23589999999999984 36799999999985
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=304.15 Aligned_cols=241 Identities=15% Similarity=0.043 Sum_probs=194.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEcChhHHH------------HHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAK-RKAKVIMACRDLDKCE------------KARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~-~G~~Vil~~R~~~~~~------------~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
.-.||++|||||++|||+++|+.|++ +|++|++++|+.+..+ ...+.+... +.++..+.+|++|+
T Consensus 44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd~ 121 (405)
T 3zu3_A 44 ANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFSD 121 (405)
T ss_dssp TTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSH
T ss_pred CCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCCH
Confidence 35689999999999999999999999 9999999998765422 122233332 34678899999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccC---------------CCC---------------------CCCCHHHHHhhhcc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVS---------------GCR---------------------KMLTEEKIELQLGV 249 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~---------------~~~---------------------~~~~~~~~~~~~~v 249 (429)
++++++++++.+++|+||+||||||.. .+. .+.++++|++++++
T Consensus 122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~V 201 (405)
T 3zu3_A 122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAV 201 (405)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 999999999999999999999999974 121 45689999999999
Q ss_pred hhHHHH-HHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc--chhHHHHH
Q psy12836 250 NHMGHF-LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT--QAYNQSKL 326 (429)
Q Consensus 250 N~~g~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~--~~Y~aSKa 326 (429)
|..+.| ++++.+.+.+. ...+|+||++||+++..+. +.. .+|++||+
T Consensus 202 n~~~~~~~~~~~~~~~~m------------------~~~gG~IVniSSi~~~~~~------------p~~~~~aY~AaKa 251 (405)
T 3zu3_A 202 MGGEDWQMWIDALLDAGV------------------LAEGAQTTAFTYLGEKITH------------DIYWNGSIGAAKK 251 (405)
T ss_dssp HSSHHHHHHHHHHHHHTC------------------EEEEEEEEEEECCCCGGGT------------TTTTTSHHHHHHH
T ss_pred hchhHHHHHHHHHHHHhh------------------hhCCcEEEEEeCchhhCcC------------CCccchHHHHHHH
Confidence 999998 77877765422 1235899999999987764 444 89999999
Q ss_pred HHHHHHHHHHHHhcCC-CeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCC
Q psy12836 327 ANVLFTRELAKRLEGT-GITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVS 405 (429)
Q Consensus 327 al~~l~~~la~el~~~-gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vt 405 (429)
|+.+|+++||.||+++ |||||+|+||+|.|++....+.. + .+...... ++++.++||++|+.+.||+++ ++.
T Consensus 252 al~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~~s~~ip~~-p-~y~~~l~~-~mkr~G~~Ed~a~~i~~L~sd----~l~ 324 (405)
T 3zu3_A 252 DLDQKVLAIRESLAAHGGGDARVSVLKAVVSQASSAIPMM-P-LYLSLLFK-VMKEKGTHEGCIEQVYSLYKD----SLC 324 (405)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEEECCCCCCHHHHTSTTH-H-HHHHHHHH-HHHHHTCCCCHHHHHHHHHHH----TTS
T ss_pred HHHHHHHHHHHHhCcccCeEEEEEEeCCCcCchhhcCCCC-c-HHHHHHHH-HHhcCCCcHHHHHHHHHHHhc----ccc
Confidence 9999999999999999 99999999999999998776531 2 22222222 468999999999999999965 567
Q ss_pred ceEEecCcccccc
Q psy12836 406 GKYFACYDRYEAR 418 (429)
Q Consensus 406 G~~i~~~gg~~~~ 418 (429)
|..+.+|++...+
T Consensus 325 ~~~~~~D~~~~~r 337 (405)
T 3zu3_A 325 GDSPHMDQEGRLR 337 (405)
T ss_dssp SSCCCBCTTSCEE
T ss_pred CCCCCcCCCcCCC
Confidence 8888788776554
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=279.69 Aligned_cols=224 Identities=25% Similarity=0.268 Sum_probs=183.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++. ++.++.+|++|.++++++++++.+.++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAFG 77 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999888776655542 467789999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||..... .+.+.+++++.+++|+.|++++++.++|.|+ +.+.++||++||.+
T Consensus 78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~~~~~~iv~isS~~ 139 (234)
T 2ehd_A 78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALL------------------RRGGGTIVNVGSLA 139 (234)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TTTCEEEEEECCTT
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hCCCcEEEEECCch
Confidence 999999999986432 5668899999999999999999999999998 55679999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++..+|++||++++++++.++.|++++||++|+|+||+++|++..... .. +
T Consensus 140 ~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~----~----- 195 (234)
T 2ehd_A 140 GKNPF------------KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNTP---GQ----A----- 195 (234)
T ss_dssp TTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC--------------------------
T ss_pred hcCCC------------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccccc---cc----c-----
Confidence 76653 567899999999999999999999999999999999999999865421 00 1
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+|+|+|++++++++++ ..+++|+.+..++..
T Consensus 196 --~~~~~~dvA~~~~~l~~~~-~~~~~g~~~~~~~~~ 229 (234)
T 2ehd_A 196 --WKLKPEDVAQAVLFALEMP-GHAMVSEIELRPTRP 229 (234)
T ss_dssp ----CCHHHHHHHHHHHHHSC-CSSCCCEEECCC---
T ss_pred --CCCCHHHHHHHHHHHhCCC-cccccceEEEeecCC
Confidence 1369999999999999775 578999987666543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=290.77 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=190.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+..||++|||||++|||+++|++|+++|++|++++|+.++.. ...+.+|++|.++++++++++.
T Consensus 17 ~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~d~~d~~~v~~~~~~~~ 82 (251)
T 3orf_A 17 RGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA--------------DHSFTIKDSGEEEIKSVIEKIN 82 (251)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS--------------SEEEECSCSSHHHHHHHHHHHH
T ss_pred cccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------ccceEEEeCCHHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999876432 1246889999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++++|+||||||+.... .+.+.+++++.+++|+.|+++++++++|.|+ + .|+||+
T Consensus 83 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g~iv~ 142 (251)
T 3orf_A 83 SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLN------------------Q--GGLFVL 142 (251)
T ss_dssp TTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE------------------E--EEEEEE
T ss_pred HHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhc------------------c--CCEEEE
Confidence 9999999999999986543 4567899999999999999999999999885 2 489999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++ ++||+||+|+||+|+|++.+...
T Consensus 143 isS~~~~~~~------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~-------- 202 (251)
T 3orf_A 143 TGASAALNRT------------SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYM-------- 202 (251)
T ss_dssp ECCGGGGSCC------------TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHC--------
T ss_pred EechhhccCC------------CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhc--------
Confidence 9999988764 6688999999999999999999987 89999999999999999865432
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..+..+|+|+|++++++++++...+++|+.+.++++...
T Consensus 203 ---~~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 203 ---SDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp ---TTSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTE
T ss_pred ---ccccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCCcc
Confidence 1123356789999999999999885678999999999877543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=290.98 Aligned_cols=236 Identities=30% Similarity=0.439 Sum_probs=192.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH-HHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ-ESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~-~sv~~~~~~i 215 (429)
...+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++|. ++++++++++
T Consensus 7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHH
Confidence 4467899999999999999999999999999999999999999998888866543 4688999999998 9999999999
Q ss_pred HHhCCCeeEEEEccccCCC--------------------------------CCCCCHHHHHhhhcchhHHHHHHHHHHHH
Q psy12836 216 KKENKKINVLINNAGVSGC--------------------------------RKMLTEEKIELQLGVNHMGHFLLTMLLLD 263 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~--------------------------------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 263 (429)
.++++++|+||||||+... ....+.+++++++++|+.|++++++.++|
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 9999999999999998742 13457889999999999999999999999
Q ss_pred HHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcc------------------------------cCCCCC
Q psy12836 264 KLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKE------------------------------DLNSEN 313 (429)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~------------------------------~l~~~~ 313 (429)
.|+ +++.|+||++||.++..+..... ......
T Consensus 166 ~l~------------------~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (311)
T 3o26_A 166 LLQ------------------LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN 227 (311)
T ss_dssp HHT------------------TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred hhc------------------cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccc
Confidence 997 55679999999998876532100 000111
Q ss_pred CC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHH
Q psy12836 314 SY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTI 392 (429)
Q Consensus 314 ~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~i 392 (429)
.+ ++..+|++||+|+++|++.|+.|+.+ |+||+|+||+|.|+|.+... ..+|+++|+.+
T Consensus 228 ~~~~~~~~Y~~SK~a~~~~~~~la~e~~~--i~v~~v~PG~v~T~~~~~~~------------------~~~~~~~a~~~ 287 (311)
T 3o26_A 228 GWPSFGAAYTTSKACLNAYTRVLANKIPK--FQVNCVCPGLVKTEMNYGIG------------------NYTAEEGAEHV 287 (311)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHHHHHHCTT--SEEEEECCCSBCSGGGTTCC------------------SBCHHHHHHHH
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhhcCC--ceEEEecCCceecCCcCCCC------------------CCCHHHHHHHH
Confidence 12 35678999999999999999999964 99999999999999976543 24899999999
Q ss_pred HHHhcCCCcccCCceEEecC
Q psy12836 393 VYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 393 v~l~~~~~~~~vtG~~i~~~ 412 (429)
++++..++ ...+|.+|..+
T Consensus 288 ~~~~~~~~-~~~~g~~~~~s 306 (311)
T 3o26_A 288 VRIALFPD-DGPSGFFYDCS 306 (311)
T ss_dssp HHHHTCCS-SCCCSCEETC-
T ss_pred HHHHhCCC-CCCCceEeccc
Confidence 99998775 45677776544
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=290.87 Aligned_cols=222 Identities=17% Similarity=0.058 Sum_probs=188.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
..++|++|||||++|||+++|++|+++|++|++++|+.++.+ ....++++|++|+++++++++++.++
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999876432 13567889999999999999999999
Q ss_pred C--CCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 219 N--KKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 219 ~--g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+ +++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|+|+ + .|+||+
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~------------------~--~g~iv~ 131 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK------------------E--GGLLTL 131 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE------------------E--EEEEEE
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhc------------------c--CCEEEE
Confidence 8 7999999999986432 4557789999999999999999999999885 2 489999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
+||.++..+. ++..+|++||+|+++|+++++.|++ ++||+||+|+||+++|++.+..... .
T Consensus 132 isS~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~~~-~---- 194 (241)
T 1dhr_A 132 AGAKAALDGT------------PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE-A---- 194 (241)
T ss_dssp ECCGGGGSCC------------TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTT-S----
T ss_pred ECCHHHccCC------------CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccCcc-h----
Confidence 9999887764 5678999999999999999999999 8999999999999999986532110 0
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
......+|+|+|++++++++++ ..+++|+++.++|+..
T Consensus 195 ------~~~~~~~~~~vA~~v~~l~~~~-~~~~~G~~~~v~g~~~ 232 (241)
T 1dhr_A 195 ------DFSSWTPLEFLVETFHDWITGN-KRPNSGSLIQVVTTDG 232 (241)
T ss_dssp ------CGGGSEEHHHHHHHHHHHHTTT-TCCCTTCEEEEEEETT
T ss_pred ------hhccCCCHHHHHHHHHHHhcCC-CcCccceEEEEeCCCC
Confidence 0123457999999999999654 6789999999999865
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=286.65 Aligned_cols=222 Identities=14% Similarity=0.043 Sum_probs=188.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|+||++|||||++|||+++|++|+++|++|++++|+.++.+ ....++.+|++|.++++++++++.+.+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999876532 135677899999999999999999998
Q ss_pred --CCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 220 --KKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 220 --g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||||||+.... .+.+.++|++.+++|+.+++++++.++|.|+ + .|+||++
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g~iv~i 128 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK------------------P--GGLLQLT 128 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE------------------E--EEEEEEE
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhc------------------c--CCEEEEE
Confidence 7999999999986432 3456789999999999999999999999885 2 4899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
||.++..+. ++..+|++||+|+++|+++++.|++ ++||+||+|+||+++|++.+......
T Consensus 129 sS~~~~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~------ 190 (236)
T 1ooe_A 129 GAAAAMGPT------------PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNA------ 190 (236)
T ss_dssp CCGGGGSCC------------TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTC------
T ss_pred CchhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchhhcCCCc------
Confidence 999887654 6688999999999999999999998 99999999999999999865321100
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
......+|+|+|+.+++++.++...+++|++|.++|+..
T Consensus 191 -----~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~~ 229 (236)
T 1ooe_A 191 -----DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTENG 229 (236)
T ss_dssp -----CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETT
T ss_pred -----cccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCCC
Confidence 112456899999999966645567899999999999865
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=305.73 Aligned_cols=240 Identities=15% Similarity=0.024 Sum_probs=190.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEcChhHHHH------------HHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAK-RKAKVIMACRDLDKCEK------------ARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~-~G~~Vil~~R~~~~~~~------------~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
.||+||||||++|||+++|+.|++ +|++|++++|+.+.+++ ..+++... +.++..+.+|++|.++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDAA 137 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence 589999999999999999999999 99999999998654321 22344333 3468889999999999
Q ss_pred HHHHHHHHHHhC-CCeeEEEEccccC---------------CCC---------------------CCCCHHHHHhhhcch
Q psy12836 208 IRAFAEEVKKEN-KKINVLINNAGVS---------------GCR---------------------KMLTEEKIELQLGVN 250 (429)
Q Consensus 208 v~~~~~~i~~~~-g~iD~lI~nAG~~---------------~~~---------------------~~~~~~~~~~~~~vN 250 (429)
++++++++.+++ |+||+||||||.. .+. .+.+.++|+.++++|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 999999999999 9999999999972 111 146899999999999
Q ss_pred hHHHH-HHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc--chhHHHHHH
Q psy12836 251 HMGHF-LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT--QAYNQSKLA 327 (429)
Q Consensus 251 ~~g~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~--~~Y~aSKaa 327 (429)
..+.| .+++.+.+.+. ...+|+||++||+++..+. +.. .+|++||+|
T Consensus 218 ~~~~~~~~~~a~~~~~m------------------~~~gG~IVniSSi~g~~~~------------p~~~~~aY~ASKaA 267 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGV------------------LADGARSVAFSYIGTEITW------------PIYWHGALGKAKVD 267 (422)
T ss_dssp SSHHHHHHHHHHHHTTC------------------EEEEEEEEEEEECCCGGGH------------HHHTSHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH------------------hhCCCEEEEEeCchhhccC------------CCccchHHHHHHHH
Confidence 99987 77777765332 2235899999999987654 334 789999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCC-c
Q psy12836 328 NVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVS-G 406 (429)
Q Consensus 328 l~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vt-G 406 (429)
+.+|+++||.|++++|||||+|+||+|.|++....+... .+.... ..++++.++|||+|+.++||+++. + |.+ |
T Consensus 268 l~~lTrsLA~Ela~~GIRVNaVaPG~i~T~~~~~ip~~~--~~~~~~-~~~m~r~G~pEdva~~v~~L~sd~-l-y~~~~ 342 (422)
T 3s8m_A 268 LDRTAQRLNARLAKHGGGANVAVLKSVVTQASAAIPVMP--LYISMV-YKIMKEKGLHEGTIEQLDRLFRER-L-YRQDG 342 (422)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTHHH--HHHHHH-HHHHHHTTCCCCHHHHHHHHHHHT-T-TCTTC
T ss_pred HHHHHHHHHHHhCccCEEEEEEEcCCCcChhhhcCCCCh--HHHHHH-HhhhcCCcChHHHHHHHHHHhcch-h-hccCC
Confidence 999999999999999999999999999999987764211 111111 235689999999999999999774 2 554 6
Q ss_pred eEEecCccccc
Q psy12836 407 KYFACYDRYEA 417 (429)
Q Consensus 407 ~~i~~~gg~~~ 417 (429)
+...+|+....
T Consensus 343 ~~~~~d~~~~~ 353 (422)
T 3s8m_A 343 QPAEVDEQNRL 353 (422)
T ss_dssp CCCCCCTTSCE
T ss_pred CCcccCCCCCC
Confidence 65546665444
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=291.96 Aligned_cols=230 Identities=21% Similarity=0.197 Sum_probs=177.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-----hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-----LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-----~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
++++|++|||||++|||+++|++|+++|++|++++|+ .+++++..+.+.... .++.++++|++|.++++++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~Dvtd~~~v~~~~~ 79 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND--VDLRTLELDVQSQVSVDRAID 79 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHH
Confidence 4679999999999999999999999999999998876 455555555554432 368899999999999999999
Q ss_pred HHHHhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 214 EVKKENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++.+++|++|+||||||+... ..+.+.+++++++++|+.|+++++++++|+|+ +++.|+|
T Consensus 80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~------------------~~~~g~i 141 (324)
T 3u9l_A 80 QIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMR------------------RQKHGLL 141 (324)
T ss_dssp HHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEE
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEE
Confidence 999999999999999998643 36678999999999999999999999999998 4467999
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--CCc-hh
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYD-SW 368 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--~~~-~~ 368 (429)
|++||.++..+. .++...|++||+|+++|+++++.|++++||+||+|+||++.|++..... ... ..
T Consensus 142 V~isS~~~~~~~-----------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 210 (324)
T 3u9l_A 142 IWISSSSSAGGT-----------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHA 210 (324)
T ss_dssp EEECCGGGTSCC-----------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHH
T ss_pred EEEecchhccCC-----------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHH
Confidence 999999887543 1456789999999999999999999999999999999999987643211 100 10
Q ss_pred HH------------HHHHhHHhh--hccCCHHHHHHHHHHHhcCC
Q psy12836 369 LS------------TVVLKPLVW--LFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 369 ~~------------~~~~~~~~~--~~~~~peevA~~iv~l~~~~ 399 (429)
.. ..+...... ....+|+++|++++.++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~ 255 (324)
T 3u9l_A 211 RQAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTA 255 (324)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSC
T ss_pred HHHhhccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCC
Confidence 00 001111111 11268999999999999766
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=322.18 Aligned_cols=234 Identities=20% Similarity=0.224 Sum_probs=183.1
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc---------ChhHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACR---------DLDKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R---------~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
....+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++..... .+ .+|++|.
T Consensus 12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~--~~---~~D~~d~ 86 (613)
T 3oml_A 12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG--EA---VADYNSV 86 (613)
T ss_dssp ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTC--CE---EECCCCG
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCC--eE---EEEeCCH
Confidence 4467899999999999999999999999999999999988 77777777777765443 22 4799999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
++++++++++.+++|+||+||||||+.... .+.+.++|+.++++|+.|+++++++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~----------------- 149 (613)
T 3oml_A 87 IDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMK----------------- 149 (613)
T ss_dssp GGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999987543 5678999999999999999999999999998
Q ss_pred ccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC
Q psy12836 284 QESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363 (429)
Q Consensus 284 ~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~ 363 (429)
+++.|+||++||.++..+. ++..+|++||+|+.+|+++|+.|++++||+||+|+||.+ |+|.....
T Consensus 150 -~~~~g~IV~isS~a~~~~~------------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~ 215 (613)
T 3oml_A 150 -KQNYGRIIMTSSNSGIYGN------------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGIL 215 (613)
T ss_dssp -TTTCEEEEEECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC
T ss_pred -HcCCCEEEEECCHHHcCCC------------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhcc
Confidence 5677999999999998875 568899999999999999999999999999999999975 66655432
Q ss_pred CCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
. +. .....+|+|+|++++||+++. .++||++|.+|||+...
T Consensus 216 ~--~~----------~~~~~~pedvA~~v~~L~s~~--~~~tG~~i~vdGG~~~~ 256 (613)
T 3oml_A 216 P--DI----------LFNELKPKLIAPVVAYLCHES--CEDNGSYIESAAGWATK 256 (613)
T ss_dssp C--HH----------HHTTCCGGGTHHHHHHTTSTT--CCCCSCEEEEETTEEEE
T ss_pred c--hh----------hhhcCCHHHHHHHHHHhcCCC--cCCCceEEEECCCeEEE
Confidence 1 11 123458999999999999765 78999999999997654
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=279.17 Aligned_cols=232 Identities=22% Similarity=0.260 Sum_probs=191.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|++|||||++|||+++|++|+++|++|++++|+.+ . ..+.++++|++|+++++++++++ +++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARA-QEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHH-HHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHH-HhhCC
Confidence 689999999999999999999999999999999865 1 13467899999999999999999 88899
Q ss_pred eeEEEEccccCCCC--CC----CCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 222 INVLINNAGVSGCR--KM----LTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~----~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+|++|||||..... .. .+.+++++.+++|+.+++++++.+.+.|.+.... .....++||++|
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~iv~~s 134 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPD------------AEGQRGVIVNTA 134 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCC------------TTSCSEEEEEEC
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------------CCCCCeEEEEeC
Confidence 99999999986533 22 2345999999999999999999999999731000 000135999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++...|++||++++.+++.++.|++++||+||+|+||++.|++..... +.....+..
T Consensus 135 S~~~~~~~------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~~~ 199 (242)
T 1uay_A 135 SVAAFEGQ------------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP---EKAKASLAA 199 (242)
T ss_dssp CTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC---HHHHHHHHT
T ss_pred ChhhccCC------------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccc---hhHHHHHHh
Confidence 99887664 567899999999999999999999999999999999999999876543 222233334
Q ss_pred HHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+. +++.+|+|+|+++++++++ .+++|+.|.++||....
T Consensus 200 ~~~~~~~~~~~~dva~~~~~l~~~---~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 200 QVPFPPRLGRPEEYAALVLHILEN---PMLNGEVVRLDGALRMA 240 (242)
T ss_dssp TCCSSCSCCCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCCC
T ss_pred hCCCcccCCCHHHHHHHHHHHhcC---CCCCCcEEEEcCCeecC
Confidence 4455 6788999999999999976 57899999999998654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=278.41 Aligned_cols=240 Identities=26% Similarity=0.290 Sum_probs=186.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|++|++|||||++|||+++|++|+++| ++|++++|+.+++++..+ + .+.++.++.+|++|.++++++++++.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~-~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS-I----KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT-C----CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh-c----cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999 999999999887654422 1 234688999999999999999999999
Q ss_pred hCC--CeeEEEEccccCC-C--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 218 ENK--KINVLINNAGVSG-C--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 218 ~~g--~iD~lI~nAG~~~-~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
++| ++|+||||||... . ..+.+.+++++.+++|+.++++++++++|.|.+........ ......++||
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv 148 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGD-------QLSVSRAAVI 148 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSS-------CCCTTTCEEE
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCC-------cccCCCcEEE
Confidence 998 9999999999865 2 25568899999999999999999999999997431100000 0001168999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||..+..+.... ....++..+|++||++++++++.++.|++++||+|++|+||+++|++.+..
T Consensus 149 ~isS~~~~~~~~~~-----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---------- 213 (250)
T 1yo6_A 149 TISSGLGSITDNTS-----GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN---------- 213 (250)
T ss_dssp EECCGGGCSTTCCS-----TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------
T ss_pred EeccCccccCCccc-----ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCCC----------
Confidence 99999887653210 011145778999999999999999999999999999999999999986431
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+|+|+|+.++++++++ ..+++|+++.+||+.
T Consensus 214 --------~~~~~~~~a~~~~~~~~~~-~~~~~G~~~~~~g~~ 247 (250)
T 1yo6_A 214 --------AALTVEQSTAELISSFNKL-DNSHNGRFFMRNLKP 247 (250)
T ss_dssp -------------HHHHHHHHHHHTTC-CGGGTTCEEETTEEE
T ss_pred --------CCCCHHHHHHHHHHHHhcc-cccCCCeEEEECCcC
Confidence 2458999999999999766 467899999999875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=281.70 Aligned_cols=220 Identities=27% Similarity=0.335 Sum_probs=190.4
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .++.++.+|++|.++++++++++
T Consensus 25 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 25 RRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999988888877776543 36889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.++++|+||||||+.... .+.+.+++++.+++|+.|++++++.++|.|. +++.++||+
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~~~iv~ 164 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMT------------------KNNHGHIVT 164 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------hcCCCEEEE
Confidence 99999999999999986543 4457789999999999999999999999998 456799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc---CCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE---GTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~---~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
+||.++..+. ++..+|++||++++++++.++.|++ +.||+||+|+||+++|++.+..
T Consensus 165 isS~~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------- 224 (272)
T 1yb1_A 165 VASAAGHVSV------------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------- 224 (272)
T ss_dssp ECCCC-CCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT--------
T ss_pred EechhhcCCC------------CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc--------
Confidence 9999887653 4567899999999999999999997 6799999999999999985421
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCC
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~ 400 (429)
..+..+..+|+|+|+.+++++.++.
T Consensus 225 -----~~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 225 -----STSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp -----HHHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred -----cccccCCCCHHHHHHHHHHHHHcCC
Confidence 1123567899999999999997653
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=286.72 Aligned_cols=216 Identities=21% Similarity=0.199 Sum_probs=157.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||++|||||++|||+++|++|++ |++|++++|+.+++++..+ + ..+.++.+|+++.++ .+.+.+..+.
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-~------~~~~~~~~D~~~~~~-~~~~~~~~~~ 72 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-I------EGVEPIESDIVKEVL-EEGGVDKLKN 72 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-S------TTEEEEECCHHHHHH-TSSSCGGGTT
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-h------cCCcceecccchHHH-HHHHHHHHHh
Confidence 57899999999999999999999998 9999999999887765543 1 257888999999877 5555556677
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||+.... .+.+.++|++++++|+.|++++++.++|.|++ + .|+||++||
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~------------------~-~g~iv~isS 133 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRA------------------A-SGCVIYINS 133 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCEEEEEC-
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh------------------c-CCeEEEEcC
Confidence 89999999999987543 45678999999999999999999999999973 2 389999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||++.|++.+..... ....
T Consensus 134 ~~~~~~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-------~~~~ 194 (245)
T 3e9n_A 134 GAGNGPH------------PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDS-------QGTN 194 (245)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------
T ss_pred cccccCC------------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhh-------hhcc
Confidence 9987764 56889999999999999999999999999999999999999997764321 1122
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~ 401 (429)
.+..++.+|+|+|++++|+++++..
T Consensus 195 ~~~~~~~~p~dvA~~i~~l~~~~~~ 219 (245)
T 3e9n_A 195 FRPEIYIEPKEIANAIRFVIDAGET 219 (245)
T ss_dssp -CCGGGSCHHHHHHHHHHHHTSCTT
T ss_pred cccccCCCHHHHHHHHHHHHcCCCc
Confidence 3345678999999999999987653
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=293.11 Aligned_cols=237 Identities=21% Similarity=0.245 Sum_probs=182.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh----cCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE----SKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~----~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+||++|||||++|||+++|++|+++|++|++++|+.+++++..+.+... ..+.++.++++|++|.++++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~- 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV- 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH-
Confidence 4789999999999999999999999999999888765444333333221 12246889999999999999999988
Q ss_pred HhCCCeeEEEEccccCCC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.++++|+||||||+... ..+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++
T Consensus 80 -~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~------------------~~~~g~IV~i 140 (327)
T 1jtv_A 80 -TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMK------------------RRGSGRVLVT 140 (327)
T ss_dssp -TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred -hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH------------------hcCCCEEEEE
Confidence 35899999999998643 25678899999999999999999999999997 3457999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc--------
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD-------- 366 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~-------- 366 (429)
||.++..+. ++..+|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.+......
T Consensus 141 sS~~~~~~~------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 208 (327)
T 1jtv_A 141 GSVGGLMGL------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTD 208 (327)
T ss_dssp EEGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSC
T ss_pred CCcccccCC------------CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCC
Confidence 999887664 567899999999999999999999999999999999999999976542110
Q ss_pred hhHHH---HHHh--HHhhhcc-CCHHHHHHHHHHHhcCC--CcccCCceEE
Q psy12836 367 SWLST---VVLK--PLVWLFI-KSPRQGAQTIVYASLDP--SLENVSGKYF 409 (429)
Q Consensus 367 ~~~~~---~~~~--~~~~~~~-~~peevA~~iv~l~~~~--~~~~vtG~~i 409 (429)
+.... .... ..+..+. .+|+|+|++++++++++ ...+++|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~l~~~~~~~~~~~tg~~~ 259 (327)
T 1jtv_A 209 IHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERF 259 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCSTT
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHcCCCCCeEEEeCchH
Confidence 00000 0111 1122333 59999999999999764 3567788654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=280.54 Aligned_cols=234 Identities=29% Similarity=0.413 Sum_probs=191.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAK-RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++|++|||||++|||+++|++|++ +|++|++++|+.+++++..+++.... .++.++.+|++|.++++++++++.++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 99999999999988888877776543 36788899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC-CCCC-HHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR-KMLT-EEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~-~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||..... ...+ .++++.++++|+.|++++++.+++.|+ + .|+||++||
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~--~g~iv~~sS 139 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK------------------P--QGRVVNVSS 139 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEE------------------E--EEEEEEECC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhC------------------C--CCEEEEECC
Confidence 99999999999986543 2233 588999999999999999999998764 2 379999999
Q ss_pred cccccCCCCc----------ccCCC-------------------CCCCCCcchhHHHHHHHHHHHHHHHHHhcC----CC
Q psy12836 297 VAHKRGTINK----------EDLNS-------------------ENSYDPTQAYNQSKLANVLFTRELAKRLEG----TG 343 (429)
Q Consensus 297 ~~~~~~~~~~----------~~l~~-------------------~~~~~~~~~Y~aSKaal~~l~~~la~el~~----~g 343 (429)
.++..+.... ..+.+ .....+..+|++||++++.|++.++.++++ .|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~ 219 (276)
T 1wma_A 140 IMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDK 219 (276)
T ss_dssp HHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred hhhhcccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 8876431000 00000 000112378999999999999999999987 79
Q ss_pred eEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCC-cccCCceEEecCc
Q psy12836 344 ITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPS-LENVSGKYFACYD 413 (429)
Q Consensus 344 IrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~-~~~vtG~~i~~~g 413 (429)
|+||+|+||+|.|++.+. ....+|+|+|+.++++++++. .++++|++|..++
T Consensus 220 i~v~~v~PG~v~t~~~~~------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~~ 272 (276)
T 1wma_A 220 ILLNACCPGWVRTDMAGP------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 272 (276)
T ss_dssp CEEEEEECCSBCSTTTCT------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETTE
T ss_pred eEEEEecCCccccCcCCc------------------cccCChhHhhhhHhhhhcCcccccccCceEeccCc
Confidence 999999999999998653 135699999999999998664 4689999998544
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=278.77 Aligned_cols=244 Identities=20% Similarity=0.213 Sum_probs=194.0
Q ss_pred cCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcC---CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHH
Q psy12836 134 YTEETSARGKIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 134 ~~~~~~l~gK~vLITGassGIG~aiA~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
.+...++++|++|||||++|||+++|++|+++| ++|++++|+.++.+.. +++.... .++.++.+|+++.+++++
T Consensus 13 ~~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~--~~~~~~~~Dl~~~~~v~~ 89 (267)
T 1sny_A 13 GLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNH--SNIHILEIDLRNFDAYDK 89 (267)
T ss_dssp -------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHC--TTEEEEECCTTCGGGHHH
T ss_pred cccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccC--CceEEEEecCCChHHHHH
Confidence 344678899999999999999999999999999 9999999998766543 3343332 368899999999999999
Q ss_pred HHHHHHHhCC--CeeEEEEccccCC---CCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 211 FAEEVKKENK--KINVLINNAGVSG---CRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 211 ~~~~i~~~~g--~iD~lI~nAG~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
+++++.+.++ ++|+||||||+.. +....+.+++++.+++|+.+++++++.++|.|.+........ ...
T Consensus 90 ~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~-------~~~ 162 (267)
T 1sny_A 90 LVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQ-------PMG 162 (267)
T ss_dssp HHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTS-------CSS
T ss_pred HHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccc-------ccc
Confidence 9999999988 8999999999865 225568899999999999999999999999997431100000 000
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~ 365 (429)
...++||++||.++..+.. ..++..+|++||+++++|++.++.|++++||+|++|+||+|+|+|....
T Consensus 163 ~~~~~iv~isS~~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--- 230 (267)
T 1sny_A 163 VGRAAIINMSSILGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSS--- 230 (267)
T ss_dssp TTTCEEEEECCGGGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCTT---
T ss_pred CCCceEEEEecccccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCCC---
Confidence 0158999999998876531 1135678999999999999999999999999999999999999986431
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+|+++|+.+++++.++ ...++|+++.+||+.
T Consensus 231 ---------------~~~~~~~~a~~~~~~~~~~-~~~~~G~~~~~~g~~ 264 (267)
T 1sny_A 231 ---------------APLDVPTSTGQIVQTISKL-GEKQNGGFVNYDGTP 264 (267)
T ss_dssp ---------------CSBCHHHHHHHHHHHHHHC-CGGGTTCEECTTSCB
T ss_pred ---------------CCCCHHHHHHHHHHHHHhc-CcCCCCcEEccCCcC
Confidence 2458999999999999765 467899999998874
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=286.98 Aligned_cols=232 Identities=19% Similarity=0.176 Sum_probs=173.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||++|||+++|++|+++|++|++++|+.++++. .+++|+++.++++++++++ ++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~~~~Dl~~~~~v~~~~~~~---~~~i 63 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------DLSTAEGRKQAIADVLAKC---SKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHTTC---TTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------ccccCCCCHHHHHHHHHHh---CCCC
Confidence 789999999999999999999999999999998754321 1578999999998888743 3899
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||+.... +.+++++++|+.|++++++.++|.|+ +++.|+||++||.++...
T Consensus 64 d~lv~~Ag~~~~~-----~~~~~~~~~N~~g~~~l~~~~~~~~~------------------~~~~g~iv~isS~~~~~~ 120 (257)
T 1fjh_A 64 DGLVLCAGLGPQT-----KVLGNVVSVNYFGATELMDAFLPALK------------------KGHQPAAVVISSVASAHL 120 (257)
T ss_dssp SEEEECCCCCTTC-----SSHHHHHHHHTHHHHHHHHHHHHHHH------------------TSSSCEEEEECCGGGGSS
T ss_pred CEEEECCCCCCCc-----ccHHHHHHHhhHHHHHHHHHHHHHHh------------------hcCCcEEEEECChhhhcc
Confidence 9999999986421 23899999999999999999999998 556799999999988732
Q ss_pred CCCcccCC----------------CCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc
Q psy12836 303 TINKEDLN----------------SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366 (429)
Q Consensus 303 ~~~~~~l~----------------~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~ 366 (429)
........ .....++..+|++||+|++++++.++.|++++||+||+|+||++.|++.+....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-- 198 (257)
T 1fjh_A 121 AFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-- 198 (257)
T ss_dssp CGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-------------
T ss_pred ccccchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc--
Confidence 11000000 001123567899999999999999999999999999999999999999765411
Q ss_pred hhHHHHHHh--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 367 SWLSTVVLK--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 367 ~~~~~~~~~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
......... ..+.+++.+|+|+|++++++++++ ..+++|++|.+|||...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~-~~~~tG~~~~vdgG~~~~ 251 (257)
T 1fjh_A 199 DPRYGESIAKFVPPMGRRAEPSEMASVIAFLMSPA-ASYVHGAQIVIDGGIDAV 251 (257)
T ss_dssp ----------CCCSTTSCCCTHHHHHHHHHHTSGG-GTTCCSCEEEESTTHHHH
T ss_pred chhHHHHHHhcccccCCCCCHHHHHHHHHHHhCch-hcCCcCCEEEECCCcccc
Confidence 011111111 335567899999999999999654 678999999999997653
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=292.13 Aligned_cols=241 Identities=15% Similarity=0.026 Sum_probs=192.0
Q ss_pred CCCCEEEEEcCCCcHHHH--HHHHHHHcCCEEEEEEcChhH------------HHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 140 ARGKIVIVTGANTGIGKA--IARELAKRKAKVIMACRDLDK------------CEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 140 l~gK~vLITGassGIG~a--iA~~La~~G~~Vil~~R~~~~------------~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
..||+||||||++|||++ +|+.|+++|++|++++|+... .+...+.+... +.++..++||++|.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence 689999999999999999 999999999999999997543 22333333322 34688899999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccC---------------CCC---------------------CCCCHHHHHhhhcc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVS---------------GCR---------------------KMLTEEKIELQLGV 249 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~---------------~~~---------------------~~~~~~~~~~~~~v 249 (429)
++++++++++.+++|+||+||||||.. .+. .+.+.++|+.++++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999999999999999999974 111 24588999999999
Q ss_pred hhHHHH-HHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCc--chhHHHHH
Q psy12836 250 NHMGHF-LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT--QAYNQSKL 326 (429)
Q Consensus 250 N~~g~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~--~~Y~aSKa 326 (429)
|..+.+ .+++.+.+.+. ....|+||++||.++..+. +.+ .+|++||+
T Consensus 216 n~~~~~~~~~~~l~~~~~------------------~~~gg~IV~iSSi~~~~~~------------p~~~~~aY~ASKa 265 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDC------------------FSDKATTIAYSYIGSPRTY------------KIYREGTIGIAKK 265 (418)
T ss_dssp HSSHHHHHHHHHHHHTTC------------------EEEEEEEEEEECCCCGGGT------------TTTTTSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh------------------hcCCcEEEEEeCchhcCCC------------CccccHHHHHHHH
Confidence 999988 67777665432 2245899999999887764 445 89999999
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCC
Q psy12836 327 ANVLFTRELAKRLEG-TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVS 405 (429)
Q Consensus 327 al~~l~~~la~el~~-~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vt 405 (429)
|+++|+++||.|+++ +|||||+|+||+|.|++....+.. +.....+.. ++++.++||++++.+.||+++. ..+
T Consensus 266 AL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T~~s~~ip~~-p~y~~~~~~--~mk~~G~~E~v~e~~~~L~sd~---~~~ 339 (418)
T 4eue_A 266 DLEDKAKLINEKLNRVIGGRAFVSVNKALVTKASAYIPTF-PLYAAILYK--VMKEKNIHENCIMQIERMFSEK---IYS 339 (418)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECCCCCCHHHHTSTTH-HHHHHHHHH--HHHHTTCCCCHHHHHHHHHHHT---TSS
T ss_pred HHHHHHHHHHHHhCCccCeEEEEEECCcCcChhhhcCCCC-cHHHHHHHH--HHhhcCChHHHHHHHHHHhhcc---ccC
Confidence 999999999999999 999999999999999998776531 111111222 3567899999999999999763 568
Q ss_pred ceEEecCcccccc
Q psy12836 406 GKYFACYDRYEAR 418 (429)
Q Consensus 406 G~~i~~~gg~~~~ 418 (429)
|+.+.+|++...+
T Consensus 340 g~~~~~D~~~~~r 352 (418)
T 4eue_A 340 NEKIQFDDKGRLR 352 (418)
T ss_dssp SSCCCCCTTSCEE
T ss_pred CCccccCCCceee
Confidence 9988888765443
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=267.70 Aligned_cols=220 Identities=22% Similarity=0.234 Sum_probs=186.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||+++||||+||||+++|++|+++|++|++++|+.+++++..+++.... ..++.++.+|++|.++++++++++.
T Consensus 23 ~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999888877775543 2368899999999999999999999
Q ss_pred HhCCCeeEEEEc-cccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINN-AGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~n-AG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|+|||| ||..... .+.+.+++++++++|+.|++++++.++|.|.+ ..|+||++
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-------------------~~g~iv~i 162 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ-------------------SNGSIVVV 162 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HTCEEEEE
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------CCCEEEEE
Confidence 999999999999 5765332 44578999999999999999999999999862 24899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--cCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el--~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
||.++..+. ++..+|++||+++++++++++.|+ ...||+|++|+||+++|++...... .
T Consensus 163 sS~~~~~~~------------~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~--~----- 223 (286)
T 1xu9_A 163 SSLAGKVAY------------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVS--G----- 223 (286)
T ss_dssp EEGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSC--G-----
T ss_pred CCcccccCC------------CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhcc--c-----
Confidence 999887654 567899999999999999999999 6789999999999999998643110 0
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.......+|+++|+.++.++..+
T Consensus 224 ----~~~~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 224 ----IVHMQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp ----GGGGGCBCHHHHHHHHHHHHHTT
T ss_pred ----cccCCCCCHHHHHHHHHHHHhcC
Confidence 01123569999999999998654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=313.51 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=195.7
Q ss_pred CCCCCCCEEEEEcCCCc-HHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassG-IG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~ 212 (429)
.++++||++|||||++| ||+++|+.|+++|++|+++ +|+.+++++..+++..... +.++.++.||++|.+++++++
T Consensus 670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 56789999999999998 9999999999999999998 6888888777777644332 357889999999999999999
Q ss_pred HHHHHh-----CC-CeeEEEEccccCCCC---CCCC--HHHHHhhhcchhHHHHHHHHHH--HHHHHhhhccccccchhh
Q psy12836 213 EEVKKE-----NK-KINVLINNAGVSGCR---KMLT--EEKIELQLGVNHMGHFLLTMLL--LDKLQANLSRYSLCNLIW 279 (429)
Q Consensus 213 ~~i~~~-----~g-~iD~lI~nAG~~~~~---~~~~--~~~~~~~~~vN~~g~~~l~~~~--~~~l~~~~~~~~~~~~~~ 279 (429)
+++.++ +| +||+||||||+.... .+.+ .++|+++|++|+.+++++++.+ +|.|.
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~------------- 816 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIE------------- 816 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCC-------------
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------------
Confidence 999988 66 999999999986533 4556 8999999999999999999987 55554
Q ss_pred hhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHH-HHHHHHHhcCCCeEEEEEeCCCcc-CC
Q psy12836 280 YYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLF-TRELAKRLEGTGITVNAVHPGIVN-TD 357 (429)
Q Consensus 280 ~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l-~~~la~el~~~gIrVn~V~PG~v~-T~ 357 (429)
+++.|+||++||.++..+ +..+|++||+|+++| ++.++.++++. |+||+|+||+|+ |+
T Consensus 817 -----~~~~G~IVnISS~ag~~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~-IrVNaV~PG~V~tT~ 876 (1887)
T 2uv8_A 817 -----TRPAQVILPMSPNHGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTG 876 (1887)
T ss_dssp -----SCCEEEEEEECSCTTCSS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTT-EEEEEEEECCEECC-
T ss_pred -----hCCCCEEEEEcChHhccC--------------CCchHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEEeccccccc
Confidence 445689999999988654 356899999999999 99999999988 999999999999 88
Q ss_pred cccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec--Cccccccc
Q psy12836 358 ILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC--YDRYEARV 419 (429)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~--~gg~~~~~ 419 (429)
|...... . .......+. +..+|+|+|..++||+++....+++|+.+.+ |||.....
T Consensus 877 m~~~~~~----~-~~~~~~~pl-r~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~~~~~ 934 (1887)
T 2uv8_A 877 LMSANNI----I-AEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVP 934 (1887)
T ss_dssp ----CCT----T-HHHHHTTSC-CCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCSTTTSS
T ss_pred ccccchh----H-HHHHHhcCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCeeccc
Confidence 8754211 1 112222332 5569999999999999664357899999876 48876543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-33 Score=308.93 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=197.6
Q ss_pred CCCCCCCCEEEEEcCCCc-HHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 136 ~~~~l~gK~vLITGassG-IG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~ 211 (429)
..++++||++|||||++| ||+++|+.|+++|++|+++ +|+.+++++..+++..... +.++.+++||++|.++++++
T Consensus 470 ~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaL 549 (1688)
T 2pff_A 470 XXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL 549 (1688)
T ss_dssp SCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred cccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence 356789999999999998 9999999999999999998 6777777766666644322 35788999999999999999
Q ss_pred HHHHHHh-----CC-CeeEEEEccccCCCC---CCCC--HHHHHhhhcchhHHHHHHHHHH--HHHHHhhhccccccchh
Q psy12836 212 AEEVKKE-----NK-KINVLINNAGVSGCR---KMLT--EEKIELQLGVNHMGHFLLTMLL--LDKLQANLSRYSLCNLI 278 (429)
Q Consensus 212 ~~~i~~~-----~g-~iD~lI~nAG~~~~~---~~~~--~~~~~~~~~vN~~g~~~l~~~~--~~~l~~~~~~~~~~~~~ 278 (429)
++++.+. +| +||+||||||+.... .+.+ .++|++++++|+.+++.+++.+ +|.|.
T Consensus 550 Ve~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~------------ 617 (1688)
T 2pff_A 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIE------------ 617 (1688)
T ss_dssp HHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCT------------
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHH------------
Confidence 9999988 77 999999999986433 4556 8999999999999999999998 66665
Q ss_pred hhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHH-HHHHHHHhcCCCeEEEEEeCCCcc-C
Q psy12836 279 WYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLF-TRELAKRLEGTGITVNAVHPGIVN-T 356 (429)
Q Consensus 279 ~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l-~~~la~el~~~gIrVn~V~PG~v~-T 356 (429)
+++.|+||++||.++..+ +..+|++||+|+++| ++.++.++++. |+||+|+||+|+ |
T Consensus 618 ------krggGrIVnISSiAG~~G--------------g~saYaASKAAL~aLttrsLAeEla~~-IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 618 ------TRPAQVILPMSPNHGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGT 676 (1688)
T ss_dssp ------TSCEEECCCCCSCTTTSS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTT-EECCCCCCCCCCCC
T ss_pred ------hCCCCEEEEEEChHhccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEECcCcCC
Confidence 445689999999888654 356899999999999 88889989887 999999999999 7
Q ss_pred CcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecC--cccccc
Q psy12836 357 DILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY--DRYEAR 418 (429)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~--gg~~~~ 418 (429)
+|......... .....+. +..+|+|+|++++||+++....+++|+.+.+| ||....
T Consensus 677 ~M~~~~e~~~~-----~l~~ipl-R~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~~~~ 734 (1688)
T 2pff_A 677 GLMSANNIIAE-----GIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFV 734 (1688)
T ss_dssp SSSCTTTTCST-----TTSSSSC-CCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSGGGS
T ss_pred cccCCchHHHH-----HHHhCCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCeeec
Confidence 88654211001 1112222 45699999999999997654678999998765 886543
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=303.28 Aligned_cols=243 Identities=14% Similarity=0.101 Sum_probs=194.0
Q ss_pred CCCCCCCEEEEEcCCCc-HHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassG-IG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~ 212 (429)
.++++||++|||||++| ||+++|+.|+++|++|++++ |+.+++++..+++..... +.++.++.||++|.+++++++
T Consensus 647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 55789999999999999 99999999999999999995 777777666666643322 357889999999999999999
Q ss_pred HHHHHh---CC-CeeEEEEccccCCCC---CCCC--HHHHHhhhcchhHHHHHHHHH--HHHHHHhhhccccccchhhhh
Q psy12836 213 EEVKKE---NK-KINVLINNAGVSGCR---KMLT--EEKIELQLGVNHMGHFLLTML--LLDKLQANLSRYSLCNLIWYY 281 (429)
Q Consensus 213 ~~i~~~---~g-~iD~lI~nAG~~~~~---~~~~--~~~~~~~~~vN~~g~~~l~~~--~~~~l~~~~~~~~~~~~~~~~ 281 (429)
+++.++ +| +||+||||||+.... .+.+ .++|+++|++|+.|++++++. +++.|.
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~--------------- 791 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYE--------------- 791 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC---------------
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------
Confidence 999988 89 999999999986432 5566 799999999999999999987 556654
Q ss_pred hcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhcCCCeEEEEEeCCCcc-CCcc
Q psy12836 282 VFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAK-RLEGTGITVNAVHPGIVN-TDIL 359 (429)
Q Consensus 282 ~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~-el~~~gIrVn~V~PG~v~-T~~~ 359 (429)
+++.|+||++||.++..+ +..+|++||+|+++|++.++. ++++. |+||+|+||+++ |+|.
T Consensus 792 ---~~~~G~IVnISS~ag~~g--------------g~~aYaASKAAL~aLt~~laAeEla~~-IrVNaVaPG~V~gT~m~ 853 (1878)
T 2uv9_A 792 ---TRPAQVILPLSPNHGTFG--------------NDGLYSESKLALETLFNRWYSESWGNY-LTICGAVIGWTRGTGLM 853 (1878)
T ss_dssp ---SCCEEECCEECSCSSSSS--------------CCSSHHHHHHHHTTHHHHHHHSTTTTT-EEEEEEEECCBCCTTSC
T ss_pred ---hCCCCEEEEEcchhhccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecceecCccc
Confidence 445689999999988764 256899999999999886654 57776 999999999999 9986
Q ss_pred cCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec--Ccccccc
Q psy12836 360 RHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC--YDRYEAR 418 (429)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~--~gg~~~~ 418 (429)
... . .........+. +..+|+|+|.+++||+++....++||+.+.+ |||....
T Consensus 854 ~~~----~-~~~~~~~~~pl-r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~ 908 (1878)
T 2uv9_A 854 SAN----N-LVAEGVEKLGV-RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFI 908 (1878)
T ss_dssp SHH----H-HTHHHHHTTTC-CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGC
T ss_pred ccc----h-hhHHHHHhcCC-CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCcccc
Confidence 531 1 11112222332 4569999999999999664227899998876 5886543
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=239.76 Aligned_cols=198 Identities=19% Similarity=0.279 Sum_probs=167.1
Q ss_pred CC-EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GK-IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK-~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
|| +++||||+||||++++++|+ +|++|++++|+.+ .+.+|++++++++++++++ +
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~----~ 57 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQV----G 57 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHH----C
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHh----C
Confidence 45 79999999999999999999 9999999999864 3679999999999998875 7
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||..... .+.+.+++++.+++|+.+++++++.+.+.|. + +++||++||..
T Consensus 58 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~--~~~iv~~sS~~ 117 (202)
T 3d7l_A 58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLN------------------D--KGSFTLTTGIM 117 (202)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEE------------------E--EEEEEEECCGG
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhc------------------c--CCEEEEEcchh
Confidence 899999999976432 5568899999999999999999999987764 2 38999999988
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
+..+. ++..+|++||++++.+++.++.|+ ++||++++|+||++.|++... ....+
T Consensus 118 ~~~~~------------~~~~~Y~~sK~~~~~~~~~~~~e~-~~gi~v~~v~pg~v~~~~~~~------------~~~~~ 172 (202)
T 3d7l_A 118 MEDPI------------VQGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDKL------------EPFFE 172 (202)
T ss_dssp GTSCC------------TTCHHHHHHHHHHHHHHHHHTTSC-STTCEEEEEEECCBGGGHHHH------------GGGST
T ss_pred hcCCC------------CccHHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEecCccCCchhhh------------hhhcc
Confidence 76553 567899999999999999999999 789999999999999987421 11122
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
.....+|+|+|+++++++. .+++|+.|++|
T Consensus 173 ~~~~~~~~dva~~~~~~~~----~~~~G~~~~vd 202 (202)
T 3d7l_A 173 GFLPVPAAKVARAFEKSVF----GAQTGESYQVY 202 (202)
T ss_dssp TCCCBCHHHHHHHHHHHHH----SCCCSCEEEEC
T ss_pred ccCCCCHHHHHHHHHHhhh----ccccCceEecC
Confidence 3456799999999998882 35789988875
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=236.69 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=164.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||+||||++++++|+++ +|++++|+.+++++..+++. . .++.+|++|++++++++++ ++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~------~-~~~~~D~~~~~~~~~~~~~----~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG------A-RALPADLADELEAKALLEE----AGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT------C-EECCCCTTSHHHHHHHHHH----HCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc------C-cEEEeeCCCHHHHHHHHHh----cCCC
Confidence 68999999999999999999999 99999999988777666552 1 6788999999999999887 5899
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|+||||||..... .+.+.+++++.+++|+.+++++++.+ . +.+.++||++||.++.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~------------------~~~~~~iv~~sS~~~~ 125 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----R------------------FQKGARAVFFGAYPRY 125 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----C------------------EEEEEEEEEECCCHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----H------------------hcCCcEEEEEcChhhc
Confidence 9999999986433 45678899999999999999999887 1 3356899999999887
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
.+. ++...|++||++++.+++.++.|++++||++++|+||++.|++..... .+..
T Consensus 126 ~~~------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~~~-------------~~~~ 180 (207)
T 2yut_A 126 VQV------------PGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLG-------------GPPK 180 (207)
T ss_dssp HSS------------TTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGGGT-------------SCCT
T ss_pred cCC------------CCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccccC-------------CCCC
Confidence 654 567899999999999999999999999999999999999999843211 1224
Q ss_pred ccCCHHHHHHHHHHHhcCCC
Q psy12836 381 FIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~ 400 (429)
++.+|+|+|+++++++.++.
T Consensus 181 ~~~~~~dva~~~~~~~~~~~ 200 (207)
T 2yut_A 181 GALSPEEAARKVLEGLFREP 200 (207)
T ss_dssp TCBCHHHHHHHHHHHHC--C
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 67899999999999997664
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=249.85 Aligned_cols=232 Identities=22% Similarity=0.223 Sum_probs=179.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|++|||||+||||++++++|+++|++|++++|+.++++. .+.+|+++.++++++++++ .+++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~---~~~~ 63 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRC---GGVL 63 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHH---TTCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHc---CCCc
Confidence 689999999999999999999999999999998754211 1578999999999988865 4789
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||.... .++++..+++|+.+++++++.+.+.|. +.+.++||++||.++..+
T Consensus 64 d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~~------------------~~~~~~iv~~sS~~~~~~ 120 (255)
T 2dkn_A 64 DGLVCCAGVGVT-----AANSGLVVAVNYFGVSALLDGLAEALS------------------RGQQPAAVIVGSIAATQP 120 (255)
T ss_dssp SEEEECCCCCTT-----SSCHHHHHHHHTHHHHHHHHHHHHHHH------------------TSSSCEEEEECCGGGGST
T ss_pred cEEEECCCCCCc-----chhHHHHHHHHhHHHHHHHHHHHHHhh------------------hcCCceEEEEeccccccc
Confidence 999999998642 234888999999999999999999997 556689999999888754
Q ss_pred CCCcccCCC--------------CCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 303 TINKEDLNS--------------ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 303 ~~~~~~l~~--------------~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
.....+..+ +...++...|++||++++.+++.++.++++.||++++|+||.+.|++...... ..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~-~~- 198 (255)
T 2dkn_A 121 GAAELPMVEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKA-DP- 198 (255)
T ss_dssp TGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHH-CT-
T ss_pred cccccchhhhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhccc-ch-
Confidence 311000000 00013567899999999999999999999899999999999999998654210 00
Q ss_pred HHHHHHhHH--hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPL--VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~--~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
......... +..++.+|+|+|++++++++++ ..+++|++|.++||...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~~~v~gg~~~~ 249 (255)
T 2dkn_A 199 RYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQ-ASFIHGSVLFVDGGMDAL 249 (255)
T ss_dssp TTHHHHHSCCCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTHHHH
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCC-cccceeeEEEecCCeEee
Confidence 111111111 4456889999999999999654 557899999999987654
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=260.04 Aligned_cols=215 Identities=17% Similarity=0.137 Sum_probs=176.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEE-EcCh-------------hHHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMA-CRDL-------------DKCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~-~R~~-------------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
.+|++|||||++|||+++|+.|+++|++ |+++ +|+. +++++..+++.... .++.++.||++|.
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLG--ATATVVTCDLTDA 327 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHT--CEEEEEECCTTSH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcC--CEEEEEECCCCCH
Confidence 6899999999999999999999999997 7777 8983 45566666665543 4799999999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVF 283 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (429)
++++++++++. ++++||+||||||+.... .+.+.++++.+|++|+.|++++.+.+.+.++
T Consensus 328 ~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~----------------- 389 (525)
T 3qp9_A 328 EAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAA----------------- 389 (525)
T ss_dssp HHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccc-----------------
Confidence 99999999998 789999999999987543 5678999999999999999999999999886
Q ss_pred ccCC-CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC
Q psy12836 284 QESA-PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 284 ~~~~-~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~ 362 (429)
+++ .++||++||.++..+. ++...|++||+++++| +.++...||++++|+||+++|+|....
T Consensus 390 -~~~~~~~iV~~SS~a~~~g~------------~g~~~YaaaKa~l~~l----A~~~~~~gi~v~sI~pG~~~tgm~~~~ 452 (525)
T 3qp9_A 390 -AGGRPPVLVLFSSVAAIWGG------------AGQGAYAAGTAFLDAL----AGQHRADGPTVTSVAWSPWEGSRVTEG 452 (525)
T ss_dssp ----CCCEEEEEEEGGGTTCC------------TTCHHHHHHHHHHHHH----HTSCCSSCCEEEEEEECCBTTSGGGSS
T ss_pred -cCCCCCEEEEECCHHHcCCC------------CCCHHHHHHHHHHHHH----HHHHHhCCCCEEEEECCccccccccch
Confidence 333 6899999999998876 6789999999999887 456778899999999999999997532
Q ss_pred CCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 363 SYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
. ....+.. . .....+|+++++.+.+++..+
T Consensus 453 ~-----~~~~~~~-~-g~~~l~pee~a~~l~~~l~~~ 482 (525)
T 3qp9_A 453 A-----TGERLRR-L-GLRPLAPATALTALDTALGHG 482 (525)
T ss_dssp H-----HHHHHHH-T-TBCCBCHHHHHHHHHHHHHHT
T ss_pred h-----hHHHHHh-c-CCCCCCHHHHHHHHHHHHhCC
Confidence 1 1111211 1 123579999999999999765
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=291.85 Aligned_cols=244 Identities=13% Similarity=0.067 Sum_probs=179.5
Q ss_pred CCCCCCCEEEEEcCCCc-HHHHHHHHHHHcCCEEEEEEcChhH-----HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDK-----CEKARKEVVLESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 137 ~~~l~gK~vLITGassG-IG~aiA~~La~~G~~Vil~~R~~~~-----~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
...++||++|||||++| ||+++|+.|+++|++|++++|+.+. ++++.+++... +.++..++||++|.+++++
T Consensus 2131 ~~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~--G~~~~~v~~Dvtd~~~v~~ 2208 (3089)
T 3zen_D 2131 XXXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF--DATLWVVPANMASYSDIDK 2208 (3089)
T ss_dssp TCCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHH
T ss_pred cccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc--CCeEEEEEecCCCHHHHHH
Confidence 34589999999999999 9999999999999999999998776 45555554332 3478889999999999999
Q ss_pred HHHHHHH----hCCCeeEEEEcccc----CC---CCCCCCHHHHHhh----hcchhHHHHHHHHHHHHHHHhhhcccccc
Q psy12836 211 FAEEVKK----ENKKINVLINNAGV----SG---CRKMLTEEKIELQ----LGVNHMGHFLLTMLLLDKLQANLSRYSLC 275 (429)
Q Consensus 211 ~~~~i~~----~~g~iD~lI~nAG~----~~---~~~~~~~~~~~~~----~~vN~~g~~~l~~~~~~~l~~~~~~~~~~ 275 (429)
+++++.+ ++|+||+||||||+ .. .....+.++|+.. +++|+.+++.+++.+.+.|.+...
T Consensus 2209 lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~----- 2283 (3089)
T 3zen_D 2209 LVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDI----- 2283 (3089)
T ss_dssp HHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999998 89999999999998 11 1222344555555 999999999999999999974210
Q ss_pred chhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHH--hcCCCeEEEEEeCCC
Q psy12836 276 NLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKR--LEGTGITVNAVHPGI 353 (429)
Q Consensus 276 ~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~e--l~~~gIrVn~V~PG~ 353 (429)
....+.|++.|+..+.. ++..+|++||+|+++|+++||.| +++ +|+||+|+||+
T Consensus 2284 ---------g~~~~ii~~~ss~~g~~--------------g~~~aYsASKaAl~~LtrslA~E~~~a~-~IrVn~v~PG~ 2339 (3089)
T 3zen_D 2284 ---------ASRLHVVLPGSPNRGMF--------------GGDGAYGEAKSALDALENRWSAEKSWAE-RVSLAHALIGW 2339 (3089)
T ss_dssp ---------CCCEEEEEEECSSTTSC--------------SSCSSHHHHGGGHHHHHHHHHHCSTTTT-TEEEEEEECCC
T ss_pred ---------CceeEEEEECCcccccC--------------CCchHHHHHHHHHHHHHHHHHhccccCC-CeEEEEEeecc
Confidence 00112333444433322 33568999999999999999999 664 69999999999
Q ss_pred cc-CCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEe--cCccccc
Q psy12836 354 VN-TDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA--CYDRYEA 417 (429)
Q Consensus 354 v~-T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~--~~gg~~~ 417 (429)
|+ |++...... ... .....+ .+..+|+|+|.+++||+++......+|+.+. .+||+..
T Consensus 2340 v~tT~l~~~~~~----~~~-~~~~~~-~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~ 2400 (3089)
T 3zen_D 2340 TKGTGLMGQNDA----IVS-AVEEAG-VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGD 2400 (3089)
T ss_dssp EECSTTTTTTTT----THH-HHGGGS-CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSS
T ss_pred cCCCcccccchh----HHH-HHHhcC-CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCc
Confidence 98 776543221 111 222233 2344999999999999976544444556444 4588754
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=241.88 Aligned_cols=211 Identities=18% Similarity=0.210 Sum_probs=167.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+|++|||||++|||+++|+.|+++|+ +|++++|+. +..++..+++... +.++.++.||++|.++++++++++.+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~i~~ 316 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADREALAALLAELPE 316 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999 899999974 3455566666543 34899999999999999999999877
Q ss_pred hCCCeeEEEEccccC-CC--CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVS-GC--RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
. ++||+||||||+. .. ..+.+.++++++|++|+.|++++.+.+. ....++||++
T Consensus 317 ~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~----------------------~~~~~~iV~~ 373 (496)
T 3mje_A 317 D-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTA----------------------DLDLDAFVLF 373 (496)
T ss_dssp T-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHT----------------------TSCCSEEEEE
T ss_pred h-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhh----------------------ccCCCEEEEE
Confidence 7 7999999999987 32 3677999999999999999999988765 3356899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++...|++||+++++|++.++ ..||++++|+||++.++.+..... ....+.
T Consensus 374 SS~a~~~g~------------~g~~~YaAaKa~ldala~~~~----~~Gi~v~sV~pG~w~~~gm~~~~~----~~~~l~ 433 (496)
T 3mje_A 374 SSGAAVWGS------------GGQPGYAAANAYLDALAEHRR----SLGLTASSVAWGTWGEVGMATDPE----VHDRLV 433 (496)
T ss_dssp EEHHHHTTC------------TTCHHHHHHHHHHHHHHHHHH----HTTCCCEEEEECEESSSCC----------CHHHH
T ss_pred eChHhcCCC------------CCcHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCcccCCccccChH----HHHHHH
Confidence 999998876 678899999999998877554 579999999999887665433211 111121
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.. .....+|+++++.+.+++..+
T Consensus 434 ~~--g~~~l~pe~~~~~l~~~l~~~ 456 (496)
T 3mje_A 434 RQ--GVLAMEPEHALGALDQMLEND 456 (496)
T ss_dssp HT--TEEEECHHHHHHHHHHHHHHT
T ss_pred hc--CCCCCCHHHHHHHHHHHHcCC
Confidence 11 113469999999999998655
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=248.00 Aligned_cols=214 Identities=19% Similarity=0.228 Sum_probs=171.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHH-HcCC-EEEEEEcC---hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELA-KRKA-KVIMACRD---LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La-~~G~-~Vil~~R~---~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+|++|||||++|||+++|+.|+ ++|+ +|++++|+ .+++++..++++.. +.++.+++||++|.++++++++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHH
Confidence 68999999999999999999999 7999 69999999 45566667777554 358999999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.+ +||+||||||+.... .+++.++|++.+++|+.|++++++++.|. -+||+
T Consensus 607 ~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~------------------------l~iV~ 661 (795)
T 3slk_A 607 PDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD------------------------VALVL 661 (795)
T ss_dssp CTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT------------------------SEEEE
T ss_pred HHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC------------------------CEEEE
Confidence 8876 999999999997543 67899999999999999999999887421 18999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. +++..|++||+ |+++|+++++++||++|+|+||++.|+++.... .+.....+
T Consensus 662 ~SS~ag~~g~------------~g~~~YaAaka----~~~alA~~~~~~Gi~v~sI~pG~v~t~g~~~~~--~~~~~~~~ 723 (795)
T 3slk_A 662 FSSVSGVLGS------------GGQGNYAAANS----FLDALAQQRQSRGLPTRSLAWGPWAEHGMASTL--REAEQDRL 723 (795)
T ss_dssp EEETHHHHTC------------SSCHHHHHHHH----HHHHHHHHHHHTTCCEEEEEECCCSCCCHHHHH--HHHHHHHH
T ss_pred EccHHhcCCC------------CCCHHHHHHHH----HHHHHHHHHHHcCCeEEEEECCeECcchhhccc--cHHHHHHH
Confidence 9999999886 67899999995 667777788889999999999999988653211 01111111
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~ 401 (429)
.... ....+++++...+..++..++.
T Consensus 724 -~~~g-~~~l~~~e~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 724 -ARSG-LLPISTEEGLSQFDAACGGAHT 749 (795)
T ss_dssp -HHTT-BCCCCHHHHHHHHHHHHTSSCS
T ss_pred -HhcC-CCCCCHHHHHHHHHHHHhCCCc
Confidence 1111 2356888888888888766543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=213.94 Aligned_cols=197 Identities=20% Similarity=0.164 Sum_probs=160.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|++|||||+||||++++++|+++|++|++++|+..+.. ...+.++.+|++|.++++++++
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~------ 63 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVA------ 63 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHT------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHc------
Confidence 35789999999999999999999999999999999875432 2368899999999999998886
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+||||||.. +.+.+++.+++|+.|++++++++. +.+.++||++||.++
T Consensus 64 -~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~~l~~a~~----------------------~~~~~~iv~~SS~~~ 114 (267)
T 3rft_A 64 -GCDGIVHLGGIS------VEKPFEQILQGNIIGLYNLYEAAR----------------------AHGQPRIVFASSNHT 114 (267)
T ss_dssp -TCSEEEECCSCC------SCCCHHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEEEEGGG
T ss_pred -CCCEEEECCCCc------CcCCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEcchHH
Confidence 579999999984 345688899999999999999884 335689999999888
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
.........+.+.....+...|++||++++.+++.++.++ |+++++|+||.+.+++..... .
T Consensus 115 ~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~---g~~~~~vr~~~v~~~~~~~~~---------------~ 176 (267)
T 3rft_A 115 IGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKF---GQETALVRIGSCTPEPNNYRM---------------L 176 (267)
T ss_dssp GTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECBCSSSCCSTTH---------------H
T ss_pred hCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCeEEEEEeecccCCCCCCCc---------------e
Confidence 7544344445555566778899999999999999999875 799999999999887543211 0
Q ss_pred hccCCHHHHHHHHHHHhcCCC
Q psy12836 380 LFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~ 400 (429)
..+.+++++++.+..++..++
T Consensus 177 ~~~~~~~d~a~~~~~~~~~~~ 197 (267)
T 3rft_A 177 STWFSHDDFVSLIEAVFRAPV 197 (267)
T ss_dssp HHBCCHHHHHHHHHHHHHCSC
T ss_pred eeEEcHHHHHHHHHHHHhCCC
Confidence 124689999999999986653
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=224.76 Aligned_cols=211 Identities=19% Similarity=0.205 Sum_probs=165.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChh---HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLD---KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~---~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
-.+|++|||||+||||+++|++|+++|+ +|++++|+.. ..++..+++... +.++.++.||++|.++++++++++
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHHHH
Confidence 3589999999999999999999999999 5999999875 345555556443 347889999999999999999998
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
+.++++|+||||||+.... ...+.++++..+++|+.|++++.+.+. ..+.++||+
T Consensus 302 -~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~----------------------~~~~~~~V~ 358 (486)
T 2fr1_A 302 -GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTR----------------------ELDLTAFVL 358 (486)
T ss_dssp -CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHT----------------------TSCCSEEEE
T ss_pred -HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhC----------------------cCCCCEEEE
Confidence 5678999999999987543 467899999999999999999988763 335689999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLSTV 372 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~~~ 372 (429)
+||.++..+. ++...|+++|+++++|++.++ ..|+++++|+||++.++ |..... ...
T Consensus 359 ~SS~a~~~g~------------~g~~~Yaaaka~l~~la~~~~----~~gi~v~~i~pG~~~~~gm~~~~~------~~~ 416 (486)
T 2fr1_A 359 FSSFASAFGA------------PGLGGYAPGNAYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAEGPV------ADR 416 (486)
T ss_dssp EEEHHHHTCC------------TTCTTTHHHHHHHHHHHHHHH----HTTCCCEEEEECCBC------------------
T ss_pred EcChHhcCCC------------CCCHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCeeCCCcccchhH------HHH
Confidence 9999988775 567899999999998876554 46999999999999876 432211 011
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
+.. ......+|+++++.+..++..+
T Consensus 417 ~~~--~g~~~i~~e~~a~~l~~~l~~~ 441 (486)
T 2fr1_A 417 FRR--HGVIEMPPETACRALQNALDRA 441 (486)
T ss_dssp CTT--TTEECBCHHHHHHHHHHHHHTT
T ss_pred HHh--cCCCCCCHHHHHHHHHHHHhCC
Confidence 110 1124579999999999999765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=207.06 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=155.4
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceE-EEEEeeCCCHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYV-LCRKCDLASQESIRAFAE 213 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v-~~~~~Dls~~~sv~~~~~ 213 (429)
++..+++||+++||||+||||++++++|+++|++|++++|+.+++++..+. .+ .++.+|++ +
T Consensus 14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--------~~~~~~~~Dl~---------~ 76 (236)
T 3e8x_A 14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--------GASDIVVANLE---------E 76 (236)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--------TCSEEEECCTT---------S
T ss_pred ccccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--------CCceEEEcccH---------H
Confidence 446788999999999999999999999999999999999999887654321 46 78899998 3
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+.+.++++|+||||||... .++++..+++|+.+++++++++. +.+.++||+
T Consensus 77 ~~~~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~~l~~a~~----------------------~~~~~~iv~ 128 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSGP------HTGADKTILIDLWGAIKTIQEAE----------------------KRGIKRFIM 128 (236)
T ss_dssp CCGGGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHHHHHHHHH----------------------HHTCCEEEE
T ss_pred HHHHHHcCCCEEEECCCCCC------CCCccccchhhHHHHHHHHHHHH----------------------HcCCCEEEE
Confidence 34455678999999999764 24678899999999999988874 224589999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||..+..+.. .+.+...|+++|++++.+.+ ..|+++++|+||.+.++..........
T Consensus 129 ~SS~~~~~~~~---------~~~~~~~Y~~sK~~~e~~~~-------~~gi~~~~lrpg~v~~~~~~~~~~~~~------ 186 (236)
T 3e8x_A 129 VSSVGTVDPDQ---------GPMNMRHYLVAKRLADDELK-------RSSLDYTIVRPGPLSNEESTGKVTVSP------ 186 (236)
T ss_dssp ECCTTCSCGGG---------SCGGGHHHHHHHHHHHHHHH-------HSSSEEEEEEECSEECSCCCSEEEEES------
T ss_pred EecCCCCCCCC---------ChhhhhhHHHHHHHHHHHHH-------HCCCCEEEEeCCcccCCCCCCeEEecc------
Confidence 99965543310 01356789999999998875 468999999999999986433211000
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.......+.+++|+|+++++++.++. .+|+.|+++++.
T Consensus 187 -~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~v~~~~ 224 (236)
T 3e8x_A 187 -HFSEITRSITRHDVAKVIAELVDQQH---TIGKTFEVLNGD 224 (236)
T ss_dssp -SCSCCCCCEEHHHHHHHHHHHTTCGG---GTTEEEEEEECS
T ss_pred -CCCcccCcEeHHHHHHHHHHHhcCcc---ccCCeEEEeCCC
Confidence 00011345689999999999997653 579999987773
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=221.52 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=166.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChh---HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLD---KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~---~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+|++|||||+||||+++|++|+++|+ +|++++|+.. .+++..+++... +.++.++.||++|.+++++++++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~-- 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTA-- 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHH--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhc--
Confidence 579999999999999999999999999 6999999874 345555666443 34789999999999999999886
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||||||+.... ...+.++++.++++|+.|++++.+.+.+ ..+.++||++
T Consensus 334 ---~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~---------------------~~~~~~~V~~ 389 (511)
T 2z5l_A 334 ---YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTAD---------------------IKGLDAFVLF 389 (511)
T ss_dssp ---SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSS---------------------CTTCCCEEEE
T ss_pred ---CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccCCCEEEEE
Confidence 6899999999987644 5678899999999999999998876531 1145899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc-cCCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV-NTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v-~T~~~~~~~~~~~~~~~~~ 373 (429)
||.++..+. ++...|+++|++++.|++.+ ...|+++++|+||++ .|+|..... ...+
T Consensus 390 SS~a~~~g~------------~g~~~YaaaKa~ld~la~~~----~~~gi~v~sv~pG~~~~tgm~~~~~------~~~~ 447 (511)
T 2z5l_A 390 SSVTGTWGN------------AGQGAYAAANAALDALAERR----RAAGLPATSVAWGLWGGGGMAAGAG------EESL 447 (511)
T ss_dssp EEGGGTTCC------------TTBHHHHHHHHHHHHHHHHH----HTTTCCCEEEEECCBCSTTCCCCHH------HHHH
T ss_pred eCHHhcCCC------------CCCHHHHHHHHHHHHHHHHH----HHcCCcEEEEECCcccCCccccccc------HHHH
Confidence 999988775 56889999999999988865 357999999999998 788765421 1111
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
. . ......+|+++++.++.++..+
T Consensus 448 ~-~-~g~~~l~~e~~a~~l~~al~~~ 471 (511)
T 2z5l_A 448 S-R-RGLRAMDPDAAVDALLGAMGRN 471 (511)
T ss_dssp H-H-HTBCCBCHHHHHHHHHHHHHHT
T ss_pred H-h-cCCCCCCHHHHHHHHHHHHhCC
Confidence 1 1 1124679999999999999655
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-25 Score=204.90 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=147.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++|+++||||+||||++++++|+++|+ +|++++|+.++++... ...+.++.+|++|.++++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~---- 83 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQ---- 83 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGS----
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhc----
Confidence 5689999999999999999999999999 9999999876543211 1246788999999988776654
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+||||||... ...+++..+++|+.++.++++++. +.+.++||++||.
T Consensus 84 ---~~d~vi~~ag~~~-----~~~~~~~~~~~n~~~~~~~~~~~~----------------------~~~~~~iv~~SS~ 133 (242)
T 2bka_A 84 ---GHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELAK----------------------AGGCKHFNLLSSK 133 (242)
T ss_dssp ---SCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEECCT
T ss_pred ---CCCEEEECCCccc-----ccCCcccceeeeHHHHHHHHHHHH----------------------HCCCCEEEEEccC
Confidence 6899999999753 124567889999999988877643 3345899999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCe-EEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGI-TVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gI-rVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
++..+ +...|+++|++++.+++.+ ++ ++++|+||.+.|++..... .++........
T Consensus 134 ~~~~~--------------~~~~Y~~sK~~~e~~~~~~-------~~~~~~~vrpg~v~~~~~~~~~--~~~~~~~~~~~ 190 (242)
T 2bka_A 134 GADKS--------------SNFLYLQVKGEVEAKVEEL-------KFDRYSVFRPGVLLCDRQESRP--GEWLVRKFFGS 190 (242)
T ss_dssp TCCTT--------------CSSHHHHHHHHHHHHHHTT-------CCSEEEEEECCEEECTTGGGSH--HHHHHHHHHCS
T ss_pred cCCCC--------------CcchHHHHHHHHHHHHHhc-------CCCCeEEEcCceecCCCCCCcH--HHHHHHHhhcc
Confidence 76532 3458999999999988754 45 8999999999998643211 11222222111
Q ss_pred Hh----hhccCCHHHHHHHHHHHhcCCC
Q psy12836 377 LV----WLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 377 ~~----~~~~~~peevA~~iv~l~~~~~ 400 (429)
.+ ..++.+++|+|++++++++++.
T Consensus 191 ~~~~~~~~~~~~~~dva~~~~~~~~~~~ 218 (242)
T 2bka_A 191 LPDSWASGHSVPVVTVVRAMLNNVVRPR 218 (242)
T ss_dssp CCTTGGGGTEEEHHHHHHHHHHHHTSCC
T ss_pred cCccccCCcccCHHHHHHHHHHHHhCcc
Confidence 22 3456799999999999997763
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=201.77 Aligned_cols=238 Identities=16% Similarity=0.065 Sum_probs=168.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEE-EeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR-KCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~-~~Dls~~~sv~~~~~~i~ 216 (429)
..++||++|||||+|+||++++++|+++|++|++++|+.++.+...+.+....+ .++.++ .+|++|.++++++++
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~--- 82 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP-GRFETAVVEDMLKQGAYDEVIK--- 82 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST-TTEEEEECSCTTSTTTTTTTTT---
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCC-CceEEEEecCCcChHHHHHHHc---
Confidence 457899999999999999999999999999999999998877665555433222 357777 799999887766653
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||..... ++++..+++|+.++.++++++.+ ..+.++||++||
T Consensus 83 ----~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~~ll~~~~~---------------------~~~~~~iv~~SS 132 (342)
T 1y1p_A 83 ----GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAAAA---------------------TPSVKRFVLTSS 132 (342)
T ss_dssp ----TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHHHT---------------------CTTCCEEEEECC
T ss_pred ----CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHh---------------------CCCCcEEEEecc
Confidence 689999999976432 34667899999999999988753 124579999999
Q ss_pred cccccCC-CCc--ccCCCCC----------------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 297 VAHKRGT-INK--EDLNSEN----------------SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 297 ~~~~~~~-~~~--~~l~~~~----------------~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
.+..... ... .++.+.. ...+...|+.||++.+.+++.++.+++. |+++++++||.+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-~~~~~~~rp~~v~g~ 211 (342)
T 1y1p_A 133 TVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP-HFTLNAVLPNYTIGT 211 (342)
T ss_dssp GGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEEEESEEECC
T ss_pred HHHhcCCCCCCCCcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEcCCceECC
Confidence 8775321 100 1122211 1124568999999999999999999876 899999999999998
Q ss_pred cccCCCC--CchhHHHHHHhH-----H---hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 358 ILRHSSY--YDSWLSTVVLKP-----L---VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 358 ~~~~~~~--~~~~~~~~~~~~-----~---~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
+...... ....+...+... . +...+.+++|+|++++.++..+ ..+|+.+..+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~~g~~~~~~g 274 (342)
T 1y1p_A 212 IFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLP---QIERRRVYGTA 274 (342)
T ss_dssp CSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCT---TCCSCEEEECC
T ss_pred CCCCCCCCccHHHHHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcCc---ccCCceEEEeC
Confidence 7543211 011111111110 0 1224578999999999998654 34576544444
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-23 Score=201.96 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=168.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc-CC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR-KA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~-G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
...++||+||||||+|+||++++++|+++ |+ +|++++|+..+.....+++. ..++.++.+|++|.++++++++
T Consensus 16 ~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~- 90 (344)
T 2gn4_A 16 QNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALE- 90 (344)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTT-
T ss_pred HHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHh-
Confidence 34578999999999999999999999999 98 99999999888776655543 2368889999999998877764
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|+||||||..... ......+..+++|+.|+.++++++.+ .+.++||++
T Consensus 91 ------~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~l~~aa~~----------------------~~v~~~V~~ 140 (344)
T 2gn4_A 91 ------GVDICIHAAALKHVP--IAEYNPLECIKTNIMGASNVINACLK----------------------NAISQVIAL 140 (344)
T ss_dssp ------TCSEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHH----------------------TTCSEEEEE
T ss_pred ------cCCEEEECCCCCCCC--chhcCHHHHHHHHHHHHHHHHHHHHh----------------------CCCCEEEEe
Confidence 689999999976421 12344567899999999999998873 245799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||..+.. +...|++||++++.++++++.++++.|+++++|.||.+.++.... .+.+.....
T Consensus 141 SS~~~~~---------------p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~----i~~~~~~~~ 201 (344)
T 2gn4_A 141 STDKAAN---------------PINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSV----VPFFKKLVQ 201 (344)
T ss_dssp CCGGGSS---------------CCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTSH----HHHHHHHHH
T ss_pred cCCccCC---------------CccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCCH----HHHHHHHHH
Confidence 9976532 356899999999999999999888889999999999998875211 111211111
Q ss_pred h---HHh------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 375 K---PLV------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 375 ~---~~~------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
. +++ ...+.+++|+|+++++++..+ ..|+.|..+++
T Consensus 202 ~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~----~~g~~~~~~~~ 246 (344)
T 2gn4_A 202 NKASEIPITDIRMTRFWITLDEGVSFVLKSLKRM----HGGEIFVPKIP 246 (344)
T ss_dssp HTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHC----CSSCEEEECCC
T ss_pred cCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhc----cCCCEEecCCC
Confidence 1 111 123578999999999999654 25777766654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=203.40 Aligned_cols=243 Identities=15% Similarity=0.043 Sum_probs=172.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|+||||||+|+||++++++|+++|++|++++|+.+...+..+++..... ..+.++.+|++|.+++++++++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITG-KTPAFHETDVSDERALARIFDA-----H 77 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHS-CCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcC-CCceEEEeecCCHHHHHHHHhc-----c
Confidence 468999999999999999999999999999999987766555555544322 3578889999999999998876 4
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+||||||..... ...+..+..+++|+.+++++++++. +.+.++||++||.+.+
T Consensus 78 ~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~iv~~SS~~~~ 133 (341)
T 3enk_A 78 PITAAIHFAALKAVG--ESVAKPIEYYRNNLDSLLSLLRVMR----------------------ERAVKRIVFSSSATVY 133 (341)
T ss_dssp CCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEEEEGGGB
T ss_pred CCcEEEECccccccC--ccccChHHHHHHHHHHHHHHHHHHH----------------------hCCCCEEEEEecceEe
Confidence 799999999986422 1234455778999999888776543 3356799999997654
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC---------CCCchhHHH
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS---------SYYDSWLST 371 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~---------~~~~~~~~~ 371 (429)
+.....++.+.....+...|+.||++.+.+++.++.++. |++++++.||.+-.+..... ....+.+.+
T Consensus 134 -g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~ 210 (341)
T 3enk_A 134 -GVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADP--SWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQ 210 (341)
T ss_dssp -CSCSSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHH
T ss_pred -cCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCC--CceEEEEeeccccCCccccccCCCcccCccchHHHHHH
Confidence 333333445555556778999999999999999998864 59999999998876632110 000011111
Q ss_pred HHHhH---Hh-------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKP---LV-------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~---~~-------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..... +. ..-+..++|+|+++++++..+ .....|+.|+++++...
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~ni~~~~~~ 271 (341)
T 3enk_A 211 VAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDAL-ERRDASLTVNLGTGRGY 271 (341)
T ss_dssp HHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHH-HHHTSCEEEEESCSCCE
T ss_pred HHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhh-hcCCcceEEEeCCCCce
Confidence 11110 00 011345799999999998652 12346888898877544
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=199.84 Aligned_cols=230 Identities=13% Similarity=0.122 Sum_probs=168.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+.|++|||||+|+||++++++|+++|++|++++|+.+. +. + .+.++.+|++|.++++++++.
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~~~~~~~~~~----- 72 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDSQRVKKVISD----- 72 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCHHHHHHHHHH-----
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCHHHHHHHHHh-----
Confidence 356899999999999999999999999999999998754 21 1 467889999999999988876
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+++|+||||||..... .+.++++..+++|+.|+.++++++ +.+. +.++||++||.+.
T Consensus 73 ~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~--------------------~~~~iv~~SS~~v 129 (321)
T 2pk3_A 73 IKPDYIFHLAAKSSVK--DSWLNKKGTFSTNVFGTLHVLDAV-RDSN--------------------LDCRILTIGSSEE 129 (321)
T ss_dssp HCCSEEEECCSCCCHH--HHTTCHHHHHHHHHHHHHHHHHHH-HHHT--------------------CCCEEEEEEEGGG
T ss_pred cCCCEEEEcCcccchh--hhhhcHHHHHHHHHHHHHHHHHHH-HHhC--------------------CCCeEEEEccHHh
Confidence 3789999999975421 223467889999999999999988 4431 3589999999876
Q ss_pred ccCCC-CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh---
Q psy12836 300 KRGTI-NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK--- 375 (429)
Q Consensus 300 ~~~~~-~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~--- 375 (429)
+.... ...++.+.....+...|+.||++.+.+++.++.++ |++++.+.||.+.++....... .+.+...+..
T Consensus 130 ~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~~~~~~-~~~~~~~~~~~~~ 205 (321)
T 2pk3_A 130 YGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY---GMDIIHTRTFNHIGPGQSLGFV-TQDFAKQIVDIEM 205 (321)
T ss_dssp TBSCCGGGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCCTTSH-HHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc---CCCEEEEEeCcccCcCCCCCch-HHHHHHHHHHHhc
Confidence 43321 22334444455667899999999999999999874 7999999999998886543211 1111111111
Q ss_pred H----H-------hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 P----L-------VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~----~-------~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. + +...+.+++|+|+++++++..+ .+|+.|+++++...
T Consensus 206 g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~----~~g~~~~i~~~~~~ 254 (321)
T 2pk3_A 206 EKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG----KTGDVYNVCSGIGT 254 (321)
T ss_dssp TSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC----CTTCEEEESCSCEE
T ss_pred CCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC----CCCCeEEeCCCCCe
Confidence 0 0 0123468999999999999654 36888888877543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=207.34 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|+||+++||||+|+||++++++|+++|++|++++|+.++... +.+.......++.++.+|++|.++++++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV---- 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc----
Confidence 468999999999999999999999999999999998765321 11211112235788899999999999998876
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+ + . ..++||++||.+.
T Consensus 75 -~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~-~-------------------~-~~~~iv~~SS~~v 130 (345)
T 2z1m_A 75 -QPDEVYNLAAQSFV--GVSFEQPILTAEVDAIGVLRILEALRT-V-------------------K-PDTKFYQASTSEM 130 (345)
T ss_dssp -CCSEEEECCCCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHH-H-------------------C-TTCEEEEEEEGGG
T ss_pred -CCCEEEECCCCcch--hhhhhCHHHHHHHHHHHHHHHHHHHHH-h-------------------C-CCceEEEEechhh
Confidence 78999999997531 123456788999999999999998873 2 1 1379999999865
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc---CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE---GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~---~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
+.. ....++.+.....+...|++||++.+.+++.++.+++ ..++.++.+.||...|.+..... . ........
T Consensus 131 yg~-~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~---~-~~~~~~~~ 205 (345)
T 2z1m_A 131 FGK-VQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKIT---Y-SLARIKYG 205 (345)
T ss_dssp GCS-CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHH---H-HHHHHHTT
T ss_pred cCC-CCCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHH---H-HHHHHHcC
Confidence 432 2222334444556778999999999999999999876 34567788899988776532110 0 00000000
Q ss_pred ---------Hhhhc-cCCHHHHHHHHHHHhcCC
Q psy12836 377 ---------LVWLF-IKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 ---------~~~~~-~~~peevA~~iv~l~~~~ 399 (429)
....+ +..++|+|+++++++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~ 238 (345)
T 2z1m_A 206 LQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQP 238 (345)
T ss_dssp SCSCEEESCTTCEECCEEHHHHHHHHHHHHTSS
T ss_pred CCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCC
Confidence 01112 568999999999999765
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=198.55 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=169.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|+||||||+|+||++++++|+++|++|++++|+. .......+.+.. ..++.++.+|++|.++++++++.. +
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 73 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----M 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----C
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCHHHHHHHHhcc-----C
Confidence 5899999999999999999999999999999853 222222333332 125778899999999999988763 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+||||||.... ..+.++++..+++|+.++.++++++.+.. ..++||++||.+.+.
T Consensus 74 ~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~---------------------~~~~iv~~SS~~v~g 130 (347)
T 1orr_A 74 PDSCFHLAGQVAM--TTSIDNPCMDFEINVGGTLNLLEAVRQYN---------------------SNCNIIYSSTNKVYG 130 (347)
T ss_dssp CSEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHC---------------------TTCEEEEEEEGGGGT
T ss_pred CCEEEECCcccCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHhC---------------------CCceEEEeccHHHhC
Confidence 8999999997532 12345678899999999999999987643 126999999976543
Q ss_pred CCCCc---------------ccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-
Q psy12836 302 GTINK---------------EDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY- 365 (429)
Q Consensus 302 ~~~~~---------------~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~- 365 (429)
..... ..+.+.....+...|+.||++.+.+++.++.++ |+++++++||.+.++........
T Consensus 131 ~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~~~~~~~~ 207 (347)
T 1orr_A 131 DLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---GLNTVVFRHSSMYGGRQFATYDQG 207 (347)
T ss_dssp TCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTCCCBTTBC
T ss_pred CCCcCCcccccccccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEccCceeCcCCCCCCcCc
Confidence 22110 012233344567899999999999999999885 79999999999999875332110
Q ss_pred -chhHHHHHHhHH-----hhhc---------cCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 366 -DSWLSTVVLKPL-----VWLF---------IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 366 -~~~~~~~~~~~~-----~~~~---------~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...+........ +... +..++|+|+++++++..+ ...+|+.|+++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~--~~~~g~~~~v~~~~ 270 (347)
T 1orr_A 208 WVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANV--SKIRGNAFNIGGTI 270 (347)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTH--HHHTTCEEEESSCG
T ss_pred HHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhcc--ccCCCCEEEeCCCC
Confidence 011111111111 1111 348999999999999642 34679999998875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=197.65 Aligned_cols=242 Identities=12% Similarity=0.042 Sum_probs=171.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh----HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD----KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~----~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.++++|++|||||+|+||++++++|+++|++|++++|+.. .++...+++.... ..++.++.+|++|.++++++++
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~ 101 (352)
T 1sb8_A 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-WSNFKFIQGDIRNLDDCNNACA 101 (352)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-HTTEEEEECCTTSHHHHHHHHT
T ss_pred cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhccccc-CCceEEEECCCCCHHHHHHHhc
Confidence 3467889999999999999999999999999999999753 3333332221110 1257889999999998888775
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++|+||||||..... .+.++++..+++|+.++.++++++.+ .+.++||+
T Consensus 102 -------~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~----------------------~~~~~~v~ 150 (352)
T 1sb8_A 102 -------GVDYVLHQAALGSVP--RSINDPITSNATNIDGFLNMLIAARD----------------------AKVQSFTY 150 (352)
T ss_dssp -------TCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHH----------------------TTCSEEEE
T ss_pred -------CCCEEEECCcccCch--hhhhCHHHHHHHHHHHHHHHHHHHHH----------------------cCCCEEEE
Confidence 689999999975321 23456788899999999999988752 24579999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLS 370 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~ 370 (429)
+||.+.+.+. ...++.+.....+...|+.||++.+.+++.++.++ |+++++++||.+.++........ .+.+.
T Consensus 151 ~SS~~~~~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~ 226 (352)
T 1sb8_A 151 AASSSTYGDH-PGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWT 226 (352)
T ss_dssp EEEGGGGTTC-CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTCCCCSTTCCHHHHHH
T ss_pred eccHHhcCCC-CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEEECceeCcCCCCCcchhhHHHHHH
Confidence 9998765432 22233344444567899999999999999998875 79999999999988865432100 11111
Q ss_pred HHHHhHHhh---------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVVLKPLVW---------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~~~~~~~---------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+....+. ..+..++|+|+++++++..+ ....|+.|+++++...
T Consensus 227 ~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~~ni~~~~~~ 280 (352)
T 1sb8_A 227 SSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAG--LDARNQVYNIAVGGRT 280 (352)
T ss_dssp HHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC--GGGCSEEEEESCSCCE
T ss_pred HHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcc--ccCCCceEEeCCCCCc
Confidence 212111110 12457999999999998653 2346888888776543
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=197.04 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=170.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-KAKVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+||||||+|+||++++++|+++ |++|++++|+.. ..+.. +++. ...++.++.+|++|.+++++++++.
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~----- 72 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS---ESNRYNFEHADICDSAEITRIFEQY----- 72 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCHHHHHHHHHHH-----
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh---cCCCeEEEECCCCCHHHHHHHHhhc-----
Confidence 4999999999999999999998 799999998642 21111 1111 1236888999999999999988763
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+||||||... ...+.++++..+++|+.|+.++++++.+.|...... .+..++||++||.+.+
T Consensus 73 ~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~-------------~~~~~~iv~~SS~~v~ 137 (361)
T 1kew_A 73 QPDAVMHLAAESH--VDRSITGPAAFIETNIVGTYALLEVARKYWSALGED-------------KKNNFRFHHISTDEVY 137 (361)
T ss_dssp CCSEEEECCSCCC--HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHH-------------HHHHCEEEEEEEGGGG
T ss_pred CCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccc-------------cccCceEEEeCCHHHh
Confidence 7899999999754 122345678899999999999999999887510000 0013599999997643
Q ss_pred cCCCC-cc--------cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 301 RGTIN-KE--------DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 301 ~~~~~-~~--------~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
..... .. .+.+.....+...|+.||++.+.+++.++.++ |+++++|+||.+.++....... .+.+..
T Consensus 138 g~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~-~~~~~~ 213 (361)
T 1kew_A 138 GDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYHFPEKL-IPLVIL 213 (361)
T ss_dssp CCCCCGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSH-HHHHHH
T ss_pred CCCcccccccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCcEEEEeeceeECCCCCcccH-HHHHHH
Confidence 22110 00 33344445677899999999999999999886 7999999999999987532110 111111
Q ss_pred HHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.... +++ ...+..++|+|+++++++..+ .+|+.|+++++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~~~~v~~~~~~ 264 (361)
T 1kew_A 214 NALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG----KAGETYNIGGHNEK 264 (361)
T ss_dssp HHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC----CTTCEEEECCCCEE
T ss_pred HHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCC----CCCCEEEecCCCee
Confidence 1111 111 123457999999999999643 37888888887543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=195.20 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=166.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++++|||||+|+||++++++|+++| ++|++++|+.. ..+.. +++ ....++.++.+|++|.+++++++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~---- 73 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDL---EDDPRYTFVKGDVADYELVKELV---- 73 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTT---TTCTTEEEEECCTTCHHHHHHHH----
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhh---ccCCceEEEEcCCCCHHHHHHHh----
Confidence 45689999999999999999999997 89999998642 11111 111 11236888999999999988877
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+++|+||||||.... ..+.++++..+++|+.++.++++++.+. ...++||++||
T Consensus 74 ---~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---------------------~~~~~iv~~SS 127 (336)
T 2hun_A 74 ---RKVDGVVHLAAESHV--DRSISSPEIFLHSNVIGTYTLLESIRRE---------------------NPEVRFVHVST 127 (336)
T ss_dssp ---HTCSEEEECCCCCCH--HHHHHCTHHHHHHHHHHHHHHHHHHHHH---------------------CTTSEEEEEEE
T ss_pred ---hCCCEEEECCCCcCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHh---------------------CCCcEEEEecc
Confidence 368999999997531 2234567788999999999999988753 12379999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK- 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~- 375 (429)
.+.+.. ....++.+.....+...|+.||++.+.+++.++.++ |+++++++||.+.++....... .+.+......
T Consensus 128 ~~vyg~-~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~g~~~~~~~~-~~~~~~~~~~~ 202 (336)
T 2hun_A 128 DEVYGD-ILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY---NLNASITRCTNNYGPYQFPEKL-IPKTIIRASLG 202 (336)
T ss_dssp GGGGCC-CSSSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEEECEEESTTCCTTSH-HHHHHHHHHTT
T ss_pred HHHHCC-CCCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeeeeeCcCCCcCch-HHHHHHHHHcC
Confidence 765432 222234444455677899999999999999999875 7999999999999887432110 1111111111
Q ss_pred -HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 -PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 -~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+++ ...+..++|+|+++++++..+ .+|+.|+++++...
T Consensus 203 ~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~g~~~~v~~~~~~ 248 (336)
T 2hun_A 203 LKIPIYGTGKNVRDWLYVEDHVRAIELVLLKG----ESREIYNISAGEEK 248 (336)
T ss_dssp CCEEEETC---CEEEEEHHHHHHHHHHHHHHC----CTTCEEEECCSCEE
T ss_pred CCceEeCCCCceeeeEEHHHHHHHHHHHHhCC----CCCCEEEeCCCCcc
Confidence 111 123567999999999998543 36888888887543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=198.40 Aligned_cols=244 Identities=13% Similarity=-0.021 Sum_probs=170.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++|+||||||+|+||++++++|+++|++|++++|+.++.....+.+.. ..++.++.+|+++.+++.++++.+
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~--- 79 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREF--- 79 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHH---
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhc---
Confidence 35689999999999999999999999999999999987655443333321 235778899999999999998876
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||... ...+.++++..+++|+.++.++++++.+. ...++||++||.+
T Consensus 80 --~~d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---------------------~~~~~~v~~SS~~ 134 (357)
T 1rkx_A 80 --QPEIVFHMAAQPL--VRLSYSEPVETYSTNVMGTVYLLEAIRHV---------------------GGVKAVVNITSDK 134 (357)
T ss_dssp --CCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---------------------CCCCEEEEECCGG
T ss_pred --CCCEEEECCCCcc--cccchhCHHHHHHHHHHHHHHHHHHHHHh---------------------CCCCeEEEecCHH
Confidence 6899999999632 22245667889999999999999988641 1257999999987
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc------CCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE------GTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~------~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
.+..........+.....+...|+.||++.+.+++.++.++. +.|+++++++||.+.++.........+.+...
T Consensus 135 vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~ 214 (357)
T 1rkx_A 135 CYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRA 214 (357)
T ss_dssp GBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHH
T ss_pred HhCCCCcCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHH
Confidence 643321111233333445678999999999999999999885 45899999999999887542211111112121
Q ss_pred HHhHHh--------hhccCCHHHHHHHHHHHhcCCC-cccCCceEEecCc
Q psy12836 373 VLKPLV--------WLFIKSPRQGAQTIVYASLDPS-LENVSGKYFACYD 413 (429)
Q Consensus 373 ~~~~~~--------~~~~~~peevA~~iv~l~~~~~-~~~vtG~~i~~~g 413 (429)
+....+ ..-+..++|+|++++.++.... .....|+.|++.+
T Consensus 215 ~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~ 264 (357)
T 1rkx_A 215 FEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGP 264 (357)
T ss_dssp HHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCC
T ss_pred HhcCCCEEECCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECC
Confidence 111100 1124578999999999885310 0012356667664
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=183.16 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=140.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHH-HcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELA-KRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La-~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|+++||||+||||++++++|+ ++|++|++++|+.+ ++++.. .. ...+.++++|++|.++++++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~~------ 72 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAVT------ 72 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHHT------
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHHc------
Confidence 4789999999999999999999 89999999999987 655432 11 2368889999999999988875
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+||||||.. |+. ++.+++.|+ +.+.++||++||..+
T Consensus 73 -~~d~vv~~ag~~-----------------n~~-----~~~~~~~~~------------------~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 73 -NAEVVFVGAMES-----------------GSD-----MASIVKALS------------------RXNIRRVIGVSMAGL 111 (221)
T ss_dssp -TCSEEEESCCCC-----------------HHH-----HHHHHHHHH------------------HTTCCEEEEEEETTT
T ss_pred -CCCEEEEcCCCC-----------------Chh-----HHHHHHHHH------------------hcCCCeEEEEeecee
Confidence 579999999853 222 777788887 446689999999887
Q ss_pred ccCCCCcccCCCCCCCCCcc-hhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHHHHHHhHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQ-AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~-~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~~~~~~~~ 377 (429)
..+.+.... ... ..... .|+++|.+++.+.+. .||++++|+||++.++ .......... ...
T Consensus 112 ~~~~~~~~~--~~~-~~~~~~~y~~~K~~~e~~~~~-------~~i~~~~vrpg~v~~~~~~~~~~~~~~-------~~~ 174 (221)
T 3r6d_A 112 SGEFPVALE--KWT-FDNLPISYVQGERQARNVLRE-------SNLNYTILRLTWLYNDPEXTDYELIPE-------GAQ 174 (221)
T ss_dssp TSCSCHHHH--HHH-HHTSCHHHHHHHHHHHHHHHH-------SCSEEEEEEECEEECCTTCCCCEEECT-------TSC
T ss_pred cCCCCcccc--ccc-ccccccHHHHHHHHHHHHHHh-------CCCCEEEEechhhcCCCCCcceeeccC-------Ccc
Confidence 654311000 000 00112 799999999887653 6899999999999887 3222210000 000
Q ss_pred hhhccCCHHHHHHHHHHHh--cCCCcccCCceEEecCcc
Q psy12836 378 VWLFIKSPRQGAQTIVYAS--LDPSLENVSGKYFACYDR 414 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~--~~~~~~~vtG~~i~~~gg 414 (429)
......+++|+|+++++++ +++ ..++++. +.++++
T Consensus 175 ~~~~~~~~~dvA~~~~~l~~~~~~-~~~~~~~-~~i~~~ 211 (221)
T 3r6d_A 175 FNDAQVSREAVVKAIFDILHAADE-TPFHRTS-IGVGEP 211 (221)
T ss_dssp CCCCEEEHHHHHHHHHHHHTCSCC-GGGTTEE-EEEECT
T ss_pred CCCceeeHHHHHHHHHHHHHhcCh-hhhhcce-eeecCC
Confidence 1123568999999999999 876 3455544 444433
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=195.58 Aligned_cols=227 Identities=9% Similarity=0.021 Sum_probs=159.3
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
....+++||++|||||+|+||++++++|+++|++|++++|+.....+..+++ .++.++.+|++|.+++++++++
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l------~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV------AGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc------CCceEEEeeCCCHHHHHHHHhh
Confidence 4466889999999999999999999999999999999999754322111111 2578889999999999999886
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+ ++|+||||||..... +.++++ +++|+.+++++++++.. .+.++||++
T Consensus 87 ~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----------------------~~~~~iV~~ 134 (330)
T 2pzm_A 87 F-----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSINVAKAASK----------------------AGVKRLLNF 134 (330)
T ss_dssp H-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----------------------HTCSEEEEE
T ss_pred c-----CCCEEEECCccCCCc---cccChh--HHHHHHHHHHHHHHHHH----------------------cCCCEEEEe
Confidence 5 789999999986532 345565 99999999999998862 135799999
Q ss_pred cCcccccCCCCcc--cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeE-EEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 295 SSVAHKRGTINKE--DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGIT-VNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~--~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIr-Vn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
||.+.+... ... ++.+.. .+...|++||++++.+++.+ ++....|| ++.+.||. .+++... +..
T Consensus 135 SS~~~~~~~-~~~~~~~~E~~--~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~-~~~~~~~-------~~~ 201 (330)
T 2pzm_A 135 QTALCYGRP-ATVPIPIDSPT--APFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRL-AIGPIPT-------FYK 201 (330)
T ss_dssp EEGGGGCSC-SSSSBCTTCCC--CCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTC-CSSHHHH-------HHH
T ss_pred cCHHHhCCC-ccCCCCcCCCC--CCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCC-CCCHHHH-------HHH
Confidence 998764322 111 222222 35679999999999999877 34334566 56666664 3332111 111
Q ss_pred HHHh--HHh----hhccCCHHHHHH-HHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLK--PLV----WLFIKSPRQGAQ-TIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~--~~~----~~~~~~peevA~-~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+.. ... ...+.+++|+|+ ++++++..+. |+.|+++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~Dva~~a~~~~~~~~~-----g~~~~v~~~~~~ 249 (330)
T 2pzm_A 202 RLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRP-----TGVFNVSTGEGH 249 (330)
T ss_dssp HHHTTCCCCEESCEECEEEHHHHHHHHHHHTSTTCC-----CEEEEESCSCCE
T ss_pred HHHcCCEEeCCCCEecceeHHHHHHHHHHHHhhcCC-----CCEEEeCCCCCC
Confidence 1110 000 234578999999 9999996641 888888887544
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=194.80 Aligned_cols=241 Identities=14% Similarity=0.055 Sum_probs=165.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+++++++||||||+|+||++++++|+++| ++|+..+|...... ...+.......++.++.+|++|.++++++++..
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER 97 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence 34678999999999999999999999999 67887777542111 111222222346889999999999999998874
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+|||+||..... ...++.+..+++|+.++.++++++. +.+.+++|++|
T Consensus 98 -----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~----------------------~~~~~~~v~~S 148 (346)
T 4egb_A 98 -----DVQVIVNFAAESHVD--RSIENPIPFYDTNVIGTVTLLELVK----------------------KYPHIKLVQVS 148 (346)
T ss_dssp -----TCCEEEECCCCC-----------CHHHHHHTHHHHHHHHHHH----------------------HSTTSEEEEEE
T ss_pred -----CCCEEEECCcccchh--hhhhCHHHHHHHHHHHHHHHHHHHH----------------------hcCCCEEEEeC
Confidence 689999999986432 2446677889999999998888775 33457999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.+.+........+.+.....+...|+.||++.+.+++.++.+. |++++.+.||.+..+....... .+.+......
T Consensus 149 S~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~ 224 (346)
T 4egb_A 149 TDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY---QLPVIVTRCSNNYGPYQYPEKL-IPLMVTNALE 224 (346)
T ss_dssp EGGGGCCCCSSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSH-HHHHHHHHHT
T ss_pred chHHhCCCCcCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeecceeCcCCCccch-HHHHHHHHHc
Confidence 97665443233445555566678899999999999999998874 7999999999998775432211 1112121211
Q ss_pred HHhhh---------ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWL---------FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~---------~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.. -+..++|+|+++++++..+. .|+.|++.++...
T Consensus 225 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~----~g~~~~i~~~~~~ 271 (346)
T 4egb_A 225 GKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR----VGEVYNIGGNNEK 271 (346)
T ss_dssp TCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC----TTCEEEECCSCCE
T ss_pred CCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC----CCCEEEECCCCce
Confidence 11111 12358999999999997652 6888888877543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=192.12 Aligned_cols=235 Identities=17% Similarity=0.107 Sum_probs=157.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++|+||||||+|+||++++++|+++|++|+++.|+.+...+... +..... ..++.++.+|++|.++++++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 76 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADEGSFDEAIK----- 76 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence 468999999999999999999999999999999998764433221 111000 1257788999999988887764
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
.+|+|||+|+.... . ..+..+..+++|+.|+.++++++.+.. ..++||++||.+
T Consensus 77 --~~d~Vih~A~~~~~-~--~~~~~~~~~~~nv~gt~~ll~a~~~~~---------------------~~~riV~~SS~~ 130 (337)
T 2c29_D 77 --GCTGVFHVATPMDF-E--SKDPENEVIKPTIEGMLGIMKSCAAAK---------------------TVRRLVFTSSAG 130 (337)
T ss_dssp --TCSEEEECCCCCCS-S--CSSHHHHTHHHHHHHHHHHHHHHHHHS---------------------CCCEEEEECCGG
T ss_pred --CCCEEEEeccccCC-C--CCChHHHHHHHHHHHHHHHHHHHHhCC---------------------CccEEEEeeeHh
Confidence 47999999986521 1 122345689999999999999886421 247999999988
Q ss_pred cccCCCCcc-cCCCCCCC---------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 299 HKRGTINKE-DLNSENSY---------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 299 ~~~~~~~~~-~l~~~~~~---------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+..+..... ...+.... ++...|++||++.+.+++.++.+ .|+++++++||.+.++...... ...
T Consensus 131 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~~lrp~~v~Gp~~~~~~--~~~ 205 (337)
T 2c29_D 131 TVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE---NNIDFITIIPTLVVGPFIMSSM--PPS 205 (337)
T ss_dssp GTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEECEEESCCSCSSC--CHH
T ss_pred hcccCCCCCcccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCceECCCCCCCC--Cch
Confidence 665432111 11121100 13447999999999988877754 4799999999999988643321 111
Q ss_pred HHHH---H------HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 369 LSTV---V------LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 369 ~~~~---~------~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.... . .......++..++|+|+++++++..+ ..+|.++..+++
T Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~~~~~~~~~~~ 257 (337)
T 2c29_D 206 LITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENP---KAEGRYICSSHD 257 (337)
T ss_dssp HHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCT---TCCEEEEECCEE
T ss_pred HHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCc---ccCceEEEeCCC
Confidence 1110 0 00111234789999999999999654 235766544443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=187.29 Aligned_cols=218 Identities=16% Similarity=0.022 Sum_probs=153.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++|+++||||+|+||++++++|+++ |++|++++|+.++.++. ...+.++.+|++|.++++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~---- 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADSINPAFQ---- 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHHHHHHHT----
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc---------CCCeeEEEecCCCHHHHHHHHc----
Confidence 46799999999999999999999999 89999999998665432 1245678999999999888775
Q ss_pred hCCCeeEEEEccccCCCC-----------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 218 ENKKINVLINNAGVSGCR-----------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~-----------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
.+|+||||||..... .....+.++..+++|+.++.++++++.+ .
T Consensus 69 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----------------------~ 123 (253)
T 1xq6_A 69 ---GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----------------------A 123 (253)
T ss_dssp ---TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----------------------H
T ss_pred ---CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHH----------------------c
Confidence 479999999975321 1112234456789999999888877642 2
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~ 366 (429)
+.++||++||.++...... . .. .+...|+.+|++++.+.+. .|+++++|+||.+.++.........
T Consensus 124 ~~~~iv~~SS~~~~~~~~~---~---~~-~~~~~y~~sK~~~e~~~~~-------~~i~~~~vrpg~v~~~~~~~~~~~~ 189 (253)
T 1xq6_A 124 GVKHIVVVGSMGGTNPDHP---L---NK-LGNGNILVWKRKAEQYLAD-------SGTPYTIIRAGGLLDKEGGVRELLV 189 (253)
T ss_dssp TCSEEEEEEETTTTCTTCG---G---GG-GGGCCHHHHHHHHHHHHHT-------SSSCEEEEEECEEECSCSSSSCEEE
T ss_pred CCCEEEEEcCccCCCCCCc---c---cc-ccchhHHHHHHHHHHHHHh-------CCCceEEEecceeecCCcchhhhhc
Confidence 4579999999876432110 0 00 1123588899999887653 6899999999999887643211000
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
... ..+.. ....+.+++|+|+++++++..+. .+|+.|+++++.
T Consensus 190 ~~~-~~~~~--~~~~~~~~~Dva~~~~~~~~~~~---~~g~~~~i~~~~ 232 (253)
T 1xq6_A 190 GKD-DELLQ--TDTKTVPRADVAEVCIQALLFEE---AKNKAFDLGSKP 232 (253)
T ss_dssp EST-TGGGG--SSCCEEEHHHHHHHHHHHTTCGG---GTTEEEEEEECC
T ss_pred cCC-cCCcC--CCCcEEcHHHHHHHHHHHHcCcc---ccCCEEEecCCC
Confidence 000 00100 11235689999999999997653 478888888764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=193.08 Aligned_cols=228 Identities=18% Similarity=0.101 Sum_probs=160.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++|||||+|+||++++++|+++|++|++++|...... +.+ . ..+.++.+|++|.+++++++++. ++|
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~----~-~~~~~~~~Dl~~~~~~~~~~~~~-----~~d 68 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV----P-KGVPFFRVDLRDKEGVERAFREF-----RPT 68 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS----C-TTCCEECCCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc----c-cCeEEEECCCCCHHHHHHHHHhc-----CCC
Confidence 6999999999999999999999999999988542211 011 0 23567789999999999888753 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++|||||.... ..+.++++..+++|+.|++++++++. +.+.++||++||.++.++.
T Consensus 69 ~vi~~a~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~----------------------~~~~~~iv~~SS~~~~~g~ 124 (311)
T 2p5y_A 69 HVSHQAAQASV--KVSVEDPVLDFEVNLLGGLNLLEACR----------------------QYGVEKLVFASTGGAIYGE 124 (311)
T ss_dssp EEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHH----------------------HTTCSEEEEEEEHHHHHCC
T ss_pred EEEECccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHH----------------------HhCCCEEEEeCCChhhcCC
Confidence 99999997532 12345678899999999999998875 2245799999998444432
Q ss_pred -CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--CchhHHHHHHhHHh--
Q psy12836 304 -INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSWLSTVVLKPLV-- 378 (429)
Q Consensus 304 -~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~-- 378 (429)
....+..+.....+...|++||++.+.+++.++.++ |++++++.||.+.++....... ..+.+........+
T Consensus 125 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (311)
T 2p5y_A 125 VPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY---GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVT 201 (311)
T ss_dssp CCTTCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc---CCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcE
Confidence 111223333344567799999999999999998875 7999999999998886433210 00111111111111
Q ss_pred ------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++|+|+++++++..+ |+.|+++++...
T Consensus 202 ~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~------~~~~~i~~~~~~ 246 (311)
T 2p5y_A 202 LYARKTPGDEGCVRDYVYVGDVAEAHALALFSL------EGIYNVGTGEGH 246 (311)
T ss_dssp EECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC------CEEEEESCSCCE
T ss_pred EEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC------CCEEEeCCCCCc
Confidence 112346899999999998543 677888776543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=189.27 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=172.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC---ceEEEEEeeCCCHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN---KYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~---~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+.+++|+||||||+|+||++++++|+++|++|++++|+..........+...... .++.++.+|++|.+++.++++
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~- 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK- 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT-
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc-
Confidence 3456899999999999999999999999999999999765444333433322110 368899999999998887765
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|+|||+||.... ....++.+..+++|+.++.++++++. +.+.+++|++
T Consensus 100 ------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~----------------------~~~~~~~v~~ 149 (351)
T 3ruf_A 100 ------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFLNILHAAK----------------------NAQVQSFTYA 149 (351)
T ss_dssp ------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHH----------------------HTTCSEEEEE
T ss_pred ------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEE
Confidence 68999999997532 22345667789999999999888775 3345799999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC---chhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY---DSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~~ 371 (429)
||.+.+... ...++.+.....+...|+.+|.+.+.+++.++.+. |++++.+.||.+-.+........ .+.+..
T Consensus 150 SS~~vyg~~-~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 225 (351)
T 3ruf_A 150 ASSSTYGDH-PALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY---GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTA 225 (351)
T ss_dssp EEGGGGTTC-CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECSEESTTCCCCSTTCCHHHHHHH
T ss_pred ecHHhcCCC-CCCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeeCceeCcCCCCCcchhhHHHHHHH
Confidence 997665332 23344455555667899999999999999998875 79999999999987754332111 111112
Q ss_pred HHHhHHhh---------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVW---------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~---------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+....+. .-+..++|+|++++.++..+ ....|+.|++.++...
T Consensus 226 ~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~--~~~~~~~~ni~~~~~~ 278 (351)
T 3ruf_A 226 AMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAK--DSAKDNIYNVAVGDRT 278 (351)
T ss_dssp HHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCC--GGGCSEEEEESCSCCE
T ss_pred HHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhc--cccCCCEEEeCCCCcc
Confidence 12211111 12345899999999998663 2346888888776543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=182.95 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=151.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~~g~i 222 (429)
+++||||+|+||++++++|+++|++|++++|+.++.... ..+.++++|++| .++++++++ ++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~-------~~ 64 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLH-------GM 64 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTT-------TC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHc-------CC
Confidence 599999999999999999999999999999998654321 368889999999 888877664 68
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||... ...+++|+.++.++++++. +.+.++||++||..+..+
T Consensus 65 d~vi~~ag~~~----------~~~~~~n~~~~~~l~~a~~----------------------~~~~~~iv~~SS~~~~~~ 112 (219)
T 3dqp_A 65 DAIINVSGSGG----------KSLLKVDLYGAVKLMQAAE----------------------KAEVKRFILLSTIFSLQP 112 (219)
T ss_dssp SEEEECCCCTT----------SSCCCCCCHHHHHHHHHHH----------------------HTTCCEEEEECCTTTTCG
T ss_pred CEEEECCcCCC----------CCcEeEeHHHHHHHHHHHH----------------------HhCCCEEEEECcccccCC
Confidence 99999999864 2378999999998888773 335579999999876543
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhcc
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFI 382 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
.. ..+ ....+...|+.+|++.+.+.+ ...|++++.++||.+.++....... + ......+
T Consensus 113 ~~----~~e-~~~~~~~~Y~~sK~~~e~~~~------~~~~i~~~ilrp~~v~g~~~~~~~~----~------~~~~~~~ 171 (219)
T 3dqp_A 113 EK----WIG-AGFDALKDYYIAKHFADLYLT------KETNLDYTIIQPGALTEEEATGLID----I------NDEVSAS 171 (219)
T ss_dssp GG----CCS-HHHHHTHHHHHHHHHHHHHHH------HSCCCEEEEEEECSEECSCCCSEEE----E------SSSCCCC
T ss_pred Cc----ccc-cccccccHHHHHHHHHHHHHH------hccCCcEEEEeCceEecCCCCCccc----c------CCCcCCc
Confidence 21 101 111236789999999998876 3678999999999998875432211 0 0112346
Q ss_pred CCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 383 KSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 383 ~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.+++|+|+++++++.++. ..|+.|+++++.
T Consensus 172 i~~~Dva~~i~~~l~~~~---~~g~~~~i~~g~ 201 (219)
T 3dqp_A 172 NTIGDVADTIKELVMTDH---SIGKVISMHNGK 201 (219)
T ss_dssp EEHHHHHHHHHHHHTCGG---GTTEEEEEEECS
T ss_pred ccHHHHHHHHHHHHhCcc---ccCcEEEeCCCC
Confidence 789999999999997753 358888887664
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=195.71 Aligned_cols=236 Identities=16% Similarity=0.050 Sum_probs=160.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHH--cCCEEEEEEcChhHHHHHHHH---H--hhhcCCceEEEEEeeCCCHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAK--RKAKVIMACRDLDKCEKARKE---V--VLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~--~G~~Vil~~R~~~~~~~~~~~---l--~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
.+++++|+||||||+|+||++++++|++ +|++|++++|+.......... + ........+.++.+|++|.++++
T Consensus 5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence 4578899999999999999999999999 999999999976421100000 0 00111235688999999999888
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
++ ...++|+||||||.... +.++++..+++|+.++.++++++. +. ++
T Consensus 85 ~~------~~~~~D~vih~A~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~----------------------~~-~~ 131 (362)
T 3sxp_A 85 RL------EKLHFDYLFHQAAVSDT----TMLNQELVMKTNYQAFLNLLEIAR----------------------SK-KA 131 (362)
T ss_dssp HH------TTSCCSEEEECCCCCGG----GCCCHHHHHHHHTHHHHHHHHHHH----------------------HT-TC
T ss_pred Hh------hccCCCEEEECCccCCc----cccCHHHHHHHHHHHHHHHHHHHH----------------------Hc-CC
Confidence 76 23589999999996532 345678899999999999998873 22 24
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCc
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYD 366 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~ 366 (429)
+||++||.+.+ +.... +..+.....+...|+.||++.+.+++.++.+ +++..+.|+.+-.|...... ...
T Consensus 132 ~~V~~SS~~vy-g~~~~-~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~lR~~~v~Gp~~~~~~~~~~~~ 204 (362)
T 3sxp_A 132 KVIYASSAGVY-GNTKA-PNVVGKNESPENVYGFSKLCMDEFVLSHSND-----NVQVGLRYFNVYGPREFYKEKTASMV 204 (362)
T ss_dssp EEEEEEEGGGG-CSCCS-SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT-----SCEEEEEECSEESTTCGGGGGGSCHH
T ss_pred cEEEeCcHHHh-CCCCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc-----CCEEEEEeCceeCcCCCCCCcchhHH
Confidence 59999995544 33222 4455555667788999999999999888765 67777888777655432211 001
Q ss_pred hhHHHHHHhHHh---------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 SWLSTVVLKPLV---------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 ~~~~~~~~~~~~---------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+........+ ...+..++|+|+++++++..+ .+| .|+++++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~----~~g-~~~i~~~~~~ 259 (362)
T 3sxp_A 205 LQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQ----KSG-VYNVGYSQAR 259 (362)
T ss_dssp HHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCS----SCE-EEEESCSCEE
T ss_pred HHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcC----CCC-EEEeCCCCCc
Confidence 111111111111 112446999999999999654 258 7788776543
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=194.59 Aligned_cols=228 Identities=15% Similarity=0.058 Sum_probs=163.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
++||||||+|+||++++++|+++|++|++++|+.+...+.. ...+.++.+|++|.+ +.++++ .
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~-------~- 63 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIK-------G- 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCC-------C-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcC-------C-
Confidence 47999999999999999999999999999999765432211 235678899999976 544432 3
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||... ...+.++++..+++|+.++.++++++.. .+.++||++||.+.+..
T Consensus 64 d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~----------------------~~~~~iv~~SS~~vyg~ 119 (312)
T 3ko8_A 64 DVVFHFAANPE--VRLSTTEPIVHFNENVVATFNVLEWARQ----------------------TGVRTVVFASSSTVYGD 119 (312)
T ss_dssp SEEEECCSSCS--SSGGGSCHHHHHHHHHHHHHHHHHHHHH----------------------HTCCEEEEEEEGGGGCS
T ss_pred CEEEECCCCCC--chhhhhCHHHHHHHHHHHHHHHHHHHHH----------------------cCCCEEEEeCcHHHhCC
Confidence 99999999643 2345567788899999999999988742 24579999999776543
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-Hh---
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP-LV--- 378 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~-~~--- 378 (429)
....+..+.....+...|+.||++.+.+++.++.++ |+++++++||.+.++...... ...+...+... .+
T Consensus 120 -~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~ 193 (312)
T 3ko8_A 120 -ADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLF---GVRCLAVRYANVVGPRLRHGV--IYDFIMKLRRNPNVLEV 193 (312)
T ss_dssp -CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCCSSH--HHHHHHHHHHCTTEEEE
T ss_pred -CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccccCcCCCCCh--HHHHHHHHHhCCCCeEE
Confidence 233344455556778899999999999999999886 799999999999988644311 01111111111 11
Q ss_pred ------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++|+|+++++++..+......|+.|++.++...
T Consensus 194 ~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~~~ 238 (312)
T 3ko8_A 194 LGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAV 238 (312)
T ss_dssp C----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCSSCE
T ss_pred cCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCCCce
Confidence 112345999999999999652222346888888876543
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=190.73 Aligned_cols=230 Identities=13% Similarity=0.062 Sum_probs=160.3
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
++..++++|+||||||+|+||++++++|+++|++|++++|+.+. ..+.++.+|++|.+++.++++
T Consensus 12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~- 76 (347)
T 4id9_A 12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIM- 76 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHT-
T ss_pred CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHh-
Confidence 44667889999999999999999999999999999999998754 246678999999999888775
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|+|||+||.... +.+.++..+++|+.++.++++++. +.+.++||++
T Consensus 77 ------~~d~vih~A~~~~~----~~~~~~~~~~~nv~~~~~ll~a~~----------------------~~~~~~~V~~ 124 (347)
T 4id9_A 77 ------GVSAVLHLGAFMSW----APADRDRMFAVNVEGTRRLLDAAS----------------------AAGVRRFVFA 124 (347)
T ss_dssp ------TCSEEEECCCCCCS----SGGGHHHHHHHHTHHHHHHHHHHH----------------------HTTCSEEEEE
T ss_pred ------CCCEEEECCcccCc----chhhHHHHHHHHHHHHHHHHHHHH----------------------HcCCCeEEEE
Confidence 68999999997642 334558899999999999888875 3345799999
Q ss_pred cCcccccCC-CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc--cCCCCC-c----
Q psy12836 295 SSVAHKRGT-INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL--RHSSYY-D---- 366 (429)
Q Consensus 295 SS~~~~~~~-~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~--~~~~~~-~---- 366 (429)
||.+.+... ....++.+.....+...|+.||.+.+.+++.++.+ .|++++.+.|+.+.++.. ...... .
T Consensus 125 SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~ 201 (347)
T 4id9_A 125 SSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRS---GAMETVILRFSHTQDATELLDEDSFFSGPRFF 201 (347)
T ss_dssp EEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHH---SSSEEEEEEECEEECGGGTTCTTSSSHHHHHB
T ss_pred CCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHh---cCCceEEEccceEeecccccccccccCCCCcc
Confidence 997654331 22333445555667889999999999999999887 489999999998872110 000000 0
Q ss_pred ------------hhHHHHHHhHHhhh-------------cc----CCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 ------------SWLSTVVLKPLVWL-------------FI----KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 ------------~~~~~~~~~~~~~~-------------~~----~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+...+......+ -+ ..++|+|++++.++..+. ..|+.|+++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~---~~~~~~ni~~~~~~ 278 (347)
T 4id9_A 202 LRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPE---AAGGTFNLGADEPA 278 (347)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGG---GTTEEEEESCSSCE
T ss_pred cccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcc---cCCCeEEECCCCcc
Confidence 01111111111100 12 678999999999997653 35888888777543
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=185.59 Aligned_cols=241 Identities=13% Similarity=0.110 Sum_probs=161.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH----------------HHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK----------------ARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~----------------~~~~l~~~~~~~~v~~~~~D 201 (429)
...++++||||||+|+||++++++|+++|++|++++|+...... ...++.... ..++.++.+|
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D 85 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD 85 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence 34578899999999999999999999999999999987543211 111111111 2357788999
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhh
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWY 280 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~ 280 (429)
++|.++++++++.. ++|+||||||..... ...++++++..+++|+.|+.++++++.+.
T Consensus 86 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~---------------- 144 (404)
T 1i24_A 86 ICDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF---------------- 144 (404)
T ss_dssp TTSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred CCCHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh----------------
Confidence 99999999988875 689999999976432 12255667788999999999999887532
Q ss_pred hhcccCCCcEEEEEcCcccccCCCCcccCCCC--------------CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy12836 281 YVFQESAPSRIINVSSVAHKRGTINKEDLNSE--------------NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITV 346 (429)
Q Consensus 281 ~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~--------------~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrV 346 (429)
....+||++||.+.+... . .++.+. ....+...|+.||++.+.+++.++.++ |+++
T Consensus 145 -----~~~~~~V~~SS~~vyg~~-~-~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~ 214 (404)
T 1i24_A 145 -----GEECHLVKLGTMGEYGTP-N-IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRA 214 (404)
T ss_dssp -----CTTCEEEEECCGGGGCCC-S-SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEE
T ss_pred -----CCCcEEEEeCcHHHhCCC-C-CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCeE
Confidence 112599999997654322 1 112221 133556789999999999999998876 7999
Q ss_pred EEEeCCCccCCcccCC----------------CCCchhHHHHHHhHHh---------hhccCCHHHHHHHHHHHhcCCCc
Q psy12836 347 NAVHPGIVNTDILRHS----------------SYYDSWLSTVVLKPLV---------WLFIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 347 n~V~PG~v~T~~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~peevA~~iv~l~~~~~~ 401 (429)
++|+||.|.++..... ...-..+........+ ..-+..++|+|++++.++..+.
T Consensus 215 ~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~- 293 (404)
T 1i24_A 215 TDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA- 293 (404)
T ss_dssp EEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCC-
T ss_pred EEEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcc-
Confidence 9999999988754210 0000111111111100 0123468999999999996543
Q ss_pred ccCCc--eEEecCc
Q psy12836 402 ENVSG--KYFACYD 413 (429)
Q Consensus 402 ~~vtG--~~i~~~g 413 (429)
..| +.|++.+
T Consensus 294 --~~g~~~~yni~~ 305 (404)
T 1i24_A 294 --KAGEFRVFNQFT 305 (404)
T ss_dssp --CTTCEEEEEECS
T ss_pred --cCCCceEEEECC
Confidence 235 5666654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=184.30 Aligned_cols=193 Identities=19% Similarity=0.122 Sum_probs=149.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||+|+||++++++|+++|++|++++|+..+.. . ..+.++.+|++|.++++++++ +
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~--~~~~~~~~Dl~d~~~~~~~~~-------~ 63 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA---------E--AHEEIVACDLADAQAVHDLVK-------D 63 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC---------C--TTEEECCCCTTCHHHHHHHHT-------T
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc---------C--CCccEEEccCCCHHHHHHHHc-------C
Confidence 368999999999999999999999999999999875311 0 246788999999998888775 4
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+||||||... .++++..+++|+.++.++++++. +.+.++||++||.+...
T Consensus 64 ~d~vi~~a~~~~------~~~~~~~~~~n~~~~~~l~~a~~----------------------~~~~~~iv~~SS~~~~~ 115 (267)
T 3ay3_A 64 CDGIIHLGGVSV------ERPWNDILQANIIGAYNLYEAAR----------------------NLGKPRIVFASSNHTIG 115 (267)
T ss_dssp CSEEEECCSCCS------CCCHHHHHHHTHHHHHHHHHHHH----------------------HTTCCEEEEEEEGGGST
T ss_pred CCEEEECCcCCC------CCCHHHHHHHHHHHHHHHHHHHH----------------------HhCCCEEEEeCCHHHhC
Confidence 899999999752 24567889999999999998875 23457999999987654
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc-cCCcccCCCCCchhHHHHHHhHHhhh
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV-NTDILRHSSYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v-~T~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
......++.+.....+...|+.||++++.+++.++. ..|+++++++||.+ .++.. . . ...
T Consensus 116 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~gi~~~~lrp~~v~~~~~~-------~---~------~~~ 176 (267)
T 3ay3_A 116 YYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYH---KFDIETLNIRIGSCFPKPKD-------A---R------MMA 176 (267)
T ss_dssp TSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHH---TTCCCEEEEEECBCSSSCCS-------H---H------HHH
T ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH---HcCCCEEEEeceeecCCCCC-------C---C------eee
Confidence 432233444555555678999999999999998865 46899999999987 44320 0 0 113
Q ss_pred ccCCHHHHHHHHHHHhcCC
Q psy12836 381 FIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~ 399 (429)
.+.+++|+|++++.++..+
T Consensus 177 ~~~~~~dva~~~~~~~~~~ 195 (267)
T 3ay3_A 177 TWLSVDDFMRLMKRAFVAP 195 (267)
T ss_dssp HBCCHHHHHHHHHHHHHSS
T ss_pred ccccHHHHHHHHHHHHhCC
Confidence 4679999999999999765
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-21 Score=186.19 Aligned_cols=225 Identities=14% Similarity=0.020 Sum_probs=162.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHH-HcCCEEEEEEcChhH------------HHHHHHHHhhhcCCceEEEEEeeCC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELA-KRKAKVIMACRDLDK------------CEKARKEVVLESKNKYVLCRKCDLA 203 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La-~~G~~Vil~~R~~~~------------~~~~~~~l~~~~~~~~v~~~~~Dls 203 (429)
...+.+|+|||||||+|||+|++..|| ..|++|+++.+..+. .....+.+++.+ .+...+.||++
T Consensus 45 ~~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G--~~a~~i~~Dv~ 122 (401)
T 4ggo_A 45 AGAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREG--LYSVTIDGDAF 122 (401)
T ss_dssp TTSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHT--CCEEEEESCTT
T ss_pred cccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcC--CCceeEeCCCC
Confidence 345678999999999999999999999 689999999886432 223344454444 37889999999
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEccccCCCC------------------------------------CCCCHHHHHhh-
Q psy12836 204 SQESIRAFAEEVKKENKKINVLINNAGVSGCR------------------------------------KMLTEEKIELQ- 246 (429)
Q Consensus 204 ~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~------------------------------------~~~~~~~~~~~- 246 (429)
|.++++++++++++++|+||+||||+|..... ...+.++++.+
T Consensus 123 d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~ 202 (401)
T 4ggo_A 123 SDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATV 202 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHH
Confidence 99999999999999999999999999975210 01244555544
Q ss_pred --hcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHH
Q psy12836 247 --LGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQS 324 (429)
Q Consensus 247 --~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aS 324 (429)
|.....+.+...+...+.|. .++++|.+|+..+....+. .....++++
T Consensus 203 ~vMg~s~~s~w~~al~~a~lla--------------------~G~siva~SYiGse~t~P~----------Y~~G~mG~A 252 (401)
T 4ggo_A 203 KVMGGEDWERWIKQLSKEGLLE--------------------EGCITLAYSYIGPEATQAL----------YRKGTIGKA 252 (401)
T ss_dssp HHHSSHHHHHHHHHHHHTTCEE--------------------EEEEEEEEECCCCGGGHHH----------HTTSHHHHH
T ss_pred HHHhhhHHHHHHHHHHhhhccc--------------------CCceEEEEeccCcceeecC----------CCccHHHHH
Confidence 44445554555544444442 4589999999776543211 123578999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcC
Q psy12836 325 KLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 325 Kaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~ 398 (429)
|++++..++.|+.++++ +++|+++||.+.|......+.... +-.++.+++ +..++.|...+.+..|..+
T Consensus 253 KaaLEa~~r~La~eL~~--~~a~v~v~~a~vT~AssaIP~~pl--y~~~l~kvm-k~~g~heg~ieq~~rl~~~ 321 (401)
T 4ggo_A 253 KEHLEATAHRLNKENPS--IRAFVSVNKGLVTRASAVIPVIPL--YLASLFKVM-KEKGNHEGCIEQITRLYAE 321 (401)
T ss_dssp HHHHHHHHHHHHHHCTT--EEEEEEECCCCCCTTGGGSSSHHH--HHHHHHHHH-HHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--CcEEEEEcCccccchhhcCCCchH--HHHHHHHHH-HhcCCCCchHHHHHHHHHH
Confidence 99999999999999985 899999999999998877763222 222333332 4556777777777777754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=176.12 Aligned_cols=203 Identities=12% Similarity=0.043 Sum_probs=146.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++|+++||||+|+||++++++|+++|++|++++|+.++.... ...++.++.+|++|.++++++++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~------- 66 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA------- 66 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHc-------
Confidence 347999999999999999999999999999999998654211 02357788999999998887765
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
.+|++|||||..... ...++|+.++.++++++.+ .+.++||++||....
T Consensus 67 ~~d~vi~~a~~~~~~---------~~~~~n~~~~~~~~~~~~~----------------------~~~~~~v~~Ss~~~~ 115 (206)
T 1hdo_A 67 GQDAVIVLLGTRNDL---------SPTTVMSEGARNIVAAMKA----------------------HGVDKVVACTSAFLL 115 (206)
T ss_dssp TCSEEEECCCCTTCC---------SCCCHHHHHHHHHHHHHHH----------------------HTCCEEEEECCGGGT
T ss_pred CCCEEEECccCCCCC---------CccchHHHHHHHHHHHHHH----------------------hCCCeEEEEeeeeec
Confidence 479999999976431 1134788887777766542 245799999998654
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc-cCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV-NTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v-~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..... ...+...|+.+|++++.+.+. .|++++.++||.+ .++....... .. ...+.
T Consensus 116 ~~~~~--------~~~~~~~y~~~K~~~e~~~~~-------~~i~~~~lrp~~~~~~~~~~~~~~---~~-----~~~~~ 172 (206)
T 1hdo_A 116 WDPTK--------VPPRLQAVTDDHIRMHKVLRE-------SGLKYVAVMPPHIGDQPLTGAYTV---TL-----DGRGP 172 (206)
T ss_dssp SCTTC--------SCGGGHHHHHHHHHHHHHHHH-------TCSEEEEECCSEEECCCCCSCCEE---ES-----SSCSS
T ss_pred cCccc--------ccccchhHHHHHHHHHHHHHh-------CCCCEEEEeCCcccCCCCCcceEe---cc-----cCCCC
Confidence 32210 001567899999999988742 5899999999988 4443222110 00 01111
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+.+++|+|+++++++.++. .+|+.|.++++.
T Consensus 173 ~~~i~~~Dva~~~~~~~~~~~---~~g~~~~i~~g~ 205 (206)
T 1hdo_A 173 SRVISKHDLGHFMLRCLTTDE---YDGHSTYPSHQY 205 (206)
T ss_dssp CSEEEHHHHHHHHHHTTSCST---TTTCEEEEECCC
T ss_pred CCccCHHHHHHHHHHHhcCcc---ccccceeeeccc
Confidence 356789999999999997652 579999998874
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=186.96 Aligned_cols=238 Identities=17% Similarity=0.143 Sum_probs=162.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcC-------CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRK-------AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G-------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
...++|++||||||+|+||++++++|+++| ++|++++|+.+.... ....++.++.+|++|.++++
T Consensus 9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~ 80 (342)
T 2hrz_A 9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAE 80 (342)
T ss_dssp CSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHH
T ss_pred CCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHH
Confidence 456889999999999999999999999999 899999998643211 11246888999999999888
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
++++ +++|+||||||... ..+.++++..+++|+.|+.++++++.+...+ ....+
T Consensus 81 ~~~~------~~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~-----------------~~~~~ 134 (342)
T 2hrz_A 81 KLVE------ARPDVIFHLAAIVS---GEAELDFDKGYRINLDGTRYLFDAIRIANGK-----------------DGYKP 134 (342)
T ss_dssp HHHH------TCCSEEEECCCCCH---HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HCCCC
T ss_pred HHHh------cCCCEEEECCccCc---ccccccHHHHHHHHHHHHHHHHHHHHhcccc-----------------cCCCc
Confidence 8775 37999999999753 1235678889999999999999988764321 11247
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEe--CCCccCCcccCCCCC
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVH--PGIVNTDILRHSSYY 365 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~--PG~v~T~~~~~~~~~ 365 (429)
+||++||.+.+.+. ...++.+.....+...|++||++.+.+++.++.+.. ...+|++.|. ||.+.++.....
T Consensus 135 ~iv~~SS~~~~~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~--- 210 (342)
T 2hrz_A 135 RVVFTSSIAVFGAP-LPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFF--- 210 (342)
T ss_dssp EEEEEEEGGGCCSS-CCSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHH---
T ss_pred EEEEeCchHhhCCC-CCCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHH---
Confidence 99999998664332 222344444455678999999999999998887531 2336666666 776544321100
Q ss_pred chhHHHHHHhH----Hh-----hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 366 DSWLSTVVLKP----LV-----WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 366 ~~~~~~~~~~~----~~-----~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
..+....... ++ ...+.+++|+|++++.++..+......|..|++.|
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g 266 (342)
T 2hrz_A 211 -SNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPG 266 (342)
T ss_dssp -HHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCC
T ss_pred -HHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccccCCccEEEcCC
Confidence 0111111111 01 01145799999999999865522111355666643
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=187.89 Aligned_cols=225 Identities=13% Similarity=0.006 Sum_probs=152.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
...+++|+++||||+|+||++++++|+++|++|++++|+.....+ .+.. . .++.++.+|++|.++++++++..
T Consensus 16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~-~--~~~~~~~~Dl~d~~~~~~~~~~~- 88 (333)
T 2q1w_A 16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKD-H--PNLTFVEGSIADHALVNQLIGDL- 88 (333)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCC-C--TTEEEEECCTTCHHHHHHHHHHH-
T ss_pred eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhh-c--CCceEEEEeCCCHHHHHHHHhcc-
Confidence 456788999999999999999999999999999999997543211 1110 0 25778899999999999888762
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||..... +.++++ +++|+.++.++++++.+ .+.++||++||
T Consensus 89 ----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----------------------~~~~~iV~~SS 137 (333)
T 2q1w_A 89 ----QPDAVVHTAASYKDP---DDWYND--TLTNCVGGSNVVQAAKK----------------------NNVGRFVYFQT 137 (333)
T ss_dssp ----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----------------------TTCSEEEEEEE
T ss_pred ----CCcEEEECceecCCC---ccCChH--HHHHHHHHHHHHHHHHH----------------------hCCCEEEEECc
Confidence 689999999986532 334454 89999999999988863 24579999999
Q ss_pred cccccC---CCCcccCCCCCCCCCc-chhHHHHHHHHHHHHH-HHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 297 VAHKRG---TINKEDLNSENSYDPT-QAYNQSKLANVLFTRE-LAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 297 ~~~~~~---~~~~~~l~~~~~~~~~-~~Y~aSKaal~~l~~~-la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
.+.+.. .... ++.+.. .+. ..|+.||++.+.+++. ++ .+..+.|+.+-.+.. ... ..+.+..
T Consensus 138 ~~~~g~~~~~~~~-~~~E~~--~p~~~~Y~~sK~~~E~~~~~s~~--------~~~ilR~~~v~gp~~-~~~-~~~~~~~ 204 (333)
T 2q1w_A 138 ALCYGVKPIQQPV-RLDHPR--NPANSSYAISKSANEDYLEYSGL--------DFVTFRLANVVGPRN-VSG-PLPIFFQ 204 (333)
T ss_dssp GGGGCSCCCSSSB-CTTSCC--CCTTCHHHHHHHHHHHHHHHHTC--------CEEEEEESEEESTTC-CSS-HHHHHHH
T ss_pred HHHhCCCcccCCC-CcCCCC--CCCCCchHHHHHHHHHHHHhhhC--------CeEEEeeceEECcCC-cCc-HHHHHHH
Confidence 765430 1111 222222 344 7899999999999887 64 466777776655541 111 0011111
Q ss_pred HHHhH------HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKP------LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~------~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..... .+...+.+++|+|+++++++..+. |+.|+++++...
T Consensus 205 ~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~-----g~~~~v~~~~~~ 251 (333)
T 2q1w_A 205 RLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVG-----HGAYHFSSGTDV 251 (333)
T ss_dssp HHHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCC-----CEEEECSCSCCE
T ss_pred HHHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCC-----CCEEEeCCCCCc
Confidence 11110 112235689999999999997652 788888877543
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=187.15 Aligned_cols=230 Identities=15% Similarity=0.089 Sum_probs=163.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHH-HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKC-EKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|||||+|+||++++++|+++ |++|++++|+.... .+..+++ ...++.++.+|++|.++++++++.
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~----- 75 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI----LGDRVELVVGDIADAELVDKLAAK----- 75 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG----CSSSEEEEECCTTCHHHHHHHHTT-----
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh----ccCCeEEEECCCCCHHHHHHHhhc-----
Confidence 68999999999999999999999 89999999965211 1111111 123688899999999988887753
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+|+||||||.... ..+.++++..+++|+.++.++++++.+. + ++||++||.+.
T Consensus 76 --~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----------------------~-~~~v~~SS~~v 128 (348)
T 1oc2_A 76 --ADAIVHYAAESHN--DNSLNDPSPFIHTNFIGTYTLLEAARKY----------------------D-IRFHHVSTDEV 128 (348)
T ss_dssp --CSEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHH----------------------T-CEEEEEEEGGG
T ss_pred --CCEEEECCcccCc--cchhhCHHHHHHHHHHHHHHHHHHHHHh----------------------C-CeEEEecccce
Confidence 4999999997532 1234567788999999999999988642 2 49999999765
Q ss_pred ccCCCC-----------cccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 300 KRGTIN-----------KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 300 ~~~~~~-----------~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+..... ...+.+.....+...|+.||++.+.+++.++.++ |+++++++||.+.++....... .+.
T Consensus 129 yg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilrp~~v~G~~~~~~~~-~~~ 204 (348)
T 1oc2_A 129 YGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQHIEKF-IPR 204 (348)
T ss_dssp GCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTCCTTSH-HHH
T ss_pred eCCCcccccccccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeceeeCCCCCccch-HHH
Confidence 432110 0233444455677899999999999999999876 7999999999998886532110 011
Q ss_pred HHHHHHhH--H-------hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 369 LSTVVLKP--L-------VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 369 ~~~~~~~~--~-------~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+....... + ....+.+++|+|+++++++..+ .+|+.|+++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~g~~~~i~~~~~ 257 (348)
T 1oc2_A 205 QITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG----RMGETYLIGADGE 257 (348)
T ss_dssp HHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC----CTTCEEEECCSCE
T ss_pred HHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC----CCCCeEEeCCCCC
Confidence 11111111 1 1123557999999999998643 3688888887754
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=187.46 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=154.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
.+++||||+|+||++++++|+++|++|++++|+.++.+. +.. ..+.++.+|++|.++++++++ ++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~~----~~~~~~~~Dl~d~~~~~~~~~-------~~ 78 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LAY----LEPECRVAEMLDHAGLERALR-------GL 78 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GGG----GCCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hcc----CCeEEEEecCCCHHHHHHHHc-------CC
Confidence 489999999999999999999999999999998765432 111 256788999999998877764 58
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||... .+.++++..+++|+.++.++++++.+. +.++||++||.+.+..
T Consensus 79 d~vih~a~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----------------------~~~~~v~~SS~~~~~~ 132 (342)
T 2x4g_A 79 DGVIFSAGYYP----SRPRRWQEEVASALGQTNPFYAACLQA----------------------RVPRILYVGSAYAMPR 132 (342)
T ss_dssp SEEEEC----------------CHHHHHHHHHHHHHHHHHHH----------------------TCSCEEEECCGGGSCC
T ss_pred CEEEECCccCc----CCCCCHHHHHHHHHHHHHHHHHHHHHc----------------------CCCeEEEECCHHhhCc
Confidence 99999999753 234567889999999999999888642 3479999999877543
Q ss_pred CCCcccCCCCCCCCC----cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH-
Q psy12836 303 TINKEDLNSENSYDP----TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL- 377 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~----~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~- 377 (429)
........+.....+ ...|+.+|++.+.+++.++. . |+++++++||.+.++...... . ..+...+....
T Consensus 133 ~~~~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~---~-g~~~~ilrp~~v~g~~~~~~~-~-~~~~~~~~~~~~ 206 (342)
T 2x4g_A 133 HPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR---N-GLPVVIGIPGMVLGELDIGPT-T-GRVITAIGNGEM 206 (342)
T ss_dssp CTTSSCBCTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHH---T-TCCEEEEEECEEECSCCSSCS-T-THHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCccccccChHHHHHHHHHHHHHHHhh---c-CCcEEEEeCCceECCCCcccc-H-HHHHHHHHcCCC
Confidence 322111233333344 67899999999999999886 3 899999999999888651101 1 11222222111
Q ss_pred -----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 378 -----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 378 -----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
....+.+++|+|+++++++..+. .|+.|+++++.
T Consensus 207 ~~~~~~~~~~i~v~Dva~~~~~~~~~~~----~g~~~~v~~~~ 245 (342)
T 2x4g_A 207 THYVAGQRNVIDAAEAGRGLLMALERGR----IGERYLLTGHN 245 (342)
T ss_dssp CEEECCEEEEEEHHHHHHHHHHHHHHSC----TTCEEEECCEE
T ss_pred ccccCCCcceeeHHHHHHHHHHHHhCCC----CCceEEEcCCc
Confidence 11125689999999999997652 27788887775
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=186.02 Aligned_cols=241 Identities=15% Similarity=0.065 Sum_probs=161.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH------HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK------CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~------~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+|+++||||+|+||++++++|+++|++|++++|+... ..+..+++.... +.++.++.+|++|.+++++++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999999999885432 112222332211 135778899999999998888752
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||||||..... .+.++++..+++|+.++.++++++. +.+.++||++|
T Consensus 81 -----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~iv~~S 131 (348)
T 1ek6_A 81 -----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIMK----------------------AHGVKNLVFSS 131 (348)
T ss_dssp -----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEEE
T ss_pred -----CCCEEEECCCCcCcc--chhhchHHHHHHHHHHHHHHHHHHH----------------------HhCCCEEEEEC
Confidence 799999999975321 1345677889999999999887653 33457999999
Q ss_pred CcccccCCCCcccCCCCCCCCC-cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc----cCC-----CCC
Q psy12836 296 SVAHKRGTINKEDLNSENSYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL----RHS-----SYY 365 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~-~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~----~~~-----~~~ 365 (429)
|.+.+.. ....++.+.....+ ...|+.||++.+.+++.++.+ ..++++..+.|+.+-.+.. ... ...
T Consensus 132 S~~~~g~-~~~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~ 208 (348)
T 1ek6_A 132 SATVYGN-PQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNL 208 (348)
T ss_dssp EGGGGCS-CSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSH
T ss_pred cHHHhCC-CCCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc--CCCcceEEEeeccccCCCcccccCcCcccchhhH
Confidence 9765432 22223333333334 678999999999999999987 3469999999998765521 100 000
Q ss_pred chhHHHHHH-hH--Hh-------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 366 DSWLSTVVL-KP--LV-------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 366 ~~~~~~~~~-~~--~~-------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.+..... .. +. ...+..++|+|++++.++..+. ....|+.|++.++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~g~~~~ni~~~~~ 274 (348)
T 1ek6_A 209 MPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLK-EQCGCRIYNLGTGTG 274 (348)
T ss_dssp HHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHT-TTCCEEEEEECCSCC
T ss_pred HHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhccc-ccCCceEEEeCCCCC
Confidence 111111111 00 00 0123568999999999986431 112247788776543
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=193.05 Aligned_cols=235 Identities=14% Similarity=0.068 Sum_probs=160.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh---HHHHHHHHHhhhc-------CCceEEEEEeeCCCHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD---KCEKARKEVVLES-------KNKYVLCRKCDLASQE 206 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~---~~~~~~~~l~~~~-------~~~~v~~~~~Dls~~~ 206 (429)
.....+|+||||||+|+||++++++|+++|++|++++|+.+ ..+...+.+.... ...++.++.+|+++.+
T Consensus 64 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 64 LSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp SCCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 44567899999999999999999999999999999999987 3333333332211 1236889999999988
Q ss_pred HHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 207 SIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 207 sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
++. .++++|+||||||... ..++++..+++|+.++.++++++.+
T Consensus 144 ~l~--------~~~~~d~Vih~A~~~~-----~~~~~~~~~~~Nv~g~~~l~~aa~~----------------------- 187 (427)
T 4f6c_A 144 DVV--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ----------------------- 187 (427)
T ss_dssp CCC--------CSSCCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred cCC--------CcCCCCEEEECCcccC-----CCCCHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 776 4579999999999864 2356788899999999999998863
Q ss_pred CCcEEEEEcCcccccCCC-----CcccCCCCCC---CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 287 APSRIINVSSVAHKRGTI-----NKEDLNSENS---YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~-----~~~~l~~~~~---~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
..++||++||.+. +.. ....+.+... ..+...|+.||++.+.+++.++. .|+++++|.||.|-++.
T Consensus 188 ~~~~~v~~SS~~~--G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~ivRpg~v~G~~ 261 (427)
T 4f6c_A 188 HHARLIYVSTISV--GTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPY 261 (427)
T ss_dssp TTCEEEEEEEGGG--GSEECSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----TTCCEEEEEECCEESCS
T ss_pred cCCcEEEECchHh--CCCccCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----cCCCEEEEeCCeeecCC
Confidence 3479999999877 221 1112222221 23678999999999999988764 58999999999998776
Q ss_pred ccCCCCC---chhHH---HHHHh--HHh------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 359 LRHSSYY---DSWLS---TVVLK--PLV------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 359 ~~~~~~~---~~~~~---~~~~~--~~~------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....... ...+. ..... .++ ..-+.+++|+|+++++++..+. .|+.|+++++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~----~g~~~~l~~~~~~ 330 (427)
T 4f6c_A 262 NGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT----PQIIYHVLSPNKM 330 (427)
T ss_dssp SSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC----CCSEEEESCSCCE
T ss_pred CCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC----CCCEEEecCCCCC
Confidence 4432110 01111 11111 111 1125678999999999997653 6888888776544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=181.79 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=137.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+..|+++||||+||||++++++|+++| ++|++++|+.+++.+. ....+.++++|++|.++++++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~---- 87 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQAMQ---- 87 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHHHT----
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHHhc----
Confidence 3456899999999999999999999999 8999999998764321 12367889999999999988876
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.+|+||||||... + ...++.+++.|+ +.+.++||++||.
T Consensus 88 ---~~D~vv~~a~~~~---------~-----------~~~~~~~~~~~~------------------~~~~~~iV~iSS~ 126 (236)
T 3qvo_A 88 ---GQDIVYANLTGED---------L-----------DIQANSVIAAMK------------------ACDVKRLIFVLSL 126 (236)
T ss_dssp ---TCSEEEEECCSTT---------H-----------HHHHHHHHHHHH------------------HTTCCEEEEECCC
T ss_pred ---CCCEEEEcCCCCc---------h-----------hHHHHHHHHHHH------------------HcCCCEEEEEecc
Confidence 5699999998521 1 123567777777 4567899999998
Q ss_pred ccccCCCCcc-cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 298 AHKRGTINKE-DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 298 ~~~~~~~~~~-~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
....+..... ...+.....+...|..+|.+ +.+.||++++|+||++.++....... . ....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~gi~~~~vrPg~i~~~~~~~~~~----~---~~~~ 188 (236)
T 3qvo_A 127 GIYDEVPGKFVEWNNAVIGEPLKPFRRAADA-----------IEASGLEYTILRPAWLTDEDIIDYEL----T---SRNE 188 (236)
T ss_dssp CC----------------CGGGHHHHHHHHH-----------HHTSCSEEEEEEECEEECCSCCCCEE----E---CTTS
T ss_pred eecCCCCcccccchhhcccchHHHHHHHHHH-----------HHHCCCCEEEEeCCcccCCCCcceEE----e---ccCC
Confidence 7755432100 00111111223345544332 34679999999999998875433210 0 0000
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
...+++.+++|+|++++++++++. .+ .|+.+.++++.+..
T Consensus 189 ~~~~~~i~~~DvA~~i~~ll~~~~-~~-~g~~~~i~~~~~~~ 228 (236)
T 3qvo_A 189 PFKGTIVSRKSVAALITDIIDKPE-KH-IGENIGINQPGTDG 228 (236)
T ss_dssp CCSCSEEEHHHHHHHHHHHHHSTT-TT-TTEEEEEECSSCCC
T ss_pred CCCCcEECHHHHHHHHHHHHcCcc-cc-cCeeEEecCCCCCC
Confidence 112356799999999999998873 34 48888887775543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=178.74 Aligned_cols=221 Identities=14% Similarity=0.046 Sum_probs=157.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||+|+||++++++|+++|++|++++|+.++.... ...+.++.+|++|.++++++++ ++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~~ 68 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCK-------GA 68 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHT-------TC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhc-------CC
Confidence 7899999999999999999999999999999998754321 1368889999999999988875 47
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||.... ....+++|+.++.++++++. +.+.+++|++||.+...+
T Consensus 69 d~vi~~a~~~~~--------~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~Ss~~~~~~ 118 (227)
T 3dhn_A 69 DAVISAFNPGWN--------NPDIYDETIKVYLTIIDGVK----------------------KAGVNRFLMVGGAGSLFI 118 (227)
T ss_dssp SEEEECCCC--------------CCSHHHHHHHHHHHHHH----------------------HTTCSEEEEECCSTTSEE
T ss_pred CEEEEeCcCCCC--------ChhHHHHHHHHHHHHHHHHH----------------------HhCCCEEEEeCChhhccC
Confidence 999999986521 11278899999888887764 334579999999876654
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhcc
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFI 382 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
..... .+.....+...|+.+|++.+.+.+.++. ..|++++.++||.+.++............ ..+. .-....+
T Consensus 119 ~~~~~--~~~~~~~p~~~Y~~sK~~~e~~~~~~~~---~~~~~~~ilrp~~v~g~~~~~~~~~~~~~-~~~~-~~~~~~~ 191 (227)
T 3dhn_A 119 APGLR--LMDSGEVPENILPGVKALGEFYLNFLMK---EKEIDWVFFSPAADMRPGVRTGRYRLGKD-DMIV-DIVGNSH 191 (227)
T ss_dssp ETTEE--GGGTTCSCGGGHHHHHHHHHHHHHTGGG---CCSSEEEEEECCSEEESCCCCCCCEEESS-BCCC-CTTSCCE
T ss_pred CCCCc--cccCCcchHHHHHHHHHHHHHHHHHHhh---ccCccEEEEeCCcccCCCccccceeecCC-Cccc-CCCCCcE
Confidence 32211 1222334577899999999988888776 46899999999998766432211000000 0000 0000234
Q ss_pred CCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 383 KSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 383 ~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+++|+|++++.++.++. ..|+.+.+.+...++.
T Consensus 192 i~~~Dva~ai~~~l~~~~---~~g~~~~~~~~~~~~~ 225 (227)
T 3dhn_A 192 ISVEDYAAAMIDELEHPK---HHQERFTIGYLEHHHH 225 (227)
T ss_dssp EEHHHHHHHHHHHHHSCC---CCSEEEEEECCSCCC-
T ss_pred EeHHHHHHHHHHHHhCcc---ccCcEEEEEeehhccc
Confidence 689999999999998764 4799998888766553
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=183.81 Aligned_cols=231 Identities=15% Similarity=0.114 Sum_probs=162.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc---C---CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKR---K---AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~---G---~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+++||||+|+||++++++|+++ | ++|++++|+..... .+.+.......++.++.+|++|.+++++++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----- 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDAGLLAREL----- 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhhcccCCCeEEEEcCCCCHHHHHHHh-----
Confidence 5999999999999999999997 8 99999998642100 001111111236888999999998887766
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+++|+||||||.... ..+.++++..+++|+.++.++++++.+ .+.++||++||.
T Consensus 75 --~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~~l~~a~~~----------------------~~~~~~v~~SS~ 128 (337)
T 1r6d_A 75 --RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVD----------------------AGVGRVVHVSTN 128 (337)
T ss_dssp --TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHH----------------------TTCCEEEEEEEG
T ss_pred --cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHH----------------------cCCCEEEEecch
Confidence 478999999997532 123456778899999999999988863 234799999997
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP- 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~- 376 (429)
+.+... ...++.+.....+...|+.||++.+.+++.++.++ |++++.++||.+.++....... .+.+.......
T Consensus 129 ~vyg~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilrp~~v~G~~~~~~~~-~~~~~~~~~~~~ 203 (337)
T 1r6d_A 129 QVYGSI-DSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQHPEKL-IPLFVTNLLDGG 203 (337)
T ss_dssp GGGCCC-SSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCTTSH-HHHHHHHHHTTC
T ss_pred HHhCCC-CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH---CCCEEEEEeeeeECCCCCCCCh-HHHHHHHHhcCC
Confidence 654322 12233444445667899999999999999998875 7999999999998886432110 01111111111
Q ss_pred -Hh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 -LV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 -~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
++ ...+..++|+|+++++++..+ .+|+.|+++++..
T Consensus 204 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~----~~g~~~~v~~~~~ 247 (337)
T 1r6d_A 204 TLPLYGDGANVREWVHTDDHCRGIALVLAGG----RAGEIYHIGGGLE 247 (337)
T ss_dssp CEEEETTSCCEEEEEEHHHHHHHHHHHHHHC----CTTCEEEECCCCE
T ss_pred CcEEeCCCCeeEeeEeHHHHHHHHHHHHhCC----CCCCEEEeCCCCC
Confidence 11 112457899999999998643 2688888887754
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=186.01 Aligned_cols=227 Identities=16% Similarity=0.088 Sum_probs=146.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhc-CCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLES-KNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~-~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
||+||||||+|+||++++++|+++|++|+++.| +.+...... .+.... ...++.++.+|++|.++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVS-FLTNLPGASEKLHFFNADLSNPDSFAAAIE------ 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCH-HHHTSTTHHHHEEECCCCTTCGGGGHHHHT------
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHH-HHHhhhccCCceEEEecCCCCHHHHHHHHc------
Confidence 689999999999999999999999999999998 653211110 111100 01257788999999998887765
Q ss_pred CCeeEEEEccccCCCCCCCCHHH-HHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEK-IELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~-~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
.+|+|||||+... ...++ ++..+++|+.|++++++++.+. .+.++||++||.+
T Consensus 74 -~~d~vih~A~~~~----~~~~~~~~~~~~~nv~gt~~l~~aa~~~---------------------~~~~~iV~~SS~~ 127 (322)
T 2p4h_X 74 -GCVGIFHTASPID----FAVSEPEEIVTKRTVDGALGILKACVNS---------------------KTVKRFIYTSSGS 127 (322)
T ss_dssp -TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTC---------------------SSCCEEEEEEEGG
T ss_pred -CCCEEEEcCCccc----CCCCChHHHHHHHHHHHHHHHHHHHHhc---------------------CCccEEEEeccHH
Confidence 4699999997431 12222 4558999999999999887521 1357999999988
Q ss_pred cccCCCCcc-cCCCCCCC---------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 299 HKRGTINKE-DLNSENSY---------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 299 ~~~~~~~~~-~l~~~~~~---------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+..+..... .+.+.... +...+|+.||++.+.+++.++.+ .|+++++++||.+.+++..... ...
T Consensus 128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~g~~~~~~~--~~~ 202 (322)
T 2p4h_X 128 AVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ---NGIDVVTLILPFIVGRFVCPKL--PDS 202 (322)
T ss_dssp GTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEECEEESCCCSSSC--CHH
T ss_pred HcccCCCCCeecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh---cCCcEEEEcCCceECCCCCCCC--Cch
Confidence 655432111 11111100 11126999999887777666543 5899999999999998754321 111
Q ss_pred HHH---HHHh-HHhh--h--ccCCHHHHHHHHHHHhcCCCcccCCceEE
Q psy12836 369 LST---VVLK-PLVW--L--FIKSPRQGAQTIVYASLDPSLENVSGKYF 409 (429)
Q Consensus 369 ~~~---~~~~-~~~~--~--~~~~peevA~~iv~l~~~~~~~~vtG~~i 409 (429)
... .... .... . .+..++|+|+++++++..+. .+|+++
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~~g~~~ 248 (322)
T 2p4h_X 203 IEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSV---PGGRYN 248 (322)
T ss_dssp HHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSCC---CCEEEE
T ss_pred HHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCcC---CCCCEE
Confidence 111 0110 0101 1 26789999999999996542 568754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=190.52 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=158.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++++++||||+|+||++++++|+++| ++|++++|+.....+ .+. ....+.++.+|++|.++++++++
T Consensus 28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~---~~~~v~~~~~Dl~d~~~l~~~~~--- 98 (377)
T 2q1s_A 28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP---DHPAVRFSETSITDDALLASLQD--- 98 (377)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC---CCTTEEEECSCTTCHHHHHHCCS---
T ss_pred HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc---CCCceEEEECCCCCHHHHHHHhh---
Confidence 35788999999999999999999999999 999999998653211 111 12368889999999988766553
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC-CCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES-APSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~IV~vS 295 (429)
++|+||||||..... .+.++++..+++|+.++.++++++. +. +.++||++|
T Consensus 99 ----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~----------------------~~~~~~~~V~~S 150 (377)
T 2q1s_A 99 ----EYDYVFHLATYHGNQ--SSIHDPLADHENNTLTTLKLYERLK----------------------HFKRLKKVVYSA 150 (377)
T ss_dssp ----CCSEEEECCCCSCHH--HHHHCHHHHHHHHTHHHHHHHHHHT----------------------TCSSCCEEEEEE
T ss_pred ----CCCEEEECCCccCch--hhhhCHHHHHHHHHHHHHHHHHHHH----------------------HhCCCCeEEEeC
Confidence 789999999975321 2345677889999999998888763 33 457999999
Q ss_pred CcccccCCCCcccCC--CCC---CC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc---------c
Q psy12836 296 SVAHKRGTINKEDLN--SEN---SY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL---------R 360 (429)
Q Consensus 296 S~~~~~~~~~~~~l~--~~~---~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~---------~ 360 (429)
|.+.+.. ....++. +.. .. .+...|+.+|++.+.+++.++.+. |+++++++||.+.++.. .
T Consensus 151 S~~vyg~-~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~g~~~~~ 226 (377)
T 2q1s_A 151 AGCSIAE-KTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH---QLPTVRARFQNVYGPGEILGAGRWRGT 226 (377)
T ss_dssp EC---------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTCCTTCSSCCSS
T ss_pred CHHHcCC-CCCCCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCCCcccccccccC
Confidence 9765432 1111222 222 22 456789999999999999998875 79999999999988754 1
Q ss_pred CC---CCCchhHHHHHHhHHhh---------hccCCHHHHHHH-HHHHhcCCCcccCCceEEecCcccc
Q psy12836 361 HS---SYYDSWLSTVVLKPLVW---------LFIKSPRQGAQT-IVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 361 ~~---~~~~~~~~~~~~~~~~~---------~~~~~peevA~~-iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.. ....+.+...+....+. ..+..++|+|++ ++.++..+. +| .|+++++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~----~g-~~~i~~~~~ 290 (377)
T 2q1s_A 227 PATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP----GG-VYNIASGKE 290 (377)
T ss_dssp GGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT----TE-EEECCCCCC
T ss_pred cccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC----CC-eEEecCCCc
Confidence 10 00011111111111110 113458999999 999987652 68 888877643
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=187.98 Aligned_cols=234 Identities=14% Similarity=0.031 Sum_probs=162.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+.++|+++||||+|+||++++++|+++|++|++++|+..+.... .. ..+.++.+|++|.++++++++
T Consensus 24 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~--~~v~~~~~Dl~d~~~~~~~~~--- 92 (379)
T 2c5a_A 24 YWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------DM--FCDEFHLVDLRVMENCLKVTE--- 92 (379)
T ss_dssp SCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG------GG--TCSEEEECCTTSHHHHHHHHT---
T ss_pred cccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh------cc--CCceEEECCCCCHHHHHHHhC---
Confidence 3345678999999999999999999999999999999986543211 01 246788999999999888774
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||...... .+.++++..+++|+.++.++++++. +.+.++||++||
T Consensus 93 ----~~d~Vih~A~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~a~~----------------------~~~~~~~V~~SS 145 (379)
T 2c5a_A 93 ----GVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMIEAAR----------------------INGIKRFFYASS 145 (379)
T ss_dssp ----TCSEEEECCCCCCCHH-HHTTCHHHHHHHHHHHHHHHHHHHH----------------------HTTCSEEEEEEE
T ss_pred ----CCCEEEECceecCccc-ccccCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEee
Confidence 6899999999754211 1134577889999999999998875 234579999999
Q ss_pred cccccCCCC----cccCCCCC--CCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---Cch
Q psy12836 297 VAHKRGTIN----KEDLNSEN--SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDS 367 (429)
Q Consensus 297 ~~~~~~~~~----~~~l~~~~--~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~ 367 (429)
.+.+..... ...+.+.. ...+...|+.||++.+.+++.++.+. |+++++++||.+.++....... ...
T Consensus 146 ~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~G~~~~~~~~~~~~~~ 222 (379)
T 2c5a_A 146 ACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFGTWKGGREKAPA 222 (379)
T ss_dssp GGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCCSSSCCCHHH
T ss_pred hheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH---CCCEEEEEeCceeCcCCCcccccccHHH
Confidence 765432110 01122221 23456789999999999999998774 7999999999998876432210 011
Q ss_pred hHHHHHHhH---Hh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 368 WLSTVVLKP---LV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 368 ~~~~~~~~~---~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+...+... +. ...+..++|+|+++++++..+ .|+.|+++++..
T Consensus 223 ~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~-----~~~~~ni~~~~~ 276 (379)
T 2c5a_A 223 AFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEM 276 (379)
T ss_dssp HHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS-----CCSCEEECCCCC
T ss_pred HHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc-----CCCeEEeCCCCc
Confidence 121212111 11 112345999999999999654 355667766543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=172.53 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=134.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|+.+++.... ..+.++.+|++|.++ + .++++|
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~-------~~~~~d 63 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--S-------DLSDQN 63 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--H-------HHTTCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--h-------hhcCCC
Confidence 5999999999999999999999999999999987755431 256788999999877 1 225789
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+||||||.... ...+|+.++.. +++.++ +.+.+++|++||..+..+.
T Consensus 64 ~vi~~ag~~~~-----------~~~~~~~~~~~----l~~a~~------------------~~~~~~~v~~SS~~~~~~~ 110 (221)
T 3ew7_A 64 VVVDAYGISPD-----------EAEKHVTSLDH----LISVLN------------------GTVSPRLLVVGGAASLQID 110 (221)
T ss_dssp EEEECCCSSTT-----------TTTSHHHHHHH----HHHHHC------------------SCCSSEEEEECCCC-----
T ss_pred EEEECCcCCcc-----------ccchHHHHHHH----HHHHHH------------------hcCCceEEEEecceEEEcC
Confidence 99999998431 13456665444 444444 4457899999998877654
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccC
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIK 383 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
.......+.....+...|+.+|++.+.+ +.+.. ...|++++.|+||.+.++.... ..... ....+...-......
T Consensus 111 ~~~~~~~~~~~~~~~~~y~~~k~~~e~~-~~~~~--~~~gi~~~ivrp~~v~g~~~~~-~~~~~-~~~~~~~~~~~~~~i 185 (221)
T 3ew7_A 111 EDGNTLLESKGLREAPYYPTARAQAKQL-EHLKS--HQAEFSWTYISPSAMFEPGERT-GDYQI-GKDHLLFGSDGNSFI 185 (221)
T ss_dssp --------------CCCSCCHHHHHHHH-HHHHT--TTTTSCEEEEECSSCCCCC-----------------------CC
T ss_pred CCCccccccCCCCCHHHHHHHHHHHHHH-HHHHh--hccCccEEEEeCcceecCCCcc-CceEe-ccccceecCCCCceE
Confidence 3211111222223456699999998876 22322 1578999999999998772111 10000 000000000112367
Q ss_pred CHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 384 SPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 384 ~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+++|+|++++.++..++ ..|+.|+..+...+++.
T Consensus 186 ~~~Dva~~~~~~l~~~~---~~g~~~~~~~~~~~~~~ 219 (221)
T 3ew7_A 186 SMEDYAIAVLDEIERPN---HLNEHFTVAGKLEHHHH 219 (221)
T ss_dssp CHHHHHHHHHHHHHSCS---CTTSEEECCC-------
T ss_pred eHHHHHHHHHHHHhCcc---ccCCEEEECCCCccccc
Confidence 89999999999998764 46999999998877653
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=185.28 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=139.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHH-HcCCEEEEEEcChhH---------HHHHHHHHhhhcC---Cce---EEEEEeeCCCH
Q psy12836 142 GKIVIVTGANTGIGKAIARELA-KRKAKVIMACRDLDK---------CEKARKEVVLESK---NKY---VLCRKCDLASQ 205 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La-~~G~~Vil~~R~~~~---------~~~~~~~l~~~~~---~~~---v~~~~~Dls~~ 205 (429)
+++||||||+|+||++++++|+ ++|++|++++|+... .+...+.+..... ... +.++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4589999999999999999999 999999999997644 2333222222111 113 77889999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
+++++++++ ++++|+||||||..... .+.++++..+++|+.++.++++++. +
T Consensus 82 ~~~~~~~~~----~~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~a~~----------------------~ 133 (397)
T 1gy8_A 82 DFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAML----------------------L 133 (397)
T ss_dssp HHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------H
T ss_pred HHHHHHHHh----cCCCCEEEECCCccCcC--cchhhHHHHHHHHhHHHHHHHHHHH----------------------H
Confidence 998887764 45699999999976422 1345678899999999999988753 3
Q ss_pred CCCcEEEEEcCcccccCCCC-------cccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 286 SAPSRIINVSSVAHKRGTIN-------KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~-------~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
.+.++||++||.+.+ +... ..++.+.....+...|++||++.+.+++.++.++ |+++++++||.+..+.
T Consensus 134 ~~~~~iv~~SS~~v~-g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 134 HKCDKIIFSSSAAIF-GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNACGAH 209 (397)
T ss_dssp TTCCEEEEEEEGGGT-BSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECCC
T ss_pred hCCCEEEEECCHHHh-CCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH---CCcEEEEeccceeCCC
Confidence 345799999996554 3222 2334444444567899999999999999999886 7999999999887664
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=182.44 Aligned_cols=224 Identities=14% Similarity=0.079 Sum_probs=157.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+||||||+|+||++++++|+++|..|++..|+....+.. ...+.++.+|+++ +++.++++ ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~-------~~ 64 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLK-------GA 64 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHT-------TC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhc-------CC
Confidence 5799999999999999999999995555544444322111 2357888999999 88777764 68
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|++||+||... ...+.++++..+++|+.++.++++++. +.+.++||++||.+.+..
T Consensus 65 d~vih~a~~~~--~~~~~~~~~~~~~~nv~~~~~l~~~~~----------------------~~~~~~iv~~SS~~vyg~ 120 (313)
T 3ehe_A 65 EEVWHIAANPD--VRIGAENPDEIYRNNVLATYRLLEAMR----------------------KAGVSRIVFTSTSTVYGE 120 (313)
T ss_dssp SEEEECCCCCC--CC-CCCCHHHHHHHHHHHHHHHHHHHH----------------------HHTCCEEEEECCGGGGCS
T ss_pred CEEEECCCCCC--hhhhhhCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCeEEEeCchHHhCc
Confidence 99999999643 234556788899999999999988754 224579999999766533
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-Hh---
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP-LV--- 378 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~-~~--- 378 (429)
....+..+.....+...|+.||++.+.+++.++.++ |++++.+.||.+..+...... ...+...+... .+
T Consensus 121 -~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~ 194 (313)
T 3ehe_A 121 -AKVIPTPEDYPTHPISLYGASKLACEALIESYCHTF---DMQAWIYRFANVIGRRSTHGV--IYDFIMKLKRNPEELEI 194 (313)
T ss_dssp -CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEECSCEESTTCCCSH--HHHHHHHHHHCTTEEEE
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCEEEEeeccccCcCCCcCh--HHHHHHHHHcCCCceEE
Confidence 233334444455678899999999999999999875 799999999999877543210 01111111111 11
Q ss_pred ------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++|+|+++++++..+ ..|+.|++.++...
T Consensus 195 ~~~g~~~~~~i~v~Dva~a~~~~~~~~----~~~~~~ni~~~~~~ 235 (313)
T 3ehe_A 195 LGNGEQNKSYIYISDCVDAMLFGLRGD----ERVNIFNIGSEDQI 235 (313)
T ss_dssp STTSCCEECCEEHHHHHHHHHHHTTCC----SSEEEEECCCSCCE
T ss_pred eCCCCeEEeEEEHHHHHHHHHHHhccC----CCCceEEECCCCCe
Confidence 112456899999999999622 35788888776543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=174.46 Aligned_cols=217 Identities=13% Similarity=0.000 Sum_probs=142.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|+.+++.... ...+.++.+|++|.++ + .++++|
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~~D~~d~~~--~-------~~~~~d 64 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GATVATLVKEPLVLTE--A-------DLDSVD 64 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTTSEEEECCGGGCCH--H-------HHTTCS
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCCceEEecccccccH--h-------hcccCC
Confidence 5999999999999999999999999999999987765331 1257788999999877 1 235789
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+||||||...... ...+|+.++.+++ +.++ +.+ +++|++||.++..+.
T Consensus 65 ~vi~~ag~~~~~~---------~~~~n~~~~~~l~----~a~~------------------~~~-~~~v~~SS~~~~~~~ 112 (224)
T 3h2s_A 65 AVVDALSVPWGSG---------RGYLHLDFATHLV----SLLR------------------NSD-TLAVFILGSASLAMP 112 (224)
T ss_dssp EEEECCCCCTTSS---------CTHHHHHHHHHHH----HTCT------------------TCC-CEEEEECCGGGSBCT
T ss_pred EEEECCccCCCcc---------hhhHHHHHHHHHH----HHHH------------------HcC-CcEEEEecceeeccC
Confidence 9999999862111 1345666654444 4333 445 899999998776543
Q ss_pred CCcc--cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhc
Q psy12836 304 INKE--DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381 (429)
Q Consensus 304 ~~~~--~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
.... ...+.....+...|+.+|++.+.+ .......|++++.|+||.+.++...... .. ....+...-....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~----~~~~~~~~i~~~ivrp~~v~g~~~~~~~--~~-~~~~~~~~~~~~~ 185 (224)
T 3h2s_A 113 GADHPMILDFPESAASQPWYDGALYQYYEY----QFLQMNANVNWIGISPSEAFPSGPATSY--VA-GKDTLLVGEDGQS 185 (224)
T ss_dssp TCSSCGGGGCCGGGGGSTTHHHHHHHHHHH----HHHTTCTTSCEEEEEECSBCCCCCCCCE--EE-ESSBCCCCTTSCC
T ss_pred CCCccccccCCCCCccchhhHHHHHHHHHH----HHHHhcCCCcEEEEcCccccCCCcccCc--ee-cccccccCCCCCc
Confidence 2211 111111112367899999998844 2223467999999999999877321110 00 0000000011124
Q ss_pred cCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 382 IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 382 ~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+.+++|+|++++.++..+. ..|+.|.+.+...+++
T Consensus 186 ~i~~~DvA~~~~~~l~~~~---~~g~~~~~~~~~~~~~ 220 (224)
T 3h2s_A 186 HITTGNMALAILDQLEHPT---AIRDRIVVRDADLEHH 220 (224)
T ss_dssp BCCHHHHHHHHHHHHHSCC---CTTSEEEEEECC----
T ss_pred eEeHHHHHHHHHHHhcCcc---ccCCEEEEecCcchhc
Confidence 6799999999999998764 3688888877766554
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=179.28 Aligned_cols=227 Identities=13% Similarity=0.055 Sum_probs=149.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH-HHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE-KARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~-~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+++||||+|+||++++++|+++|++|++++|+.+... +..+.+.... ...++.++.+|++|.++++++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence 478999999999999999999999999999999865421 1111111110 1236788899999999999998876
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+||||||..... .+.++++..+++|+.++.++++++.+... + +.++||++||.+
T Consensus 78 --~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------------------~-~~~~iv~~SS~~ 134 (372)
T 1db3_A 78 --QPDEVYNLGAMSHVA--VSFESPEYTADVDAMGTLRLLEAIRFLGL------------------E-KKTRFYQASTSE 134 (372)
T ss_dssp --CCSEEEECCCCCTTT--TTTSCHHHHHHHHTHHHHHHHHHHHHTTC------------------T-TTCEEEEEEEGG
T ss_pred --CCCEEEECCcccCcc--ccccCHHHHHHHHHHHHHHHHHHHHHhCC------------------C-CCcEEEEeCChh
Confidence 689999999976432 24456778899999999999998865321 1 247999999976
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH---HHHh
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST---VVLK 375 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~---~~~~ 375 (429)
.+... ...++.+.....+...|+.||++.+.+++.++.++ |+.+..+.|..+..+...... ....+.. .+..
T Consensus 135 v~g~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~r~~~~~gp~~~~~~-~~~~~~~~~~~~~~ 209 (372)
T 1db3_A 135 LYGLV-QEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHESPRRGETF-VTRKITRAIANIAQ 209 (372)
T ss_dssp GGTTC-CSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTS-HHHHHHHHHHHHHT
T ss_pred hhCCC-CCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCeEEEEECCccCCCCCCcc-hhhHHHHHHHHHHc
Confidence 65332 22234444445667899999999999999999875 466666666555443221110 0000111 1111
Q ss_pred H---H-h------hhccCCHHHHHHHHHHHhcCC
Q psy12836 376 P---L-V------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 376 ~---~-~------~~~~~~peevA~~iv~l~~~~ 399 (429)
. . . ..-+..++|+|++++.++..+
T Consensus 210 g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~ 243 (372)
T 1db3_A 210 GLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE 243 (372)
T ss_dssp TSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS
T ss_pred CCCCceeecCCCceeeeeEHHHHHHHHHHHHhcC
Confidence 0 0 0 012457899999999998654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-21 Score=225.94 Aligned_cols=175 Identities=19% Similarity=0.151 Sum_probs=137.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHH---HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKC---EKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~---~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+|++|||||++|||+++|+.|+++|++ |++++|+..+. .+..+++... +.++.++.||++|.++++++++++.
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ--GVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT--TCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999996 88889986543 3334444332 3578899999999999999999987
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+ +|+||+||||||+.... .+++.++|++.+++|+.|++++.+++.+.|. ..|+||++
T Consensus 1961 ~-~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~--------------------~~g~iV~i 2019 (2512)
T 2vz8_A 1961 Q-LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACP--------------------ELDYFVIF 2019 (2512)
T ss_dssp H-HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCT--------------------TCCEEEEE
T ss_pred h-cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------cCCEEEEe
Confidence 4 79999999999986433 6678899999999999999999999988775 23899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCc
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v 354 (429)
||.++..+. ++..+|++||+++.+|++.++.+ |+...++..|.+
T Consensus 2020 SS~ag~~g~------------~g~~~Y~aaKaal~~l~~~rr~~----Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2020 SSVSCGRGN------------AGQANYGFANSAMERICEKRRHD----GLPGLAVQWGAI 2063 (2512)
T ss_dssp CCHHHHTTC------------TTCHHHHHHHHHHHHHHHHHHHT----TSCCCEEEECCB
T ss_pred cchhhcCCC------------CCcHHHHHHHHHHHHHHHHHHHC----CCcEEEEEccCc
Confidence 999998875 67889999999999999987764 777788887765
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=185.39 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=161.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC-CHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA-SQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls-~~~sv~~~~~~ 214 (429)
..++++|+|+||||+|+||++++++|+++ |++|++++|+.++...... ..++.++.+|++ +.++++++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~- 90 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVK- 90 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHH-
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhc-
Confidence 44578899999999999999999999998 9999999998765433211 136889999999 9999988886
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|+|||+||..... ...++.+..+++|+.++.++++++.. .+ +++|++
T Consensus 91 ------~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~----------------------~~-~~~v~~ 139 (372)
T 3slg_A 91 ------KCDVILPLVAIATPA--TYVKQPLRVFELDFEANLPIVRSAVK----------------------YG-KHLVFP 139 (372)
T ss_dssp ------HCSEEEECBCCCCHH--HHHHCHHHHHHHHTTTTHHHHHHHHH----------------------HT-CEEEEE
T ss_pred ------cCCEEEEcCccccHH--HHhhCHHHHHHHHHHHHHHHHHHHHH----------------------hC-CcEEEe
Confidence 469999999976432 12345667889999999888877642 23 799999
Q ss_pred cCcccccCCCCcccCCCCCCC-------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---
Q psy12836 295 SSVAHKRGTINKEDLNSENSY-------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--- 364 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~-------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--- 364 (429)
||.+.+ +.....++.+.... .+...|+.||.+.+.+++.++.+ |++++.+.|+.+-.+.......
T Consensus 140 SS~~vy-g~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~~~~ 214 (372)
T 3slg_A 140 STSEVY-GMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME----GLNFTLFRPFNWIGPGLDSIYTPKE 214 (372)
T ss_dssp CCGGGG-BSCCCSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECSEECSSCCCTTCSBS
T ss_pred CcHHHh-CCCCCCCCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC----CCCEEEEccccccCCCccccccccc
Confidence 996543 33222223222211 35568999999999999888764 8999999999997775432100
Q ss_pred -Cc---hhHHHHHHhH--Hh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 365 -YD---SWLSTVVLKP--LV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 365 -~~---~~~~~~~~~~--~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.. ..+...+... +. ...+..++|+|++++.++..+. ....|+.|++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~~ni~~~ 276 (372)
T 3slg_A 215 GSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSN-GVATGKIYNIGNP 276 (372)
T ss_dssp CSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCT
T ss_pred ccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhccc-CcCCCceEEeCCC
Confidence 00 1111111111 11 0124578999999999997653 2356888888873
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=179.02 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=158.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+|+++||||+|+||++++++|+++ |++|++++|+..+.. +.. .+.++.+|++|.+++++++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~-----~~~~~~~D~~d~~~~~~~~~~~---- 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VVN-----SGPFEVVNALDFNQIEHLVEVH---- 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HHH-----SSCEEECCTTCHHHHHHHHHHT----
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----ccC-----CCceEEecCCCHHHHHHHHhhc----
Confidence 478999999999999999999999 899999999865521 111 3457789999999998888754
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+|||+||..... ..++.+..+++|+.++.++++++. +.+.+++|++||.+.
T Consensus 68 -~~d~vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~SS~~~ 121 (312)
T 2yy7_A 68 -KITDIYLMAALLSAT---AEKNPAFAWDLNMNSLFHVLNLAK----------------------AKKIKKIFWPSSIAV 121 (312)
T ss_dssp -TCCEEEECCCCCHHH---HHHCHHHHHHHHHHHHHHHHHHHH----------------------TTSCSEEECCEEGGG
T ss_pred -CCCEEEECCccCCCc---hhhChHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEeccHHH
Confidence 689999999975321 235677889999999999888775 334579999999876
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh-
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV- 378 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~- 378 (429)
+.+........+.....+...|+.||++.+.+++.++.++ |++++.+.||.+-.+...............+...+.
T Consensus 122 ~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 198 (312)
T 2yy7_A 122 FGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY---GVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIAD 198 (312)
T ss_dssp CCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHT
T ss_pred hCCCCCCCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc---CCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcC
Confidence 5432221222333334567789999999999999998765 799999999988775422111000111111111110
Q ss_pred -----------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 379 -----------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 379 -----------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
..-+..++|+|++++.++..+....-.|+.|++.+
T Consensus 199 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~ 244 (312)
T 2yy7_A 199 KKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAA 244 (312)
T ss_dssp SEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCS
T ss_pred CCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCC
Confidence 01124679999999999976532111246667654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=175.86 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=158.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||+|+||++++++|+++|++|++++|+..... +. .+.++.+|++ .+++.++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~Dl~-~~~~~~~~~-------~ 62 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----IN------DYEYRVSDYT-LEDLINQLN-------D 62 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTT-------T
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----CC------ceEEEEcccc-HHHHHHhhc-------C
Confidence 478999999999999999999999999999999844322 11 4678899999 888777664 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||..... +.+..+++|+.++.++++++. +.+.+++|++||.+.+
T Consensus 63 ~d~Vih~a~~~~~~------~~~~~~~~n~~~~~~ll~a~~----------------------~~~~~r~v~~SS~~vy- 113 (311)
T 3m2p_A 63 VDAVVHLAATRGSQ------GKISEFHDNEILTQNLYDACY----------------------ENNISNIVYASTISAY- 113 (311)
T ss_dssp CSEEEECCCCCCSS------SCGGGTHHHHHHHHHHHHHHH----------------------HTTCCEEEEEEEGGGC-
T ss_pred CCEEEEccccCCCC------ChHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEEccHHHh-
Confidence 89999999986533 456678999999888888774 3345799999996543
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh---
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV--- 378 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--- 378 (429)
+.....++.+.....+...|+.+|.+.+.+++.++.+ .|++++.+.||.+-.+...... ....+...+....+
T Consensus 114 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~ 189 (311)
T 3m2p_A 114 SDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRK---KGLCIKNLRFAHLYGFNEKNNY-MINRFFRQAFHGEQLTL 189 (311)
T ss_dssp CCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHH---SCCEEEEEEECEEECSCC--CC-HHHHHHHHHHTCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH---cCCCEEEEeeCceeCcCCCCCC-HHHHHHHHHHcCCCeEE
Confidence 3333344455555567789999999999999998875 5899999999999877544221 01112121111111
Q ss_pred ------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++|+|++++.++..+. .|+.|++.++...
T Consensus 190 ~g~~~~~~~~v~v~Dva~a~~~~~~~~~----~~~~~~i~~~~~~ 230 (311)
T 3m2p_A 190 HANSVAKREFLYAKDAAKSVIYALKQEK----VSGTFNIGSGDAL 230 (311)
T ss_dssp SSBCCCCEEEEEHHHHHHHHHHHTTCTT----CCEEEEECCSCEE
T ss_pred ecCCCeEEceEEHHHHHHHHHHHHhcCC----CCCeEEeCCCCcc
Confidence 0123568899999999997653 6788888776543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=180.47 Aligned_cols=222 Identities=14% Similarity=0.083 Sum_probs=128.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+|+++||||+|+||++++++|+++|++|++++|+.+. + . ++.+|++|.++++++++.. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------------~--~--~~~~Dl~d~~~~~~~~~~~-----~ 60 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------------P--K--FEQVNLLDSNAVHHIIHDF-----Q 60 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHH-----C
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------------C--C--eEEecCCCHHHHHHHHHhh-----C
Confidence 6899999999999999999999999999999987543 1 1 5678999999999888765 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+||||||..... .+.++++..+++|+.++.++++++.+. + ++||++||.+.+.
T Consensus 61 ~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~----------------------~-~~~v~~SS~~v~~ 115 (315)
T 2ydy_A 61 PHVIVHCAAERRPD--VVENQPDAASQLNVDASGNLAKEAAAV----------------------G-AFLIYISSDYVFD 115 (315)
T ss_dssp CSEEEECC---------------------CHHHHHHHHHHHHH----------------------T-CEEEEEEEGGGSC
T ss_pred CCEEEECCcccChh--hhhcCHHHHHHHHHHHHHHHHHHHHHc----------------------C-CeEEEEchHHHcC
Confidence 89999999975432 245678889999999999999988631 2 4999999987754
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH-h--HH-
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL-K--PL- 377 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~-~--~~- 377 (429)
+ ...++.+.....+...|+.||++.+.+++.++.++ ..+|++.|. |...++.. ... ..+..... . .+
T Consensus 116 ~--~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~lR~~~v~-G~~~~~~~-~~~---~~~~~~~~~~~~~~~ 186 (315)
T 2ydy_A 116 G--TNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGA--AVLRIPILY-GEVEKLEE-SAV---TVMFDKVQFSNKSAN 186 (315)
T ss_dssp S--SSCSBCTTSCCCCCSHHHHHHHHHHHHHHHHCTTC--EEEEECSEE-CSCSSGGG-STT---GGGHHHHHCCSSCEE
T ss_pred C--CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCe--EEEeeeeee-CCCCcccc-cHH---HHHHHHHHhcCCCee
Confidence 4 22334444445567899999999999998875432 234444444 44333110 111 11212111 1 11
Q ss_pred ----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 378 ----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 378 ----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....+.+++|+|+++++++.++......|+.|+++++...+
T Consensus 187 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s 231 (315)
T 2ydy_A 187 MDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMT 231 (315)
T ss_dssp EECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBC
T ss_pred eccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCCCccc
Confidence 12245689999999999986431112467888888775443
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=175.88 Aligned_cols=232 Identities=14% Similarity=0.095 Sum_probs=161.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+++||||+|+||++++++|+++|++|++++|+..... +.+ . .++.++.+|++|.+++++++++ .++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~----~-~~~~~~~~D~~~~~~~~~~~~~-----~~~ 68 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DAI----T-EGAKFYNGDLRDKAFLRDVFTQ-----ENI 68 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGS----C-TTSEEEECCTTCHHHHHHHHHH-----SCE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hhc----C-CCcEEEECCCCCHHHHHHHHhh-----cCC
Confidence 68999999999999999999999999999998754321 111 1 1467789999999999888765 379
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+|||+||..... .+.++++..+++|+.++.++++++. +.+.+++|++||.+.+.
T Consensus 69 d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~----------------------~~~~~~~v~~Ss~~~~~- 123 (330)
T 2c20_A 69 EAVMHFAADSLVG--VSMEKPLQYYNNNVYGALCLLEVMD----------------------EFKVDKFIFSSTAATYG- 123 (330)
T ss_dssp EEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEECCGGGGC-
T ss_pred CEEEECCcccCcc--ccccCHHHHHHHHhHHHHHHHHHHH----------------------HcCCCEEEEeCCceeeC-
Confidence 9999999975421 1345678889999999999988764 33457999999976543
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-C---CCchhHHHHHHhH--
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-S---YYDSWLSTVVLKP-- 376 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~---~~~~~~~~~~~~~-- 376 (429)
.....++.+.....+...|+.||++.+.+++.++.++ |++++.+.||.+-.+..... . .....+...+...
T Consensus 124 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~ 200 (330)
T 2c20_A 124 EVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS---NLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVAL 200 (330)
T ss_dssp SCSSSSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS---SCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHT
T ss_pred CCCCCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHh
Confidence 2222334444445567899999999999999998764 89999999998877642110 0 0001111111110
Q ss_pred -----Hh-------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 -----LV-------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 -----~~-------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+. ..-+..++|+|++++.++..+... ..|..|++.++..
T Consensus 201 ~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~-~~~~~~ni~~~~~ 257 (330)
T 2c20_A 201 GQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNG-GESDFYNLGNGNG 257 (330)
T ss_dssp TSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTT-CCCEEEECCCTTC
T ss_pred hcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccC-CCCCeEEeCCCCC
Confidence 00 001345899999999998643211 2366777766543
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=178.84 Aligned_cols=237 Identities=13% Similarity=0.024 Sum_probs=157.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-----HHHHHHHHhhhcCCc-eEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-----CEKARKEVVLESKNK-YVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-----~~~~~~~l~~~~~~~-~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
|+||||||+|+||++++++|+++|++|++++|+.++ ++.....+.. .+. .+.++.+|++|.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN--VNKALMKLHYADLTDASSLRRWIDVI- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhcccc--ccccceEEEECCCCCHHHHHHHHHhc-
Confidence 789999999999999999999999999999998653 2211111110 012 5778899999999999998876
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||.... ..+.++++..+++|+.++.++++++.+...+ ..+.++||++||
T Consensus 106 ----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-----------------~~~~~~~v~~SS 162 (381)
T 1n7h_A 106 ----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTID-----------------SGRTVKYYQAGS 162 (381)
T ss_dssp ----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HCCCCEEEEEEE
T ss_pred ----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCc-----------------cCCccEEEEeCc
Confidence 68999999997542 1234667889999999999999999887642 223579999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--CchhHHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--YDSWLSTVVL 374 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--~~~~~~~~~~ 374 (429)
.+.+.... . ++.+.....+...|+.||++.+.+++.++.++ |+.+..+.|..+-.|....... ....+.....
T Consensus 163 ~~vyg~~~-~-~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~ 237 (381)
T 1n7h_A 163 SEMFGSTP-P-PQSETTPFHPRSPYAASKCAAHWYTVNYREAY---GLFACNGILFNHESPRRGENFVTRKITRALGRIK 237 (381)
T ss_dssp GGGGTTSC-S-SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHH
T ss_pred HHHhCCCC-C-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHH
Confidence 77654321 1 34444455667899999999999999999876 3444434433322221111000 0000111111
Q ss_pred hH----------HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 375 KP----------LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 375 ~~----------~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.. .....+..++|+|+++++++..+. ++.|+++++.
T Consensus 238 ~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-----~~~~~i~~~~ 283 (381)
T 1n7h_A 238 VGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK-----PDDYVVATEE 283 (381)
T ss_dssp HTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS-----CCEEEECCSC
T ss_pred cCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC-----CCeEEeeCCC
Confidence 10 011235679999999999996652 3456666554
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=176.99 Aligned_cols=224 Identities=12% Similarity=-0.005 Sum_probs=154.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH-HHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE-KARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~-~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.-.+++||||||+|+||++++++|+++|++|++++|+.++.. ...+.+. ....+.++.+|++|.++++++++.+
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~-- 85 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG---IEGDIQYEDGDMADACSVQRAVIKA-- 85 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHHH--
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc---ccCceEEEECCCCCHHHHHHHHHHc--
Confidence 345789999999999999999999999999999999865421 1111111 1236788899999999999998876
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcC
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSS 296 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS 296 (429)
++|+||||||..... .+.++++..+++|+.++.++++++.+. + .++||++||
T Consensus 86 ---~~d~Vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~----------------------~~~~~~v~~SS 138 (335)
T 1rpn_A 86 ---QPQEVYNLAAQSFVG--ASWNQPVTTGVVDGLGVTHLLEAIRQF----------------------SPETRFYQAST 138 (335)
T ss_dssp ---CCSEEEECCSCCCHH--HHTTSHHHHHHHHTHHHHHHHHHHHHH----------------------CTTSEEEEEEE
T ss_pred ---CCCEEEECccccchh--hhhhChHHHHHHHHHHHHHHHHHHHHh----------------------CCCCeEEEEeC
Confidence 689999999975321 123456788999999999999887531 3 379999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH---HH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST---VV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~---~~ 373 (429)
.+.+.+. ...++.+.....+...|+.||++.+.+++.++.++ |+.+..+.|+.+..+...... ....+.. ..
T Consensus 139 ~~v~g~~-~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~~~~~~-~~~~~~~~~~~~ 213 (335)
T 1rpn_A 139 SEMFGLI-QAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPLRGIEF-VTRKVTDAVARI 213 (335)
T ss_dssp GGGGCSC-SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTS-HHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc---CCcEEEEeeCcccCCCCCCCc-chHHHHHHHHHH
Confidence 7654332 22234444445567789999999999999998775 688888999887665432211 0000111 11
Q ss_pred HhHH-h---------hhccCCHHHHHHHHHHHhcCC
Q psy12836 374 LKPL-V---------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 374 ~~~~-~---------~~~~~~peevA~~iv~l~~~~ 399 (429)
.... + ..-+..++|+|++++.++..+
T Consensus 214 ~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~ 249 (335)
T 1rpn_A 214 KLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 249 (335)
T ss_dssp HTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred HcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcC
Confidence 1110 0 011346799999999999765
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=184.51 Aligned_cols=232 Identities=14% Similarity=0.069 Sum_probs=158.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++|+|+||||+|+||++++++|+++| ++|++++|+..... ...+ .+ +. +.+|+++.++++++++.
T Consensus 42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~--~~-~~~d~~~~~~~~~~~~~-- 110 (357)
T 2x6t_A 42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL----VD--LN-IADYMDKEDFLIQIMAG-- 110 (357)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT----TT--SC-CSEEEEHHHHHHHHHTT--
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc----cC--ce-EeeecCcHHHHHHHHhh--
Confidence 35678999999999999999999999999 99999999765421 0111 11 11 67899999888887753
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
..++++|+||||||.... +.++++..+++|+.++.++++++.+ .+. +||++||
T Consensus 111 ~~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~~ll~a~~~----------------------~~~-r~V~~SS 163 (357)
T 2x6t_A 111 EEFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLE----------------------REI-PFLYASS 163 (357)
T ss_dssp CCCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHH----------------------HTC-CEEEEEE
T ss_pred cccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHHHHHHHHHH----------------------cCC-eEEEEcc
Confidence 235689999999997643 3345778899999999999988864 134 9999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~~ 373 (429)
.+.+.. .....+.+.....+...|+.||++.+.+++.++.+ .|++++.|.||.+.++...... .....+...+
T Consensus 164 ~~v~g~-~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~ 239 (357)
T 2x6t_A 164 AATYGG-RTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQL 239 (357)
T ss_dssp GGGGCS-CSSCCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHH
T ss_pred hHHhCC-CCCCCcCCcCCCCCCChhHHHHHHHHHHHHHHHHH---cCCCEEEEecCeEECCCCCCCcccchHHHHHHHHH
Confidence 876432 22223334334455779999999999999998875 4899999999999877533110 0001111111
Q ss_pred HhH--H-------h-hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 374 LKP--L-------V-WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 374 ~~~--~-------~-~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
... + . ...+..++|+|+++++++..+. |+.|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~-----~~~~~i~~~~~ 287 (357)
T 2x6t_A 240 NNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV-----SGIFNLGTGRA 287 (357)
T ss_dssp HTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC-----CEEEEESCSCC
T ss_pred HcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC-----CCeEEecCCCc
Confidence 111 0 1 2234689999999999996652 67777776643
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=182.87 Aligned_cols=240 Identities=17% Similarity=0.169 Sum_probs=161.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc---CCEEEEEEcChhHHHHHHHHHhhhcC--------------CceEEEEE
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR---KAKVIMACRDLDKCEKARKEVVLESK--------------NKYVLCRK 199 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~---G~~Vil~~R~~~~~~~~~~~l~~~~~--------------~~~v~~~~ 199 (429)
....++|+|+||||+|+||++++++|+++ |++|++++|+.+.... .+++..... ..++.++.
T Consensus 68 ~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~ 146 (478)
T 4dqv_A 68 GPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVA 146 (478)
T ss_dssp CCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEE
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEE
Confidence 45678999999999999999999999999 9999999998765432 222322211 14789999
Q ss_pred eeCC------CHHHHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhcccc
Q psy12836 200 CDLA------SQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYS 273 (429)
Q Consensus 200 ~Dls------~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~ 273 (429)
+|++ +.++++++++ ++|+||||||.... +.++..+++|+.|+.++++++.
T Consensus 147 ~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt~~ll~aa~----------- 202 (478)
T 4dqv_A 147 GDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGTAELIRIAL----------- 202 (478)
T ss_dssp CCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHHHHHHHHHT-----------
T ss_pred eECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHHHHHHHHHH-----------
Confidence 9998 6667777665 46999999998643 3456788999999999888764
Q ss_pred ccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCC-----------CCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy12836 274 LCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY-----------DPTQAYNQSKLANVLFTRELAKRLEGT 342 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~-----------~~~~~Y~aSKaal~~l~~~la~el~~~ 342 (429)
+.+.+++|++||.+... ......+.+.... .....|+.||.+.+.+++.++.+.
T Consensus 203 -----------~~~~~~~V~iSS~~v~~-~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--- 267 (478)
T 4dqv_A 203 -----------TTKLKPFTYVSTADVGA-AIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC--- 267 (478)
T ss_dssp -----------SSSCCCEEEEEEGGGGT-TSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH---
T ss_pred -----------hCCCCeEEEEeehhhcC-ccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh---
Confidence 33456999999975432 2222222222111 112459999999999999998764
Q ss_pred CeEEEEEeCCCccCCcc-cCCCCCchhHHHHHHhHHhhh--------------------ccCCHHHHHHHHHHHhcCCCc
Q psy12836 343 GITVNAVHPGIVNTDIL-RHSSYYDSWLSTVVLKPLVWL--------------------FIKSPRQGAQTIVYASLDPSL 401 (429)
Q Consensus 343 gIrVn~V~PG~v~T~~~-~~~~~~~~~~~~~~~~~~~~~--------------------~~~~peevA~~iv~l~~~~~~ 401 (429)
|++++++.||.|-.+.. ........++...+......+ -+...+|+|++++.++.....
T Consensus 268 gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~ 347 (478)
T 4dqv_A 268 ALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG 347 (478)
T ss_dssp CCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-
T ss_pred CCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc
Confidence 79999999999976532 111111222322221111111 125679999999999864110
Q ss_pred -ccCCceEEecCcccc
Q psy12836 402 -ENVSGKYFACYDRYE 416 (429)
Q Consensus 402 -~~vtG~~i~~~gg~~ 416 (429)
....|+.|++.++..
T Consensus 348 ~~~~~~~~ynv~~~~~ 363 (478)
T 4dqv_A 348 SSLAGFATYHVMNPHD 363 (478)
T ss_dssp CCCCSEEEEEESCCCC
T ss_pred CCCCCCceEEecCCCC
Confidence 123577888876643
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=175.46 Aligned_cols=223 Identities=15% Similarity=0.149 Sum_probs=153.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++|||||+|+||++++++|+++ |++|++++|+..... .+.++.+|++|.+++++++++. +
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~~-----~ 62 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEKY-----S 62 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHHT-----T
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhhc-----C
Confidence 3899999999999999999998 899999998754321 2456789999999998888752 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||.... ...++++..+++|+.++.++++++. +.+.+++|++||.+.+.
T Consensus 63 ~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~a~~----------------------~~~~~~~v~~SS~~~~~ 117 (317)
T 3ajr_A 63 IDAIFHLAGILSA---KGEKDPALAYKVNMNGTYNILEAAK----------------------QHRVEKVVIPSTIGVFG 117 (317)
T ss_dssp CCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEEEEGGGCC
T ss_pred CcEEEECCcccCC---ccccChHHHhhhhhHHHHHHHHHHH----------------------HcCCCEEEEecCHHHhC
Confidence 8999999997532 1235677889999999999988765 23457999999987654
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHHHHHHhHHh--
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLSTVVLKPLV-- 378 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~~~~~~~~~-- 378 (429)
+........+.....+...|+.||++.+.+++.++.+. |++++++.|+.+-.+ ....... .......+...+.
T Consensus 118 ~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 193 (317)
T 3ajr_A 118 PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKF---GLDVRSLRYPGIISYKAEPTAGT-TDYAVEIFYYAVKRE 193 (317)
T ss_dssp TTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECSSSCCCSCS-STHHHHHHHHHHTTC
T ss_pred CCCCCCCccccccCCCCchHHHHHHHHHHHHHHHHHhc---CCeEEEEecCcEeccCCCCCCcc-hhHHHHHHHHHHhCC
Confidence 32111122233334567899999999999999888763 799999986654332 2111100 0111111111110
Q ss_pred ----------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 379 ----------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 379 ----------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
..-+...+|+|++++.++..+.....+|+.|++.+
T Consensus 194 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~ 238 (317)
T 3ajr_A 194 KYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA 238 (317)
T ss_dssp CEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS
T ss_pred CceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCC
Confidence 01123689999999999876643334567777765
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-19 Score=175.19 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=153.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-----HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-----CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-----~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|++|||||+|+||++++++|+++|++|++++|+.+. ++...+.+.. .....+.++.+|++|.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA-HIEGNMKLHYGDLTDSTCLVKIINEV-- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhcc-ccCCCceEEEccCCCHHHHHHHHHhc--
Confidence 789999999999999999999999999999998643 1111111000 01235788899999999999998876
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|+||||||.... ..+.++++..+++|+.++.++++++.+... .+.++||++||.
T Consensus 102 ---~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-------------------~~~~~iv~~SS~ 157 (375)
T 1t2a_A 102 ---KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGL-------------------INSVKFYQASTS 157 (375)
T ss_dssp ---CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-------------------TTTCEEEEEEEG
T ss_pred ---CCCEEEECCCcccc--cccccCHHHHHHHHHHHHHHHHHHHHHhCC-------------------CccceEEEecch
Confidence 68999999997532 123466788999999999999998864321 123799999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH---HHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST---VVL 374 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~---~~~ 374 (429)
+.+... ...++.+.....+...|+.||++.+.+++.++.++ |+.+..+.|+.+..+...... ....+.. .+.
T Consensus 158 ~~~~~~-~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~~~gp~~~~~~-~~~~~~~~~~~~~ 232 (375)
T 1t2a_A 158 ELYGKV-QEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESPRRGANF-VTRKISRSVAKIY 232 (375)
T ss_dssp GGTCSC-SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTS-HHHHHHHHHHHHH
T ss_pred hhhCCC-CCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEecccccCCCCCCCc-chHHHHHHHHHHH
Confidence 765432 22234444444567899999999999999999875 588888888766555322111 0000111 111
Q ss_pred hH-Hh---h------hccCCHHHHHHHHHHHhcCC
Q psy12836 375 KP-LV---W------LFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 375 ~~-~~---~------~~~~~peevA~~iv~l~~~~ 399 (429)
.. .+ . .-+..++|+|++++.++..+
T Consensus 233 ~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~ 267 (375)
T 1t2a_A 233 LGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 267 (375)
T ss_dssp HTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS
T ss_pred cCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcC
Confidence 10 00 0 12346899999999998655
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=173.31 Aligned_cols=229 Identities=13% Similarity=0.069 Sum_probs=157.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~~g 220 (429)
++++||||+|+||++++++|+++ |++|++++|+.++.+.. . ...++.++.+|++| .+.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~---~~~~~~~~~~D~~~~~~~~~~~~~------- 66 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L---NHPHFHFVEGDISIHSEWIEYHVK------- 66 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG----T---TCTTEEEEECCTTTCSHHHHHHHH-------
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh----h---cCCCeEEEeccccCcHHHHHhhcc-------
Confidence 47999999999999999999998 89999999987654321 1 12357889999998 456766665
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+||||||...+. ...++++..+++|+.++.++++++. +.+ ++||++||.+.+
T Consensus 67 ~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~-~~~v~~SS~~v~ 121 (345)
T 2bll_A 67 KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCV----------------------KYR-KRIIFPSTSEVY 121 (345)
T ss_dssp HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHH----------------------HTT-CEEEEECCGGGG
T ss_pred CCCEEEEcccccCcc--chhcCHHHHHHHHHHHHHHHHHHHH----------------------HhC-CeEEEEecHHHc
Confidence 369999999975421 1234567789999999988887764 223 799999997654
Q ss_pred cCCCCcccCCCCCCC-------CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC----Cc---
Q psy12836 301 RGTINKEDLNSENSY-------DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YD--- 366 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~-------~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~----~~--- 366 (429)
... ....+.+.... .+...|+.||++.+.+++.++.+. |+++++++||.+..+....... ..
T Consensus 122 g~~-~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~ 197 (345)
T 2bll_A 122 GMC-SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 197 (345)
T ss_dssp BTC-CCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSSCCCTTCSBSCBCHHH
T ss_pred CCC-CCCCcCCcccccccCcccCcccccHHHHHHHHHHHHHHHHhc---CCCEEEEcCCcccCCCcccccccccccccHH
Confidence 322 11122222110 234589999999999999998774 7999999999998775432100 00
Q ss_pred hhHHHHHHhHHh---------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 367 SWLSTVVLKPLV---------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 367 ~~~~~~~~~~~~---------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..+........+ ...+..++|+|++++.++..+. ...+|+.|++.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~g~~~~i~~~~ 254 (345)
T 2bll_A 198 TQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNPE 254 (345)
T ss_dssp HHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCTT
T ss_pred HHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhcc-ccCCCceEEeCCCC
Confidence 111111111100 1124579999999999996542 23578888888763
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=180.42 Aligned_cols=230 Identities=18% Similarity=0.159 Sum_probs=149.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH--HHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA--RKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~--~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
+|+||||||+|+||++++++|+++|++|+++.|+.++..+. ...+. . ..++.++++|++|.++++++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~------ 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E--LGDLKIFRADLTDELSFEAPIA------ 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G--GSCEEEEECCTTTSSSSHHHHT------
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C--CCcEEEEecCCCChHHHHHHHc------
Confidence 78999999999999999999999999999999986543211 11221 1 1257788999999888877764
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
++|+|||+||..... ..+..++.+++|+.|++++++++.+. .+.++||++||.++
T Consensus 80 -~~D~Vih~A~~~~~~---~~~~~~~~~~~nv~gt~~ll~aa~~~---------------------~~v~r~V~~SS~~~ 134 (338)
T 2rh8_A 80 -GCDFVFHVATPVHFA---SEDPENDMIKPAIQGVVNVMKACTRA---------------------KSVKRVILTSSAAA 134 (338)
T ss_dssp -TCSEEEEESSCCCC------------CHHHHHHHHHHHHHHHHC---------------------TTCCEEEEECCHHH
T ss_pred -CCCEEEEeCCccCCC---CCCcHHHHHHHHHHHHHHHHHHHHHc---------------------CCcCEEEEEecHHH
Confidence 479999999865211 11222458999999999999887631 12579999999875
Q ss_pred ccCCCCc---ccCCCCCC----C-----CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch
Q psy12836 300 KRGTINK---EDLNSENS----Y-----DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS 367 (429)
Q Consensus 300 ~~~~~~~---~~l~~~~~----~-----~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~ 367 (429)
..+.... ..+++... + +....|+.||++.+.+++.++.+ .|+++++|+||.+.++...... ..
T Consensus 135 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gi~~~~lrp~~v~Gp~~~~~~--~~ 209 (338)
T 2rh8_A 135 VTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE---NNIDLITVIPTLMAGSSLTSDV--PS 209 (338)
T ss_dssp HHHHHHTCSCCCCCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHH---HTCCEEEEEECEEESCCSSSSC--CH
T ss_pred eecCCcCCCCcccChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHH---cCCcEEEEeCCceECCCCCCCC--Cc
Confidence 4321100 01222110 0 01126999999999888877654 4799999999999998654321 11
Q ss_pred hHHHH---HHh-H--Hh------hh----ccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 368 WLSTV---VLK-P--LV------WL----FIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 368 ~~~~~---~~~-~--~~------~~----~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
..... ... . .. .+ .+..++|+|+++++++..+. .+|.++..++
T Consensus 210 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~~~~~~~~~~ 268 (338)
T 2rh8_A 210 SIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES---ASGRYICCAA 268 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT---CCEEEEECSE
T ss_pred hHHHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHHHcCCC---cCCcEEEecC
Confidence 11000 000 0 00 00 36789999999999996542 3576654443
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=172.31 Aligned_cols=179 Identities=17% Similarity=0.089 Sum_probs=127.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
++|||||+|+||++++++|+++|++|++++|......+..+.+.... +.++.++.+|++|.+++++++++. ++|
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~~D 75 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhcc-----CCC
Confidence 69999999999999999999999999999864321111112222111 125677899999999998887652 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+||||||..... ...++.+..+++|+.++.++++++. +.+.++||++||.+.+. .
T Consensus 76 ~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~iv~~SS~~~~g-~ 130 (338)
T 1udb_A 76 TVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAMR----------------------AANVKNFIFSSSATVYG-D 130 (338)
T ss_dssp EEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HHTCCEEEEEEEGGGGC-S
T ss_pred EEEECCccCccc--cchhcHHHHHHHHHHHHHHHHHHHH----------------------hcCCCeEEEEccHHHhC-C
Confidence 999999975321 1234556789999999999887643 22457999999976543 2
Q ss_pred CCcccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc
Q psy12836 304 INKEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN 355 (429)
Q Consensus 304 ~~~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~ 355 (429)
....++.+.... ++...|++||++++.+++.++.+. .|+++..+.|+.+-
T Consensus 131 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~ 181 (338)
T 1udb_A 131 NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPV 181 (338)
T ss_dssp CCSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS--TTCEEEEEEECEEE
T ss_pred CCCCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhc--CCCceEEEeeceec
Confidence 222223333222 236789999999999999999874 37999999886554
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=172.33 Aligned_cols=207 Identities=21% Similarity=0.222 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.-++++||||+|+||++++++|+++|++|++++|+ .+|++|.+++++++++.
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~----- 62 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEK----- 62 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhc-----
Confidence 45799999999999999999999999999999986 27999999999888765
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+||||||.... ..+.++++..+++|+.++.++++++.+ .+. +||++||.+.+
T Consensus 63 ~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~----------------------~~~-~iv~~SS~~v~ 117 (292)
T 1vl0_A 63 KPNVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYS----------------------VGA-EIVQISTDYVF 117 (292)
T ss_dssp CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----------------------HTC-EEEEEEEGGGS
T ss_pred CCCEEEECCccCCH--HHHhcCHHHHHHHHHHHHHHHHHHHHH----------------------cCC-eEEEechHHeE
Confidence 68999999997532 123467788999999999999988763 133 99999998665
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH--H-
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP--L- 377 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~--~- 377 (429)
.+. ...++.+.....+...|+.+|++.+.+++.++. .+..+.|+.+..+ .... ...+....... +
T Consensus 118 ~~~-~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~~~lR~~~v~G~-~~~~---~~~~~~~~~~~~~~~ 185 (292)
T 1vl0_A 118 DGE-AKEPITEFDEVNPQSAYGKTKLEGENFVKALNP-------KYYIVRTAWLYGD-GNNF---VKTMINLGKTHDELK 185 (292)
T ss_dssp CSC-CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEESS-SSCH---HHHHHHHHHHCSEEE
T ss_pred CCC-CCCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC-------CeEEEeeeeeeCC-CcCh---HHHHHHHHhcCCcEE
Confidence 432 222344444445677999999999999887753 3677888888755 2111 11111111111 1
Q ss_pred ----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 ----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+..++|+|+++++++..+ .|+.|+++++...
T Consensus 186 ~~~~~~~~~i~v~Dva~~~~~~~~~~-----~~~~~~i~~~~~~ 224 (292)
T 1vl0_A 186 VVHDQVGTPTSTVDLARVVLKVIDEK-----NYGTFHCTCKGIC 224 (292)
T ss_dssp EESSCEECCEEHHHHHHHHHHHHHHT-----CCEEEECCCBSCE
T ss_pred eecCeeeCCccHHHHHHHHHHHHhcC-----CCcEEEecCCCCc
Confidence 0123457999999999999654 5778888776543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-20 Score=172.50 Aligned_cols=198 Identities=15% Similarity=0.049 Sum_probs=143.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+|+++||||+|+||++++++|+++|+ +|++++|+.++ . ..++.++.+|+++.+++++++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~--~~~~~~~~~D~~~~~~~~~~~------ 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------E--HPRLDNPVGPLAELLPQLDGS------ 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------C--CTTEECCBSCHHHHGGGCCSC------
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------c--CCCceEEeccccCHHHHHHhh------
Confidence 468999999999999999999999998 99999998764 0 125777889998877665443
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+|+||||||.... +.++++..+++|+.++.++++++. +.+.++||++||..
T Consensus 66 ---~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----------------------~~~~~~~v~~Ss~~ 116 (215)
T 2a35_A 66 ---IDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRAL----------------------EMGARHYLVVSALG 116 (215)
T ss_dssp ---CSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEECCTT
T ss_pred ---hcEEEECeeeccc----cCCCHHHHHHhhHHHHHHHHHHHH----------------------HcCCCEEEEECCcc
Confidence 8999999997531 234677888999999988888764 23457999999977
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeE-EEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGIT-VNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIr-Vn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
... ++...|+.+|++++.+++. .|++ ++.++||.+.++...... .+.+.... .+.
T Consensus 117 ~~~--------------~~~~~y~~sK~~~e~~~~~-------~~~~~~~~vrp~~v~g~~~~~~~--~~~~~~~~-~~~ 172 (215)
T 2a35_A 117 ADA--------------KSSIFYNRVKGELEQALQE-------QGWPQLTIARPSLLFGPREEFRL--AEILAAPI-ARI 172 (215)
T ss_dssp CCT--------------TCSSHHHHHHHHHHHHHTT-------SCCSEEEEEECCSEESTTSCEEG--GGGTTCCC-C--
T ss_pred cCC--------------CCccHHHHHHHHHHHHHHH-------cCCCeEEEEeCceeeCCCCcchH--HHHHHHhh-hhc
Confidence 643 2356899999999988764 3798 999999999887532100 00000000 000
Q ss_pred h--hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 378 V--WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 378 ~--~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
. ...+.+++|+|++++.++..+. |..+++.++
T Consensus 173 ~~~~~~~i~~~Dva~~~~~~~~~~~-----~~~~~i~~~ 206 (215)
T 2a35_A 173 LPGKYHGIEACDLARALWRLALEEG-----KGVRFVESD 206 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCC-----SEEEEEEHH
T ss_pred cCCCcCcEeHHHHHHHHHHHHhcCC-----CCceEEcHH
Confidence 0 1234578999999999997652 555555544
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=169.62 Aligned_cols=204 Identities=15% Similarity=0.119 Sum_probs=148.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+++|++|++++|. ++|++|.+++++++++. ++|
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~-----~~d 58 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEI-----RPH 58 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhc-----CCC
Confidence 89999999999999999999999999999981 37999999999998876 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+||..... ...++++..+++|+.++.++++++.+. + .++|++||.+.+.+.
T Consensus 59 ~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~----------------------~-~~~v~~SS~~vy~~~ 113 (287)
T 3sc6_A 59 IIIHCAAYTKVD--QAEKERDLAYVINAIGARNVAVASQLV----------------------G-AKLVYISTDYVFQGD 113 (287)
T ss_dssp EEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHHHH----------------------T-CEEEEEEEGGGSCCC
T ss_pred EEEECCcccChH--HHhcCHHHHHHHHHHHHHHHHHHHHHc----------------------C-CeEEEEchhhhcCCC
Confidence 999999986421 122567788999999999999887531 2 389999998665332
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh----
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW---- 379 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---- 379 (429)
...++.+.....+...|+.+|.+.+.+++.++. +++.+.||.+-.+..... ...+........+.
T Consensus 114 -~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilR~~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~ 182 (287)
T 3sc6_A 114 -RPEGYDEFHNPAPINIYGASKYAGEQFVKELHN-------KYFIVRTSWLYGKYGNNF---VKTMIRLGKEREEISVVA 182 (287)
T ss_dssp -CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEECSSSCCH---HHHHHHHHTTCSEEEEEC
T ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-------CcEEEeeeeecCCCCCcH---HHHHHHHHHcCCCeEeec
Confidence 233455555566788999999999999887754 358899999877643221 11111111111111
Q ss_pred ---hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 380 ---LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 380 ---~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+..++|+|+++++++..+. |+.|++.++..
T Consensus 183 ~~~~~~i~v~Dva~~~~~~~~~~~-----~~~~~i~~~~~ 217 (287)
T 3sc6_A 183 DQIGSPTYVADLNVMINKLIHTSL-----YGTYHVSNTGS 217 (287)
T ss_dssp SCEECCEEHHHHHHHHHHHHTSCC-----CEEEECCCBSC
T ss_pred CcccCceEHHHHHHHHHHHHhCCC-----CCeEEEcCCCc
Confidence 123459999999999997653 45677776653
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=184.87 Aligned_cols=233 Identities=13% Similarity=0.073 Sum_probs=160.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH-HHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQES-IRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s-v~~~~~~i~ 216 (429)
.+++|+|+||||+|+||++++++|+++ |++|++++|+.++.... . ...++.++.+|+++.++ ++++++
T Consensus 312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~----~---~~~~v~~v~~Dl~d~~~~~~~~~~--- 381 (660)
T 1z7e_A 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L---NHPHFHFVEGDISIHSEWIEYHVK--- 381 (660)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGG----T---TCTTEEEEECCTTTCHHHHHHHHH---
T ss_pred hccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhh----c---cCCceEEEECCCCCcHHHHHHhhc---
Confidence 357899999999999999999999998 89999999987653221 1 12367889999998764 555554
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+ +++|++||
T Consensus 382 ----~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~----------------------~~~-~r~V~~SS 432 (660)
T 1z7e_A 382 ----KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCV----------------------KYR-KRIIFPST 432 (660)
T ss_dssp ----HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHHHHHHHHH----------------------HTT-CEEEEECC
T ss_pred ----CCCEEEECceecCcc--ccccCHHHHHHhhhHHHHHHHHHHH----------------------HhC-CEEEEEec
Confidence 469999999976432 1234567789999999988887764 223 79999999
Q ss_pred cccccCCCCcccCCCCCC-------CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-------
Q psy12836 297 VAHKRGTINKEDLNSENS-------YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS------- 362 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~-------~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~------- 362 (429)
.+.+... ....+.+... ..+...|+.||++.+.+++.++.+. |+++++++||.+.++.....
T Consensus 433 ~~vyg~~-~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRpg~v~Gp~~~~~~~~~~~~ 508 (660)
T 1z7e_A 433 SEVYGMC-SDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGS 508 (660)
T ss_dssp GGGGBTC-CSSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEESTTSSCHHHHTTTC
T ss_pred HHHcCCC-CCcccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECCCcccCCCccccccccccc
Confidence 7664332 1112222211 1345589999999999999998775 79999999999988764320
Q ss_pred CCCchhHHHHHHhHHh---------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 363 SYYDSWLSTVVLKPLV---------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 363 ~~~~~~~~~~~~~~~~---------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
......+...+....+ ...+.+++|+|+++++++..+. ...+|+.|+++++.
T Consensus 509 ~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~-~~~~g~~~ni~~~~ 569 (660)
T 1z7e_A 509 SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNPE 569 (660)
T ss_dssp SCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCGG
T ss_pred cchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCcc-ccCCCeEEEECCCC
Confidence 0000111111211111 0124569999999999996642 33578888888764
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=171.33 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=150.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+|+||||+|+||++++++|+++|++|++++|+..........+ ....++.++.+|+++..
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~---------- 88 (343)
T 2b69_A 22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL---------- 88 (343)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC----------
T ss_pred ccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh----------
Confidence 34567899999999999999999999999999999999753221111111 11235788899998742
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+.++|+||||||...... ..++.+..+++|+.++.++++++.+ .+ .++|++||
T Consensus 89 --~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~----------------------~~-~~~v~~SS 141 (343)
T 2b69_A 89 --YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKR----------------------VG-ARLLLAST 141 (343)
T ss_dssp --CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHH----------------------HT-CEEEEEEE
T ss_pred --hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHH----------------------hC-CcEEEECc
Confidence 457999999999754211 1234567889999999999887752 12 49999999
Q ss_pred cccccCCCCcccCCCC-----CCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-CCchhHH
Q psy12836 297 VAHKRGTINKEDLNSE-----NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-YYDSWLS 370 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~-----~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-~~~~~~~ 370 (429)
.+.+.. ....+..+. ....+...|+.||++.+.+++.++.+. |++++.+.||.+.++...... .....+.
T Consensus 142 ~~v~g~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~ 217 (343)
T 2b69_A 142 SEVYGD-PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPRMHMNDGRVVSNFI 217 (343)
T ss_dssp GGGGBS-CSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTCCTTCCCHHHHHH
T ss_pred HHHhCC-CCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEEcceeCcCCCCCcccHHHHHH
Confidence 765432 211122222 233456789999999999999998764 799999999999887543211 0001111
Q ss_pred HHHHhH--Hh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 371 TVVLKP--LV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 371 ~~~~~~--~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...... +. ...+..++|+|++++.++..+ .|+.+++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-----~~~~~~i~~~~ 266 (343)
T 2b69_A 218 LQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN-----VSSPVNLGNPE 266 (343)
T ss_dssp HHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS-----CCSCEEESCCC
T ss_pred HHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC-----CCCeEEecCCC
Confidence 111111 10 112447899999999998544 14456666554
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-19 Score=166.30 Aligned_cols=202 Identities=18% Similarity=0.152 Sum_probs=141.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+ +|++|++++|+.+. . . . +.+|++|.++++++++.+ ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~--------~---~--~---~~~Dl~~~~~~~~~~~~~-----~~d 59 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI--------Q---G--G---YKLDLTDFPRLEDFIIKK-----RPD 59 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC--------T---T--C---EECCTTSHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC--------C---C--C---ceeccCCHHHHHHHHHhc-----CCC
Confidence 59999999999999999999 58999999998742 0 1 1 689999999999998875 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+||||||.... ..+.++++..+++|+.++.++++++.+ .+ ++||++||.+.+.+.
T Consensus 60 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~----------------------~~-~~iv~~SS~~~~~~~ 114 (273)
T 2ggs_A 60 VIINAAAMTDV--DKCEIEKEKAYKINAEAVRHIVRAGKV----------------------ID-SYIVHISTDYVFDGE 114 (273)
T ss_dssp EEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----------------------TT-CEEEEEEEGGGSCSS
T ss_pred EEEECCcccCh--hhhhhCHHHHHHHhHHHHHHHHHHHHH----------------------hC-CeEEEEecceeEcCC
Confidence 99999997542 123467888999999999999988752 22 599999998876543
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh-----
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV----- 378 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----- 378 (429)
. .++.+.....+...|+.||++++.+++. +...++|++.|. | .+++. ..+........+
T Consensus 115 ~--~~~~e~~~~~~~~~Y~~sK~~~e~~~~~----~~~~~iR~~~v~-G--~~~~~-------~~~~~~~~~~~~~~~~~ 178 (273)
T 2ggs_A 115 K--GNYKEEDIPNPINYYGLSKLLGETFALQ----DDSLIIRTSGIF-R--NKGFP-------IYVYKTLKEGKTVFAFK 178 (273)
T ss_dssp S--CSBCTTSCCCCSSHHHHHHHHHHHHHCC----TTCEEEEECCCB-S--SSSHH-------HHHHHHHHTTCCEEEES
T ss_pred C--CCcCCCCCCCCCCHHHHHHHHHHHHHhC----CCeEEEeccccc-c--ccHHH-------HHHHHHHHcCCCEEeec
Confidence 2 1333444445677999999999998877 222334444444 3 12211 111111111100
Q ss_pred -hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 379 -WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 379 -~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
...+.+++|+|+++++++..+ .+| .|++++
T Consensus 179 ~~~~~~~~~dva~~i~~~~~~~----~~g-~~~i~~ 209 (273)
T 2ggs_A 179 GYYSPISARKLASAILELLELR----KTG-IIHVAG 209 (273)
T ss_dssp CEECCCBHHHHHHHHHHHHHHT----CCE-EEECCC
T ss_pred CCCCceEHHHHHHHHHHHHhcC----cCC-eEEECC
Confidence 234678999999999999654 145 667766
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-19 Score=170.99 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=154.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+++||||+|+||++++++|+++| ++|++++|+..... ...+.. +. +.+|+++.++++++++... ++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~------~~-~~~d~~~~~~~~~~~~~~~--~~~~ 69 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVD------LN-IADYMDKEDFLIQIMAGEE--FGDV 69 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHHT------SC-CSEEEEHHHHHHHHHTTCC--CSSC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcCc------ce-eccccccHHHHHHHHhccc--cCCC
Confidence 38999999999999999999999 89999999765421 011111 11 5789999888877765211 2369
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||.... +.++++..+++|+.++.++++++.+ .+. ++|++||.+.+..
T Consensus 70 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~----------------------~~~-~~v~~SS~~v~g~ 122 (310)
T 1eq2_A 70 EAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLE----------------------REI-PFLYASSAATYGG 122 (310)
T ss_dssp CEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHH----------------------HTC-CEEEEEEGGGGTT
T ss_pred cEEEECcccccC----cccCHHHHHHHHHHHHHHHHHHHHH----------------------cCC-eEEEEeeHHHhCC
Confidence 999999997643 2345677899999999999888753 134 9999999765432
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC---CCCchhHHHHHHh--HH
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS---SYYDSWLSTVVLK--PL 377 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~---~~~~~~~~~~~~~--~~ 377 (429)
.....+.+.....+...|+.||++.+.+++.++.+ .|++++.++||.+.++..... ......+...+.. ++
T Consensus 123 -~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~---~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
T 1eq2_A 123 -RTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESP 198 (310)
T ss_dssp -CCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----
T ss_pred -CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH---cCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCc
Confidence 22223333334455778999999999999988765 589999999999987754311 0000111111111 11
Q ss_pred -------h-hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 -------V-WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 -------~-~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
. ...+..++|+|++++.++..+. |+.|++.++...
T Consensus 199 ~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~-----~~~~~i~~~~~~ 241 (310)
T 1eq2_A 199 KLFEGSENFKRDFVYVGDVADVNLWFLENGV-----SGIFNLGTGRAE 241 (310)
T ss_dssp ---------CBCEEEHHHHHHHHHHHHHHCC-----CEEEEESCSCCB
T ss_pred EEecCCCcceEccEEHHHHHHHHHHHHhcCC-----CCeEEEeCCCcc
Confidence 1 1224568999999999996652 667777766443
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=164.76 Aligned_cols=221 Identities=13% Similarity=0.082 Sum_probs=152.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++++++||||+|+||++++++|+++|++|++++|+. .+|++|.+++++++++.
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~----- 54 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE----- 54 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhc-----
Confidence 467899999999999999999999999999988752 26999999999888765
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+||..... ....++.+..+++|+.++.++++++.+ .+.+++|++||.+.+
T Consensus 55 ~~d~vih~a~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~----------------------~~~~~~v~~SS~~vy 111 (321)
T 1e6u_A 55 RIDQVYLAAAKVGGI-VANNTYPADFIYQNMMIESNIIHAAHQ----------------------NDVNKLLFLGSSCIY 111 (321)
T ss_dssp CCSEEEECCCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHHHHH----------------------TTCCEEEEECCGGGS
T ss_pred CCCEEEEcCeecCCc-chhhhCHHHHHHHHHHHHHHHHHHHHH----------------------hCCCeEEEEccHHHc
Confidence 689999999975321 112345677899999999988887752 244699999997664
Q ss_pred cCCCCcccCCCCC----CCCC-cchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHH
Q psy12836 301 RGTINKEDLNSEN----SYDP-TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTV 372 (429)
Q Consensus 301 ~~~~~~~~l~~~~----~~~~-~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~ 372 (429)
... ...++.+.. ...+ ...|+.+|++.+.+++.++.+. |+++++++||.+-.+...... ...+.+...
T Consensus 112 g~~-~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~ 187 (321)
T 1e6u_A 112 PKL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRR 187 (321)
T ss_dssp CTT-CCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHH
T ss_pred CCC-CCCCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHH
Confidence 322 112222221 2223 3589999999999999998764 799999999998876543211 001112121
Q ss_pred HHh-------HHh-h------hccCCHHHHHHHHHHHhcCCCcc-----cCCceEEecCccc
Q psy12836 373 VLK-------PLV-W------LFIKSPRQGAQTIVYASLDPSLE-----NVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~-------~~~-~------~~~~~peevA~~iv~l~~~~~~~-----~vtG~~i~~~gg~ 415 (429)
+.. ++. . .-+..++|+|++++.++..+... ...|+.|++.++.
T Consensus 188 ~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~ 249 (321)
T 1e6u_A 188 FHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGV 249 (321)
T ss_dssp HHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSC
T ss_pred HHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCC
Confidence 211 111 0 01237899999999999765321 1236677776554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=165.61 Aligned_cols=226 Identities=16% Similarity=0.063 Sum_probs=151.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++++||||||+|+||++++++|+++|+ +. ......+..+.+|++|.+++.++++..
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~-------------~~~~~~~~~~~~D~~d~~~~~~~~~~~--- 60 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LP-------------GEDWVFVSSKDADLTDTAQTRALFEKV--- 60 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CT-------------TCEEEECCTTTCCTTSHHHHHHHHHHS---
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------cc-------------cccccccCceecccCCHHHHHHHHhhc---
Confidence 56789999999999999999999999998 10 000012334478999999999888763
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+|||+||..... ..+.++.+..+++|+.++.++++++. +.+.+++|++||.+
T Consensus 61 --~~d~Vih~A~~~~~~-~~~~~~~~~~~~~nv~gt~~ll~a~~----------------------~~~~~~~v~~SS~~ 115 (319)
T 4b8w_A 61 --QPTHVIHLAAMVGGL-FRNIKYNLDFWRKNVHMNDNVLHSAF----------------------EVGARKVVSCLSTC 115 (319)
T ss_dssp --CCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHH----------------------HTTCSEEEEECCGG
T ss_pred --CCCEEEECceecccc-cccccCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCeEEEEcchh
Confidence 689999999985321 11234556789999999998888764 33456999999986
Q ss_pred cccCCCCcccCCCCC----CC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHH
Q psy12836 299 HKRGTINKEDLNSEN----SY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLS 370 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~----~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~ 370 (429)
.+ +.....++.+.. .. +...+|+.||.+.+.+++.++.+. |++++.+.||.+-.+....... ..+.+.
T Consensus 116 vy-g~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~ 191 (319)
T 4b8w_A 116 IF-PDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY---GCTFTAVIPTNVFGPHDNFNIEDGHVLPGLI 191 (319)
T ss_dssp GS-CSSCCSSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCCCCTTTSCHHHHHH
T ss_pred hc-CCCCCCCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh---CCCEEEEeeccccCCCCCCCCccccccHHHH
Confidence 54 332222233321 22 223369999999999999998874 7999999999987775432111 011122
Q ss_pred HHH----HhH--Hhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 371 TVV----LKP--LVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 371 ~~~----~~~--~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+ ... +.. ..+..++|+|++++.++..+. ...|+.|++.++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~ni~~~~~~ 249 (319)
T 4b8w_A 192 HKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYN--EVEPIILSVGEEDEV 249 (319)
T ss_dssp HHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCC--CSSCEEECCCGGGCE
T ss_pred HHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccc--cCCceEEEecCCCce
Confidence 221 111 110 112478999999999997642 235777887765443
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=174.37 Aligned_cols=227 Identities=12% Similarity=0.004 Sum_probs=148.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
++++|+|+||||+|+||++++++|+++|++|++++|+........+.+........+.++.+|++
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--------------- 68 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS--------------- 68 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence 35689999999999999999999999999999999976521000001111001112333445554
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
++|+|||+||...... ..++.+..++ |+.++.++++++.. .+.++||++||.+
T Consensus 69 --~~d~vi~~a~~~~~~~--~~~~~~~~~~-n~~~~~~ll~a~~~----------------------~~v~~~v~~SS~~ 121 (321)
T 3vps_A 69 --DVRLVYHLASHKSVPR--SFKQPLDYLD-NVDSGRHLLALCTS----------------------VGVPKVVVGSTCE 121 (321)
T ss_dssp --TEEEEEECCCCCCHHH--HTTSTTTTHH-HHHHHHHHHHHHHH----------------------HTCCEEEEEEEGG
T ss_pred --cCCEEEECCccCChHH--HHhCHHHHHH-HHHHHHHHHHHHHH----------------------cCCCeEEEecCHH
Confidence 7899999999764211 1122344566 99998888887753 2357999999977
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCe-EEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGI-TVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gI-rVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
.+.. ....++.+.....+...|+.+|++.+.+++.++.+ .|+ +++.+.||.+-.+...... ..+.+........
T Consensus 122 v~~~-~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~ 196 (321)
T 3vps_A 122 VYGQ-ADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRA---SVAPEVGIVRFFNVYGPGERPDA-LVPRLCANLLTRN 196 (321)
T ss_dssp GGCS-CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHS---SSSCEEEEEEECEEECTTCCTTS-HHHHHHHHHHHHS
T ss_pred HhCC-CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH---cCCCceEEEEeccccCcCCCCCC-hHHHHHHHHHcCC
Confidence 5443 23334455555667889999999999999998875 578 9999999999877543311 1111222222111
Q ss_pred hh---------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 VW---------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ~~---------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+. ..+..++|+|+++++++..+. .| .|+++++...
T Consensus 197 ~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~----~g-~~~i~~~~~~ 240 (321)
T 3vps_A 197 ELPVEGDGEQRRDFTYITDVVDKLVALANRPL----PS-VVNFGSGQSL 240 (321)
T ss_dssp EEEEETTSCCEECEEEHHHHHHHHHHGGGSCC----CS-EEEESCSCCE
T ss_pred CeEEeCCCCceEceEEHHHHHHHHHHHHhcCC----CC-eEEecCCCcc
Confidence 11 113478999999999997663 37 8888776543
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=166.47 Aligned_cols=211 Identities=12% Similarity=0.053 Sum_probs=148.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++||||+|+||++++++|+ +|++|++++|+.. .+.+|++|.++++++++.. ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~-----~~d 56 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKL-----RPD 56 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHH-----CCS
T ss_pred eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhc-----CCC
Confidence 69999999999999999999 8999999999761 2468999999999888764 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+||..... ...++++..+++|+.++.++++++. +.+ .++|++||.+.+.+.
T Consensus 57 ~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~----------------------~~~-~~~v~~SS~~vy~~~ 111 (299)
T 1n2s_A 57 VIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAAN----------------------ETG-AWVVHYSTDYVFPGT 111 (299)
T ss_dssp EEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHT----------------------TTT-CEEEEEEEGGGSCCC
T ss_pred EEEECcccCCHh--hhhcCHHHHHHHHHHHHHHHHHHHH----------------------HcC-CcEEEEecccEEeCC
Confidence 999999975421 1234567789999999999888773 223 489999998664432
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh----
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW---- 379 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---- 379 (429)
...+..+.....+...|+.+|++.+.+++.++. +++.+.||.+.++..... ...+........+.
T Consensus 112 -~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~ 180 (299)
T 1n2s_A 112 -GDIPWQETDATSPLNVYGKTKLAGEKALQDNCP-------KHLIFRTSWVYAGKGNNF---AKTMLRLAKERQTLSVIN 180 (299)
T ss_dssp -TTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEECSSSCCH---HHHHHHHHHHCSEEEEEC
T ss_pred -CCCCCCCCCCCCCccHHHHHHHHHHHHHHHhCC-------CeEEEeeeeecCCCcCcH---HHHHHHHHhcCCCEEeec
Confidence 222344444445677999999999998877642 789999999988754311 11121211111111
Q ss_pred ---hccCCHHHHHHHHHHHhcCCCcccC-CceEEecCcccc
Q psy12836 380 ---LFIKSPRQGAQTIVYASLDPSLENV-SGKYFACYDRYE 416 (429)
Q Consensus 380 ---~~~~~peevA~~iv~l~~~~~~~~v-tG~~i~~~gg~~ 416 (429)
.-+..++|+|++++.++..+. ... .|+.|+++++..
T Consensus 181 ~~~~~~i~v~Dva~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 220 (299)
T 1n2s_A 181 DQYGAPTGAELLADCTAHAIRVAL-NKPEVAGLYHLVAGGT 220 (299)
T ss_dssp SCEECCEEHHHHHHHHHHHHHHHH-HCGGGCEEEECCCBSC
T ss_pred CcccCCeeHHHHHHHHHHHHHHhc-cccccCceEEEeCCCC
Confidence 112348999999999996541 122 467778777643
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=179.92 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=135.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..++++|+||||||+|+||++++++|+++|++|++++|+.....+..+++.... ..++.++.+|+++.+++++++++.
T Consensus 6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~- 83 (699)
T 1z45_A 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEY- 83 (699)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHS-
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhC-
Confidence 345788999999999999999999999999999999987643222222222111 135678899999999998888753
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++|+||||||...... ..+..+..+++|+.++.++++++. +.+.++||++||
T Consensus 84 ----~~D~Vih~A~~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a~~----------------------~~~~~~iV~~SS 135 (699)
T 1z45_A 84 ----KIDSVIHFAGLKAVGE--STQIPLRYYHNNILGTVVLLELMQ----------------------QYNVSKFVFSSS 135 (699)
T ss_dssp ----CCCEEEECCSCCCHHH--HHHSHHHHHHHHHHHHHHHHHHHH----------------------HHTCCEEEEEEE
T ss_pred ----CCCEEEECCcccCcCc--cccCHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEECc
Confidence 7899999999754211 123345678999999998876553 224579999999
Q ss_pred cccccCCC---CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC
Q psy12836 297 VAHKRGTI---NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357 (429)
Q Consensus 297 ~~~~~~~~---~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~ 357 (429)
.+.+.... ...++.+.....+...|+.||++++.+++.++.+. +.|+++..+.|+.+-.+
T Consensus 136 ~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 136 ATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp GGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEECC
T ss_pred HHHhCCCccccccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEeccccCC
Confidence 76543211 01123333344567799999999999999998875 46899999999877554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-19 Score=170.57 Aligned_cols=210 Identities=15% Similarity=0.081 Sum_probs=147.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++++++||| +|+||++++++|+++|++|++++|+.+++ ...+.++.+|++|.++++++++ +
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~------~ 62 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVH------L 62 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGG------G
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhc------C
Confidence 467899999 59999999999999999999999987642 1256788999999988877664 3
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+||.. ..+.+..+++|+.++.++++++. +.+.+++|++||.+.+
T Consensus 63 ~~d~vih~a~~~-------~~~~~~~~~~n~~~~~~ll~a~~----------------------~~~~~~~v~~SS~~vy 113 (286)
T 3gpi_A 63 RPEILVYCVAAS-------EYSDEHYRLSYVEGLRNTLSALE----------------------GAPLQHVFFVSSTGVY 113 (286)
T ss_dssp CCSEEEECHHHH-------HHC-----CCSHHHHHHHHHHTT----------------------TSCCCEEEEEEEGGGC
T ss_pred CCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHHHh----------------------hCCCCEEEEEcccEEE
Confidence 689999999963 24456788999999888887764 3355799999997654
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH----
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP---- 376 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~---- 376 (429)
+......+.+.....+...|+.+|.+.+.+ +.. ++++.+.||.+..+.... +...+...
T Consensus 114 -g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~--------~~~~ilR~~~v~G~~~~~-------~~~~~~~~~~~~ 176 (286)
T 3gpi_A 114 -GQEVEEWLDEDTPPIAKDFSGKRMLEAEAL-LAA--------YSSTILRFSGIYGPGRLR-------MIRQAQTPEQWP 176 (286)
T ss_dssp -CCCCSSEECTTSCCCCCSHHHHHHHHHHHH-GGG--------SSEEEEEECEEEBTTBCH-------HHHHTTCGGGSC
T ss_pred -cCCCCCCCCCCCCCCCCChhhHHHHHHHHH-Hhc--------CCeEEEecccccCCCchh-------HHHHHHhcccCC
Confidence 332333344555556778999999998877 432 789999999887664321 11111110
Q ss_pred --HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 --LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 --~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
-....+..++|+|+++++++..+. ....|+.|++.++..
T Consensus 177 ~~~~~~~~i~v~Dva~~~~~~~~~~~-~~~~~~~~~~~~~~~ 217 (286)
T 3gpi_A 177 ARNAWTNRIHRDDGAAFIAYLIQQRS-HAVPERLYIVTDNQP 217 (286)
T ss_dssp SSBCEECEEEHHHHHHHHHHHHHHHT-TSCCCSEEEECCSCC
T ss_pred CcCceeEEEEHHHHHHHHHHHHhhhc-cCCCCceEEEeCCCC
Confidence 011224578999999999997642 134577777776643
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=171.79 Aligned_cols=230 Identities=14% Similarity=0.080 Sum_probs=155.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHH---HHHHHHHhhh-------cCCceEEEEEeeCCCHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKC---EKARKEVVLE-------SKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~---~~~~~~l~~~-------~~~~~v~~~~~Dls~~~sv~~ 210 (429)
..|+||||||+|+||++++++|.++|++|++++|+..+. ....+.+... ....++.++.+|+++.+++.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 358999999999999999999999999999999987732 2232222211 11247899999999977776
Q ss_pred HHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 211 FAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
...++|+||||||... ....++..+++|+.++.++++++. + ..++
T Consensus 228 -------~~~~~D~Vih~Aa~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----------------------~-~~~~ 272 (508)
T 4f6l_B 228 -------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQ----------------------Q-HHAR 272 (508)
T ss_dssp -------CSSCCSEEEECCCC-------------CCHHHHHHHHHHHHHHHH----------------------T-TTCE
T ss_pred -------CccCCCEEEECCceec-----CCCCHHHHhhhHHHHHHHHHHHHH----------------------h-CCCc
Confidence 3468999999999764 224567788999999999988775 3 4579
Q ss_pred EEEEcCcccccCCC-----CcccCCCCCC---CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC
Q psy12836 291 IINVSSVAHKRGTI-----NKEDLNSENS---YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362 (429)
Q Consensus 291 IV~vSS~~~~~~~~-----~~~~l~~~~~---~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~ 362 (429)
+|++||.+. +.. ....+.+... ..+...|+.||.+.+.+++.++. .|++++.+.||.|..+.....
T Consensus 273 ~v~iSS~~v--G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~gi~~~ilRp~~v~G~~~~~~ 346 (508)
T 4f6l_B 273 LIYVSTISV--GTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYNGRW 346 (508)
T ss_dssp EEEEEESCT--TSEECTTCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH----TTCEEEEEEECCEESCSSSCC
T ss_pred EEEeCChhh--ccCCccCCcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH----cCCCEEEEecceeccCCCCCc
Confidence 999999876 221 1112222221 12567899999999999888653 589999999999977654332
Q ss_pred CC---CchhHHHHHHhH------Hh------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 363 SY---YDSWLSTVVLKP------LV------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 363 ~~---~~~~~~~~~~~~------~~------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.. ....+.. +... ++ ..-+..++|+|+++++++..+. .|+.|++.++...
T Consensus 347 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~----~~~~~nl~~~~~~ 411 (508)
T 4f6l_B 347 HMRNIKTNRFSM-VMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT----PQIIYHVLSPNKM 411 (508)
T ss_dssp CCTTCTTCHHHH-HHHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCC----SCSEEEESCSCEE
T ss_pred ccCCcchHHHHH-HHHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCC----CCCEEEeCCCCCC
Confidence 10 0111111 1111 11 1124568999999999997653 5778888776544
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=161.94 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=141.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
|+++||||+|+||++++++|+++ |++|++++|+.++...... ..+.++.+|++|.+++.++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~D~~d~~~l~~~~~------- 65 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD--------QGVEVRHGDYNQPESLQKAFA------- 65 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH--------TTCEEEECCTTCHHHHHHHTT-------
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh--------cCCeEEEeccCCHHHHHHHHh-------
Confidence 46999999999999999999999 9999999998876543321 146678999999988877764
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
++|+|||+||... . + ++|+.++.++++++. +.+.++||++||.+..
T Consensus 66 ~~d~vi~~a~~~~-----~-~------~~n~~~~~~l~~a~~----------------------~~~~~~~v~~Ss~~~~ 111 (287)
T 2jl1_A 66 GVSKLLFISGPHY-----D-N------TLLIVQHANVVKAAR----------------------DAGVKHIAYTGYAFAE 111 (287)
T ss_dssp TCSEEEECCCCCS-----C-H------HHHHHHHHHHHHHHH----------------------HTTCSEEEEEEETTGG
T ss_pred cCCEEEEcCCCCc-----C-c------hHHHHHHHHHHHHHH----------------------HcCCCEEEEECCCCCC
Confidence 4799999999631 1 1 568888877777663 3345799999997653
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-H--H
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK-P--L 377 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~-~--~ 377 (429)
. ....|+.+|.+.+.+.+. .|++++.+.||.+.++.... .+...... . .
T Consensus 112 ~---------------~~~~y~~~K~~~E~~~~~-------~~~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~ 163 (287)
T 2jl1_A 112 E---------------SIIPLAHVHLATEYAIRT-------TNIPYTFLRNALYTDFFVNE------GLRASTESGAIVT 163 (287)
T ss_dssp G---------------CCSTHHHHHHHHHHHHHH-------TTCCEEEEEECCBHHHHSSG------GGHHHHHHTEEEE
T ss_pred C---------------CCCchHHHHHHHHHHHHH-------cCCCeEEEECCEeccccchh------hHHHHhhCCceec
Confidence 1 123799999999988753 58999999999887654211 11111111 0 0
Q ss_pred ----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 ----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++|+|++++.++..+. .+|+.|+++++...
T Consensus 164 ~~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~i~~~~~~ 204 (287)
T 2jl1_A 164 NAGSGIVNSVTRNELALAAATVLTEEG---HENKTYNLVSNQPW 204 (287)
T ss_dssp SCTTCCBCCBCHHHHHHHHHHHHTSSS---CTTEEEEECCSSCB
T ss_pred cCCCCccCccCHHHHHHHHHHHhcCCC---CCCcEEEecCCCcC
Confidence 11235689999999999997652 36888888877544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=153.57 Aligned_cols=209 Identities=13% Similarity=0.054 Sum_probs=140.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.++++|||| |+||++++++|+++|++|++++|+.++...... ..+.++.+|++|.+ ..+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~------------~~~ 63 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS------------LDG 63 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC------------CTT
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc------------cCC
Confidence 378999998 999999999999999999999999887654332 25788899999832 457
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||...... . .++.++..+.+. ..+.+++|++||.+.+
T Consensus 64 ~d~vi~~a~~~~~~~-----~--------------~~~~l~~a~~~~----------------~~~~~~~v~~Ss~~vy- 107 (286)
T 3ius_A 64 VTHLLISTAPDSGGD-----P--------------VLAALGDQIAAR----------------AAQFRWVGYLSTTAVY- 107 (286)
T ss_dssp CCEEEECCCCBTTBC-----H--------------HHHHHHHHHHHT----------------GGGCSEEEEEEEGGGG-
T ss_pred CCEEEECCCcccccc-----H--------------HHHHHHHHHHhh----------------cCCceEEEEeecceec-
Confidence 899999999764321 0 123344444421 1345799999997544
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhc
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
+......+.+.....+...|+.+|.+.+.+.+.+ .|++++.+.||.+..+...............+...-...-
T Consensus 108 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (286)
T 3ius_A 108 GDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV------PNLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQVFS 181 (286)
T ss_dssp CCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHS------TTCCEEEEEECEEEBTTBSSSTTSSSSCCCEEECTTCCBC
T ss_pred CCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh------cCCCEEEEeccceECCCchHHHHHhcCCccccCCCCcccc
Confidence 3333333455555566788999999999888766 6899999999988766432211100000000000001123
Q ss_pred cCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 382 IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 382 ~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+|+|++++.++..+. .|+.|++.++...
T Consensus 182 ~i~v~Dva~a~~~~~~~~~----~g~~~~i~~~~~~ 213 (286)
T 3ius_A 182 RIHVEDIAQVLAASMARPD----PGAVYNVCDDEPV 213 (286)
T ss_dssp EEEHHHHHHHHHHHHHSCC----TTCEEEECCSCCB
T ss_pred eEEHHHHHHHHHHHHhCCC----CCCEEEEeCCCCc
Confidence 4578999999999997763 5778888776543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=158.61 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=132.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++||||+|+||++++++|+++ |++|++++|+.++...... ..+.++.+|++|.++++++++ +
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~-------~ 65 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QGITVRQADYGDEAALTSALQ-------G 65 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CCCeEEEcCCCCHHHHHHHHh-------C
Confidence 3899999999999999999998 9999999998876543221 146678999999988877664 5
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||... ..|+.++.++++++ . +.+.++||++||.+..
T Consensus 66 ~d~vi~~a~~~~--------------~~~~~~~~~l~~a~----~------------------~~~~~~~v~~Ss~~~~- 108 (286)
T 2zcu_A 66 VEKLLLISSSEV--------------GQRAPQHRNVINAA----K------------------AAGVKFIAYTSLLHAD- 108 (286)
T ss_dssp CSEEEECC----------------------CHHHHHHHHH----H------------------HHTCCEEEEEEETTTT-
T ss_pred CCEEEEeCCCCc--------------hHHHHHHHHHHHHH----H------------------HcCCCEEEEECCCCCC-
Confidence 799999998531 12555555555444 3 2245799999997653
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-HH---
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK-PL--- 377 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~-~~--- 377 (429)
. ....|+.+|.+.+.+.+. .|++++.++||++.+++... +...... .+
T Consensus 109 ~--------------~~~~y~~sK~~~e~~~~~-------~~~~~~ilrp~~~~~~~~~~-------~~~~~~~~~~~~~ 160 (286)
T 2zcu_A 109 T--------------SPLGLADEHIETEKMLAD-------SGIVYTLLRNGWYSENYLAS-------APAALEHGVFIGA 160 (286)
T ss_dssp T--------------CCSTTHHHHHHHHHHHHH-------HCSEEEEEEECCBHHHHHTT-------HHHHHHHTEEEES
T ss_pred C--------------CcchhHHHHHHHHHHHHH-------cCCCeEEEeChHHhhhhHHH-------hHHhhcCCceecc
Confidence 1 123799999999988753 47999999999887654311 1111110 11
Q ss_pred ---hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 378 ---VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 378 ---~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....+.+++|+|+++++++..+. .+|+.|+++++...
T Consensus 161 ~~~~~~~~i~~~Dva~~~~~~~~~~~---~~g~~~~i~~~~~~ 200 (286)
T 2zcu_A 161 AGDGKIASATRADYAAAAARVISEAG---HEGKVYELAGDSAW 200 (286)
T ss_dssp CTTCCBCCBCHHHHHHHHHHHHHSSS---CTTCEEEECCSSCB
T ss_pred CCCCccccccHHHHHHHHHHHhcCCC---CCCceEEEeCCCcC
Confidence 11235689999999999997653 36888888877443
|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-18 Score=131.57 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=61.9
Q ss_pred EEeeccccccccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeecCCCCcc---------eEEEEEee-
Q psy12836 11 VMITIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLTGPSSFN---------LVAFIVHV- 80 (429)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~---------~~~~~~~~- 80 (429)
...+.|+.+.||+|||++.+.+||+||+||+|| +|||+||+..+-... ....++||.| ++||+||.
T Consensus 3 ~~~~~~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~---~t~W~~P~~~~~~~~-~~~~~~LP~gWe~~~~~~G~~Yy~nh~t 78 (88)
T 1tk7_A 3 PEFHMDALGPLPDGWEKKIQSDNRVYFVNHKNR---TTQWEDPRTQGQEVS-LINEGPLPPGWEIRYTAAGERFFVDHNT 78 (88)
T ss_dssp CSSCSSTTSSSSSSCCEEEETTTEEEEEETTTT---EEEEESCCCTTTCCH-HHHSCSSCSSCEEEEETTTEEEEEETTT
T ss_pred CccCCCccCCCCCCcEEEECCCCCEEEEECCCC---CeEeecccccccccc-cccccccCCceEEEECCCCCEEEEECCC
Confidence 356788899999999999999999999999999 999999998761110 0124588888 99999999
Q ss_pred --ecccCccc
Q psy12836 81 --TIGMDTQL 88 (429)
Q Consensus 81 --~~~~dp~~ 88 (429)
+++.|||+
T Consensus 79 ~~ttw~~Prl 88 (88)
T 1tk7_A 79 RRTTFEDPRP 88 (88)
T ss_dssp TEEESSSSCC
T ss_pred CcEeCCCCCC
Confidence 99999985
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=153.55 Aligned_cols=208 Identities=15% Similarity=0.023 Sum_probs=135.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+|+++||||+|+||++++++|+++| ++|++++|+.++... +.+.. ..+.++.+|++|.++++++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~----~~~~~~~~D~~d~~~l~~~~~------- 71 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL----QGAEVVQGDQDDQVIMELALN------- 71 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH----TTCEEEECCTTCHHHHHHHHT-------
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH----CCCEEEEecCCCHHHHHHHHh-------
Confidence 5899999999999999999999999 999999999765431 22221 146778999999999888775
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
.+|+||||||..... ..+.|+.+ ++.+++.++ +.+.++||++||.. .
T Consensus 72 ~~d~vi~~a~~~~~~----------~~~~~~~~----~~~~~~aa~------------------~~gv~~iv~~S~~~-~ 118 (299)
T 2wm3_A 72 GAYATFIVTNYWESC----------SQEQEVKQ----GKLLADLAR------------------RLGLHYVVYSGLEN-I 118 (299)
T ss_dssp TCSEEEECCCHHHHT----------CHHHHHHH----HHHHHHHHH------------------HHTCSEEEECCCCC-H
T ss_pred cCCEEEEeCCCCccc----------cchHHHHH----HHHHHHHHH------------------HcCCCEEEEEcCcc-c
Confidence 479999999853210 12234444 444444444 33457999966543 3
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH--HHHh--H
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST--VVLK--P 376 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~--~~~~--~ 376 (429)
.+... ..+...|+.+|.+++.+.+. .|++++.++||.+.+++............. .+.. .
T Consensus 119 ~~~~~---------~~~~~~y~~sK~~~e~~~~~-------~gi~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 182 (299)
T 2wm3_A 119 KKLTA---------GRLAAAHFDGKGEVEEYFRD-------IGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTG 182 (299)
T ss_dssp HHHTT---------TSCCCHHHHHHHHHHHHHHH-------HTCCEEEEECCEEGGGGGTTTCCEECTTSSSEEECCCCT
T ss_pred cccCC---------CcccCchhhHHHHHHHHHHH-------CCCCEEEEeecHHhhhchhhcCCcccCCCCEEEEEecCC
Confidence 22100 01246799999999988764 379999999999888754322100000000 0000 0
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
-....+.+++|+|++++.++.++. ...|+.+.+.|
T Consensus 183 ~~~~~~i~~~Dva~~~~~~l~~~~--~~~g~~~~~~g 217 (299)
T 2wm3_A 183 DVPMDGMSVSDLGPVVLSLLKMPE--KYVGQNIGLST 217 (299)
T ss_dssp TSCEEEECGGGHHHHHHHHHHSHH--HHTTCEEECCS
T ss_pred CCccceecHHHHHHHHHHHHcChh--hhCCeEEEeee
Confidence 011235689999999999997642 23678888765
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=153.95 Aligned_cols=207 Identities=17% Similarity=0.111 Sum_probs=134.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee-CCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD-LASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D-ls~~~sv~~~~~~i~~~ 218 (429)
+++|+++||||+|+||++++++|+++|++|++++|+.++.. .+.+.. ...+.++.+| ++|.+++.++++
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~----- 72 (352)
T 1xgk_A 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMDTLFE----- 72 (352)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHHHHHT-----
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCHHHHHHHHh-----
Confidence 34688999999999999999999999999999999877642 122221 1247788999 999999888765
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcCc
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSSV 297 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS~ 297 (429)
.+|++|||++... .+.|..+ +.+++.++ +.+ .++||++||.
T Consensus 73 --~~d~Vi~~a~~~~-------------~~~~~~~-----~~l~~aa~------------------~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 73 --GAHLAFINTTSQA-------------GDEIAIG-----KDLADAAK------------------RAGTIQHYIYSSMP 114 (352)
T ss_dssp --TCSEEEECCCSTT-------------SCHHHHH-----HHHHHHHH------------------HHSCCSEEEEEECC
T ss_pred --cCCEEEEcCCCCC-------------cHHHHHH-----HHHHHHHH------------------HcCCccEEEEeCCc
Confidence 4699999987531 1224433 33444443 223 5799999997
Q ss_pred cc-ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-chh-HHH-HH
Q psy12836 298 AH-KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-DSW-LST-VV 373 (429)
Q Consensus 298 ~~-~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~~~-~~~-~~ 373 (429)
+. ..+. .+...|+.||++.+.+++.+ |++++.|+||++.+......... ... ... ..
T Consensus 115 ~~~~~~~------------~~~~~y~~sK~~~E~~~~~~-------gi~~~ivrpg~~g~~~~~~~~~~~~~~~~~~g~~ 175 (352)
T 1xgk_A 115 DHSLYGP------------WPAVPMWAPKFTVENYVRQL-------GLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTF 175 (352)
T ss_dssp CGGGTSS------------CCCCTTTHHHHHHHHHHHTS-------SSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCE
T ss_pred cccccCC------------CCCccHHHHHHHHHHHHHHc-------CCCEEEEecceecCCchhcccccccccccCCCce
Confidence 62 2221 23457999999999888652 79999999997754433211000 000 000 00
Q ss_pred -----HhHHhhhccCCH-HHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 374 -----LKPLVWLFIKSP-RQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 374 -----~~~~~~~~~~~p-eevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
...-...-+.++ +|+|++++.++.++. ....|+.|++.++
T Consensus 176 ~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~-~~~~g~~~~l~~~ 221 (352)
T 1xgk_A 176 EWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGP-QKWNGHRIALTFE 221 (352)
T ss_dssp EEEESSCTTSCEEEECHHHHHHHHHHHHHHHCH-HHHTTCEEEECSE
T ss_pred EEeeccCCCCceeeEecHHHHHHHHHHHHhCCc-hhhCCeEEEEecC
Confidence 000001124577 899999999996542 2235777777643
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-16 Score=150.95 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=126.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+++||||+|+||++++++|+++ |++|++++|+.++.... . ...+.++.+|++|.++++++++ ++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----~----~~~v~~~~~D~~d~~~l~~~~~-------~~ 66 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----W----RGKVSVRQLDYFNQESMVEAFK-------GM 66 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----G----BTTBEEEECCTTCHHHHHHHTT-------TC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----h----hCCCEEEEcCCCCHHHHHHHHh-------CC
Confidence 4899999999999999999998 99999999998764321 1 1257888999999998877764 67
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+||||||..... ..|+.++ +.+++.++ +.+.++||++||......
T Consensus 67 d~vi~~a~~~~~~------------~~~~~~~----~~l~~aa~------------------~~gv~~iv~~Ss~~~~~~ 112 (289)
T 3e48_A 67 DTVVFIPSIIHPS------------FKRIPEV----ENLVYAAK------------------QSGVAHIIFIGYYADQHN 112 (289)
T ss_dssp SEEEECCCCCCSH------------HHHHHHH----HHHHHHHH------------------HTTCCEEEEEEESCCSTT
T ss_pred CEEEEeCCCCccc------------hhhHHHH----HHHHHHHH------------------HcCCCEEEEEcccCCCCC
Confidence 9999999875321 1244444 34444444 345679999999543211
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH---Hhh
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP---LVW 379 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~---~~~ 379 (429)
. .|..+|.. ..+...+...|++++.+.||.+.+++... +....... .+.
T Consensus 113 ~----------------~~~~~~~~-----~~~e~~~~~~g~~~~ilrp~~~~~~~~~~-------~~~~~~~~~~~~~~ 164 (289)
T 3e48_A 113 N----------------PFHMSPYF-----GYASRLLSTSGIDYTYVRMAMYMDPLKPY-------LPELMNMHKLIYPA 164 (289)
T ss_dssp C----------------CSTTHHHH-----HHHHHHHHHHCCEEEEEEECEESTTHHHH-------HHHHHHHTEECCCC
T ss_pred C----------------CCccchhH-----HHHHHHHHHcCCCEEEEeccccccccHHH-------HHHHHHCCCEecCC
Confidence 1 12222211 12222333468999999999988775321 11111110 111
Q ss_pred ----hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 380 ----LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 380 ----~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+.+++|+|+++++++.++.. .|+.++++ +...
T Consensus 165 g~~~~~~i~~~Dva~~~~~~l~~~~~---~g~~~~~~-~~~~ 202 (289)
T 3e48_A 165 GDGRINYITRNDIARGVIAIIKNPDT---WGKRYLLS-GYSY 202 (289)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHCGGG---TTCEEEEC-CEEE
T ss_pred CCceeeeEEHHHHHHHHHHHHcCCCc---CCceEEeC-CCcC
Confidence 1256899999999999987632 28888887 5444
|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-16 Score=125.53 Aligned_cols=71 Identities=17% Similarity=-0.018 Sum_probs=58.3
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceecCccce-eeeecCCCCcc---------eEEEEEee---e
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTT-LKMLTGPSSFN---------LVAFIVHV---T 81 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lp~~---------~~~~~~~~---~ 81 (429)
.+++..||+|||++.+.+||+||+||+|| +|||+||+..+.... .....++||.| ++||+||. +
T Consensus 4 ~~~~~~LP~gWe~~~~~~Gr~YY~n~~t~---~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t 80 (90)
T 2kxq_A 4 GGSPPDLPEGYEQRTTQQGQVYFLHTQTG---VSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTT 80 (90)
T ss_dssp CSSCCSCCSSCEEEEETTTEEEEEETTTT---EEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEE
T ss_pred CCCCCCCCCCcEEEECCCCCEEEEECCCC---eEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcE
Confidence 46778999999999999999999999999 999999998751100 01123578887 99999999 9
Q ss_pred cccCccc
Q psy12836 82 IGMDTQL 88 (429)
Q Consensus 82 ~~~dp~~ 88 (429)
+..|||+
T Consensus 81 ~w~~Pr~ 87 (90)
T 2kxq_A 81 QFTDPRL 87 (90)
T ss_dssp ESSCTTT
T ss_pred ecCCCCc
Confidence 9999986
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-15 Score=145.33 Aligned_cols=206 Identities=13% Similarity=0.079 Sum_probs=134.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh----hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL----DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~----~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.+++|+||||+|+||++++++|+++|++|++++|+. ++... .+.+.. ..+.++.+|++|.+++.+++++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-~~~l~~----~~v~~~~~Dl~d~~~l~~~~~~~ 82 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKI-FKALED----KGAIIVYGLINEQEAMEKILKEH 82 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-HHHHHH----TTCEEEECCTTCHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHH-HHHHHh----CCcEEEEeecCCHHHHHHHHhhC
Confidence 5567899999999999999999999999999999976 33322 222221 25778899999999999888753
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~v 294 (429)
++|+|||+||.. |+.++.++++++.. .+ ..++|+
T Consensus 83 -----~~d~Vi~~a~~~-----------------n~~~~~~l~~aa~~----------------------~g~v~~~v~- 117 (346)
T 3i6i_A 83 -----EIDIVVSTVGGE-----------------SILDQIALVKAMKA----------------------VGTIKRFLP- 117 (346)
T ss_dssp -----TCCEEEECCCGG-----------------GGGGHHHHHHHHHH----------------------HCCCSEEEC-
T ss_pred -----CCCEEEECCchh-----------------hHHHHHHHHHHHHH----------------------cCCceEEee-
Confidence 689999999872 66676666666542 23 457764
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc-----hhH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD-----SWL 369 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~-----~~~ 369 (429)
|+ .+.. ..+.....+...|+.+|.+++.+.+. .|+.++.++||.+............ ...
T Consensus 118 S~-~g~~-------~~e~~~~~p~~~y~~sK~~~e~~l~~-------~g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~ 182 (346)
T 3i6i_A 118 SE-FGHD-------VNRADPVEPGLNMYREKRRVRQLVEE-------SGIPFTYICCNSIASWPYYNNIHPSEVLPPTDF 182 (346)
T ss_dssp SC-CSSC-------TTTCCCCTTHHHHHHHHHHHHHHHHH-------TTCCBEEEECCEESSCCCSCC-----CCCCSSC
T ss_pred cc-cCCC-------CCccCcCCCcchHHHHHHHHHHHHHH-------cCCCEEEEEecccccccCccccccccccCCCce
Confidence 32 2211 11122235667899999998877654 5799999999988665432221000 000
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.......-....+.+++|+|++++.++.+++ ..|+.+.+.|
T Consensus 183 ~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~---~~~~~~~i~g 223 (346)
T 3i6i_A 183 FQIYGDGNVKAYFVAGTDIGKFTMKTVDDVR---TLNKSVHFRP 223 (346)
T ss_dssp EEEETTSCCCEEEECHHHHHHHHHHHTTCGG---GTTEEEECCC
T ss_pred EEEccCCCceEEecCHHHHHHHHHHHHhCcc---ccCeEEEEeC
Confidence 0000000011235689999999999997763 2355566553
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-15 Score=144.76 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=136.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
+|+||||+|+||++++++|+++|+ +|+.++|+ +|.+++++++++ +
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~-------~ 47 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLK-------A 47 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHH-------C
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhcc-------C
Confidence 699999999999999999999998 77776654 677888877763 6
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC-cEEEEEcCccccc
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP-SRIINVSSVAHKR 301 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~IV~vSS~~~~~ 301 (429)
|+|||+||...+ ++.+..+++|+.++.++++++. +.+. .++|++||.....
T Consensus 48 d~Vih~a~~~~~------~~~~~~~~~n~~~~~~l~~a~~----------------------~~~~~~~~v~~Ss~~~~~ 99 (369)
T 3st7_A 48 DFIVHLAGVNRP------EHDKEFSLGNVSYLDHVLDILT----------------------RNTKKPAILLSSSIQATQ 99 (369)
T ss_dssp SEEEECCCSBCT------TCSTTCSSSCCBHHHHHHHHHT----------------------TCSSCCEEEEEEEGGGGS
T ss_pred CEEEECCcCCCC------CCHHHHHHHHHHHHHHHHHHHH----------------------HhCCCCeEEEeCchhhcC
Confidence 999999997653 3456678999999888887763 2233 4999999977542
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-CCCchhHHHHHHhHHh--
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS-SYYDSWLSTVVLKPLV-- 378 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~-- 378 (429)
...|+.+|++.+.+.+.++++. |+++..+.|+.+-.+..... ....+.+........+
T Consensus 100 ----------------~~~Y~~sK~~~E~~~~~~~~~~---g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (369)
T 3st7_A 100 ----------------DNPYGESKLQGEQLLREYAEEY---GNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQ 160 (369)
T ss_dssp ----------------CSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCC
T ss_pred ----------------CCCchHHHHHHHHHHHHHHHHh---CCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeE
Confidence 4589999999999999998874 68999999998877643321 1101111111111111
Q ss_pred ------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+..++|+|++++.++..+.. ..|+.+++.++...
T Consensus 161 ~~~~~~~~~~i~v~Dva~~~~~~l~~~~~--~~~~~~~i~~~~~~ 203 (369)
T 3st7_A 161 VNDRNVELTLNYVDDIVAEIKRAIEGTPT--IENGVPTVPNVFKV 203 (369)
T ss_dssp CSCTTCEEEEEEHHHHHHHHHHHHHTCCC--EETTEECCSCCEEE
T ss_pred ecCCCeEEEEEEHHHHHHHHHHHHhCCcc--cCCceEEeCCCCce
Confidence 01234689999999999977632 13677777765433
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=143.26 Aligned_cols=202 Identities=13% Similarity=0.070 Sum_probs=127.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-------hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-------DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+|+++||||+|+||++++++|+++|++|++++|+. ++.+.. +++.. ..+.++++|++|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~----~~v~~v~~D~~d~~~l~~~~~- 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS----LGVILLEGDINDHETLVKAIK- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH----TTCEEEECCTTCHHHHHHHHT-
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh----CCCEEEEeCCCCHHHHHHHHh-
Confidence 57899999999999999999999999999999986 444332 22221 146788999999998887775
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIIN 293 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~ 293 (429)
++|+||||||... +.++.+++ +.++ +.+ .+++|
T Consensus 76 ------~~d~vi~~a~~~~-----------------~~~~~~l~----~aa~------------------~~g~v~~~v- 109 (307)
T 2gas_A 76 ------QVDIVICAAGRLL-----------------IEDQVKII----KAIK------------------EAGNVKKFF- 109 (307)
T ss_dssp ------TCSEEEECSSSSC-----------------GGGHHHHH----HHHH------------------HHCCCSEEE-
T ss_pred ------CCCEEEECCcccc-----------------cccHHHHH----HHHH------------------hcCCceEEe-
Confidence 4799999999642 12233333 3333 223 46777
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-----chh
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-----DSW 368 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-----~~~ 368 (429)
.|..+... .. .....+....| .+|++++.+.+. .|++++.++||++.+++....... ...
T Consensus 110 -~S~~g~~~--~~----~~~~~p~~~~y-~sK~~~e~~~~~-------~~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~ 174 (307)
T 2gas_A 110 -PSEFGLDV--DR----HDAVEPVRQVF-EEKASIRRVIEA-------EGVPYTYLCCHAFTGYFLRNLAQLDATDPPRD 174 (307)
T ss_dssp -CSCCSSCT--TS----CCCCTTHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEETTTTGGGTTCTTCSSCCSS
T ss_pred -ecccccCc--cc----ccCCCcchhHH-HHHHHHHHHHHH-------cCCCeEEEEcceeeccccccccccccccCCCC
Confidence 34333111 00 00011235679 999998877653 379999999998887654322110 000
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.............+.+++|+|++++.++.++. ..|+.+.+.|
T Consensus 175 ~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~---~~~~~~~~~~ 216 (307)
T 2gas_A 175 KVVILGDGNVKGAYVTEADVGTFTIRAANDPN---TLNKAVHIRL 216 (307)
T ss_dssp EEEEETTSCSEEEEECHHHHHHHHHHHHTCGG---GTTEEEECCC
T ss_pred eEEEecCCCcceEEeeHHHHHHHHHHHHcCcc---ccCceEEEeC
Confidence 00000000111235689999999999997653 2366666654
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=143.90 Aligned_cols=225 Identities=11% Similarity=0.047 Sum_probs=142.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC-----CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK-----AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G-----~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
||+++||||+|+||++++++|+++| ++|++++|+..... . ...++.++.+|++|.++++++++.+
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~----~~~~~~~~~~Dl~d~~~~~~~~~~~- 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H----EDNPINYVQCDISDPDDSQAKLSPL- 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C----CSSCCEEEECCTTSHHHHHHHHTTC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c----ccCceEEEEeecCCHHHHHHHHhcC-
Confidence 4789999999999999999999999 99999999865432 0 1235778899999999888776532
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE----
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII---- 292 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV---- 292 (429)
+++|+|||+||... ++.+..+++|+.++.++++++.+.. .+..++|
T Consensus 71 ---~~~d~vih~a~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~~--------------------~~~~~~v~~~g 120 (364)
T 2v6g_A 71 ---TDVTHVFYVTWANR-------STEQENCEANSKMFRNVLDAVIPNC--------------------PNLKHISLQTG 120 (364)
T ss_dssp ---TTCCEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHHTTTC--------------------TTCCEEEEECC
T ss_pred ---CCCCEEEECCCCCc-------chHHHHHHHhHHHHHHHHHHHHHhc--------------------cccceEEeccC
Confidence 34899999999753 2456788999999999988875321 1345776
Q ss_pred ---EEcCcccccCCC-CcccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhcCCC-eEEEEEeCCCccCCcccCCCC-C
Q psy12836 293 ---NVSSVAHKRGTI-NKEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLEGTG-ITVNAVHPGIVNTDILRHSSY-Y 365 (429)
Q Consensus 293 ---~vSS~~~~~~~~-~~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~~~g-IrVn~V~PG~v~T~~~~~~~~-~ 365 (429)
++||.+.+.... ...++.+.... +....|.+ .+.+.+.++. ..| +++..+.|+.+-.+....... .
T Consensus 121 ~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y~~----~E~~~~~~~~---~~~~~~~~ilRp~~v~G~~~~~~~~~~ 193 (364)
T 2v6g_A 121 RKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYD----LEDIMLEEVE---KKEGLTWSVHRPGNIFGFSPYSMMNLV 193 (364)
T ss_dssp THHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHHHH----HHHHHHHHHT---TSTTCEEEEEEESSEECCCTTCSSCHH
T ss_pred ceEEEechhhccccccCCCCCCccccCCccchhhHH----HHHHHHHHhh---cCCCceEEEECCCceeCCCCCcccchH
Confidence 677765432211 11223333222 22446732 3333333332 355 999999999998765432211 0
Q ss_pred chh-HHHHHH--hHHhh------------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 366 DSW-LSTVVL--KPLVW------------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 366 ~~~-~~~~~~--~~~~~------------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+. +...+. ...+. .-..+.+|+|++++.++..+. ..|+.|++.++..
T Consensus 194 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~---~~g~~~ni~~~~~ 256 (364)
T 2v6g_A 194 GTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPY---AKNEAFNVSNGDV 256 (364)
T ss_dssp HHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGG---GTTEEEEECCSCC
T ss_pred HHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCC---CCCceEEecCCCc
Confidence 011 111110 11100 112344899999999996542 3688888876643
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=152.19 Aligned_cols=214 Identities=17% Similarity=0.120 Sum_probs=141.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++||||||+|+||++++++|+++|++|++++|+..+.+ .+.+|+.+. ..+.+.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~----------------~v~~d~~~~---------~~~~l~~ 201 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG----------------KRFWDPLNP---------ASDLLDG 201 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT----------------CEECCTTSC---------CTTTTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc----------------ceeecccch---------hHHhcCC
Confidence 689999999999999999999999999999999876421 146677642 1233458
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|+|||+||..... ..+.+..+..+++|+.++.++++++. . ..+.++||++||.+.+.
T Consensus 202 ~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~a~a---~------------------~~~~~r~V~~SS~~vyg 259 (516)
T 3oh8_A 202 ADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPTKFLAELVA---E------------------STQCTTMISASAVGFYG 259 (516)
T ss_dssp CSEEEECCCC------CCGGGHHHHHHHTHHHHHHHHHHHH---H------------------CSSCCEEEEEEEGGGGC
T ss_pred CCEEEECCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHH---h------------------cCCCCEEEEeCcceEec
Confidence 99999999976433 34566778899999999999988643 1 44567999999976543
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH----
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL---- 377 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~---- 377 (429)
.......+.+... .+...|+.+|...+.+.+. +...|++++.+.||.+.++.... ...+...+....
T Consensus 260 ~~~~~~~~~E~~~-~~~~~y~~~~~~~E~~~~~----~~~~gi~~~ilRp~~v~Gp~~~~----~~~~~~~~~~g~~~~~ 330 (516)
T 3oh8_A 260 HDRGDEILTEESE-SGDDFLAEVCRDWEHATAP----ASDAGKRVAFIRTGVALSGRGGM----LPLLKTLFSTGLGGKF 330 (516)
T ss_dssp SEEEEEEECTTSC-CCSSHHHHHHHHHHHTTHH----HHHTTCEEEEEEECEEEBTTBSH----HHHHHHTTC---CCCC
T ss_pred CCCCCCccCCCCC-CCcChHHHHHHHHHHHHHH----HHhCCCCEEEEEeeEEECCCCCh----HHHHHHHHHhCCCccc
Confidence 1222222333333 3567799999887765433 33468999999999998764210 011111010000
Q ss_pred ----hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 378 ----VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 378 ----~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
...-+..++|+|++++.++..+. ..|. +++.++.
T Consensus 331 g~g~~~~~~i~v~Dva~ai~~~l~~~~---~~g~-~ni~~~~ 368 (516)
T 3oh8_A 331 GDGTSWFSWIAIDDLTDIYYRAIVDAQ---ISGP-INAVAPN 368 (516)
T ss_dssp TTSCCEECEEEHHHHHHHHHHHHHCTT---CCEE-EEESCSC
T ss_pred CCCCceEceEeHHHHHHHHHHHHhCcc---cCCc-EEEECCC
Confidence 01124568999999999997653 3454 4555543
|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-16 Score=110.94 Aligned_cols=52 Identities=12% Similarity=-0.154 Sum_probs=45.3
Q ss_pred EeeccccccccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeecCCCCcc
Q psy12836 12 MITIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLTGPSSFN 72 (429)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 72 (429)
..+.|.+++||+|||++.+.+|++||+||+|| +|||+|||... . .+++||.|
T Consensus 6 ~~~~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk---~TtWe~Pr~~~----~--~~~plp~g 57 (57)
T 2ysd_A 6 SGAEDNLGPLPENWEMAYTENGEVYFIDHNTK---TTSWLDPRCLN----K--QQSGPSSG 57 (57)
T ss_dssp CCCCSCCCSCCSSEEEEECSSCCEEEEETTTT---EEESSCTTTCS----S--CCCSCCCC
T ss_pred ccCCCCCCCCCcCcEEEECCCCCEEEEECCCC---cEecCCCCCcc----c--cCCCCCCC
Confidence 34667888999999999999999999999999 99999999886 2 34688876
|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-16 Score=106.05 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=40.4
Q ss_pred EEEeeccccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 10 LVMITIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
+.+.|.|++.+||+|||++.+.+||+||+||+|| +|||+|||..
T Consensus 3 ~~~~~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~---~T~We~P~~~ 46 (49)
T 2zaj_A 3 SGSSGLDSELELPAGWEKIEDPVYGIYYVDHINR---KTQYENPSGP 46 (49)
T ss_dssp CSCCCCCCSSCCCTTEEEEEETTTEEEEEETTTT---EEESSCCCSS
T ss_pred CCccccCCCCCCCcCceEEEcCCCCEEEEeCCCC---CEecCCCCCC
Confidence 3457889999999999999999999999999999 9999999865
|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-15 Score=100.97 Aligned_cols=38 Identities=13% Similarity=-0.110 Sum_probs=35.6
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
.++++||+|||++.+.+|++||+||+|| +|||+|||+|
T Consensus 3 ~~~~~LP~gWe~~~~~~G~~Yy~nh~t~---~ttw~~Pr~~ 40 (40)
T 2ysf_A 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRR---TTTYIDPRTG 40 (40)
T ss_dssp CCCCCCCSSEEEEECTTCCEEEEETTTC---CEESSCTTTC
T ss_pred CCcCCCCcCcEEEEcCCCCEEEEECCCC---cEecCCCCCC
Confidence 4578899999999999999999999999 9999999976
|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-15 Score=100.27 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=35.9
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
++++++||+|||++.+.+||+||+||+|| +|||+|||.+
T Consensus 2 ~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~---~ttW~~P~~s 40 (40)
T 2ysg_A 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQ---TTSWIHPVMS 40 (40)
T ss_dssp CCSSSCCCTTEEEEECSSSCEEEEESSSC---CEECCCCCCC
T ss_pred CCCcCCCCCCcEEEEcCCCCEEEEECCCC---cCcCCCCCCC
Confidence 35678999999999999999999999999 9999999863
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=137.17 Aligned_cols=206 Identities=11% Similarity=0.007 Sum_probs=127.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-----hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-----DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-----~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++||||+|+||++++++|+++|++|++++|+. ++.+.. +.+. . ..+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~--~--~~~~~~~~D~~d~~~l~~~~~--- 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFK--Q--LGAKLIEASLDDHQRLVDALK--- 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHH--T--TTCEEECCCSSCHHHHHHHHT---
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHH--h--CCeEEEeCCCCCHHHHHHHHh---
Confidence 46799999999999999999999999999999984 333222 2221 1 246788999999998887765
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vS 295 (429)
++|+|||+||..... .|+.++.++++++ + +.+ .++||+
T Consensus 76 ----~~d~vi~~a~~~~~~-------------~~~~~~~~l~~aa----~------------------~~g~v~~~v~-- 114 (313)
T 1qyd_A 76 ----QVDVVISALAGGVLS-------------HHILEQLKLVEAI----K------------------EAGNIKRFLP-- 114 (313)
T ss_dssp ----TCSEEEECCCCSSSS-------------TTTTTHHHHHHHH----H------------------HSCCCSEEEC--
T ss_pred ----CCCEEEECCccccch-------------hhHHHHHHHHHHH----H------------------hcCCCceEEe--
Confidence 479999999975421 2455554444444 3 333 568874
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-------chh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-------DSW 368 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-------~~~ 368 (429)
|..+.... .+ .....+....| .+|.+++.+.+. .|++++.+.||++..++....... ...
T Consensus 115 S~~g~~~~----~~-~~~~~p~~~~y-~sK~~~e~~~~~-------~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~ 181 (313)
T 1qyd_A 115 SEFGMDPD----IM-EHALQPGSITF-IDKRKVRRAIEA-------ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDK 181 (313)
T ss_dssp SCCSSCTT----SC-CCCCSSTTHHH-HHHHHHHHHHHH-------TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSE
T ss_pred cCCcCCcc----cc-ccCCCCCcchH-HHHHHHHHHHHh-------cCCCeEEEEeceeccccccccccccccccCCCCe
Confidence 33321110 00 00111235678 999998877642 478999999998765433221100 000
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
. ......-....+.+++|+|++++.++.++.. .|+.+.+.|
T Consensus 182 ~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~---~~~~~~~~g 222 (313)
T 1qyd_A 182 V-LIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT---LNKTMYIRP 222 (313)
T ss_dssp E-CCBTTSCSEEEEECHHHHHHHHHHHTTCGGG---SSSEEECCC
T ss_pred E-EEeCCCCceEEEEEHHHHHHHHHHHHhCccc---CCceEEEeC
Confidence 0 0000000112356899999999999976532 355555544
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=140.53 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=123.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh------hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL------DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~------~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+++++||||+|+||++++++|+++|++|++++|+. ++.+. .+++.. ..+.++.+|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-l~~~~~----~~v~~v~~D~~d~~~l~~a~~-- 76 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQL-REEFRS----MGVTIIEGEMEEHEKMVSVLK-- 76 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHH-HHHHHH----TTCEEEECCTTCHHHHHHHHT--
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHH-HHHhhc----CCcEEEEecCCCHHHHHHHHc--
Confidence 46799999999999999999999999999999986 22222 222211 246788999999999888775
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINV 294 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~v 294 (429)
.+|+||||||... +.+ .+.+++.+. +.+ .++||
T Consensus 77 -----~~d~vi~~a~~~~-----------------~~~----~~~l~~aa~------------------~~g~v~~~v-- 110 (321)
T 3c1o_A 77 -----QVDIVISALPFPM-----------------ISS----QIHIINAIK------------------AAGNIKRFL-- 110 (321)
T ss_dssp -----TCSEEEECCCGGG-----------------SGG----GHHHHHHHH------------------HHCCCCEEE--
T ss_pred -----CCCEEEECCCccc-----------------hhh----HHHHHHHHH------------------HhCCccEEe--
Confidence 4799999998642 122 233344443 223 46877
Q ss_pred cCcccccCCCCcccCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-----Cchh
Q psy12836 295 SSVAHKRGTINKEDLNSENS-YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-----YDSW 368 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~-~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-----~~~~ 368 (429)
.|..+... . +... .+....| .+|++++.+.+. .|++++.|.||.+..+....... ....
T Consensus 111 ~S~~g~~~--~-----~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lrp~~~~~~~~~~~~~~~~~~~~~~ 175 (321)
T 3c1o_A 111 PSDFGCEE--D-----RIKPLPPFESVL-EKKRIIRRAIEA-------AALPYTYVSANCFGAYFVNYLLHPSPHPNRND 175 (321)
T ss_dssp CSCCSSCG--G-----GCCCCHHHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEHHHHHHHHHCCCSSCCTTS
T ss_pred ccccccCc--c-----ccccCCCcchHH-HHHHHHHHHHHH-------cCCCeEEEEeceeccccccccccccccccccC
Confidence 34332110 0 0000 1124579 999999887753 36888899999875543211000 0000
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
....+........+.+++|+|++++.++.++. ..|+.+.+.|
T Consensus 176 ~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~---~~g~~~~~~g 217 (321)
T 3c1o_A 176 DIVIYGTGETKFVLNYEEDIAKYTIKVACDPR---CCNRIVIYRP 217 (321)
T ss_dssp CEEEETTSCCEEEEECHHHHHHHHHHHHHCGG---GTTEEEECCC
T ss_pred ceEEecCCCcceeEeeHHHHHHHHHHHHhCcc---ccCeEEEEeC
Confidence 00000000111235689999999999997763 2477666654
|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-15 Score=97.04 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=32.2
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
.+++||+|||++.+.+|++||+||+|+ +|||+|||
T Consensus 3 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~---~ttW~~Pr 37 (38)
T 2law_A 3 MEGPLPDGWEQAMTQDGEIYYINHKNK---TTSWLDPR 37 (38)
T ss_dssp --CCCSSSCCEEEETTTEEEEEETTTT---EEESSCTT
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCC---CEeCCCCC
Confidence 467899999999999999999999999 99999998
|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-15 Score=107.20 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=40.5
Q ss_pred EEeeccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 11 VMITIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
-..+.|++++||+|||++.+.+||+||+||+|| +|||+||+...
T Consensus 4 g~~~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk---~T~We~P~~~~ 47 (60)
T 2yse_A 4 GSSGLDSELELPAGWEKIEDPVYGIYYVDHINR---KTQYENPVLEA 47 (60)
T ss_dssp CSCCCCCCSSCCSSEEEEECSSSCEEEEETTTT---EEESSCHHHHH
T ss_pred CccccCCCCCCCCCcEEEECCCCCEEEEeCCCC---CeeccCCCchh
Confidence 346789999999999999999999999999999 99999999864
|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-15 Score=100.58 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=36.3
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
-+++.||+|||++.+.+||+||+||+|| +|||+|||.+.
T Consensus 6 ~~~~~LP~gWe~~~~~~Gr~Yyinh~t~---~TtW~~Pr~~~ 44 (46)
T 2ez5_W 6 GEEEPLPPRWSMQVAPNGRTFFIDHASR---RTTWIDPRNGR 44 (46)
T ss_dssp CCSCCCCTTEEEEECTTSSEEEEETTTT---EEESBCTTTCC
T ss_pred CCCCCCCcCcEEEEcCCCCEEEEECCCC---CEeccCCCCCC
Confidence 3567899999999999999999999999 99999999875
|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-15 Score=97.53 Aligned_cols=37 Identities=14% Similarity=-0.036 Sum_probs=34.8
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
++..||+|||++.+.+|++||+||+|+ +|||+|||.+
T Consensus 5 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~---~t~We~Pr~~ 41 (41)
T 1wr7_A 5 IQSFLPPGWEMRIAPNGRPFFIDHNTK---TTTWEDPRLK 41 (41)
T ss_dssp CCCSSCTTEEEEECTTSCEEEEETTTT---EEESSCGGGC
T ss_pred ccCCCCCCcEEEEcCCCCEEEEECCCC---CeecCCCCCC
Confidence 567899999999999999999999999 9999999975
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-14 Score=136.57 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=122.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHH--HHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKC--EKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~--~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|+++||||+|+||++++++|+++|++|++++|+.... .+..+.+.... ...+.++++|++|.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~------ 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK------ 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHc------
Confidence 46799999999999999999999999999999984321 11111111111 1246788999999999888776
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcCcc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSSVA 298 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS~~ 298 (429)
++|+|||+||... +.++ +.+++.++ +.+ .+++|. |+ .
T Consensus 77 -~~d~vi~~a~~~~-----------------~~~~----~~l~~aa~------------------~~g~v~~~v~-S~-~ 114 (308)
T 1qyc_A 77 -NVDVVISTVGSLQ-----------------IESQ----VNIIKAIK------------------EVGTVKRFFP-SE-F 114 (308)
T ss_dssp -TCSEEEECCCGGG-----------------SGGG----HHHHHHHH------------------HHCCCSEEEC-SC-C
T ss_pred -CCCEEEECCcchh-----------------hhhH----HHHHHHHH------------------hcCCCceEee-cc-c
Confidence 4799999998642 1122 23333333 223 568773 33 2
Q ss_pred cccCCCCcccCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-----chhHHHH
Q psy12836 299 HKRGTINKEDLNSENS-YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-----DSWLSTV 372 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~-~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-----~~~~~~~ 372 (429)
+... . +... .+....| .+|++++.+.+. .|++++.+.||++.+++....... .......
T Consensus 115 g~~~--~-----~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (308)
T 1qyc_A 115 GNDV--D-----NVHAVEPAKSVF-EVKAKVRRAIEA-------EGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVI 179 (308)
T ss_dssp SSCT--T-----SCCCCTTHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEE
T ss_pred ccCc--c-----ccccCCcchhHH-HHHHHHHHHHHh-------cCCCeEEEEeceeccccccccccccccCCCCCceEE
Confidence 2111 0 0111 1224578 999998877653 368889999998765432211100 0000000
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
....-....+.+++|+|++++.++.++. ..|+.+.+.|
T Consensus 180 ~~~~~~~~~~i~~~Dva~~~~~~l~~~~---~~~~~~~~~g 217 (308)
T 1qyc_A 180 LGDGNARVVFVKEEDIGTFTIKAVDDPR---TLNKTLYLRL 217 (308)
T ss_dssp ETTSCCEEEEECHHHHHHHHHTTSSCGG---GTTEEEECCC
T ss_pred ecCCCceEEEecHHHHHHHHHHHHhCcc---ccCeEEEEeC
Confidence 0000011234689999999999997653 2366666554
|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-15 Score=97.26 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=35.0
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
++++||+|||++.+.+|++||+||+|| +|||+|||...
T Consensus 4 ~~~~LP~GWe~~~~~~G~~Yy~nh~t~---~ttW~~Pr~~~ 41 (42)
T 2djy_A 4 GSGPLPPGWEIRNTATGRVYFVDHNNR---TTQFTDPRLSA 41 (42)
T ss_dssp CCSCCCSSEEEEECSSSCEEEEETTTT---EEESSCTTTSC
T ss_pred CcCCCCcCcEEEECCCCCEEEEECCCC---CEeCCCCCCCC
Confidence 457899999999999999999999999 99999999753
|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=100.59 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=37.5
Q ss_pred eccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 14 TIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
+.+.+++||+|||++.+.+||+||+||+|| +|||+|||...
T Consensus 5 ~~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~---~T~We~Pr~~~ 45 (50)
T 1i5h_W 5 DSNDLGPLPPGWEERTHTDGRVFFINHNIK---KTQWEDPRMQN 45 (50)
T ss_dssp SSSCCSSCSTTEEEEECTTSCEEEEETTTT---EEESSCTTTSC
T ss_pred CcccCCCCCcCcEEEEcCCCCEEEEECCCC---CEEeeCCCCCc
Confidence 346678999999999999999999999999 99999999875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-14 Score=137.26 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=121.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
|+++||||+|+||++++++|+++|++|++++|+.+ +.+. .+++.. ..+.++++|++|.+++.++++ .
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~-~~~l~~----~~v~~v~~Dl~d~~~l~~a~~-------~ 79 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTL-LDEFQS----LGAIIVKGELDEHEKLVELMK-------K 79 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHH-HHHHHH----TTCEEEECCTTCHHHHHHHHT-------T
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhH-HHHhhc----CCCEEEEecCCCHHHHHHHHc-------C
Confidence 67999999999999999999999999999999875 3222 222221 146778999999999888775 4
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEcCcccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVSSVAHK 300 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vSS~~~~ 300 (429)
+|+|||+||... +.++ +.+++.++ +.+ .++||+ |..+.
T Consensus 80 ~d~vi~~a~~~~-----------------~~~~----~~l~~aa~------------------~~g~v~~~v~--S~~g~ 118 (318)
T 2r6j_A 80 VDVVISALAFPQ-----------------ILDQ----FKILEAIK------------------VAGNIKRFLP--SDFGV 118 (318)
T ss_dssp CSEEEECCCGGG-----------------STTH----HHHHHHHH------------------HHCCCCEEEC--SCCSS
T ss_pred CCEEEECCchhh-----------------hHHH----HHHHHHHH------------------hcCCCCEEEe--ecccc
Confidence 799999998642 1122 33344443 223 567774 33221
Q ss_pred cCCCCcccCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC----CCCchhHHHHHHh
Q psy12836 301 RGTINKEDLNSENSY-DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----SYYDSWLSTVVLK 375 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~-~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~----~~~~~~~~~~~~~ 375 (429)
.. . +.... +....| .+|.+++.+.+. .|+.++.+.||.+........ ..... . .....
T Consensus 119 ~~--~-----~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 181 (318)
T 2r6j_A 119 EE--D-----RINALPPFEALI-ERKRMIRRAIEE-------ANIPYTYVSANCFASYFINYLLRPYDPKDE-I-TVYGT 181 (318)
T ss_dssp CT--T-----TCCCCHHHHHHH-HHHHHHHHHHHH-------TTCCBEEEECCEEHHHHHHHHHCTTCCCSE-E-EEETT
T ss_pred Cc--c-----cccCCCCcchhH-HHHHHHHHHHHh-------cCCCeEEEEcceehhhhhhhhccccCCCCc-e-EEecC
Confidence 10 0 00001 123568 999998877653 478899999997754321110 00000 0 00000
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
.-....+.+++|+|++++.++.++.. .|+.+.+.|
T Consensus 182 ~~~~~~~i~~~Dva~~~~~~l~~~~~---~~~~~~~~g 216 (318)
T 2r6j_A 182 GEAKFAMNYEQDIGLYTIKVATDPRA---LNRVVIYRP 216 (318)
T ss_dssp SCCEEEEECHHHHHHHHHHHTTCGGG---TTEEEECCC
T ss_pred CCceeeEeeHHHHHHHHHHHhcCccc---cCeEEEecC
Confidence 00112356899999999999976531 356555543
|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-14 Score=100.39 Aligned_cols=39 Identities=18% Similarity=0.000 Sum_probs=36.4
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
.++++||+|||++.+.+|++||+||+|| +|||+|||.+.
T Consensus 14 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk---~TtW~dPr~~~ 52 (53)
T 2jmf_A 14 INEGPLPPGWEIRYTAAGERFFVDHNTR---RTTFEDPRPGA 52 (53)
T ss_dssp TSCSCCCTTEEEEECTTSCEEEEETTTC---CEESSCCCSSC
T ss_pred CcCCCCCcCcEEEEcCCCCEEEEeCCCC---cEecCCCCCCC
Confidence 4678999999999999999999999999 99999999874
|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-14 Score=98.90 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=35.1
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
.+.+||+|||++.+.+|++||+||+|| +|||+||+...
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~---~T~W~~P~~~~ 45 (49)
T 2ysb_A 8 EDLPLPPGWSVDWTMRGRKYYIDHNTN---TTHWSHPLESG 45 (49)
T ss_dssp CCCCCCTTEEEEECSSSCEEEEETTTT---EEESSCTTTSC
T ss_pred CCCCCCCCceEEECCCCCEEEEEcCCC---CEEecCCCCCC
Confidence 345799999999999999999999999 99999999875
|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-14 Score=97.35 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=35.5
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
..+++||+|||++.+.+|++||+||+|| +|||+|||..
T Consensus 7 ~~~~~LP~gWe~~~~~~G~~Yyinh~t~---~TtWe~Pr~~ 44 (46)
T 2l4j_A 7 PASGPLPEGWEQAITPEGEIYYINHKNK---TTSWLDPRLE 44 (46)
T ss_dssp TTTSCCCTTCEEEECTTSCEEEEETTTT---EEECSCCSSC
T ss_pred CcCCCCCcCceeEECCCCCEEEEECCCC---CEeCCCCCcC
Confidence 4578899999999999999999999999 9999999975
|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-14 Score=98.25 Aligned_cols=40 Identities=13% Similarity=-0.149 Sum_probs=33.2
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
...+++||+|||++.+.+|++||+||+|| +|||+|||..-
T Consensus 7 ~~~~~~LP~gWe~~~~~~G~~Yy~nh~T~---~ttWe~Pr~~~ 46 (49)
T 2kpz_A 7 EIEQGFLPKGWEVRHAPNGRPFFIDHNTK---TTTWEDPRLKI 46 (49)
T ss_dssp -----CCCTTEEEEECTTSCEEEEETTTT---EEESSCTTCC-
T ss_pred cccCCCCCCCcEEEECCCCCEEEEECCCC---CEecCCCCCCC
Confidence 34567899999999999999999999999 99999999873
|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-14 Score=93.60 Aligned_cols=38 Identities=16% Similarity=0.026 Sum_probs=35.0
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
.++++||+|||++.+++||+||+||+|+ +|||+||+.-
T Consensus 3 ~~~~~LP~GWe~~~d~~Gr~YY~n~~t~---~T~We~P~~~ 40 (43)
T 2dmv_A 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEK---RTTWDRPSGP 40 (43)
T ss_dssp SSCCSCCTTEEEEECTTSCEEEEETTTC---CEESSCSSSC
T ss_pred CCCCCCCCCceEEECCCCCEEEEECCCC---CEecCCcCCC
Confidence 4578999999999999999999999999 9999999853
|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-14 Score=90.04 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=32.3
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
.++||+|||++.+.+|++||+||+|+ +|||+||+
T Consensus 2 ~~~LP~GWe~~~d~~G~~Yy~n~~t~---~t~We~P~ 35 (36)
T 1wr3_A 2 SPPLPPGWEEKVDNLGRTYYVNHNNR---STQWHRPS 35 (36)
T ss_dssp CSCSCTTEEEEECSSSCEEEEETTTC---CEESSCSC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCC---CEeeeCcC
Confidence 46899999999999999999999999 99999997
|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=97.02 Aligned_cols=38 Identities=13% Similarity=-0.022 Sum_probs=35.9
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
.+++||+|||++.+.+|++||+||+|+ +|||+|||...
T Consensus 8 ~~~~LP~GWe~~~~~~G~~Yyinh~tk---~TtwedPr~~~ 45 (54)
T 1wmv_A 8 VAGDLPYGWEQETDENGQVFFVDHINK---RTTYLDPRLAF 45 (54)
T ss_dssp CSSCSCTTEEEEECTTSCEEEEESSSC---CEESSCTTSSC
T ss_pred cCCCCCcCcEEEECCCCCEEEEeCCCC---CEeecCCCCcc
Confidence 567899999999999999999999999 99999999886
|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-14 Score=91.32 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=33.5
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
..++||+|||++.+++|++||+||+|+ +|||+||+.
T Consensus 3 ~~~~LP~gWe~~~d~~G~~YY~n~~t~---~t~We~P~~ 38 (39)
T 2kyk_A 3 AMGPLPPGWERRVDNMGRIYYVDHFTR---TTTWQRPTL 38 (39)
T ss_dssp SSCCCCSSCEEEECTTSCEEEECSSSC---CEECCCCCC
T ss_pred ccCCCCCCcEEEEcCCCCEEEEECCCC---CEeccCCCC
Confidence 457899999999999999999999999 999999984
|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=89.22 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=32.3
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+.+||+|||++.+++|++||+||+|+ +|||+||+
T Consensus 2 ~~~LP~gWe~~~d~~g~~Yy~n~~t~---~t~W~~P~ 35 (36)
T 1wr4_A 2 SPGLPSGWEERKDAKGRTYYVNHNNR---TTTWTRPI 35 (36)
T ss_dssp CTTCCTTEEEEECSSSCEEEEETTTT---EEESSCCC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCC---CEeCcCCC
Confidence 46899999999999999999999999 99999996
|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=95.04 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=34.0
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
+++||+|||++.+.+|++||+||+|| +|||+||+..
T Consensus 11 ~~~LP~GWe~~~d~~g~~YYvnh~t~---~T~We~P~~~ 46 (49)
T 2dwv_A 11 REGLPPGWERVESSEFGTYYVDHTNK---RAQYRHPSGP 46 (49)
T ss_dssp SSCCCTTEEEEEETTTEEEEEETTTT---EEESSCCCCC
T ss_pred CCCCCcCcEEEECCCCCEEEEECCCC---CEeccCcCCC
Confidence 57899999999999999999999999 9999999864
|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-13 Score=87.30 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=31.3
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
++||+|||+|.+.+| +||+||+|+ +|||++|+..
T Consensus 2 ~~LP~GWe~~~d~~g-~YY~n~~t~---~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDTSG-TYYWHIPTG---TTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECSSC-EEEEETTTT---EEESSCCCC-
T ss_pred CcCCCCceEEEeCCC-CEEEecCCC---CEeccCCCCC
Confidence 579999999999999 999999999 9999999864
|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-13 Score=88.18 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=34.4
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
.++..||+|||++.+++||+||+||+|+ .|||+||+.
T Consensus 3 ~~~~~LP~gW~~~~d~~Gr~YY~n~~T~---~t~We~P~~ 39 (40)
T 2ysh_A 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTN---ETTWERPSS 39 (40)
T ss_dssp CCCSSCCTTCEEEECTTSCEEEECSSSC---CEESSSCCC
T ss_pred CCCCCCCCCceEEECCCCCEEEEECCCC---CEeCCCCCC
Confidence 4568899999999999999999999999 999999985
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=110.85 Aligned_cols=208 Identities=18% Similarity=0.125 Sum_probs=129.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.||||||+|.||++++++|+++|++|+++.|++.+ ..+ ..| .+ ..+....+|
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~--------------~~~---~~~-----~~------~~~~l~~~d 53 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP--------------GRI---TWD-----EL------AASGLPSCD 53 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT--------------TEE---EHH-----HH------HHHCCCSCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc--------------Cee---ecc-----hh------hHhhccCCC
Confidence 48999999999999999999999999999997532 111 111 11 123346789
Q ss_pred EEEEccccC--CCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 224 VLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 224 ~lI~nAG~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
.+||.||.. .+....+....+..++.|+.++-++.+.+... ..+..++|+.||.+. +
T Consensus 54 ~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~--------------------~~~~~~~i~~Ss~~v-y 112 (298)
T 4b4o_A 54 AAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKA--------------------PQPPKAWVLVTGVAY-Y 112 (298)
T ss_dssp EEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------SSCCSEEEEEEEGGG-S
T ss_pred EEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh--------------------CCCceEEEEEeeeee-e
Confidence 999999853 22233466666778888988877766554321 234456777776554 3
Q ss_pred CCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh---
Q psy12836 302 GTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV--- 378 (429)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--- 378 (429)
+........++.+..+...|+.+|...+. +......++++..+.||.|-.+.... + ..+.....
T Consensus 113 g~~~~~~~~E~~p~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~~~r~~~v~g~~~~~-------~-~~~~~~~~~~~ 179 (298)
T 4b4o_A 113 QPSLTAEYDEDSPGGDFDFFSNLVTKWEA-----AARLPGDSTRQVVVRSGVVLGRGGGA-------M-GHMLLPFRLGL 179 (298)
T ss_dssp CCCSSCCBCTTCCCSCSSHHHHHHHHHHH-----HHCCSSSSSEEEEEEECEEECTTSHH-------H-HHHHHHHHTTC
T ss_pred cCCCCCcccccCCccccchhHHHHHHHHH-----HHHhhccCCceeeeeeeeEEcCCCCc-------h-hHHHHHHhcCC
Confidence 43333334444444555567666655442 22345678999999999887663211 1 11111111
Q ss_pred ---------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 379 ---------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 379 ---------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+.-+...+|+|+++++++..+. ..| .+++.++...
T Consensus 180 ~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~---~~g-~yn~~~~~~~ 223 (298)
T 4b4o_A 180 GGPIGSGHQFFPWIHIGDLAGILTHALEANH---VHG-VLNGVAPSSA 223 (298)
T ss_dssp CCCBTTSCSBCCEEEHHHHHHHHHHHHHCTT---CCE-EEEESCSCCC
T ss_pred cceecccCceeecCcHHHHHHHHHHHHhCCC---CCC-eEEEECCCcc
Confidence 1112468999999999997663 356 5566655443
|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=86.85 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=33.3
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+++++.||+|||++.+.+|+ ||+||+|+ +|||++|+
T Consensus 3 ~~~~~~LP~GWe~~~~~~G~-YY~n~~t~---~tqWe~P~ 38 (39)
T 2ysc_A 3 SGSSGGLPPGWRKIHDAAGT-YYWHVPSG---STQWQRPT 38 (39)
T ss_dssp SCCCCCCCTTEEEEEETTEE-EEEESSSC---CEESSCCC
T ss_pred CCCCCCCCCCcEEEEcCCCC-EEEEcCCC---CEeccCCC
Confidence 56788999999999999995 99999999 99999996
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=124.98 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++||||+||||+++++.|+++|++|++++|+.+++++..+++.... .+.++.+|+++.++++++++
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~---~~~~~~~D~~~~~~~~~~~~---- 187 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVK---- 187 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTT----
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEecCCCHHHHHHHHH----
Confidence 45789999999999999999999999999999999999998888877775432 24567899999988877664
Q ss_pred hCCCeeEEEEccccCCCC---CCCCH-HHHHhhhcchhHHHH
Q psy12836 218 ENKKINVLINNAGVSGCR---KMLTE-EKIELQLGVNHMGHF 255 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~---~~~~~-~~~~~~~~vN~~g~~ 255 (429)
.+|+||||||..... .+.+. ++++..+++|+.+++
T Consensus 188 ---~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 ---GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp ---TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred ---hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 369999999864322 12232 556678999998765
|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.9e-13 Score=90.51 Aligned_cols=39 Identities=5% Similarity=-0.063 Sum_probs=36.5
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
-.+.+||+|||++.+.+||+||+||+|+ +|||+|||...
T Consensus 4 P~~~~LP~GWe~~~~~~gr~y~~n~~t~---~t~W~dPr~~~ 42 (46)
T 1jmq_A 4 PDDVPLPAGWEMAKTSSGQRYFKNHIDQ---TTTWQDPRKAM 42 (46)
T ss_dssp CSSCCCCTTBCCBCCSSCCCBEEETTTT---EEESSCTTTSS
T ss_pred CCCCCCCcCcEEEEcCCCceEEEEecCC---ceeecCCCchh
Confidence 4567999999999999999999999999 99999999886
|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-13 Score=86.05 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=32.5
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
..||+|||++.+++|++||+||+|+ +|||+||+..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~---~t~W~~P~~~ 36 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTK---TSTWTDPRMS 36 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTT---EEESSCTTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCC---CeeeeCcCCC
Confidence 3699999999999999999999999 9999999853
|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-12 Score=85.94 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=32.4
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
...||+||+++.+.+||+||+||+|+ +|||+||+.
T Consensus 6 ~~~LP~gW~~~~~~~Gr~YY~n~~T~---~t~We~P~~ 40 (43)
T 1ymz_A 6 SMPLPPGWERRTDVEGKVYYFNVRTL---TTTWERPTI 40 (43)
T ss_dssp -CCCCSSEEEEECTTSCEEEEETTTT---EEESSCCCS
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCC---CCcccCCcc
Confidence 46899999999999999999999999 999999985
|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-12 Score=101.60 Aligned_cols=39 Identities=8% Similarity=-0.136 Sum_probs=36.7
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
|.+++||+|||++.+++|++||+||+|| +|||+|||...
T Consensus 68 d~~~pLP~GWE~r~d~~Gr~YfIdH~tk---tTtW~dPRl~~ 106 (109)
T 3l4h_A 68 DTRLELPRGWEIKTDQQGKSFFVDHNSR---ATTFIDPRIPL 106 (109)
T ss_dssp CTTSCCCTTEEEEECTTCCEEEEETTTT---EEESSCSCCSC
T ss_pred CCCCCCCCCCeEEECCCCCEEEEeCCCC---CEeeCCCCccc
Confidence 6678999999999999999999999999 99999999875
|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=87.02 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=33.1
Q ss_pred ccccccccchhhccC-CceEEEEeceeeeeeceecccceec
Q psy12836 17 VEDTLRSALWELSSG-AGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
+++.||+||+++.+. .||+||+||.|+ .|||++|...
T Consensus 4 ~~~~LP~GW~~~~~~~~Gr~YY~N~~T~---~sqWe~P~~~ 41 (54)
T 2jv4_A 4 VNTGLPAGWEVRHSNSKNLPYYFNPATR---ESRWEPPADT 41 (54)
T ss_dssp CCCCCCSSCCEEECSSSSCEEEEETTTT---EEESSCCTTS
T ss_pred CCCCCCCCcEEEEECCCCCEEEEECCCC---cEEecCCCCc
Confidence 457899999999775 899999999999 9999999754
|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-11 Score=96.86 Aligned_cols=73 Identities=14% Similarity=-0.034 Sum_probs=55.9
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceecCccce-------eeeecCCCCcceEEEEEee---ecccC
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTT-------LKMLTGPSSFNLVAFIVHV---TIGMD 85 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lp~~~~~~~~~~---~~~~d 85 (429)
..+..||++|+++.+++||+||+||.|+ .|||++|+....... =+.. .-+.|++||+||. ++..+
T Consensus 7 ~~~~~lp~~W~e~~~~~Gr~YYyN~~T~---~s~We~P~~~~~~~e~~~~~~~W~~~--~~~~Gr~Yy~N~~T~~s~We~ 81 (92)
T 2l5f_A 7 GTASGAKSMWTEHKSPDGRTYYYNTETK---QSTWEKPDDLKTPAEQLLSKCPWKEY--KSDSGKTYYYNSQTKESRWAK 81 (92)
T ss_dssp SSTTBTTTTEEEEECTTSCEEEEETTTT---EEESSCSGGGTCHHHHHHHSCSEEEE--ECTTCCEEEEETTTTEEESCC
T ss_pred CcCCCCCCCcEEEEcCCCCEEEEECCCC---ceecccCccccccccccccccceEEE--ECCCCCEEEEECCCCCeeccC
Confidence 3467899999999999999999999999 999999987651100 0001 1246799999998 88999
Q ss_pred cccccccc
Q psy12836 86 TQLVFPKQ 93 (429)
Q Consensus 86 p~~~~~~~ 93 (429)
|+.+-..+
T Consensus 82 P~~~~~~~ 89 (92)
T 2l5f_A 82 PKELEDLE 89 (92)
T ss_dssp CHHHHTSS
T ss_pred chhHhhhh
Confidence 98665443
|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-11 Score=93.86 Aligned_cols=61 Identities=16% Similarity=0.027 Sum_probs=47.3
Q ss_pred ccchhhccCCceEEEEeceeeeeeceecccceecCccce-------eeeecCCCCcceEEEEEee---ecccCccc
Q psy12836 23 SALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTT-------LKMLTGPSSFNLVAFIVHV---TIGMDTQL 88 (429)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lp~~~~~~~~~~---~~~~dp~~ 88 (429)
+||+++.+++||+||+||+|+ .|||++|+....... =... .-+.|+++|+||. ++..+|+.
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~---~s~W~~P~~~~~~~~~~~lp~gW~~~--~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTK---KSTWEKPKELISQEELLLRENGWKAA--KTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTT---EEESSCCHHHHHHHHHHHHHHTCEEE--ECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCC---CEEeecchhhcccccccCCCCeEEEE--ECCCCCEEEEECCCCCEECCCCCC
Confidence 589999999999999999999 999999987641000 0001 1245799999999 89999874
|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-11 Score=92.79 Aligned_cols=38 Identities=18% Similarity=0.053 Sum_probs=34.8
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
+..++||+|||++.+.+|++||+||+|| +|||+|||..
T Consensus 51 ~~~~~LP~gWe~~~~~~G~~Yy~n~~t~---~t~w~~Pr~~ 88 (90)
T 2kxq_A 51 EELGPLPPGWEIRNTATGRVYFVDHNNR---TTQFTDPRLS 88 (90)
T ss_dssp GGTCCCCSSCCEEECTTSCEEEEETTTT---EEESSCTTTS
T ss_pred ccccccCCCceEEECCCCCEEEEECCCC---cEecCCCCcC
Confidence 3456899999999999999999999999 9999999975
|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-11 Score=80.72 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=32.7
Q ss_pred cccccccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 16 EVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
+.+..||||||++....| +||+||.|+ +|||++|.-
T Consensus 15 ~~~~~LPpGW~~~~D~sG-tYY~h~~T~---tTQWerP~~ 50 (55)
T 2e45_A 15 ETDSDLPAGWMRVQDTSG-TYYWHIPTG---TTQWEPPGR 50 (55)
T ss_dssp CSCSCCCTTEEEEEETTE-EEEEETTTC---CEESSCCCC
T ss_pred cCCCCCCCCCeEeecCCC-CEEEEcCCC---CCccCCCCC
Confidence 456679999999999999 999999999 999999953
|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-11 Score=92.26 Aligned_cols=36 Identities=17% Similarity=-0.041 Sum_probs=33.6
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
.+.+||+|||++.+.+|++||+||+|| +|||+|||.
T Consensus 53 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~---~ttw~~Prl 88 (88)
T 1tk7_A 53 NEGPLPPGWEIRYTAAGERFFVDHNTR---RTTFEDPRP 88 (88)
T ss_dssp HSCSSCSSCEEEEETTTEEEEEETTTT---EEESSSSCC
T ss_pred cccccCCceEEEECCCCCEEEEECCCC---cEeCCCCCC
Confidence 367899999999999999999999999 999999983
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.3e-10 Score=100.94 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEcC----------------CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGA----------------NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGa----------------ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.+|+||+|||||| |||||+++|++|+++|++|++++++.. ++ . +. .+ -.+|
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-------~--~~-g~--~~~d 70 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-------T--PP-FV--KRVD 70 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-------C--CT-TE--EEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-------c--CC-CC--eEEc
Confidence 3689999999999 689999999999999999999988652 11 0 11 12 2468
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+++.+ ++++.+.+.++++|++|||||+..
T Consensus 71 v~~~~---~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 71 VMTAL---EMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp CCSHH---HHHHHHHHHGGGCSEEEECCBCCS
T ss_pred cCcHH---HHHHHHHHhcCCCCEEEECCcccC
Confidence 88854 456666777899999999999863
|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.8e-11 Score=110.56 Aligned_cols=36 Identities=8% Similarity=-0.139 Sum_probs=34.8
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
++||||||++.+++|++||+||+|| +|||.||++..
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~---tt~w~~p~~~~ 45 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQ---TTCWDHPKMTE 45 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTT---EEESSCHHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcc---cccCCCCchhh
Confidence 7899999999999999999999999 99999999876
|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-10 Score=78.09 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=35.1
Q ss_pred cccccccccchhhcc-CCceEEEEeceeeeeeceecccceecC
Q psy12836 16 EVEDTLRSALWELSS-GAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
..++.||+||+++.. ..||+||+|+.|+ .|||++|+...
T Consensus 6 ~~~~~LP~gW~~~~~~~~gr~YY~N~~T~---~SqWe~P~~~~ 45 (52)
T 2jx8_A 6 LPEELVHAGWEKCWSRRENRPYYFNRFTN---QSLWEMPVLGQ 45 (52)
T ss_dssp CCHHHHHHTCCEEEETTTTEEEEEETTTT---EEESSCCCCTT
T ss_pred CCcCCCCcCcEEEEccccCCEEEEECCCC---CEEeCCCCCCC
Confidence 456789999999987 5899999999999 99999998876
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-10 Score=108.08 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=100.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.+++||||+|+||.+++..|+++|. +|++++++. ++......++....- . +. .|+.+.++..+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~--~--~~-~di~~~~~~~~a~- 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF--P--LL-AGLEATDDPKVAF- 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC--T--TE-EEEEEESCHHHHT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc--c--cc-CCeEeccChHHHh-
Confidence 3699999999999999999999996 899999874 333332333322110 1 11 3554433333332
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
...|++||.||...... +.....+++|+.++..+++.+..+ ....+++++
T Consensus 79 ------~~~D~Vih~Ag~~~~~~----~~~~~~~~~Nv~~t~~l~~a~~~~--------------------~~~~~~vvv 128 (327)
T 1y7t_A 79 ------KDADYALLVGAAPRKAG----MERRDLLQVNGKIFTEQGRALAEV--------------------AKKDVKVLV 128 (327)
T ss_dssp ------TTCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHH--------------------SCTTCEEEE
T ss_pred ------CCCCEEEECCCcCCCCC----CCHHHHHHHHHHHHHHHHHHHHhh--------------------cCCCeEEEE
Confidence 35799999999865321 223457899999988888777532 113468888
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE 340 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~ 340 (429)
+|+........... ....+++...|+.||...+.+...++..+.
T Consensus 129 ~snp~~~~~~~~~~---~~~~~~p~~~yg~tkl~~er~~~~~a~~~g 172 (327)
T 1y7t_A 129 VGNPANTNALIAYK---NAPGLNPRNFTAMTRLDHNRAKAQLAKKTG 172 (327)
T ss_dssp CSSSHHHHHHHHHH---TCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred eCCchhhhHHHHHH---HcCCCChhheeccchHHHHHHHHHHHHHhC
Confidence 88754211100000 011245566799999999998888887653
|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.7e-10 Score=110.49 Aligned_cols=40 Identities=15% Similarity=-0.052 Sum_probs=36.4
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
.+..+.||||||++.+++||+||+||+|| +|||+|||...
T Consensus 3 ~~~~~~lP~gWe~~~~~~g~~y~i~h~~~---~t~w~~Pr~~~ 42 (429)
T 3olm_A 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTK---TTTWDDPRLPS 42 (429)
T ss_dssp --CCCCCCTTCCCCCSSCCCCCEEETTTT---EEESSCTTSCC
T ss_pred CccCCCCCCCceeEECCCCCeEEEeCCCc---ceeccCCCCCc
Confidence 45678999999999999999999999999 99999999986
|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-09 Score=95.11 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=29.3
Q ss_pred cccccccchhhcc-CCceEEEEeceeeeeeceecccceecC
Q psy12836 18 EDTLRSALWELSS-GAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 18 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
+++||||||++.+ ..|++||+||+|+ +|||+||+.-.
T Consensus 7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~---~t~We~P~~~~ 44 (166)
T 3tc5_A 7 EEKLPPGWEKAMSRSSGRVYYFNHITN---ASQWERPSGNS 44 (166)
T ss_dssp ---CCTTEEEEECTTTCCEEEEETTTC---CEESSCC----
T ss_pred CCCCCCCceEEEcCCCCCEEEEECCCC---CEEecCCCCCc
Confidence 4789999999999 5999999999999 99999997543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=92.32 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCEEEEEcC----------------CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC
Q psy12836 141 RGKIVIVTGA----------------NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204 (429)
Q Consensus 141 ~gK~vLITGa----------------ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~ 204 (429)
+||+|||||| ||++|.++|++|+++|++|++++|+.... ...+ ..+. ..|+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~--------~~~~-~~~~--~~~v~- 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK--------PEPH-PNLS--IREIT- 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC--------CCCC-TTEE--EEECC-
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc--------ccCC-CCeE--EEEHh-
Confidence 5899999999 77899999999999999999999975311 0001 1222 23554
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+++++++.+.+.++++|++|+|||+..
T Consensus 70 --s~~em~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 70 --NTKDLLIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp --SHHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred --HHHHHHHHHHHhcCCCCEEEEcCcccc
Confidence 466667777777889999999999864
|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.9e-09 Score=78.06 Aligned_cols=58 Identities=10% Similarity=-0.081 Sum_probs=44.7
Q ss_pred ccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeecCCCC---------cceEEEEEee---ecccCcc
Q psy12836 23 SALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLTGPSS---------FNLVAFIVHV---TIGMDTQ 87 (429)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp---------~~~~~~~~~~---~~~~dp~ 87 (429)
.+|+|+.+++||+||+||.|+ .|||++|+.-... .-..++| .|+++|.|+. ++..+|+
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~---~s~We~P~~~~~~----~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISG---ASQWEKPEGFQGD----LKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTT---EEECSCCSSCSSC----CSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CCcEEEECCCCCEEEEECCCC---CEeecCCCccccc----ccccCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 689999999999999999999 9999999865311 0111233 4599999998 7777764
|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-09 Score=80.47 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=33.3
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
..||+|||+..+.+||+||+||+|+ .|||++|+...
T Consensus 39 ~~lp~gW~~~~~~~Gr~Yy~n~~t~---~t~W~~P~~~~ 74 (75)
T 1o6w_A 39 LLRENGWKAAKTADGKVYYYNPTTR---ETSWTIPAFEK 74 (75)
T ss_dssp HHHHHTCEEEECTTCCEEEEETTTT---EEESSCCCCCC
T ss_pred cCCCCeEEEEECCCCCEEEEECCCC---CEECCCCCCCC
Confidence 4689999999999999999999999 99999998764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=79.56 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+++++|+|+ |++|+++++.|+++| ++|++++|+.++.+.... ..+..+.+|+++.+++.++++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~------ 68 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--------MGVATKQVDAKDEAGLAKALG------ 68 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--------TTCEEEECCTTCHHHHHHHTT------
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--------CCCcEEEecCCCHHHHHHHHc------
Confidence 3578999999 999999999999999 899999999887765431 135567899999887776653
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
++|++|++++.
T Consensus 69 -~~d~vi~~~~~ 79 (118)
T 3ic5_A 69 -GFDAVISAAPF 79 (118)
T ss_dssp -TCSEEEECSCG
T ss_pred -CCCEEEECCCc
Confidence 67999999863
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=92.95 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=71.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcC---CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++++|+|| ||||+++++.|+++| .+|++++|+.+++++..+++....+ .++..+.+|+++.+++++++++.
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~-~~~~~~~~D~~d~~~l~~~l~~~---- 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGY-GEIDITTVDADSIEELVALINEV---- 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTC-CCCEEEECCTTCHHHHHHHHHHH----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcC-CceEEEEecCCCHHHHHHHHHhh----
Confidence 57899999 899999999999998 4999999999999988887754322 35778899999999999999876
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
++|+||||||..
T Consensus 76 -~~DvVin~ag~~ 87 (405)
T 4ina_A 76 -KPQIVLNIALPY 87 (405)
T ss_dssp -CCSEEEECSCGG
T ss_pred -CCCEEEECCCcc
Confidence 689999999853
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-08 Score=84.92 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHcCCEEEEEEcChhHHH---HHHHHHhhhcCCceEEEEEeeCCCH--HHHHHHHHHHHHhCCCeeEEEE
Q psy12836 153 GIGKAIARELAKRKAKVIMACRDLDKCE---KARKEVVLESKNKYVLCRKCDLASQ--ESIRAFAEEVKKENKKINVLIN 227 (429)
Q Consensus 153 GIG~aiA~~La~~G~~Vil~~R~~~~~~---~~~~~l~~~~~~~~v~~~~~Dls~~--~sv~~~~~~i~~~~g~iD~lI~ 227 (429)
-++.++++.|+++|++|++..|+.+... +..+.+... +.+...+++|++++ ++++++++.+.+.+|+ |+|||
T Consensus 27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVn 103 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVH 103 (157)
T ss_dssp CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 4779999999999999999988754332 123333332 34688889999999 9999999999999999 99999
Q ss_pred ccccC
Q psy12836 228 NAGVS 232 (429)
Q Consensus 228 nAG~~ 232 (429)
|||+.
T Consensus 104 nAgg~ 108 (157)
T 3gxh_A 104 CLANY 108 (157)
T ss_dssp CSBSH
T ss_pred CCCCC
Confidence 99974
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-08 Score=92.11 Aligned_cols=82 Identities=24% Similarity=0.429 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++|||++ |+|+++|+.|+++| +|++++|+.+++++..+++........ .+.+|+++. .+
T Consensus 124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~--~~~~d~~~~----------~~ 189 (287)
T 1nvt_A 124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF--GEEVKFSGL----------DV 189 (287)
T ss_dssp CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH--HHHEEEECT----------TC
T ss_pred CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccccc--ceeEEEeeH----------HH
Confidence 46789999999997 99999999999999 999999999988888777644211000 123455441 34
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
.++++|+||||+|...
T Consensus 190 ~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 190 DLDGVDIIINATPIGM 205 (287)
T ss_dssp CCTTCCEEEECSCTTC
T ss_pred hhCCCCEEEECCCCCC
Confidence 5678999999999764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=89.96 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++||||+||||+++++.+...|++|++++|+.++++.+ +++ + .. ..+|.++.+++.+.+.++.. +
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~----g-~~---~~~d~~~~~~~~~~~~~~~~--~ 213 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI----G-FD---AAFNYKTVNSLEEALKKASP--D 213 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT----T-CS---EEEETTSCSCHHHHHHHHCT--T
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc----C-Cc---EEEecCCHHHHHHHHHHHhC--C
Confidence 589999999999999999999999999999999998877665 333 1 11 23588774455555555433 5
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|+|+|
T Consensus 214 ~~d~vi~~~g 223 (333)
T 1v3u_A 214 GYDCYFDNVG 223 (333)
T ss_dssp CEEEEEESSC
T ss_pred CCeEEEECCC
Confidence 8999999998
|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-08 Score=65.22 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=27.6
Q ss_pred ccccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 17 VEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+.+.+|++|++..+++|++||+|..|+ .+||++|.
T Consensus 6 ~~~~~~~~W~e~~~~~G~~YYyN~~T~---eS~We~P~ 40 (41)
T 1ywi_A 6 SVGSAKSMWTEHKSPDGRTYYYNTETK---QSTWEKPD 40 (41)
T ss_dssp ------CCEEEEEETTTEEEEEETTTT---EEEESCC-
T ss_pred cCCCCCCCcEEEECCCCCEEEEECCCC---CEEeCCCC
Confidence 456789999999999999999999999 99999995
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=83.57 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++||||+||||+++++.+...|++|++++|+.++.+.+. + . + .. ..+|.++.+..+.+.+... .+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~---~-g-~~---~~~d~~~~~~~~~~~~~~~--~~ 106 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-R---L-G-VE---YVGDSRSVDFADEILELTD--GY 106 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-T---T-C-CS---EEEETTCSTHHHHHHHHTT--TC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H---c-C-CC---EEeeCCcHHHHHHHHHHhC--CC
Confidence 5899999999999999999999999999999999987765432 1 1 1 11 1257777654444433321 23
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|+|+|
T Consensus 107 ~~D~vi~~~g 116 (198)
T 1pqw_A 107 GVDVVLNSLA 116 (198)
T ss_dssp CEEEEEECCC
T ss_pred CCeEEEECCc
Confidence 6999999997
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-09 Score=111.16 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=41.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
..++.||+|+|||++ |||+++|+.|+..|++|+++++++.+..++..
T Consensus 260 g~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~ 306 (488)
T 3ond_A 260 DVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQATM 306 (488)
T ss_dssp CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 457899999999997 99999999999999999999999887665544
|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.2e-08 Score=63.42 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=31.6
Q ss_pred cccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 18 EDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
--.+|++|+|..+++|++||+|..|+ .|||++|.
T Consensus 5 ~~~~~~~W~e~~~~~G~~YYyN~~T~---eS~We~P~ 38 (40)
T 2ysi_A 5 SSGTEEIWVENKTPDGKVYYYNARTR---ESAWTKPD 38 (40)
T ss_dssp CCCCCCSEEEEECTTSCEEEEETTTC---CEESSCCS
T ss_pred cCCCCCCCEEEECCCCCEEEEECCCC---CEEeCCCC
Confidence 34689999999999999999999999 99999996
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=92.66 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|++|+++||| +||+|+++++.|++.|++|++++|+.+++++..+++ + .+..+.+|+++.+++.++++
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~----~--~~~~~~~Dv~d~~~l~~~l~------ 67 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----Q--HSTPISLDVNDDAALDAEVA------ 67 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC----T--TEEEEECCTTCHHHHHHHHT------
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc----C--CceEEEeecCCHHHHHHHHc------
Confidence 3578999998 799999999999999999999999987765443321 1 35678899999988877663
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
++|+||||++..
T Consensus 68 -~~DvVIn~a~~~ 79 (450)
T 1ff9_A 68 -KHDLVISLIPYT 79 (450)
T ss_dssp -TSSEEEECCC--
T ss_pred -CCcEEEECCccc
Confidence 689999999864
|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-08 Score=80.57 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=42.9
Q ss_pred cccccchhhccCCceEEEEeceeeeeeceecccceecCccceeeeecCCCCcc---------eEEEEEee---ecccCcc
Q psy12836 20 TLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGGIGTTLKMLTGPSSFN---------LVAFIVHV---TIGMDTQ 87 (429)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~---------~~~~~~~~---~~~~dp~ 87 (429)
..|+|||++.++.|+|||+||++. . .++||+| +++||||+ +++.|||
T Consensus 45 r~p~~we~~~~~~~lV~~vn~~~d---~------------------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPR 103 (109)
T 3l4h_A 45 RDARNFERYQHNRDLVNFINMFAD---T------------------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103 (109)
T ss_dssp HCTHHHHHHTTCHHHHHHHHTTCC---T------------------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSC
T ss_pred cCCcChhhhcCcCCceEEeccCCC---C------------------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCC
Confidence 479999999999999999999975 1 2466665 99999999 9999999
Q ss_pred ccc
Q psy12836 88 LVF 90 (429)
Q Consensus 88 ~~~ 90 (429)
+..
T Consensus 104 l~~ 106 (109)
T 3l4h_A 104 IPL 106 (109)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-07 Score=97.25 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++||+++|||| ||+|+++|++|+++|++|++++|+.+++++..+++. ..+ .++.+ ++++ .
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~-----~~~----~~~~d---l~~~------~ 421 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG-----GKA----LSLTD---LDNY------H 421 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT-----C-C----EETTT---TTTC-------
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----Cce----eeHHH---hhhc------c
Confidence 578999999999 599999999999999999999999998887766652 111 12322 1100 1
Q ss_pred CCCeeEEEEccccCCC-------CCCCCHHHHHhhhcchhHHH
Q psy12836 219 NKKINVLINNAGVSGC-------RKMLTEEKIELQLGVNHMGH 254 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~-------~~~~~~~~~~~~~~vN~~g~ 254 (429)
.+.+|+||||+|+... ....+.+.+...+++|+.+.
T Consensus 422 ~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~ 464 (523)
T 2o7s_A 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR 464 (523)
T ss_dssp -CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred ccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence 1358999999997431 12345567788899999865
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=88.91 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
..+++++++|+|+ |+||+++++.+...|++|++++|+.++++.+.+.+ + .. +.+|.++.+++++++.
T Consensus 162 ~~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----g-~~---~~~~~~~~~~l~~~~~---- 228 (369)
T 2eez_A 162 PGVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----G-GR---VITLTATEANIKKSVQ---- 228 (369)
T ss_dssp TBBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----T-TS---EEEEECCHHHHHHHHH----
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----C-ce---EEEecCCHHHHHHHHh----
Confidence 3588999999999 99999999999999999999999998876654433 1 12 3568888887777664
Q ss_pred hCCCeeEEEEccccC
Q psy12836 218 ENKKINVLINNAGVS 232 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~ 232 (429)
..|++|+|+|..
T Consensus 229 ---~~DvVi~~~g~~ 240 (369)
T 2eez_A 229 ---HADLLIGAVLVP 240 (369)
T ss_dssp ---HCSEEEECCC--
T ss_pred ---CCCEEEECCCCC
Confidence 469999999864
|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-07 Score=74.47 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=31.5
Q ss_pred cccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 20 TLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
.||++|+++.+++||+||+||.|+ .|||++|+.=
T Consensus 52 ~~~~~W~~~~~~~Gr~Yy~N~~T~---~s~We~P~~~ 85 (92)
T 2l5f_A 52 LSKCPWKEYKSDSGKTYYYNSQTK---ESRWAKPKEL 85 (92)
T ss_dssp HHSCSEEEEECTTCCEEEEETTTT---EEESCCCHHH
T ss_pred ccccceEEEECCCCCEEEEECCCC---CeeccCchhH
Confidence 478999999999999999999999 9999999853
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=81.42 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=65.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC---hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD---LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~---~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
..+++||+++|+|+ ||+|++++..|++.|+ +|++++|+ .+++++..+++....+ +.+...++.+.+++.+.+
T Consensus 149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~---~~~~~~~~~~~~~l~~~l 224 (315)
T 3tnl_A 149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD---CKAQLFDIEDHEQLRKEI 224 (315)
T ss_dssp TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS---CEEEEEETTCHHHHHHHH
T ss_pred CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC---CceEEeccchHHHHHhhh
Confidence 46789999999998 7999999999999999 89999999 8888888888765443 223345777766655444
Q ss_pred HHHHHhCCCeeEEEEcccc
Q psy12836 213 EEVKKENKKINVLINNAGV 231 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~ 231 (429)
. ..|+|||+...
T Consensus 225 ~-------~aDiIINaTp~ 236 (315)
T 3tnl_A 225 A-------ESVIFTNATGV 236 (315)
T ss_dssp H-------TCSEEEECSST
T ss_pred c-------CCCEEEECccC
Confidence 3 46999998654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=82.14 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++||+++|+|+ ||+|+++++.|++.|++|++++|+.+++++..+++.... .+. ..|+ +++ .
T Consensus 115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~---~~~--~~~~---~~~-------~- 177 (271)
T 1nyt_A 115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQ--ALSM---DEL-------E- 177 (271)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEE--ECCS---GGG-------T-
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC---Cee--EecH---HHh-------c-
Confidence 4678999999998 799999999999999999999999999888777664321 121 1232 211 1
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
. ++.|+||||+|...
T Consensus 178 ~-~~~DivVn~t~~~~ 192 (271)
T 1nyt_A 178 G-HEFDLIINATSSGI 192 (271)
T ss_dssp T-CCCSEEEECCSCGG
T ss_pred c-CCCCEEEECCCCCC
Confidence 1 68999999999753
|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-07 Score=58.80 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=29.1
Q ss_pred ccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 21 LRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
..++|+|..+++|++||+|..|+ .|||++|.
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~---es~We~P~ 34 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTL---ESTWEKPQ 34 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTT---EEESSCCS
T ss_pred CCCCeEEEECCCCCEEEEECCCC---CEEecCCC
Confidence 46789999999999999999999 99999996
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=82.40 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||+++++.+...|++|++++|+.++++.+ +++ . .. ..+|+++.+++.+.+.++...
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~---g--~~---~~~d~~~~~~~~~~~~~~~~~-- 237 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI---G--GE---VFIDFTKEKDIVGAVLKATDG-- 237 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT---T--CC---EEEETTTCSCHHHHHHHHHTS--
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc---C--Cc---eEEecCccHhHHHHHHHHhCC--
Confidence 589999999999999999999999999999999998877543 222 1 11 234887655666666665433
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 238 ~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 GAHGVINVSVS 248 (347)
T ss_dssp CEEEEEECSSC
T ss_pred CCCEEEECCCc
Confidence 79999999984
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-06 Score=87.96 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++++|+++|+|| ||+|+++++.|++. |++|++++|+.+++++..++ . .+..+.+|+++.+++.++++
T Consensus 18 ~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----~---~~~~~~~D~~d~~~l~~~l~-- 87 (467)
T 2axq_A 18 EGRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----S---GSKAISLDVTDDSALDKVLA-- 87 (467)
T ss_dssp -----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----G---TCEEEECCTTCHHHHHHHHH--
T ss_pred ccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----c---CCcEEEEecCCHHHHHHHHc--
Confidence 55778899999998 99999999999998 78999999998887665432 1 24456789999888777664
Q ss_pred HHhCCCeeEEEEccccC
Q psy12836 216 KKENKKINVLINNAGVS 232 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~ 232 (429)
++|+|||+++..
T Consensus 88 -----~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 -----DNDVVISLIPYT 99 (467)
T ss_dssp -----TSSEEEECSCGG
T ss_pred -----CCCEEEECCchh
Confidence 579999999864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-06 Score=70.53 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+++.++|+|+ |.+|.++|+.|.++|++|+++++++++.+...+. .+.++.+|.++++.++++ ...
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~------~~~ 69 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSL------DLE 69 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHS------CCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhC------Ccc
Confidence 4578999998 7799999999999999999999999877665432 245678999998876654 234
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
+.|++|.+.+
T Consensus 70 ~~d~vi~~~~ 79 (141)
T 3llv_A 70 GVSAVLITGS 79 (141)
T ss_dssp TCSEEEECCS
T ss_pred cCCEEEEecC
Confidence 6899998765
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=84.00 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++|+.++++.+.+++ + .. ..+|.++.+++.+.+.++.. +
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~----g-~~---~~~d~~~~~~~~~~~~~~~~--~ 224 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF----G-FD---DAFNYKEESDLTAALKRCFP--N 224 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS----C-CS---EEEETTSCSCSHHHHHHHCT--T
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C-Cc---eEEecCCHHHHHHHHHHHhC--C
Confidence 5899999999999999999999999999999999988776554333 1 11 12477665445555554432 5
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 225 ~~d~vi~~~g~ 235 (345)
T 2j3h_A 225 GIDIYFENVGG 235 (345)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCH
Confidence 79999999983
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=81.47 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++||||+||||+++++.+...|++|++++|+.++++.+.+ + .. . ..+|.++.+..+.+.+... .+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~---g~--~---~~~~~~~~~~~~~~~~~~~--~~ 208 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---GA--W---QVINYREEDLVERLKEITG--GK 208 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---TC--S---EEEETTTSCHHHHHHHHTT--TC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---CC--C---EEEECCCccHHHHHHHHhC--CC
Confidence 58999999999999999999999999999999999887765543 2 11 1 1247776554444443321 23
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|+|+|
T Consensus 209 ~~D~vi~~~g 218 (327)
T 1qor_A 209 KVRVVYDSVG 218 (327)
T ss_dssp CEEEEEECSC
T ss_pred CceEEEECCc
Confidence 6999999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.15 E-value=5e-06 Score=80.80 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++||||+||||+++++.+...|++|++++|+.++++.+.+ + .. . ..+|.++.+..+.+.+... ..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~---g~--~---~~~d~~~~~~~~~i~~~~~--~~ 213 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-L---GC--H---HTINYSTQDFAEVVREITG--GK 213 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---TC--S---EEEETTTSCHHHHHHHHHT--TC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CC--C---EEEECCCHHHHHHHHHHhC--CC
Confidence 58999999999999999999999999999999999887765532 2 11 1 1347776554444443321 23
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1wly_A 214 GVDVVYDSIGK 224 (333)
T ss_dssp CEEEEEECSCT
T ss_pred CCeEEEECCcH
Confidence 79999999985
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-06 Score=73.46 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+++++.++|+|+ |++|..+++.|.+.|++|++++|+.++.+... .. ....+.+|.++.+.++++ .
T Consensus 3 ~~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~----~~~~~~~d~~~~~~l~~~------~ 67 (144)
T 2hmt_A 3 RIKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSL------G 67 (144)
T ss_dssp ---CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT----CSEEEECCTTCHHHHHTT------T
T ss_pred CCcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----CCEEEEeCCCCHHHHHhc------C
Confidence 356788999998 99999999999999999999999887654321 11 123567899887655433 1
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.++.|++|++++.
T Consensus 68 ~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 68 IRNFEYVIVAIGA 80 (144)
T ss_dssp GGGCSEEEECCCS
T ss_pred CCCCCEEEECCCC
Confidence 2468999999874
|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.7e-07 Score=60.40 Aligned_cols=32 Identities=9% Similarity=-0.158 Sum_probs=28.1
Q ss_pred ceecccceecCccceeeeecCCCCcc---------eEEEEEee---ecccCccc
Q psy12836 47 SFQSGTIVTGGIGTTLKMLTGPSSFN---------LVAFIVHV---TIGMDTQL 88 (429)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~lp~~---------~~~~~~~~---~~~~dp~~ 88 (429)
+|||+|||++. +||+| ++|||||. +++.||+.
T Consensus 2 tt~W~~P~~~~----------~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 2 SSGSSGPLERE----------GLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CSSSCCSCCSS----------CCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred eecCcCCCCCC----------CCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 89999999863 67777 99999999 99999985
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.6e-06 Score=81.11 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++|+.++++.+.+++. .. ..+|.++.+..+.+. +.. .+
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~~-~~~--~~ 217 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG-----FD---GAIDYKNEDLAAGLK-REC--PK 217 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----CS---EEEETTTSCHHHHHH-HHC--TT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----CC---EEEECCCHHHHHHHH-Hhc--CC
Confidence 58999999999999999999999999999999999988776544431 11 124766644333333 222 35
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 218 ~~d~vi~~~g~ 228 (336)
T 4b7c_A 218 GIDVFFDNVGG 228 (336)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999999984
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.3e-06 Score=82.08 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=57.6
Q ss_pred CC--CEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RG--KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~g--K~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.| ++++||||+||||+++++.+...|+ +|++++++.++++.+.+++ + .. ..+|.++.+ +.+.+.+...
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~----g-~~---~~~d~~~~~-~~~~~~~~~~ 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL----G-FD---AAINYKKDN-VAEQLRESCP 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS----C-CS---EEEETTTSC-HHHHHHHHCT
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----C-Cc---eEEecCchH-HHHHHHHhcC
Confidence 46 9999999999999999999999999 9999999988776554433 1 11 235777643 3233333222
Q ss_pred hCCCeeEEEEccc
Q psy12836 218 ENKKINVLINNAG 230 (429)
Q Consensus 218 ~~g~iD~lI~nAG 230 (429)
+++|++|+|+|
T Consensus 229 --~~~d~vi~~~G 239 (357)
T 2zb4_A 229 --AGVDVYFDNVG 239 (357)
T ss_dssp --TCEEEEEESCC
T ss_pred --CCCCEEEECCC
Confidence 27999999998
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-06 Score=80.93 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++|+.++++.+ +++. . . ..+|.++.+..+.+.+.. ..+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g---~--~---~~~~~~~~~~~~~~~~~~--~~~ 230 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLG---A--A---AGFNYKKEDFSEATLKFT--KGA 230 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHT---C--S---EEEETTTSCHHHHHHHHT--TTS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcC---C--c---EEEecCChHHHHHHHHHh--cCC
Confidence 589999999999999999999999999999999998887665 3331 1 1 235776654443333222 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 231 ~~d~vi~~~G~ 241 (354)
T 2j8z_A 231 GVNLILDCIGG 241 (354)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCc
Confidence 79999999984
|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.1e-07 Score=66.92 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=31.0
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
..+|++|++..+++||+||+|+.|+ .|||+.|+
T Consensus 42 ~~~~~~W~~~~~~~Gr~YyyN~~T~---~s~We~P~ 74 (75)
T 2jxw_A 42 TAVKTVWVEGLSEDGFTYYYNTETG---ESRWEKPD 74 (75)
T ss_dssp SSCCCSEEEEEETTTEEEEEETTTT---EEESSCCC
T ss_pred cCCCccEEEEECCCCCEEEEECcCC---CEeccCcC
Confidence 3689999999999999999999999 99999996
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.6e-06 Score=79.50 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++|++++++.+ +++ .. . ..+|.++.+..+++.+.. ..+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---ga--~---~~~d~~~~~~~~~~~~~~--~~~ 238 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN---GA--H---EVFNHREVNYIDKIKKYV--GEK 238 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---TC--S---EEEETTSTTHHHHHHHHH--CTT
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHc---CC--C---EEEeCCCchHHHHHHHHc--CCC
Confidence 589999999999999999999999999999999998877643 222 11 1 135777654444433322 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 239 ~~D~vi~~~G~ 249 (351)
T 1yb5_A 239 GIDIIIEMLAN 249 (351)
T ss_dssp CEEEEEESCHH
T ss_pred CcEEEEECCCh
Confidence 79999999984
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1e-05 Score=76.97 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+++||+++|+|+ ||+|++++..|++.|+ +|++++|+.+++++.++++....+...+. ..+..+ +.+.+.
T Consensus 123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~--~~~~~~---l~~~l~--- 193 (283)
T 3jyo_A 123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARG---IEDVIA--- 193 (283)
T ss_dssp TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEE--EECSTT---HHHHHH---
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEE--EcCHHH---HHHHHh---
Confidence 4688999999998 7999999999999999 79999999999998888887654433333 334433 333333
Q ss_pred HhCCCeeEEEEcccc
Q psy12836 217 KENKKINVLINNAGV 231 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~ 231 (429)
..|+|||+...
T Consensus 194 ----~~DiVInaTp~ 204 (283)
T 3jyo_A 194 ----AADGVVNATPM 204 (283)
T ss_dssp ----HSSEEEECSST
T ss_pred ----cCCEEEECCCC
Confidence 24999998754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.5e-05 Score=74.16 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC---hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD---LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~---~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
..+++||+++|+|+ ||.|++++..|++.|+ +|+++.|+ .++++++++++....+ ..+ ...++.+.+...+.+
T Consensus 143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~-~~v--~~~~~~~l~~~~~~l 218 (312)
T 3t4e_A 143 GFDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD-CVV--TVTDLADQHAFTEAL 218 (312)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS-CEE--EEEETTCHHHHHHHH
T ss_pred CCCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC-cce--EEechHhhhhhHhhc
Confidence 45789999999998 8999999999999998 89999999 8888888887765433 222 344666654333333
Q ss_pred HHHHHhCCCeeEEEEccccC
Q psy12836 213 EEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~ 232 (429)
. ..|+|||+-...
T Consensus 219 ~-------~~DiIINaTp~G 231 (312)
T 3t4e_A 219 A-------SADILTNGTKVG 231 (312)
T ss_dssp H-------HCSEEEECSSTT
T ss_pred c-------CceEEEECCcCC
Confidence 3 349999986543
|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-06 Score=51.16 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=25.0
Q ss_pred ccchhhccCCceEEEEeceeeeeeceecccc
Q psy12836 23 SALWELSSGAGRVKYYDCMTYVYLSFQSGTI 53 (429)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (429)
+||| -+...|+.||+|..|+ .|||+.|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~---~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQK---TKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTT---EEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCC---CEeccCC
Confidence 5899 7889999999999999 9999977
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=77.44 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++||||+||||+++++.+... |++|+++++++++++.+. ++ .. . ..+|.++.+..+. +.++...
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~---g~--~---~~~~~~~~~~~~~-~~~~~~~- 238 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA---GA--D---YVINASMQDPLAE-IRRITES- 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH---TC--S---EEEETTTSCHHHH-HHHHTTT-
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---CC--C---EEecCCCccHHHH-HHHHhcC-
Confidence 5899999999999999999999999 999999999988876553 33 11 1 1246666433322 2222211
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+++|++|+|+|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 589999999985
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=79.59 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+++|++|+|+|| ||||..+++.+...|++|++++++. ++.+.+ +++ + ...+ | .+ ++.+.+.+
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~----g---a~~v--~-~~--~~~~~~~~- 242 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET----K---TNYY--N-SS--NGYDKLKD- 242 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH----T---CEEE--E-CT--TCSHHHHH-
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh----C---Ccee--c-hH--HHHHHHHH-
Confidence 566999999999 9999999999999999999999988 776433 333 1 1222 5 54 22222222
Q ss_pred HHhCCCeeEEEEcccc
Q psy12836 216 KKENKKINVLINNAGV 231 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~ 231 (429)
. . +++|++|+++|.
T Consensus 243 ~-~-~~~d~vid~~g~ 256 (366)
T 2cdc_A 243 S-V-GKFDVIIDATGA 256 (366)
T ss_dssp H-H-CCEEEEEECCCC
T ss_pred h-C-CCCCEEEECCCC
Confidence 2 2 689999999985
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=81.47 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC---------CHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA---------SQESIRAF 211 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls---------~~~sv~~~ 211 (429)
.|++|+|+||+||||.++++.+...|++|++++++.++++.+ +++ +....+.....|+. +.++++.+
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~l---Ga~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RAL---GCDLVINRAELGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---TCCCEEEHHHHTCCTTGGGCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc---CCCEEEecccccccccccccccccchhhhHH
Confidence 589999999999999999999999999999999998887655 222 11111111111221 12344555
Q ss_pred HHHHHHhCC-CeeEEEEcccc
Q psy12836 212 AEEVKKENK-KINVLINNAGV 231 (429)
Q Consensus 212 ~~~i~~~~g-~iD~lI~nAG~ 231 (429)
.+++.+..+ .+|++|+|+|.
T Consensus 296 ~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp HHHHHHHHSSCCSEEEECSCH
T ss_pred HHHHHHHhCCCceEEEECCCc
Confidence 666655434 79999999984
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-05 Score=76.08 Aligned_cols=79 Identities=18% Similarity=0.356 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++++.++++.+.+ + .. .. .+|.++.+..+.+.+ .. .+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga-~~----~~~~~~~~~~~~~~~-~~--~~ 234 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-L---GA-KR----GINYRSEDFAAVIKA-ET--GQ 234 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---TC-SE----EEETTTSCHHHHHHH-HH--SS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CC-CE----EEeCCchHHHHHHHH-Hh--CC
Confidence 58999999999999999999999999999999999988765543 2 11 11 246665443333333 32 45
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 235 g~Dvvid~~g~ 245 (353)
T 4dup_A 235 GVDIILDMIGA 245 (353)
T ss_dssp CEEEEEESCCG
T ss_pred CceEEEECCCH
Confidence 89999999984
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=74.70 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||+.+++.+...|++|++++|+.++++.+. ++ .. .. .+|.++.+ +.+.+.+.. ..+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~---ga-~~----~~d~~~~~-~~~~~~~~~-~~~ 234 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL---GA-DE----TVNYTHPD-WPKEVRRLT-GGK 234 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH---TC-SE----EEETTSTT-HHHHHHHHT-TTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc---CC-CE----EEcCCccc-HHHHHHHHh-CCC
Confidence 5899999999999999999999999999999999988876653 22 11 11 25777643 222222221 124
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|+|+|
T Consensus 235 ~~d~vi~~~g 244 (343)
T 2eih_A 235 GADKVVDHTG 244 (343)
T ss_dssp CEEEEEESSC
T ss_pred CceEEEECCC
Confidence 7999999998
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=73.59 Aligned_cols=159 Identities=13% Similarity=0.011 Sum_probs=95.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcC----hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-------KVIMACRD----LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~----~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~ 211 (429)
..++||||+|++|..++..|+.+|. +|++++++ .++++....++...... .. .|+....+..++
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~-~~----~~i~~~~~~~~a 80 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP-LL----AGMTAHADPMTA 80 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCT-TE----EEEEEESSHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhccc-cc----CcEEEecCcHHH
Confidence 4799999999999999999999885 79999998 66565555555442111 11 133222222222
Q ss_pred HHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 212 AEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
+...|++|+.||...... .+. ...+..|......+.+.+..+ ....++|
T Consensus 81 -------l~~aD~Vi~~ag~~~~~g-~~r---~dl~~~N~~i~~~i~~~i~~~--------------------~~p~a~i 129 (329)
T 1b8p_A 81 -------FKDADVALLVGARPRGPG-MER---KDLLEANAQIFTVQGKAIDAV--------------------ASRNIKV 129 (329)
T ss_dssp -------TTTCSEEEECCCCCCCTT-CCH---HHHHHHHHHHHHHHHHHHHHH--------------------SCTTCEE
T ss_pred -------hCCCCEEEEeCCCCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHh--------------------cCCCeEE
Confidence 335799999999764322 232 235677777766666555432 1245799
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE 340 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~ 340 (429)
|++|.........-.. ....++....|+.++.--..+...++..+.
T Consensus 130 i~~SNPv~~~t~~~~~---~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg 175 (329)
T 1b8p_A 130 LVVGNPANTNAYIAMK---SAPSLPAKNFTAMLRLDHNRALSQIAAKTG 175 (329)
T ss_dssp EECSSSHHHHHHHHHH---TCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred EEccCchHHHHHHHHH---HcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence 9998754321110000 000123444577777665666777777764
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.3e-05 Score=70.98 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=58.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++++|+++|+|+ ||+|++++..|++.|++|+++.|+.+++++..+++.... .+. .+|+. ++ .
T Consensus 115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~---~~~--~~~~~---~~-------~- 177 (272)
T 1p77_A 115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQ--AVSMD---SI-------P- 177 (272)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEE--EEEGG---GC-------C-
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC---CeE--EeeHH---Hh-------c-
Confidence 4678999999998 799999999999999999999999999888877764321 222 23431 11 0
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
. +..|+|||+++...
T Consensus 178 ~-~~~DivIn~t~~~~ 192 (272)
T 1p77_A 178 L-QTYDLVINATSAGL 192 (272)
T ss_dssp C-SCCSEEEECCCC--
T ss_pred c-CCCCEEEECCCCCC
Confidence 1 47899999998754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=5e-05 Score=73.63 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++++.++++.+ +++ .. .. .+|..+.+..+.+.+.. ...
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---ga-~~----~~~~~~~~~~~~~~~~~--~~~ 216 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY---GA-EY----LINASKEDILRQVLKFT--NGK 216 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---TC-SE----EEETTTSCHHHHHHHHT--TTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc---CC-cE----EEeCCCchHHHHHHHHh--CCC
Confidence 589999999999999999999999999999999998887643 332 11 11 24665543333332221 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 217 g~D~vid~~g~ 227 (334)
T 3qwb_A 217 GVDASFDSVGK 227 (334)
T ss_dssp CEEEEEECCGG
T ss_pred CceEEEECCCh
Confidence 79999999985
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=71.96 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++++||+||+||||...++.+...|++|++++++.++++.+. ++ +. .. ..|..+.+..+.+.+.... .+
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~---Ga-~~----~~~~~~~~~~~~v~~~~~~--~g 233 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI---GA-AH----VLNEKAPDFEATLREVMKA--EQ 233 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH---TC-SE----EEETTSTTHHHHHHHHHHH--HC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---CC-CE----EEECCcHHHHHHHHHHhcC--CC
Confidence 489999999999999999999999999999999998876553 22 11 11 2355554333333222211 27
Q ss_pred eeEEEEcccc
Q psy12836 222 INVLINNAGV 231 (429)
Q Consensus 222 iD~lI~nAG~ 231 (429)
+|++|+|+|.
T Consensus 234 ~D~vid~~g~ 243 (349)
T 3pi7_A 234 PRIFLDAVTG 243 (349)
T ss_dssp CCEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999985
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.7e-05 Score=72.51 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||.++++.+...|++|++++++.++++.+. ++ .. .. ..|.++.+..+.+.+.. ...
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~---Ga-~~----~~~~~~~~~~~~~~~~~--~~~ 208 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL---GA-WE----TIDYSHEDVAKRVLELT--DGK 208 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH---TC-SE----EEETTTSCHHHHHHHHT--TTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---CC-CE----EEeCCCccHHHHHHHHh--CCC
Confidence 5899999999999999999999999999999999998877553 22 11 11 24665544333333222 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+|+|.
T Consensus 209 g~Dvvid~~g~ 219 (325)
T 3jyn_A 209 KCPVVYDGVGQ 219 (325)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCh
Confidence 79999999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=59.76 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++.++|+|+ |.+|..+++.|.+.|++|++++|+.++.+...++. .+..+..|.++.+.+.+. ...+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~------~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA------GIED 69 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT------TTTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHHc------Cccc
Confidence 457889987 99999999999999999999999987765543321 233567788887654321 1346
Q ss_pred eeEEEEccc
Q psy12836 222 INVLINNAG 230 (429)
Q Consensus 222 iD~lI~nAG 230 (429)
.|++|.+.+
T Consensus 70 ~d~vi~~~~ 78 (140)
T 1lss_A 70 ADMYIAVTG 78 (140)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEeeC
Confidence 899999864
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.7e-05 Score=72.18 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+||+||||..+++.+...|++|++++++.++++.+.+ + .. .. .+|..+.+..+.+.+ .. ...
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---ga-~~----~~~~~~~~~~~~~~~-~~-~~~ 212 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L---GA-AY----VIDTSTAPLYETVME-LT-NGI 212 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---TC-SE----EEETTTSCHHHHHHH-HT-TTS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C---CC-cE----EEeCCcccHHHHHHH-Hh-CCC
Confidence 58999999999999999999998999999999999988765543 2 11 11 236655433333322 21 123
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+|+|.
T Consensus 213 g~Dvvid~~g~ 223 (340)
T 3gms_A 213 GADAAIDSIGG 223 (340)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCC
Confidence 79999999985
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.1e-05 Score=72.62 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++++|+++|+|+ ||+|++++..|++.|+ +|+++.|+.+++++..+++..... . +.+.+++ .
T Consensus 137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~--~-------~~~~~~~-------~ 199 (297)
T 2egg_A 137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS--A-------YFSLAEA-------E 199 (297)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC--C-------EECHHHH-------H
T ss_pred CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC--c-------eeeHHHH-------H
Confidence 4678999999998 7999999999999998 999999999988877766532110 1 1122222 2
Q ss_pred HhCCCeeEEEEccccCC
Q psy12836 217 KENKKINVLINNAGVSG 233 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~ 233 (429)
+.....|+||++.+...
T Consensus 200 ~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 200 TRLAEYDIIINTTSVGM 216 (297)
T ss_dssp HTGGGCSEEEECSCTTC
T ss_pred hhhccCCEEEECCCCCC
Confidence 22346799999998653
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00023 Score=68.93 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=65.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
..++||||+|.+|..++..|+++| .+|++++++.+ +....++........+.. +++..+.+++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~------- 75 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAALT------- 75 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT-------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHcC-------
Confidence 479999999999999999999999 78999998776 222333332211112222 223444444433
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHH
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 262 (429)
..|++|++||...... .+. ...+.+|+.+...+.+.+.
T Consensus 76 gaDvVi~~ag~~~~~g-~~r---~dl~~~N~~~~~~i~~~i~ 113 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPG-MTR---DDLFKINAGIVKTLCEGIA 113 (326)
T ss_dssp TCSEEEECCCCCCCSS-CCC---SHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcCCCCC-CCH---HHHHHHHHHHHHHHHHHHH
Confidence 5699999999754322 122 2346777777666665554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.1e-05 Score=73.95 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+||+||||..+++.+...|++|++++++.++.+.+.+ + .. ..+ .|.. +++.+.+.+.. ...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~---ga-~~v----~~~~--~~~~~~v~~~~-~~~ 226 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V---GA-DIV----LPLE--EGWAKAVREAT-GGA 226 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H---TC-SEE----EESS--TTHHHHHHHHT-TTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CC-cEE----ecCc--hhHHHHHHHHh-CCC
Confidence 58999999999999999999999999999999999988765433 2 11 111 2444 23333333221 112
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+|+|.
T Consensus 227 g~Dvvid~~g~ 237 (342)
T 4eye_A 227 GVDMVVDPIGG 237 (342)
T ss_dssp CEEEEEESCC-
T ss_pred CceEEEECCch
Confidence 69999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=68.50 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
++++++|+|.|+ ||+|.++|+.|+..|. +|.+++++. .|.+.+++.+....+...+..+
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 456789999997 7999999999999997 899999987 7888888888776666677777
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEccc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG 230 (429)
..++++ +.+.++++ ..|++|.+..
T Consensus 107 ~~~~~~-~~~~~~~~-------~~DvVi~~~d 130 (249)
T 1jw9_B 107 NALLDD-AELAALIA-------EHDLVLDCTD 130 (249)
T ss_dssp CSCCCH-HHHHHHHH-------TSSEEEECCS
T ss_pred eccCCH-hHHHHHHh-------CCCEEEEeCC
Confidence 766753 34444432 5699998753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=62.04 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.++.++|.|+ |.+|+.+++.|.+.|++|++++++ .++.+...+... ..+.++..|.++++.++++ ..
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a------~i 69 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKA------GI 69 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHH------TT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHc------Ch
Confidence 3456888886 999999999999999999999997 455544433221 1356778999998876543 12
Q ss_pred CCeeEEEEccc
Q psy12836 220 KKINVLINNAG 230 (429)
Q Consensus 220 g~iD~lI~nAG 230 (429)
.+.|.+|.+.+
T Consensus 70 ~~ad~vi~~~~ 80 (153)
T 1id1_A 70 DRCRAILALSD 80 (153)
T ss_dssp TTCSEEEECSS
T ss_pred hhCCEEEEecC
Confidence 35688888764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00013 Score=71.86 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+ |+||..+++.+...|++|++++++.++.+.+.+++ +... .+|..+.+.+++ ..+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l----Ga~~----v~~~~~~~~~~~-------~~~ 250 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF----GADS----FLVSRDQEQMQA-------AAG 250 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS----CCSE----EEETTCHHHHHH-------TTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----CCce----EEeccCHHHHHH-------hhC
Confidence 6899999996 99999999999999999999999998876654333 1111 246666543322 235
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
.+|++|+++|..
T Consensus 251 ~~D~vid~~g~~ 262 (366)
T 1yqd_A 251 TLDGIIDTVSAV 262 (366)
T ss_dssp CEEEEEECCSSC
T ss_pred CCCEEEECCCcH
Confidence 799999999863
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00043 Score=65.53 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=58.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++||+++|+|+ ||+|++++..|++.|+ +|+++.|+.++.++..+++.... .+... ++.+ +
T Consensus 121 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~---l------- 184 (281)
T 3o8q_A 121 QVLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQ---L------- 184 (281)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGG---C-------
T ss_pred CCCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHH---h-------
Confidence 45789999999998 6999999999999996 99999999999988888775432 23332 2211 1
Q ss_pred HHhCCCeeEEEEccccC
Q psy12836 216 KKENKKINVLINNAGVS 232 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~ 232 (429)
....|+|||+....
T Consensus 185 ---~~~aDiIInaTp~g 198 (281)
T 3o8q_A 185 ---KQSYDVIINSTSAS 198 (281)
T ss_dssp ---CSCEEEEEECSCCC
T ss_pred ---cCCCCEEEEcCcCC
Confidence 03689999987554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00037 Score=68.42 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+++++|+|+|+ ||+|+++++.+...|++|++++|+.++++.+.+.... .+ .++..+.+++.+.+.
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~----- 229 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RV---ELLYSNSAEIETAVA----- 229 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GS---EEEECCHHHHHHHHH-----
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----ee---EeeeCCHHHHHHHHc-----
Confidence 477899999999 9999999999999999999999999988776554321 11 122334444443332
Q ss_pred CCCeeEEEEccccCC
Q psy12836 219 NKKINVLINNAGVSG 233 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~ 233 (429)
..|++|++++...
T Consensus 230 --~~DvVI~~~~~~~ 242 (361)
T 1pjc_A 230 --EADLLIGAVLVPG 242 (361)
T ss_dssp --TCSEEEECCCCTT
T ss_pred --CCCEEEECCCcCC
Confidence 5799999998743
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00026 Score=71.75 Aligned_cols=86 Identities=15% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEE-EEEee--------CCCHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVL-CRKCD--------LASQESIRAF 211 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~-~~~~D--------ls~~~sv~~~ 211 (429)
.|++|+|+||+|+||...++.+...|++|++++++.++++.+ +++. . ..+. ....| .++.++++++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~lG---a-~~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAMG---A-EAIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHT---C-CEEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HhhC---C-cEEEecCcCcccccccccccchHHHHHH
Confidence 589999999999999999999999999999999988887655 3331 1 1111 00111 2355666777
Q ss_pred HHHHHHhC--CCeeEEEEcccc
Q psy12836 212 AEEVKKEN--KKINVLINNAGV 231 (429)
Q Consensus 212 ~~~i~~~~--g~iD~lI~nAG~ 231 (429)
.+++.+.. ..+|++|.++|.
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHhCCCCCcEEEEcCCc
Confidence 77776643 379999999884
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.52 E-value=9.7e-05 Score=72.71 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=56.7
Q ss_pred CCCCCCC--EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGK--IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK--~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..+++|| .|+|.|| |++|+.+|+.|++ ..+|.+++++.++++++.+ .+..+.+|++|.+++.++++
T Consensus 9 ~~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~~- 76 (365)
T 3abi_A 9 HHHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVMK- 76 (365)
T ss_dssp -------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHHT-
T ss_pred cccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHHh-
Confidence 3445554 5888898 9999999999875 5799999999887765422 24457899999998888775
Q ss_pred HHHhCCCeeEEEEccccC
Q psy12836 215 VKKENKKINVLINNAGVS 232 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~ 232 (429)
+.|+||++++..
T Consensus 77 ------~~DvVi~~~p~~ 88 (365)
T 3abi_A 77 ------EFELVIGALPGF 88 (365)
T ss_dssp ------TCSEEEECCCGG
T ss_pred ------CCCEEEEecCCc
Confidence 459999998753
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0005 Score=65.31 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh------------------hHHHHHHHHHhhhcCCceEEE
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL------------------DKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~ 197 (429)
-.++++++|+|.|+ ||+|.++++.|+..|. ++.+++.+. .|.+.+++.++...+..++..
T Consensus 31 q~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~ 109 (292)
T 3h8v_A 31 YEKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEV 109 (292)
T ss_dssp -CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEE
Confidence 34678899999987 8999999999999996 799998876 677888888888888888888
Q ss_pred EEeeCCCHHHHHHHHHHHHHh----CCCeeEEEEcc
Q psy12836 198 RKCDLASQESIRAFAEEVKKE----NKKINVLINNA 229 (429)
Q Consensus 198 ~~~Dls~~~sv~~~~~~i~~~----~g~iD~lI~nA 229 (429)
+..++++.+.++.+++.+... ....|+||.+.
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~ 145 (292)
T 3h8v_A 110 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV 145 (292)
T ss_dssp ECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred ecccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence 888998877777777654321 13689998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00041 Score=68.54 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
..+.|++++|+|+ |+||+++++.+...|++|++.+|+.++++.+.+.+. ..+ .++.++.+++.+++.
T Consensus 164 ~~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g-----~~~---~~~~~~~~~l~~~l~---- 230 (377)
T 2vhw_A 164 PGVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFC-----GRI---HTRYSSAYELEGAVK---- 230 (377)
T ss_dssp TTBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-----TSS---EEEECCHHHHHHHHH----
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcC-----Cee---EeccCCHHHHHHHHc----
Confidence 3688999999999 999999999999999999999999988766544331 111 234556666655543
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..|++|++++...
T Consensus 231 ---~aDvVi~~~~~p~ 243 (377)
T 2vhw_A 231 ---RADLVIGAVLVPG 243 (377)
T ss_dssp ---HCSEEEECCCCTT
T ss_pred ---CCCEEEECCCcCC
Confidence 4699999988643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0003 Score=68.42 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|+++||+||+|+||..+++.+...|++|+++ ++.++++.+ +++ + ... +| .+.+ +.+.+.+.. ...
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l---G--a~~----i~-~~~~-~~~~~~~~~-~~~ 215 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL---G--ATP----ID-ASRE-PEDYAAEHT-AGQ 215 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH---T--SEE----EE-TTSC-HHHHHHHHH-TTS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc---C--CCE----ec-cCCC-HHHHHHHHh-cCC
Confidence 58999999999999999999999999999999 777776543 333 1 121 45 3322 333333322 224
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+|+|.
T Consensus 216 g~D~vid~~g~ 226 (343)
T 3gaz_A 216 GFDLVYDTLGG 226 (343)
T ss_dssp CEEEEEESSCT
T ss_pred CceEEEECCCc
Confidence 79999999983
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=68.69 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|| ||||..+++.+...|++|++++++.++++.+. ++ .. .. .+|.++.+ +.+.+.++. +
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l---Ga-~~----~~d~~~~~-~~~~~~~~~---~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-EL---GA-DL----VVNPLKED-AAKFMKEKV---G 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HT---TC-SE----EECTTTSC-HHHHHHHHH---S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HC---CC-CE----EecCCCcc-HHHHHHHHh---C
Confidence 4889999999 88999999999999999999999988876543 22 11 11 24766532 222233322 5
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+++|.
T Consensus 230 ~~d~vid~~g~ 240 (339)
T 1rjw_A 230 GVHAAVVTAVS 240 (339)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEECCCC
Confidence 79999999984
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00049 Score=67.00 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+|+||...++.+...|++|++++++.++++.+.+ + +. ..+ .|..+ ++.+.+.+. ..+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga-~~v----i~~~~--~~~~~~~~~--~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-M---GA-DIV----LNHKE--SLLNQFKTQ--GIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-H---TC-SEE----ECTTS--CHHHHHHHH--TCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CC-cEE----EECCc--cHHHHHHHh--CCC
Confidence 58999999999999999999999999999999999888765543 3 11 111 24433 222333333 234
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|+|+|.
T Consensus 217 g~Dvv~d~~g~ 227 (346)
T 3fbg_A 217 LVDYVFCTFNT 227 (346)
T ss_dssp CEEEEEESSCH
T ss_pred CccEEEECCCc
Confidence 79999999884
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=68.49 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+||||..+++.+...|++|++++++.++++.+.+ + + ... .+|..+.+ +.+.+.+.. .+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~----G-a~~---~~~~~~~~-~~~~~~~~~--~~ 230 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-L----G-CDR---PINYKTEP-VGTVLKQEY--PE 230 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T----T-CSE---EEETTTSC-HHHHHHHHC--TT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-c----C-CcE---EEecCChh-HHHHHHHhc--CC
Confidence 58999999999999999999999999999999999887765432 2 1 111 23554432 333333321 24
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|+|+|
T Consensus 231 g~D~vid~~g 240 (362)
T 2c0c_A 231 GVDVVYESVG 240 (362)
T ss_dssp CEEEEEECSC
T ss_pred CCCEEEECCC
Confidence 7999999998
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=9.5e-05 Score=70.80 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=61.4
Q ss_pred CCCCCE-EEEEcCCC-----------------c-HHHHHHHHHHHcCCEEEEEEcChhHHH------H--HHHHHhhhc-
Q psy12836 139 SARGKI-VIVTGANT-----------------G-IGKAIARELAKRKAKVIMACRDLDKCE------K--ARKEVVLES- 190 (429)
Q Consensus 139 ~l~gK~-vLITGass-----------------G-IG~aiA~~La~~G~~Vil~~R~~~~~~------~--~~~~l~~~~- 190 (429)
+++||. ||||+|.. | .|.++|++++++|+.|+++.+...... . ..+.+....
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~ 112 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGP 112 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhccccc
Confidence 456777 99998775 6 999999999999999999988543110 0 011110000
Q ss_pred CCceEEEEEeeCCCHHHHHHHHHHH------------------------------HHhCCCeeEEEEccccCC
Q psy12836 191 KNKYVLCRKCDLASQESIRAFAEEV------------------------------KKENKKINVLINNAGVSG 233 (429)
Q Consensus 191 ~~~~v~~~~~Dls~~~sv~~~~~~i------------------------------~~~~g~iD~lI~nAG~~~ 233 (429)
....+..+.+|+.+.+++.+++.+. .+.++..|++|.+|++..
T Consensus 113 ~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsD 185 (313)
T 1p9o_A 113 ALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSD 185 (313)
T ss_dssp -CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCS
T ss_pred cccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhh
Confidence 0112345666777766666665443 244578899999999864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00024 Score=67.77 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~~ 219 (429)
.|++++|+||+||+|..+++.+...|++|+.++++.++.+.+. ++ .. .. ..|..+ .+. .+++
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~---ga-~~----~~~~~~~~~~----~~~~---- 187 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL---GA-EE----AATYAEVPER----AKAW---- 187 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT---TC-SE----EEEGGGHHHH----HHHT----
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc---CC-CE----EEECCcchhH----HHHh----
Confidence 5899999999999999999999999999999999988876543 22 11 11 246554 322 2222
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+++|++|+ +|.
T Consensus 188 ~~~d~vid-~g~ 198 (302)
T 1iz0_A 188 GGLDLVLE-VRG 198 (302)
T ss_dssp TSEEEEEE-CSC
T ss_pred cCceEEEE-CCH
Confidence 57999999 874
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0016 Score=62.23 Aligned_cols=101 Identities=19% Similarity=0.099 Sum_probs=63.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEc--ChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACR--DLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R--~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.++||||+|.+|..++..|+.+|. +++++++ +.++++....++..... ...+.+.. | +.+ .
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~-----------a 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYE-----------D 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHH-----------H
Confidence 589999999999999999999885 6999998 77766544444433211 11222221 2 211 1
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 262 (429)
+...|++|+.||...... .+.+ ..+..|+.+...+.+.+.
T Consensus 68 ~~~aDvVi~~ag~~~~~g-~~r~---dl~~~N~~i~~~i~~~i~ 107 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQPG-QTRI---DLAGDNAPIMEDIQSSLD 107 (303)
T ss_dssp GTTCSEEEECCCCCCCTT-CCHH---HHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCC-CCHH---HHHHHHHHHHHHHHHHHH
Confidence 246799999999764322 2322 346777776555555443
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=63.64 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=64.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEc--ChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACR--DLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R--~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++||||+|++|..++..|+.+|. +++++++ +.++++....++..... +..+.+...| | ++ .+
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--d--~l-------~~ 70 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES--D--EN-------LR 70 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE--T--TC-------GG
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC--c--ch-------HH
Confidence 589999999999999999999884 6888998 76655543344432111 1111211111 0 11 11
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHH
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 262 (429)
.+...|++|+.||...... .+. ...+.+|+.+...+.+.+.
T Consensus 71 al~gaD~Vi~~Ag~~~~~g-~~r---~dl~~~N~~i~~~i~~~i~ 111 (313)
T 1hye_A 71 IIDESDVVIITSGVPRKEG-MSR---MDLAKTNAKIVGKYAKKIA 111 (313)
T ss_dssp GGTTCSEEEECCSCCCCTT-CCH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCCCC-CcH---HHHHHHHHHHHHHHHHHHH
Confidence 2346799999999764322 222 3447788887666666654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=62.32 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+..++.++|.|+ |.+|..+++.|.+.|++|++++|++++++.+.. . . ....+..|.++.+.+.++
T Consensus 15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~----~-~--g~~~~~~d~~~~~~l~~~------ 80 (155)
T 2g1u_A 15 KKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS----E-F--SGFTVVGDAAEFETLKEC------ 80 (155)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT----T-C--CSEEEESCTTSHHHHHTT------
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh----c-C--CCcEEEecCCCHHHHHHc------
Confidence 3556789999996 999999999999999999999999877543210 1 1 233556788876544321
Q ss_pred hCCCeeEEEEccc
Q psy12836 218 ENKKINVLINNAG 230 (429)
Q Consensus 218 ~~g~iD~lI~nAG 230 (429)
.....|++|.+.+
T Consensus 81 ~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 81 GMEKADMVFAFTN 93 (155)
T ss_dssp TGGGCSEEEECSS
T ss_pred CcccCCEEEEEeC
Confidence 1235799998876
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00087 Score=56.25 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+++++ ++|.|+ |.+|..+|+.|.+.|++|+++++++++.+.+.+. .+.++..|.++++.++++
T Consensus 4 ~~~~~~-viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a------ 67 (140)
T 3fwz_A 4 VDICNH-ALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLA------ 67 (140)
T ss_dssp CCCCSC-EEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHT------
T ss_pred ccCCCC-EEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhc------
Confidence 345554 666686 8899999999999999999999999887765431 345678999998866553
Q ss_pred hCCCeeEEEEccc
Q psy12836 218 ENKKINVLINNAG 230 (429)
Q Consensus 218 ~~g~iD~lI~nAG 230 (429)
...+.|.+|.+.+
T Consensus 68 ~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 68 HLECAKWLILTIP 80 (140)
T ss_dssp TGGGCSEEEECCS
T ss_pred CcccCCEEEEECC
Confidence 1125688887754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00043 Score=67.39 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|+|| |+||..+++.+...|+ +|++++++.++++.+. ++. . .. ..|..+.+ +.+.+.++. ..
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~G---a-~~----~~~~~~~~-~~~~v~~~~-~g 234 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVG---A-DY----VINPFEED-VVKEVMDIT-DG 234 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHT---C-SE----EECTTTSC-HHHHHHHHT-TT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhC---C-CE----EECCCCcC-HHHHHHHHc-CC
Confidence 7899999999 9999999999989999 9999999988776543 331 1 11 23554432 222222221 11
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|+++|.
T Consensus 235 ~g~D~vid~~g~ 246 (348)
T 2d8a_A 235 NGVDVFLEFSGA 246 (348)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 269999999984
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=62.84 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++.++.++|.|+ |.+|..+|+.|.+. |++|+++++++++.+.+.+ . .+..+.+|.++.+.++++ .
T Consensus 36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~-----~ 101 (183)
T 3c85_A 36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERI-----L 101 (183)
T ss_dssp CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTB-----C
T ss_pred CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhc-----c
Confidence 566777888885 99999999999999 9999999999987765432 1 233567799887654432 0
Q ss_pred hCCCeeEEEEccc
Q psy12836 218 ENKKINVLINNAG 230 (429)
Q Consensus 218 ~~g~iD~lI~nAG 230 (429)
...+.|++|.+.+
T Consensus 102 ~~~~ad~vi~~~~ 114 (183)
T 3c85_A 102 DTGHVKLVLLAMP 114 (183)
T ss_dssp SCCCCCEEEECCS
T ss_pred CCCCCCEEEEeCC
Confidence 1346799998765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00049 Score=64.82 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=44.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVV 187 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~ 187 (429)
..+++||+++|+|+ ||+|++++..|++.|+ +|++++|+.++.++.++++.
T Consensus 115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~ 165 (272)
T 3pwz_A 115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELD 165 (272)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred CCCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence 45789999999998 6999999999999996 99999999999988887764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00096 Score=65.39 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+| +|++|...++.+...|++|++++++.++++.+ +++. . .. ..| .+.+++.+.+.++. ...
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lG---a-~~----vi~-~~~~~~~~~v~~~~-~g~ 256 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FALG---A-DH----GIN-RLEEDWVERVYALT-GDR 256 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHT---C-SE----EEE-TTTSCHHHHHHHHH-TTC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHcC---C-CE----EEc-CCcccHHHHHHHHh-CCC
Confidence 589999999 89999999998889999999999998887654 3331 1 11 235 33333333333332 123
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
++|++|.++|
T Consensus 257 g~D~vid~~g 266 (363)
T 3uog_A 257 GADHILEIAG 266 (363)
T ss_dssp CEEEEEEETT
T ss_pred CceEEEECCC
Confidence 7999999998
|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=50.65 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.6
Q ss_pred ecCccceeeeecCCCCcc---------eEEEEEee---ecccCcccccccchhh
Q psy12836 55 TGGIGTTLKMLTGPSSFN---------LVAFIVHV---TIGMDTQLVFPKQKIC 96 (429)
Q Consensus 55 ~~~~~~~~~~~~~~lp~~---------~~~~~~~~---~~~~dp~~~~~~~~~~ 96 (429)
||+ +|+..++||.| ++|||||+ +++.|||..+++++..
T Consensus 2 ~g~----~~~~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~~~~~ 51 (54)
T 1wmv_A 2 SAK----RKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNP 51 (54)
T ss_dssp CCT----TCCCSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCCCCCS
T ss_pred CCc----ccCcCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCccccccCC
Confidence 566 67788899999 89999999 9999999998887653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00017 Score=60.85 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++++|.|+ |++|+.+++.|.+.|++|++.+|+.++.++..+++. ..+ .+..+.+ ++++ .
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~-----~~~----~~~~~~~---~~~~-------~ 80 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE-----YEY----VLINDID---SLIK-------N 80 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT-----CEE----EECSCHH---HHHH-------T
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC-----Cce----EeecCHH---HHhc-------C
Confidence 889999997 999999999999999999999999998877666542 111 1333432 2232 4
Q ss_pred eeEEEEccccC
Q psy12836 222 INVLINNAGVS 232 (429)
Q Consensus 222 iD~lI~nAG~~ 232 (429)
.|++|++.+..
T Consensus 81 ~Divi~at~~~ 91 (144)
T 3oj0_A 81 NDVIITATSSK 91 (144)
T ss_dssp CSEEEECSCCS
T ss_pred CCEEEEeCCCC
Confidence 69999988764
|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=9.4e-05 Score=54.02 Aligned_cols=31 Identities=16% Similarity=-0.047 Sum_probs=28.1
Q ss_pred cchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 24 ALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
-|-+-.|+||||||+|..|| .|+|+.|-.=+
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk---~S~WekP~eLk 51 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTR---LSMWDRPDDLI 51 (73)
T ss_dssp SCEEEEESSSCEEEEETTTT---EECSSCCTTTT
T ss_pred CcEEEECCCCCEEEecCccc---ceeccCChHhc
Confidence 49998999999999999999 99999997544
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0015 Score=60.76 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .|.+.+++.++...+..++..+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 466889999998 7799999999999997 788886643 6777788888777776677777
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
..++++ +.+.++++ ..|+||++.
T Consensus 104 ~~~~~~-~~~~~~~~-------~~DvVi~~~ 126 (251)
T 1zud_1 104 QQRLTG-EALKDAVA-------RADVVLDCT 126 (251)
T ss_dssp CSCCCH-HHHHHHHH-------HCSEEEECC
T ss_pred eccCCH-HHHHHHHh-------cCCEEEECC
Confidence 666643 44555544 359999874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=65.13 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+|+||..+++.+...|++|+.++ +.++.+.+ +++ +. .. .+|..+.+. .+++.+ .+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~l---Ga-~~----v~~~~~~~~----~~~~~~-~~ 247 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RKL---GA-DD----VIDYKSGSV----EEQLKS-LK 247 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHT---TC-SE----EEETTSSCH----HHHHHT-SC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HHc---CC-CE----EEECCchHH----HHHHhh-cC
Confidence 589999999999999999998888999999988 45555433 332 11 11 235554322 223322 35
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|+|+|.
T Consensus 248 g~D~vid~~g~ 258 (375)
T 2vn8_A 248 PFDFILDNVGG 258 (375)
T ss_dssp CBSEEEESSCT
T ss_pred CCCEEEECCCC
Confidence 79999999984
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00087 Score=60.65 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=56.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++|.|+ |.+|..+|+.|.++|++|+++++++++.+...++. ...++..|.++.+.++++ ...+.|
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a------~i~~ad 67 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA------EVSKND 67 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH------TCCTTC
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc------CcccCC
Confidence 4789997 89999999999999999999999998877654432 245678999998776643 124568
Q ss_pred EEEEccc
Q psy12836 224 VLINNAG 230 (429)
Q Consensus 224 ~lI~nAG 230 (429)
++|.+.+
T Consensus 68 ~vi~~~~ 74 (218)
T 3l4b_C 68 VVVILTP 74 (218)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 8887654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0012 Score=65.71 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++.|++++|.|+ |+||+.+++.|...|+ +|++++|+.+++++..+++. .. . .+.. ++.+.+
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g-----~~--~--~~~~---~l~~~l----- 225 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----GE--A--VRFD---ELVDHL----- 225 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----CE--E--CCGG---GHHHHH-----
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-----Cc--e--ecHH---hHHHHh-----
Confidence 478999999998 9999999999999999 99999999988766655542 11 1 2322 233332
Q ss_pred hCCCeeEEEEccccC
Q psy12836 218 ENKKINVLINNAGVS 232 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~ 232 (429)
...|++|++.|..
T Consensus 226 --~~aDvVi~at~~~ 238 (404)
T 1gpj_A 226 --ARSDVVVSATAAP 238 (404)
T ss_dssp --HTCSEEEECCSSS
T ss_pred --cCCCEEEEccCCC
Confidence 2579999997653
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0031 Score=61.61 Aligned_cols=83 Identities=20% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|+|| |++|...++.....|++ |+++++++++++.+.+ + . ..+.....|-.+.+++.+.+.+.. ..
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l-~----~~~~~~~~~~~~~~~~~~~v~~~t-~g 250 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I-C----PEVVTHKVERLSAEESAKKIVESF-GG 250 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H-C----TTCEEEECCSCCHHHHHHHHHHHT-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-c----hhcccccccccchHHHHHHHHHHh-CC
Confidence 5889999998 99999999888889997 9999999988775543 3 1 123333445455555544444332 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.++|.
T Consensus 251 ~g~Dvvid~~g~ 262 (363)
T 3m6i_A 251 IEPAVALECTGV 262 (363)
T ss_dssp CCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 379999999884
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0022 Score=62.39 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc-CCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
++++.+.|+||+|++|..+|..++..|. +|++++.+.++++....++.... +..++.+ . ++. .+.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d~---~~al---- 74 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SDI---KEAL---- 74 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SCH---HHHH----
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CCH---HHHh----
Confidence 4567899999999999999999999994 79999999988877666665431 1112221 1 122 1222
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
..-|++|.+||....+. .+ -...++.|..- .+.+.+.+.
T Consensus 75 ---~dADvVvitaG~p~kpG-~~---R~dLl~~N~~I----~~~i~~~i~ 113 (343)
T 3fi9_A 75 ---TDAKYIVSSGGAPRKEG-MT---REDLLKGNAEI----AAQLGKDIK 113 (343)
T ss_dssp ---TTEEEEEECCC--------C---HHHHHHHHHHH----HHHHHHHHH
T ss_pred ---CCCCEEEEccCCCCCCC-CC---HHHHHHHHHHH----HHHHHHHHH
Confidence 35699999999753221 12 22335555544 444455544
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00015 Score=68.57 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=39.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKA 182 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~ 182 (429)
..+++||+++|+|+ ||+|++++..|++.|+ +|+++.|+.++.++.
T Consensus 112 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l 157 (277)
T 3don_A 112 YEGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW 157 (277)
T ss_dssp STTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 34678999999998 7999999999999999 899999998876543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.014 Score=56.19 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCC--ceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKN--KYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~--~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.+.+.|+|+ |.+|.++|..|+..|. +|++.+++.++++..+.++....+- ..+.....| .
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----------- 68 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----------- 68 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------
Confidence 3567899996 9999999999999997 8999999999888766666543211 122222222 1
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+.+..-|++|..||....+. .+.. ..++.|.-- ++.+.+.+.+ ..+.+.|+++|-
T Consensus 69 ~a~~~aDvVvi~ag~p~kpG-~~R~---dL~~~N~~I----v~~i~~~I~~-----------------~~p~a~vlvvtN 123 (326)
T 3pqe_A 69 EDCKDADIVCICAGANQKPG-ETRL---ELVEKNLKI----FKGIVSEVMA-----------------SGFDGIFLVATN 123 (326)
T ss_dssp GGGTTCSEEEECCSCCCCTT-CCHH---HHHHHHHHH----HHHHHHHHHH-----------------TTCCSEEEECSS
T ss_pred HHhCCCCEEEEecccCCCCC-ccHH---HHHHHHHHH----HHHHHHHHHH-----------------hcCCeEEEEcCC
Confidence 12345699999999754322 2222 234555433 4444454442 335678888776
Q ss_pred ccc
Q psy12836 297 VAH 299 (429)
Q Consensus 297 ~~~ 299 (429)
...
T Consensus 124 Pvd 126 (326)
T 3pqe_A 124 PVD 126 (326)
T ss_dssp SHH
T ss_pred hHH
Confidence 443
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0091 Score=57.57 Aligned_cols=120 Identities=11% Similarity=0.012 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.+++.+.|+|+ |++|.++|..|+..|. +|++.+++.++++....++....+- ..+.... | +.
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~--~~---------- 71 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A--EY---------- 71 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CG----------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C--cH----------
Confidence 456678999997 9999999999999987 8999999999888777666543210 1222222 1 11
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+.+..-|++|+.||....+. .+ -...++.|.-- .+.+.+.+.+ ..+.+.++++|
T Consensus 72 -~a~~~aDiVvi~ag~~~kpG-~t---R~dL~~~N~~I----~~~i~~~i~~-----------------~~p~a~ilvvt 125 (326)
T 3vku_A 72 -SDAKDADLVVITAGAPQKPG-ET---RLDLVNKNLKI----LKSIVDPIVD-----------------SGFNGIFLVAA 125 (326)
T ss_dssp -GGGTTCSEEEECCCCC--------------------C----HHHHHHHHHT-----------------TTCCSEEEECS
T ss_pred -HHhcCCCEEEECCCCCCCCC-ch---HHHHHHHHHHH----HHHHHHHHHh-----------------cCCceEEEEcc
Confidence 22346799999999753221 11 22334555433 4445555542 33567888877
Q ss_pred Ccc
Q psy12836 296 SVA 298 (429)
Q Consensus 296 S~~ 298 (429)
-..
T Consensus 126 NPv 128 (326)
T 3vku_A 126 NPV 128 (326)
T ss_dssp SSH
T ss_pred Cch
Confidence 543
|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00027 Score=48.23 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=26.8
Q ss_pred cchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 24 ALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
.|.|..+++|+.||+|..|+ .+||+.|.
T Consensus 8 ~W~e~~s~~G~~YYyN~~T~---eS~WekP~ 35 (50)
T 2dk1_A 8 RWVEGITSEGYHYYYDLISG---ASQWEKPE 35 (50)
T ss_dssp CEEECCCSTTCCCEEESSSC---CEESSCCT
T ss_pred CeEEEECCCCCEEEEECCCC---CEEeeCCh
Confidence 69999999999999999999 99999995
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=56.46 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
.....+.+.|+|| |++|.++|..|+.+|. +|++.+++.++++....++.... ....-..... |.+
T Consensus 15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~---d~~------- 83 (331)
T 4aj2_A 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK---DYS------- 83 (331)
T ss_dssp --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS---SGG-------
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC---CHH-------
Confidence 3456778999998 9999999999999997 89999999988887777775431 1111111111 221
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
....-|++|..||....+. ++. .+.++.|.-- .+.+.+.+.+ ..+.+.+++
T Consensus 84 ----~~~~aDiVvi~aG~~~kpG-~tR---~dL~~~N~~I----~~~i~~~i~~-----------------~~p~a~vlv 134 (331)
T 4aj2_A 84 ----VTANSKLVIITAGARQQEG-ESR---LNLVQRNVNI----FKFIIPNVVK-----------------YSPQCKLLI 134 (331)
T ss_dssp ----GGTTEEEEEECCSCCCCTT-CCG---GGGHHHHHHH----HHHHHHHHHH-----------------HCTTCEEEE
T ss_pred ----HhCCCCEEEEccCCCCCCC-ccH---HHHHHHHHHH----HHHHHHHHHH-----------------HCCCeEEEE
Confidence 2346799999999864332 222 2345555543 4444444442 235678888
Q ss_pred EcCccc
Q psy12836 294 VSSVAH 299 (429)
Q Consensus 294 vSS~~~ 299 (429)
+|-...
T Consensus 135 vtNPvd 140 (331)
T 4aj2_A 135 VSNPVD 140 (331)
T ss_dssp CSSSHH
T ss_pred ecChHH
Confidence 876543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.003 Score=61.70 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=52.3
Q ss_pred CC-CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCH--HHHHHHHHHHHH
Q psy12836 141 RG-KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQ--ESIRAFAEEVKK 217 (429)
Q Consensus 141 ~g-K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~--~sv~~~~~~i~~ 217 (429)
.| ++|+|+||+|++|...++.+...|++|+.++++.+++.+..+.++..+. ..+ .|..+. +++.+.+.++..
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa-~~v----i~~~~~~~~~~~~~i~~~t~ 240 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA-TQV----ITEDQNNSREFGPTIKEWIK 240 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC-SEE----EEHHHHHCGGGHHHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCC-eEE----EecCccchHHHHHHHHHHhh
Confidence 47 8999999999999999888888899999998877653222222222221 121 232210 122222222210
Q ss_pred -hCCCeeEEEEcccc
Q psy12836 218 -ENKKINVLINNAGV 231 (429)
Q Consensus 218 -~~g~iD~lI~nAG~ 231 (429)
..+.+|++|.++|.
T Consensus 241 ~~~~g~Dvvid~~G~ 255 (364)
T 1gu7_A 241 QSGGEAKLALNCVGG 255 (364)
T ss_dssp HHTCCEEEEEESSCH
T ss_pred ccCCCceEEEECCCc
Confidence 23479999999884
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0013 Score=63.29 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=50.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
+++|+||+||+|...++.+...|++|+.++++.++++.+. ++ +. .. .+|..+.+ .+.+.++ ..+++|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~l---Ga-~~----~i~~~~~~--~~~~~~~--~~~~~d 218 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL---GA-KE----VLAREDVM--AERIRPL--DKQRWA 218 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT---TC-SE----EEECC-----------C--CSCCEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc---CC-cE----EEecCCcH--HHHHHHh--cCCccc
Confidence 6999999999999999988889999999999988776543 22 11 12 13554432 2222222 124799
Q ss_pred EEEEcccc
Q psy12836 224 VLINNAGV 231 (429)
Q Consensus 224 ~lI~nAG~ 231 (429)
++|+++|.
T Consensus 219 ~vid~~g~ 226 (328)
T 1xa0_A 219 AAVDPVGG 226 (328)
T ss_dssp EEEECSTT
T ss_pred EEEECCcH
Confidence 99999984
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=64.02 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|+|| |++|..+++.+...|+ +|+.++++.++.+.+.+ + . .. ..|..+. ++.+.+.++. .
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l----a-~~----v~~~~~~-~~~~~~~~~~--~ 229 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y----A-DR----LVNPLEE-DLLEVVRRVT--G 229 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T----C-SE----EECTTTS-CHHHHHHHHH--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h----H-Hh----ccCcCcc-CHHHHHHHhc--C
Confidence 7899999999 9999999998888999 99999999877653321 1 1 11 2355542 3333333332 3
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+++|++|.++|.
T Consensus 230 ~g~D~vid~~g~ 241 (343)
T 2dq4_A 230 SGVEVLLEFSGN 241 (343)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999984
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0082 Score=57.60 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=69.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+.|+||+|.+|..++..|+..| .+|++++++. .+....++.......++.... ...+.++++ ..
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~-------~~ 68 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCL-------KG 68 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHH-------TT
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHh-------CC
Confidence 58899999999999999999988 6899999987 333334443322211222211 011222222 35
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
.|++|+.||...... .+.. ..+..|... ++.+.+.+.+ ..+.+.||++|-...
T Consensus 69 aDvVvi~ag~~~~~g-~~r~---dl~~~n~~i----~~~i~~~i~~-----------------~~p~a~viv~sNPv~ 121 (314)
T 1mld_A 69 CDVVVIPAGVPRKPG-MTRD---DLFNTNATI----VATLTAACAQ-----------------HCPDAMICIISNPVN 121 (314)
T ss_dssp CSEEEECCSCCCCTT-CCGG---GGHHHHHHH----HHHHHHHHHH-----------------HCTTSEEEECSSCHH
T ss_pred CCEEEECCCcCCCCC-CcHH---HHHHHHHHH----HHHHHHHHHh-----------------hCCCeEEEEECCCcc
Confidence 699999999864322 1221 234555554 3444444432 235678888765443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0025 Score=61.71 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|+ |++|...++.+...|++|+.++++.++.+.+. ++ +. .. ..|..+.+..+.+.+ ..+
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---Ga-~~----~i~~~~~~~~~~~~~----~~g 231 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RL---GA-EV----AVNARDTDPAAWLQK----EIG 231 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---TC-SE----EEETTTSCHHHHHHH----HHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-Hc---CC-CE----EEeCCCcCHHHHHHH----hCC
Confidence 5889999997 89999999988889999999999998876542 22 11 11 235555333333322 235
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|.++|.
T Consensus 232 ~~d~vid~~g~ 242 (340)
T 3s2e_A 232 GAHGVLVTAVS 242 (340)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEEeCCC
Confidence 89999999873
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0042 Score=60.06 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.+++++. .|.+.+++.++...+..++..+
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~ 109 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 109 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence 567899999998 8999999999999997 788888753 5777778888877777777776
Q ss_pred EeeC
Q psy12836 199 KCDL 202 (429)
Q Consensus 199 ~~Dl 202 (429)
..++
T Consensus 110 ~~~i 113 (340)
T 3rui_A 110 KLSI 113 (340)
T ss_dssp CCCC
T ss_pred eccc
Confidence 6554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.007 Score=59.58 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC--CHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA--SQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls--~~~sv~~~~~~i~~ 217 (429)
.|++|+|+| +|++|...++.+...| ++|+.+++++++++.+. ++ +. .. ..|.. +.+++.+.+.++..
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga-~~----vi~~~~~~~~~~~~~v~~~~~ 264 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---GA-DL----TLNRRETSVEERRKAIMDITH 264 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---TC-SE----EEETTTSCHHHHHHHHHHHTT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc---CC-cE----EEeccccCcchHHHHHHHHhC
Confidence 588999999 8999999999888899 59999999988876543 22 11 11 13544 13444333333211
Q ss_pred hCCCeeEEEEcccc
Q psy12836 218 ENKKINVLINNAGV 231 (429)
Q Consensus 218 ~~g~iD~lI~nAG~ 231 (429)
...+|++|.++|.
T Consensus 265 -g~g~Dvvid~~g~ 277 (380)
T 1vj0_A 265 -GRGADFILEATGD 277 (380)
T ss_dssp -TSCEEEEEECSSC
T ss_pred -CCCCcEEEECCCC
Confidence 1269999999985
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0094 Score=57.90 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHH-h
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKK-E 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~-~ 218 (429)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.+. ++ +. .. ..|.++ .+..+++.+.... .
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---Ga-~~----~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC---GA-DV----TLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---TC-SE----EEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-Hh---CC-CE----EEcCcccccHHHHHHHHhcccc
Confidence 5889999997 89999999988889999999999988776543 22 11 11 235443 2222222221110 1
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|+++|.
T Consensus 238 g~g~D~vid~~g~ 250 (352)
T 1e3j_A 238 GDLPNVTIDCSGN 250 (352)
T ss_dssp SSCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 2479999999984
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0062 Score=59.43 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|+|| |++|...++.+... |++|+.+++++++++.+. ++ +... ..|..+. +.+.+.++.. .
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l----Ga~~----vi~~~~~--~~~~v~~~~~-g 252 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL----GADH----VVDARRD--PVKQVMELTR-G 252 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT----TCSE----EEETTSC--HHHHHHHHTT-T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh----CCCE----EEeccch--HHHHHHHHhC-C
Confidence 5889999999 89999999888788 999999999988876543 32 1112 2365553 3333333321 1
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.++|.
T Consensus 253 ~g~Dvvid~~G~ 264 (359)
T 1h2b_A 253 RGVNVAMDFVGS 264 (359)
T ss_dssp CCEEEEEESSCC
T ss_pred CCCcEEEECCCC
Confidence 279999999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0063 Score=59.66 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.+.+ +. . .. .+|..+.+.++ ++. +
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lG---a-~~----vi~~~~~~~~~----~~~---~ 256 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LG---A-DE----VVNSRNADEMA----AHL---K 256 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HT---C-SE----EEETTCHHHHH----TTT---T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---C-cE----EeccccHHHHH----Hhh---c
Confidence 5889999998 899999998888899999999999988775543 31 1 11 24666654332 221 5
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|++|.++|.
T Consensus 257 g~Dvvid~~g~ 267 (369)
T 1uuf_A 257 SFDFILNTVAA 267 (369)
T ss_dssp CEEEEEECCSS
T ss_pred CCCEEEECCCC
Confidence 79999999986
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0062 Score=59.38 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+|+ |++|...++.+...|++|++++++.++.+.+.+++ +...+ .|..+.+.++ +..+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l----Ga~~v----i~~~~~~~~~-------~~~~ 243 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL----GADDY----VIGSDQAKMS-------ELAD 243 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS----CCSCE----EETTCHHHHH-------HSTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc----CCcee----eccccHHHHH-------HhcC
Confidence 6899999996 99999999888888999999999988776544232 11122 3555543322 2235
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
.+|++|.++|..
T Consensus 244 g~D~vid~~g~~ 255 (357)
T 2cf5_A 244 SLDYVIDTVPVH 255 (357)
T ss_dssp TEEEEEECCCSC
T ss_pred CCCEEEECCCCh
Confidence 799999999853
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=60.72 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=41.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARK 184 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~ 184 (429)
..+++||+++|.|+ ||.|++++..|++.|+ +|.++.|+.+++++.++
T Consensus 117 ~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 117 RVEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp TCCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred CCCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 45688999999998 6999999999999998 89999999988766544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0057 Score=59.82 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh-
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAK-RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE- 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~- 218 (429)
.|++++|+||+|++|...++.+.. .|++|+.++++.++.+.+. ++ +. ..+ .|..+ ++ .+++.+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~l---Ga-d~v----i~~~~--~~---~~~v~~~~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SL---GA-HHV----IDHSK--PL---AAEVAALG 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HT---TC-SEE----ECTTS--CH---HHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-Hc---CC-CEE----EeCCC--CH---HHHHHHhc
Confidence 689999999999999988766655 5899999999988776543 22 11 121 24433 22 2333332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.++|.
T Consensus 237 ~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 237 LGAPAFVFSTTHT 249 (363)
T ss_dssp SCCEEEEEECSCH
T ss_pred CCCceEEEECCCc
Confidence 3479999999884
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0031 Score=61.61 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+|| |++|...++.+...|++|+.++++.++++.+.+ +. . ..+ .|..+.. .+.+++. +
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lG---a-~~v----~~~~~~~---~~~~~~~---~ 242 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MG---A-DHY----IATLEEG---DWGEKYF---D 242 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HT---C-SEE----EEGGGTS---CHHHHSC---S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cC---C-CEE----EcCcCch---HHHHHhh---c
Confidence 5899999999 999999999888899999999999888765433 31 1 111 3444320 1122222 5
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|++|.++|.
T Consensus 243 ~~D~vid~~g~ 253 (360)
T 1piw_A 243 TFDLIVVCASS 253 (360)
T ss_dssp CEEEEEECCSC
T ss_pred CCCEEEECCCC
Confidence 89999999986
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0032 Score=61.82 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++ .. .. .+|.++ .+++.+.+.++..
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga-~~----vi~~~~~~~~~~~~~~~~~~- 260 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---GA-TD----FVNPNDHSEPISQVLSKMTN- 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TC-CE----EECGGGCSSCHHHHHHHHHT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---CC-ce----EEeccccchhHHHHHHHHhC-
Confidence 5889999996 9999999998888999 8999999998877543 32 11 11 134443 1233344444322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|+++|.
T Consensus 261 -~g~D~vid~~g~ 272 (374)
T 1cdo_A 261 -GGVDFSLECVGN 272 (374)
T ss_dssp -SCBSEEEECSCC
T ss_pred -CCCCEEEECCCC
Confidence 479999999985
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0076 Score=59.11 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
-.|++|+|+||+|++|...++.+...|++|+.++ +.++++. .+++ +. .. ..|..+.+ +.+.+.++. .
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~-~~~l---Ga-~~----vi~~~~~~-~~~~v~~~t--~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDL-AKSR---GA-EE----VFDYRAPN-LAQTIRTYT--K 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH-HHHT---TC-SE----EEETTSTT-HHHHHHHHT--T
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHH-HHHc---CC-cE----EEECCCch-HHHHHHHHc--c
Confidence 4689999999999999999999889999999887 6666553 3333 11 11 23555543 222222221 2
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+++|+++.++|.
T Consensus 230 g~~d~v~d~~g~ 241 (371)
T 3gqv_A 230 NNLRYALDCITN 241 (371)
T ss_dssp TCCCEEEESSCS
T ss_pred CCccEEEECCCc
Confidence 469999999985
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.014 Score=56.73 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC--CHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA--SQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls--~~~sv~~~~~~i~~ 217 (429)
.|++|+|+|+ |++|...++.+...|+ +|++++++.++++.+. ++ +. .. ..|.. +.++..+.+.+...
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga-~~----vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---GA-DL----VLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---TC-SE----EEECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---CC-CE----EEcCcccccchHHHHHHHHhC
Confidence 5889999996 8999999988888999 8999999988776543 32 11 11 23554 23333322222221
Q ss_pred hCCCeeEEEEcccc
Q psy12836 218 ENKKINVLINNAGV 231 (429)
Q Consensus 218 ~~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 241 --~g~D~vid~~g~ 252 (356)
T 1pl8_A 241 --CKPEVTIECTGA 252 (356)
T ss_dssp --SCCSEEEECSCC
T ss_pred --CCCCEEEECCCC
Confidence 579999999884
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.031 Score=53.54 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC--hhHHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD--LDKCEKARKEVVLES----KNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~--~~~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~ 210 (429)
+.++.+.+.|+|+ |.+|.++|..|+..|. +|++.+++ .++++....++.... ...++..- . +.
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~---d~----- 73 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-S---DY----- 73 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-S---CG-----
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-C---CH-----
Confidence 3456778999997 9999999999999999 99999999 555554444443221 11222211 1 11
Q ss_pred HHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 211 FAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
+.+..-|++|.+||....+. .+.. +.++.|.-- .+.+.+.+.+ ..+.+.
T Consensus 74 ------~a~~~aDvVIiaag~p~kpg-~~R~---dl~~~N~~i----~~~i~~~i~~-----------------~~p~a~ 122 (315)
T 3tl2_A 74 ------ADTADSDVVVITAGIARKPG-MSRD---DLVATNSKI----MKSITRDIAK-----------------HSPNAI 122 (315)
T ss_dssp ------GGGTTCSEEEECCSCCCCTT-CCHH---HHHHHHHHH----HHHHHHHHHH-----------------HCTTCE
T ss_pred ------HHhCCCCEEEEeCCCCCCCC-CCHH---HHHHHHHHH----HHHHHHHHHH-----------------hCCCeE
Confidence 12346799999999864332 2322 234445433 4444444442 235678
Q ss_pred EEEEcCcc
Q psy12836 291 IINVSSVA 298 (429)
Q Consensus 291 IV~vSS~~ 298 (429)
++++|-..
T Consensus 123 vlvvsNPv 130 (315)
T 3tl2_A 123 IVVLTNPV 130 (315)
T ss_dssp EEECCSSH
T ss_pred EEECCChH
Confidence 88877543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.022 Score=53.51 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=37.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
+++.|.|+ |.+|.++|+.|++.|++|++.+|+.++++...+.+
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 47 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRF 47 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 56777776 78999999999999999999999999888776654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.004 Score=60.71 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCCcHHHHH-HHHH-HHcCCE-EEEEEcChh---HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAI-AREL-AKRKAK-VIMACRDLD---KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~ai-A~~L-a~~G~~-Vil~~R~~~---~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
++++++|+|+|| |++|... ++.+ ...|++ |+.++++.+ +.+.+. ++ + ...+ |..+. ++.+ +
T Consensus 170 ~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~l----G---a~~v--~~~~~-~~~~-i 236 (357)
T 2b5w_A 170 DWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-EL----D---ATYV--DSRQT-PVED-V 236 (357)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HT----T---CEEE--ETTTS-CGGG-H
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-Hc----C---Cccc--CCCcc-CHHH-H
Confidence 455599999999 9999998 7666 567997 999999887 766542 32 1 1222 55442 2333 3
Q ss_pred HHHHHhCCCeeEEEEcccc
Q psy12836 213 EEVKKENKKINVLINNAGV 231 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~ 231 (429)
.++ .+.+|++|.++|.
T Consensus 237 ~~~---~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 237 PDV---YEQMDFIYEATGF 252 (357)
T ss_dssp HHH---SCCEEEEEECSCC
T ss_pred HHh---CCCCCEEEECCCC
Confidence 443 2489999999884
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0082 Score=62.22 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+++.++...+..++..+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~ 401 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 401 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence 578999999998 7999999999999997 799988764 5777788888888887777777
Q ss_pred EeeC
Q psy12836 199 KCDL 202 (429)
Q Consensus 199 ~~Dl 202 (429)
..++
T Consensus 402 ~~~I 405 (615)
T 4gsl_A 402 KLSI 405 (615)
T ss_dssp CCCC
T ss_pred eccc
Confidence 6555
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0081 Score=59.69 Aligned_cols=43 Identities=21% Similarity=0.026 Sum_probs=38.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.+.|++|+|+|+ |.+|+.+++.+...|++|++++++.++++.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 467999999997 8999999999999999999999999887664
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0051 Score=60.31 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++ +. .. .+|..+ .+++.+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga-~~----vi~~~~~~~~~~~~~~~~~~- 259 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EV---GA-TE----CVNPQDYKKPIQEVLTEMSN- 259 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---TC-SE----EECGGGCSSCHHHHHHHHTT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---CC-ce----EecccccchhHHHHHHHHhC-
Confidence 5889999995 9999999998888999 8999999998876543 32 11 11 134443 1223333333322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 260 -~g~D~vid~~g~ 271 (374)
T 2jhf_A 260 -GGVDFSFEVIGR 271 (374)
T ss_dssp -SCBSEEEECSCC
T ss_pred -CCCcEEEECCCC
Confidence 479999999985
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.022 Score=55.10 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKR--KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|| |++|...++.+... |++|+.+++++++.+.+. ++ +. ..+ .|..+. ...++++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~l---Ga-~~v----i~~~~~---~~~~~~~~~- 235 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-EL---GA-DYV----SEMKDA---ESLINKLTD- 235 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HH---TC-SEE----ECHHHH---HHHHHHHHT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-Hh---CC-CEE----eccccc---hHHHHHhhc-
Confidence 6899999999 89999999888888 999999999988876543 23 11 111 233220 123333332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
..++|++|.++|.
T Consensus 236 g~g~D~vid~~g~ 248 (344)
T 2h6e_A 236 GLGASIAIDLVGT 248 (344)
T ss_dssp TCCEEEEEESSCC
T ss_pred CCCccEEEECCCC
Confidence 2379999999984
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0059 Score=59.89 Aligned_cols=80 Identities=25% Similarity=0.249 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH-Hh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK-KE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~-~~ 218 (429)
.|++|+|+|| |++|...++.+...|+ +|+++++++++.+.+ +++. . .. ..|.++.+..+. +.+.. ..
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lG---a-~~----vi~~~~~~~~~~-i~~~~~~~ 250 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEVG---A-TA----TVDPSAGDVVEA-IAGPVGLV 250 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---C-SE----EECTTSSCHHHH-HHSTTSSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---C-CE----EECCCCcCHHHH-HHhhhhcc
Confidence 5889999998 8999999988888999 899999988876643 3331 1 11 235544332222 22110 12
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+++|++|.++|.
T Consensus 251 ~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 251 PGGVDVVIECAGV 263 (370)
T ss_dssp TTCEEEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 3489999999874
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0078 Score=59.20 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=55.4
Q ss_pred CCCEEEEEc-CCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTG-ANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITG-assGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++++|.| |+|++|...++.+...|++|+.+++++++++.+.+ + .. ..+ .|..+.+-.+++.+....
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga-~~~----~~~~~~~~~~~v~~~t~~-- 238 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-Q---GA-VHV----CNAASPTFMQDLTEALVS-- 238 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-T---TC-SCE----EETTSTTHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-C---CC-cEE----EeCCChHHHHHHHHHhcC--
Confidence 578899997 89999999998888899999999999888765432 2 11 112 355543323332222211
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
..+|++|.++|..
T Consensus 239 ~g~d~v~d~~g~~ 251 (379)
T 3iup_A 239 TGATIAFDATGGG 251 (379)
T ss_dssp HCCCEEEESCEEE
T ss_pred CCceEEEECCCch
Confidence 2699999999863
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0046 Score=60.57 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++. . ..+ .|.++ .+++.+.+.++.
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~lG---a-~~v----i~~~~~~~~~~~~v~~~~-- 257 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFG---A-TEC----INPQDFSKPIQEVLIEMT-- 257 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHT---C-SEE----ECGGGCSSCHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcC---C-ceE----eccccccccHHHHHHHHh--
Confidence 5889999996 9999999988888899 7999999998876543 331 1 111 34432 122333333332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.++|.
T Consensus 258 ~~g~D~vid~~g~ 270 (373)
T 2fzw_A 258 DGGVDYSFECIGN 270 (373)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCCEEEECCCc
Confidence 2479999999985
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=56.10 Aligned_cols=103 Identities=14% Similarity=-0.017 Sum_probs=62.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--E-----EEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--K-----VIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~-----Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
..|.||||+|.||..++..|+..|. + |++++++. ++++....++...... ....+ ..++ ..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~-~~~~~--~~~~--~~----- 73 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-LLKDV--IATD--KE----- 73 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-TEEEE--EEES--CH-----
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhc-ccCCE--EEcC--Cc-----
Confidence 4699999999999999999998875 4 99999874 4566555666542211 11111 1111 11
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHH
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 261 (429)
.+.+..-|++|+.||....+. .+ -...++.|......+...+
T Consensus 74 --~~~~~daDvVvitAg~prkpG-~t---R~dll~~N~~i~~~i~~~i 115 (333)
T 5mdh_A 74 --EIAFKDLDVAILVGSMPRRDG-ME---RKDLLKANVKIFKCQGAAL 115 (333)
T ss_dssp --HHHTTTCSEEEECCSCCCCTT-CC---TTTTHHHHHHHHHHHHHHH
T ss_pred --HHHhCCCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHH
Confidence 122346799999999764321 12 2345666776644444433
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0056 Score=58.68 Aligned_cols=74 Identities=12% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+||+|++|...++.+...|++|+.++++ ++. +..+++ +. .. ..|..+.+.+. +...
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~-~~~~~l---Ga-~~----~i~~~~~~~~~-------~~~~ 214 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNH-AFLKAL---GA-EQ----CINYHEEDFLL-------AIST 214 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHH-HHHHHH---TC-SE----EEETTTSCHHH-------HCCS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chH-HHHHHc---CC-CE----EEeCCCcchhh-------hhcc
Confidence 58999999999999999999999999999988854 333 333333 11 11 23555433221 2225
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.++|.
T Consensus 215 g~D~v~d~~g~ 225 (321)
T 3tqh_A 215 PVDAVIDLVGG 225 (321)
T ss_dssp CEEEEEESSCH
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.034 Score=53.49 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLES----KNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
++.+.+.|+|| |.+|.++|..|+..|. +|++.++++++++....++.... ...++.. ..| .+
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~~-------- 71 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---YA-------- 71 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---GG--------
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---HH--------
Confidence 45678999998 9999999999999998 99999999988765555554321 1223321 112 11
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+..-|++|..||....+. .+. ...+..|. ...+.+.+.+.+ ..+.+.++++
T Consensus 72 ---a~~~aDiVIiaag~p~k~G-~~R---~dl~~~N~----~i~~~i~~~i~~-----------------~~p~a~iivv 123 (324)
T 3gvi_A 72 ---AIEGADVVIVTAGVPRKPG-MSR---DDLLGINL----KVMEQVGAGIKK-----------------YAPEAFVICI 123 (324)
T ss_dssp ---GGTTCSEEEECCSCCCC---------CHHHHHHH----HHHHHHHHHHHH-----------------HCTTCEEEEC
T ss_pred ---HHCCCCEEEEccCcCCCCC-CCH---HHHHHhhH----HHHHHHHHHHHH-----------------HCCCeEEEec
Confidence 2235699999999754322 121 12334444 344555555543 2356788887
Q ss_pred cCccc
Q psy12836 295 SSVAH 299 (429)
Q Consensus 295 SS~~~ 299 (429)
|-...
T Consensus 124 tNPvd 128 (324)
T 3gvi_A 124 TNPLD 128 (324)
T ss_dssp CSSHH
T ss_pred CCCcH
Confidence 76443
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0073 Score=62.51 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC-------------------hhHHHHHHHHHhhhcCCceEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRD-------------------LDKCEKARKEVVLESKNKYVLC 197 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~ 197 (429)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+ ..|.+.+++.++...+..++..
T Consensus 323 ~kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~ 401 (598)
T 3vh1_A 323 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG 401 (598)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence 4678899999998 7999999999999997 78888654 2578888888888777777777
Q ss_pred EEeeC
Q psy12836 198 RKCDL 202 (429)
Q Consensus 198 ~~~Dl 202 (429)
+..++
T Consensus 402 ~~~~I 406 (598)
T 3vh1_A 402 VKLSI 406 (598)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 76654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.01 Score=57.84 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .|.+.+++.+....+..++..+
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 193 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI 193 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence 567889999998 8999999999999997 799998763 3667777778777777788888
Q ss_pred EeeCCCHHHHHHHHHHHHHhCCCeeEEEEcc
Q psy12836 199 KCDLASQESIRAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 199 ~~Dls~~~sv~~~~~~i~~~~g~iD~lI~nA 229 (429)
..++++..++ .+ +.+.|+||.+.
T Consensus 194 ~~~i~~~~~~-------~~-~~~~DlVvd~~ 216 (353)
T 3h5n_A 194 ALNINDYTDL-------HK-VPEADIWVVSA 216 (353)
T ss_dssp ECCCCSGGGG-------GG-SCCCSEEEECC
T ss_pred ecccCchhhh-------hH-hccCCEEEEec
Confidence 8888765422 22 45789988865
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0073 Score=59.26 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++. . .. ..|.++ .+++.+.+.++..
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a-~~----vi~~~~~~~~~~~~v~~~~~- 263 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALG---A-TD----CLNPRELDKPVQDVITELTA- 263 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTT---C-SE----EECGGGCSSCHHHHHHHHHT-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhC---C-cE----EEccccccchHHHHHHHHhC-
Confidence 5889999996 9999999988888999 8999999998876543 321 1 11 134442 1223333333322
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 264 -~g~Dvvid~~G~ 275 (376)
T 1e3i_A 264 -GGVDYSLDCAGT 275 (376)
T ss_dssp -SCBSEEEESSCC
T ss_pred -CCccEEEECCCC
Confidence 479999999985
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=58.38 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+.++|.|+ |.+|+.+|+.|.++|+ |++++++++..+... . .+.++.+|.++.+.++++ ...+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-------~--~~~~i~gd~~~~~~l~~a------~i~~ 71 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR-------S--GANFVHGDPTRVSDLEKA------NVRG 71 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-------T--TCEEEESCTTCHHHHHHT------TCTT
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-------c--CCeEEEcCCCCHHHHHhc------Ccch
Confidence 357888898 8999999999999999 999999988765442 1 256778999998766543 1235
Q ss_pred eeEEEEccc
Q psy12836 222 INVLINNAG 230 (429)
Q Consensus 222 iD~lI~nAG 230 (429)
.|.+|.+.+
T Consensus 72 ad~vi~~~~ 80 (234)
T 2aef_A 72 ARAVIVDLE 80 (234)
T ss_dssp CSEEEECCS
T ss_pred hcEEEEcCC
Confidence 688887653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0052 Score=59.61 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+|+ |++|...++.+...|++|+++++++++.+.+. ++ +...+. ++.+.+++
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l----Ga~~v~------~~~~~~~~---------- 233 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SM----GVKHFY------TDPKQCKE---------- 233 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HT----TCSEEE------SSGGGCCS----------
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hc----CCCeec------CCHHHHhc----------
Confidence 5889999997 99999999888889999999999998877543 22 112222 33332211
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
.+|++|.++|..
T Consensus 234 ~~D~vid~~g~~ 245 (348)
T 3two_A 234 ELDFIISTIPTH 245 (348)
T ss_dssp CEEEEEECCCSC
T ss_pred CCCEEEECCCcH
Confidence 799999998854
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0061 Score=57.10 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
+|+++|.|+ ||.|++++..|++.|.+|.++.|+.++.++.. ++
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~ 160 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL 160 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence 899999997 89999999999999999999999999988776 54
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=57.99 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|.|+ |++|...++.+...|+ +|++++++.++++.+. ++ +.. .+|.++.+.+.+.+.++. ..
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~----~i~~~~~~~~~~~v~~~t-~g 252 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ-----GFE----IADLSLDTPLHEQIAALL-GE 252 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCE----EEETTSSSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-Hc-----CCc----EEccCCcchHHHHHHHHh-CC
Confidence 5889999995 9999999888778899 6999999988876542 32 122 245554332222222221 12
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
..+|++|.++|..
T Consensus 253 ~g~Dvvid~~G~~ 265 (398)
T 1kol_A 253 PEVDCAVDAVGFE 265 (398)
T ss_dssp SCEEEEEECCCTT
T ss_pred CCCCEEEECCCCc
Confidence 3699999999864
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.074 Score=51.17 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc--C-CceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES--K-NKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~-~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+.+.|+|+ |.+|..+|..|+..|. +|++.+.+.++++....++.... . ..++. ...|..+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~d~~~----------- 86 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGKDYSV----------- 86 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EESSSCS-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcCCHHH-----------
Confidence 4578899999 9999999999999997 89999999988877666665431 1 12222 1223321
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+..-|++|..||....+. .+.. +.+..|.- +.+.+.+.+.+ ..+.+.++++|
T Consensus 87 ---~~daDiVIitaG~p~kpG-~tR~---dll~~N~~----I~k~i~~~I~k-----------------~~P~a~ilvvt 138 (330)
T 3ldh_A 87 ---SAGSKLVVITAGARQQEG-ESRL---NLVQRNVN----IFKFIIPNIVK-----------------HSPDCLKELHP 138 (330)
T ss_dssp ---CSSCSEEEECCSCCCCSS-CCTT---GGGHHHHH----HHHHHHHHHHH-----------------HCTTCEEEECS
T ss_pred ---hCCCCEEEEeCCCCCCCC-CCHH---HHHHhhHH----HHHHHHHHHHh-----------------hCCCceEEeCC
Confidence 346799999999865332 2221 23344443 34445555443 23567888877
Q ss_pred Ccc
Q psy12836 296 SVA 298 (429)
Q Consensus 296 S~~ 298 (429)
-..
T Consensus 139 NPv 141 (330)
T 3ldh_A 139 ELG 141 (330)
T ss_dssp SSH
T ss_pred Ccc
Confidence 643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0046 Score=60.80 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.+ +++ +. .. ..|..+ .+++.+.+.++.
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga-~~----vi~~~~~~~~~~~~i~~~~-- 260 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF---GV-NE----FVNPKDHDKPIQEVIVDLT-- 260 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT---TC-CE----EECGGGCSSCHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CC-cE----EEccccCchhHHHHHHHhc--
Confidence 5889999998 9999999988888999 799999999887643 222 11 11 234432 223333333332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.++|.
T Consensus 261 ~gg~D~vid~~g~ 273 (378)
T 3uko_A 261 DGGVDYSFECIGN 273 (378)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 2489999999885
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=52.96 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=37.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
+++|+||+|.+|.++++.|+++|++|++.+|+.++.+...++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 578999999999999999999999999999998887765544
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0088 Score=58.57 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|++|+|+|+ |+||...++.+...|+ +|+.+++++++++.+. ++ +. ..+ .|..+ .+++.+.+.++.
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga-~~v----i~~~~~~~~~~~~i~~~t-- 258 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---GA-TEC----LNPKDYDKPIYEVICEKT-- 258 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---TC-SEE----ECGGGCSSCHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---CC-cEE----EecccccchHHHHHHHHh--
Confidence 5889999996 8999999988888899 8999999988876543 32 11 111 24432 122333333332
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.++|.
T Consensus 259 ~gg~Dvvid~~g~ 271 (373)
T 1p0f_A 259 NGGVDYAVECAGR 271 (373)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 2479999999885
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=56.38 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
+++||+++|.|+ |.+|..+|+.|.+.|++|++.+++.+++++..+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence 799999999997 78999999999999999999999988877766653
|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0024 Score=56.05 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=29.9
Q ss_pred cccccccchhhcc-CCceEEEEeceeeeeeceecccce
Q psy12836 18 EDTLRSALWELSS-GAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 18 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+..||+|||.|.. ..|+.||+|..++ ..+|+.|.
T Consensus 5 ~~~lp~~w~~~~s~s~~~~Yy~~~~~~---~~~~~~~~ 39 (177)
T 1yw5_A 5 STGLPPNWTIRVSRSHNKEYFLNQSTN---ESSWDPPY 39 (177)
T ss_dssp CCCCCTTEEEEECSSTTCEEEEETTTC---CEESSCCT
T ss_pred cCCCCchHHHHhcccCCchhhhhHHHh---hHhhcCcc
Confidence 4669999998876 4699999999999 99999885
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.018 Score=57.13 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|+|| |++|...++.+...|+ +|+.+++++++++.+ +++. . .. ..|..+.+..+. +.++. ..
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lG---a-~~----vi~~~~~~~~~~-i~~~t-~g 280 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELG---A-DH----VIDPTKENFVEA-VLDYT-NG 280 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---C-SE----EECTTTSCHHHH-HHHHT-TT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---C-CE----EEcCCCCCHHHH-HHHHh-CC
Confidence 5889999998 8999999988888999 899999998887654 3331 1 11 135444332222 22221 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.++|.
T Consensus 281 ~g~D~vid~~g~ 292 (404)
T 3ip1_A 281 LGAKLFLEATGV 292 (404)
T ss_dssp CCCSEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 269999999885
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.12 Score=49.98 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcChh--HHHHHHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDLD--KCEKARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
..+++.-.|.|+||+|+||..++..|++... +++|.+.++. +++...-++.............. ++..
T Consensus 19 ~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~--~~~~- 95 (345)
T 4h7p_A 19 PGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT--ADPR- 95 (345)
T ss_dssp ---CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE--SCHH-
T ss_pred CCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc--CChH-
Confidence 3455667899999999999999999997643 7899987653 34444445544222112211111 1221
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
+.+..-|++|..||....+. ++.++ .++.|.- +++.+.+.+.
T Consensus 96 ---------~a~~~advVvi~aG~prkpG-mtR~D---Ll~~Na~----I~~~~~~~i~ 137 (345)
T 4h7p_A 96 ---------VAFDGVAIAIMCGAFPRKAG-MERKD---LLEMNAR----IFKEQGEAIA 137 (345)
T ss_dssp ---------HHTTTCSEEEECCCCCCCTT-CCHHH---HHHHHHH----HHHHHHHHHH
T ss_pred ---------HHhCCCCEEEECCCCCCCCC-CCHHH---HHHHhHH----HHHHHHHHHH
Confidence 12346799999999865432 34444 3555554 3455555554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.1 Score=50.05 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLES----KNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.+.+.|+|+ |.+|.++|..|+..|. +|++.++++++++....++.... ...++.. . .+.
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t---~d~---------- 68 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-T---NDY---------- 68 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-E---SCG----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-c---CCH----------
Confidence 4567888895 9999999999999988 99999999988776665664321 1222221 1 121
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+.+..-|++|+.||....+. .+..+ .+..|.- ..+.+.+.+.+ ..+.+.++++|
T Consensus 69 -~a~~~aDvVIi~ag~p~k~G-~~R~d---l~~~N~~----i~~~i~~~i~~-----------------~~p~a~vivvt 122 (321)
T 3p7m_A 69 -KDLENSDVVIVTAGVPRKPG-MSRDD---LLGINIK----VMQTVGEGIKH-----------------NCPNAFVICIT 122 (321)
T ss_dssp -GGGTTCSEEEECCSCCCCTT-CCHHH---HHHHHHH----HHHHHHHHHHH-----------------HCTTCEEEECC
T ss_pred -HHHCCCCEEEEcCCcCCCCC-CCHHH---HHHHhHH----HHHHHHHHHHH-----------------HCCCcEEEEec
Confidence 12235699999999764332 23322 3444443 34455555543 23567888876
Q ss_pred Ccc
Q psy12836 296 SVA 298 (429)
Q Consensus 296 S~~ 298 (429)
-..
T Consensus 123 NPv 125 (321)
T 3p7m_A 123 NPL 125 (321)
T ss_dssp SSH
T ss_pred Cch
Confidence 543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0056 Score=59.67 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
.|++|+|+||+|++|...++.+...|++|+.++++.+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP 203 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 5899999999999999998887788999888876543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.014 Score=57.79 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|.|+ |++|...++.+...|+ +|+.++++.++++.+. ++ +. . .+|..+.+.+.+.+.++. ..
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga--~--~i~~~~~~~~~~~~~~~~-~g 252 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-DA-----GF--E--TIDLRNSAPLRDQIDQIL-GK 252 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-TT-----TC--E--EEETTSSSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc-----CC--c--EEcCCCcchHHHHHHHHh-CC
Confidence 5889999997 9999999888878899 8999999988876442 22 12 2 245554322122222221 11
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
..+|++|.++|..
T Consensus 253 ~g~Dvvid~~g~~ 265 (398)
T 2dph_A 253 PEVDCGVDAVGFE 265 (398)
T ss_dssp SCEEEEEECSCTT
T ss_pred CCCCEEEECCCCc
Confidence 2699999999853
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.046 Score=53.61 Aligned_cols=45 Identities=16% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
.+.+++|+|.|+ |.+|..+++.+...|++|++.+|+.++++.+.+
T Consensus 181 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 181 TVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp EECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457899999999 799999999999999999999999988776543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.091 Score=49.73 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=70.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES----KNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+.|+|| |.+|.++|..|+..|. +|++.++++++++....++.... ...++.. . +|.+
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~-t---~d~~----------- 65 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-G---ADYS----------- 65 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-E---SCGG-----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE-e---CCHH-----------
Confidence 4788999 9999999999999998 89999999988764333333221 1122221 1 1211
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.+..-|++|..||....+. .+..+ .++.|. .+++.+.+.+.+ ..+.+.|+++|-.
T Consensus 66 a~~~aDiVViaag~~~kpG-~~R~d---l~~~N~----~i~~~i~~~i~~-----------------~~p~a~iivvsNP 120 (294)
T 1oju_A 66 LLKGSEIIVVTAGLARKPG-MTRLD---LAHKNA----GIIKDIAKKIVE-----------------NAPESKILVVTNP 120 (294)
T ss_dssp GGTTCSEEEECCCCCCCSS-CCHHH---HHHHHH----HHHHHHHHHHHT-----------------TSTTCEEEECSSS
T ss_pred HhCCCCEEEECCCCCCCCC-CcHHH---HHHHHH----HHHHHHHHHHHh-----------------hCCCeEEEEeCCc
Confidence 1235699999999864322 23332 244443 345555555553 3356788887754
Q ss_pred c
Q psy12836 298 A 298 (429)
Q Consensus 298 ~ 298 (429)
.
T Consensus 121 v 121 (294)
T 1oju_A 121 M 121 (294)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.024 Score=55.34 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++. . .. ..|..+.+-. +.+.+. ..
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a-~~----vi~~~~~~~~-~~~~~~--~~ 256 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLG---A-TH----VINSKTQDPV-AAIKEI--TD 256 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHT---C-SE----EEETTTSCHH-HHHHHH--TT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcC---C-CE----EecCCccCHH-HHHHHh--cC
Confidence 5889999995 8999999988888899 6999999988876543 331 1 11 1354442222 222222 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 257 gg~D~vid~~g~ 268 (371)
T 1f8f_A 257 GGVNFALESTGS 268 (371)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCcEEEECCCC
Confidence 379999999984
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.017 Score=56.93 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.+.|++|+|+|+ |++|+.+++.+...|++|++++|+.++++.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 578999999996 8999999999999999999999998877654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.016 Score=55.17 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|+|| |++|...++.+...|++|+.++ +.++.+.+. ++. .. .++ | | . +++ .+
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~-~lG-----a~-~v~--~--d---~----~~v---~~ 198 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA-KRG-----VR-HLY--R--E---P----SQV---TQ 198 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH-HHT-----EE-EEE--S--S---G----GGC---CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH-HcC-----CC-EEE--c--C---H----HHh---CC
Confidence 5899999999 9999999988888999999999 777766543 331 11 122 2 2 1 122 45
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
++|+++.++|.
T Consensus 199 g~Dvv~d~~g~ 209 (315)
T 3goh_A 199 KYFAIFDAVNS 209 (315)
T ss_dssp CEEEEECC---
T ss_pred CccEEEECCCc
Confidence 89999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 429 | ||||
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 4e-49 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 1e-44 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 1e-42 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 2e-42 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 1e-40 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 6e-40 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 8e-40 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 2e-38 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 5e-37 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 9e-37 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 1e-36 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-36 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-35 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 1e-34 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-34 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 6e-34 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 9e-34 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-33 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 5e-33 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 7e-33 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 4e-32 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 4e-32 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 5e-32 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 2e-31 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-31 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 6e-31 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 9e-31 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 2e-30 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-30 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-29 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 1e-29 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 1e-29 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 2e-29 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 3e-29 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 5e-29 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 5e-29 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 1e-28 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 2e-28 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-28 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 8e-28 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-27 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 8e-27 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-26 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 2e-26 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 4e-26 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 2e-25 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 8e-25 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 1e-24 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-24 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-24 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 6e-24 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-23 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 5e-23 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 2e-22 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 4e-22 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-21 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-21 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 8e-21 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 7e-18 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 8e-18 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-12 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 5e-12 | |
| d1uh5a_ | 329 | c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite | 2e-11 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 3e-11 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-10 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 8e-10 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 6e-09 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 5e-08 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 1e-07 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-06 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 9e-06 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 3e-05 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 8e-05 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 9e-05 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 2e-04 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-04 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 4e-04 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-04 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 0.001 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 0.002 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 0.002 |
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 166 bits (420), Expect = 4e-49
Identities = 65/285 (22%), Positives = 121/285 (42%), Gaps = 37/285 (12%)
Query: 143 KIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ +VTG N GIG AI R+L + V++ RD+ + + A ++ L+++ + D
Sbjct: 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ--LQAEGLSPRFHQLD 61
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +SIRA + ++KE ++VL+NNAG++ + E+ + N G +
Sbjct: 62 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 121
Query: 260 LLLDKLQAN---------LSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLN 310
LL ++ +S +L + + + + + + +
Sbjct: 122 ELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGV 181
Query: 311 SENSYDPTQAYNQSKLANVLFTRELAKRL----EGTGITVNAVHPGIVNTDILRHSSYYD 366
+ P+ AY +K+ + +R A++L +G I +NA PG V TD+
Sbjct: 182 HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK---- 237
Query: 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVY-ASLDPSLENVSGKYFA 410
KSP +GA+T VY A L P E G++ +
Sbjct: 238 --------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS 268
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 154 bits (390), Expect = 1e-44
Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 37/266 (13%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R ++ +VTGA+ GIG A+AR L ++ KV+ R + E+ E ++ +C
Sbjct: 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 68
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
DL+++E I + ++ ++ +++ INNAG++ +L + + VN + + T
Sbjct: 69 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 128
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
++ + IIN++S++ R T
Sbjct: 129 REAYQSMKE----------------RNVDDGHIININSMSGHRV----------LPLSVT 162
Query: 319 QAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVL 374
Y+ +K A T L + L T I + PG+V T + +T
Sbjct: 163 HFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQ 222
Query: 375 KPLVWLFIKSPRQGAQTIVYASLDPS 400
+ P A+ ++Y P+
Sbjct: 223 MKCL-----KPEDVAEAVIYVLSTPA 243
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 148 bits (374), Expect = 1e-42
Identities = 64/276 (23%), Positives = 105/276 (38%), Gaps = 43/276 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
V+VTGAN GIG + ++L K K +I RD++K + + K+ V
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLP 57
Query: 200 CDLASQESIRAFAEEVKKENKK--INVLINNAGVSGCRKML---TEEKIELQLGVNHMGH 254
+ +S+ F +V + +++LINNAGV I QL VN
Sbjct: 58 LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
LLT LL L+ S+ S L + S + +++ D S ++
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT------------DNTSGSA 165
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374
P AY SK A +F R LA L+ + V PG V T++ +
Sbjct: 166 QFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN------------ 213
Query: 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410
+ Q ++ + + +G++F
Sbjct: 214 ------AALTVEQSTAELISSFNKLDNSH-NGRFFM 242
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 147 bits (373), Expect = 2e-42
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 36/256 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K VI A GIG +REL KR K + ++ + + K + D
Sbjct: 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVN-ITFHTYD 63
Query: 202 LA-SQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
+ + +++ + K +++LIN AG +L + +IE + +N G T
Sbjct: 64 VTVPVAESKKLLKKIFDQLKTVDILINGAG------ILDDHQIERTIAINFTGLVNTTTA 117
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+LD ++ + I N+ SV
Sbjct: 118 ILD---------------FWDKRKGGPGGIIANICSVTGFNA------------IHQVPV 150
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWL 380
Y+ SK A V FT LAK TG+T +++PGI T ++ + + V L
Sbjct: 151 YSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS-H 209
Query: 381 FIKSPRQGAQTIVYAS 396
++ Q Q V A
Sbjct: 210 PTQTSEQCGQNFVKAI 225
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (360), Expect = 1e-40
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+IV++TGA GIG+ A E AK K+K+++ + E+ + + V D
Sbjct: 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK--CKGLGAKVHTFVVD 64
Query: 202 LASQESIRAFAEEVKKENKKINVLINNA--GVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+++E I + A++VK E +++L+NNA + + +IE VN + HF T
Sbjct: 65 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTK 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L ++ I+ V+S A
Sbjct: 125 AFLPA------------------MTKNNHGHIVTVASAAGHVSVPF------------LL 154
Query: 320 AYNQSKLANVLFTRELAKRL---EGTGITVNAVHPGIVNTDILRHSS 363
AY SK A V F + L L + TG+ + P VNT +++ S
Sbjct: 155 AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS 201
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 141 bits (357), Expect = 6e-40
Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 37/227 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K+ I+TG++ GIG+A A A+ AKV + R ++ E+ R++++ + V
Sbjct: 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVA 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGH 254
D+ + + K+++L+NNAG + + E + L +N
Sbjct: 65 DVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSV 124
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
LT + + + S + T +
Sbjct: 125 IALTKKAVPH------------------LSSTKGEIVNISSIASGLHATPD--------- 157
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y+ +K A +TR A L GI VN++ PG+V T
Sbjct: 158 ---FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSA 201
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (355), Expect = 8e-40
Identities = 69/267 (25%), Positives = 110/267 (41%), Gaps = 40/267 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA GIG+A A L + AKV + +L+ + + + + + + L +CD
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+A Q+ +R +V ++++L+NNAGV+ E+ E L +N + T L
Sbjct: 63 VADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLG 116
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
LD + IIN+SS+A Y
Sbjct: 117 LDYMSKQNGGEG---------------GIIINMSSLAGLMPVAQ------------QPVY 149
Query: 322 NQSKLANVLFTRE--LAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
SK V FTR LA L +G+ +NA+ PG VNT IL ++ + K +
Sbjct: 150 CASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIK 209
Query: 380 LFIKSPRQG-----AQTIVYASLDPSL 401
IK A ++ D +L
Sbjct: 210 DMIKYYGILDPPLIANGLITLIEDDAL 236
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 137 bits (346), Expect = 2e-38
Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 40/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK V+VTG GIG+AIA+ A+ A V + KEV + + D
Sbjct: 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-----PEGKEVAEAIGGAFF---QVD 56
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L + F EE +++VL+NNA ++ L + L VN L+
Sbjct: 57 LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSA 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + ++ I+NV+SV
Sbjct: 117 LAARE------------------MRKVGGGAIVNVASVQGLFAEQE------------NA 146
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
AYN SK V TR LA L I VNAV PG + T+ + +
Sbjct: 147 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEA 189
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (336), Expect = 5e-37
Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 40/223 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+V+VTG GIG I R A+V++ +D +E+ + CD
Sbjct: 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRK---MLTEEKIELQLGVNHMGHFLLT 258
+ ++ ++ E + +++ ++NNAG + + + L +N +G + LT
Sbjct: 60 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 119
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L L L+ + +IN+SS+ G
Sbjct: 120 KLALPYLRKS-------------------QGNVINISSLVGAIGQAQ------------A 148
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K A T+ LA G+ VN + PG + T +
Sbjct: 149 VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE 191
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 132 bits (334), Expect = 9e-37
Identities = 57/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ ++TG GIG+AIA A A + +A E + + + VL KCD
Sbjct: 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLV----PAPEAEAAIRNLGRRVLTVKCD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++ + AF ++V + ++L+NNAG+ LT E+ + +N FL+
Sbjct: 61 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + + RIIN++S + +
Sbjct: 121 AFVPG------------------MKRNGWGRIINLTSTTYWLK------------IEAYT 150
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
Y +K AN+ FTR LA L GITVNA+ P +V T S
Sbjct: 151 HYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS 193
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 132 bits (333), Expect = 1e-36
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 36/240 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ I+TG GIG AIA + + AKV++ R D EKA K V + ++ + D
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFF---QHD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+ ++ + +K ++ L+NNAG++ + + T + L VN G F T
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTR 122
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L + +++ + IIN+SS+ G +
Sbjct: 123 LGIQRMKNK-----------------GLGASIINMSSIEGFVGDPS------------LG 153
Query: 320 AYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377
AYN SK A + ++ A + VN VHPG + T ++ + +S P+
Sbjct: 154 AYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPM 213
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 132 bits (332), Expect = 2e-36
Identities = 53/230 (23%), Positives = 85/230 (36%), Gaps = 35/230 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG I ELA A V R+ + + SK V CD
Sbjct: 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ--WRSKGFKVEASVCD 65
Query: 202 LASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
L+S+ + V + K+N+L+NNAG+ ++ T E L + +N + L+
Sbjct: 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 125
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+L + + S ++ +SSV+
Sbjct: 126 VLA------------------HPFLKASERGNVVFISSVSGALA------------VPYE 155
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
Y +K A TR LA I VN V PG++ T ++ +
Sbjct: 156 AVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQ 205
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 128 bits (324), Expect = 3e-35
Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 40/225 (17%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTG +G+G + + L AKV + + ++ E+ + + + D
Sbjct: 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
++S+ V++ +NVL+NNAG+ M E L +N F+
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQ 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ ++ IIN++SV+
Sbjct: 121 QGIAAMKET-------------------GGSIINMASVSSWLPIEQ------------YA 149
Query: 320 AYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHS 362
Y+ SK A TR A G I VN++HP + T +++ S
Sbjct: 150 GYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS 194
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 127 bits (320), Expect = 1e-34
Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 37/232 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
K VI+TG++ GIG+ A A+ A V + R ++ E+ R+ ++ K V
Sbjct: 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML------TEEKIELQLGVNHMGH 254
D+ +++ K+ KI+VL+NNAG + + L +N
Sbjct: 65 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAV 124
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+T + L A+ + S VA + +
Sbjct: 125 IEMTKKVKPHLVASKGEI------------------VNVSSIVAGPQAQPD--------- 157
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD 366
Y +K A +TR A L GI VN+V PG+V T D
Sbjct: 158 ---FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPD 206
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 125 bits (316), Expect = 4e-34
Identities = 65/257 (25%), Positives = 95/257 (36%), Gaps = 32/257 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K +IVTG N GIG A R +A A V + R + ++V E K +CD
Sbjct: 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK-TKAYQCD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+++ + + +++ + I+ LI NAGVS + LT E VN G F
Sbjct: 68 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN--- 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
C + Q+ I+ SS++ + +S N
Sbjct: 125 --------------TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-----SSLNGSLTQV 165
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLKPL 377
YN SK A + LA GI VNA+ PG VNTD H D S + L
Sbjct: 166 FYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRF 225
Query: 378 VWLFIKSPRQGAQTIVY 394
P + +
Sbjct: 226 A-----QPEEMTGQAIL 237
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 125 bits (316), Expect = 6e-34
Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 35/225 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV-LESKNKYVLCRKC 200
GK VI+TG++ GIG++ A AK A+V + R+ D+ E+ +++++ + +
Sbjct: 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML----TEEKIELQLGVNHMGHFL 256
D+ + KI++L+NNAG + E + +N
Sbjct: 64 DVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 123
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+T + I + P
Sbjct: 124 MTQ------KTKEHLIKTKGEIVNVSSIVAGPQAHSGYP--------------------- 156
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K A +TR A L G+ VN+V PG V T +
Sbjct: 157 ---YYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGA 198
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 124 bits (313), Expect = 9e-34
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G++ +VTG + G+G IA+ LA+ V++A R+L++ +A +++ E + +CD
Sbjct: 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRCD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+++ E ++ E VK++ K++ ++N AG++ R E ++ V +
Sbjct: 64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGINR-RHPAEEFPLDEFRQVIEV--------- 113
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
NL + + +ES IIN+ S+ + T AY
Sbjct: 114 ------NLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVT-----------MPNISAY 156
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
SK T+ LAK GI VN + PG T +
Sbjct: 157 AASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE 195
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 123 bits (310), Expect = 3e-33
Identities = 53/240 (22%), Positives = 81/240 (33%), Gaps = 35/240 (14%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+ K V+VTG GIG AI E A A + R+ + + + + K V C
Sbjct: 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK--WQKKGFQVTGSVC 64
Query: 201 DLASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLL 257
D + + + V K+++LINN G + L T E + N + L
Sbjct: 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHL 124
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ L + S II +SS+A
Sbjct: 125 SQLAHPL------------------LKASGCGNIIFMSSIAGVVS------------ASV 154
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377
Y+ +K A R LA GI NAV P ++ T + + + KPL
Sbjct: 155 GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPL 214
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 124 bits (312), Expect = 5e-33
Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 36/223 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK----EVVLESKNKYVLC 197
G++V+VTGA G+G+A A A+R A V++ D + + V+E +
Sbjct: 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK 66
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHF 255
+ S E+ + +I+V++NNAG+ R +++E ++ V+ G F
Sbjct: 67 AVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF 126
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+T D ++ RII +S + G
Sbjct: 127 QVTRAAWDHMKKQ------------------NYGRIIMTASASGIYGNFG---------- 158
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
Y+ +KL + L I N + P +
Sbjct: 159 --QANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMT 199
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 122 bits (307), Expect = 7e-33
Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 27/221 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++V++TG +G+G+A A LA AK+ + + E ++ V+ + + VL D
Sbjct: 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVAD 63
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ + + A+ + +I+ NNAG+ G + V +
Sbjct: 64 VSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLR------ 117
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
L + +E ++N +SV RG N Y
Sbjct: 118 ---------GVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGN------------QSGY 156
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
+K V TR A GI +NA+ PG + T ++ +S
Sbjct: 157 AAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENS 197
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 4e-32
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV---LESKNKYVLCR 198
G++ IVTG TGIGKAI +EL + + V++A R L++ + A E+ +K V+
Sbjct: 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI 71
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFL 256
+C++ ++E + + KIN L+NN G + ++ + L N G F
Sbjct: 72 QCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFY 131
Query: 257 LTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYD 316
+ + ++ + I V + A ++
Sbjct: 132 MCKAV----------------YSSWMKEHGGSIVNIIVPTKAGFPLAVH----------- 164
Query: 317 PTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
++ T+ LA +GI +N V PG++ +
Sbjct: 165 ----SGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVE 205
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 120 bits (302), Expect = 4e-32
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK VI+TG G+G AR+ A+V++A ++ +E+ + D
Sbjct: 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ +E + ++E ++ L+NNAG+S + + E+ + +N G F+
Sbjct: 60 VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMK 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ ++ I+N+SS A T
Sbjct: 120 TVIPAMKDA------------------GGGSIVNISSAAGLM------------GLALTS 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+Y SK ++ A L I VN+VHPG+ T +
Sbjct: 150 SYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE 191
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (302), Expect = 5e-32
Identities = 51/259 (19%), Positives = 89/259 (34%), Gaps = 47/259 (18%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK VIVTGA+ GIG+ +A LAK A V++ R + +K LE
Sbjct: 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH-CLELGAASAHYIAG 71
Query: 201 DLASQESIRAFAEEVKKENKKINVLINN--AGVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
+ F + K +++LI N S + + VN + + +LT
Sbjct: 72 TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLT 131
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L L+ + I+ VSS+A K
Sbjct: 132 VAALPMLKQS-------------------NGSIVVVSSLAGKVAYPM------------V 160
Query: 319 QAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
AY+ SK A F + K +++ G+++T+ + +
Sbjct: 161 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKA-----------VSG 209
Query: 377 LVWLFIKSPRQGAQTIVYA 395
+V + + A I+
Sbjct: 210 IVHMQAAPKEECALEIIKG 228
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 118 bits (296), Expect = 2e-31
Identities = 64/261 (24%), Positives = 108/261 (41%), Gaps = 37/261 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ +VTGA GIG+ IA+ LAK + VI R C+ E ++S D
Sbjct: 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE--IKSFGYESSGYAGD 67
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ +E I ++ E+K +++L+NNAG++ ++ +
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRD----------------NLFLRMKNDEW 111
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
D L+ NL+ + RIIN+SS+ G + Y
Sbjct: 112 EDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVG------------QANY 159
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLKPLVW 379
+ SK + FT+ LAK L ITVNA+ PG +++D+ S + +S + +
Sbjct: 160 SSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMG- 218
Query: 380 LFIKSPRQGAQTIVYASLDPS 400
+P + A + S D S
Sbjct: 219 ----TPEEVANLACFLSSDKS 235
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 117 bits (294), Expect = 4e-31
Identities = 52/257 (20%), Positives = 86/257 (33%), Gaps = 47/257 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K V++TGA GIG+A AK A+++ + +A + V V D
Sbjct: 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPV---VMD 57
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLTM 259
+A S+ E +++ +++ AG++ + E EL L VN G FL+
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAK 117
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+E P I+ +S +
Sbjct: 118 AA------------------SEAMREKNPGSIVLTASRVYL-------------GNLGQA 146
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLKPL 377
Y S V TR LA L GI VN + PG + T + + ++ L
Sbjct: 147 NYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRA 206
Query: 378 VWLFIKSPRQGAQTIVY 394
P + A ++
Sbjct: 207 G-----KPLEVAYAALF 218
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 117 bits (293), Expect = 6e-31
Identities = 46/291 (15%), Positives = 92/291 (31%), Gaps = 56/291 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRK---AKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
+ ++TGA+ G G+A+A +LA+ + ++++ R + ++E+ + + V+
Sbjct: 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLA 65
Query: 199 KCDLASQESIRAF----AEEVKKENKKINVLINNAGVSGCRKM-----LTEEKIELQLGV 249
DL ++ ++ E + E + +LINNA G ++ +
Sbjct: 66 AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125
Query: 250 NHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDL 309
N LT L+ Q + I +
Sbjct: 126 NLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWG------------------ 167
Query: 310 NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS------ 363
Y K A + + LA E + V + PG ++ D+ + +
Sbjct: 168 ----------LYCAGKAARDMLYQVLAA--EEPSVRVLSYAPGPLDNDMQQLARETSKDP 215
Query: 364 -YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413
LV AQ ++ + SG + YD
Sbjct: 216 ELRSKLQKLKSDGALV-----DCGTSAQKLLGLLQKDTF--QSGAHVDFYD 259
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 9e-31
Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 33/221 (14%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK I+TGA GIGK IA A A V+++ + D E ++ +CD
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE--IQQLGGQAFACRCD 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM-LTEEKIELQLGVNHMGHFLLTML 260
+ S++ + A A+ + K+++L+NNAG G + + +N F L+ L
Sbjct: 69 ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQL 128
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
+ +++ N L + +
Sbjct: 129 VAPEMEKNGGGVILTITSMAAENK------------------------------NINMTS 158
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y SK A R +A L I VN + PG + TD L+
Sbjct: 159 YASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS 199
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (290), Expect = 2e-30
Identities = 57/282 (20%), Positives = 99/282 (35%), Gaps = 56/282 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V+VTGA GIG+ + L A+V+ R + +E + D
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
L E+ V +++L+NNA V+ +T+E + VN ++
Sbjct: 61 LGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQ 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ + P I+NVSS +R N
Sbjct: 117 IVAR-----------------GLIARGVPGAIVNVSSQCSQRAVTNH------------S 147
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----SYYDSWLSTVVLK 375
Y +K A + T+ +A L I VNAV+P +V T + + + + L+ + L
Sbjct: 148 VYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLG 207
Query: 376 PLVWLFIKSPRQGAQTIVY-ASLDPSLEN-----VSGKYFAC 411
I++ S + V G ++AC
Sbjct: 208 KFA-----EVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWAC 244
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 115 bits (288), Expect = 3e-30
Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 37/222 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +V+G G+G + R + AKV+ ++ + E L +YV D
Sbjct: 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE--LADAARYV---HLD 60
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ +A + ++VL+NNAG+ + + + L VN G F
Sbjct: 61 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVF---- 116
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L +E+ IIN+SS+
Sbjct: 117 --------------LGIRAVVKPMKEAGRGSIINISSIEGL------------AGTVACH 150
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K A T+ A L +GI VN++HPG+V T +
Sbjct: 151 GYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW 192
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 114 bits (285), Expect = 1e-29
Identities = 50/221 (22%), Positives = 78/221 (35%), Gaps = 29/221 (13%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +VTGA IG A A LA+ + + + + EKA + K CD
Sbjct: 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS--VREKGVEARSYVCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ S+E++ + V ++ KI+ L NNAG G + + + V +
Sbjct: 63 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVT------ 116
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
RI+N +S+A +G AY
Sbjct: 117 ---------GAFHVLKAVSRQMITQNYGRIVNTASMAGVKG------------PPNMAAY 155
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
SK A + T A L I VNA+ PG + +
Sbjct: 156 GTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWER 196
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 113 bits (284), Expect = 1e-29
Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTGA GIG+ + L AKV+ R KE + D
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
L ++ + +++L+NNA + + L T+E + VN F ++
Sbjct: 59 LGDWDATEKALGGI----GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQ 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ + P I+NVSS+ N
Sbjct: 115 MVAR-----------------DMINRGVPGSIVNVSSMVAHVTFPNL------------I 145
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y+ +K A + T+ +A L I VN+V+P +V TD+ +
Sbjct: 146 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGK 186
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 113 bits (284), Expect = 1e-29
Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 41/220 (18%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
IVT G A L++ V + ++ + S
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET--------YPQLKPMS 54
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLTMLL 261
++ E V +++VL++N + + + E + + F L
Sbjct: 55 EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA- 113
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
A+ + I + + Y
Sbjct: 114 ----VASQMKKRKSGHIIFITSA-------------------------TPFGPWKELSTY 144
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
++ L+K L I V A+ P ++++ +
Sbjct: 145 TSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPY 184
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 112 bits (282), Expect = 2e-29
Identities = 53/267 (19%), Positives = 90/267 (33%), Gaps = 53/267 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAK-------VIMACRDLDKCEKARKEVVLESKNKYV 195
I+++TGA GIG+AIA E A+ ++++ R EK E ++
Sbjct: 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE--CRAEGALT 59
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMG 253
D++ +R + + I+ L+NNAGV + TEE + + N G
Sbjct: 60 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKG 119
Query: 254 HFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSEN 313
F LT L + + + I ++SVA + +
Sbjct: 120 TFFLTQAL------------------FALMERQHSGHIFFITSVAATKAFRH-------- 153
Query: 314 SYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373
+ Y SK + + + V PG V T +
Sbjct: 154 ----SSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK------------ 197
Query: 374 LKPLVWLFIKSPRQGAQTIVYASLDPS 400
+ + + P A +V A L PS
Sbjct: 198 VDDEMQALMMMPEDIAAPVVQAYLQPS 224
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 113 bits (284), Expect = 3e-29
Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 28/216 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK+ +TG TG+GK + L+ A+ ++A R +D + +++ ++ NK V +CD
Sbjct: 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK-VHAIQCD 83
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ + ++ E+ K N++INNA + +
Sbjct: 84 VRDPDMVQNTVSELIKVAGHPNIVINNA-AGNFISPTERLSPNAWKTITDIVLN------ 136
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
+ I + + + ++++++ + G+
Sbjct: 137 --------GTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF------------VVPS 176
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD 357
+K ++ LA G+ N + PG + T
Sbjct: 177 ASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTK 212
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 112 bits (281), Expect = 5e-29
Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 36/224 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
K+ I+TG GIG+ A+ + AKV++A D +K + + CD
Sbjct: 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCD 62
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM----LTEEKIELQLGVNHMGHFLL 257
+ E +R + ++ K++++ N GV E + + +N G FL+
Sbjct: 63 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 122
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ I+ +S++
Sbjct: 123 AKHAARV------------------MIPAKKGSIVFTASISSFTA-----------GEGV 153
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
+ Y +K A + T L L GI VN V P IV + +L
Sbjct: 154 SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTD 197
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 112 bits (280), Expect = 5e-29
Identities = 61/219 (27%), Positives = 81/219 (36%), Gaps = 28/219 (12%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
++ +VTGA +GIG IAR L K +V + R + KE L R CD
Sbjct: 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ S I A V + ++VL+NNAG E EL L V
Sbjct: 60 VRSVPEIEALVAAVVERYGPVDVLVNNAGRP-GGGATAELADELWLDVVETNLTG----- 113
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
++ E RI+N++S K Y
Sbjct: 114 --------VFRVTKQVLKAGGMLERGTGRIVNIASTGGK------------QGVVHAAPY 153
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
+ SK V FT+ L L TGITVNAV PG V T +
Sbjct: 154 SASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA 192
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 111 bits (279), Expect = 1e-28
Identities = 49/229 (21%), Positives = 77/229 (33%), Gaps = 44/229 (19%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G+ V++TG +G+G+A+ AKV + + ++ + + VL D
Sbjct: 5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD-----HGDNVLGIVGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML-------TEEKIELQLGVNHMGH 254
+ S E + A KI+ LI NAG+ L + + +N G+
Sbjct: 60 VRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGY 119
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
L L A+ +I S A
Sbjct: 120 IHAVKACLPALVAS-------------------RGNVIFTISNAGFYPNGG--------- 151
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS 363
Y +K A V RELA L + VN V G +N+D+ SS
Sbjct: 152 ---GPLYTAAKHAIVGLVRELAFEL-APYVRVNGVGSGGINSDLRGPSS 196
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 110 bits (276), Expect = 2e-28
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 35/230 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
G +VTG + GIG AI ELA A+V R+ + ++ + K V CD
Sbjct: 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI--WREKGLNVEGSVCD 63
Query: 202 LASQESIRAFAEEVKKE-NKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
L S+ + V + K+N+L+NNAGV ++ TE+ + +G N +
Sbjct: 64 LLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY--- 120
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ I Y + + S +I +SS+A
Sbjct: 121 ---------------HLSQIAYPLLKASQNGNVIFLSSIAGFSA------------LPSV 153
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
Y+ SK A T+ LA I VN+V PG++ T ++ + +
Sbjct: 154 SLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPH 203
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 109 bits (274), Expect = 3e-28
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 30/221 (13%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ +VTG+ +GIG IA LA + A +++ D + EK R + + K VL
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK-VLYDGA 62
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
DL+ E++R + ++ +I++L+NN ++ + E + +
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNN-AGIQHTALIEDFPTEKWDAILAL-------- 113
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
NLS ++ RIIN++S + N A
Sbjct: 114 -------NLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASAN------------KSA 154
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y +K V FT+ A G GIT NA+ PG V T ++
Sbjct: 155 YVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK 195
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 108 bits (271), Expect = 8e-28
Identities = 50/231 (21%), Positives = 84/231 (36%), Gaps = 38/231 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKC 200
GK+ + TGA GIG+ IA EL +R A V++ E+ E L+ + +
Sbjct: 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE--LKKLGAQGVAIQA 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLT 258
D++ + A ++ ++ +++N+G+ L T+E + +N G F +
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
L + I A G P
Sbjct: 124 QQGLKHCRRG-------GRIILTSS------------IAAVMTGI-------------PN 151
Query: 319 QAY-NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
A SK A F R A G+TVN + PG V TD+ +S++ +
Sbjct: 152 HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAP 202
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 107 bits (269), Expect = 2e-27
Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 34/224 (15%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLC 197
S GK+ +VTGA GIG+ +A EL +R KVI+ + + E+ ++ C
Sbjct: 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAA--IKKNGSDAAC 72
Query: 198 RKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLL 257
K ++ E I EE K K++++ +N+GV + E
Sbjct: 73 VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN----- 127
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
+ R+I + S+ + P
Sbjct: 128 -------------TRGQFFVAREAYKHLEIGGRLILMGSITGQAK------------AVP 162
Query: 318 TQAYNQ-SKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
A SK A F R +A + ITVN V PG + TD+
Sbjct: 163 KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYH 206
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 105 bits (264), Expect = 8e-27
Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 34/222 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKC 200
GK+V++TG++TG+GK++A A KAKV++ R D+ +E ++ + K
Sbjct: 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE--IKKVGGEAIAVKG 64
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM--LTEEKIELQLGVNHMGHFLLT 258
D+ + + + KE K++V+INNAG+ ++ + N G FL +
Sbjct: 65 DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGS 124
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ N + ++ N+ +
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVH--------------------------- 157
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y SK L T LA GI VN + PG +NT I
Sbjct: 158 --YAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA 197
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 104 bits (261), Expect = 1e-26
Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 50/287 (17%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCD 201
+V+VTGA+ GIGKAIA L K KV++ R E+ K+ +E+ + D
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ--IEAYGGQAITFGGD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHM--GHFLLTM 259
++ + + A + I+V++NNAG++ ++ +K + ++ G FL T
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ RIIN++SV G I
Sbjct: 120 AATKIMMKK------------------RKGRIINIASVVGLIGNIG------------QA 149
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR--HSSYYDSWLSTVVLKPL 377
Y +K + F++ A+ I VN V PG + +D+ L T+ L
Sbjct: 150 NYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRT 209
Query: 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGRFS 424
P A + + +L P+ ++G+ F +DG +
Sbjct: 210 G-----QPENVAGLVEFLALSPAASYITGQAF--------TIDGGIA 243
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 104 bits (261), Expect = 2e-26
Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 43/255 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++VTGA +GIG+A A+ A ++ R+ +A LE++ V D
Sbjct: 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA--LEAEAIAV---VAD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ +++ A E +E +++ + + A GV H L
Sbjct: 60 VSDPKAVEAVFAEALEEFGRLHGVAHFA------------------GVAHSALSWNLPLE 101
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
+ ++ + ++ SVA Y
Sbjct: 102 AWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------AFGLAHY 148
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR--HSSYYDSWLSTVVLKPLVW 379
KL V R LA L G+ VN + PG++ T + ++ + L
Sbjct: 149 AAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAG- 207
Query: 380 LFIKSPRQGAQTIVY 394
P + AQ ++
Sbjct: 208 ----RPEEVAQAALF 218
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 103 bits (258), Expect = 4e-26
Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 33/221 (14%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K+ +VTGA GIGKAIA L K V +A + + E + + + K D+
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE--INQAGGHAVAVKVDV 59
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLG--VNHMGHFLLTML 260
+ ++ + A E+ +K +V++NNAGV+ + + + +N G
Sbjct: 60 SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQA 119
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
++ + + N +
Sbjct: 120 AVEAFKKEGHGGKIINACSQAGHVGNPEL-----------------------------AV 150
Query: 321 YNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y+ SK A T+ A+ L GITVN PGIV T +
Sbjct: 151 YSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE 191
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 2e-25
Identities = 45/226 (19%), Positives = 78/226 (34%), Gaps = 35/226 (15%)
Query: 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIM---ACRDLDKCEKARKEV-VLESKNKYV 195
AR +V++TG ++GIG +A LA ++ RDL + + L +
Sbjct: 1 AR-TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSL 59
Query: 196 LCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHF 255
+ D+ +S+ A E V + + V G+ G + L E+ + L VN +G
Sbjct: 60 ETLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV 119
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ L + + R++ SV G
Sbjct: 120 RMLQAFLPDM------------------KRRGSGRVLVTGSVGGLMGLPF---------- 151
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
Y SK A LA L G+ ++ + G V+T +
Sbjct: 152 --NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEK 195
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 99.8 bits (248), Expect = 8e-25
Identities = 49/255 (19%), Positives = 89/255 (34%), Gaps = 48/255 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+VTG N GIG AIA+ LA KV + R + + + D
Sbjct: 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVD 53
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ +++ V++ + VL++NAG+S ++ + + + +N
Sbjct: 54 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTG------ 107
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
Q + R+I + SV+ G Y
Sbjct: 108 ----------AFRVAQRASRSMQRNKFGRMIFIGSVSGLWG------------IGNQANY 145
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--YYDSWLSTVVLKPLVW 379
SK + R +A+ L +T N V PG ++TD+ R L + K +
Sbjct: 146 AASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVG- 204
Query: 380 LFIKSPRQGAQTIVY 394
+P + A + +
Sbjct: 205 ----TPAEVAGVVSF 215
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 100 bits (249), Expect = 1e-24
Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 36/221 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK ++TG+ GIG+A A + A+V +A +L+ E+ D
Sbjct: 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALD 59
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVS--GCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ Q SI E+ I++L+NNA + +T E + +N G +
Sbjct: 60 VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQ 119
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+ + A + N+
Sbjct: 120 AVARAMIAGGRGGKIINMASQA-----------------------------GRRGEALVG 150
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
Y +K A + T+ L GI VNA+ PG+V+ +
Sbjct: 151 VYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD 191
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 98.3 bits (244), Expect = 3e-24
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 40/255 (15%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GKI +VTGA+ GIG+AIA LA R AKVI + + + +
Sbjct: 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLN 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ SI + E+++ E ++++L+NNAG++ ++ +
Sbjct: 59 VTDPASIESVLEKIRAEFGEVDILVNNAGITRD----------------NLLMRMKDEEW 102
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
D ++ NLS + + RII + SV G Y
Sbjct: 103 NDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGG------------QANY 150
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--DSWLSTVVLKPLVW 379
+K + F++ LA+ + GITVN V PG + TD+ R S L+ V L
Sbjct: 151 AAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLG- 209
Query: 380 LFIKSPRQGAQTIVY 394
++ A + +
Sbjct: 210 ----GAQEIANAVAF 220
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 98.0 bits (243), Expect = 4e-24
Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 47/226 (20%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
+ V+V G +G + R V D+ + E+A V+++
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEASASVIVK-------MTDSF 52
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEK---IELQLGVNHMGHFLLT 258
+ + A ++ + K++ ++ AG ++ +L + + +
Sbjct: 53 TEQADQVTAEVGKLLGDQ-KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 111
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ + A GT
Sbjct: 112 --------------------HLATKHLKEGGLLTLAGAKAALDGTPG------------M 139
Query: 319 QAYNQSKLANVLFTRELAKRLEGTG--ITVNAVHPGIVNTDILRHS 362
Y +K A + LA + G AV P ++T + R S
Sbjct: 140 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKS 185
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.9 bits (243), Expect = 6e-24
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 42/229 (18%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK++I+T A GIG+A A A+ AKVI + K ++ K + R D
Sbjct: 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRVLD 58
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML--TEEKIELQLGVNHMGHFLLTM 259
+ ++ I FA EV ++++VL N AG +L E+ + + +N +L+
Sbjct: 59 VTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIK 114
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L K IIN+SSVA
Sbjct: 115 AFLPK------------------MLAQKSGNIINMSSVASSVK-----------GVVNRC 145
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368
Y+ +K A + T+ +A GI N V PG V+T L+
Sbjct: 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGN 194
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 96.9 bits (240), Expect = 2e-23
Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 22/261 (8%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
++TG IG +IA L ++ +V++ R + + + ++ + K DL+
Sbjct: 4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 63
Query: 205 ----QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
+ + + + +VL+NNA +L + +
Sbjct: 64 SSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQ----- 118
Query: 261 LLDKLQANLSRYSLCNLIW-YYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
++ N + ++ + A + + + +N D ++
Sbjct: 119 --------VAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFC 170
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
Y +K A TR A L I VNAV PG+ + + V L
Sbjct: 171 VYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQEEYRRKVPLGQ--- 227
Query: 380 LFIKSPRQGAQTIVYASLDPS 400
S Q A I + +
Sbjct: 228 -SEASAAQIADAIAFLVSKDA 247
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 95.2 bits (235), Expect = 5e-23
Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 143 KIVIVTGANTGIGKAIAR---ELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
+++TG N G+G + + L + + CR+ ++ ++ L + + +
Sbjct: 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED---LAKNHSNIHILE 59
Query: 200 CDLASQESIRAFAEE---VKKENKKINVLINNAG--VSGCRKMLTEEKIELQLGVNHMGH 254
DL + ++ + V K+ + N S + +++ L N +
Sbjct: 60 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 119
Query: 255 FLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENS 314
+L L L+ + I S + +G N+
Sbjct: 120 IMLAKACLPLLKKAAKANESQPMGVGRAAI------INMSSILGSIQG----------NT 163
Query: 315 YDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS 362
AY SK A T+ L+ L I ++HPG V TD+ S
Sbjct: 164 DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSS 211
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (232), Expect = 2e-22
Identities = 48/226 (21%), Positives = 74/226 (32%), Gaps = 27/226 (11%)
Query: 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR 198
S +G + ++TG +G+G A A L + A ++ E K++
Sbjct: 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVT 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHF 255
A + + + I A + K T E + L VN MG F
Sbjct: 62 SEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTF 121
Query: 256 LLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSY 315
+ R + Q IIN +SVA G +
Sbjct: 122 NVI------------RLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVG---------- 159
Query: 316 DPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361
AY+ SK V T +A+ L GI V + PG+ T +L
Sbjct: 160 --QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS 203
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 92.6 bits (229), Expect = 4e-22
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 43/221 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
+ +VTG +G+G+A A L R +V++ + + ++ + D+
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGED--------------LIYVEGDV 47
Query: 203 ASQESIRAFAEEVKKENKKINVLINN-----AGVSGCRKMLTEEKIELQLGVNHMGHFLL 257
+E +R ++E V+ + G E L VN +G F +
Sbjct: 48 TREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 107
Query: 258 TMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP 317
L ++ E I+N +SVA G I
Sbjct: 108 LRLAAWAMRE------------NPPDAEGQRGVIVNTASVAAFEGQIG------------ 143
Query: 318 TQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358
AY SK V T A+ L G GI V V PG+ +T +
Sbjct: 144 QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL 184
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 90.5 bits (224), Expect = 2e-21
Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 57/259 (22%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
R K V+V A+ GIG+A+A L++ A+V + R+ + +++ V C
Sbjct: 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----------VC 51
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNA--GVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
D +R + + ++ K++++L+ NA +G LT E + + +
Sbjct: 52 D------LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI--- 102
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ +E RI+ ++S + N NS
Sbjct: 103 ---------------KIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNS------- 140
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS---SYYDSWLSTVVLK 375
+++A F + L+ + GITVN V PG T+ ++ S + ++
Sbjct: 141 -----ARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMR 195
Query: 376 PLVWLFIKSPRQGAQTIVY 394
+ P + A + +
Sbjct: 196 RMA-----KPEEIASVVAF 209
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 90.3 bits (223), Expect = 2e-21
Identities = 34/270 (12%), Positives = 62/270 (22%), Gaps = 59/270 (21%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
GK VIV G +G AI K V+ + N V K
Sbjct: 3 GK-VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND---------QADSNILVDGNKNW 52
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKML---TEEKIELQLGVNHMGHFLLT 258
++SI + +++ + AG + +L + +
Sbjct: 53 TEQEQSILEQTASS-LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSS---- 107
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ + A
Sbjct: 108 ----------------AIAAKLATTHLKPGGLLQLTGAAAAMGP------------TPSM 139
Query: 319 QAYNQSKLANVLFTRELAKRLEGTG--ITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376
Y +K A T LA + G V + P ++T W+
Sbjct: 140 IGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------MNRKWMPNADHSS 193
Query: 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSG 406
++ ++ + + S SG
Sbjct: 194 WT-----PLSFISEHLLKWTTETSSRPSSG 218
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 89.1 bits (220), Expect = 8e-21
Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 40/259 (15%)
Query: 142 GKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK +V G +G AIA +L + A+V ++ + +A K L +
Sbjct: 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKL---AEALGGALLFR 64
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
D+ E + A VK+ ++ L++ + G ++ T
Sbjct: 65 ADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPRE--------------AMEGRYIDTR 110
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
L +S YSL + I+ ++ A ++
Sbjct: 111 RQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPK------------YN 158
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY----YDSWLSTVVLK 375
+K A R LA L G+ VNA+ G V T R YD T L+
Sbjct: 159 VMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR 218
Query: 376 PLVWLFIKSPRQGAQTIVY 394
+ + + ++
Sbjct: 219 RNI-----TQEEVGNLGLF 232
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 80.7 bits (198), Expect = 7e-18
Identities = 35/230 (15%), Positives = 79/230 (34%), Gaps = 30/230 (13%)
Query: 142 GKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK ++VTG I IA+ + + A++ ++ + + ++ + +
Sbjct: 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE---FAAQLGSDIVLQ 61
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
CD+A SI E+ K K + +++ G + ++ + + + H + +
Sbjct: 62 CDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISS- 120
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
YS + + S ++ +S + +R N
Sbjct: 121 ------------YSFVAMAKACRSMLNPGSALLTLSYLGAERAIPN------------YN 156
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369
+K + R +A + G+ VNA+ G + T + L
Sbjct: 157 VMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKML 206
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 80.7 bits (198), Expect = 8e-18
Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 45/228 (19%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
I++++G TGIG A + L +++ + DL
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADL 42
Query: 203 ASQESIR-AFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
++ E + A A+ + K +K ++ L+ AG+ + + + VN+ G L
Sbjct: 43 STAEGRKQAIADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAF 97
Query: 262 LDKLQA---------NLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
L L+ + + + ++ G
Sbjct: 98 LPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAG---------- 147
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
AY SK A + R+ A G+ +N + PG T +L+
Sbjct: 148 -EQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQ 194
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 65.8 bits (159), Expect = 1e-12
Identities = 43/249 (17%), Positives = 65/249 (26%), Gaps = 27/249 (10%)
Query: 144 IVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNK--------- 193
+ +VTGA +G++IA L V + R + + N
Sbjct: 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63
Query: 194 -------YVLCRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQ 246
+ + +VL+NNA E
Sbjct: 64 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNAS--SFYPTPLLRNDEDG 121
Query: 247 LGVNHMGHFLLTMLLLDKLQANL-SRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTIN 305
+ D +N + Y L + V A R N S + N
Sbjct: 122 HEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTN 181
Query: 306 KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365
Y +K A TR A L I VN V PG+ + +
Sbjct: 182 -------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVW 234
Query: 366 DSWLSTVVL 374
+ S V L
Sbjct: 235 EGHRSKVPL 243
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 63.9 bits (154), Expect = 5e-12
Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 32/255 (12%)
Query: 142 GKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK ++ G N I IA+ + A + + ++ R + + +
Sbjct: 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP---IAQELNSPYVYE 61
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
D++ +E ++ VKK+ ++ ++++ + G L T
Sbjct: 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKE--------------ALEGSLLETS 107
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+S YSL L + + ++ +S +
Sbjct: 108 KSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST------------KYMAHYN 155
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
+K A R LA L I VNA+ G + T + + L + +
Sbjct: 156 VMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLR 215
Query: 380 LFIKSPRQGAQTIVY 394
+ + +Y
Sbjct: 216 KNVS-LEEVGNAGMY 229
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 62.2 bits (149), Expect = 2e-11
Identities = 29/292 (9%), Positives = 78/292 (26%), Gaps = 13/292 (4%)
Query: 142 GKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
I + G G G IA+EL+KR K+I + + N ++ +
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61
Query: 200 CDLASQESI-------RAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHM 252
+ + + A + + +N K ++ N + ++ ++ ++ + V+ +
Sbjct: 62 KKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSL 121
Query: 253 GHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSE 312
+ L +L + + I+ S + +
Sbjct: 122 ANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPG 181
Query: 313 NSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372
+ A + + L + I +N + G + + + ++
Sbjct: 182 YGGGMSSAKAALESDTRVLAYHLGRN---YNIRINTISAGPLKSRAATAINKLNNTYENN 238
Query: 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD-GRF 423
+ + S + E +
Sbjct: 239 TNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQK 290
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.5 bits (145), Expect = 3e-11
Identities = 20/214 (9%), Positives = 53/214 (24%), Gaps = 31/214 (14%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
++ ++ G +GK +A LA ++++ R +K E E
Sbjct: 2 RVALLGGT-GNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE--YRRIAGDASITGMKN 58
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
A I+ + + + +++ +
Sbjct: 59 EDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFT---------- 108
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
S I V + ++ A K D ++
Sbjct: 109 ------YSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFD------------WD 150
Query: 323 QSKLANVLFTRELAKRLEGTGITVNAVHPGIVNT 356
+ ++++ L + + G ++
Sbjct: 151 VPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSN 184
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 57.7 bits (138), Expect = 5e-10
Identities = 31/254 (12%), Positives = 58/254 (22%), Gaps = 42/254 (16%)
Query: 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201
V+VTG G+G IAR LA+R A ++ E+V E +
Sbjct: 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 68
Query: 202 LASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLL 261
+ + + +A + + E +
Sbjct: 69 CDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVL------ 122
Query: 262 LDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAY 321
+ + +E + + SS A G Y
Sbjct: 123 -------------GARNLHELTRELDLTAFVLFSSFASAFG------------APGLGGY 157
Query: 322 NQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLF 381
++ G+ AV G + D + +
Sbjct: 158 APGNAYLDGLAQQRRSD----GLPATAVAWGTWAGSGMAEGPVAD-RFRRHGVIEM---- 208
Query: 382 IKSPRQGAQTIVYA 395
P + + A
Sbjct: 209 --PPETACRALQNA 220
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 57.1 bits (136), Expect = 8e-10
Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 29/221 (13%)
Query: 142 GKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRK 199
GK ++V+G ++ I IAR ++ A++++ D + + + L +K +
Sbjct: 6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD-RLPAKAPLLELDV 64
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
+ S+ E K++ ++++ G M + G +
Sbjct: 65 QNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAY 124
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
+A L + I F S N +VA + E
Sbjct: 125 SYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKY--- 181
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILR 360
G+ N V G + T +
Sbjct: 182 -----------------------GVRSNLVAAGPIRTLAMS 199
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 54.8 bits (130), Expect = 6e-09
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 4/119 (3%)
Query: 141 RGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACR--DLDKCEKARKEVVLESKNKYVL 196
RGK + G + G G A+A+ LA A++++ L+ E + + +
Sbjct: 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPD 66
Query: 197 CRKCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHF 255
++ + A + + + + AG S E + G +
Sbjct: 67 GSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVH 125
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 52.1 bits (123), Expect = 5e-08
Identities = 17/78 (21%), Positives = 29/78 (37%)
Query: 132 AKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK 191
AK G +V+VTGAN + + +L + KV R K +K +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 192 NKYVLCRKCDLASQESIR 209
++ D+ Q +
Sbjct: 61 GRFETAVVEDMLKQGAYD 78
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 49.5 bits (117), Expect = 1e-07
Identities = 22/204 (10%), Positives = 45/204 (22%), Gaps = 42/204 (20%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK +V +G A LA A+V++ R LDK + A V K
Sbjct: 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA 81
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTML 260
D + K + + + ++L + + + + + +
Sbjct: 82 D----------DASRAEAVKGAHFVFTAGAIGL--ELLPQAAWQNESSIEIVADYNAQPP 129
Query: 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQA 320
L + + G
Sbjct: 130 LGIGGIDATDK-----------------GKEYGGKRAFGALGI-------------GGLK 159
Query: 321 YNQSKLANVLFTRELAKRLEGTGI 344
+ + I
Sbjct: 160 LKLHRACIAKLFESSEGVFDAEEI 183
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 47.4 bits (112), Expect = 2e-06
Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 15/210 (7%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
+++TG IG A+ R + K ++ L + N+Y D+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNF-EHADICD 61
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDK 264
I E+ + + +++ A S + + N +G T LL+
Sbjct: 62 SAEITRIFEQY-----QPDAVMHLAAESHVDRS--ITGPAAFIETNIVG----TYALLEV 110
Query: 265 LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQS 324
+ S + S ++ ++ +Y P+ Y+ S
Sbjct: 111 ARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSAS 170
Query: 325 KLANVLFTRELAKRLEGTGITVNAVHPGIV 354
K ++ R + G+ +
Sbjct: 171 KASSDHLVRAWRRT---YGLPTIVTNCSNN 197
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 9e-06
Identities = 35/255 (13%), Positives = 74/255 (29%), Gaps = 43/255 (16%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE---SKNKYVLCRK 199
K+ ++TG G +A L ++ +V R R + + + + N
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 200 CDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTM 259
DL+ ++ E + + + N +S E E V+ MG T+
Sbjct: 62 GDLSDTSNLTRILRE-----VQPDEVYNLGAMSHVAVSF--ESPEYTADVDAMG----TL 110
Query: 260 LLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQ 319
LL+ ++ +R S+ G + + + P
Sbjct: 111 RLLEAIRF---------------LGLEKKTRFYQASTSE-LYGLVQEIPQKETTPFYPRS 154
Query: 320 AYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379
Y +KL T + + ++ + +
Sbjct: 155 PYAVAKLYAYWITVNYRESYG-------------MYACNGILFNHESPRRGETFVTRKIT 201
Query: 380 LFIKSPRQGAQTIVY 394
I + QG ++ +Y
Sbjct: 202 RAIANIAQGLESCLY 216
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 31/199 (15%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCR---- 198
+ ++TG G +A L ++ +V R R E + ++ ++
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 199 KCDLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLT 258
DL + EVK ++ +S T + V+ +G L
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTAD-------VDGVGTLRLL 114
Query: 259 MLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPT 318
+ L N + + S+ + G + + + P
Sbjct: 115 DAVK--------TCGLINSV-----------KFYQAST-SELYGKVQEIPQKETTPFYPR 154
Query: 319 QAYNQSKLANVLFTRELAK 337
Y +KL +
Sbjct: 155 SPYGAAKLYAYWIVVNFRE 173
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 42.3 bits (98), Expect = 8e-05
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K + V GA G ++ R A V L + E + N V + L
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL---KGLIAEELQAIPN--VTLFQGPL 58
Query: 203 ASQESIRAFA 212
+ +
Sbjct: 59 LNNVPLMDTL 68
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 41.7 bits (96), Expect = 9e-05
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V++ G IGK I + R + +++L K + L
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 205 QESIRAF 211
+ +
Sbjct: 66 HQRLVDA 72
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 8/69 (11%), Positives = 16/69 (23%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K + + GA G + + +V + RD + + D
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDK 63
Query: 203 ASQESIRAF 211
Sbjct: 64 TVAGQDAVI 72
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS 204
V+VTG + IG +L + VI +L +++ V+ K+ + D+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 205 QESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDK 264
+ + + I+ +I+ AG+ + + +K N G L+
Sbjct: 62 EALMTEI-----LHDHAIDTVIHFAGLKAVGE--SVQKPLEYYDNNVNGTL---RLISAM 111
Query: 265 LQANLSRYSLCNLIWYY 281
AN+ + + Y
Sbjct: 112 RAANVKNFIFSSSATVY 128
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 27/195 (13%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
KIV+VTG IG EL + + +L + ++ + DL
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCV-VADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
++ + + KI+ +I+ AG+ + + N +G +L L+
Sbjct: 61 CDRKGLEKV-----FKEYKIDSVIHFAGLKAVGES--TQIPLRYYHNNILGTVVLLELM- 112
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
Q N+S++ + Y P N + E PT Y
Sbjct: 113 --QQYNVSKFVFSSSATVYGDATRFP----------------NMIPIPEECPLGPTNPYG 154
Query: 323 QSKLANVLFTRELAK 337
+K A +L
Sbjct: 155 HTKYAIENILNDLYN 169
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 22/195 (11%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K +IVTG IG + V + D K + V D+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD-KLTYAGNKANLEAILGDRVELVVGDI 61
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
A E + +++ + I + + N +G T LL
Sbjct: 62 ADAELV----DKLAAKADAIVHYAAESHNDNS-----LNDPSPFIHTNFIG----TYTLL 108
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYN 322
+ + R+ + Y + + G E +E +Y+P+ Y+
Sbjct: 109 EAARKYDIRFHHVSTDEVY--------GDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160
Query: 323 QSKLANVLFTRELAK 337
+K A+ L + +
Sbjct: 161 STKAASDLIVKAWVR 175
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 38.2 bits (87), Expect = 0.001
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCD 201
+++ GA IG+ +A+ + R+ + K +LES K
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63
Query: 202 L 202
+
Sbjct: 64 I 64
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 0.002
Identities = 27/216 (12%), Positives = 64/216 (29%), Gaps = 47/216 (21%)
Query: 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDL 202
K +++TG +G + +L +V + +D RK V ++ +L
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTV----VDNFFTGRKRNV----EHWIGHENFEL 53
Query: 203 ASQESIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLL 262
+ + V+ +++ + + A + L N +G T+ +L
Sbjct: 54 INHDV-------VEPLYIEVDQIYHLASPASPPNY--MYNPIKTLKTNTIG----TLNML 100
Query: 263 DKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA----HKRGTINKEDLNSENSYDPT 318
+ +R++ S+ + +++ N P
Sbjct: 101 GLAKRV-------------------GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPR 141
Query: 319 QAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIV 354
Y++ K K+ G+ V
Sbjct: 142 ACYDEGKRVAETMCYAYMKQ---EGVEVRVARIFNT 174
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 37.5 bits (85), Expect = 0.002
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Query: 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKC 200
+GK V VTG G ++ L A V + + +
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSE---IG 63
Query: 201 DLASQESIRAFAEEVKKENKKINVLINNAGVSGCRKM 237
D+ Q + E + E +S +
Sbjct: 64 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPV 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.96 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.82 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.78 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.74 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.71 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.71 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.7 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.68 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.67 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.66 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.66 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.66 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.65 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.64 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 99.63 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.63 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 99.6 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.6 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.59 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.59 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.58 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 99.58 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 99.57 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.57 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.57 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.55 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.55 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.51 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.46 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.24 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.2 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.19 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.17 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 99.15 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.98 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.94 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.92 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.85 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 98.69 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 98.39 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.39 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.33 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 98.24 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.91 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.79 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 97.77 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.73 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.7 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.67 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.65 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.62 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.59 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.5 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.5 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.42 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.36 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.25 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.24 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.2 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.16 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.04 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.04 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.95 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 96.92 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.92 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 96.89 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.84 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.71 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.69 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.68 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.68 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.65 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.63 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.63 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.57 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.48 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.46 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.43 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.4 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.39 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.39 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.33 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.32 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.27 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.21 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.2 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.16 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.16 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.15 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.15 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.12 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.06 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.02 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.01 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.96 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.95 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.93 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.91 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.86 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.84 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.8 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.7 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.7 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.7 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 95.66 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.65 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.51 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.48 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.47 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.47 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.28 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.89 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 94.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.78 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.49 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.09 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 94.05 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.01 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.99 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 93.91 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 93.83 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.8 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.75 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 93.5 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 93.43 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.43 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.25 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.18 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 93.13 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.03 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.91 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.8 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 92.8 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.77 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 92.67 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.64 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.6 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 92.6 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 92.58 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.48 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.44 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.35 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 92.32 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 92.31 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.28 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.28 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 92.17 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.96 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.7 | |
| d2ysca1 | 26 | Amyloid beta A4 precursor protein-binding family B | 91.44 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 91.08 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.01 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 90.8 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 90.78 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.77 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.65 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.62 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.61 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.54 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 90.37 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 90.22 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.05 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 89.98 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 89.97 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 89.9 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 89.54 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 89.49 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 89.49 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 89.47 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 89.24 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.21 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.08 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 89.02 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 89.01 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 88.92 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 88.9 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 88.83 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 88.7 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.7 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 88.57 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.26 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 87.79 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.72 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 87.54 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.51 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 87.48 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 87.05 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 86.87 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 86.85 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 86.63 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 86.45 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 86.38 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.28 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 86.24 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 86.01 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 85.95 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 85.13 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 84.98 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 84.95 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 84.9 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 84.74 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 84.67 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 84.51 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 84.34 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 84.3 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.24 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 84.16 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.93 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 83.57 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 83.48 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 83.15 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 83.11 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 83.06 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 82.68 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 82.54 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 82.52 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.82 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 81.62 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.07 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 80.95 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 80.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 80.5 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 80.46 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.23 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 80.07 |
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.4e-51 Score=388.11 Aligned_cols=245 Identities=26% Similarity=0.370 Sum_probs=219.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||+||||||++|||+++|++|+++|++|++++|+.++++++.++++... .++..+++|++|+++++++++++.
T Consensus 5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999986643 368899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||..... .+.+.++|++++++|+.++++++++++|+|+ +++.|+||++
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~IVni 144 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMI------------------NNRYGRIINI 144 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HHTCEEEEEE
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccc------------------cCCCeEEEEE
Confidence 9999999999999986543 6678899999999999999999999999998 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+|+||.|++++|||||+|+||+|+|+|.+... +...+.+.
T Consensus 145 sS~~~~~~~------------~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~---~~~~~~~~ 209 (251)
T d2c07a1 145 SSIVGLTGN------------VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKIS---EQIKKNII 209 (251)
T ss_dssp CCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CC---HHHHHHHH
T ss_pred CCHHhcCCC------------CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccC---HHHHHHHH
Confidence 999998875 668899999999999999999999999999999999999999987764 44556667
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||++|
T Consensus 210 ~~~pl~R~~~pedvA~~v~fL~S~-~s~~itG~~i~vDGG~sp 251 (251)
T d2c07a1 210 SNIPAGRMGTPEEVANLACFLSSD-KSGYINGRVFVIDGGLSP 251 (251)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSCC
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-hhCCCcCcEEEECCCcCc
Confidence 778889999999999999999965 588999999999999875
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=1.1e-51 Score=390.20 Aligned_cols=249 Identities=21% Similarity=0.279 Sum_probs=223.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.....+.++.+++||++|+++++++++++.++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999888777778999999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+|+||+||||||+..+ ..+.+.++|+++|++|+.|+|+++++++|+|+ +++.|+||++|
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~~G~Ii~is 142 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMR------------------EQGSGMVVNTA 142 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEEC
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhh------------------hhcCCCCcccc
Confidence 9999999999997643 25679999999999999999999999999998 55789999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-----CCchhHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-----YYDSWLS 370 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-----~~~~~~~ 370 (429)
|.++..+. +...+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+... .......
T Consensus 143 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~ 210 (258)
T d1iy8a_ 143 SVGGIRGI------------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAA 210 (258)
T ss_dssp CGGGTSBC------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHH
T ss_pred cHhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHH
Confidence 99998775 678999999999999999999999999999999999999999875431 1223344
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+.+...+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||++.+
T Consensus 211 ~~~~~~~pl~R~~~p~dvA~~v~fL~S~-~s~~itG~~i~VDGG~saa 257 (258)
T d1iy8a_ 211 EEFIQVNPSKRYGEAPEIAAVVAFLLSD-DASYVNATVVPIDGGQSAA 257 (258)
T ss_dssp HHHHTTCTTCSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTTTTB
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCceEEcCcchhcc
Confidence 4556677889999999999999999965 5899999999999998753
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-51 Score=385.79 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=222.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.++++... .++.+++||++++++++++++++.
T Consensus 6 ~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999997654 368889999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 217 KENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+++|+||+||||||+..+. .+.+.++|++++++|+.|++++++.++|+|. +++.|+||++|
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~g~Ii~is 145 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEME------------------KNGGGVILTIT 145 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhc------------------ccccccccccc
Confidence 9999999999999987543 5678999999999999999999999999998 55678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++.+... .++..+.+..
T Consensus 146 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~e~~~~~~~ 211 (255)
T d1fmca_ 146 SMAAENKN------------INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQ 211 (255)
T ss_dssp CGGGTCCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHH
T ss_pred ccchhccc------------cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccC--CHHHHHHHHh
Confidence 99988775 678899999999999999999999999999999999999999987654 2445556677
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+|.+|+.+|+|+|++++||+++ +++++||+.|.+|||+.
T Consensus 212 ~~pl~R~g~pedvA~~v~fL~S~-~s~~itG~~i~vDGG~~ 251 (255)
T d1fmca_ 212 HTPIRRLGQPQDIANAALFLCSP-AASWVSGQILTVSGGGV 251 (255)
T ss_dssp TCSSCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCEEEECcCcc
Confidence 78889999999999999999964 58999999999999973
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-51 Score=382.70 Aligned_cols=240 Identities=25% Similarity=0.342 Sum_probs=217.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
||+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .+...+++|++++++++++++++.++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 6899999999999999999999999999999999999999998888773 25678899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||..... .+.+.++|++++++|+.+++++++.++|+|+ +++.|+||++||
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~II~isS 137 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMM------------------KKRHGRIITIGS 137 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHH------------------HcCCCEeeeecc
Confidence 99999999999987544 6789999999999999999999999999998 456799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+++||.|++++|||||+|+||+|+|+|.+... +.....+...
T Consensus 138 ~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~---~~~~~~~~~~ 202 (243)
T d1q7ba_ 138 VVGTMGN------------GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALS---DDQRAGILAQ 202 (243)
T ss_dssp HHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC---HHHHHHHHTT
T ss_pred hhhcCCC------------CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhh---hhHHHHHHhc
Confidence 9998875 668899999999999999999999999999999999999999987764 2334456667
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||+..
T Consensus 203 ~pl~R~~~pedvA~~v~fL~S~-~s~~itGq~i~vdGG~~~ 242 (243)
T d1q7ba_ 203 VPAGRLGGAQEIANAVAFLASD-EAAYITGETLHVNGGMYM 242 (243)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTSSC
T ss_pred CCCCCCCCHHHHHHHHHHHhCc-hhcCCcCCeEEECCCeEe
Confidence 8889999999999999999964 588999999999999764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.4e-51 Score=383.51 Aligned_cols=248 Identities=24% Similarity=0.350 Sum_probs=220.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.++++|++++++++++++++.+
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999888876654 4688899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||+||||||+.... .+++.++|++.+++|+.++|++++.++|+|+ +++.|+||+++
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLR------------------ESDNPSIINIG 141 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TCSSCEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccc------------------ccccccccccc
Confidence 999999999999986443 6789999999999999999999999999998 66789999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|..+.... .++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+.... .++..+.+..
T Consensus 142 S~~~~~~~-----------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~ 209 (251)
T d1vl8a_ 142 SLTVEEVT-----------MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-DPEKLDYMLK 209 (251)
T ss_dssp CGGGTCCC-----------SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-CHHHHHHHHH
T ss_pred cchhcccc-----------CccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC-CHHHHHHHHh
Confidence 97764422 15578999999999999999999999999999999999999999875432 2334455667
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+|++|+.+|+|+|++++||+++ +++++||+.|.+|||++.
T Consensus 210 ~~pl~R~~~pedvA~~v~fL~S~-~a~~itG~~i~vDGG~ta 250 (251)
T d1vl8a_ 210 RIPLGRTGVPEDLKGVAVFLASE-EAKYVTGQIIFVDGGWTA 250 (251)
T ss_dssp TCTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred cCCCCCCCCHHHHHHHHHHHhCc-hhCCCcCcEEEeCcCeeC
Confidence 78889999999999999999965 589999999999999875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=1.9e-50 Score=382.05 Aligned_cols=250 Identities=23% Similarity=0.277 Sum_probs=222.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... .++.+++||++|+++++++++++.
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999987654 478889999999999999999999
Q ss_pred HhCC-CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 217 KENK-KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 217 ~~~g-~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++++ ++|+||||||+.... .+.+.++|++++++|+.++|++++.++|+|+ +++.|+||+
T Consensus 81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~Ii~ 142 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLK------------------ASERGNVVF 142 (259)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTSSEEEEE
T ss_pred HHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhh------------------hhccccccc
Confidence 9987 899999999986543 6789999999999999999999999999998 567899999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC--chhHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY--DSWLST 371 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~--~~~~~~ 371 (429)
+||.++..+. ++..+|++||+|+++|+|+||.|++++|||||+|+||+|+|+|.+..... .++..+
T Consensus 143 isS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~ 210 (259)
T d2ae2a_ 143 ISSVSGALAV------------PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLN 210 (259)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHH
T ss_pred cccccccccc------------ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHH
Confidence 9999998765 67889999999999999999999999999999999999999997654321 122334
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+...+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||+..+.
T Consensus 211 ~~~~~~pl~R~g~pedvA~~v~fL~S~-~s~~itG~~i~VDGG~~a~~ 257 (259)
T d2ae2a_ 211 KLIDRCALRRMGEPKELAAMVAFLCFP-AASYVTGQIIYVDGGLMANC 257 (259)
T ss_dssp HHHHTSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCS
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCc-hhCCCcCcEEEECCCeEeeC
Confidence 455678889999999999999999965 58899999999999987653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.4e-51 Score=385.23 Aligned_cols=251 Identities=22% Similarity=0.239 Sum_probs=198.3
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+.++|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++..... ++..+.||++++++++++++++
T Consensus 2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999876543 7899999999999999999999
Q ss_pred HHhC-CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 216 KKEN-KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 216 ~~~~-g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.+++ |+||+||||||+.... .+.+.++|++++++|+.|++++++.++|+|+ +++.|+||
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~~G~Iv 141 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLK------------------ASGCGNII 141 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHSSCEEE
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccc------------------cccccccc
Confidence 9997 7899999999986543 6789999999999999999999999999998 45679999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
++||.++..+. ++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+.... ++..+.
T Consensus 142 ~isS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~--~~~~~~ 207 (259)
T d1xq1a_ 142 FMSSIAGVVSA------------SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD--DEFKKV 207 (259)
T ss_dssp EEC----------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------
T ss_pred ccccccccccc------------cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhch--HHHHHH
Confidence 99999988765 5678999999999999999999999999999999999999999876542 233444
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
+....|++|+.+|+|+|++++||+++ +++++||+.|.+|||++.+...
T Consensus 208 ~~~~~pl~R~~~pedvA~~v~fL~S~-~s~~iTG~~i~vDGG~s~~g~~ 255 (259)
T d1xq1a_ 208 VISRKPLGRFGEPEEVSSLVAFLCMP-AASYITGQTICVDGGLTVNGFS 255 (259)
T ss_dssp ----------CCGGGGHHHHHHHTSG-GGTTCCSCEEECCCCEEETTEE
T ss_pred HHhCCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCcEEEeCCCEECCCCC
Confidence 56678889999999999999999965 5899999999999999887553
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.9e-50 Score=382.46 Aligned_cols=246 Identities=26% Similarity=0.367 Sum_probs=210.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|+||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++....+ .++.++++|++|+++++++++++.++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999997 5667777777766544 47889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||+.... .+.+.++|+++|++|+.|+++++++++|+|+ +++.|+||++||
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~~G~Iv~isS 142 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMK------------------KQGFGRIINIAS 142 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHh------------------hcCCceEeeccc
Confidence 99999999999987544 6789999999999999999999999999998 556799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---------Cch
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---------YDS 367 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---------~~~ 367 (429)
.++..+. ++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+.... ...
T Consensus 143 ~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~ 210 (260)
T d1x1ta1 143 AHGLVAS------------ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQET 210 (260)
T ss_dssp GGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------
T ss_pred ccceecc------------CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHH
Confidence 9998875 6788999999999999999999999999999999999999999765421 111
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+.+...+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||++.
T Consensus 211 ~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~-~a~~itG~~i~vDGG~ta 259 (260)
T d1x1ta1 211 AARELLSEKQPSLQFVTPEQLGGTAVFLASD-AAAQITGTTVSVDGGWTA 259 (260)
T ss_dssp ----CHHHHCTTCCCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCh-hhCCCcCCEEEECcchhc
Confidence 2223345677889999999999999999965 589999999999999865
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=5.7e-50 Score=379.00 Aligned_cols=250 Identities=25% Similarity=0.286 Sum_probs=219.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh-hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL-DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.+|+||++|||||++|||+++|++|+++|++|++++|+. +.+++..++++... .++..++||++|+++++++++++.
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999985 45677777776543 378899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||+..+. .+.+.++|++++++|+.|+++++++++|+|.+ ++.+++||++
T Consensus 81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----------------~~~g~~Iv~i 143 (261)
T d1geea_ 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVE-----------------NDIKGTVINM 143 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------TTCCCEEEEE
T ss_pred HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcc-----------------cccccccccc
Confidence 9999999999999987543 67899999999999999999999999999984 3345679999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. +...+|++||+|+.+|+++||.|++++|||||+|+||+|+|++...... .++....+.
T Consensus 144 sS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~-~~~~~~~~~ 210 (261)
T d1geea_ 144 SSVHEKIPW------------PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA-DPEQRADVE 210 (261)
T ss_dssp CCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH-SHHHHHHHH
T ss_pred ccchhcccC------------ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcC-CHHHHHHHH
Confidence 999988765 6688999999999999999999999999999999999999999765422 233445566
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
..+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||+++.+.
T Consensus 211 ~~~pl~R~~~pediA~~v~fL~S~-~s~~itG~~i~vDGG~sl~p~ 255 (261)
T d1geea_ 211 SMIPMGYIGEPEEIAAVAAWLASS-EASYVTGITLFADGGMTLYPS 255 (261)
T ss_dssp TTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCGG
T ss_pred hcCCCCCCCCHHHHHHHHHHHhCc-hhcCCcCCeEEECCCeeCCCC
Confidence 678889999999999999999965 588999999999999988654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.5e-50 Score=373.46 Aligned_cols=238 Identities=22% Similarity=0.234 Sum_probs=212.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ ...+++||++|+++++++++++.+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999988876654 345789999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||+||||||+..+. .+.+.++|++++++|+.|+++++++++|+|. +++.++|+++|
T Consensus 74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~~~i~~~s 135 (242)
T d1ulsa_ 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMR------------------EKNPGSIVLTA 135 (242)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------------TTCCEEEEEEC
T ss_pred hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccc------------------ccccceeeeec
Confidence 999999999999987543 6789999999999999999999999999997 56777888877
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|. +..+. ++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+... +...+.+..
T Consensus 136 s~-~~~~~------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~---~~~~~~~~~ 199 (242)
T d1ulsa_ 136 SR-VYLGN------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP---EKVREKAIA 199 (242)
T ss_dssp CG-GGGCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC---HHHHHHHHH
T ss_pred cc-cccCC------------CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCC---HHHHHHHHh
Confidence 74 44443 668899999999999999999999999999999999999999987764 445556677
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++.
T Consensus 200 ~~pl~R~~~pedia~~v~fL~S~-~s~~itG~~i~vDGG~t~ 240 (242)
T d1ulsa_ 200 ATPLGRAGKPLEVAYAALFLLSD-ESSFITGQVLFVDGGRTI 240 (242)
T ss_dssp TCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTT
T ss_pred cCCCCCCCCHHHHHHHHHHHhch-hhCCCCCcEEEECCCccC
Confidence 78889999999999999999965 588999999999999875
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=4.8e-50 Score=379.05 Aligned_cols=245 Identities=28% Similarity=0.319 Sum_probs=217.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... .++.++++|++|+++++++++++.+++|
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999999987654 3788999999999999999999999999
Q ss_pred CeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcc
Q psy12836 221 KINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVA 298 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~ 298 (429)
+||+||||||+.... .+++.++|+++|++|+.|+++++++++|+|... +++.|+||++||.+
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~----------------~~~~g~Ii~i~S~~ 142 (257)
T d2rhca1 79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGML----------------ERGTGRIVNIASTG 142 (257)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHH----------------HHTEEEEEEECCGG
T ss_pred CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHH----------------hcCCcccccccccc
Confidence 999999999987544 678999999999999999999999999974211 44668999999999
Q ss_pred cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCchhHH
Q psy12836 299 HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDSWLS 370 (429)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~~~~ 370 (429)
+..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.+... ...++..
T Consensus 143 ~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~ 210 (257)
T d2rhca1 143 GKQGV------------VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAF 210 (257)
T ss_dssp GTSCC------------TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccc------------ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHH
Confidence 98875 678899999999999999999999999999999999999999875431 1234445
Q ss_pred HHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 371 TVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 371 ~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+.+...+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||..
T Consensus 211 ~~~~~~~PlgR~~~pedia~~v~fL~S~-~s~~itG~~i~vDGG~~ 255 (257)
T d2rhca1 211 DRITARVPIGRYVQPSEVAEMVAYLIGP-GAAAVTAQALNVCGGLG 255 (257)
T ss_dssp HHHHTTSTTSSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTCC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCceEEECcCcc
Confidence 5566778899999999999999999965 58899999999999964
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=8.8e-50 Score=376.95 Aligned_cols=246 Identities=20% Similarity=0.265 Sum_probs=217.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++ +.++.+++||++++++++++++++.+
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999998888776 23678899999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||+||||||+.... .+.+.++|++.+++|+.|++++++.++|.|.+ ++..|+||++|
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~-----------------~~~~g~Iv~is 138 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIA-----------------GGRGGKIINMA 138 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEEEC
T ss_pred HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHH-----------------hccCCcccccc
Confidence 999999999999986543 67799999999999999999999999998763 34579999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCch
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDS 367 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~ 367 (429)
|.++..+. +...+|++||+|+.+|+++||.|++++|||||+|+||+++|++.+... ...+
T Consensus 139 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~ 206 (256)
T d1k2wa_ 139 SQAGRRGE------------ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRG 206 (256)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTT
T ss_pred chhhcccc------------ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChH
Confidence 99998775 678999999999999999999999999999999999999999865331 1223
Q ss_pred hHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 368 WLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
+..+.+...+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||..++
T Consensus 207 ~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~-~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 207 EKKRQVGAAVPFGRMGRAEDLTGMAIFLATP-EADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp HHHHHHHHHSTTSSCBCHHHHHHHHHHTTSG-GGTTCCSCEEEESTTSSCC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhCCccCceEEECcchhhC
Confidence 4445566778889999999999999999965 5899999999999997653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=7.3e-50 Score=374.71 Aligned_cols=239 Identities=24% Similarity=0.338 Sum_probs=215.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++||||||++|||+++|++|+++|++|++.+ |+.+.++++.++++... .++.++++|++|+++++++++++.+++|+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999999999875 67778888888886554 37889999999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
||+||||||..... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||++||.++
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~IVnisS~~~ 141 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMM------------------KKRKGRIINIASVVG 141 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCTHH
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHH------------------HcCCcEEEEEcChhh
Confidence 99999999987543 6789999999999999999999999999998 456799999999999
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVW 379 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+++|+|.+... +...+.+....|.
T Consensus 142 ~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~---~~~~~~~~~~~pl 206 (244)
T d1edoa_ 142 LIGN------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG---EDMEKKILGTIPL 206 (244)
T ss_dssp HHCC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---HHHHHHHHTSCTT
T ss_pred cCCC------------CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhh---HHHHHHHHhcCCC
Confidence 8875 668899999999999999999999999999999999999999988764 3444556677888
Q ss_pred hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 380 LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 380 ~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+|+.+|+|+|++++||+.++++.++||+.|.+|||++
T Consensus 207 ~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~s 243 (244)
T d1edoa_ 207 GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCee
Confidence 9999999999999999866778999999999999976
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=6.8e-50 Score=378.58 Aligned_cols=243 Identities=23% Similarity=0.273 Sum_probs=217.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.... .++..++||++|+++++++++++.++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999886654 47889999999999999999999999
Q ss_pred CCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
+|+||+||||||.... ..+.+.++|++++++|+.++++++++++|+|. +++.|+||++|
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~------------------~~~~G~II~is 141 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMI------------------TQNYGRIVNTA 141 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEC
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhh------------------hhcCCCCCeee
Confidence 9999999999997643 36789999999999999999999999999998 45779999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC-------------
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS------------- 362 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~------------- 362 (429)
|.++..+. +...+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|....
T Consensus 142 S~~~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~ 209 (260)
T d1zema1 142 SMAGVKGP------------PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYF 209 (260)
T ss_dssp CHHHHSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTS
T ss_pred chhhccCC------------cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhccccc
Confidence 99998875 66889999999999999999999999999999999999999985321
Q ss_pred CCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 363 SYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
....+...+.+...+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||
T Consensus 210 ~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~-~s~~itG~~i~VDGG 260 (260)
T d1zema1 210 STDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGD-DSSFMTGVNLPIAGG 260 (260)
T ss_dssp CSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSG-GGTTCCSCEEEESCC
T ss_pred ccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCccCCeEEeCCC
Confidence 112233445566778889999999999999999965 589999999999997
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.7e-50 Score=373.81 Aligned_cols=235 Identities=23% Similarity=0.292 Sum_probs=212.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .++.+++||++|+++++++++++.++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999988888763 35778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||..... .+.+.++|+++|++|+.|+|++++.+.|+|+ +++.|+||++||
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~Ii~isS 139 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMK------------------EAGRGSIINISS 139 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHH------------------hcCcceEEeccc
Confidence 99999999999986543 6789999999999999999999999999998 456799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+++|+|+||.|++++|||||+|+||+|+|+|.+..... ...
T Consensus 140 ~~~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~--------~~~ 199 (244)
T d1nffa_ 140 IEGLAGT------------VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED--------IFQ 199 (244)
T ss_dssp GGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTT--------CSC
T ss_pred ccccccc------------ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHH--------HHh
Confidence 9998775 66889999999999999999999999999999999999999998765421 223
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.|++|+.+|+|+|++++||+++ ++.++||+.|.+|||+..
T Consensus 200 ~pl~R~~~p~diA~~v~fL~s~-~s~~itG~~i~vDGG~~a 239 (244)
T d1nffa_ 200 TALGRAAEPVEVSNLVVYLASD-ESSYSTGAEFVVDGGTVA 239 (244)
T ss_dssp CSSSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred ccccCCCCHHHHHHHHHHHhCh-hhCCCcCCEEEECCCeec
Confidence 5678899999999999999964 588999999999999875
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=5e-50 Score=377.64 Aligned_cols=244 Identities=22% Similarity=0.256 Sum_probs=215.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.+++||++++++++++++++.++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEcccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888776652 36889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||+.... .+.+.++|++++++|+.|+++++++++|+|+ +++.|+||++||
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~------------------~~~~G~II~isS 138 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMK------------------DAGGGSIVNISS 138 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHh------------------hcCCCeeccccc
Confidence 99999999999987544 6789999999999999999999999999998 456799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|........ .+.....
T Consensus 139 ~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~---~~~~~~~ 203 (254)
T d1hdca_ 139 AAGLMGL------------ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQ---GEGNYPN 203 (254)
T ss_dssp GGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCC---STTSCTT
T ss_pred chhcccc------------cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHH---HHHHHhC
Confidence 9998765 678899999999999999999999999999999999999999976543211 1223345
Q ss_pred HhhhccC-CHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 377 LVWLFIK-SPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 377 ~~~~~~~-~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.|++|+. .|+|+|++++||+++ ++.++||+.|.+|||++..|..
T Consensus 204 ~pl~R~g~~PedvA~~v~fL~S~-~a~~itG~~i~vDGG~t~gp~~ 248 (254)
T d1hdca_ 204 TPMGRVGNEPGEIAGAVVKLLSD-TSSYVTGAELAVDGGWTTGPTV 248 (254)
T ss_dssp STTSSCB-CHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTTSCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHhch-hhCCCCCceEEeCCCccCCCCc
Confidence 6778886 699999999999964 5899999999999999876653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=1.6e-49 Score=374.04 Aligned_cols=243 Identities=27% Similarity=0.323 Sum_probs=215.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.. ..++.+++||++|+++++++++++.++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988888743 236888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC-CcEEEEEc
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA-PSRIINVS 295 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~IV~vS 295 (429)
+|+||+||||||..... .+.+.++|+++|++|+.|+|+++++++|+|+ +++ +|+||++|
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~------------------~~~~gg~Ii~is 141 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMK------------------NKGLGASIINMS 141 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------TSSSCEEEEEEC
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHH------------------hcCCCCceEeee
Confidence 99999999999987543 6789999999999999999999999999998 334 46999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHH--hcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKR--LEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~e--l~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
|.++..+. +...+|++||+|+.+|++++|.| ++++|||||+|+||+|+|+|.+.... ++.....
T Consensus 142 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~ 207 (251)
T d1zk4a1 142 SIEGFVGD------------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAMSQ 207 (251)
T ss_dssp CGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHHTS
T ss_pred ccceeccC------------CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC--HHHHHHH
Confidence 99998765 66889999999999999999999 56899999999999999999877642 2222333
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
...+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||++.
T Consensus 208 ~~~~pl~R~~~pedvA~~v~fL~S~-~s~~itG~~i~vDGG~ta 250 (251)
T d1zk4a1 208 RTKTPMGHIGEPNDIAYICVYLASN-ESKFATGSEFVVDGGYTA 250 (251)
T ss_dssp TTTCTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGG
T ss_pred HhCCCCCCCcCHHHHHHHHHHHhCc-hhCCCcCcEEEECccccc
Confidence 4467888999999999999999965 589999999999999864
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-49 Score=373.79 Aligned_cols=241 Identities=24% Similarity=0.253 Sum_probs=208.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|+||+||||||++|||+++|++|+++|++|++++|+.+..+ ..+++ ...+++||++|+++++++++++.++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-------GGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999987643 33333 2346799999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||+..+. .+.+.++|+++|++|+.|+|+++++++|+|+ +++.|+||++||
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~------------------~~~~G~Ii~isS 135 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMR------------------KVGGGAIVNVAS 135 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------TTTCEEEEEECC
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccc------------------cccccccccccc
Confidence 99999999999987543 6789999999999999999999999999998 667899999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~~ 373 (429)
.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++.+... ...+...+.+
T Consensus 136 ~~~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~ 203 (248)
T d2d1ya1 136 VQGLFAE------------QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDW 203 (248)
T ss_dssp GGGTSBC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHH
T ss_pred ccccccc------------cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHH
Confidence 9998775 678899999999999999999999999999999999999999875431 1112233445
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
....|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++.+
T Consensus 204 ~~~~pl~R~~~pedia~~v~fL~S~-~s~~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 204 EDLHALRRLGKPEEVAEAVLFLASE-KASFITGAILPVDGGMTAS 247 (248)
T ss_dssp HTTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGB
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCc-hhcCCCCcEEEcCcCcccc
Confidence 5667888999999999999999964 5899999999999998754
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=2e-49 Score=372.42 Aligned_cols=242 Identities=25% Similarity=0.316 Sum_probs=199.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++.. .+.++.. +.++.+++||++|+++++++++++.++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~--~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 77 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA--EAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST 77 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH--HHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH--HHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999875432 2333332 347889999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|+||+||||||+.... .+.+.++|+++|++|+.|+++++++++|+|+ +++.|+||++||
T Consensus 78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~G~Iv~isS 139 (247)
T d2ew8a1 78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMK------------------RNGWGRIINLTS 139 (247)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHH------------------hcCCCCcccccc
Confidence 99999999999987543 6789999999999999999999999999998 456799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+.+|+++||.|++++|||||+|+||+|+|++.+...... .........
T Consensus 140 ~~~~~~~------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~-~~~~~~~~~ 206 (247)
T d2ew8a1 140 TTYWLKI------------EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSA-MFDVLPNML 206 (247)
T ss_dssp GGGGSCC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------CTT
T ss_pred chhcccC------------cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccch-hHHHHHHHh
Confidence 9998775 668899999999999999999999999999999999999999987643211 111111112
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.+.+|+.+|+|+|++++||+++ ++.++||+.|.+|||+.
T Consensus 207 ~~l~r~~~pedvA~~v~fL~S~-~s~~itG~~i~vDGG~~ 245 (247)
T d2ew8a1 207 QAIPRLQVPLDLTGAAAFLASD-DASFITGQTLAVDGGMV 245 (247)
T ss_dssp SSSCSCCCTHHHHHHHHHHTSG-GGTTCCSCEEEESSSCC
T ss_pred ccCCCCCCHHHHHHHHHHHhCc-hhcCCcCCeEEECCCEe
Confidence 3557899999999999999965 58999999999999975
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-49 Score=372.16 Aligned_cols=241 Identities=22% Similarity=0.290 Sum_probs=211.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .+.+++||++|+++++++++++.+
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~------~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------GAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC------CCeEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998887776642 467889999999999999999999
Q ss_pred hCCCeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 ENKKINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++|+||+||||||.... ..+.+.++|++++++|+.|+++++++++|+|++ .+|+||++
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~-------------------~~G~Ii~i 136 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK-------------------SQGNVINI 136 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HTCEEEEE
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHh-------------------CCCCCccc
Confidence 99999999999997543 256789999999999999999999999999973 24899999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~ 371 (429)
||.++..+. +...+|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.+.... ......+
T Consensus 137 sS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 204 (250)
T d1ydea1 137 SSLVGAIGQ------------AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIR 204 (250)
T ss_dssp CCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHH
T ss_pred ccccccccc------------cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHH
Confidence 999998775 6688999999999999999999999999999999999999998754321 1122333
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
......|++|+.+|+|+|++++||+++ ++++||+.|.+|||+++
T Consensus 205 ~~~~~~pl~R~g~p~eva~~v~fL~Sd--a~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 205 EGMLAQPLGRMGQPAEVGAAAVFLASE--ANFCTGIELLVTGGAEL 248 (250)
T ss_dssp HHHHTSTTSSCBCHHHHHHHHHHHHHH--CTTCCSCEEEESTTTTS
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCc--cCCCcCCeEEECCCccc
Confidence 344566788999999999999999974 68999999999999875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.8e-49 Score=378.12 Aligned_cols=253 Identities=24% Similarity=0.230 Sum_probs=215.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc-CCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... .+.++.+++||++++++++++++++.+
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999987654 335799999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 218 ENKKINVLINNAGVSGCR------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++|+||+||||||...+. .+.+.++|++++++|+.++++++++++|+|++ + .|++
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~------------------~-~g~i 142 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVA------------------S-KGEI 142 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCEE
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccc------------------c-CCcc
Confidence 999999999999986543 34567789999999999999999999999973 2 3556
Q ss_pred EEEcC-cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH-
Q psy12836 292 INVSS-VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL- 369 (429)
Q Consensus 292 V~vSS-~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~- 369 (429)
|+++| .++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.......+...
T Consensus 143 I~~~Ss~a~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~ 210 (272)
T d1xkqa_ 143 VNVSSIVAGPQAQ------------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQ 210 (272)
T ss_dssp EEECCGGGSSSCC------------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHH
T ss_pred ccccchhccccCC------------CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHH
Confidence 66655 4556554 678899999999999999999999999999999999999999987654322111
Q ss_pred -----HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccc
Q psy12836 370 -----STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 370 -----~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~ 422 (429)
.......+|++|+.+|+|+|++++||++++.+.++||+.|.+|||+++....+
T Consensus 211 ~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l~~g~~ 268 (272)
T d1xkqa_ 211 KFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSLVMGTQ 268 (272)
T ss_dssp HHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCBGGG
T ss_pred HHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHHhcCCC
Confidence 11223356788999999999999999976545789999999999999876444
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.4e-49 Score=375.70 Aligned_cols=248 Identities=22% Similarity=0.265 Sum_probs=207.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++..... ..++.++++|++++++++++++++.+
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999877643 34689999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEE
Q psy12836 218 ENKKINVLINNAGVSGCR------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRI 291 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~I 291 (429)
++|+||+||||||+..+. .+.+.++|++.|++|+.|+++++++++|+|++ + .|++
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~------------------~-~g~i 142 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSS------------------T-KGEI 142 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCEE
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccc------------------c-cCcc
Confidence 999999999999986432 34578999999999999999999999999973 2 3667
Q ss_pred EEEcCcc-cccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCc----
Q psy12836 292 INVSSVA-HKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYD---- 366 (429)
Q Consensus 292 V~vSS~~-~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~---- 366 (429)
|+++|.. +..+. +...+|++||+|+++|+++||.|++++|||||+|+||+|+|+|.+.....+
T Consensus 143 I~~~S~~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~ 210 (264)
T d1spxa_ 143 VNISSIASGLHAT------------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSK 210 (264)
T ss_dssp EEECCTTSSSSCC------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC------------
T ss_pred eeeeeeccccccC------------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHH
Confidence 7766655 44443 567899999999999999999999999999999999999999876543211
Q ss_pred --hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 367 --SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 367 --~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
......+...+|.+|+.+|+|+|++++||++++.++++||+.|.+|||+++
T Consensus 211 ~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~sl 263 (264)
T d1spxa_ 211 KFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSL 263 (264)
T ss_dssp --HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChhh
Confidence 112233455678899999999999999999876678999999999999875
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=9.9e-49 Score=372.26 Aligned_cols=249 Identities=21% Similarity=0.268 Sum_probs=215.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++... ..+.+++||++|+++++++++++.++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999998887542 24778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 219 NKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+|++|+||||||+.... .+.+.++|++++++|+.|++++++.++|+|. +++.|+||++
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~~g~ii~i 141 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMI------------------PAKKGSIVFT 141 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHG------------------GGTCEEEEEE
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHh------------------hcCCCCcccc
Confidence 99999999999986432 5678899999999999999999999999998 5678999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+.. +...+|++||+|+++|+++||.||+++|||||+|+||+|+|+|............+...
T Consensus 142 ss~~~~~~~~-----------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 210 (268)
T d2bgka1 142 ASISSFTAGE-----------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELA 210 (268)
T ss_dssp CCGGGTCCCT-----------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHH
T ss_pred cccccccccc-----------ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHH
Confidence 9998877541 23458999999999999999999999999999999999999998776433333322222
Q ss_pred h--HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 375 K--PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 375 ~--~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
. ..+.+++.+|||+|++++||+++ ++.++||+.|.+|||++...+
T Consensus 211 ~~~~~~~gr~~~pedvA~~v~fL~S~-~s~~itGq~i~VDGG~t~~~p 257 (268)
T d2bgka1 211 HQAANLKGTLLRAEDVADAVAYLAGD-ESKYVSGLNLVIDGGYTRTNP 257 (268)
T ss_dssp HHTCSSCSCCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCCT
T ss_pred HhccccCCCCcCHHHHHHHHHHHhCh-hhCCccCceEEECcCcccCCC
Confidence 2 23557899999999999999965 589999999999999987654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=6.1e-49 Score=371.02 Aligned_cols=243 Identities=25% Similarity=0.298 Sum_probs=215.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+||||||++|||+++|++|+++|++|++++|+.++++++.+++.... .++.+++||++|+++++++++++.+++|+|
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 789999999999999999999999999999999999999999987654 378889999999999999999999999999
Q ss_pred eEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 223 NVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 223 D~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
|+||||||+.... .+.+.++|++++++|+.|+++++++++|+|.+ ....++||++||.++.
T Consensus 80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~-----------------~~~~g~Iv~isS~~~~ 142 (255)
T d1gega_ 80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKK-----------------EGHGGKIINACSQAGH 142 (255)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTSCEEEEEECCGGGT
T ss_pred cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhh-----------------hccccccccccchhhc
Confidence 9999999986543 67899999999999999999999999998874 3456899999999988
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--------CCchhHHHH
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--------YYDSWLSTV 372 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--------~~~~~~~~~ 372 (429)
.+. +...+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|..... ....+....
T Consensus 143 ~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 210 (255)
T d1gega_ 143 VGN------------PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAE 210 (255)
T ss_dssp SCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred ccC------------cccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHH
Confidence 765 678899999999999999999999999999999999999999875432 112233344
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+|++|+.+|+|+|++++||+++ +++++||+.|.+|||+..
T Consensus 211 ~~~~~pl~R~~~peevA~~v~fL~S~-~a~~itG~~i~vDGG~~~ 254 (255)
T d1gega_ 211 FAKRITLGRLSEPEDVAACVSYLASP-DSDYMTGQSLLIDGGMVF 254 (255)
T ss_dssp HHTTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESSSSSC
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCc-hhCCccCcEEEecCCEEe
Confidence 56678889999999999999999964 589999999999999754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.4e-49 Score=371.15 Aligned_cols=233 Identities=24% Similarity=0.329 Sum_probs=205.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+|+||++|||||++|||+++|++|+++|++|++++|+.+.++ .+..+++|++|+++++++++++.
T Consensus 2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc-------------CceEEEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999875432 45678999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||+..+. .+.+.++|++++++|+.+++++++.++|+|+ +++.|+||++
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~g~Iv~i 130 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQ------------------RNKFGRMIFI 130 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEE
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccc------------------ccCCCceEEE
Confidence 9999999999999986543 6778999999999999999999999999998 5678999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. ++..+|++||+|+++|+++||.|++++|||||+|+||+|+|+|.+... +...+...
T Consensus 131 sS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~---~~~~~~~~ 195 (237)
T d1uzma1 131 GSVSGLWGI------------GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD---ERIQQGAL 195 (237)
T ss_dssp CCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC---HHHHHHHG
T ss_pred cchhhccCC------------cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccC---HHHHHHHH
Confidence 999998775 668899999999999999999999999999999999999999987654 34445566
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+|.+|+.+|||+|++++||+++ ++.++||+.|.+|||..
T Consensus 196 ~~~pl~R~~~pedvA~~v~fL~S~-~s~~itG~~i~vdGG~~ 236 (237)
T d1uzma1 196 QFIPAKRVGTPAEVAGVVSFLASE-DASYISGAVIPVDGGMG 236 (237)
T ss_dssp GGCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTT
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCeEEECCCCC
Confidence 778889999999999999999965 58999999999999965
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=3.9e-49 Score=376.12 Aligned_cols=253 Identities=21% Similarity=0.195 Sum_probs=218.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++..... ..++.+++||++++++++++++++.+
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999877643 34789999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 218 ENKKINVLINNAGVSGCR----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
++|+||+||||||..... ...+.++|++.+++|+.++|+++++++|+|+ +++.|+|++
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~------------------~~~~g~ii~ 142 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLI------------------KTKGEIVNV 142 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEE
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccc------------------ccccccccc
Confidence 999999999999975332 4457889999999999999999999999998 556789999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH----
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL---- 369 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~---- 369 (429)
+||.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++...........
T Consensus 143 ~ss~~~~~~~------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~ 210 (274)
T d1xhla_ 143 SSIVAGPQAH------------SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLY 210 (274)
T ss_dssp CCGGGSSSCC------------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHH
T ss_pred hhhhhccccC------------CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHH
Confidence 8888876654 668899999999999999999999999999999999999999876553211111
Q ss_pred --HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccccc
Q psy12836 370 --STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDG 421 (429)
Q Consensus 370 --~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~ 421 (429)
.......+|.+|+.+|+|+|++++||++.+.++++||+.|.+|||+++...-
T Consensus 211 ~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~l~~g~ 264 (274)
T d1xhla_ 211 SFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGM 264 (274)
T ss_dssp HHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGG
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHHHhcCC
Confidence 1112234688999999999999999997556789999999999999887543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=3.9e-48 Score=365.86 Aligned_cols=249 Identities=24% Similarity=0.273 Sum_probs=217.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++..... .+.++.||+++.++++++++++.+
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999988866543 678889999999999999999999
Q ss_pred hC-CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 218 EN-KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 218 ~~-g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
++ +.+|+||||||..... .+++.++|++++++|+.++++++++++|.|. ++..|+||++
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~------------------~~~~g~ii~i 141 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLK------------------ASQNGNVIFL 141 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTSEEEEEE
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccc------------------cccccccccc
Confidence 98 6899999999987543 6789999999999999999999999999998 5578999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---CchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY---YDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~ 371 (429)
||.++..+. +...+|+++|+|+++|++.||+|++++|||||+|+||+++|+|.+.... ..++..+
T Consensus 142 sS~~~~~~~------------~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 209 (258)
T d1ae1a_ 142 SSIAGFSAL------------PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEID 209 (258)
T ss_dssp CCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHH
T ss_pred ccccccccc------------ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHH
Confidence 999998775 6788999999999999999999999999999999999999999866532 2344556
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
.+....|++|+.+|+|+|++++||+++ ++.++||+.|.+|||++...
T Consensus 210 ~~~~~~plgR~~~pediA~~v~fL~S~-~s~~itG~~i~vDGG~s~~g 256 (258)
T d1ae1a_ 210 NFIVKTPMGRAGKPQEVSALIAFLCFP-AASYITGQIIWADGGFTANG 256 (258)
T ss_dssp HHHHHSTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCS
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCh-hhCCCcCcEEEeCCCeeccC
Confidence 667788889999999999999999965 47999999999999998754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-48 Score=365.28 Aligned_cols=240 Identities=23% Similarity=0.240 Sum_probs=210.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+||+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .+..+.||++|++++++++ +
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~~~~~v~~~~----~ 70 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP------GIEPVCVDLGDWDATEKAL----G 70 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHH----T
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHH----H
Confidence 47899999999999999999999999999999999999998887776652 3567899999999887665 4
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++|+||+||||||+.... .+.+.++|++.+++|+.+++++++.+.|.|.+ ++.+|+||++|
T Consensus 71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~-----------------~~~~g~ii~is 133 (242)
T d1cyda_ 71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMIN-----------------RGVPGSIVNVS 133 (242)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEEC
T ss_pred HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhh-----------------hcccCcccccc
Confidence 679999999999986543 67899999999999999999999999998763 44679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|+|.+.... .+...+.+..
T Consensus 134 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~-~~~~~~~~~~ 200 (242)
T d1cyda_ 134 SMVAHVTF------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA-DPEFARKLKE 200 (242)
T ss_dssp CGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC-CHHHHHHHHH
T ss_pred hhhccccC------------CccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcC-CHHHHHHHHh
Confidence 99887765 6688999999999999999999999999999999999999999876543 2445555677
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..|++|+.+|||+|++++||+++ ++.++||+.|.+|||+..+
T Consensus 201 ~~pl~R~~~peeva~~v~fL~S~-~s~~itG~~i~vDGG~~as 242 (242)
T d1cyda_ 201 RHPLRKFAEVEDVVNSILFLLSD-RSASTSGGGILVDAGYLAS 242 (242)
T ss_dssp HSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSSEEEESTTGGGC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc-hhcCcCCceEEeCcchhcc
Confidence 78889999999999999999965 5899999999999998753
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-48 Score=373.11 Aligned_cols=256 Identities=20% Similarity=0.291 Sum_probs=221.3
Q ss_pred ccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc---CCceEEEEEeeCCCHHHHH
Q psy12836 133 KYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES---KNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 133 ~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dls~~~sv~ 209 (429)
.+...-.|+||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.... .+.++.+++||++|+++++
T Consensus 3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 3444567999999999999999999999999999999999999999999999987643 2457999999999999999
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++++.+++|+||+||||||..... .+.+.++|++.+++|+.|+|+++++++|+|. +++
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~ 144 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWM------------------KEH 144 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTH------------------HHH
T ss_pred HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhc------------------ccc
Confidence 99999999999999999999986433 6789999999999999999999999999998 456
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC-CCc
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-YYD 366 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-~~~ 366 (429)
.|+||++||. +..+. +...+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++..... ...
T Consensus 145 ~g~Ii~~ss~-~~~~~------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 211 (297)
T d1yxma1 145 GGSIVNIIVP-TKAGF------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWG 211 (297)
T ss_dssp CEEEEEECCC-CTTCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGG
T ss_pred cccccccccc-ccccc------------cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccC
Confidence 7899998764 33332 668899999999999999999999999999999999999999875443 222
Q ss_pred hhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 367 SWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
+...+.....+|++|+.+|+|+|++++||+++ ++.++||+.|.+|||+++...
T Consensus 212 ~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd-~s~~iTG~~i~VDGG~sl~~~ 264 (297)
T d1yxma1 212 QSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSP-AASFITGQSVDVDGGRSLYTH 264 (297)
T ss_dssp GGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCBT
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhcCcCCcEEEeCcChhhhcC
Confidence 33444455677889999999999999999965 589999999999999987543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=3.5e-48 Score=366.88 Aligned_cols=254 Identities=24% Similarity=0.252 Sum_probs=220.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++..++||++++++++++++++.
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999988888866544 468899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||+.... .+.+.++|++.+++|+.|++++++.+.|+|.+ +...|+|+++
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-----------------~~~~g~i~~~ 145 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQ-----------------KQQKGSIVVT 145 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEE
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccc-----------------cccceEEEEe
Confidence 9999999999999986543 67899999999999999999999999999864 4567888888
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
+|......... .....++..+|++||+|+.+|+|.||.|++++|||||+|+||+|+|++..... +...+.+.
T Consensus 146 ~s~~~~~~~~~-----~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~---~~~~~~~~ 217 (260)
T d1h5qa_ 146 SSMSSQIINQS-----SLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD---KKIRDHQA 217 (260)
T ss_dssp CCGGGTSCCEE-----ETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC---HHHHHHHH
T ss_pred ecccccccccc-----ccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccC---HHHHHHHH
Confidence 88766543211 00112457889999999999999999999999999999999999999987754 44555667
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
..+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||+..
T Consensus 218 ~~~pl~R~g~pedvA~~v~fL~S~-~s~~itG~~i~VDGG~~~ 259 (260)
T d1h5qa_ 218 SNIPLNRFAQPEEMTGQAILLLSD-HATYMTGGEYFIDGGQLI 259 (260)
T ss_dssp HTCTTSSCBCGGGGHHHHHHHHSG-GGTTCCSCEEEECTTGGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhcc-hhCCCcCceEEECCCeec
Confidence 788889999999999999999964 588999999999999854
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-48 Score=361.25 Aligned_cols=239 Identities=23% Similarity=0.258 Sum_probs=209.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
++.|+||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .+..+.+|++|++++++++
T Consensus 2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~v~~~~---- 71 (244)
T d1pr9a_ 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEATERAL---- 71 (244)
T ss_dssp CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHH----
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHHHHHHH----
Confidence 457899999999999999999999999999999999999999888777652 3567889999999987766
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||..... .+.+.++|++.+++|+.+++++++.++|.|.+ ++..|+||++
T Consensus 72 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~-----------------~~~~g~Ii~i 134 (244)
T d1pr9a_ 72 GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIA-----------------RGVPGAIVNV 134 (244)
T ss_dssp TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HTCCEEEEEE
T ss_pred HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHH-----------------hCCcceEeec
Confidence 4679999999999987544 67899999999999999999999999997653 4567999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.++..+. +...+|++||+|+++|+|+||.|++++|||||+|+||+|+|++.+.... .+...+.+.
T Consensus 135 sS~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~ 201 (244)
T d1pr9a_ 135 SSQCSQRAV------------TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTML 201 (244)
T ss_dssp CCGGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHHHHHHH
T ss_pred ccccccccc------------cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHHHHHHH
Confidence 999998765 6688999999999999999999999999999999999999999876543 233445566
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++
T Consensus 202 ~~~pl~R~~~peevA~~v~fL~S~-~a~~itG~~i~vDGG~~ 242 (244)
T d1pr9a_ 202 NRIPLGKFAEVEHVVNAILFLLSD-RSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp TTCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCc-hhCCcCCcEEEECccHh
Confidence 778889999999999999999965 58999999999999986
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=4.4e-48 Score=364.47 Aligned_cols=243 Identities=22% Similarity=0.206 Sum_probs=209.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++. .+..++++|++++++++++++++.++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999988887762 35778899999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||+..+. .+.+.++|++++++|+.++|++++.++|+|+ + .+|+||++||
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~------------------~-~~G~Iv~isS 138 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMK------------------E-TGGSIINMAS 138 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT------------------T-TCEEEEEECC
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHH------------------h-cCCceecccc
Confidence 99999999999987543 6789999999999999999999999999996 3 3599999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEEEEEeCCCccCCcccCCCCC--chhHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG--TGITVNAVHPGIVNTDILRHSSYY--DSWLSTV 372 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrVn~V~PG~v~T~~~~~~~~~--~~~~~~~ 372 (429)
.++..+. +...+|++||+|+.+|++++|.|+++ +|||||+|+||+|+|++.+..... .++....
T Consensus 139 ~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 206 (253)
T d1hxha_ 139 VSSWLPI------------EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLH 206 (253)
T ss_dssp GGGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBC
T ss_pred hhhhcCc------------cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHh
Confidence 9998765 67889999999999999999999987 459999999999999987543211 1111111
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.....+.+++.+|+|+|++++||+++ ++.++||+.|.+|||+...
T Consensus 207 ~~~~~~~gr~~~pedvA~~v~fL~S~-~s~~itG~~i~VDGG~~~~ 251 (253)
T d1hxha_ 207 DPKLNRAGRAYMPERIAQLVLFLASD-ESSVMSGSELHADNSILGM 251 (253)
T ss_dssp BTTTBTTCCEECHHHHHHHHHHHHSG-GGTTCCSCEEEESSSCTTT
T ss_pred CccccccCCCCCHHHHHHHHHHHhCh-hhCCCcCcEEEECccHhhC
Confidence 11233456788999999999999965 5899999999999997643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-47 Score=360.33 Aligned_cols=242 Identities=28% Similarity=0.333 Sum_probs=213.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++.+++||++++++++++++++.+++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 37999999999999999999999999999999999999999999998877666789999999999999999999999999
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
|+||+||||||... .++|++++++|+.++++++++++|+|.++. ....|+||++||.++
T Consensus 81 G~iDilVnnAg~~~------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~---------------~~~~g~Iv~isS~~~ 139 (254)
T d2gdza1 81 GRLDILVNNAGVNN------EKNWEKTLQINLVSVISGTYLGLDYMSKQN---------------GGEGGIIINMSSLAG 139 (254)
T ss_dssp SCCCEEEECCCCCC------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGG---------------TCCCEEEEEECCGGG
T ss_pred CCcCeecccccccc------cccchheeeeehhhHHHHHHHHHHHHHHhh---------------cCCCcEEEeeccHhh
Confidence 99999999999864 356899999999999999999999997532 234589999999999
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHH--HHHHhcCCCeEEEEEeCCCccCCcccCCCCC-----chhHHHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRE--LAKRLEGTGITVNAVHPGIVNTDILRHSSYY-----DSWLSTV 372 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~--la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-----~~~~~~~ 372 (429)
..+. +...+|++||+|+.+|+|+ |+.|++++|||||+|+||+|+|+|.+..... .....+.
T Consensus 140 ~~~~------------~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~ 207 (254)
T d2gdza1 140 LMPV------------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDH 207 (254)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHH
T ss_pred ccCC------------CCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHH
Confidence 8775 6688999999999999996 7889999999999999999999998765321 1123344
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+...+|.+++.+|+|+|++++||++++ ++||+.|.+|||...
T Consensus 208 ~~~~~p~~r~~~pedvA~~v~fL~s~~---~itG~~i~VdGG~~~ 249 (254)
T d2gdza1 208 IKDMIKYYGILDPPLIANGLITLIEDD---ALNGAIMKITTSKGI 249 (254)
T ss_dssp HHHHHHHHCCBCHHHHHHHHHHHHHCT---TCSSCEEEEETTTEE
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHHcCC---CCCCCEEEECCCCee
Confidence 556788899999999999999999864 499999999999754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=2.1e-47 Score=364.49 Aligned_cols=244 Identities=22% Similarity=0.209 Sum_probs=210.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++. .++..+.+|+++.++++++++++.+
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----DNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeeEEecccccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999887776652 3688999999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcE
Q psy12836 218 ENKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSR 290 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 290 (429)
++|++|++|||||+.... .+.+.++|+++|++|+.|++++++.++|+|++ + +|+
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~------------------~-~g~ 136 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVA------------------S-RGN 136 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------------------H-TCE
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHh------------------c-CCC
Confidence 999999999999986432 22345679999999999999999999999973 2 489
Q ss_pred EEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC------
Q psy12836 291 IINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY------ 364 (429)
Q Consensus 291 IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~------ 364 (429)
||+++|.++..+. ++..+|++||+|+.+|+|+||.|+++. ||||+|+||+|+|+|......
T Consensus 137 iI~i~S~~~~~~~------------~~~~~Y~asKaal~~ltr~lA~ela~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~ 203 (276)
T d1bdba_ 137 VIFTISNAGFYPN------------GGGPLYTAAKHAIVGLVRELAFELAPY-VRVNGVGSGGINSDLRGPSSLGMGSKA 203 (276)
T ss_dssp EEEECCGGGTSTT------------SSCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCCCSCCCCCGGGC-----
T ss_pred ceeeeechhccCC------------CCCchHHHHHHHHHHHHHHHHHHhhcc-eEEcccCCCCEecCcCCccchhhhhhc
Confidence 9999999887765 668899999999999999999999975 999999999999998654321
Q ss_pred -CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 -YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+...+.+...+|.+|+.+|+|+|++++||+++++++++||+.|.+|||++..
T Consensus 204 ~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~~~ 258 (276)
T d1bdba_ 204 ISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLGVR 258 (276)
T ss_dssp ----CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGGGC
T ss_pred cCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChhhc
Confidence 112233445567888999999999999999997666889999999999998864
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-46 Score=354.03 Aligned_cols=248 Identities=21% Similarity=0.275 Sum_probs=213.7
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.+|+||+||||||++|||+++|+.|+++|++|++++|+.++++++.++++....+.++.+++||++++++++++++++
T Consensus 4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 4 GMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 35569999999999999999999999999999999999999999999999988876678999999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|+||+||||||...+. .+.+.++|++.+++|+.++|++++.++|.|+++ ....|+||+
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~----------------~~~~g~Ii~ 147 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER----------------NVDDGHIIN 147 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----------------TCCSCEEEE
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHh----------------ccCCCceEE
Confidence 99999999999999986543 678999999999999999999999999999743 335699999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--cCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRL--EGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el--~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
+||.++....+ +....+|++||+|+.+|+++|+.|+ +++|||||+|+||+++|++....... ..+
T Consensus 148 isS~~~~~~~p----------~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~---~~~ 214 (257)
T d1xg5a_ 148 INSMSGHRVLP----------LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDK---DPE 214 (257)
T ss_dssp ECCGGGTSCCS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTT---CHH
T ss_pred EechHhcCCCC----------CcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChh---hHH
Confidence 99999865431 1456779999999999999999998 78999999999999999987655422 223
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceE-EecCc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKY-FACYD 413 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~-i~~~g 413 (429)
......+.+++.+|+|+|++++||++++ ++++||+. +..+|
T Consensus 215 ~~~~~~~~~r~~~pedvA~~v~fL~s~~-a~~itG~i~i~~~g 256 (257)
T d1xg5a_ 215 KAAATYEQMKCLKPEDVAEAVIYVLSTP-AHIQIGDIQMRPTG 256 (257)
T ss_dssp HHHHHHC---CBCHHHHHHHHHHHHHSC-TTEEEEEEEEEETT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCCh-hcCeECCEEEEeCC
Confidence 3556677889999999999999999876 78999997 44443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1.6e-46 Score=351.29 Aligned_cols=237 Identities=22% Similarity=0.257 Sum_probs=206.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.+++||++++++++++++++.++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999887766554 246888999999999999999999999
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+|++|+||||||..... .+.+.++|++++++|+.+++.+++.++|+|. +.+.|+++||
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~--------------------~~~~i~~~ss 136 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLE--------------------EGGSLVLTGS 136 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------TTCEEEEECC
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccc--------------------cccceeeccc
Confidence 99999999999986543 6789999999999999999999999999875 3456777776
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.+.... ++..+|+++|+|+++|+++||+|++++|||||+|+||+++|++.+... ++..+.+...
T Consensus 137 ~a~~~~-------------~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~---~~~~~~~~~~ 200 (241)
T d2a4ka1 137 VAGLGA-------------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP---PWAWEQEVGA 200 (241)
T ss_dssp CTTCCH-------------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC---HHHHHHHHHT
T ss_pred cccccc-------------cCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhh---HhHHHHHHhC
Confidence 554322 457789999999999999999999999999999999999999987654 3445556677
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++.
T Consensus 201 ~p~~r~~~p~dva~~v~fL~S~-~s~~itG~~i~vDGG~s~ 240 (241)
T d2a4ka1 201 SPLGRAGRPEEVAQAALFLLSE-ESAYITGQALYVDGGRSI 240 (241)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTTTT
T ss_pred CCCCCCcCHHHHHHHHHHHhcc-hhCCCcCceEEeCCCccc
Confidence 8889999999999999999964 589999999999999875
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=1.9e-46 Score=353.21 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=206.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
|+|||||++|||+++|++|+++|++|++++|+.++++++.... .. +.++|+++.++++++++++.++||+||
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~-~~-------~~~~dv~~~~~~~~~~~~~~~~~G~iD 73 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA-ET-------YPQLKPMSEQEPAELIEAVTSAYGQVD 73 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH-HH-------CTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhh-Cc-------EEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999988877665432 22 236899999999999999999999999
Q ss_pred EEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 224 VLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 224 ~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
+||||||+... ..+.+.++|++.+++|+.++|+++++++|+|+ +++.|+||++||.++.
T Consensus 74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~------------------~~~~G~IV~isS~~~~ 135 (252)
T d1zmta1 74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMK------------------KRKSGHIIFITSATPF 135 (252)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCCEEEEECCSTTT
T ss_pred EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhc------------------ccccceeecccccccc
Confidence 99999997533 36788999999999999999999999999998 4567999999999987
Q ss_pred cCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-----CchhHHHHHHh
Q psy12836 301 RGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-----YDSWLSTVVLK 375 (429)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-----~~~~~~~~~~~ 375 (429)
.+. +...+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++...... ..++..+.+..
T Consensus 136 ~~~------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~ 203 (252)
T d1zmta1 136 GPW------------KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKK 203 (252)
T ss_dssp SCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHH
T ss_pred ccc------------ccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHh
Confidence 765 6678999999999999999999999999999999999999999866532 22334455667
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..|++|+.+|+|+|++++||+++ +++++||+.|.+|||++..
T Consensus 204 ~~pl~R~g~pedvA~~v~fL~S~-~s~~iTG~~i~vdGG~~~~ 245 (252)
T d1zmta1 204 VTALQRLGTQKELGELVAFLASG-SCDYLTGQVFWLAGGFPMI 245 (252)
T ss_dssp HSSSSSCBCHHHHHHHHHHHHTT-SCGGGTTCEEEESTTCCCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc-hhcCCcCCeEEECCCceeC
Confidence 78889999999999999999965 5899999999999998764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-46 Score=352.02 Aligned_cols=245 Identities=17% Similarity=0.118 Sum_probs=204.4
Q ss_pred CCCCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..+|+||++|||||+| |||+++|++|+++|++|++++|+++..+++. ++..... ...++++|++|++++++++++
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~-~~~~~~~--~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAE-KLAEALG--GALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHHHHTT--CCEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHH-HhhhccC--cccccccccCCHHHHHHHHHH
Confidence 3589999999999987 9999999999999999999999876555443 3333333 456789999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 215 VKKENKKINVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
+.+++|+||+||||||.... ..+.+.++|+..+++|+.+++.+++.+.|+|+ +.
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~--------------------~~ 139 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLR--------------------EG 139 (256)
T ss_dssp HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE--------------------EE
T ss_pred HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhc--------------------cC
Confidence 99999999999999997532 24567889999999999999999999998875 24
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
|+||++||.++..+. ++..+|++||+|+++|+|+||.||+++|||||+|+||+|+|++...... .+.
T Consensus 140 G~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~-~~~ 206 (256)
T d1ulua_ 140 GGIVTLTYYASEKVV------------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG-FTK 206 (256)
T ss_dssp EEEEEEECGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------CHH
T ss_pred CEEEEEeehHhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhh-hHH
Confidence 899999999988765 6788999999999999999999999999999999999999998776543 234
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
..+.+....|++|+.+|+|+|++++||+++ ++.++||+.|.+|||++..
T Consensus 207 ~~~~~~~~~pl~R~~~pedvA~~v~fL~S~-~s~~itG~~i~VDGG~~~~ 255 (256)
T d1ulua_ 207 MYDRVAQTAPLRRNITQEEVGNLGLFLLSP-LASGITGEVVYVDAGYHIM 255 (256)
T ss_dssp HHHHHHHHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGB
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc-hhCCccCCeEEECcCEeCc
Confidence 455667788889999999999999999965 5889999999999998764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.6e-46 Score=346.20 Aligned_cols=230 Identities=20% Similarity=0.261 Sum_probs=198.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|+||++|||||++|||+++|++|+++|++|++++|+.+.+++. ...++.||+++. ++.+.+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-----------~~~~~~~Dv~~~------~~~~~~~~ 64 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----------GHRYVVCDLRKD------LDLLFEKV 64 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----------CSEEEECCTTTC------HHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-----------CCcEEEcchHHH------HHHHHHHh
Confidence 6899999999999999999999999999999999998765432 123568999863 45566778
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
|+||+||||||..... .+.+.++|++.+++|+.+++++++.++|+|+ +++.|+||+++|.
T Consensus 65 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~------------------~~~~G~ii~i~S~ 126 (234)
T d1o5ia_ 65 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMK------------------EKGWGRIVAITSF 126 (234)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECCG
T ss_pred CCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccc------------------ccccccccccccc
Confidence 9999999999986543 6789999999999999999999999999998 5567999999998
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHH
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPL 377 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 377 (429)
.+..+. +...+|++||+|+.+|+|++|.|++++|||||+|+||+++|++..... .+...+.+....
T Consensus 127 ~~~~~~------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~--~~~~~~~~~~~~ 192 (234)
T d1o5ia_ 127 SVISPI------------ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL--SEEKKKQVESQI 192 (234)
T ss_dssp GGTSCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS--CHHHHHHHHTTS
T ss_pred cccccc------------cccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc--CHHHHHHHHhcC
Confidence 887664 668899999999999999999999999999999999999999976543 233445566778
Q ss_pred hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 378 VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 378 ~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++..|
T Consensus 193 pl~R~~~pediA~~v~fL~S~-~s~~itG~~i~vDGG~s~~p 233 (234)
T d1o5ia_ 193 PMRRMAKPEEIASVVAFLCSE-KASYLTGQTIVVDGGLSKFP 233 (234)
T ss_dssp TTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTCCCCC
T ss_pred CCCCCcCHHHHHHHHHHHhCh-hhcCCcCcEEEECcccccCC
Confidence 889999999999999999965 58999999999999987654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=7.3e-46 Score=350.64 Aligned_cols=244 Identities=22% Similarity=0.260 Sum_probs=209.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE-cChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC-RDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~-R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
++|+||+||||||++|||+++|++|+++|++|++++ |+.+.++++.+++..... ++..++||++|+++++++++++.
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999875 555667777777765443 68899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|+||+||||||..... .+.+.++|++.|++|+.+++++++.++|+|+ + .|+++++
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~------------------~--~g~~iii 139 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR------------------R--GGRIILT 139 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE------------------E--EEEEEEE
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhh------------------c--CCccccc
Confidence 9999999999999987544 6678999999999999999999999999986 2 3688888
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCC----------CC
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHS----------SY 364 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~----------~~ 364 (429)
+|..+.... ++...+|++||+|+.+|+|+||+|++++|||||+|+||+++|+|.+.. ..
T Consensus 140 ~s~~~~~~~-----------~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~ 208 (259)
T d1ja9a_ 140 SSIAAVMTG-----------IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGM 208 (259)
T ss_dssp CCGGGTCCS-----------CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTC
T ss_pred ccccccccC-----------CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccC
Confidence 887665432 267889999999999999999999999999999999999999986421 11
Q ss_pred CchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 365 YDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
..++..+.+....|.+|+.+|+|+|++++||+++. +.++||+.|.+|||+
T Consensus 209 ~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~-a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 209 PQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEE-SEWINGQVIKLTGGG 258 (259)
T ss_dssp CHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCch-hcCCcCceEEeCCCC
Confidence 22344555667788899999999999999999764 799999999999995
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=2.1e-45 Score=343.33 Aligned_cols=227 Identities=24% Similarity=0.340 Sum_probs=200.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCE-------EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAK-------VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~-------Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
++||||||++|||+++|++|+++|++ |++++|+.++++++.++++..+ .++.+++||++|+++++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~ 79 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI 79 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence 57999999999999999999999997 9999999999999999987654 47889999999999999999999
Q ss_pred HHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEE
Q psy12836 216 KKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIIN 293 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 293 (429)
.+++|++|+||||||+.... .+.+.++|+++|++|+.|++++++.++|+|+ +++.|+||+
T Consensus 80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~------------------~~~~G~Ii~ 141 (240)
T d2bd0a1 80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALME------------------RQHSGHIFF 141 (240)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEE
T ss_pred HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHH------------------hcCCCceEE
Confidence 99999999999999987543 6789999999999999999999999999998 456799999
Q ss_pred EcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 294 VSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 294 vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
+||.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|.+......
T Consensus 142 isS~~~~~~~------------~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~~------- 202 (240)
T d2bd0a1 142 ITSVAATKAF------------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM------- 202 (240)
T ss_dssp ECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCSTT-------
T ss_pred EechhhcCCC------------CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHhh-------
Confidence 9999998775 678899999999999999999999999999999999999999987764211
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCce-EEecCcc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGK-YFACYDR 414 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~-~i~~~gg 414 (429)
..++.+|||+|++++|+++++ .++++|+ .+..++|
T Consensus 203 -----~~~~~~PedvA~~v~~l~s~~-~~~~~~~~~i~p~~G 238 (240)
T d2bd0a1 203 -----QALMMMPEDIAAPVVQAYLQP-SRTVVEEIILRPTSG 238 (240)
T ss_dssp -----GGGSBCHHHHHHHHHHHHTSC-TTEEEEEEEEEETTC
T ss_pred -----HhcCCCHHHHHHHHHHHHcCC-ccCccCCEEEEecCC
Confidence 135679999999999999887 4566665 4555554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=3.1e-45 Score=348.76 Aligned_cols=252 Identities=24% Similarity=0.308 Sum_probs=213.1
Q ss_pred CcccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC-hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHH
Q psy12836 131 GAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD-LDKCEKARKEVVLESKNKYVLCRKCDLASQESIR 209 (429)
Q Consensus 131 ~~~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~-~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~ 209 (429)
|...+...+|+||++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++..... ++.++++|++|+++++
T Consensus 7 ~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 7 GPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIV 84 (272)
T ss_dssp SCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHH
T ss_pred CCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHH
Confidence 444455778999999999999999999999999999999999887 5566777777765543 7889999999999999
Q ss_pred HHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCC
Q psy12836 210 AFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESA 287 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++++++.+.+|+||++|||||..... .+.+.++|++.+++|+.+++++++.++|+|. .
T Consensus 85 ~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~--------------------~ 144 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--------------------I 144 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC--------------------T
T ss_pred HHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccc--------------------c
Confidence 99999999999999999999986544 6778999999999999999999999999996 3
Q ss_pred CcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC---
Q psy12836 288 PSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY--- 364 (429)
Q Consensus 288 ~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~--- 364 (429)
.|++++++|..+.... ++....|++||+|+++|+|+||.||+++|||||+|+||+|+|++.+....
T Consensus 145 ~g~~i~i~s~~~~~~~-----------~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~ 213 (272)
T d1g0oa_ 145 GGRLILMGSITGQAKA-----------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYI 213 (272)
T ss_dssp TCEEEEECCGGGTCSS-----------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGS
T ss_pred cccccccccccccccc-----------ccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhh
Confidence 4799999988765432 25678899999999999999999999999999999999999998643211
Q ss_pred ------CchhH-HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 365 ------YDSWL-STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 365 ------~~~~~-~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
..+.. .......+|++|+.+|+|+|++++||+++ .+.++||+.|.+|||..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~-~s~~itG~~i~vDGG~~ 271 (272)
T d1g0oa_ 214 PNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASN-DGGWVTGKVIGIDGGAC 271 (272)
T ss_dssp TTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTCC
T ss_pred hcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCc-hhcCccCceEeECCCCC
Confidence 11111 12234567889999999999999999965 58999999999999974
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=1.1e-44 Score=348.65 Aligned_cols=255 Identities=16% Similarity=0.212 Sum_probs=220.0
Q ss_pred CCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 135 TEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 135 ~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+..+|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++....+ .++.+++||+++.++++++++.
T Consensus 18 ~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 18 LPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp SCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhh
Confidence 335799999999999999999999999999999999999999999999988877654 4678899999999999999999
Q ss_pred HHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
+.++++++|+||||||..... ...+.++++..+.+|..+.+.+.+...+.+.. ....+.++
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~~~i~ 159 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK-----------------AQKGAAFL 159 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TTCCEEEE
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccc-----------------cccccccc
Confidence 999999999999999987544 66788999999999999999999988877663 45678889
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+++|.++..+. ++..+|++||+|+++|+|.||.|++++|||||+|+||+|+|++........+...+.
T Consensus 160 ~~ss~~~~~~~------------~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~ 227 (294)
T d1w6ua_ 160 SITTIYAETGS------------GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKE 227 (294)
T ss_dssp EECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHH
T ss_pred ccccchhhhcc------------cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHH
Confidence 99998887764 668899999999999999999999999999999999999999987655444555566
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
....+|.+|+.+|+|+|++++||+++ ++.++||+.|.+|||.++...
T Consensus 228 ~~~~~pl~R~~~pediA~~v~fL~sd-~s~~itG~~i~vDGG~~l~~~ 274 (294)
T d1w6ua_ 228 MIGRIPCGRLGTVEELANLAAFLCSD-YASWINGAVIKFDGGEEVLIS 274 (294)
T ss_dssp HHTTCTTSSCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTHHHHHH
T ss_pred HhhcCCCCCCCCHHHHHHHHHHHhCc-hhcCCCCcEEEECCChhheeC
Confidence 77788899999999999999999965 578999999999999775444
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.1e-44 Score=346.24 Aligned_cols=231 Identities=20% Similarity=0.232 Sum_probs=200.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC---------hhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD---------LDKCEKARKEVVLESKNKYVLCRKCDLASQES 207 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~---------~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s 207 (429)
.++|+||+||||||++|||+++|++|+++|++|++.+|+ .+.+++..+++.... ....+|+++.++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~ 76 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-----GKAVANYDSVEA 76 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-----CEEEEECCCGGG
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc-----cccccccchHHH
Confidence 467999999999999999999999999999999998654 456666666665432 345789999999
Q ss_pred HHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 208 IRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 208 v~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
++++++++.+++|+||+||||||+..+. .+.+.++|++++++|+.|+|+++++++|+|+ +
T Consensus 77 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~------------------~ 138 (302)
T d1gz6a_ 77 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMK------------------K 138 (302)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHH------------------h
Confidence 9999999999999999999999987544 6789999999999999999999999999998 4
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY 365 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~ 365 (429)
++.|+||++||.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+||++.|++......
T Consensus 139 ~~~G~IV~isS~~~~~~~------------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~~~- 205 (302)
T d1gz6a_ 139 QNYGRIIMTASASGIYGN------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMPE- 205 (302)
T ss_dssp HTCEEEEEECCHHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGSCH-
T ss_pred CCCcEEEEeCChhhcCCC------------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcCcH-
Confidence 567999999999998875 6789999999999999999999999999999999999998876554431
Q ss_pred chhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 366 DSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
+..+..+|+|+|++++||+++. .++||+.|.+|||+..
T Consensus 206 ------------~~~~~~~PedvA~~v~fL~S~~--a~itG~~i~vdGG~~~ 243 (302)
T d1gz6a_ 206 ------------DLVEALKPEYVAPLVLWLCHES--CEENGGLFEVGAGWIG 243 (302)
T ss_dssp ------------HHHHHSCGGGTHHHHHHHTSTT--CCCCSCEEEEETTEEE
T ss_pred ------------hhHhcCCHHHHHHHHHHHcCCC--cCCCCcEEEeCCCcee
Confidence 1134568999999999999753 4789999999999754
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-44 Score=338.39 Aligned_cols=238 Identities=26% Similarity=0.280 Sum_probs=201.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+||+||||||++|||+++|+.|+++|++|++++|+++++++..++ ..+....+|+.+.+.++.. .+.
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~-------~~~~~~~~d~~~~~~~~~~----~~~ 71 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRVLDVTKKKQIDQF----ANE 71 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS-------TTEEEEECCTTCHHHHHHH----HHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-------cCCceeeeecccccccccc----ccc
Confidence 48999999999999999999999999999999999998877654322 2466778899887665554 456
Q ss_pred CCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
++++|+||||||..... .+.+.++|++.+++|+.+++++++.+.|+|. +++.|+||++||
T Consensus 72 ~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~------------------~~~~g~Ii~isS 133 (245)
T d2ag5a1 72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKML------------------AQKSGNIINMSS 133 (245)
T ss_dssp CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEECC
T ss_pred cccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccc------------------cCCCceeeeeec
Confidence 68999999999987654 6679999999999999999999999999998 557799999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTVV 373 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~~ 373 (429)
..+.... +++..+|++||+|+++|+|+||.|++++|||||+|+||+|+|++..... .......+.+
T Consensus 134 ~~~~~~~-----------~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~ 202 (245)
T d2ag5a1 134 VASSVKG-----------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDF 202 (245)
T ss_dssp SBTTTBC-----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHH
T ss_pred hhhccCC-----------ccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHH
Confidence 8774321 2568899999999999999999999999999999999999999875432 1223344556
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
....|.+|+.+|+|+|+++.||+++ ++.++||+.|.+|||+++
T Consensus 203 ~~~~pl~R~~~pedva~~v~fL~s~-~s~~iTG~~i~VDGG~sl 245 (245)
T d2ag5a1 203 LKRQKTGRFATAEEIAMLCVYLASD-ESAYVTGNPVIIDGGWSL 245 (245)
T ss_dssp HHTCTTSSCEEHHHHHHHHHHHHSG-GGTTCCSCEEEECTTGGG
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCh-hhCCCcCceEEeCCCcCC
Confidence 6678889999999999999999965 589999999999999874
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-43 Score=335.74 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=209.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHH---cCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAK---RKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~---~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..|+||++|||||++|||+++|++|++ +|++|++++|+.++++++.+++....++.++.+++||++++++++++++.
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 368999999999999999999999996 79999999999999999999998888778999999999999999999999
Q ss_pred HHH----hCCCeeEEEEccccCCCC-----CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhccc
Q psy12836 215 VKK----ENKKINVLINNAGVSGCR-----KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQE 285 (429)
Q Consensus 215 i~~----~~g~iD~lI~nAG~~~~~-----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (429)
+.+ .++.+|++|||||...+. .+.+.++|+++|++|+.+++++++.++|+|+++ .
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~----------------~ 145 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDS----------------P 145 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCC----------------T
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhc----------------C
Confidence 876 356899999999976432 567889999999999999999999999999731 1
Q ss_pred CCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--
Q psy12836 286 SAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS-- 363 (429)
Q Consensus 286 ~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~-- 363 (429)
...|+||++||.++..+. ++..+|++||+|+++|+++||.| .+|||||+|+||+|+|+|.+...
T Consensus 146 ~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaal~~lt~~la~e--~~gIrVn~v~PG~i~T~~~~~~~~~ 211 (259)
T d1oaaa_ 146 GLSKTVVNISSLCALQPY------------KGWGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARET 211 (259)
T ss_dssp TCEEEEEEECCGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHH--CTTEEEEEEECCSBSSHHHHHHHHH
T ss_pred CCcccccccccccccCCC------------ccchHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEcCCCCCHHHHHhhhc
Confidence 235899999999998775 67899999999999999999999 67999999999999999875432
Q ss_pred CCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecC
Q psy12836 364 YYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACY 412 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~ 412 (429)
...++..+.+....+.+++.+|+|+|+.+++++++. +++||+.|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~~--s~~TG~~idv~ 258 (259)
T d1oaaa_ 212 SKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKD--TFQSGAHVDFY 258 (259)
T ss_dssp CSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHC--CSCTTEEEETT
T ss_pred CCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhc--cCCCCCeEEec
Confidence 123444455555667788999999999999999753 68999999864
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=1e-43 Score=334.61 Aligned_cols=240 Identities=24% Similarity=0.257 Sum_probs=201.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC-CHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA-SQESIRAFAEEVK 216 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls-~~~sv~~~~~~i~ 216 (429)
++|+||+||||||++|||+++|++|+++|++|++++|+.++.+.. +++....++.++.++.+|++ +.++++++++++.
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999988775544 45556666678999999998 6788999999999
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
+++|+||+||||||.. ++++|++++++|+.|+++++++++|+|.++. ....|+||++||
T Consensus 80 ~~~g~iDilvnnAG~~------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~---------------~~~~g~Ii~isS 138 (254)
T d1sbya1 80 DQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRK---------------GGPGGIIANICS 138 (254)
T ss_dssp HHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGG---------------TCCCEEEEEECC
T ss_pred HHcCCCCEEEeCCCCC------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc---------------cCCCceEEEEec
Confidence 9999999999999964 5678999999999999999999999997531 235699999999
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP 376 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 376 (429)
.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|.+..... +.....+...
T Consensus 139 ~~~~~~~------------~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~-~~~~~~~~~~ 205 (254)
T d1sbya1 139 VTGFNAI------------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSW-LDVEPRVAEL 205 (254)
T ss_dssp GGGTSCC------------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCG-GGSCTTHHHH
T ss_pred hhhccCC------------CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccc-hhHHHHHHhc
Confidence 9998775 67889999999999999999999999999999999999999987765321 1111222222
Q ss_pred HhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 377 LVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 377 ~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
.......+||++|+.+++++++ +.||+.+.+|||..
T Consensus 206 ~~~~~~~~~e~va~~~~~~~~~----~~tG~vi~vdgG~l 241 (254)
T d1sbya1 206 LLSHPTQTSEQCGQNFVKAIEA----NKNGAIWKLDLGTL 241 (254)
T ss_dssp HTTSCCEEHHHHHHHHHHHHHH----CCTTCEEEEETTEE
T ss_pred cccCCCCCHHHHHHHHHHhhhC----CCCCCEEEECCCEe
Confidence 2334567899999999988843 35999999999963
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-43 Score=327.00 Aligned_cols=218 Identities=28% Similarity=0.348 Sum_probs=194.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++...+ .++..+.||++|+++++++++++.
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999987644 478899999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+++|++|++|||||..... .+.+.+.|+++|++|+.|++++++.++|+|. +++.|+||++
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~------------------~~~~G~Iv~i 141 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMT------------------KNNHGHIVTV 141 (244)
T ss_dssp HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HTTCEEEEEE
T ss_pred HHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHH------------------hcCCceEEEe
Confidence 9999999999999987544 5677889999999999999999999999998 5678999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC---CCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG---TGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
||.++..+. +++.+|++||+|+.+|+++|+.|+++ +||+||+|+||+|+|+|.+...
T Consensus 142 sS~~~~~~~------------~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-------- 201 (244)
T d1yb1a_ 142 ASAAGHVSV------------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-------- 201 (244)
T ss_dssp CCCC-CCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH--------
T ss_pred ecchhcCCC------------CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC--------
Confidence 999998775 56889999999999999999999876 6899999999999999876532
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCC
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.+.....+|+++|+.++..+..+
T Consensus 202 -----~~~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 202 -----TSLGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp -----HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred -----ccccCCCCHHHHHHHHHHHHhcC
Confidence 12245679999999999877554
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-42 Score=321.66 Aligned_cols=239 Identities=23% Similarity=0.281 Sum_probs=200.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++|+||+||||||++|||+++|++|+++|++|++++|+.+++++..+++. .......+|+.+.++++....++..
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CCccccccccccccccccccccccc
Confidence 47999999999999999999999999999999999999999988887763 3567889999999999999999999
Q ss_pred hCCCeeEEEEccccCCCC--------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 218 ENKKINVLINNAGVSGCR--------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
.++.+|.+++|+++.... .+.+.++|++++++|+.+++++++++.|+|..+.. ..+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~------------~~~~~~G 143 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEP------------DQGGQRG 143 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCC------------CTTSCCE
T ss_pred ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhh------------hccCCce
Confidence 999999999998865322 44578999999999999999999999999974321 1144678
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
+||++||.++..+. ++..+|++||+|+++|+|+||.|++++|||||+|+||+++|+|....+. ..
T Consensus 144 ~Ii~isS~~~~~~~------------~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~---~~ 208 (248)
T d2o23a1 144 VIINTASVAAFEGQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---KV 208 (248)
T ss_dssp EEEEECCTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------
T ss_pred EEEEecchhhccCC------------CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCH---HH
Confidence 99999999998875 6789999999999999999999999999999999999999999876542 22
Q ss_pred HHHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 370 STVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 370 ~~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
.+.+...+|. +|+.+|+|+|++++||+++ +++||+.|.+
T Consensus 209 ~~~~~~~~pl~~R~g~peevA~~v~fL~s~---~~itGq~I~v 248 (248)
T d2o23a1 209 CNFLASQVPFPSRLGDPAEYAHLVQAIIEN---PFLNGEVIRL 248 (248)
T ss_dssp -CHHHHTCSSSCSCBCHHHHHHHHHHHHHC---TTCCSCEEEE
T ss_pred HHHHHhcCCCCCCCcCHHHHHHHHHHHHhC---CCCCceEeEC
Confidence 2334445554 7899999999999999964 5899999864
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-42 Score=326.12 Aligned_cols=231 Identities=29% Similarity=0.416 Sum_probs=193.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc-CCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR-KAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++|||||++|||+++|++|+++ |++|++++|+.++++++.++++.... ++.+++||++|.++++++++++.+++|+
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 57799999999999999999986 89999999999999999999987654 5778899999999999999999999999
Q ss_pred eeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 222 INVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 222 iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
||+||||||+..+. .+.+.++|+.+|++|++|++++++.++|+|+ +.|+||++||.++
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~--------------------~~g~ivnisS~~~ 141 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK--------------------PQGRVVNVSSIMS 141 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEE--------------------EEEEEEEECCHHH
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hcCCcccccccce
Confidence 99999999987544 4456789999999999999999999999985 2489999999887
Q ss_pred ccCCCCccc-----------------------------CCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC----CCeEE
Q psy12836 300 KRGTINKED-----------------------------LNSENSYDPTQAYNQSKLANVLFTRELAKRLEG----TGITV 346 (429)
Q Consensus 300 ~~~~~~~~~-----------------------------l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~----~gIrV 346 (429)
..+.....+ ........+..+|++||+|+.+|++.+++|+++ .||+|
T Consensus 142 ~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~v 221 (275)
T d1wmaa1 142 VRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILL 221 (275)
T ss_dssp HHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEE
T ss_pred eccccccchhhhhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 654221100 001122345678999999999999999999865 59999
Q ss_pred EEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhc-CCCcccCCceEEecCc
Q psy12836 347 NAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASL-DPSLENVSGKYFACYD 413 (429)
Q Consensus 347 n~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~-~~~~~~vtG~~i~~~g 413 (429)
|+|+||+|+|+|.+... ..+|||+|++++|++. .++..+++|+||..++
T Consensus 222 n~v~PG~v~T~m~~~~~------------------~~~pee~A~~~~~~a~~~~~~~~~~G~~~~~~~ 271 (275)
T d1wmaa1 222 NACCPGWVRTDMAGPKA------------------TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 271 (275)
T ss_dssp EEEECCSBCSTTTCTTC------------------SBCHHHHTHHHHHHHSCCTTCCCCCSCEEETTE
T ss_pred EEEecccccCCcccCcc------------------cCCHHHHHHHHHHHHcCChhhcCCCeEEEECCE
Confidence 99999999999976532 3589999999999874 4566788999998654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-41 Score=322.05 Aligned_cols=236 Identities=22% Similarity=0.253 Sum_probs=185.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEE---EEcChhHHHHHHHHHhh-hcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIM---ACRDLDKCEKARKEVVL-ESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil---~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.|+||||||++|||+++|++|+++|++|++ ++|+.+..++..+.... ...+.++..++||++|.++++++++++.
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~- 80 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT- 80 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT-
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc-
Confidence 479999999999999999999999997554 45665544433333322 1234579999999999999999999874
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.|++|+||||||..... .+.+.++|++++++|+.|++++++.++|+|+ +++.|+||++|
T Consensus 81 -~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~------------------~~~~G~Iv~is 141 (285)
T d1jtva_ 81 -EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMK------------------RRGSGRVLVTG 141 (285)
T ss_dssp -TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHH------------------HHTCEEEEEEE
T ss_pred -ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHH------------------HcCCCceEEEe
Confidence 38999999999987544 6689999999999999999999999999998 45679999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh-------
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW------- 368 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~------- 368 (429)
|.++..+. ++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|.+......+.
T Consensus 142 S~~g~~~~------------~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 209 (285)
T d1jtva_ 142 SVGGLMGL------------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDI 209 (285)
T ss_dssp EGGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCH
T ss_pred chhhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccch
Confidence 99998875 67889999999999999999999999999999999999999998765322111
Q ss_pred -HHHH------HHhHHhhhccCCHHHHHHHHHHHhcCC--CcccCCceEE
Q psy12836 369 -LSTV------VLKPLVWLFIKSPRQGAQTIVYASLDP--SLENVSGKYF 409 (429)
Q Consensus 369 -~~~~------~~~~~~~~~~~~peevA~~iv~l~~~~--~~~~vtG~~i 409 (429)
..+. .....+..+..+|||+|+++++++.++ ...+++|+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~~~ 259 (285)
T d1jtva_ 210 HTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERF 259 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCSTT
T ss_pred hHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCCCCeEEecHHHH
Confidence 1111 123455667899999999999999764 4567787654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=3.4e-40 Score=315.05 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=196.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc-ChhHHHHHHHHHhhhcCCceEEE-----------------EEeeCCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACR-DLDKCEKARKEVVLESKNKYVLC-----------------RKCDLAS 204 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R-~~~~~~~~~~~l~~~~~~~~v~~-----------------~~~Dls~ 204 (429)
-+||||||++|||+++|++|+++|++|++++| +.+.+++..+++....+. .... ..+|+++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPN-SAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCC-ceEEEEeecccccccccccccccccCCC
Confidence 48999999999999999999999999999876 456677777777665543 3333 4566999
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccCCCC--CCCCHHH--------------HHhhhcchhHHHHHHHHHHHHHHHhh
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVSGCR--KMLTEEK--------------IELQLGVNHMGHFLLTMLLLDKLQAN 268 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~--~~~~~~~--------------~~~~~~vN~~g~~~l~~~~~~~l~~~ 268 (429)
.++++++++++.+++|+||+||||||...+. .+.+.++ +...|.+|+.+++++++.+.+.+...
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 9999999999999999999999999987543 2333333 34578999999999999999887632
Q ss_pred hccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q psy12836 269 LSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNA 348 (429)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~ 348 (429)
. .+.+...++||+++|..+..+. ++..+|++||+|+++|+++||.||+++|||||+
T Consensus 162 ~------------~~~~~~~~~ii~~~s~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~ 217 (284)
T d1e7wa_ 162 P------------AKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNG 217 (284)
T ss_dssp C------------GGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred H------------HHhcCCCCcccccccccccCCc------------cceeeeccccccchhhhHHHHHHhCCccccccc
Confidence 1 1125567899999998877664 668899999999999999999999999999999
Q ss_pred EeCCCccCCcccCCCCCchhHHHHHHhHHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 349 VHPGIVNTDILRHSSYYDSWLSTVVLKPLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 349 V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
|+||++.+.. ... +...+......|. +|+.+|+|+|++++||+++ ++.++||+.|.+|||+++++
T Consensus 218 I~PG~t~~~~--~~~---~~~~~~~~~~~pl~~R~~~peeiA~~v~fL~S~-~s~~itG~~i~VDGG~sl~r 283 (284)
T d1e7wa_ 218 VGPGLSVLVD--DMP---PAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSS-KAKYITGTCVKVDGGYSLTR 283 (284)
T ss_dssp EEESSBCCGG--GSC---HHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCC
T ss_pred cccccccccc--cCC---HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCc-hhcCccCCeEEECcChhccC
Confidence 9999865543 221 3344455556664 8899999999999999965 58899999999999998875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-40 Score=310.20 Aligned_cols=245 Identities=15% Similarity=0.159 Sum_probs=206.9
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|+||++|||||+| |||+++|+.|+++|++|++++|+++..+.+ +++....+ ......+|+++..++..+++++.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQLG--SDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHhhcC--CcceeecccchHHHHHHHHHHhh
Confidence 47899999999998 899999999999999999999997655544 44444333 45677899999999999999999
Q ss_pred HhCCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCc
Q psy12836 217 KENKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPS 289 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 289 (429)
+.++++|++||||+..... .....+.+...+++|+.+.+.+++.+.+.+. +++
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 138 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--------------------PGS 138 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE--------------------EEE
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------CCc
Confidence 9999999999999886433 2345677888999999999999999887764 346
Q ss_pred EEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhH
Q psy12836 290 RIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWL 369 (429)
Q Consensus 290 ~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~ 369 (429)
.||++||.++..+. +...+|++||+|+++|++++|.||+++|||||+|+||+|+|++...... ....
T Consensus 139 ~Ii~iss~~~~~~~------------~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~ 205 (258)
T d1qsga_ 139 ALLTLSYLGAERAI------------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKD-FRKM 205 (258)
T ss_dssp EEEEEECGGGTSBC------------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTT-HHHH
T ss_pred EEEEecchhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccch-hhhH
Confidence 89999998887664 5678899999999999999999999999999999999999999876543 2333
Q ss_pred HHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccc
Q psy12836 370 STVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVD 420 (429)
Q Consensus 370 ~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~ 420 (429)
........|.+|+.+|||+|++++||+++ ++.++||+.|.+|||++....
T Consensus 206 ~~~~~~~~pl~R~~~peeia~~v~fL~s~-~s~~itG~~i~vDGG~~i~g~ 255 (258)
T d1qsga_ 206 LAHCEAVTPIRRTVTIEDVGNSAAFLCSD-LSAGISGEVVHVDGGFSIAAM 255 (258)
T ss_dssp HHHHHHHSTTSSCCCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGBCS
T ss_pred HHHHHhCCCCCCCcCHHHHHHHHHHHhCc-hhcCccCceEEECcCHHHhcC
Confidence 44556678889999999999999999965 588999999999999988754
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=5.2e-39 Score=301.44 Aligned_cols=237 Identities=20% Similarity=0.248 Sum_probs=185.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHH---HcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELA---KRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La---~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+.|+||||||++|||+++|++|+ ++|++|++++|+.++++++.+ +.... .++.+++||++|+++++++++++.+
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 77 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKNH--SNIHILEIDLRNFDAYDKLVADIEG 77 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence 46899999999999999999996 579999999999998887654 33333 3688999999999999999999854
Q ss_pred --hCCCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 218 --ENKKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 218 --~~g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
++++||+||||||+.... .+.+.++|++++++|+.|++++++.++|+|++....... .......|+||
T Consensus 78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~-------~~~~~~~g~ii 150 (248)
T d1snya_ 78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANES-------QPMGVGRAAII 150 (248)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT-------SCSSTTTCEEE
T ss_pred HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccc-------ccccccccccc
Confidence 678999999999986543 567889999999999999999999999999864321100 00134579999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+++|..+.... +..++..+|++||+|+.+|+++++.|++++||+||+|+||+|+|+|......
T Consensus 151 ~i~S~~g~~~~---------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~~~~-------- 213 (248)
T d1snya_ 151 NMSSILGSIQG---------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAP-------- 213 (248)
T ss_dssp EECCGGGCSTT---------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCTTCS--------
T ss_pred cccccccccCC---------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccccCC--------
Confidence 99999876542 1125678999999999999999999999999999999999999999865431
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.++++.++.++.++... ....+|++|..||..
T Consensus 214 ----------~~~~~~~~~i~~~i~~l-~~~~tG~~i~~dG~~ 245 (248)
T d1snya_ 214 ----------LDVPTSTGQIVQTISKL-GEKQNGGFVNYDGTP 245 (248)
T ss_dssp ----------BCHHHHHHHHHHHHHHC-CGGGTTCEECTTSCB
T ss_pred ----------CCchHHHHHHHHHHHhc-CccCCCcEEEECCeE
Confidence 12333333333333222 123589999998864
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=6.8e-39 Score=300.97 Aligned_cols=239 Identities=27% Similarity=0.307 Sum_probs=184.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|+.|+||||||++|||+++|++|+++|+ +|++++|+.++++++.+ . .+.++.+++||+++.++++++++++.+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~----~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS----I-KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT----C-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH----h-hCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999996 79999999988776432 2 234788999999999999999999998
Q ss_pred hCC--CeeEEEEccccCCC---CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 218 ENK--KINVLINNAGVSGC---RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 218 ~~g--~iD~lI~nAG~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
.++ +||+||||||+..+ ..+.+.++|+++|++|+.|++++++.++|+|++......... .....++++
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~-------~~~~~~~~i 148 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQ-------LSVSRAAVI 148 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSC-------CCTTTCEEE
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCcc-------ccceecccc
Confidence 876 49999999998644 256788999999999999999999999999986543211110 023468999
Q ss_pred EEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHH
Q psy12836 293 NVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTV 372 (429)
Q Consensus 293 ~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~ 372 (429)
+++|..+...... ....+.+..+|++||+|+.+|++.|+.|+++.||+||+|+||+|+|+|.....
T Consensus 149 ~~s~~~~~~~~~~-----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~~--------- 214 (250)
T d1yo6a1 149 TISSGLGSITDNT-----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNA--------- 214 (250)
T ss_dssp EECCGGGCSTTCC-----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------
T ss_pred ccccccccccCCc-----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCCC---------
Confidence 9998776654311 11123456789999999999999999999999999999999999999865321
Q ss_pred HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 373 VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 373 ~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
..+|||.|+.++..+..+. ...+|.+|..||.
T Consensus 215 ---------~~~~e~~a~~~~~~~~~~~-~~~sG~f~~~~g~ 246 (250)
T d1yo6a1 215 ---------ALTVEQSTAELISSFNKLD-NSHNGRFFMRNLK 246 (250)
T ss_dssp -------------HHHHHHHHHHHTTCC-GGGTTCEEETTEE
T ss_pred ---------CCCHHHHHHHHHHHHhcCC-CCCCeEEECCCCe
Confidence 2479999999999987654 3469999988763
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=9.1e-40 Score=319.09 Aligned_cols=246 Identities=15% Similarity=0.099 Sum_probs=196.2
Q ss_pred CCCEEEEEc--CCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC----------ceEEEEE---------
Q psy12836 141 RGKIVIVTG--ANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN----------KYVLCRK--------- 199 (429)
Q Consensus 141 ~gK~vLITG--assGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~----------~~v~~~~--------- 199 (429)
++|++|||| +++|||+++|++|+++|++|++++++................. .......
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 479999999 5579999999999999999999999876655444332221110 1122233
Q ss_pred -----------eeCCCHHHHHHHHHHHHHhCCCeeEEEEccccCCC----CCCCCHHHHHhhhcchhHHHHHHHHHHHHH
Q psy12836 200 -----------CDLASQESIRAFAEEVKKENKKINVLINNAGVSGC----RKMLTEEKIELQLGVNHMGHFLLTMLLLDK 264 (429)
Q Consensus 200 -----------~Dls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 264 (429)
+|+++.++++++++++.+.+|+||+||||||.... ..+.+.++|++.|++|+.+.+.++++++|+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 36668888999999999999999999999997643 256788999999999999999999999998
Q ss_pred HHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCC-cchhHHHHHHHHHHHHHHHHHhcC-C
Q psy12836 265 LQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDP-TQAYNQSKLANVLFTRELAKRLEG-T 342 (429)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~-~~~Y~aSKaal~~l~~~la~el~~-~ 342 (429)
|+ +.|+||++||.++..+. ++ ...|++||+|+++|+|.||.||++ +
T Consensus 161 m~--------------------~~GsIv~iss~~~~~~~------------p~y~~~y~asKaal~~ltr~lA~Ela~~~ 208 (329)
T d1uh5a_ 161 MK--------------------PQSSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNY 208 (329)
T ss_dssp EE--------------------EEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--------------------cccccccceeehhcccc------------cccchhhhhhhccccccchhhHHHHhccc
Confidence 85 24899999998887664 32 457999999999999999999986 6
Q ss_pred CeEEEEEeCCCccCCcccCC------------------------------------------CCCchhHHHHHHhHHhhh
Q psy12836 343 GITVNAVHPGIVNTDILRHS------------------------------------------SYYDSWLSTVVLKPLVWL 380 (429)
Q Consensus 343 gIrVn~V~PG~v~T~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~ 380 (429)
|||||+|+||+|+|++.+.. ....+...+......|++
T Consensus 209 gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 288 (329)
T d1uh5a_ 209 NIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLR 288 (329)
T ss_dssp CCEEEEEEECCCCCTTGGGCC------------------------------------------CHHHHHHHHHHHHSSSC
T ss_pred CcEEEEEecCcccchhhhcccchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCCC
Confidence 99999999999999543221 111233344455677889
Q ss_pred ccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 381 FIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 381 ~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
|..+|+|+|.+++||+|+ .++++||+.|.+|||++...
T Consensus 289 R~~~pedvA~~v~fLaSd-~s~~iTGq~i~VDGG~~~~g 326 (329)
T d1uh5a_ 289 QKLLSTDIGSVASFLLSR-ESRAITGQTIYVDNGLNIMF 326 (329)
T ss_dssp SCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCS
T ss_pred CCcCHHHHHHHHHHHhCc-hhCCccCCeEEECCCccccc
Confidence 999999999999999965 68999999999999987654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=4e-39 Score=309.64 Aligned_cols=255 Identities=14% Similarity=0.059 Sum_probs=200.7
Q ss_pred CCCCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC----------ceEEEEEee---
Q psy12836 137 ETSARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN----------KYVLCRKCD--- 201 (429)
Q Consensus 137 ~~~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~----------~~v~~~~~D--- 201 (429)
..+|+||++|||||+| |||+++|++|+++|++|++++|+................. ..-....+|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 5689999999999886 9999999999999999999999876544333322111100 011222333
Q ss_pred -----------------CCCHHHHHHHHHHHHHhCCCeeEEEEccccCC----CCCCCCHHHHHhhhcchhHHHHHHHHH
Q psy12836 202 -----------------LASQESIRAFAEEVKKENKKINVLINNAGVSG----CRKMLTEEKIELQLGVNHMGHFLLTML 260 (429)
Q Consensus 202 -----------------ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~----~~~~~~~~~~~~~~~vN~~g~~~l~~~ 260 (429)
.++..+++++++++.++||+||+||||||... +..+.+.++|++.+++|+.++++++++
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 34556678999999999999999999999753 235678999999999999999999999
Q ss_pred HHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc
Q psy12836 261 LLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE 340 (429)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~ 340 (429)
+++.+. ..|+++++++.+..... .+...+|+++|+++.++++.++.|++
T Consensus 163 ~~~~~~--------------------~~g~~~~~~~~~~~~~~-----------~~~~~~y~~aKaa~~~l~~~~a~e~~ 211 (297)
T d1d7oa_ 163 FLPIMN--------------------PGGASISLTYIASERII-----------PGYGGGMSSAKAALESDTRVLAFEAG 211 (297)
T ss_dssp HGGGEE--------------------EEEEEEEEECGGGTSCC-----------TTCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh--------------------cCCcceeeeehhhcccc-----------cccccceecccccccccccccchhcc
Confidence 887764 34677777776654432 14567899999999999999999996
Q ss_pred -CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 341 -GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 341 -~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
++|||||+|+||++.|++.+.... .+...+......|++|+.+|+|+|++++||+++ ++.++||+.|.+|||++...
T Consensus 212 ~~~gIrvN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~-~a~~itGq~i~vDGG~s~~G 289 (297)
T d1d7oa_ 212 RKQNIRVNTISAGPLGSRAAKAIGF-IDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSP-LASAITGATIYVDNGLNSMG 289 (297)
T ss_dssp HHHCCEEEEEEECCCBCCCSSCCSH-HHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSG-GGTTCCSCEEEESTTGGGCS
T ss_pred ccceEEecccccccccchhhhhccC-CHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCc-hhcCCcCceEEECcCHhhcC
Confidence 689999999999999999876542 233445566678889999999999999999965 58999999999999998877
Q ss_pred ccccc
Q psy12836 420 DGRFS 424 (429)
Q Consensus 420 ~~~~~ 424 (429)
.+..+
T Consensus 290 ~~~~~ 294 (297)
T d1d7oa_ 290 VALDS 294 (297)
T ss_dssp SCTTC
T ss_pred CCCCC
Confidence 65543
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-38 Score=294.30 Aligned_cols=233 Identities=22% Similarity=0.252 Sum_probs=192.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.|+||||||++|||+++|++|+++|++|++++|+.+. .+....++|+++...+..+.....+...
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~- 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEEAP- 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHHSC-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhcccc-
Confidence 4899999999999999999999999999999998642 2456778999999999999988877654
Q ss_pred eeEEEEccccCCC------CCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 222 INVLINNAGVSGC------RKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 222 iD~lI~nAG~~~~------~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
.+.++++++.... ....+.+.+++.+++|+.+++.+++.+.+.+.+.. .+.+++.|+||++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~------------~~~~~~~G~Ii~is 133 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENP------------PDAEGQRGVIVNTA 133 (241)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCC------------CCTTSCSEEEEEEC
T ss_pred ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh------------hhcccCceeeeeec
Confidence 4556666665322 24457789999999999999999999999876321 12256779999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|++||+|+.+|+|+||.|++++|||||+|+||+|+|++..... .........
T Consensus 134 S~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~---~~~~~~~~~ 198 (241)
T d1uaya_ 134 SVAAFEGQ------------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP---EKAKASLAA 198 (241)
T ss_dssp CTHHHHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC---HHHHHHHHT
T ss_pred chhhccCC------------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhh---hhHHHHHHh
Confidence 99998875 678899999999999999999999999999999999999999987754 222233334
Q ss_pred HHhh-hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 376 PLVW-LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 376 ~~~~-~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
..+. +|+.+|||+|++++||+++ .++||+.|.+|||+++.|
T Consensus 199 ~~~~~~R~g~pedvA~~v~fL~s~---~~iTG~~i~VDGG~~m~p 240 (241)
T d1uaya_ 199 QVPFPPRLGRPEEYAALVLHILEN---PMLNGEVVRLDGALRMAP 240 (241)
T ss_dssp TCCSSCSCCCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCCCC
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhC---CCCCCCEEEECCcccCCC
Confidence 4443 7899999999999999974 589999999999988654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=5.3e-38 Score=298.49 Aligned_cols=251 Identities=15% Similarity=0.089 Sum_probs=187.7
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANT--GIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGass--GIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|+||++|||||+| |||+++|++|+++|++|++++|+++ +++..+++..... ...+..+|+++.++++++++++.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~--~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCC--ceeEeeecccchhhHHHHHHHHH
Confidence 47899999999875 9999999999999999999999954 4445555655544 45667999999999999999999
Q ss_pred HhCCCeeEEEEccccCCCCC--CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 217 KENKKINVLINNAGVSGCRK--MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~--~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
+.+|++|++|||+|...... ....+..+..+..+....+.....+...+.+. .+..+.|+++
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~~ 142 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPL----------------LNNGASVLTL 142 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG----------------EEEEEEEEEE
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccc----------------cccCcceeee
Confidence 99999999999999865431 11112222223333333333333333332211 2233456666
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
||.+...+. +....|++||+|+.+++++++.|++++|||||+|+||++.|++....... +.......
T Consensus 143 s~~~~~~~~------------~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~-~~~~~~~~ 209 (274)
T d2pd4a1 143 SYLGSTKYM------------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF-RMILKWNE 209 (274)
T ss_dssp ECGGGTSBC------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH-HHHHHHHH
T ss_pred ccccccccc------------ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCch-HHHHHHHh
Confidence 666555443 56788999999999999999999999999999999999999998765432 33334444
Q ss_pred hHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccccccc
Q psy12836 375 KPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARVDGR 422 (429)
Q Consensus 375 ~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~~~~ 422 (429)
...|.+++.+|+|+|++++||+++ .+.++||+.|.+|||++......
T Consensus 210 ~~~p~~r~~~pedIA~~v~fL~S~-~s~~itG~~i~vDGG~~~~g~~~ 256 (274)
T d2pd4a1 210 INAPLRKNVSLEEVGNAGMYLLSS-LSSGVSGEVHFVDAGYHVMGMGA 256 (274)
T ss_dssp HHSTTSSCCCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGBSSCC
T ss_pred hhhhccCCcCHHHHHHHHHHHhCh-hhCCCcCceEEECCChhhccCCc
Confidence 566778999999999999999975 58999999999999998765544
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=8.4e-38 Score=295.35 Aligned_cols=245 Identities=17% Similarity=0.130 Sum_probs=194.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCC----CHHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLA----SQESIRAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls----~~~sv~~~~~~i~~ 217 (429)
.|+|||||++|||+++|++|+++|++|++++|+.++ .+++.+++...... .....++|+. +.+.++++++++.+
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAG-SAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCC-ceEEEecccccchhHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999998655 46667777666543 4555555543 46778899999999
Q ss_pred hCCCeeEEEEccccCCCCC-------------CCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 218 ENKKINVLINNAGVSGCRK-------------MLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~-------------~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
++|+||+||||||+..+.. ....+.+...+.+|+.+++...+...+.+......
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 147 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAW------------- 147 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------------------
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhcccccccccc-------------
Confidence 9999999999999875431 12245566778889999998888887766532211
Q ss_pred cCCCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY 364 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~ 364 (429)
....+.+++++|..+..+. ++..+|++||+|+++|++.+|.|++++|||||+|+||+++|++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~--- 212 (266)
T d1mxha_ 148 RSRNLSVVNLCDAMTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP--- 212 (266)
T ss_dssp -CCCEEEEEECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC---
T ss_pred ccccccchhhhhccccccC------------cchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC---
Confidence 3456788889988876654 6789999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHhHHhhhc-cCCHHHHHHHHHHHhcCCCcccCCceEEecCccccccc
Q psy12836 365 YDSWLSTVVLKPLVWLF-IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEARV 419 (429)
Q Consensus 365 ~~~~~~~~~~~~~~~~~-~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~~ 419 (429)
+...+.+...+|+++ +.+|||+|++++||+++ ++.++||+.|.+|||+.+.+
T Consensus 213 --~~~~~~~~~~~pl~r~~~~peeva~~v~fL~s~-~s~~itG~~i~vDGG~~l~~ 265 (266)
T d1mxha_ 213 --QETQEEYRRKVPLGQSEASAAQIADAIAFLVSK-DAGYITGTTLKVDGGLILAR 265 (266)
T ss_dssp --HHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGCC
T ss_pred --HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCc-hhCCccCCeEEECccHhhhC
Confidence 234445566667655 47999999999999975 47899999999999998865
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-37 Score=294.73 Aligned_cols=216 Identities=22% Similarity=0.230 Sum_probs=188.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|+||+|||||||+|||+++|++|+++|++|++++|+.++++++.+++..... ..+..+.+|+++.+.+..+.+.+.+.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999888766544 478889999999999999999999999
Q ss_pred CCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 220 KKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
|.+|+++||||..... .+.+.+++++++++|+.|++++++.++|+|++ +.|+||++||.
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~-------------------~~G~ii~isS~ 151 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ-------------------SNGSIVVVSSL 151 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------------HTCEEEEEEEG
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHh-------------------cCCcceEeccc
Confidence 9999999999986543 56789999999999999999999999999973 35999999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC--CCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG--TGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~--~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
++..+. ++..+|++||+|+++|+++|+.|+++ .||+||+|+||+|+|+|.++...
T Consensus 152 ~~~~~~------------p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~----------- 208 (269)
T d1xu9a_ 152 AGKVAY------------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVS----------- 208 (269)
T ss_dssp GGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSC-----------
T ss_pred hhcCCC------------CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhcc-----------
Confidence 998775 67899999999999999999999974 57999999999999998654321
Q ss_pred HHhhhccCCHHHHHHHHHHHhcC
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~ 398 (429)
..+.....+|+++|+.++.....
T Consensus 209 ~~~~~~~~~~e~~a~~i~~~~~~ 231 (269)
T d1xu9a_ 209 GIVHMQAAPKEECALEIIKGGAL 231 (269)
T ss_dssp GGGGGGCBCHHHHHHHHHHHHHT
T ss_pred CCccccCCCHHHHHHHHHHHhhc
Confidence 11223456899999999987644
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=1.6e-36 Score=287.02 Aligned_cols=242 Identities=15% Similarity=0.096 Sum_probs=187.4
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGA--NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGa--ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|+||++||||| ++|||+++|++|+++|++|++++|+.+++.+... +.. +.+...++||++++++++++++.+.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~---~~~-~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRL-PAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH---HHc-CCceeeEeeecccccccccccchhh
Confidence 479999999994 5799999999999999999999999877643222 222 2356778999999999999999987
Q ss_pred Hh---CCCeeEEEEccccCCCC-------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 217 KE---NKKINVLINNAGVSGCR-------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 217 ~~---~g~iD~lI~nAG~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
+. ++.+|++|||||..... .+.+.+++...+.+|..+.+...+...+.+
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 137 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIM--------------------- 137 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE---------------------
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhc---------------------
Confidence 65 56899999999975321 346778899999999999988887765432
Q ss_pred CCcEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC--
Q psy12836 287 APSRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-- 364 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-- 364 (429)
..+.+++++|.....+. +....|+++|+|+.+|+++++.|++++|||||+|+||+|+|++.+....
T Consensus 138 ~~~~~i~~~s~~~~~~~------------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~ 205 (268)
T d2h7ma1 138 NPGGSIVGMDFDPSRAM------------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGA 205 (268)
T ss_dssp EEEEEEEEEECCCSSCC------------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTT
T ss_pred ccccccccccccccccC------------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccch
Confidence 12344455554444433 6688999999999999999999999999999999999999998653221
Q ss_pred Cc-------hhHHHHHHhHHhhhc-cCCHHHHHHHHHHHhcCCCcccCCceEEecCcccccc
Q psy12836 365 YD-------SWLSTVVLKPLVWLF-IKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEAR 418 (429)
Q Consensus 365 ~~-------~~~~~~~~~~~~~~~-~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~~ 418 (429)
.. +...+......|+++ +.+|+|+|++++||++ +.+.++||+.|.+|||++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL~S-d~a~~iTG~~i~vDGG~~~~ 266 (268)
T d2h7ma1 206 LGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLS-DWLPATTGDIIYADGGAHTQ 266 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHS-SSCTTCCSEEEEESTTGGGC
T ss_pred hhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhC-chhcCccCCEEEECcCcccc
Confidence 00 111122233455555 8999999999999996 55889999999999998653
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-36 Score=283.39 Aligned_cols=221 Identities=16% Similarity=0.053 Sum_probs=181.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC-
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN- 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~- 219 (429)
+||+||||||++|||+++|++|+++|++|++++++.... ........+|.++.++++.+.+.+.+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLG 68 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999876421 1245566788888888888888887654
Q ss_pred -CCeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 220 -KKINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 220 -g~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
++||+||||||..... .+.+.++|+++|++|+.+++++++.++|+|+ +.|+||++|
T Consensus 69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~--------------------~~G~Iv~is 128 (236)
T d1dhra_ 69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK--------------------EGGLLTLAG 128 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE--------------------EEEEEEEEC
T ss_pred CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcc--------------------cccceeEEc
Confidence 4799999999975432 4456788999999999999999999999985 248999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
|.++..+. ++..+|++||+|+++|+++||.|++ ++|||||+|+||+++|+|.+.....
T Consensus 129 S~~~~~~~------------~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~-------- 188 (236)
T d1dhra_ 129 AKAALDGT------------PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE-------- 188 (236)
T ss_dssp CGGGGSCC------------TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTT--------
T ss_pred cHHHcCCc------------cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCcc--------
Confidence 99988765 6788999999999999999999998 5899999999999999986543211
Q ss_pred HhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec---Cccccc
Q psy12836 374 LKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC---YDRYEA 417 (429)
Q Consensus 374 ~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~---~gg~~~ 417 (429)
....++.+|+++|+.+.+|+++. ..+++|+.+.+ +|...+
T Consensus 189 ---~~~~~~~~pe~va~~~~~l~s~~-~~~i~G~~i~v~~~~g~t~~ 231 (236)
T d1dhra_ 189 ---ADFSSWTPLEFLVETFHDWITGN-KRPNSGSLIQVVTTDGKTEL 231 (236)
T ss_dssp ---SCGGGSEEHHHHHHHHHHHHTTT-TCCCTTCEEEEEEETTEEEE
T ss_pred ---chhhcCCCHHHHHHHHHHHhCCC-ccCCCCCeEEEEEECCEEEE
Confidence 11235668999999999999665 67899987654 454433
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.3e-36 Score=277.21 Aligned_cols=220 Identities=14% Similarity=0.051 Sum_probs=179.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH--hCC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK--ENK 220 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~--~~g 220 (429)
++||||||++|||+++|++|+++|++|++++|+.+... .....+.+|+.+.+......+.+.. .++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQGS 70 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc------------cccceeccccCchhHHHHHHHHHHHHhcCC
Confidence 45799999999999999999999999999999875311 1344567788888887777777666 568
Q ss_pred CeeEEEEccccCCCC---CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 221 KINVLINNAGVSGCR---KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
+||+||||||..... .+.+.+.|+.++++|+.++++++++++|+|+ +.|+||++||.
T Consensus 71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~--------------------~~g~Iv~isS~ 130 (235)
T d1ooea_ 71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK--------------------PGGLLQLTGAA 130 (235)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEE--------------------EEEEEEEECCG
T ss_pred CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccc--------------------cceEEEEeccH
Confidence 999999999975432 3345678999999999999999999999985 24899999999
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhc--CCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLE--GTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~--~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
++..+. ++..+|++||+|+++|+++|+.|++ +.||+||+|+||+++|++.+....
T Consensus 131 ~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~~----------- 187 (235)
T d1ooea_ 131 AAMGPT------------PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMP----------- 187 (235)
T ss_dssp GGGSCC------------TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHST-----------
T ss_pred HhcCCc------------ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhCc-----------
Confidence 988775 6789999999999999999999998 579999999999999998654321
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEec---Cccccc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC---YDRYEA 417 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~---~gg~~~ 417 (429)
.....++.+|+++|+.+++++.++....++|+.+.+ +|..+.
T Consensus 188 ~~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v~~~~g~~~~ 232 (235)
T d1ooea_ 188 NADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTENGTSTI 232 (235)
T ss_dssp TCCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTEEEE
T ss_pred CCccccCCCHHHHHHHHHHHhcCccccCCCceEEEEEeeCCEEEE
Confidence 111235678999999999777777778899999887 555444
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=1.3e-34 Score=271.95 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=166.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh-CC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE-NK 220 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~-~g 220 (429)
.|+||||||++|||+++|++|+++|++|++++|+.++ ..+|+++.+..+....++..+ .+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~ 61 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCC
Confidence 3899999999999999999999999999999997531 246999999888876666544 46
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccc-cchh--------hhhhcccCCCcEE
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSL-CNLI--------WYYVFQESAPSRI 291 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~-~~~~--------~~~~~~~~~~g~I 291 (429)
.+|++|||||+... .+.++....+|..+...+.+...+.+.+....... .+.. ........+.|++
T Consensus 62 ~id~lv~~Ag~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 62 GMDGLVLCAGLGPQ-----TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp CCSEEEECCCCCTT-----CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCcEEEEcCCCCCc-----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcE
Confidence 89999999997642 24567778899999999999999988743211000 0000 0001111123455
Q ss_pred EEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHH
Q psy12836 292 INVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLST 371 (429)
Q Consensus 292 V~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~ 371 (429)
++++|..+..+. .++..+|++||+|+++|+|+||.||+++|||||+|+||+|+|++.+...........
T Consensus 137 ~~i~s~~~~~~~-----------~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~ 205 (257)
T d1fjha_ 137 AKARAIVEHAGE-----------QGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGES 205 (257)
T ss_dssp HHHHHHHHTCCT-----------THHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------------
T ss_pred EEEeeehhccCC-----------CcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHH
Confidence 555554443332 134567999999999999999999999999999999999999998765332222222
Q ss_pred HHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 372 VVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 372 ~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
......|.+|+.+|+|+|++++||+++ +++++||+.|.+|||++
T Consensus 206 ~~~~~~PlgR~g~p~eva~~v~fL~S~-~s~~itG~~i~vDGG~t 249 (257)
T d1fjha_ 206 IAKFVPPMGRRAEPSEMASVIAFLMSP-AASYVHGAQIVIDGGID 249 (257)
T ss_dssp ---CCCSTTSCCCTHHHHHHHHHHTSG-GGTTCCSCEEEESTTHH
T ss_pred HHhcCCCCCCCcCHHHHHHHHHHHhCc-hhCCccCceEEeCCCcc
Confidence 122235789999999999999999965 58899999999999986
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.96 E-value=5.7e-29 Score=233.88 Aligned_cols=221 Identities=19% Similarity=0.195 Sum_probs=167.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh---hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL---DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~---~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|||||++|||+++|++|+++|+ +|++++|+. +..++..+++... +.++.++.||++|.++++++++++.+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~~~i~~ 86 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGIGD 86 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhhccccc
Confidence 46999999999999999999999999 699999975 3455555666443 35899999999999999999998765
Q ss_pred hCCCeeEEEEccccCCCC--CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 218 ENKKINVLINNAGVSGCR--KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~--~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
. +++|.+|||||..... .+.+.++++..+++|+.+++++.+++. ..+.++||++|
T Consensus 87 ~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~----------------------~~~~~~iv~~S 143 (259)
T d2fr1a1 87 D-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTR----------------------ELDLTAFVLFS 143 (259)
T ss_dssp T-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHT----------------------TSCCSEEEEEE
T ss_pred c-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhh----------------------ccCCceEeeec
Confidence 4 6899999999987654 667899999999999999998876532 44678999999
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK 375 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~ 375 (429)
|.++..+. ++..+|+++|+++++|++.++ ..|++|++|+||.+.++.+.... ..+.+..
T Consensus 144 S~a~~~g~------------~~~~~YaAaka~l~~la~~~~----~~Gi~v~~I~pg~~~~~g~~~~~-----~~~~~~~ 202 (259)
T d2fr1a1 144 SFASAFGA------------PGLGGYAPGNAYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAEGP-----VADRFRR 202 (259)
T ss_dssp EHHHHTCC------------TTCTTTHHHHHHHHHHHHHHH----HTTCCCEEEEECCBC-----------------CTT
T ss_pred chhhccCC------------cccHHHHHHHHhHHHHHHHHH----hCCCCEEECCCCcccCCccccch-----HHHHHHh
Confidence 99999886 678899999999988776665 46999999999988655432211 1111111
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
. -....+|+++++.+..++..++ ..+..+.+|.
T Consensus 203 ~--G~~~~~~~~~~~~l~~~l~~~~---~~~~v~~~d~ 235 (259)
T d2fr1a1 203 H--GVIEMPPETACRALQNALDRAE---VCPIVIDVRW 235 (259)
T ss_dssp T--TEECBCHHHHHHHHHHHHHTTC---SSCEECEECH
T ss_pred c--CCCCCCHHHHHHHHHHHHhCCC---ceEEEEeCcH
Confidence 1 0134689999999999986653 2344555543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.9e-19 Score=174.62 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=161.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-----HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-----KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-----~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|+||||||+|.||.+++++|+++|++|++++|... +++....+.. ....++.++++|++|.++++++++..
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH--TCNPKFHLHYGDLSDTSNLTRILREV- 77 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhh--hcCCCeEEEEeecCCHHHHHHHHhcc-
Confidence 389999999999999999999999999999998543 2222222211 12347889999999999999999876
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.+|+++|+|+...... +.++.+..+++|+.|+.+++.++...- ..+..++|++||
T Consensus 78 ----~~d~v~h~aa~~~~~~--~~~~~~~~~~~Nv~gt~nllea~~~~~-------------------~~~~~r~i~~SS 132 (357)
T d1db3a_ 78 ----QPDEVYNLGAMSHVAV--SFESPEYTADVDAMGTLRLLEAIRFLG-------------------LEKKTRFYQAST 132 (357)
T ss_dssp ----CCSEEEECCCCCTTTT--TTSCHHHHHHHHTHHHHHHHHHHHHTT-------------------CTTTCEEEEEEE
T ss_pred ----CCCEEEEeecccccch--hhhCHHHHHHHHHHHHHHHHHHHHHhC-------------------CCCCcEEEEEEc
Confidence 7899999999875432 335566778999999999988875321 224468999998
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh-
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK- 375 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~- 375 (429)
.+. +|.....++.+...+.+...|+.||.+.+.+++.+++.+ |+.+..+.|+.+-.|....... ...+...+..
T Consensus 133 ~~v-YG~~~~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~---~l~~~ilR~~~vyGp~~~~~~~-~~~i~~~~~~~ 207 (357)
T d1db3a_ 133 SEL-YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHESPRRGETFV-TRKITRAIANI 207 (357)
T ss_dssp GGG-GTTCCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSH-HHHHHHHHHHH
T ss_pred hhh-hCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEEeccccCCCCCcCCC-chHHHHHHHHH
Confidence 654 454444556666666778899999999999999988764 6889999999888875332210 1111111111
Q ss_pred ----H--Hhh------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 ----P--LVW------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ----~--~~~------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
+ +.+ .-+...+|+|++++.++..+ .|+.+++..+..
T Consensus 208 ~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~-----~~~~yni~sg~~ 255 (357)
T d1db3a_ 208 AQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE-----QPEDFVIATGVQ 255 (357)
T ss_dssp HTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS-----SCCCEEECCCCC
T ss_pred HhCCCceEEECCCCeeecceeechHHHHHHHHHhCC-----CCCeEEECCCCc
Confidence 0 000 11456899999999887543 344555554433
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.78 E-value=1.5e-20 Score=167.90 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=94.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+|+||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.... .+....+|+++.+++++++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~---- 90 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAV---- 90 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHT----
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHh----
Confidence 679999999999999999999999999999999999999999999988887654 3446789999999887664
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHH
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLT 258 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~ 258 (429)
+++|+||||||... ...+.+.|+..+++|+.+.++..
T Consensus 91 ---~~iDilin~Ag~g~--~~~~~e~~~~~~~~nv~~~~~~~ 127 (191)
T d1luaa1 91 ---KGAHFVFTAGAIGL--ELLPQAAWQNESSIEIVADYNAQ 127 (191)
T ss_dssp ---TTCSEEEECCCTTC--CCBCHHHHHTCTTCCEEEECCCS
T ss_pred ---cCcCeeeecCcccc--ccCCHHHHHhhhcceeehhHhhH
Confidence 57899999999743 45688999999999987766544
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.74 E-value=1.9e-17 Score=160.39 Aligned_cols=231 Identities=16% Similarity=0.087 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+||+||||||+|.||.+++++|+++|++|+.+.|+.++...................+..|+++.+++.+++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK------- 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT-------
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc-------
Confidence 5999999999999999999999999999999999988776655444334444455667789999887666543
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
..|+++|+|+..... .+ ....+..|+.|+.++++.+.. .....++|++||.++.
T Consensus 83 ~~~~v~~~a~~~~~~--~~---~~~~~~~nv~gt~~ll~~~~~---------------------~~~v~~~i~~SS~~~~ 136 (342)
T d1y1pa1 83 GAAGVAHIASVVSFS--NK---YDEVVTPAIGGTLNALRAAAA---------------------TPSVKRFVLTSSTVSA 136 (342)
T ss_dssp TCSEEEECCCCCSCC--SC---HHHHHHHHHHHHHHHHHHHHT---------------------CTTCCEEEEECCGGGT
T ss_pred cchhhhhhccccccc--cc---ccccccchhhhHHHHHHhhhc---------------------ccccccccccccceee
Confidence 579999999875422 22 344567899998888877652 2245799999997654
Q ss_pred cCCCC-cc------------------cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC
Q psy12836 301 RGTIN-KE------------------DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH 361 (429)
Q Consensus 301 ~~~~~-~~------------------~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~ 361 (429)
.+... .. ...+.....+..+|+.||.+.+.+++.+++... .++++.+++|+.+-.|....
T Consensus 137 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~~~~i~p~~v~Gp~~~~ 215 (342)
T d1y1pa1 137 LIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK-PHFTLNAVLPNYTIGTIFDP 215 (342)
T ss_dssp CCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEEEEESEEECCCSCT
T ss_pred ccCCCCCCCccccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcc-cccccceecccceeCCCCCc
Confidence 43211 10 011122233456799999999999999888764 56899999998876654322
Q ss_pred CCCCchhHHHHHHhHHh------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEe
Q psy12836 362 SSYYDSWLSTVVLKPLV------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFA 410 (429)
Q Consensus 362 ~~~~~~~~~~~~~~~~~------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~ 410 (429)
... ......+...+. ...+..++|+|++++.++..+. ..|.++.
T Consensus 216 ~~~--~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~---~~g~~~~ 271 (342)
T d1y1pa1 216 ETQ--SGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ---IERRRVY 271 (342)
T ss_dssp TTC--CCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTT---CCSCEEE
T ss_pred ccc--ccchHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHHHhhcCcc---ccceEEE
Confidence 111 001111111111 1114678999999988886653 3565543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.3e-16 Score=154.05 Aligned_cols=183 Identities=16% Similarity=0.077 Sum_probs=132.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.||||||+|.||.++++.|+++|++|++++|................ ..++.++++|++|.+.+.++++.. ++|
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d 75 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhcc-----CCC
Confidence 39999999999999999999999999999863221111111111111 236888999999999998888764 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+|+.... ..+.++.+..+++|+.|+.++++++.. .+..++|++||.+...+.
T Consensus 76 ~ViHlAa~~~~--~~~~~~~~~~~~~Nv~gt~nlL~~~~~----------------------~~v~~~i~~Ss~~vy~~~ 131 (338)
T d1udca_ 76 TVIHFAGLKAV--GESVQKPLEYYDNNVNGTLRLISAMRA----------------------ANVKNFIFSSSATVYGDQ 131 (338)
T ss_dssp EEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHH----------------------HTCCEEEEEEEGGGGCSC
T ss_pred EEEECCCccch--hhHHhCHHHHHHhHHHHHHHHHHHHHH----------------------hCCCEEEecCcceEEccc
Confidence 99999996532 123345667899999999998887763 234689999987765443
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
.............+...|+.+|.+.+.+.+....+. .++.+..+.|+.+-.+.
T Consensus 132 ~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~G~~ 184 (338)
T d1udca_ 132 PKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPVGAH 184 (338)
T ss_dssp CSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS--TTCEEEEEEECEEECCC
T ss_pred cccccccccccCCCcchHHHHHhhhhHHHHHHHhhc--cCCeEEEEeeccEEecc
Confidence 322222233345678899999999999998877764 46888888888776653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.8e-16 Score=153.20 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=152.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-----HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-----CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-----~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|+||||||+|.||.+++++|+++|++|+.++|.... ++....... .....++.++.+|++|.+.+.++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQ-AHIEGNMKLHYGDLTDSTCLVKIINEV-- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchh-hhccCCcEEEEeecCCchhhHHHHhhc--
Confidence 556999999999999999999999999999996431 111111111 111236889999999999999999876
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.++++++.|+..... ...+.....+++|+.|+.+++.++..+- ..+..++|++||.
T Consensus 79 ---~~~~v~~~~a~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-------------------~~~~~~~i~~SS~ 134 (347)
T d1t2aa_ 79 ---KPTEIYNLGAQSHVK--ISFDLAEYTADVDGVGTLRLLDAVKTCG-------------------LINSVKFYQASTS 134 (347)
T ss_dssp ---CCSEEEECCSCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHTT-------------------CTTTCEEEEEEEG
T ss_pred ---ccceeeeeeeccccc--hhhccchhhhhhHHHHHHHHHHHHHHcC-------------------CCCCcEEEEecch
Confidence 678889988865321 2334455668999999999888775432 1234589999986
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP- 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~- 376 (429)
+ .+|.....++.+...+.+...|+.||.+.+.+++.+++.+ |+.+..+.|+.+-.|....... .......+...
T Consensus 135 ~-vyg~~~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~---~~~~~ilr~~~vyGp~~~~~~~-~~~~~~~i~~~~ 209 (347)
T d1t2aa_ 135 E-LYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESPRRGANFV-TRKISRSVAKIY 209 (347)
T ss_dssp G-GTCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSH-HHHHHHHHHHHH
T ss_pred h-eecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEecceeCCCCCCCcc-ccccceeeehhh
Confidence 5 4454444556666667778899999999999999887764 6888889998777663222110 11111111111
Q ss_pred ---Hh---------hhccCCHHHHHHHHHHHhcCC
Q psy12836 377 ---LV---------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 ---~~---------~~~~~~peevA~~iv~l~~~~ 399 (429)
.+ ..-+...+|++++++.++...
T Consensus 210 ~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~ 244 (347)
T d1t2aa_ 210 LGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 244 (347)
T ss_dssp HTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS
T ss_pred cCCcceeecCCCcceeeeeEecHHHHHHHHHhhcC
Confidence 00 112457899999999998654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.70 E-value=1.8e-16 Score=151.51 Aligned_cols=222 Identities=14% Similarity=0.046 Sum_probs=152.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+||||||+|.||++++++|+++|++|+.++|...... ...+.......++.++.+|++|.+++.+++... ..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-----QP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcccCCcEEEEccccChHHhhhhhccc-----cc
Confidence 78999999999999999999999999999998653211 111222222346899999999999999888876 56
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
++++++|+...... ..+.....+++|+.|+.+++.++... ....++++.|| +...+
T Consensus 74 ~~~~~~a~~~~~~~--~~~~~~~~~~~n~~g~~~~l~~~~~~---------------------~~~~~~i~~Ss-~~~~~ 129 (321)
T d1rpna_ 74 QEVYNLAAQSFVGA--SWNQPVTTGVVDGLGVTHLLEAIRQF---------------------SPETRFYQAST-SEMFG 129 (321)
T ss_dssp SEEEECCSCCCHHH--HTTSHHHHHHHHTHHHHHHHHHHHHH---------------------CTTSEEEEEEE-GGGGC
T ss_pred cccccccccccccc--cccchHHHHhhhhhchHHHHHHHHHh---------------------CCCcccccccc-hhhcC
Confidence 78888887654221 12345677899999999988877532 22345666555 44555
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh------H
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK------P 376 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~------~ 376 (429)
........+.....+...|+.||.+.+.+.+.++.+. |+.+..+.|+.+..|....... ...+...+.+ +
T Consensus 130 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lr~~~vyGp~~~~~~~-~~~i~~~~~~~~~~~~~ 205 (321)
T d1rpna_ 130 LIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPLRGIEFV-TRKVTDAVARIKLGKQQ 205 (321)
T ss_dssp SCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTSCTTSH-HHHHHHHHHHHHTTSCS
T ss_pred cccCCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc---CCcEEEEEEecccCCCcccccc-HHHHHHHHHHHHhCCCC
Confidence 5444445555566778899999999999999988764 5888888998777664322210 0111111111 0
Q ss_pred -Hh------hhccCCHHHHHHHHHHHhcCC
Q psy12836 377 -LV------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 -~~------~~~~~~peevA~~iv~l~~~~ 399 (429)
+. ..-+...+|+|++++.++..+
T Consensus 206 ~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~ 235 (321)
T d1rpna_ 206 ELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235 (321)
T ss_dssp CEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred cEEECCCCeEEccEEeHHHHHHHHHHHhcC
Confidence 00 112467899999999998665
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.68 E-value=1e-16 Score=156.52 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=159.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.||||||+|.||.+++++|+++|++|++..++...... ...+.......++.++.+|++|.++++.+++.. ++|
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d 75 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSDISESNRYNFEHADICDSAEITRIFEQY-----QPD 75 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC-GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc-HHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-----CCC
Confidence 48999999999999999999999986554433211110 111222233347889999999999999998765 789
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+|+..... .+.++....+++|+.|+.++.+.+......... .+....++|++||.+.+...
T Consensus 76 ~VihlAa~~~~~--~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~-------------~~~~~~~~i~~SS~~vyg~~ 140 (361)
T d1kewa_ 76 AVMHLAAESHVD--RSITGPAAFIETNIVGTYALLEVARKYWSALGE-------------DKKNNFRFHHISTDEVYGDL 140 (361)
T ss_dssp EEEECCSCCCHH--HHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCH-------------HHHHHCEEEEEEEGGGGCCC
T ss_pred EEEECccccchh--hHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------cccCceEEEEeccceeeCCC
Confidence 999999875422 234455678999999999999998876542100 01234699999997755432
Q ss_pred CCcc--------cC-CCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 304 INKE--------DL-NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 304 ~~~~--------~l-~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
.... +. .+.....+...|+.||.+.+.+++.++..+ |+.+.++.|+.|-.|....... -+.+.....
T Consensus 141 ~~~~~~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~---~i~~~~lR~~~vyGp~~~~~~~-i~~~i~~~~ 216 (361)
T d1kewa_ 141 PHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYHFPEKL-IPLVILNAL 216 (361)
T ss_dssp CCGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTCCTTSH-HHHHHHHHH
T ss_pred ccCCccccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEecCceECcCCCcCcH-HHHHHHHHH
Confidence 2110 11 122334567889999999999999998764 6889999999887764332110 111212122
Q ss_pred hH--Hhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 375 KP--LVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 375 ~~--~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
.. +.. .-+...+|+|++++.++..+. .|..|++..+.
T Consensus 217 ~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~----~~~~~Ni~s~~ 262 (361)
T d1kewa_ 217 EGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK----AGETYNIGGHN 262 (361)
T ss_dssp HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC----TTCEEEECCCC
T ss_pred cCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCC----CCCeEEECCCC
Confidence 11 110 113578999999999986542 35566665543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=1.2e-15 Score=146.60 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=152.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh-----HHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD-----KCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~-----~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|+||||||+|.||++++++|+++|++|+.++|... +......... ......+.+..+|+++.+++...++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Di~~~~~~~~~~~~~-- 78 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPH-NVNKALMKLHYADLTDASSLRRWIDVI-- 78 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhh-hccccceEEEEccccCHHHHHHHHhhh--
Confidence 89999999999999999999999999999998532 2211111111 111236788899999999999988865
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
++|++||+|+..... ...+.....+.+|..+...+..++...... .....+++..||.
T Consensus 79 ---~~D~Vih~Aa~~~~~--~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ss~ 136 (339)
T d1n7ha_ 79 ---KPDEVYNLAAQSHVA--VSFEIPDYTADVVATGALRLLEAVRSHTID-----------------SGRTVKYYQAGSS 136 (339)
T ss_dssp ---CCSEEEECCSCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHHHHH-----------------HCCCCEEEEEEEG
T ss_pred ---ccchhhhcccccccc--ccccCccccccccccccchhhhhhhhcccc-----------------cccceeeeecccc
Confidence 789999999975422 233556678899999999998888755432 2233456665554
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhH-
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKP- 376 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~- 376 (429)
.. .+. ......+.....+...|+.||.+.+.+++..++.. |+.+..+.|+.|-.|....... ...+...+...
T Consensus 137 ~~-~~~-~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~~~~~~~-~~~i~~~~~~~~ 210 (339)
T d1n7ha_ 137 EM-FGS-TPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY---GLFACNGILFNHESPRRGENFV-TRKITRALGRIK 210 (339)
T ss_dssp GG-GTT-SCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCTTSH-HHHHHHHHHHHH
T ss_pred ee-ccc-CCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh---CCCEEEEEEccccCCCCCCCCC-cchhhHHHHHHh
Confidence 33 322 22334455556778899999999999998888764 6999999999887765332211 11111111110
Q ss_pred ------Hh------hhccCCHHHHHHHHHHHhcCC
Q psy12836 377 ------LV------WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 ------~~------~~~~~~peevA~~iv~l~~~~ 399 (429)
+. ..-+...+|+|+++..++..+
T Consensus 211 ~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~ 245 (339)
T d1n7ha_ 211 VGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQE 245 (339)
T ss_dssp HTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSS
T ss_pred cCCCCeEEeCCCCccccceeeehHHHHHHHHHhcC
Confidence 00 011456899999999998665
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=3.4e-15 Score=146.89 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=130.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh----------------HHHHHHHHHhhhcCCceEEEEEeeCCCH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD----------------KCEKARKEVVLESKNKYVLCRKCDLASQ 205 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~----------------~~~~~~~~l~~~~~~~~v~~~~~Dls~~ 205 (429)
||.||||||+|.||.+++++|+++|++|++++.-.. ...+......... +.++.++++|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCCCH
Confidence 789999999999999999999999999999862111 1111111121111 23688999999999
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEccccCCCC-CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcc
Q psy12836 206 ESIRAFAEEVKKENKKINVLINNAGVSGCR-KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQ 284 (429)
Q Consensus 206 ~sv~~~~~~i~~~~g~iD~lI~nAG~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (429)
+.++++++.. ++|+|||.|+..... ...+.+.....+.+|+.|+.+++..+...
T Consensus 80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~-------------------- 134 (393)
T d1i24a_ 80 EFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-------------------- 134 (393)
T ss_dssp HHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhh-----cchheeccccccccccccccccccccccccccccccHHHHHHHHh--------------------
Confidence 9999999876 799999999876433 33456667788999999999998877632
Q ss_pred cCCCcEEEEEcCcccccCCCC---cc------cC---CCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCC
Q psy12836 285 ESAPSRIINVSSVAHKRGTIN---KE------DL---NSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPG 352 (429)
Q Consensus 285 ~~~~g~IV~vSS~~~~~~~~~---~~------~l---~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG 352 (429)
....++++.||......... .. +. .......+...|+.||.+.+.+++.++.+. |+.+.++.|+
T Consensus 135 -~~~~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---~l~~~~lR~~ 210 (393)
T d1i24a_ 135 -GEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 210 (393)
T ss_dssp -CTTCEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEEC
T ss_pred -ccccceeeccccccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc---ceeeeecccc
Confidence 23346666666554322110 00 00 001123456789999999999999888764 6899999998
Q ss_pred CccCC
Q psy12836 353 IVNTD 357 (429)
Q Consensus 353 ~v~T~ 357 (429)
.+-.+
T Consensus 211 ~v~G~ 215 (393)
T d1i24a_ 211 VVYGV 215 (393)
T ss_dssp EEECS
T ss_pred cccCC
Confidence 77654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=3.8e-15 Score=143.72 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=158.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh----hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL----DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~----~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
..+-|++|||||+|.||.+++++|.++|++|+.++|.. ........ +........+.++.+|+.|.........
T Consensus 13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~d~~~~~~~~~- 90 (341)
T d1sb8a_ 13 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRS-LVSEKQWSNFKFIQGDIRNLDDCNNACA- 90 (341)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHH-HSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHH-hhhhcccCCeeEEeeccccccccccccc-
Confidence 34568999999999999999999999999999998632 22222211 1111111357889999999887654432
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
..+.+++.++..... .+.++....+++|+.|+.++++++. +.+..++|++
T Consensus 91 ------~~~~v~~~~a~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~~~----------------------~~~~~~~i~~ 140 (341)
T d1sb8a_ 91 ------GVDYVLHQAALGSVP--RSINDPITSNATNIDGFLNMLIAAR----------------------DAKVQSFTYA 140 (341)
T ss_dssp ------TCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHH----------------------HTTCSEEEEE
T ss_pred ------ccccccccccccccc--ccccCccchhheeehhHHHHHHHHH----------------------hcCCceEEEc
Confidence 568888887754321 2456677789999999999988775 3345699999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCch---hHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDS---WLST 371 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~---~~~~ 371 (429)
||.+.+ +.....+..+.....+...|+.||.+.+.+++.+++.. ++++..+.|+.+-.+.......... ....
T Consensus 141 SS~~vy-g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~ 216 (341)
T d1sb8a_ 141 ASSSTY-GDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTS 216 (341)
T ss_dssp EEGGGG-TTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTCCCCSTTCCHHHHHHH
T ss_pred ccceee-CCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh---CCCeEEEEeceeeccCcCCCCchhhhHHHHHH
Confidence 997764 33334445566666778899999999999999998765 6888999999887664332221111 1111
Q ss_pred HHHhH--Hhh-------hccCCHHHHHHHHHHHhcCCCcccCCceEEecCc
Q psy12836 372 VVLKP--LVW-------LFIKSPRQGAQTIVYASLDPSLENVSGKYFACYD 413 (429)
Q Consensus 372 ~~~~~--~~~-------~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~g 413 (429)
..... +.. .-+...+|+|.++..++..+. . ..|+.+....
T Consensus 217 ~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~-~-~~~~~~~~~~ 265 (341)
T d1sb8a_ 217 SMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGL-D-ARNQVYNIAV 265 (341)
T ss_dssp HHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCG-G-GCSEEEEESC
T ss_pred HHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccc-c-ccceeeeecc
Confidence 11111 110 124567999999998885542 2 3565555543
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=5.1e-16 Score=150.38 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=130.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|+||||||+|.||.+++++|+++|++|+++++................ ..++.++++|++|.++++.+++.. ++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 75 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEY-----KI 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHS-----CC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhcc-----CC
Confidence 799999999999999999999999999998753211111111111111 235778899999999999988754 68
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+|||+|+..... ...+..+..+.+|+.|+.++..++.. .+..++|++||.+.+..
T Consensus 76 d~VihlAa~~~~~--~~~~~~~~~~~~N~~~t~~ll~~~~~----------------------~~i~~~i~~SS~~vyg~ 131 (347)
T d1z45a2 76 DSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQ----------------------YNVSKFVFSSSATVYGD 131 (347)
T ss_dssp CEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHH----------------------HTCCEEEEEEEGGGGCC
T ss_pred CEEEEcccccccc--ccccCcccccccchhhhHHHHHHHHh----------------------cccceEEeecceeeecC
Confidence 9999999976422 12344566788999999999888753 23458999999776543
Q ss_pred CC---CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCcc
Q psy12836 303 TI---NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVN 355 (429)
Q Consensus 303 ~~---~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~ 355 (429)
.. ...++.+.....+...|+.||.+.+.+.+.+.... ..++.+..+.|+.+-
T Consensus 132 ~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~~~lR~~~v~ 186 (347)
T d1z45a2 132 ATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPI 186 (347)
T ss_dssp GGGSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEE
T ss_pred cccCCCCCccccccCCCCCChhHhHHHHHHHHHHHHHHhh-ccCCcEEEEeecceE
Confidence 22 22334445555677889999999999998887653 356777777776553
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.4e-15 Score=143.42 Aligned_cols=242 Identities=14% Similarity=0.010 Sum_probs=155.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEc------ChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACR------DLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R------~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
|.||||||+|.||.+++++|+++|++|+.+++ +........+.+... .+.++.++++|++|.+.+++++...
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~l~~~~~~~- 80 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-TGRSVEFEEMDILDQGALQRLFKKY- 80 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-HTCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh-cCCCcEEEEeecccccccccccccc-
Confidence 68899999999999999999999999999864 111111112222211 1246889999999999998888763
Q ss_pred HhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 217 KENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.+|+++|.|+..... .+.++....+++|+.|+.++..++. +.+..+++++||
T Consensus 81 ----~~~~i~h~Aa~~~~~--~~~~~p~~~~~~Nv~gt~~l~~~~~----------------------~~~v~~~i~~ss 132 (346)
T d1ek6a_ 81 ----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIMK----------------------AHGVKNLVFSSS 132 (346)
T ss_dssp ----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEEEE
T ss_pred ----ccccccccccccCcH--hhHhCHHHHHHhhhcccccccchhh----------------------hcCccccccccc
Confidence 789999999976432 2334456778999999888887764 334568999888
Q ss_pred cccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccC----CC-CCchhHHH
Q psy12836 297 VAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRH----SS-YYDSWLST 371 (429)
Q Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~----~~-~~~~~~~~ 371 (429)
....................+...|+.+|.+.+...+.++.. ..|+....+.|+.+-.+.... .. .....+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1ek6a_ 133 ATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMP 210 (346)
T ss_dssp GGGGCSCSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHH
T ss_pred ceeeeccccccccccccccccCChHHHHHHHHHHHHHHHHHh--ccCCceEEEeecceeccCCCCCcCccccccHHHHHH
Confidence 766544322222222223345678999999999888887654 357888888887665442111 00 00011111
Q ss_pred HHHhHHh--------------------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 372 VVLKPLV--------------------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 372 ~~~~~~~--------------------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.+..... ..-+..++|+|.++..++... .....|+.|++.++...
T Consensus 211 ~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~-~~~~~~~i~Ni~~~~~~ 275 (346)
T d1ek6a_ 211 YVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKL-KEQCGCRIYNLGTGTGY 275 (346)
T ss_dssp HHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHH-TTTCCEEEEEECCSCCE
T ss_pred HHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhcccc-ccccCceEEEeCCCCcc
Confidence 1111000 011468999999888775433 23346777887766543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.64 E-value=2.9e-15 Score=144.97 Aligned_cols=228 Identities=14% Similarity=0.021 Sum_probs=155.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++||+||||||+|.||.+++++|+++|++|++++|+..+.....+.... ...+.++.+|++|.+++.++++..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~---~~~i~~~~~Dl~d~~~l~~~~~~~---- 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREF---- 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc---ccCCeEEEeeccChHhhhhhhhhc----
Confidence 4789999999999999999999999999999999987654433332211 225788999999999999988876
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
.+|+++|.|+..... .+.+..+..+.+|+.|+.+++.++... .....+++.||...
T Consensus 79 -~~~~v~~~aa~~~~~--~~~~~~~~~~~~Nv~g~~n~l~~~~~~---------------------~~~~~~~~~s~~~~ 134 (356)
T d1rkxa_ 79 -QPEIVFHMAAQPLVR--LSYSEPVETYSTNVMGTVYLLEAIRHV---------------------GGVKAVVNITSDKC 134 (356)
T ss_dssp -CCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHHH---------------------CCCCEEEEECCGGG
T ss_pred -hhhhhhhhhcccccc--ccccCCccccccccccchhhhhhhhcc---------------------cccccccccccccc
Confidence 789999999875422 234556778899999999888877632 23345565555444
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC------CCeEEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEG------TGITVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~------~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
...........+...+.+...|+.+|.+.+.+++.++.++.. .++.+..+.|+.+-.|........-+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~ 214 (356)
T d1rkxa_ 135 YDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAF 214 (356)
T ss_dssp BCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHH
T ss_pred ccccccccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHH
Confidence 433323333334445567789999999999999998887643 47889999998776553211111111111211
Q ss_pred HhHHh--------hhccCCHHHHHHHHHHHhcC
Q psy12836 374 LKPLV--------WLFIKSPRQGAQTIVYASLD 398 (429)
Q Consensus 374 ~~~~~--------~~~~~~peevA~~iv~l~~~ 398 (429)
....+ ...+...+|+|.+++.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~ 247 (356)
T d1rkxa_ 215 EQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 247 (356)
T ss_dssp HTTCCEECSCTTCEECCEETHHHHHHHHHHHHH
T ss_pred hCCCceEEeeccccccccccccccchhhhhhhh
Confidence 11110 01123578999998877754
|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Ubiquitin ligase NEDD4 WWIII domain species: fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.63 E-value=2.8e-17 Score=100.92 Aligned_cols=33 Identities=15% Similarity=-0.060 Sum_probs=31.9
Q ss_pred ccccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 19 DTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+.||+|||++.+.+|++||+||+|+ +|||+|||
T Consensus 1 GpLP~GWe~~~d~~G~~Yyinh~t~---~T~w~~PR 33 (33)
T d2jmfa1 1 GPLPPGWEIRYTAAGERFFVDHNTR---RTTFEDPR 33 (33)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTC---CEESSCCC
T ss_pred CccCCCeeEEECCCCCEEEEECCCC---cEecCCCC
Confidence 4799999999999999999999999 99999997
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.2e-16 Score=137.98 Aligned_cols=200 Identities=11% Similarity=0.027 Sum_probs=131.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
|..|+|+||||+|+||++++++|+++|++|.++.|+.+++... ....+.++.+|++|.+++.++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~------ 66 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA------ 66 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhc------
Confidence 4578999999999999999999999999999999998875321 12357788999999998877765
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+.|++|+++|....... .+++..++.+++ +.++ +.+..++|++||...
T Consensus 67 -~~d~vi~~~g~~~~~~~---------~~~~~~~~~~l~----~aa~------------------~~~v~r~i~~ss~~~ 114 (205)
T d1hdoa_ 67 -GQDAVIVLLGTRNDLSP---------TTVMSEGARNIV----AAMK------------------AHGVDKVVACTSAFL 114 (205)
T ss_dssp -TCSEEEECCCCTTCCSC---------CCHHHHHHHHHH----HHHH------------------HHTCCEEEEECCGGG
T ss_pred -CCCEEEEEeccCCchhh---------hhhhHHHHHHHH----HHHH------------------hcCCCeEEEEeeeec
Confidence 46999999987543221 123344444444 3444 335579999998665
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCC-cccCCCCCchhHHHHHHhHHh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTD-ILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~-~~~~~~~~~~~~~~~~~~~~~ 378 (429)
..... ...+....|...|.+.+.+. ...|++...|.||.+... ....... . .....
T Consensus 115 ~~~~~--------~~~~~~~~~~~~~~~~e~~l-------~~~~~~~tiirp~~~~~~~~~~~~~~----~----~~~~~ 171 (205)
T d1hdoa_ 115 LWDPT--------KVPPRLQAVTDDHIRMHKVL-------RESGLKYVAVMPPHIGDQPLTGAYTV----T----LDGRG 171 (205)
T ss_dssp TSCTT--------CSCGGGHHHHHHHHHHHHHH-------HHTCSEEEEECCSEEECCCCCSCCEE----E----SSSCS
T ss_pred cCCCc--------cccccccccchHHHHHHHHH-------HhcCCceEEEecceecCCCCcccEEE----e----eCCCC
Confidence 43221 11133456777777665433 236899999999976432 2211110 0 00001
Q ss_pred hhccCCHHHHHHHHHHHhcCCCcccCCceEEec
Q psy12836 379 WLFIKSPRQGAQTIVYASLDPSLENVSGKYFAC 411 (429)
Q Consensus 379 ~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~ 411 (429)
...+.+.+|+|+.++.++.+++ ..|+.+..
T Consensus 172 ~~~~i~~~DvA~~~~~~l~~~~---~~g~~~~~ 201 (205)
T d1hdoa_ 172 PSRVISKHDLGHFMLRCLTTDE---YDGHSTYP 201 (205)
T ss_dssp SCSEEEHHHHHHHHHHTTSCST---TTTCEEEE
T ss_pred CCCcCCHHHHHHHHHHHhCCCC---CCCEEEec
Confidence 1234689999999999997764 24776543
|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Ubiquitin ligase NEDD4 WWIII domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=7.8e-17 Score=108.90 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=38.3
Q ss_pred eccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 14 TIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
+.|++++||+|||++.+.+|++||+||+|+ +|||+|||++.
T Consensus 5 ~~~~~~pLP~gWe~~~~~~G~~YY~nh~t~---~T~w~~Pr~~~ 45 (50)
T d1i5hw_ 5 DSNDLGPLPPGWEERTHTDGRVFFINHNIK---KTQWEDPRMQN 45 (50)
T ss_dssp SSSCCSSCSTTEEEEECTTSCEEEEETTTT---EEESSCTTTSC
T ss_pred CCCCCCCCCCCceEEECCCCCEEEEECCCC---CEeCCCCCCCC
Confidence 566777999999999999999999999999 99999999987
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.60 E-value=3e-14 Score=136.14 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=145.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH-HHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK-CEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~-~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
.||||||+|.||++++++|+++|++|+.+++-... .......+.. ..++.++.+|+++.+++.++++.. ++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~-----~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----MP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence 48999999999999999999999999998742211 1111222221 236788999999999999998876 68
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|++||+|+..... ...++.+..+++|+.|+.++++++.. .+..+.++.||.+...+
T Consensus 74 d~Vih~aa~~~~~--~~~~~~~~~~~~Nv~gt~nll~~~~~----------------------~~~~~~i~~sS~~~~~~ 129 (338)
T d1orra_ 74 DSCFHLAGQVAMT--TSIDNPCMDFEINVGGTLNLLEAVRQ----------------------YNSNCNIIYSSTNKVYG 129 (338)
T ss_dssp SEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHH----------------------HCTTCEEEEEEEGGGGT
T ss_pred ceEEeeccccccc--ccccChHHHHHHHHHHHHHHHHhhhc----------------------ccccccccccccccccc
Confidence 9999999876422 12345577889999999999887653 23345555565555444
Q ss_pred CCCcc----------------cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC--C
Q psy12836 303 TINKE----------------DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS--Y 364 (429)
Q Consensus 303 ~~~~~----------------~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~--~ 364 (429)
..... .......+.+...|+.+|...+.+....+..+. +....+.|..+..+...... .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 206 (338)
T d1orra_ 130 DLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG---LNTVVFRHSSMYGGRQFATYDQG 206 (338)
T ss_dssp TCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC---CEEEEEEECCEECTTCCCBTTBC
T ss_pred cccccccccccccccccccccCcccCCccccccccccccchhhhhhhhhhhccC---cccccccccceeecccccccccc
Confidence 32211 111122345678899999999999988888764 44433333322222111110 0
Q ss_pred CchhHHHHHHh-------HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 365 YDSWLSTVVLK-------PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 365 ~~~~~~~~~~~-------~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
....+...... ++. ..-+...+|++++++.++..+ ....|+.++..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~--~~~~~~~~~i~~~ 268 (338)
T d1orra_ 207 WVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANV--SKIRGNAFNIGGT 268 (338)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTH--HHHTTCEEEESSC
T ss_pred ccchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhcc--ccccCcccccccc
Confidence 00111111111 010 011345899999999988553 2356777666544
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.59 E-value=3.4e-15 Score=142.97 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=155.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEE------EEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVI------MACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vi------l~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.||||||+|.||.+++++|+++|++|. ..++...... ...+.......++.++.+|+++........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----- 74 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDAGLLAREL----- 74 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc--HhHhhhhhcCCCeEEEEeccccchhhhccc-----
Confidence 489999999999999999999998543 3332211000 011111222347889999999988666433
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
..+|.++|+|+..... ......+..+++|+.|+.++++.+. +.+..++|++||.
T Consensus 75 --~~~d~vi~~a~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~----------------------~~~~~~~I~~Ss~ 128 (322)
T d1r6da_ 75 --RGVDAIVHFAAESHVD--RSIAGASVFTETNVQGTQTLLQCAV----------------------DAGVGRVVHVSTN 128 (322)
T ss_dssp --TTCCEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEEEEG
T ss_pred --cccceEEeeccccccc--ccccchHHHhhhhHHHHHHHHHHHH----------------------HcCCceEEEeecc
Confidence 3679999999875422 2344556678999999999888775 3345789999986
Q ss_pred ccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHh--
Q psy12836 298 AHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLK-- 375 (429)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~-- 375 (429)
+.. +.....++.+.....+...|+.||.+.+.+++.++++. |+.+..+.|+.+-.|....... -+.+......
T Consensus 129 ~~y-g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~~~~~~-i~~~i~~~~~~~ 203 (322)
T d1r6da_ 129 QVY-GSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQHPEKL-IPLFVTNLLDGG 203 (322)
T ss_dssp GGG-CCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTCCTTSH-HHHHHHHHHTTC
T ss_pred eee-cCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEECcCCCcCcH-HHHHHHHHHcCC
Confidence 654 33444456666667788899999999999999998874 6999999999887764322110 1111111111
Q ss_pred HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 ~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
++. ..-+...+|+|++++.++..+. .|+.+++..+..
T Consensus 204 ~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~----~~~~~ni~~~~~ 247 (322)
T d1r6da_ 204 TLPLYGDGANVREWVHTDDHCRGIALVLAGGR----AGEIYHIGGGLE 247 (322)
T ss_dssp CEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC----TTCEEEECCCCE
T ss_pred CcEEecCCCeEEccEEHHHHHHHHHHHHhCCC----CCCeeEEeeccc
Confidence 111 0123578999999999996652 466666655533
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.6e-14 Score=135.88 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=122.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.|.||||||+|.||.+++++|+++|+.|+++.+.. .+|+.+.+.++++++.- .
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~-----~ 54 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----R 54 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhc-----C
Confidence 36899999999999999999999999988765321 25899999998887653 6
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
+|.++|+|+...... ....+....+++|+.|+.+++.++. +.+..++|++||.+.+.
T Consensus 55 ~d~v~~~a~~~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~a~----------------------~~~v~~~i~~SS~~vyg 111 (315)
T d1e6ua_ 55 IDQVYLAAAKVGGIV-ANNTYPADFIYQNMMIESNIIHAAH----------------------QNDVNKLLFLGSSCIYP 111 (315)
T ss_dssp CSEEEECCCCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HTTCCEEEEECCGGGSC
T ss_pred CCEEEEcchhccccc-cchhhHHHHHHHHHHHHHHHHHHHH----------------------HcCCCEEEEECCceEcC
Confidence 899999997754221 1234455568899999999887775 23446899999987654
Q ss_pred CCCCcccCCC-----CCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcc
Q psy12836 302 GTINKEDLNS-----ENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDIL 359 (429)
Q Consensus 302 ~~~~~~~l~~-----~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~ 359 (429)
+. ...++.+ ....++..+|+.||.+.+.+++.+.++. |+++..+.|+.|-.|..
T Consensus 112 ~~-~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyGp~~ 170 (315)
T d1e6ua_ 112 KL-AKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPHD 170 (315)
T ss_dssp TT-CCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTTC
T ss_pred CC-CCCCccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCCC
Confidence 32 2222222 1223345679999999999999998775 79999999998876643
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.2e-14 Score=138.14 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=151.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
.||||||+|.||++++++|+++| ++|+.+++........ ....++.++++|+++.+++.+.+.+ ++
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~-------~~~~~~~~i~~Di~~~~~~~~~~~~------~~ 68 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF-------LNHPHFHFVEGDISIHSEWIEYHVK------KC 68 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG-------TTCTTEEEEECCTTTCSHHHHHHHH------HC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh-------ccCCCeEEEECccCChHHHHHHHHh------CC
Confidence 48999999999999999999999 5899888765432221 1234789999999987666553321 47
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|++||+|+..... ...++....+.+|+.|+.+++..+.. .+.+.+++||.....+
T Consensus 69 d~Vih~a~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~-----------------------~~~~~~~~ss~~~~~~ 123 (342)
T d2blla1 69 DVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVK-----------------------YRKRIIFPSTSEVYGM 123 (342)
T ss_dssp SEEEECBCCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHH-----------------------TTCEEEEECCGGGGBT
T ss_pred Ccccccccccccc--ccccCCcccccccccccccccccccc-----------------------cccccccccccccccc
Confidence 9999999976432 12344556789999999999888742 2346677777665443
Q ss_pred CCCcc------cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC----CCchhHHH-
Q psy12836 303 TINKE------DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS----YYDSWLST- 371 (429)
Q Consensus 303 ~~~~~------~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~----~~~~~~~~- 371 (429)
..... .........+...|+.||.+.+.+++.+++.+ |+.+..+.|..+-.+...... ........
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~ 200 (342)
T d2blla1 124 CSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQL 200 (342)
T ss_dssp CCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHH
T ss_pred ccccccccccccccccccCCCcchhhhcccchhhhhhhhhccc---CceeEEeeccccccccccccccccccccccchHH
Confidence 32111 01112223456789999999999999998874 688999999888766433221 11111111
Q ss_pred --HHHh--HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 372 --VVLK--PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 372 --~~~~--~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.+.. ++. ..-+...+|+|++++.++..+. ....|+.|++..+
T Consensus 201 ~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~-~~~~g~~~Nig~~ 253 (342)
T d2blla1 201 ILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNP 253 (342)
T ss_dssp HHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCT
T ss_pred HHHHHhCCCccccCCCCeeeeecccccccceeeeehhhcc-ccCCCeEEEEecc
Confidence 1111 110 1125679999999999997653 3346888887543
|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Suppressor of deltex (Cg4244-pb) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.58 E-value=1.8e-16 Score=104.48 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=36.2
Q ss_pred ccccccccccchhhccCCceEEEEeceeeeeeceecccceec
Q psy12836 15 IEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTG 56 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (429)
.|..++||+|||++.+.+|++||+||+|+ +|||+|||++
T Consensus 7 ~d~~gpLP~GWe~~~d~~G~~Yyinh~t~---~T~w~~PR~q 45 (45)
T d1tk7a1 7 MDALGPLPDGWEKKIQSDNRVYFVNHKNR---TTQWEDPRTQ 45 (45)
T ss_dssp SSTTSSSSSSCCEEEETTTEEEEEETTTT---EEEEESCCCT
T ss_pred CCCCCCCCCCceEEECCCCCEEEEECCCC---CEECCCCCcC
Confidence 36678999999999999999999999999 9999999974
|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Yap65 ww domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.5e-16 Score=105.54 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=38.1
Q ss_pred eccccccccccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 14 TIEVEDTLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
|..+|.+||+|||++.+.+|++||+||+|+ +|||+|||.+.
T Consensus 2 d~~~~~~LP~GWe~~~d~~G~~Yyinh~t~---~T~w~~Pr~~~ 42 (46)
T d1jmqa_ 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQ---TTTWQDPRKAM 42 (46)
T ss_dssp CCCSSCCCCTTBCCBCCSSCCCBEEETTTT---EEESSCTTTSS
T ss_pred CCCccCCCCCCceEEECCCCCEEEEECCCC---CEecCCCCccc
Confidence 456788999999999999999999999999 99999999986
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.5e-15 Score=139.42 Aligned_cols=225 Identities=13% Similarity=0.042 Sum_probs=141.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|.||||||+|.||++++++|+++|++|++++|....-.+. +.......++.....|+.+. .+.++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~------------~~~~~ 66 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWIGHENFELINHDVVEP------------LYIEV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---TGGGTTCTTEEEEECCTTSC------------CCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHH---HHHhcCCCceEEEehHHHHH------------HHcCC
Confidence 7899999999999999999999999999998733211111 11111122344444454321 23468
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
|+|||+|+...... ..++..+.+++|+.|+.++++++.. .+ .++|++||.+.+.
T Consensus 67 d~VihlAa~~~~~~--~~~~~~~~~~~Nv~g~~~ll~~~~~----------------------~~-~k~I~~SS~~vy~- 120 (312)
T d2b69a1 67 DQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKR----------------------VG-ARLLLASTSEVYG- 120 (312)
T ss_dssp SEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHH----------------------HT-CEEEEEEEGGGGB-
T ss_pred CEEEECcccCCchh--HHhCHHHHHHHHHHHHHHHHHHHHH----------------------cC-CcEEEEEChheec-
Confidence 99999999754221 1234566789999999998877642 12 4899999865543
Q ss_pred CCCcccCC-----CCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-CchhHHHHHHh-
Q psy12836 303 TINKEDLN-----SENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-YDSWLSTVVLK- 375 (429)
Q Consensus 303 ~~~~~~l~-----~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-~~~~~~~~~~~- 375 (429)
.....+.. +..+..+...|+.||.+.+.+++.+++++ |+.+..+.|+.|-.|....... .-+.+......
T Consensus 121 ~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g 197 (312)
T d2b69a1 121 DPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQG 197 (312)
T ss_dssp SCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh---CCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcC
Confidence 32222222 22344577889999999999999998874 7999999999998765332210 01111111111
Q ss_pred -HHh-------hhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcccc
Q psy12836 376 -PLV-------WLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYE 416 (429)
Q Consensus 376 -~~~-------~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~ 416 (429)
++. ..-+...+|+|++++.++... ..| .|++..+..
T Consensus 198 ~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~----~~~-~~n~~~~~~ 241 (312)
T d2b69a1 198 EPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN----VSS-PVNLGNPEE 241 (312)
T ss_dssp CCEEEESSSCCEEECEEHHHHHHHHHHHHTSS----CCS-CEEESCCCE
T ss_pred CCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc----cCC-ceEecCCcc
Confidence 111 112356899999999888433 234 355555433
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.57 E-value=4.5e-15 Score=143.50 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=142.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.|.||||||+|.||.+++++|+++|++|.+++++.-.-......+ ......++.++.+|++|.+.+..++. .
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~-~~~~~~~i~~~~~Di~d~~~~~~~~~-------~ 73 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAILGDRVELVVGDIADAELVDKLAA-------K 73 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGT-GGGCSSSEEEEECCTTCHHHHHHHHT-------T
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHH-HHhhcCCeEEEEccCCCHHHHHHHHh-------h
Confidence 578999999999999999999999987655554310000000001 11223478899999999998888764 4
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccccc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKR 301 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~ 301 (429)
.|.++|.|+..... ....+.+..+++|+.|+.+++..+... +.++|++||.+.+.
T Consensus 74 ~~~v~~~a~~~~~~--~~~~~~~~~~~~N~~g~~nll~~~~~~-----------------------~~k~i~~ss~~vyg 128 (346)
T d1oc2a_ 74 ADAIVHYAAESHND--NSLNDPSPFIHTNFIGTYTLLEAARKY-----------------------DIRFHHVSTDEVYG 128 (346)
T ss_dssp CSEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHHHH-----------------------TCEEEEEEEGGGGC
T ss_pred hhhhhhhhhccccc--chhhCcccceeeehHhHHhhhhhhccc-----------------------cccccccccceEec
Confidence 57889998876432 123445677899999999988766421 24778887765443
Q ss_pred CCCC-----------cccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHH
Q psy12836 302 GTIN-----------KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLS 370 (429)
Q Consensus 302 ~~~~-----------~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~ 370 (429)
..+. .....+.....+...|+.+|.+.+.+++.+++++ |+++.++.|+.+-.|...........+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~vyGp~~~~~~~~~~~i~ 205 (346)
T d1oc2a_ 129 DLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQHIEKFIPRQIT 205 (346)
T ss_dssp CBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTCCTTSHHHHHHH
T ss_pred ccCccccccccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeecceeCCCCCccchhHHHHH
Confidence 2111 1122223344567789999999999999888764 7999999999887764322111011111
Q ss_pred HHHHh-HH-------hhhccCCHHHHHHHHHHHhcCC
Q psy12836 371 TVVLK-PL-------VWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 371 ~~~~~-~~-------~~~~~~~peevA~~iv~l~~~~ 399 (429)
..... +. ....+...+|+|++++.++..+
T Consensus 206 ~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~ 242 (346)
T d1oc2a_ 206 NILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG 242 (346)
T ss_dssp HHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC
T ss_pred HHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhc
Confidence 11111 01 0112457899999999887554
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=3e-14 Score=138.39 Aligned_cols=231 Identities=14% Similarity=0.023 Sum_probs=150.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
++..||||||+|.||.+++++|+++|++|+++++..... ..... ....+..+|+.+.+.+.++++
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~------~~~~~--~~~~~~~~D~~~~~~~~~~~~------- 78 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH------MTEDM--FCDEFHLVDLRVMENCLKVTE------- 78 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSS------SCGGG--TCSEEEECCTTSHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccc------hhhhc--ccCcEEEeechhHHHHHHHhh-------
Confidence 566799999999999999999999999999998754321 00111 134566789999887766553
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHK 300 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~ 300 (429)
.+|.+||.|+...... ...+.....+.+|+.++.+++.++. +.+..++|++||....
T Consensus 79 ~~d~Vih~a~~~~~~~-~~~~~~~~~~~~n~~gt~~ll~~~~----------------------~~~vk~~i~~SS~~~~ 135 (363)
T d2c5aa1 79 GVDHVFNLAADMGGMG-FIQSNHSVIMYNNTMISFNMIEAAR----------------------INGIKRFFYASSACIY 135 (363)
T ss_dssp TCSEEEECCCCCCCHH-HHTTCHHHHHHHHHHHHHHHHHHHH----------------------HTTCSEEEEEEEGGGS
T ss_pred cCCeEeeccccccccc-ccccccccccccccchhhHHHHhHH----------------------hhCccccccccccccc
Confidence 5799999998765321 1234556678889999888888775 3345799999997665
Q ss_pred cCCCCcc------cCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHH
Q psy12836 301 RGTINKE------DLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVL 374 (429)
Q Consensus 301 ~~~~~~~------~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~ 374 (429)
....... ...+.....+...|+.||.+.+.+++.+.+++ |+.+..+.|+.+-.+.................
T Consensus 136 ~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~ 212 (363)
T d2c5aa1 136 PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFGTWKGGREKAPAAFCR 212 (363)
T ss_dssp CGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTSCCSSSCCCHHHHHHH
T ss_pred cccccccccccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEeccCCccccccccccccccc
Confidence 4321110 00111223456789999999999999888764 79999999998876643222111111111111
Q ss_pred hH----H---------hhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccccc
Q psy12836 375 KP----L---------VWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRYEA 417 (429)
Q Consensus 375 ~~----~---------~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~~~ 417 (429)
.. . ...-+...+|++++++.++..+ .|..+++.++...
T Consensus 213 ~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~-----~~~~~ni~~~~~~ 263 (363)
T d2c5aa1 213 KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD-----FREPVNIGSDEMV 263 (363)
T ss_dssp HHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS-----CCSCEEECCCCCE
T ss_pred ccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC-----CCCeEEEecCCcc
Confidence 10 0 0112456899999999988543 3445566555443
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.55 E-value=1.7e-13 Score=134.04 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=130.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHH-cCCEEEEEEc---------ChhHHHHHHHHHhhh------cCCceEEEEEeeCCCHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAK-RKAKVIMACR---------DLDKCEKARKEVVLE------SKNKYVLCRKCDLASQE 206 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~-~G~~Vil~~R---------~~~~~~~~~~~l~~~------~~~~~v~~~~~Dls~~~ 206 (429)
..||||||+|.||.+++++|++ .|++|+++++ ..+..+.....+... ..+..+.++.+|++|.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 3699999999999999999986 6899999874 112222222222211 12346788899999999
Q ss_pred HHHHHHHHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccC
Q psy12836 207 SIRAFAEEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQES 286 (429)
Q Consensus 207 sv~~~~~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (429)
.+++++++. .++|+|+|.|+..... ...+.....+++|+.++..++..+. +.
T Consensus 83 ~l~~~~~~~----~~~d~ViH~Aa~~~~~--~~~~~~~~~~~~N~~~t~~~l~~~~----------------------~~ 134 (383)
T d1gy8a_ 83 FLNGVFTRH----GPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAML----------------------LH 134 (383)
T ss_dssp HHHHHHHHS----CCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----------------------HT
T ss_pred Hhhhhhhcc----ceeehhhccccccccc--ccccccccccccccccccccchhhh----------------------cc
Confidence 988888654 5789999999976432 1234455678899999888887765 33
Q ss_pred CCcEEEEEcCcccccCCCC------cccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCc
Q psy12836 287 APSRIINVSSVAHKRGTIN------KEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDI 358 (429)
Q Consensus 287 ~~g~IV~vSS~~~~~~~~~------~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~ 358 (429)
+..++++++|.+....... ..++.+.....+...|+.||.+.+.+++.+... .|+.+.++.|+.+-.+.
T Consensus 135 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~---~gl~~~~lR~~~vyG~~ 209 (383)
T d1gy8a_ 135 KCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEA---YGIKGICLRYFNACGAH 209 (383)
T ss_dssp TCCEEEEEEEGGGTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHH---HCCEEEEEEECEEECCC
T ss_pred CCcccccccccccccccccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHH---hCCCEEEEecceeeccC
Confidence 4567887777655443211 112333445567889999999999999988775 46999999998776554
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.7e-14 Score=130.41 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=132.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+..|++|+||||||||.||.+++++|+++|. +|++++|++...... . ...+....+|+.+.+++..
T Consensus 9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~------~--~~~i~~~~~D~~~~~~~~~---- 76 (232)
T d2bkaa1 9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE------A--YKNVNQEVVDFEKLDDYAS---- 76 (232)
T ss_dssp HHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG------G--GGGCEEEECCGGGGGGGGG----
T ss_pred HhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc------c--cceeeeeeecccccccccc----
Confidence 3457889999999999999999999999995 899999976432210 0 1245566678777654433
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEE
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINV 294 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~v 294 (429)
.+...|++||+||... .........++|+.++..+.+.+. ..+..++|++
T Consensus 77 ---~~~~~d~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~v~~fi~~ 126 (232)
T d2bkaa1 77 ---AFQGHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELAK----------------------AGGCKHFNLL 126 (232)
T ss_dssp ---GGSSCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEE
T ss_pred ---cccccccccccccccc-----cccchhhhhhhcccccceeeeccc----------------------ccCccccccC
Confidence 3346899999998642 233445567789888888777664 3456789999
Q ss_pred cCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCe-EEEEEeCCCccCCcccCCCCCchhHHHHH
Q psy12836 295 SSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGI-TVNAVHPGIVNTDILRHSSYYDSWLSTVV 373 (429)
Q Consensus 295 SS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gI-rVn~V~PG~v~T~~~~~~~~~~~~~~~~~ 373 (429)
||..... .....|+.+|...+...+. .|. ++..+.||.+-.+...... ...+...+
T Consensus 127 Ss~~~~~--------------~~~~~Y~~~K~~~E~~l~~-------~~~~~~~IlRP~~i~G~~~~~~~--~~~~~~~~ 183 (232)
T d2bkaa1 127 SSKGADK--------------SSNFLYLQVKGEVEAKVEE-------LKFDRYSVFRPGVLLCDRQESRP--GEWLVRKF 183 (232)
T ss_dssp CCTTCCT--------------TCSSHHHHHHHHHHHHHHT-------TCCSEEEEEECCEEECTTGGGSH--HHHHHHHH
T ss_pred Ccccccc--------------CccchhHHHHHHhhhcccc-------ccccceEEecCceeecCCCcCcH--HHHHHHHH
Confidence 9976543 2345799999987754432 233 5778999988766433211 12222222
Q ss_pred HhHHh----hhccCCHHHHHHHHHHHhcCCC
Q psy12836 374 LKPLV----WLFIKSPRQGAQTIVYASLDPS 400 (429)
Q Consensus 374 ~~~~~----~~~~~~peevA~~iv~l~~~~~ 400 (429)
...++ .....+++|+|++++.++..+.
T Consensus 184 ~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~ 214 (232)
T d2bkaa1 184 FGSLPDSWASGHSVPVVTVVRAMLNNVVRPR 214 (232)
T ss_dssp HCSCCTTGGGGTEEEHHHHHHHHHHHHTSCC
T ss_pred hhccCCcccCCCeEEHHHHHHHHHHHHhcCc
Confidence 22211 1234567999999999987663
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.46 E-value=1.1e-13 Score=125.23 Aligned_cols=216 Identities=14% Similarity=-0.005 Sum_probs=133.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCE--EEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAK--VIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~--Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
-++||||||+|+||++++++|+++|+. |+...|++++.... ..++.++.+|+++.+++.++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~------ 67 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADSINPAFQ------ 67 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHHHHHHHT------
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc---------cCCcEEEEeeeccccccccccc------
Confidence 479999999999999999999999964 66677887654322 1246678999999998887764
Q ss_pred CCeeEEEEccccCCCC-----------CCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCC
Q psy12836 220 KKINVLINNAGVSGCR-----------KMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAP 288 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~-----------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (429)
.+|.+||+|+..... .............+|+.++..+...... ...
T Consensus 68 -~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 124 (252)
T d2q46a1 68 -GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----------------------AGV 124 (252)
T ss_dssp -TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----------------------HTC
T ss_pred -cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccc----------------------ccc
Confidence 569999999865321 1111233455667888887776655432 234
Q ss_pred cEEEEEcCcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchh
Q psy12836 289 SRIINVSSVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSW 368 (429)
Q Consensus 289 g~IV~vSS~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~ 368 (429)
+.....|+.....+.... .......|...+.+.. .+.. ..|+++..++||.+-.+...........
T Consensus 125 ~~~~~~s~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~---~~~~~~~ilRp~~v~g~~~~~~~~~~~~ 190 (252)
T d2q46a1 125 KHIVVVGSMGGTNPDHPL-------NKLGNGNILVWKRKAE----QYLA---DSGTPYTIIRAGGLLDKEGGVRELLVGK 190 (252)
T ss_dssp SEEEEEEETTTTCTTCGG-------GGGGGCCHHHHHHHHH----HHHH---HSSSCEEEEEECEEECSCTTSSCEEEES
T ss_pred cccccccccccCCCCccc-------ccccccchhhhhhhhh----hhhh---cccccceeecceEEECCCcchhhhhhcc
Confidence 677777765443322100 0012233444444322 2222 3579999999998866643222100000
Q ss_pred HHHHHHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCccc
Q psy12836 369 LSTVVLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDRY 415 (429)
Q Consensus 369 ~~~~~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg~ 415 (429)
. .... .....+.+++|+|++++.++.+++ ..|+.|++.+..
T Consensus 191 ~-~~~~--~~~~~~i~~~Dva~a~~~~l~~~~---~~g~~~~i~~~~ 231 (252)
T d2q46a1 191 D-DELL--QTDTKTVPRADVAEVCIQALLFEE---AKNKAFDLGSKP 231 (252)
T ss_dssp T-TGGG--GSSCCEEEHHHHHHHHHHHTTCGG---GTTEEEEEEECC
T ss_pred C-cccc--cCCCCeEEHHHHHHHHHHHhCCcc---ccCcEEEEeeCC
Confidence 0 0000 001124578999999999997764 368888776543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.24 E-value=1.3e-10 Score=107.52 Aligned_cols=190 Identities=21% Similarity=0.204 Sum_probs=125.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCeeE
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKINV 224 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD~ 224 (429)
||||||||.||.+++++|.++|++|+.++|+. +|++|.++++++++.. ++|+
T Consensus 4 IlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~-----~~d~ 55 (281)
T d1vl0a_ 4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEK-----KPNV 55 (281)
T ss_dssp EEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHc-----CCCE
Confidence 89999999999999999999999999998742 4899999999988865 6899
Q ss_pred EEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCCC
Q psy12836 225 LINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGTI 304 (429)
Q Consensus 225 lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~~ 304 (429)
+||+|+..... ......+..+..|......+...... ....+++.||... .+..
T Consensus 56 vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~-----------------------~~~~~~~~ss~~v-~~~~ 109 (281)
T d1vl0a_ 56 VINCAAHTAVD--KCEEQYDLAYKINAIGPKNLAAAAYS-----------------------VGAEIVQISTDYV-FDGE 109 (281)
T ss_dssp EEECCCCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHH-----------------------HTCEEEEEEEGGG-SCSC
T ss_pred EEeeccccccc--cccccchhhccccccccccccccccc-----------------------cccccccccccee-eecc
Confidence 99999875422 12233455566777666655544432 1245666665443 3333
Q ss_pred CcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh------
Q psy12836 305 NKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV------ 378 (429)
Q Consensus 305 ~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 378 (429)
...+..+.....+...|+.+|.+.+.+.+.. +.....+.|+.+-.+.... ...+.......-+
T Consensus 110 ~~~~~~e~~~~~~~~~~~~~k~~~e~~~~~~-------~~~~~i~R~~~vyG~~~~~----~~~~~~~~~~~~~~~~~~~ 178 (281)
T d1vl0a_ 110 AKEPITEFDEVNPQSAYGKTKLEGENFVKAL-------NPKYYIVRTAWLYGDGNNF----VKTMINLGKTHDELKVVHD 178 (281)
T ss_dssp CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHH-------CSSEEEEEECSEESSSSCH----HHHHHHHHHHCSEEEEESS
T ss_pred ccccccccccccchhhhhhhhhHHHHHHHHh-------CCCccccceeEEeCCCccc----ccchhhhhccCCceeecCC
Confidence 3344445555677889999998877655432 4567789999886553211 1111111111100
Q ss_pred -hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 -WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 -~~~~~~peevA~~iv~l~~~~ 399 (429)
..-+...+|+++++..++..+
T Consensus 179 ~~~~~i~v~D~~~~~~~~~~~~ 200 (281)
T d1vl0a_ 179 QVGTPTSTVDLARVVLKVIDEK 200 (281)
T ss_dssp CEECCEEHHHHHHHHHHHHHHT
T ss_pred ceeccchhhhhhhhhhhhhhhc
Confidence 112457899999999998554
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.20 E-value=2.7e-11 Score=112.90 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=99.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.||||||+|.||.+++++|.++|..| .++++... +.+|++|.+.++++++.. ++|
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~-----~~D 56 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-------------------FCGDFSNPKGVAETVRKL-----RPD 56 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-------------------SCCCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-------------------ccCcCCCHHHHHHHHHHc-----CCC
Confidence 48999999999999999999998644 44443211 246999999999988876 689
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
+|||+||...... +.+..+..+++|+.++..+..++. ..+.+++++||..... .
T Consensus 57 ~Vih~Aa~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~-----------------------~~~~~~~~~ss~~~~~-~ 110 (298)
T d1n2sa_ 57 VIVNAAAHTAVDK--AESEPELAQLLNATSVEAIAKAAN-----------------------ETGAWVVHYSTDYVFP-G 110 (298)
T ss_dssp EEEECCCCCCHHH--HTTCHHHHHHHHTHHHHHHHHHHT-----------------------TTTCEEEEEEEGGGSC-C
T ss_pred EEEEecccccccc--cccCccccccccccccccchhhhh-----------------------cccccccccccccccc-C
Confidence 9999999764321 223445677889988888777652 3446788887765443 3
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHH
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTR 333 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~ 333 (429)
....+..+.....+...|+.+|.+.+.+.+
T Consensus 111 ~~~~~~~E~~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 111 TGDIPWQETDATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp CTTCCBCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCccccccCCCchHhhhhhhhhhhHH
Confidence 334445555566678899999998776554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.19 E-value=1.2e-11 Score=115.94 Aligned_cols=213 Identities=11% Similarity=0.017 Sum_probs=119.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
++||||||+|.||++++++|+++|++|+++.|+.........+.........+.++++|++|.+++.+.+. ..
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~-------~~ 76 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK-------QV 76 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT-------TC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc-------Cc
Confidence 45999999999999999999999999999999754321111111111112357788999999988877664 45
Q ss_pred eEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccC
Q psy12836 223 NVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRG 302 (429)
Q Consensus 223 D~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~ 302 (429)
+.++++++.... ..|..+...++..+. +....++++.||......
T Consensus 77 ~~~~~~~~~~~~-------------~~~~~~~~~~l~~a~----------------------~~~~~~~v~~Ss~g~~~~ 121 (312)
T d1qyda_ 77 DVVISALAGGVL-------------SHHILEQLKLVEAIK----------------------EAGNIKRFLPSEFGMDPD 121 (312)
T ss_dssp SEEEECCCCSSS-------------STTTTTHHHHHHHHH----------------------HSCCCSEEECSCCSSCTT
T ss_pred chhhhhhhhccc-------------ccchhhhhHHHHHHH----------------------HhcCCcEEEEeeccccCC
Confidence 788888875432 123333333333332 233456666666433221
Q ss_pred CCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCC-------CchhHHHHHHh
Q psy12836 303 TINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSY-------YDSWLSTVVLK 375 (429)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~-------~~~~~~~~~~~ 375 (429)
. ......+...|..+|.....+ .. ..|+.+..+.||.+..+....... ..... ..+..
T Consensus 122 ~-------~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 186 (312)
T d1qyda_ 122 I-------MEHALQPGSITFIDKRKVRRA----IE---AASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKV-LIYGD 186 (312)
T ss_dssp S-------CCCCCSSTTHHHHHHHHHHHH----HH---HTTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEE-CCBTT
T ss_pred C-------cccccchhhhhhHHHHHHHHh----hc---ccccceEEeccceeecCCccchhhHHHHhhhccccc-ccccc
Confidence 1 111123345566666655433 22 246778888888774332211100 00000 00000
Q ss_pred HHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 376 PLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 376 ~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.-....+.+++|+|++++.++.+++ ..++.++...++
T Consensus 187 g~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~~~~~~~ 223 (312)
T d1qyda_ 187 GNVKGIWVDEDDVGTYTIKSIDDPQ--TLNKTMYIRPPM 223 (312)
T ss_dssp SCSEEEEECHHHHHHHHHHHTTCGG--GSSSEEECCCGG
T ss_pred cccccceeeHHHHHHHHHHHhcCcc--ccCceEEEeCCC
Confidence 1111235789999999999997763 233444444443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.17 E-value=1.6e-11 Score=109.68 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=116.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
-|++|||||||.||++++++|+++|+ +|+...|+... ...++ ..+..|..++. ....
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~------------~~~~~---~~~~~d~~~~~------~~~~ 60 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------------EHPRL---DNPVGPLAELL------PQLD 60 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------------CCTTE---ECCBSCHHHHG------GGCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh------------hcccc---cccccchhhhh------hccc
Confidence 38999999999999999999999997 67766765421 01122 34555544321 1234
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
+.+|.+|+++|..... ...-+...++|+.++..+++.+. +.+..+++++||..+
T Consensus 61 ~~~d~vi~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~v~~~i~~Ss~~~ 114 (212)
T d2a35a1 61 GSIDTAFCCLGTTIKE----AGSEEAFRAVDFDLPLAVGKRAL----------------------EMGARHYLVVSALGA 114 (212)
T ss_dssp SCCSEEEECCCCCHHH----HSSHHHHHHHHTHHHHHHHHHHH----------------------HTTCCEEEEECCTTC
T ss_pred cchheeeeeeeeeccc----cccccccccchhhhhhhcccccc----------------------ccccccccccccccc
Confidence 5789999999865211 11224567788888888777653 345679999998665
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCe-EEEEEeCCCccCCcccCCCCCchhHHHHHHhHHh
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGI-TVNAVHPGIVNTDILRHSSYYDSWLSTVVLKPLV 378 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gI-rVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
.. .....|..+|...+...+ ..+. +...+.|+.+..+...... ...+...+...++
T Consensus 115 ~~--------------~~~~~y~~~K~~~E~~l~-------~~~~~~~~I~Rp~~v~G~~~~~~~--~~~~~~~~~~~~~ 171 (212)
T d2a35a1 115 DA--------------KSSIFYNRVKGELEQALQ-------EQGWPQLTIARPSLLFGPREEFRL--AEILAAPIARILP 171 (212)
T ss_dssp CT--------------TCSSHHHHHHHHHHHHHT-------TSCCSEEEEEECCSEESTTSCEEG--GGGTTCCCC----
T ss_pred cc--------------ccccchhHHHHHHhhhcc-------ccccccceeeCCcceeCCcccccH--HHHHHHHHhhccC
Confidence 32 235679999987765433 2343 6788999998655321100 0000000000000
Q ss_pred -hhccCCHHHHHHHHHHHhcCC
Q psy12836 379 -WLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 379 -~~~~~~peevA~~iv~l~~~~ 399 (429)
.......+|+|++++.++.++
T Consensus 172 ~~~~~i~v~DvA~ai~~~~~~~ 193 (212)
T d2a35a1 172 GKYHGIEACDLARALWRLALEE 193 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEHHHHHHHHHHHHcCC
Confidence 012247899999999999665
|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Mitotic rotamase PIN1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.9e-12 Score=78.72 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=29.8
Q ss_pred cccccchhhccC-CceEEEEeceeeeeeceecccce
Q psy12836 20 TLRSALWELSSG-AGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
+||+|||++..+ .|++||+||.|+ .|||++|.
T Consensus 1 ~LP~GW~~~~d~~~G~~YY~n~~T~---~T~W~~Pt 33 (34)
T d1pina1 1 KLPPGWEKRMSRSSGRVYYFNHITN---ASQWERPS 33 (34)
T ss_dssp CCCTTEEEEECTTSCCEEEEETTTC---CEESSCSC
T ss_pred CcCCCcEEEECCCCCCEEEEECCCC---CEEccCCC
Confidence 699999999986 699999999999 99999994
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.98 E-value=3.7e-10 Score=104.79 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH--HHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK--ARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~--~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|+||||||+|.||++++++|+++|++|++++|+...... ....+.... ...+.++.+|+.+..+..+.++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~------ 75 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK------ 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhh------
Confidence 4679999999999999999999999999999997543211 111121111 2346778899999988777665
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
..+.++++++..
T Consensus 76 -~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 -NVDVVISTVGSL 87 (307)
T ss_dssp -TCSEEEECCCGG
T ss_pred -hceeeeeccccc
Confidence 458888888753
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.94 E-value=1.3e-09 Score=104.53 Aligned_cols=208 Identities=13% Similarity=0.046 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHH-HHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESI-RAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv-~~~~~~i~~~~ 219 (429)
+.|+|+||||||.||.+++++|+++|++|+++.|+.++... ..+.. ...+..+++|+.|..++ +.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~---~~~v~~~~gD~~d~~~~~~~a~------- 69 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA---IPNVTLFQGPLLNNVPLMDTLF------- 69 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT---STTEEEEESCCTTCHHHHHHHH-------
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc---cCCCEEEEeeCCCcHHHHHHHh-------
Confidence 46899999999999999999999999999999998766432 22221 12578889999986543 3332
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCccc
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAH 299 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~ 299 (429)
...|.++++..... ..|+....+++.++. +.+..++++.||...
T Consensus 70 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~aa~----------------------~agv~~~v~~Ss~~~ 113 (350)
T d1xgka_ 70 EGAHLAFINTTSQA--------------GDEIAIGKDLADAAK----------------------RAGTIQHYIYSSMPD 113 (350)
T ss_dssp TTCSEEEECCCSTT--------------SCHHHHHHHHHHHHH----------------------HHSCCSEEEEEECCC
T ss_pred cCCceEEeeccccc--------------chhhhhhhHHHHHHH----------------------HhCCCceEEEeeccc
Confidence 35677776643221 112223333333332 223456677777554
Q ss_pred ccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCCCC-c-hhHHHH-----
Q psy12836 300 KRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSSYY-D-SWLSTV----- 372 (429)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~~~-~-~~~~~~----- 372 (429)
...... .....|..+|.....+.+ ..++....+.||....+........ . ......
T Consensus 114 ~~~~~~----------~~~~~~~~~k~~~~~~~~-------~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (350)
T d1xgka_ 114 HSLYGP----------WPAVPMWAPKFTVENYVR-------QLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWH 176 (350)
T ss_dssp GGGTSS----------CCCCTTTHHHHHHHHHHH-------TSSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEE
T ss_pred cccCCc----------ccchhhhhhHHHHHHHHH-------hhccCceeeeeceeeccccccccccccccccccccceee
Confidence 332211 234457778876654433 2457778888886644332111100 0 000000
Q ss_pred --HHhHHhhhccCCHHHHHHHHHHHhcCCCcccCCceEEecCcc
Q psy12836 373 --VLKPLVWLFIKSPRQGAQTIVYASLDPSLENVSGKYFACYDR 414 (429)
Q Consensus 373 --~~~~~~~~~~~~peevA~~iv~l~~~~~~~~vtG~~i~~~gg 414 (429)
.....+.......+|+|+++..++.++. +...|+++...+.
T Consensus 177 ~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~-~~~~G~~~~~~g~ 219 (350)
T d1xgka_ 177 APFDPDIPLPWLDAEHDVGPALLQIFKDGP-QKWNGHRIALTFE 219 (350)
T ss_dssp ESSCTTSCEEEECHHHHHHHHHHHHHHHCH-HHHTTCEEEECSE
T ss_pred ecccCCCcceEEEeHHHHHHHHHHHHhCCh-hhcCCeEEEEeCC
Confidence 0000111111224789999998886542 3457888777653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=2.5e-09 Score=99.45 Aligned_cols=213 Identities=15% Similarity=0.075 Sum_probs=118.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
||||||+|.||.+++++|+++|+ .|+.+++-... .+... +.. . . .+|..+.+........ ...+..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~-~~~~~-~~~-~---~----~~~~~~~~~~~~~~~~-~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-TKFVN-LVD-L---N----IADYMDKEDFLIQIMA-GEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG-GGGHH-HHT-S---C----CSEEEEHHHHHHHHHT-TCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCc-chhhc-ccc-c---c----hhhhccchHHHHHHhh-hhcccchh
Confidence 79999999999999999999997 47766532211 11111 110 0 0 1233333332222211 12345788
Q ss_pred EEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCcccccCC
Q psy12836 224 VLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSVAHKRGT 303 (429)
Q Consensus 224 ~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~~~~~~~ 303 (429)
++++.|+...... ...+.....|+.++..+...+... . -++++.||.....+.
T Consensus 71 ~i~~~aa~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~----------------------~-i~~v~~ss~~~~~~~ 123 (307)
T d1eq2a_ 71 AIFHEGACSSTTE----WDGKYMMDNNYQYSKELLHYCLER----------------------E-IPFLYASSAATYGGR 123 (307)
T ss_dssp EEEECCSCCCTTC----CCHHHHHHHTHHHHHHHHHHHHHH----------------------T-CCEEEEEEGGGGTTC
T ss_pred hhhhhcccccccc----cccccccccccccccccccccccc----------------------c-ccccccccccccccc
Confidence 9999887654322 123445566777777666554421 2 245555555554433
Q ss_pred CCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCCccCCcccCCC---CCchhHHHHHHh-H---
Q psy12836 304 INKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVHPGIVNTDILRHSS---YYDSWLSTVVLK-P--- 376 (429)
Q Consensus 304 ~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~PG~v~T~~~~~~~---~~~~~~~~~~~~-~--- 376 (429)
............+...|+.+|.+.+.+++.++.+ .++.+..+.|..+-.|...... .....+.+.+.. .
T Consensus 124 -~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~---~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (307)
T d1eq2a_ 124 -TSDFIESREYEKPLNVYGYSKFLFDEYVRQILPE---ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPK 199 (307)
T ss_dssp -CSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGG---CSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-----
T ss_pred -cccccccccccccccccccccchhhhhccccccc---cccccccccceeEeecccccccccccccccccccccccccee
Confidence 2222222333466788999999999998888665 5678888888877655332111 000111111111 0
Q ss_pred ------HhhhccCCHHHHHHHHHHHhcCC
Q psy12836 377 ------LVWLFIKSPRQGAQTIVYASLDP 399 (429)
Q Consensus 377 ------~~~~~~~~peevA~~iv~l~~~~ 399 (429)
.....+...+|++.++..++..+
T Consensus 200 ~~~g~~~~~r~~~~v~d~~~~~~~~~~~~ 228 (307)
T d1eq2a_ 200 LFEGSENFKRDFVYVGDVADVNLWFLENG 228 (307)
T ss_dssp --------CBCEEEHHHHHHHHHHHHHHC
T ss_pred eecCccceeeeeeecccHHHHHHHHhhhc
Confidence 00112456889999999888543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.85 E-value=6.1e-13 Score=116.80 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN 192 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~ 192 (429)
+.|+||+|+||+++|+.|+++|++|++.+|+++++++..+++......
T Consensus 3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~ 50 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGD 50 (212)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSS
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 567788899999999999999999999999999999999988765543
|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Formin binding protein FBP28 domain species: Domestic mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.9e-09 Score=67.24 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=30.3
Q ss_pred cccccchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 20 TLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
..+..|+|..+++||+||+|+.|+ .|||++|..
T Consensus 3 ~~~s~W~e~~~~~Gr~YY~N~~T~---~s~We~P~e 35 (37)
T d2rm0w1 3 TAVSEWTEYKTADGKTYYYNNRTL---ESTWEKPQE 35 (37)
T ss_dssp CCSCCEEEEECTTCCEEEEETTTT---EEESSCCSS
T ss_pred CCccCCEEEECCCCCEEEEECCCC---CEeCCCccc
Confidence 357899999999999999999999 999999963
|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Huntingtin-interacting protein HYPA/FBP11 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=3.6e-08 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=26.3
Q ss_pred ccchhhccCCceEEEEeceeeeeeceecccc
Q psy12836 23 SALWELSSGAGRVKYYDCMTYVYLSFQSGTI 53 (429)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (429)
+.|.|-.+++||+||+|..|+ .|||+.|
T Consensus 1 S~W~e~~~~~G~~YYyN~~T~---eS~We~P 28 (28)
T d1ywia1 1 SMWTEHKSPDGRTYYYNTETK---QSTWEKP 28 (28)
T ss_dssp CCEEEEEETTTEEEEEETTTT---EEEESCC
T ss_pred CccEEEECCCCCEEEeECCCC---CEecCCC
Confidence 359999999999999999999 9999988
|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Splicing factor prp40 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=3.8e-08 Score=64.11 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=30.1
Q ss_pred cccchhhccCCceEEEEeceeeeeeceecccceecC
Q psy12836 22 RSALWELSSGAGRVKYYDCMTYVYLSFQSGTIVTGG 57 (429)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (429)
..+|.+..+++||+||+|+.|+ .|||+.|+.-+
T Consensus 13 ~~~W~e~~~~~Gr~YYyN~~T~---es~We~P~~~k 45 (46)
T d1o6wa2 13 ENGWKAAKTADGKVYYYNPTTR---ETSWTIPAFEK 45 (46)
T ss_dssp HHTCEEEECTTCCEEEEETTTT---EEESSCCCCCC
T ss_pred cCCCeEEECCCCCEEEEECCCC---CEecCCCcccc
Confidence 4689999999999999999999 99999998653
|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Splicing factor prp40 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=6e-08 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=26.4
Q ss_pred ccchhhccCCceEEEEeceeeeeeceecccc
Q psy12836 23 SALWELSSGAGRVKYYDCMTYVYLSFQSGTI 53 (429)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (429)
+.|.|-.++|||+||+|..|+ .|||+.|
T Consensus 2 s~W~e~~~~~G~~YYyN~~T~---eS~WekP 29 (29)
T d1o6wa1 2 SIWKEAKDASGRIYYYNTLTK---KSTWEKP 29 (29)
T ss_dssp CCEEEEECTTCCEEEEETTTT---EEESSCC
T ss_pred CccEEEECCCCCEEEeECCCC---CEecCCC
Confidence 469999999999999999999 9999987
|
| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.5e-07 Score=54.80 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=28.6
Q ss_pred cccccchhhccCCceEEEEeceeeeeeceecccce
Q psy12836 20 TLRSALWELSSGAGRVKYYDCMTYVYLSFQSGTIV 54 (429)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (429)
.|||||++-....| .||-+--|. +|||++|.
T Consensus 2 dLPpGW~ki~D~~G-~YYWHiptG---ttQwe~P~ 32 (33)
T d2ho2a1 2 DLPAGWMRVQDTSG-TYYWHIPTG---TTQWEPPG 32 (33)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTT---EEESSCCC
T ss_pred CCCCcceeeecCCC-ceEEEecCC---cccccCCC
Confidence 59999999888888 999999999 99999985
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.9e-05 Score=67.85 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=64.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHH---HHhhhcCCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARK---EVVLESKNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~---~l~~~~~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
..+++||+|+|.|+ ||.|++++..|++.|. +++++.|+.++.+++.. ++.... ......+|+.+.+++....
T Consensus 13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 88 (182)
T d1vi2a1 13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---DCVVTVTDLADQQAFAEAL 88 (182)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCHHHHHHHH
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---CcceEeeecccccchhhhh
Confidence 45789999999999 7999999999999998 68999998776665443 333333 2335577999988776554
Q ss_pred HHHHHhCCCeeEEEEccccC
Q psy12836 213 EEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~ 232 (429)
. ..|++||+....
T Consensus 89 ~-------~~diiIN~Tp~G 101 (182)
T d1vi2a1 89 A-------SADILTNGTKVG 101 (182)
T ss_dssp H-------TCSEEEECSSTT
T ss_pred c-------ccceeccccCCc
Confidence 3 569999997543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.79 E-value=6.4e-06 Score=70.52 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.-.|++|||+||+||+|....+-....|++|+.+++++++.+.+.+ + +...+ .|-++. ..+....+ .
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-l----Ga~~v----i~~~~~--~~~~~~~~--~ 95 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-L----GAKEV----LAREDV--MAERIRPL--D 95 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-T----TCSEE----EECC-----------C--C
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-c----cccee----eecchh--HHHHHHHh--h
Confidence 3458899999999999999998888899999999999988765432 2 11122 132221 11222111 2
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
.+++|+++.+.|..
T Consensus 96 ~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 96 KQRWAAAVDPVGGR 109 (176)
T ss_dssp SCCEEEEEECSTTT
T ss_pred ccCcCEEEEcCCch
Confidence 35899999998853
|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: WW domain-binding protein 4, WBP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2.4e-06 Score=53.07 Aligned_cols=29 Identities=21% Similarity=0.075 Sum_probs=26.9
Q ss_pred cchhhccCCceEEEEeceeeeeeceeccccee
Q psy12836 24 ALWELSSGAGRVKYYDCMTYVYLSFQSGTIVT 55 (429)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (429)
.|.|-.+++|++||+|..|+ .|||+.|.-
T Consensus 2 ~W~e~~~~~G~~YYyN~~T~---eS~We~P~~ 30 (38)
T d2dk1a1 2 RWVEGITSEGYHYYYDLISG---ASQWEKPEG 30 (38)
T ss_dssp CEEECCCSTTCCCEEESSSC---CEESSCCTT
T ss_pred CCeEEECCCCCEEEEECCCC---CEecCCChh
Confidence 58999999999999999999 999999953
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=6.8e-05 Score=63.54 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+||+|++|...++.....|++|+.+++++++.+.+. ++ +...+ .|.++.+-.+++.+.. ...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~----Ga~~v----i~~~~~~~~~~i~~~t--~~~ 96 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QN----GAHEV----FNHREVNYIDKIKKYV--GEK 96 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT----TCSEE----EETTSTTHHHHHHHHH--CTT
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccc-cc----Ccccc----cccccccHHHHhhhhh--ccC
Confidence 5889999999999999999988889999999999887765432 22 21222 3766655444433333 223
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|+++.+.|
T Consensus 97 g~d~v~d~~g 106 (174)
T d1yb5a2 97 GIDIIIEMLA 106 (174)
T ss_dssp CEEEEEESCH
T ss_pred CceEEeeccc
Confidence 6999999876
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.70 E-value=4.6e-05 Score=65.14 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+|++|||+||+||+|.+.++-....|++|+.++++.++.+...+. .. ..+ +|-.+.+..+...+.. ..+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga-~~v----i~~~~~~~~~~~~~~~--~~~ 97 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF-DAA----FNYKTVNSLEEALKKA--SPD 97 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC-SEE----EETTSCSCHHHHHHHH--CTT
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh-hhh----cccccccHHHHHHHHh--hcC
Confidence 589999999999999999999999999999999998876543321 21 111 3444544444443332 234
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++++.|.
T Consensus 98 Gvd~v~D~vG~ 108 (182)
T d1v3va2 98 GYDCYFDNVGG 108 (182)
T ss_dssp CEEEEEESSCH
T ss_pred CCceeEEecCc
Confidence 79999999873
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.67 E-value=4.5e-05 Score=63.92 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
++++|.++|.|+ |++|..+++.|..+|+ +|.++.|+.++.++..+++.. . . . +.+++.+.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-----~--~--~---~~~~~~~~l~---- 83 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-----E--A--V---RFDELVDHLA---- 83 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-----E--E--C---CGGGHHHHHH----
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-----c--c--c---cchhHHHHhc----
Confidence 689999999998 9999999999999998 699999999998887776521 1 1 1 2233333333
Q ss_pred hCCCeeEEEEccccCCCCCCCCHHHHH
Q psy12836 218 ENKKINVLINNAGVSGCRKMLTEEKIE 244 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~~~~~~~~~~ 244 (429)
..|++|++.+...+ -.+.+.++
T Consensus 84 ---~~Divi~atss~~~--ii~~~~i~ 105 (159)
T d1gpja2 84 ---RSDVVVSATAAPHP--VIHVDDVR 105 (159)
T ss_dssp ---TCSEEEECCSSSSC--CBCHHHHH
T ss_pred ---cCCEEEEecCCCCc--cccHhhhH
Confidence 56999999875432 24444443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.65 E-value=5.3e-05 Score=63.84 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+|.|+|.|| |.+|+.+|+.|+++|++|++++|+.+++++..+++ . .......+..+.......+.
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----~--~~~~~~~~~~~~~~~~~~i~------- 66 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----Q--HSTPISLDVNDDAALDAEVA------- 66 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----T--TEEEEECCTTCHHHHHHHHT-------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----c--ccccccccccchhhhHhhhh-------
Confidence 3689999987 99999999999999999999999999888765543 2 23444556666555555443
Q ss_pred CeeEEEEcc
Q psy12836 221 KINVLINNA 229 (429)
Q Consensus 221 ~iD~lI~nA 229 (429)
..|.++...
T Consensus 67 ~~~~~i~~~ 75 (182)
T d1e5qa1 67 KHDLVISLI 75 (182)
T ss_dssp TSSEEEECS
T ss_pred ccceeEeec
Confidence 346666543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.62 E-value=5.2e-05 Score=65.30 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=55.5
Q ss_pred CC-EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH-HhC
Q psy12836 142 GK-IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK-KEN 219 (429)
Q Consensus 142 gK-~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~-~~~ 219 (429)
|+ +++++||+||+|.+.++-.-..|++|+.+.|+.++.++..+.+++.+.. .+ +.-|-.+..+....+.++. ...
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad-~v--i~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT-QV--ITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS-EE--EEHHHHHCGGGHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc-EE--EeccccchhHHHHHHHHHHhhcc
Confidence 54 5555799999999998888888999999999887777666665554432 22 1111111122233333333 345
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|+++.+.|.
T Consensus 106 ~~vdvv~D~vg~ 117 (189)
T d1gu7a2 106 GEAKLALNCVGG 117 (189)
T ss_dssp CCEEEEEESSCH
T ss_pred CCceEEEECCCc
Confidence 689999998763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.59 E-value=9.2e-05 Score=62.32 Aligned_cols=82 Identities=23% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+++|+| +|+||...++.+...|++|+++++++++++.+.+ + .. ... +..|- ..++.....+++.+..|
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~---ga--~~~-~~~~~-~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C---GA--DVT-LVVDP-AKEEESSIIERIRSAIG 96 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T---TC--SEE-EECCT-TTSCHHHHHHHHHHHSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c---CC--cEE-Eeccc-cccccchhhhhhhcccc
Confidence 467899997 5899999999888999999999999998765533 2 11 111 12222 22233444455555444
Q ss_pred -CeeEEEEcccc
Q psy12836 221 -KINVLINNAGV 231 (429)
Q Consensus 221 -~iD~lI~nAG~ 231 (429)
.+|++|.++|.
T Consensus 97 ~g~D~vid~~g~ 108 (170)
T d1e3ja2 97 DLPNVTIDCSGN 108 (170)
T ss_dssp SCCSEEEECSCC
T ss_pred cCCceeeecCCC
Confidence 78999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=7.4e-05 Score=63.66 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh--
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE-- 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~-- 218 (429)
.|++|||+||+|++|...++.+...|++|++++++.++.+.+. +.+. .. ..|-.+.+-.+ ++.+.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~----~~Ga-~~----vi~~~~~~~~~----~v~~~t~ 91 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGV-EY----VGDSRSVDFAD----EILELTD 91 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCC-SE----EEETTCSTHHH----HHHHHTT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccc----cccc-cc----cccCCccCHHH----HHHHHhC
Confidence 4789999999999999999988889999999999887764332 2222 22 13555543333 33332
Q ss_pred CCCeeEEEEccc
Q psy12836 219 NKKINVLINNAG 230 (429)
Q Consensus 219 ~g~iD~lI~nAG 230 (429)
...+|+++.+.|
T Consensus 92 ~~g~d~v~d~~g 103 (183)
T d1pqwa_ 92 GYGVDVVLNSLA 103 (183)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCEEEEEeccc
Confidence 236999999987
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00019 Score=60.71 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+||+||+|...++-....|++|+.+++++++.+.+.+ + +. .. .+|-++++-.+++ .++- ...
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-l---Ga-~~----vi~~~~~d~~~~v-~~~t-~g~ 96 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---GA-WQ----VINYREEDLVERL-KEIT-GGK 96 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---TC-SE----EEETTTSCHHHHH-HHHT-TTC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-c---CC-eE----EEECCCCCHHHHH-HHHh-CCC
Confidence 48899999999999999999988999999999999998765432 2 21 12 2466665433333 2221 234
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
.+|+++.+.|.
T Consensus 97 g~d~v~d~~g~ 107 (179)
T d1qora2 97 KVRVVYDSVGR 107 (179)
T ss_dssp CEEEEEECSCG
T ss_pred CeEEEEeCccH
Confidence 79999998874
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00024 Score=59.88 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||.|+|.|| ||-+++++..|.+.|++|.++.|+.++.++..+.+.... .+... +..+.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~~~----------- 75 (170)
T d1nyta1 13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQAL--SMDEL----------- 75 (170)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSGGG-----------
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---ccccc--ccccc-----------
Confidence 45778999999998 889999999999999999999999999988887765433 22222 22111
Q ss_pred HhCCCeeEEEEcccc
Q psy12836 217 KENKKINVLINNAGV 231 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~ 231 (429)
.....|++||+...
T Consensus 76 -~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 76 -EGHEFDLIINATSS 89 (170)
T ss_dssp -TTCCCSEEEECCSC
T ss_pred -cccccceeeccccc
Confidence 12367999998644
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00013 Score=53.06 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
+|++++|+||+||+|....+.+...|++|+.+.+++++.+.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 678999999999999999998888999999999999887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.34 E-value=0.00024 Score=57.17 Aligned_cols=71 Identities=20% Similarity=0.362 Sum_probs=56.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++|.|+ |-+|+.+|+.|.++|+.|+++++++++.+++.+++ ...++..|.++++.++++- ....|
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~------i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAG------IEDAD 67 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTT------TTTCS
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcC------hhhhh
Confidence 5889998 99999999999999999999999999888765542 2456789999998766551 23567
Q ss_pred EEEEc
Q psy12836 224 VLINN 228 (429)
Q Consensus 224 ~lI~n 228 (429)
.++..
T Consensus 68 ~vv~~ 72 (132)
T d1lssa_ 68 MYIAV 72 (132)
T ss_dssp EEEEC
T ss_pred hhccc
Confidence 77764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=0.00067 Score=57.53 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+|+|+|| |+||...++.+...|+ +|+++++++++++.+ +++ +. .. ..|..+. +..+..+++.+..
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga-~~----vi~~~~~-~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI---GA-DL----TLNRRET-SVEERRKAIMDIT 96 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT---TC-SE----EEETTTS-CHHHHHHHHHHHT
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc---cc-eE----EEecccc-chHHHHHHHHHhh
Confidence 5899999997 8999999999989998 799999999988654 333 11 11 1244332 2222233333322
Q ss_pred --CCeeEEEEcccc
Q psy12836 220 --KKINVLINNAGV 231 (429)
Q Consensus 220 --g~iD~lI~nAG~ 231 (429)
..+|++|.++|.
T Consensus 97 ~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 97 HGRGADFILEATGD 110 (182)
T ss_dssp TTSCEEEEEECSSC
T ss_pred CCCCceEEeecCCc
Confidence 359999999886
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00045 Score=58.15 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|+||+|++|...++.....|++|+.+++++++.+.+. ++ +. ..+ .|..+.. ++. ...+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~l---Ga-~~~----i~~~~~~------~~~-~~~~ 90 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL---GA-EEA----ATYAEVP------ERA-KAWG 90 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT---TC-SEE----EEGGGHH------HHH-HHTT
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-cc---cc-cee----eehhhhh------hhh-hccc
Confidence 6899999999999999999988889999999999988766543 22 11 122 2443321 222 2345
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|+++.+.|
T Consensus 91 g~D~v~d~~G 100 (171)
T d1iz0a2 91 GLDLVLEVRG 100 (171)
T ss_dssp SEEEEEECSC
T ss_pred cccccccccc
Confidence 7999999776
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=0.00071 Score=56.98 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+++||.|+|.|+ ||.+++++..|.+.+.+|+++.|+.++++...+.+.... .+.....|-.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~~~~~------------- 75 (171)
T d1p77a1 13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQAVSMDSI------------- 75 (171)
T ss_dssp TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGGGC-------------
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---ccchhhhccc-------------
Confidence 34678999999987 888999999999988999999999999998888775432 3444443311
Q ss_pred HhCCCeeEEEEccccC
Q psy12836 217 KENKKINVLINNAGVS 232 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~ 232 (429)
.....|++||+....
T Consensus 76 -~~~~~diiIN~tp~g 90 (171)
T d1p77a1 76 -PLQTYDLVINATSAG 90 (171)
T ss_dssp -CCSCCSEEEECCCC-
T ss_pred -cccccceeeeccccc
Confidence 134689999997654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.16 E-value=0.0029 Score=51.72 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
+-.++.+.|.|| |.+|..+|..|+.+|. +|++.++++++++..+.++..... ...+.....|. +
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~---~-------- 70 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY---D-------- 70 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG---G--------
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH---H--------
Confidence 345677888897 9999999999999885 799999999887766666654321 12233333332 1
Q ss_pred HHHhCCCeeEEEEccccCCCC
Q psy12836 215 VKKENKKINVLINNAGVSGCR 235 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~ 235 (429)
....-|++|..||....+
T Consensus 71 ---~l~daDvvvitag~~~~~ 88 (148)
T d1ldna1 71 ---DCRDADLVVICAGANQKP 88 (148)
T ss_dssp ---GTTTCSEEEECCSCCCCT
T ss_pred ---HhccceeEEEeccccccc
Confidence 123569999999986543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.04 E-value=0.001 Score=55.56 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+++|.|++|++|..++..+...|+ +|+++++++++.+.+.+ + +. . . ..|.++.+..++..+.. ..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---Ga--~-~--~i~~~~~~~~~~~~~~~--~~ 95 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---GA--D-Y--VINASMQDPLAEIRRIT--ES 95 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---TC--S-E--EEETTTSCHHHHHHHHT--TT
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---CC--c-e--eeccCCcCHHHHHHHHh--hc
Confidence 578999999999999999999998895 89999999887765433 2 11 1 1 23555544444443322 12
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++|.++|.
T Consensus 96 ~~~d~vid~~g~ 107 (170)
T d1jvba2 96 KGVDAVIDLNNS 107 (170)
T ss_dssp SCEEEEEESCCC
T ss_pred ccchhhhccccc
Confidence 469999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0018 Score=54.10 Aligned_cols=81 Identities=25% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+|+|.|+ |++|...+..+...|+ +|+++++++++++.+. ++. .. .++..+-.+.....+.++.. ..
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~G-----a~-~~~~~~~~~~~~~~~~~~~~--~g 95 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIG-----AD-LVLQISKESPQEIARKVEGQ--LG 95 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTT-----CS-EEEECSSCCHHHHHHHHHHH--HT
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhC-----Cc-cccccccccccccccccccc--CC
Confidence 4778999987 9999999999999999 7999999999887543 331 11 12222333444443333332 23
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.+.|.
T Consensus 96 ~g~Dvvid~~G~ 107 (171)
T d1pl8a2 96 CKPEVTIECTGA 107 (171)
T ss_dssp SCCSEEEECSCC
T ss_pred CCceEEEeccCC
Confidence 478999999985
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.95 E-value=0.0046 Score=50.37 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhc-CCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLES-KNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.+.|.|+ |.+|..+|..|+.+| .+|+++++++++++....++.... ..........|. + .
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~-----------~ 69 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S-----------D 69 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H-----------H
Confidence 456777896 999999999999998 489999999988776665654311 111223333343 1 1
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
...-|++|..||....+. ..-...+..|. .+.+.+.+.+.
T Consensus 70 ~~~adivvitag~~~~~g----~~r~~l~~~N~----~i~~~~~~~i~ 109 (146)
T d1ez4a1 70 CKDADLVVITAGAPQKPG----ESRLDLVNKNL----NILSSIVKPVV 109 (146)
T ss_dssp GTTCSEEEECCCC--------------CHHHHH----HHHHHHHHHHH
T ss_pred hccccEEEEecccccCCC----CCHHHHHHHHH----HHHHHHHHHHh
Confidence 235699999999754321 11222334443 34555555555
|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Ubiquitin ligase NEDD4 WWIII domain species: fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.92 E-value=0.00017 Score=43.13 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.7
Q ss_pred CCCCcc---------eEEEEEee---ecccCcc
Q psy12836 67 GPSSFN---------LVAFIVHV---TIGMDTQ 87 (429)
Q Consensus 67 ~~lp~~---------~~~~~~~~---~~~~dp~ 87 (429)
||||+| ++|||||+ +++.|||
T Consensus 1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR 33 (33)
T d2jmfa1 1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33 (33)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred CccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence 577777 99999999 9999997
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00021 Score=63.14 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEcC----------------CCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEee
Q psy12836 138 TSARGKIVIVTGA----------------NTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCD 201 (429)
Q Consensus 138 ~~l~gK~vLITGa----------------ssGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~D 201 (429)
.+|+||.||||+| ||-.|.++|+++..+|++|.++...... ..+ ..+.. ..
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~----------~~p-~~~~~--~~ 68 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL----------PTP-PFVKR--VD 68 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC----------CCC-TTEEE--EE
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc----------Ccc-ccccc--ce
Confidence 4789999999986 5789999999999999999998764421 111 12332 24
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEccccCC
Q psy12836 202 LASQESIRAFAEEVKKENKKINVLINNAGVSG 233 (429)
Q Consensus 202 ls~~~sv~~~~~~i~~~~g~iD~lI~nAG~~~ 233 (429)
+.+.++....+.+. +...|++|++|++..
T Consensus 69 ~~t~~~m~~~~~~~---~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 69 VMTALEMEAAVNAS---VQQQNIFIGCAAVAD 97 (223)
T ss_dssp CCSHHHHHHHHHHH---GGGCSEEEECCBCCS
T ss_pred ehhhHHHHHHHHhh---hccceeEeeeechhh
Confidence 55666665555444 345699999999864
|
| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Dystrophin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00014 Score=43.80 Aligned_cols=28 Identities=11% Similarity=-0.114 Sum_probs=24.9
Q ss_pred ccccchhhccCCceEEEEeceeeeeeceecc
Q psy12836 21 LRSALWELSSGAGRVKYYDCMTYVYLSFQSG 51 (429)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (429)
.-+-||.-.+++.-.||+||.++ +|||.
T Consensus 11 V~~PWeRait~n~VPYYINH~~e---~T~WD 38 (38)
T d1eg3a3 11 VQGPWERAISPNKVPYYINHETQ---TTCWD 38 (38)
T ss_dssp CCTTEEEEECTTSCEEEEETTTT---EEESS
T ss_pred cccchhhhccccCCCeEeecccc---cccCC
Confidence 34569999999999999999999 99994
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.84 E-value=0.0046 Score=50.37 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=70.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
|.+.|+|+ |.+|..+|..|+.+|. ++++.++++++++....++.... .+........|. ++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~~----------- 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---AA----------- 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---GG-----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---HH-----------
Confidence 56778895 8999999999999884 89999999988776666665432 112222223232 21
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
...-|++|..||......+-....-...++.|. .+++.+.+.+.+ ..+.+.++++|-
T Consensus 67 l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~----~i~~~i~~~i~~-----------------~~p~aivivvtN 123 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTS----SMVQSVGTNLKE-----------------SGFHGVLVVISN 123 (146)
T ss_dssp GTTCSEEEECCSCGGGTC-------CTTHHHHH----HHHHHHHHHHHH-----------------TTCCSEEEECSS
T ss_pred hccccEEEEeccccccccccCCccHHHHHHHHH----HHHHHHHHHHhh-----------------cCCCeEEEEecC
Confidence 134599999999754221111111122334443 445666666653 345667777664
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.71 E-value=0.0014 Score=55.72 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEE-EEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIM-ACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil-~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++++|||+||+||+|...++-.-..|+++++ ++++.++.....+++.. .. ..|..+++ ..+.++++. .
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga----d~----vi~~~~~~-~~~~~~~~~--~ 98 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF----DA----AVNYKTGN-VAEQLREAC--P 98 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC----SE----EEETTSSC-HHHHHHHHC--T
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc----eE----Eeeccchh-HHHHHHHHh--c
Confidence 3589999999999999999887778987554 56666666555544311 11 23555443 333333332 2
Q ss_pred CCeeEEEEccc
Q psy12836 220 KKINVLINNAG 230 (429)
Q Consensus 220 g~iD~lI~nAG 230 (429)
..+|+++.+.|
T Consensus 99 ~GvDvv~D~vG 109 (187)
T d1vj1a2 99 GGVDVYFDNVG 109 (187)
T ss_dssp TCEEEEEESSC
T ss_pred cCceEEEecCC
Confidence 36999999987
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.69 E-value=0.00063 Score=57.10 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~ 183 (429)
+|++|||+||+||+|...++-....|++|+.++++.++.+.+.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~ 65 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK 65 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence 5678999999999999999877788999999999998876653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.68 E-value=0.0015 Score=54.94 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|.+|+|.|+ +|+|...+..+...|+ +|+++++++++.+.+.+. +...+ .|-.+ .+.+.+..+.. .
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~-----Ga~~~----i~~~~~~~~~~~~~~~~--~ 95 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-----GATEC----VNPQDYKKPIQEVLTEM--S 95 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-----TCSEE----ECGGGCSSCHHHHHHHH--T
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh-----CCeeE----EecCCchhHHHHHHHHH--h
Confidence 5889999999 7899999999999985 899999999987754332 11111 12222 22344444443 2
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
.+.+|++|.+.|..
T Consensus 96 ~~G~D~vid~~G~~ 109 (176)
T d2jhfa2 96 NGGVDFSFEVIGRL 109 (176)
T ss_dssp TSCBSEEEECSCCH
T ss_pred cCCCCEEEecCCch
Confidence 35799999998863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.68 E-value=0.00062 Score=54.56 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=53.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|.++|.|+ |-+|+.+|+.|.++|++|++++.++++.+++.+. ....+.+|.++++.++++- + .+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~--i----~~a 65 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLG--I----RNF 65 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHT--G----GGC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccC--C----ccc
Confidence 45777777 7899999999999999999999999887765322 1235568999988766541 1 245
Q ss_pred eEEEEccc
Q psy12836 223 NVLINNAG 230 (429)
Q Consensus 223 D~lI~nAG 230 (429)
|.+|...+
T Consensus 66 ~~vi~~~~ 73 (134)
T d2hmva1 66 EYVIVAIG 73 (134)
T ss_dssp SEEEECCC
T ss_pred cEEEEEcC
Confidence 77776543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.005 Score=51.12 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.|+ |++|...++.+...|++|+++++++++++.+.+ + +. .. ++ |-.+.... . .+..+
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~-l---Ga--~~-~i--~~~~~~~~---~---~~~~~ 90 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-M---GA--DH-YI--ATLEEGDW---G---EKYFD 90 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---TC--SE-EE--EGGGTSCH---H---HHSCS
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc-c---CC--cE-Ee--eccchHHH---H---Hhhhc
Confidence 5889999987 899999888777889999999999998875433 3 11 11 11 22221111 1 22345
Q ss_pred CeeEEEEccccCC
Q psy12836 221 KINVLINNAGVSG 233 (429)
Q Consensus 221 ~iD~lI~nAG~~~ 233 (429)
..|.++.+.|...
T Consensus 91 ~~d~vi~~~~~~~ 103 (168)
T d1piwa2 91 TFDLIVVCASSLT 103 (168)
T ss_dssp CEEEEEECCSCST
T ss_pred ccceEEEEecCCc
Confidence 7899999887643
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.63 E-value=0.02 Score=47.14 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~ 212 (429)
+..+..+.+.|.|+ |.+|..+|..|+.+|. ++++.++++++++..+.++.... .+........|..+
T Consensus 15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~-------- 85 (160)
T d1i0za1 15 EATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV-------- 85 (160)
T ss_dssp CCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG--------
T ss_pred cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh--------
Confidence 44555667778896 9999999999999996 79999999988876666664321 11222222223222
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
...-|++|..||....+. .+. ...++.|. .+.+.+.+.+.+ ....+-++
T Consensus 86 ------~~~adiVVitAg~~~~~g-~tR---~~l~~~N~----~i~~~i~~~i~~-----------------~~p~aiii 134 (160)
T d1i0za1 86 ------TANSKIVVVTAGVRQQEG-ESR---LNLVQRNV----NVFKFIIPQIVK-----------------YSPDCIII 134 (160)
T ss_dssp ------GTTCSEEEECCSCCCCTT-CCG---GGGHHHHH----HHHHHHHHHHHH-----------------HCTTCEEE
T ss_pred ------cccccEEEEecCCccccC-cch---HHHHHHHH----HHHHHHHHHHHh-----------------cCCCcEEE
Confidence 234599999999764332 222 22333343 456666666663 34567777
Q ss_pred EEcC
Q psy12836 293 NVSS 296 (429)
Q Consensus 293 ~vSS 296 (429)
++|-
T Consensus 135 vvtN 138 (160)
T d1i0za1 135 VVSN 138 (160)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 7775
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.001 Score=56.31 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
.+++++||+||+||+|...++-.-..|++|+.++|++++.+.+
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence 3456899999999999999988888999999999999987654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.60 E-value=0.0085 Score=49.42 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcC--CceEEEEEeeCCCHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESK--NKYVLCRKCDLASQESIRAFA 212 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dls~~~sv~~~~ 212 (429)
...++...+.|.|+ |.+|..+|..|+.+|. ++++.+++.+++...+.++..... +........|..
T Consensus 14 ~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~--------- 83 (159)
T d2ldxa1 14 EDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN--------- 83 (159)
T ss_dssp CCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG---------
T ss_pred cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh---------
Confidence 34455556777796 9999999999999985 799999999888766666654221 112222222321
Q ss_pred HHHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEE
Q psy12836 213 EEVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRII 292 (429)
Q Consensus 213 ~~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV 292 (429)
....-|++|..||....+.+ +.. ..++.|. .+.+.+.+.+.+ ....+.++
T Consensus 84 -----~~~~adivvitag~~~~~~~-~R~---dll~~N~----~i~~~i~~~i~~-----------------~~p~~ivi 133 (159)
T d2ldxa1 84 -----VSANSKLVIITAGARMVSGQ-TRL---DLLQRNV----AIMKAIVPGVIQ-----------------NSPDCKII 133 (159)
T ss_dssp -----GGTTEEEEEECCSCCCCTTT-CSS---CTTHHHH----HHHHHHTTTHHH-----------------HSTTCEEE
T ss_pred -----hhccccEEEEecccccCCCC-CHH---HHHHHHH----HHHHHHHHHHhc-----------------cCCCeEEE
Confidence 12466999999998654321 111 2233333 335555555543 34567777
Q ss_pred EEcC
Q psy12836 293 NVSS 296 (429)
Q Consensus 293 ~vSS 296 (429)
++|-
T Consensus 134 vvtN 137 (159)
T d2ldxa1 134 VVTN 137 (159)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 7775
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.57 E-value=0.0011 Score=55.77 Aligned_cols=80 Identities=18% Similarity=0.080 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.+. ++-. .. .+|..+.+..+++.+.. ..
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lGa----~~----~i~~~~~~~~~~v~~~t--~g 94 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYGA----TD----ILNYKNGHIEDQVMKLT--NG 94 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHTC----SE----EECGGGSCHHHHHHHHT--TT
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hhCc----cc----cccccchhHHHHHHHHh--hc
Confidence 4778999986 8999999998888998 6999999998876553 3311 11 23444433333322221 12
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
..+|++|.++|..
T Consensus 95 ~G~D~vid~~g~~ 107 (174)
T d1jqba2 95 KGVDRVIMAGGGS 107 (174)
T ss_dssp SCEEEEEECSSCT
T ss_pred cCcceEEEccCCH
Confidence 3599999999863
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.48 E-value=0.0099 Score=48.74 Aligned_cols=82 Identities=23% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+.+.+.|.|+ |.+|..+|..|+..| +++++.+.++++++..+..+.... .+...... . -++.+ +.+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~-~~~~~---~~~----- 74 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-A-EYSYE---AAL----- 74 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-E-ECSHH---HHH-----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-c-cCchh---hhh-----
Confidence 3466777797 999999999999888 489999999888776666654321 11111111 1 11221 111
Q ss_pred hCCCeeEEEEccccCCCC
Q psy12836 218 ENKKINVLINNAGVSGCR 235 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~~~ 235 (429)
..-|++|..||....+
T Consensus 75 --~~adiVvitag~~~~~ 90 (154)
T d1pzga1 75 --TGADCVIVTAGLTKVP 90 (154)
T ss_dssp --TTCSEEEECCSCSSCT
T ss_pred --cCCCeEEEecccccCC
Confidence 2459999999986543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.46 E-value=0.01 Score=48.17 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=60.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChh--HHHHHHHHHhhhc----CCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLD--KCEKARKEVVLES----KNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~--~~~~~~~~l~~~~----~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.|+||+|.+|.++|..|+.+|. ++++++++++ +++..+.++.... ...++.....+ +.
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~---------- 69 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NL---------- 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CG----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hH----------
Confidence 378999999999999999999994 8999998763 3444444444321 11222222211 11
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
+....-|++|.+||....+. .+.. ..++.|.. +.+.+.+.+.
T Consensus 70 -~~l~~aDvVVitAG~~~~~g-~sR~---dl~~~Na~----iv~~i~~~i~ 111 (145)
T d1hyea1 70 -RIIDESDVVIITSGVPRKEG-MSRM---DLAKTNAK----IVGKYAKKIA 111 (145)
T ss_dssp -GGGTTCSEEEECCSCCCCTT-CCHH---HHHHHHHH----HHHHHHHHHH
T ss_pred -HHhccceEEEEecccccCCC-CChh---hhhhhhHH----HHHHHHHHHh
Confidence 11235699999999764332 2322 23444543 4555555554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.43 E-value=0.0089 Score=49.28 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++++|.|+ |++|...++.+...|++|+.+++++++++.+. ++ +. .. ..|.++.+..+.+.+ ..+
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~---Ga-~~----~i~~~~~~~~~~~~~----~~~ 92 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KL---GA-SL----TVNARQEDPVEAIQR----DIG 92 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---TC-SE----EEETTTSCHHHHHHH----HHS
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh-cc---Cc-cc----cccccchhHHHHHHH----hhc
Confidence 4789999886 99999999888888999999999998876543 22 11 11 235555544444333 223
Q ss_pred CeeEEEEcccc
Q psy12836 221 KINVLINNAGV 231 (429)
Q Consensus 221 ~iD~lI~nAG~ 231 (429)
..|..|.+++.
T Consensus 93 g~~~~i~~~~~ 103 (166)
T d1llua2 93 GAHGVLVTAVS 103 (166)
T ss_dssp SEEEEEECCSC
T ss_pred CCccccccccc
Confidence 45555655553
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.40 E-value=0.0058 Score=49.62 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=68.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
.+.|+||+|.+|.++|..|+.+|. ++++.+.+..+.+. .++.....-.... .-+ ...+..+.+ ..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~~~~~~~---~~~-~~~~~~~~~-------~~ 68 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIETRATVK---GYL-GPEQLPDCL-------KG 68 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSSSSCEEE---EEE-SGGGHHHHH-------TT
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhhhhcCCC---eEE-cCCChHHHh-------CC
Confidence 578999999999999999999985 69999988755432 3333221111111 111 122222222 24
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
-|++|..||....+.+ +. .+.++.|..- ++.+.+.+.+ ..+.+.|+++|..
T Consensus 69 aDivVitag~~~~~g~-sR---~~ll~~N~~i----~~~i~~~i~~-----------------~~p~~iiivvtNP 119 (144)
T d1mlda1 69 CDVVVIPAGVPRKPGM-TR---DDLFNTNATI----VATLTAACAQ-----------------HCPDAMICIISNP 119 (144)
T ss_dssp CSEEEECCSCCCCTTC-CG---GGGHHHHHHH----HHHHHHHHHH-----------------HCTTSEEEECSSC
T ss_pred CCEEEECCCcCCCCCC-Cc---chHHHHHHHH----HHHHHHHHHh-----------------cCCCeEEEEecCc
Confidence 6999999997543322 22 2235555543 4555555553 3356788877753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0073 Score=50.05 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|++|+|.|+ ||||...++.+...|+++++++++.++.+.+ +++. . .. .+|..+.+... ...+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lG---a-d~----~i~~~~~~~~~-------~~~~ 92 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALG---A-DE----VVNSRNADEMA-------AHLK 92 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHT---C-SE----EEETTCHHHHH-------TTTT
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH-hccC---C-cE----EEECchhhHHH-------HhcC
Confidence 5889999986 8999999988888999999999998876543 3332 1 11 24666654322 2335
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
.+|++|.+.|..
T Consensus 93 ~~D~vid~~g~~ 104 (168)
T d1uufa2 93 SFDFILNTVAAP 104 (168)
T ss_dssp CEEEEEECCSSC
T ss_pred CCceeeeeeecc
Confidence 799999998854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.39 E-value=0.0059 Score=51.01 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEE-EEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKV-IMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~V-il~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+|+|.|+ |+||...+..+...|+++ +++++++++++.+. ++- . .. + .|..+.+ +.+.+.++. .
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~G---a-~~--~--i~~~~~~-~~~~i~~~t--~ 94 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLG---A-TH--V--INSKTQD-PVAAIKEIT--D 94 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHT---C-SE--E--EETTTSC-HHHHHHHHT--T
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcC---C-eE--E--EeCCCcC-HHHHHHHHc--C
Confidence 4789999997 899999998888889865 55677777766543 331 1 12 2 3555533 333333332 3
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+.+|++|.+.|.
T Consensus 95 gg~D~vid~~G~ 106 (174)
T d1f8fa2 95 GGVNFALESTGS 106 (174)
T ss_dssp SCEEEEEECSCC
T ss_pred CCCcEEEEcCCc
Confidence 579999999885
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.33 E-value=0.039 Score=45.97 Aligned_cols=104 Identities=11% Similarity=-0.025 Sum_probs=59.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-------KVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAE 213 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~ 213 (429)
-.|.||||+|.||.+++..|++... .+.+.+.+. +.++...-++........-..... ++..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~--~~~~------- 95 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--IDPY------- 95 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--SCHH-------
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc--ccch-------
Confidence 3699999999999999999997532 455555543 344444444443322111111111 1211
Q ss_pred HHHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 214 EVKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 214 ~i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
+.+...|++|..||....+. .+.++ .++.|. .+.+.+.+.+.
T Consensus 96 ---~~~~~aDvVvi~ag~~rkpg-~tR~D---ll~~N~----~I~k~~~~~i~ 137 (175)
T d7mdha1 96 ---EVFEDVDWALLIGAKPRGPG-MERAA---LLDING----QIFADQGKALN 137 (175)
T ss_dssp ---HHTTTCSEEEECCCCCCCTT-CCHHH---HHHHHH----HHHHHHHHHHH
T ss_pred ---hhccCCceEEEeeccCCCCC-CcHHH---HHHHHH----HHHHHHHHHHH
Confidence 23457799999999864332 33333 344453 34566666665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.019 Score=46.08 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=61.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+.|.|| |.+|..+|..++.+| .++++.+.++++++....++..... .........| .++ ...
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~~-----------~~~ 67 (140)
T d1a5za1 3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YAD-----------LKG 67 (140)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GGG-----------GTT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HHH-----------hcC
Confidence 456686 899999999999887 4899999999888766666544221 1122222322 221 135
Q ss_pred eeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q psy12836 222 INVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQA 267 (429)
Q Consensus 222 iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~ 267 (429)
-|++|..||....+.+ +.. +.+..|. .+.+.+.+.+.+
T Consensus 68 adivvitag~~~~~g~-~r~---dl~~~N~----~I~~~i~~~i~~ 105 (140)
T d1a5za1 68 SDVVIVAAGVPQKPGE-TRL---QLLGRNA----RVMKEIARNVSK 105 (140)
T ss_dssp CSEEEECCCCCCCSSC-CHH---HHHHHHH----HHHHHHHHHHHH
T ss_pred CCEEEEecccccCCCc-chh---hhhcccc----chHHHHHHHHHh
Confidence 6999999998654322 222 2233343 345666666653
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.27 E-value=0.03 Score=45.59 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=61.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC---------EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA---------KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~---------~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.|.|+||+|.+|..++..|+..+. +++...++.++++....++...... ....+...-.+.
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------- 75 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPK--------- 75 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHH---------
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchh---------
Confidence 699999999999999999998753 3344455666666655555443321 222222222221
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
+.+..-|++|..||....+. .+.+++ +..|. ...+.+.+.+.
T Consensus 76 --~~~~~advViitaG~~~~pg-~~r~dl---~~~N~----~i~~~~~~~i~ 117 (154)
T d1y7ta1 76 --VAFKDADYALLVGAAPRKAG-MERRDL---LQVNG----KIFTEQGRALA 117 (154)
T ss_dssp --HHTTTCSEEEECCCCCCCTT-CCHHHH---HHHHH----HHHHHHHHHHH
T ss_pred --hhcccccEEEeecCcCCCCC-CcHHHH---HHHHH----HHHHHHHHHHH
Confidence 22346799999999865332 233333 33343 34556666655
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.21 E-value=0.0082 Score=50.32 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH-HHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQES-IRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s-v~~~~~~i~~~ 218 (429)
.|.+|+|.|+ ||+|...+..+...|+ +|+.+++++++++.+.+ +- .... .|-.+.+. .+...+.. .
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~G-----A~~~---in~~~~~~~~~~~~~~~--~ 96 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-VG-----ATEC---ISPKDSTKPISEVLSEM--T 96 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-HT-----CSEE---ECGGGCSSCHHHHHHHH--H
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-cC-----CcEE---ECccccchHHHHHHHHh--c
Confidence 5889999987 8999999999999995 89999999999875443 31 1111 13232222 22222222 2
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
.+.+|++|.+.|..
T Consensus 97 g~G~d~vi~~~g~~ 110 (176)
T d1d1ta2 97 GNNVGYTFEVIGHL 110 (176)
T ss_dssp TSCCCEEEECSCCH
T ss_pred cccceEEEEeCCch
Confidence 34799999998853
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.20 E-value=0.01 Score=47.95 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhcCC-ceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLESKN-KYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|+.+| |+ |.+|..+|..++.+|. ++++.++++++++....++...... ........| . +.
T Consensus 2 ~KI~II-Ga-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~-----------~~ 65 (142)
T d1y6ja1 2 SKVAII-GA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y-----------SD 65 (142)
T ss_dssp CCEEEE-CC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G-----------GG
T ss_pred CeEEEE-CC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H-----------HH
Confidence 355555 87 9999999999999985 7999999998776555566532211 122222211 1 12
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
...-|++|..||....+. .+. ...+..|. .+.+.+.+.+.
T Consensus 66 ~~~adivvitag~~~~~~-~~r---~~l~~~N~----~i~~~i~~~i~ 105 (142)
T d1y6ja1 66 VKDCDVIVVTAGANRKPG-ETR---LDLAKKNV----MIAKEVTQNIM 105 (142)
T ss_dssp GTTCSEEEECCCC-------CH---HHHHHHHH----HHHHHHHHHHH
T ss_pred hCCCceEEEecccccCcC-cch---hHHhhHHH----HHHHHHHHHhh
Confidence 235699999999764322 122 22344444 44556666665
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.16 E-value=0.0067 Score=46.88 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
-.+++||+++|.|+ |-+|..-|+.|++.|++|++++....
T Consensus 7 ~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 7 FCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp EECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred EEEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 45899999999999 45999999999999999999987654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.16 E-value=0.0037 Score=52.56 Aligned_cols=52 Identities=33% Similarity=0.473 Sum_probs=44.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhc
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLES 190 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~ 190 (429)
..+++||.|+|.|+ ||.+++++..|.+.| +|.++.|+.++.++..+.+....
T Consensus 13 ~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~ 64 (177)
T d1nvta1 13 IGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL 64 (177)
T ss_dssp HCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhh
Confidence 34689999999987 789999999998777 99999999999998888776543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0021 Score=48.09 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
+++||+++|.|. |.-|+++|+.|+++|++|++.+.+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 689999999998 66899999999999999999988553
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.15 E-value=0.0019 Score=55.75 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=39.3
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
..+++||+++|-| .|.+|..+|+.|.+.|++|++.+.+.+.+...
T Consensus 22 ~~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 22 LGSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 3479999999998 57799999999999999999999988776654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.12 E-value=0.005 Score=51.65 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|.+|+|.|+ ||||...+..+...|+ +|+++++++++++.+ +++ +... . .|..+ .+.++...+.. .
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~----Ga~~--~--i~~~~~~~~~~~~~~~~--~ 95 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL----GATD--C--LNPRELDKPVQDVITEL--T 95 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT----TCSE--E--ECGGGCSSCHHHHHHHH--H
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHh----CCCc--c--cCCccchhhhhhhHhhh--h
Confidence 5789999975 9999999999999998 588889998886543 333 1111 1 23222 12233333333 3
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.++|.
T Consensus 96 ~~G~d~vie~~G~ 108 (174)
T d1e3ia2 96 AGGVDYSLDCAGT 108 (174)
T ss_dssp TSCBSEEEESSCC
T ss_pred cCCCcEEEEeccc
Confidence 4589999999985
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.06 E-value=0.037 Score=44.46 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=60.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcC--hhHHHHHHHHHhhh-cCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRD--LDKCEKARKEVVLE-SKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~--~~~~~~~~~~l~~~-~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+.|+||+|.+|.++|..++.+|. ++++.+.+ .+.++....++... ...........|. ++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~----------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---ED----------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GG-----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HH-----------
Confidence 478999999999999999999985 79998854 34444334444321 1122333333332 21
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
...-|++|..||....+. .+. .+.++.|. .+.+.+.+.+.
T Consensus 68 ~~~aDiVvitaG~~~~~g-~~R---~dl~~~N~----~I~~~i~~~i~ 107 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQPG-QTR---IDLAGDNA----PIMEDIQSSLD 107 (142)
T ss_dssp GTTCSEEEECCCCCCCTT-CCH---HHHHHHHH----HHHHHHHHHHH
T ss_pred hhhcCEEEEecccccccC-Cch---hhHHHHHH----HHHHHHHHHHH
Confidence 135699999999754332 232 23444454 34566666665
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.0041 Score=51.80 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l 186 (429)
++|.|+|.|+ ||.+++++..|.+.|+ +|.++.|+.++.+...+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 5788999988 8999999999999997 7999999999888776654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.01 E-value=0.053 Score=43.59 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=60.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhh--cCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLE--SKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~--~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+.|.|+ |.+|.++|..|+.+|. ++++.++++++++....++... ..+........|. ++ .
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~---~~-----------~ 67 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP---EI-----------C 67 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG---GG-----------G
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH---HH-----------h
Confidence 3556687 9999999999999985 7999999998876655555432 1111111112222 11 1
Q ss_pred CCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 220 KKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 220 g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
..-|++|..||....+. .+.. +.+..|. .+.+.+.+.+.
T Consensus 68 ~daDvVVitaG~~~~~g-~~R~---dl~~~N~----~i~~~i~~~i~ 106 (143)
T d1llda1 68 RDADMVVITAGPRQKPG-QSRL---ELVGATV----NILKAIMPNLV 106 (143)
T ss_dssp TTCSEEEECCCCCCCTT-CCHH---HHHHHHH----HHHHHHHHHHH
T ss_pred hCCcEEEEecccccCCC-Cchh---hhhhhhH----HHHHHHHHHHH
Confidence 24599999999764332 2332 2344444 34555555554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.96 E-value=0.023 Score=47.06 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
.|++-|.|| |.+|.++|..|+++|++|.+.+|++++.+...+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc
Confidence 478899998 8999999999999999999999999887765543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.95 E-value=0.0088 Score=49.73 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|++|+|.|+ |++|...+..+...|+ +|+.+++++++++.+.+ + .... + .|-++ +.++...+.. ..
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~----ga~~--~--i~~~~-~~~~~~~~~~--~~ 98 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-L----GADH--V--VDARR-DPVKQVMELT--RG 98 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-T----TCSE--E--EETTS-CHHHHHHHHT--TT
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-c----ccce--e--ecCcc-cHHHHHHHhh--CC
Confidence 4789999986 9999999998888886 67777888887665433 2 1111 1 24333 3344443322 22
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
..+|++|.++|.
T Consensus 99 ~g~d~vid~~g~ 110 (172)
T d1h2ba2 99 RGVNVAMDFVGS 110 (172)
T ss_dssp CCEEEEEESSCC
T ss_pred CCceEEEEecCc
Confidence 369999999985
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.93 E-value=0.023 Score=46.66 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHh--------hhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV--------LESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~--------~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+.|.|+ |-+|.++|+.|.++|++|++.+|+.+..+++.+.-. +...+..+.++. ...+.+++.++++.
T Consensus 3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIila---vp~~~~~~vl~~l~ 78 (165)
T d2f1ka2 3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLC---TPIQLILPTLEKLI 78 (165)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEEC---SCHHHHHHHHHHHG
T ss_pred EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeeccccccccccccc---CcHhhhhhhhhhhh
Confidence 455555 999999999999999999999999888776544210 111222333332 23567888888887
Q ss_pred HhCCCeeEEEEccc
Q psy12836 217 KENKKINVLINNAG 230 (429)
Q Consensus 217 ~~~g~iD~lI~nAG 230 (429)
....+=.+++..++
T Consensus 79 ~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 79 PHLSPTAIVTDVAS 92 (165)
T ss_dssp GGSCTTCEEEECCS
T ss_pred hhcccccceeeccc
Confidence 65544445555543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.91 E-value=0.0065 Score=50.86 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHH-HHHHHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQE-SIRAFAEEVKK 217 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~-sv~~~~~~i~~ 217 (429)
-.|.+|+|.|+ ||+|...++.+...|+ +|+.+++++++++.+.+ + +... + .|.++.+ .+.+.....
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l----Ga~~--~--i~~~~~d~~~~~~~~~~-- 93 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L----GATE--C--LNPKDYDKPIYEVICEK-- 93 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T----TCSE--E--ECGGGCSSCHHHHHHHH--
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c----CCcE--E--EcCCCchhHHHHHHHHh--
Confidence 35789999986 8999999999999997 78899999998875533 2 1111 1 2433322 123333322
Q ss_pred hCCCeeEEEEcccc
Q psy12836 218 ENKKINVLINNAGV 231 (429)
Q Consensus 218 ~~g~iD~lI~nAG~ 231 (429)
..+.+|++|.++|.
T Consensus 94 ~~~G~d~vid~~g~ 107 (174)
T d1p0fa2 94 TNGGVDYAVECAGR 107 (174)
T ss_dssp TTSCBSEEEECSCC
T ss_pred cCCCCcEEEEcCCC
Confidence 33579999999885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.86 E-value=0.0066 Score=50.54 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCC-HHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLAS-QESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~-~~sv~~~~~~i~~~ 218 (429)
.|.+|+|.|+ +|+|...++.+...|+ .|+.+++++++.+. .+++-. .. + .|..+ .+.+.+.++.. .
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~lGa----~~--~--i~~~~~~~~~~~~~~~~--~ 95 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEFGA----TE--C--INPQDFSKPIQEVLIEM--T 95 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHHTC----SE--E--ECGGGCSSCHHHHHHHH--T
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHhCC----cE--E--EeCCchhhHHHHHHHHH--c
Confidence 5889999998 5999999999999996 57777788877654 334321 11 1 13322 23344444433 2
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|++|.+.|.
T Consensus 96 ~~g~D~vid~~G~ 108 (176)
T d2fzwa2 96 DGGVDYSFECIGN 108 (176)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCcEeeecCCC
Confidence 3479999999885
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.062 Score=43.27 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=66.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-C--CEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-K--AKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+.|+||+|.+|.++|..|+.+ + .++++.+..+ ..+....++........... ...-.+.+++ .
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~-~~~~~~~~~~-----------~ 68 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKG-FSGEDATPAL-----------E 68 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEE-ECSSCCHHHH-----------T
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcE-EEcCCCcccc-----------C
Confidence 4779999999999999988754 4 6899999865 34433444543222122222 1223333322 1
Q ss_pred CeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcCc
Q psy12836 221 KINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSSV 297 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS~ 297 (429)
.-|++|..||....+.+ + -.+.++.|.. ..+...+.+.+ ..+.+.++++|..
T Consensus 69 ~aDvvvitaG~~~k~g~-~---R~dl~~~N~~----i~~~v~~~i~~-----------------~~p~aivivvtNP 120 (145)
T d2cmda1 69 GADVVLISAGVRRKPGM-D---RSDLFNVNAG----IVKNLVQQVAK-----------------TCPKACIGIITNP 120 (145)
T ss_dssp TCSEEEECCSCCCCTTC-C---GGGGHHHHHH----HHHHHHHHHHH-----------------HCTTSEEEECSSS
T ss_pred CCCEEEECCCccCCCCc-c---hhhHHHHHHH----HHHHHHHHHHh-----------------hCCCcEEEEccCC
Confidence 35999999998643321 2 2233455543 45555555543 3355777777753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.026 Score=46.21 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~ 183 (429)
.|++++|.|+ |+||...++.+...|++|+++++++++++.+.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 4789999875 99999999888899999999999998876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.70 E-value=0.012 Score=50.27 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.|.+|+|.|+ |++|...+......|+ +|+++++++++++.+.+ + + ... ..|-.+ +++.+.+.++. ..
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~-~----G-a~~---~~~~~~-~~~~~~i~~~t-~g 92 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA-Q----G-FEI---ADLSLD-TPLHEQIAALL-GE 92 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-T----T-CEE---EETTSS-SCHHHHHHHHH-SS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh-c----c-ccE---EEeCCC-cCHHHHHHHHh-CC
Confidence 5889999987 8999888888777787 78889999988765433 2 1 111 123233 33333333332 33
Q ss_pred CCeeEEEEccccC
Q psy12836 220 KKINVLINNAGVS 232 (429)
Q Consensus 220 g~iD~lI~nAG~~ 232 (429)
...|++|.+.|..
T Consensus 93 ~g~D~vid~vG~~ 105 (195)
T d1kola2 93 PEVDCAVDAVGFE 105 (195)
T ss_dssp SCEEEEEECCCTT
T ss_pred CCcEEEEECcccc
Confidence 4799999999853
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.70 E-value=0.01 Score=48.12 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=56.0
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
..+.+-|++.|.||.|-+|..+|+.|.++|++|.+.+|+.....+...+ +..+.... ....++...+.++.
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~------~~~~v~~~---~~~~~~~~v~~~~~ 74 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILA------NADVVIVS---VPINLTLETIERLK 74 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHT------TCSEEEEC---SCGGGHHHHHHHHG
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhhh------hccccccc---cchhhheeeeeccc
Confidence 4556678899999999999999999999999999999987654432211 12333333 33445666666665
Q ss_pred HhCCCeeEEEEccc
Q psy12836 217 KENKKINVLINNAG 230 (429)
Q Consensus 217 ~~~g~iD~lI~nAG 230 (429)
....+=-+++..+.
T Consensus 75 ~~~~~~~iiiD~~S 88 (152)
T d2pv7a2 75 PYLTENMLLADLTS 88 (152)
T ss_dssp GGCCTTSEEEECCS
T ss_pred ccccCCceEEEecc
Confidence 54432234444443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.70 E-value=0.064 Score=42.89 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=49.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcC--CEEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRK--AKVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+.|+|| |.+|..+|..|+.+| .++++.+.++++++.....+.... .......... .+.++ ..
T Consensus 3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~~ 68 (142)
T d1guza1 3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------TA 68 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------GT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------hc
Confidence 566696 999999999999998 489999999987765554443211 0112222221 22221 23
Q ss_pred CeeEEEEccccCCC
Q psy12836 221 KINVLINNAGVSGC 234 (429)
Q Consensus 221 ~iD~lI~nAG~~~~ 234 (429)
.-|++|..||....
T Consensus 69 dadvvvitag~~~~ 82 (142)
T d1guza1 69 NSDIVIITAGLPRK 82 (142)
T ss_dssp TCSEEEECCSCCCC
T ss_pred CCeEEEEEEecCCC
Confidence 56999999998643
|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Suppressor of deltex (Cg4244-pb) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.66 E-value=0.0022 Score=41.01 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred cCCCCcc---------eEEEEEee---ecccCccc
Q psy12836 66 TGPSSFN---------LVAFIVHV---TIGMDTQL 88 (429)
Q Consensus 66 ~~~lp~~---------~~~~~~~~---~~~~dp~~ 88 (429)
.+|||.| ++|||||. +++.|||+
T Consensus 10 ~gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR~ 44 (45)
T d1tk7a1 10 LGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRT 44 (45)
T ss_dssp TSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEECCCCCc
Confidence 3689988 99999999 99999985
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.01 Score=50.49 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=38.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV 187 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~ 187 (429)
|.|.|.|| |-+|..+|..++.+|++|++.+++++.++++.+.+.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~ 48 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE 48 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence 67889998 779999999999999999999999988877766654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.51 E-value=0.1 Score=41.65 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=49.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEE-eeCCCHHHHHHHHHHHHHhC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVLES--KNKYVLCRK-CDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~-~Dls~~~sv~~~~~~i~~~~ 219 (429)
+.|.|+ |.+|.++|..|+.+|. ++++++.++++++....++.... ......... -|. + ..
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~-----------~~ 67 (142)
T d1ojua1 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S-----------LL 67 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G-----------GG
T ss_pred EEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---H-----------Hh
Confidence 556686 9999999999999884 69999999988776555554321 111112222 232 1 12
Q ss_pred CCeeEEEEccccCCC
Q psy12836 220 KKINVLINNAGVSGC 234 (429)
Q Consensus 220 g~iD~lI~nAG~~~~ 234 (429)
..-|++|..||....
T Consensus 68 ~~adiVvitag~~~~ 82 (142)
T d1ojua1 68 KGSEIIVVTAGLARK 82 (142)
T ss_dssp TTCSEEEECCCCCCC
T ss_pred ccccEEEEeccccCC
Confidence 356999999997643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.021 Score=46.31 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=56.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCee
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKIN 223 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~iD 223 (429)
.++|.|. +-+|..+++.|.++|.+|+++..++++..+..++... ..+.++..|.++++.++++- ..+.|
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~------i~~a~ 73 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAG------IDRCR 73 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHT------TTTCS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhc------cccCC
Confidence 4778787 6899999999999999999999998876655555432 24677899999987665542 23567
Q ss_pred EEEEcc
Q psy12836 224 VLINNA 229 (429)
Q Consensus 224 ~lI~nA 229 (429)
.+|...
T Consensus 74 ~vi~~~ 79 (153)
T d1id1a_ 74 AILALS 79 (153)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 887764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.47 E-value=0.096 Score=42.42 Aligned_cols=103 Identities=14% Similarity=0.013 Sum_probs=56.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-------EEEEEEcCh--hHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-------KVIMACRDL--DKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.|.|+||+|.+|.++|..|++.+. .+++.+.+. ++++....++...... ....+..-- +.
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~--------- 73 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATD-KE--------- 73 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-TEEEEEEES-CH---------
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccc-cccccccCc-cc---------
Confidence 689999999999999999987652 456665443 3333333333322211 111111111 11
Q ss_pred HHHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 215 VKKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
.+.+...|++|..||....+.+ +.+ +.++.|. ...+.+.+.+.
T Consensus 74 -~~~~~~~dvVVitag~~~~~g~-sr~---dll~~N~----~i~k~~~~~i~ 116 (154)
T d5mdha1 74 -EIAFKDLDVAILVGSMPRRDGM-ERK---DLLKANV----KIFKCQGAALD 116 (154)
T ss_dssp -HHHTTTCSEEEECCSCCCCTTC-CTT---TTHHHHH----HHHHHHHHHHH
T ss_pred -ccccCCceEEEEecccCCCCCC-chh---HHHHHhH----HHHHHHHHHHH
Confidence 1123467999999998754432 222 2233343 34555666554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.47 E-value=0.015 Score=46.86 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=57.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhc--CCceEEEE-EeeCCCHHHHHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLES--KNKYVLCR-KCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~-~~Dls~~~sv~~~~~~i~~~ 218 (429)
|.+.|.|+ |.+|.++|..|+.++. ++++.+.++++.+....++.... ........ .-|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--------------
Confidence 35566686 9999999999999884 89999998887766555553211 01111111 112211
Q ss_pred CCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHH
Q psy12836 219 NKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQ 266 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~ 266 (429)
...-|++|.+||....+.. + -.+.+..|. .+.+.+.+.+.
T Consensus 67 ~~~advvvitag~~~~~~~-~---r~dl~~~N~----~i~~~i~~~i~ 106 (142)
T d1uxja1 67 TANSDVIVVTSGAPRKPGM-S---REDLIKVNA----DITRACISQAA 106 (142)
T ss_dssp GTTCSEEEECCSCC-------------CHHHHH----HHHHHHHHHHG
T ss_pred hcCCCEEEEeeeccCCcCc-c---hhHHHhHHH----HHHHHHHHHHh
Confidence 1245999999997643321 1 122333443 35666666665
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.28 E-value=0.097 Score=42.28 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=69.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.+.|.|+ |++|.++|..|+.++. ++++.++++++++..+.++.... ..........| +. +...
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~-----------~~~~ 70 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY-----------DDLA 70 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG-----------GGGT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc-----------cccC
Confidence 4666685 9999999998888874 79999999888776666554321 11122222222 11 1223
Q ss_pred CeeEEEEccccCCCCCCCC-HHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEcC
Q psy12836 221 KINVLINNAGVSGCRKMLT-EEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVSS 296 (429)
Q Consensus 221 ~iD~lI~nAG~~~~~~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vSS 296 (429)
.-|++|..||....+.+.+ ...-...+..|. .+.+.+.+.+.+ ..+.+.++++|-
T Consensus 71 ~advvvitag~~~~~g~~~~~~~R~~l~~~N~----~iv~~i~~~i~~-----------------~~p~aivivvtN 126 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNN----KIMIEIGGHIKK-----------------NCPNAFIIVVTN 126 (150)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHH----HHHHHHHHHHHH-----------------HCTTSEEEECSS
T ss_pred CCcEEEEecccccCCCCCccccchhHHHHHHH----HHHHHHHHHHHh-----------------cCCCeEEEEecC
Confidence 5699999999865432211 111223344454 445556665553 335567777664
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.89 E-value=0.011 Score=48.10 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
-.+++||++||.|| |.+|..-|+.|++.|++|.+++..
T Consensus 8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp EECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred heeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34689999999999 569999999999999999999754
|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Ubiquitin ligase NEDD4 WWIII domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.80 E-value=0.0058 Score=39.89 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.6
Q ss_pred cCCCCcc---------eEEEEEee---ecccCccc
Q psy12836 66 TGPSSFN---------LVAFIVHV---TIGMDTQL 88 (429)
Q Consensus 66 ~~~lp~~---------~~~~~~~~---~~~~dp~~ 88 (429)
.+|||+| ++||+||. +++.|||+
T Consensus 9 ~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~ 43 (50)
T d1i5hw_ 9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4689988 99999999 99999985
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.78 E-value=0.014 Score=49.23 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=37.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV 187 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~ 187 (429)
|+|.|.|| |-+|..+|..++.+|++|++.+++++.+++..+.+.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~ 48 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA 48 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhh
Confidence 45778888 779999999999999999999999988877666654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.49 E-value=0.073 Score=44.03 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=57.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHh---------------hhcCCceEEEEEeeCCCHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVV---------------LESKNKYVLCRKCDLASQESI 208 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~---------------~~~~~~~v~~~~~Dls~~~sv 208 (429)
.|-|.|- |-+|.++|+.|+++|++|++.+|++++.+++.++-. .... ....+...+.+.+.+
T Consensus 4 nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~~v 80 (176)
T d2pgda2 4 DIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQAV 80 (176)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTHHH
T ss_pred cEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchHHH
Confidence 4556666 889999999999999999999999999887654311 1111 112333456677788
Q ss_pred HHHHHHHHHhCCCeeEEEEcc
Q psy12836 209 RAFAEEVKKENKKINVLINNA 229 (429)
Q Consensus 209 ~~~~~~i~~~~g~iD~lI~nA 229 (429)
....+.+.....+=+++|.+.
T Consensus 81 ~~v~~~l~~~~~~g~iiid~s 101 (176)
T d2pgda2 81 DNFIEKLVPLLDIGDIIIDGG 101 (176)
T ss_dssp HHHHHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHhccccCcEEEecC
Confidence 888888776655546666654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.09 E-value=0.052 Score=44.29 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
|-|.| .|-+|.++|+.|+++|++|++.+|+.++.++..+
T Consensus 3 IgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~ 41 (161)
T d1vpda2 3 VGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA 41 (161)
T ss_dssp EEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred EEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH
Confidence 34444 4889999999999999999999999988877654
|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Yap65 ww domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.007 Score=38.74 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.2
Q ss_pred CCCcc---------eEEEEEee---ecccCccccccc
Q psy12836 68 PSSFN---------LVAFIVHV---TIGMDTQLVFPK 92 (429)
Q Consensus 68 ~lp~~---------~~~~~~~~---~~~~dp~~~~~~ 92 (429)
+||+| ++|||||+ ++..|||...+.
T Consensus 8 ~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~~~~ 44 (46)
T d1jmqa_ 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLS 44 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSSSC
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEecCCCCccccC
Confidence 57776 89999999 999999987654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.01 E-value=0.027 Score=46.62 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHH-HHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQES-IRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~s-v~~~~~~i~~~ 218 (429)
.|.+|+|.|+ +|+|...+..++..|+ +|+.+++++++++.+.+ + + .. .+ .|.++.+. +++..+.. .
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~----G-Ad-~~--in~~~~~~~~~~~~~~~--~ 95 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F----G-AT-DF--VNPNDHSEPISQVLSKM--T 95 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T----T-CC-EE--ECGGGCSSCHHHHHHHH--H
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-c----C-Cc-EE--EcCCCcchhHHHHHHhh--c
Confidence 5789999986 7788888888888876 68889999988765432 2 1 11 12 23333222 22333222 2
Q ss_pred CCCeeEEEEcccc
Q psy12836 219 NKKINVLINNAGV 231 (429)
Q Consensus 219 ~g~iD~lI~nAG~ 231 (429)
.+.+|+++.+.|.
T Consensus 96 ~~G~d~vid~~G~ 108 (175)
T d1cdoa2 96 NGGVDFSLECVGN 108 (175)
T ss_dssp TSCBSEEEECSCC
T ss_pred cCCcceeeeecCC
Confidence 3579999999985
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.99 E-value=0.086 Score=45.80 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=41.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
..+|+||+++|-|- |-+|..+|+.|.+.|++|+.++.+...+.....+
T Consensus 34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~ 81 (230)
T d1leha1 34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 81 (230)
T ss_dssp SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence 56799999999886 7899999999999999999999988877665554
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.91 E-value=0.21 Score=42.17 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=56.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..+++|++||=-|+++|. ++..++..|+ +|+.++.+++.++.+.+.+.... ....++..|+.+.
T Consensus 42 ~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~~---------- 106 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSEF---------- 106 (201)
T ss_dssp TTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGGC----------
T ss_pred cCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhhh----------
Confidence 457899999999998772 3334566785 89999999988887777665433 3566777776432
Q ss_pred HHhCCCeeEEEEccccC
Q psy12836 216 KKENKKINVLINNAGVS 232 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~ 232 (429)
.+++|++|.|.-..
T Consensus 107 ---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 ---NSRVDIVIMNPPFG 120 (201)
T ss_dssp ---CCCCSEEEECCCCS
T ss_pred ---CCcCcEEEEcCccc
Confidence 45899999997653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=93.83 E-value=0.12 Score=45.92 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=55.0
Q ss_pred CEEEEEcCCCc-HHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGassG-IG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++++-.|++|| ||.+++ + ...++|++++.+++.++-+.+.++...-..++.+...|+.+. ..+.+++
T Consensus 112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~~~ 179 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKFAS 179 (271)
T ss_dssp CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGTTT
T ss_pred cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------cccccCc
Confidence 45665666666 554443 2 357899999999999887777766554445677778887643 3345578
Q ss_pred eeEEEEccccCC
Q psy12836 222 INVLINNAGVSG 233 (429)
Q Consensus 222 iD~lI~nAG~~~ 233 (429)
+|++|.|.-+..
T Consensus 180 fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 180 IEMILSNPPYVK 191 (271)
T ss_dssp CCEEEECCCCBC
T ss_pred ccEEEEcccccC
Confidence 999999987653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.08 Score=46.32 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEE
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCR 198 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 198 (429)
++++++|+|.|+ ||+|.+++..|+..|. ++.+++.+. .|.+.+++.++...+...+..+
T Consensus 27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~ 105 (247)
T d1jw9b_ 27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 105 (247)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence 467899999995 8899999999999997 788887542 2555666666666666566555
Q ss_pred EeeCC
Q psy12836 199 KCDLA 203 (429)
Q Consensus 199 ~~Dls 203 (429)
...++
T Consensus 106 ~~~~~ 110 (247)
T d1jw9b_ 106 NALLD 110 (247)
T ss_dssp CSCCC
T ss_pred hhhhh
Confidence 44443
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.75 E-value=0.027 Score=44.19 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=49.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
|.++|.|. +.+|.++++.| +|.+|+++..+++..+..... .+.++.+|.++++.++++ ...+-
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a------~i~~A 63 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKA------NVRGA 63 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHT------TCTTC
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHh------hhhcC
Confidence 56888886 77999999999 456788889988876654321 356778999998776553 22355
Q ss_pred eEEEEc
Q psy12836 223 NVLINN 228 (429)
Q Consensus 223 D~lI~n 228 (429)
+.+|..
T Consensus 64 ~~vi~~ 69 (129)
T d2fy8a1 64 RAVIVN 69 (129)
T ss_dssp SEEEEC
T ss_pred cEEEEe
Confidence 777764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=93.50 E-value=0.26 Score=44.75 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
.+|++||=.++..| |.++ +++..|.+|+.++.++..++.+.+.+...+- ..+.++..|..+ +.+......
T Consensus 144 ~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~------~~~~~~~~~ 213 (318)
T d1wxxa2 144 FRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFD------LLRRLEKEG 213 (318)
T ss_dssp CCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHH------HHHHHHHTT
T ss_pred hCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHH------HhhhhHhhh
Confidence 46889998877755 3333 3455678999999999998888777665443 357777777533 334444455
Q ss_pred CCeeEEEEccccCC
Q psy12836 220 KKINVLINNAGVSG 233 (429)
Q Consensus 220 g~iD~lI~nAG~~~ 233 (429)
++.|.||.+.-...
T Consensus 214 ~~fD~Vi~DpP~~~ 227 (318)
T d1wxxa2 214 ERFDLVVLDPPAFA 227 (318)
T ss_dssp CCEEEEEECCCCSC
T ss_pred cCCCEEEEcCCccc
Confidence 68999999976543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.015 Score=55.69 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcCh-------------------hHHHHHHHHHhhhcCCceEEEEE
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDL-------------------DKCEKARKEVVLESKNKYVLCRK 199 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~~ 199 (429)
|++..|+|.|+ ||||.++++.|+..|. ++.+++.+. .|.+.+++.++...++.++..+.
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 46778999999 7799999999999998 788887642 24444455555555544555544
Q ss_pred eeCC
Q psy12836 200 CDLA 203 (429)
Q Consensus 200 ~Dls 203 (429)
.++.
T Consensus 114 ~~i~ 117 (426)
T d1yovb1 114 NKIQ 117 (426)
T ss_dssp SCGG
T ss_pred cccc
Confidence 4443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.43 E-value=0.31 Score=44.38 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANT-GIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGass-GIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.|++||=.|+.. +++. .++..|+ +|+.++.+++.++.+.+.+...+-..++.++..|+. .........
T Consensus 145 ~g~~VLDl~~g~G~~si----~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~ 214 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAI----HAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKK 214 (324)
T ss_dssp TTCEEEETTCTTTHHHH----HHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHT
T ss_pred CCCeeecccCcccchhh----hhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhc
Confidence 478888777764 4444 3456676 799999999988888777766554456777777653 334444455
Q ss_pred CCCeeEEEEccccCC
Q psy12836 219 NKKINVLINNAGVSG 233 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~ 233 (429)
..+.|++|.++-...
T Consensus 215 ~~~fD~Vi~DpP~~~ 229 (324)
T d2as0a2 215 GEKFDIVVLDPPAFV 229 (324)
T ss_dssp TCCEEEEEECCCCSC
T ss_pred cCCCCchhcCCcccc
Confidence 678999999976543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.11 Score=42.48 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCE 180 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~ 180 (429)
...+.||+++|.|= |-||+.+|+.+...|++|+++..++.+.-
T Consensus 19 ~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al 61 (163)
T d1li4a1 19 DVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINAL 61 (163)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhH
Confidence 56789999999986 58999999999999999999999986543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.25 E-value=0.76 Score=37.40 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
..+.-.|+|.|| |--|++-++.....|++|.+.+.+.+++++....... .+ .+-.++.+.+++.+.+
T Consensus 29 gv~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~---~~~~~~~~~l~~~~~~---- 95 (168)
T d1pjca1 29 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RV---ELLYSNSAEIETAVAE---- 95 (168)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GS---EEEECCHHHHHHHHHT----
T ss_pred CCCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cc---eeehhhhhhHHHhhcc----
Confidence 345568888888 6688999999999999999999999998876655432 12 2334566666665543
Q ss_pred CCCeeEEEEccccCCC
Q psy12836 219 NKKINVLINNAGVSGC 234 (429)
Q Consensus 219 ~g~iD~lI~nAG~~~~ 234 (429)
-|++|..+=+.+.
T Consensus 96 ---aDivI~aalipG~ 108 (168)
T d1pjca1 96 ---ADLLIGAVLVPGR 108 (168)
T ss_dssp ---CSEEEECCCCTTS
T ss_pred ---CcEEEEeeecCCc
Confidence 4999999877643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.18 E-value=0.077 Score=44.45 Aligned_cols=42 Identities=29% Similarity=0.245 Sum_probs=36.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKC 179 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~ 179 (429)
...+.||++.|.|. |.||+++|+.+..-|++|+..++...+.
T Consensus 39 ~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 39 GTEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred cccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChh
Confidence 56789999999985 8999999999999999999998876543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.13 E-value=0.48 Score=42.74 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 141 RGKIVIVTGANTG-IGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 141 ~gK~vLITGassG-IG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
+|+.||=..+.+| ++. .++..|++|+.++.+...++.+.+.+....- ..++.++..|+ -+++++..+.
T Consensus 132 ~~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~------~~~l~~~~~~ 201 (309)
T d2igta1 132 RPLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA------MKFIQREERR 201 (309)
T ss_dssp SCCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH------HHHHHHHHHH
T ss_pred CCCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH------HHhHHHHhhc
Confidence 4677776666554 333 4567899999999999888887776655433 23677887665 3455555566
Q ss_pred CCCeeEEEEccccC
Q psy12836 219 NKKINVLINNAGVS 232 (429)
Q Consensus 219 ~g~iD~lI~nAG~~ 232 (429)
..+.|+||++.-..
T Consensus 202 ~~~fD~IilDPP~f 215 (309)
T d2igta1 202 GSTYDIILTDPPKF 215 (309)
T ss_dssp TCCBSEEEECCCSE
T ss_pred CCCCCEEEECCCcc
Confidence 67899999986433
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.03 E-value=0.073 Score=44.70 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=35.6
Q ss_pred CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 136 EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 136 ~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
...+++|+++.|.|. |.||+++|+.|..-|++|+..++..
T Consensus 38 ~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 38 HAYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp TCCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred cceeccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 366899999999996 7899999999999999999999854
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.91 E-value=0.076 Score=45.04 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
..+++||++.|.|- |.||+.+|+.|..-|++|+..++...
T Consensus 38 g~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~ 77 (197)
T d1j4aa1 38 GREVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN 77 (197)
T ss_dssp BCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence 45789999999997 78999999999999999999887654
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.80 E-value=0.37 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~ 185 (429)
|+-+| |.|-+|.++|+.|+++|++|.+.+|+.++.+++.++
T Consensus 3 kIGvI--GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 3 DVGVV--GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp SEEEE--CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred EEEEE--eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 44444 568899999999999999999999999998877665
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=92.80 E-value=0.088 Score=44.46 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
...++||++.|.|. |.||+++|+.+..-|++|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 56799999999976 78999999999999999999988654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.77 E-value=0.084 Score=40.99 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
-++|.++|.|| |.+|.++|..|++.|.+|.++.+..
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence 35678888876 7999999999999999999998864
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.67 E-value=0.084 Score=44.76 Aligned_cols=73 Identities=25% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
..++.||+||=-|+++|+ ++..++..|+ +|+.++.+++.++.+.+.+ ..+.++.+|+.+.
T Consensus 44 ~~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l---------- 104 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI---------- 104 (197)
T ss_dssp HTSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC----------
T ss_pred cCCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhc----------
Confidence 347899999999999884 3345677785 6999999987776554432 2456778887532
Q ss_pred HHhCCCeeEEEEcccc
Q psy12836 216 KKENKKINVLINNAGV 231 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~ 231 (429)
.+++|++|.|.-.
T Consensus 105 ---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 ---SGKYDTWIMNPPF 117 (197)
T ss_dssp ---CCCEEEEEECCCC
T ss_pred ---CCcceEEEeCccc
Confidence 3689999999654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.093 Score=43.06 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
..++.||.++|.|-|.=+|+-++..|.++|++|..+.+..
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t 71 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 71 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence 5578999999999999999999999999999998875544
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.074 Score=43.93 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDK 178 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~ 178 (429)
..+++||.++|.|.|.=+|+-+|..|+++|++|..+......
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~ 75 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH 75 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS
T ss_pred CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc
Confidence 558999999999999999999999999999999988765443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.60 E-value=0.39 Score=39.65 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+||=.|+++| .++..|++.+.+|+.++.+++.++.+.+.++...-..++.++++|.. +......
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~~ 99 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKIP 99 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTSC
T ss_pred CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hcccccC
Confidence 5778998999887 44556677888999999999999988888776554457888888741 1223346
Q ss_pred CeeEEEEccc
Q psy12836 221 KINVLINNAG 230 (429)
Q Consensus 221 ~iD~lI~nAG 230 (429)
.+|.++.+.+
T Consensus 100 ~~D~v~~~~~ 109 (186)
T d1l3ia_ 100 DIDIAVVGGS 109 (186)
T ss_dssp CEEEEEESCC
T ss_pred CcCEEEEeCc
Confidence 8999998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.58 E-value=0.58 Score=37.28 Aligned_cols=78 Identities=9% Similarity=0.119 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCCc-HHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTG-IGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGassG-IG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
+++|+.||=.|+++| +|. +.+.+|+ +|+.+..+.+..+.+.+.+.......++.+++.|..+ +++
T Consensus 12 ~~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~--- 78 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AID--- 78 (152)
T ss_dssp CCCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHH---
T ss_pred hCCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------ccc---
Confidence 578999998877766 444 4566786 7999999998888777777655555578888888422 222
Q ss_pred HhCCCeeEEEEcc
Q psy12836 217 KENKKINVLINNA 229 (429)
Q Consensus 217 ~~~g~iD~lI~nA 229 (429)
...++.|+++.+.
T Consensus 79 ~~~~~fDiIf~DP 91 (152)
T d2esra1 79 CLTGRFDLVFLDP 91 (152)
T ss_dssp HBCSCEEEEEECC
T ss_pred ccccccceeEech
Confidence 2346899998874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.48 E-value=0.65 Score=37.38 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=54.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcChhHHHHHHHHHhh----------hcCCceEEEEEeeCCCHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKA--KVIMACRDLDKCEKARKEVVL----------ESKNKYVLCRKCDLASQESIRA 210 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~~~~~~~~~~l~~----------~~~~~~v~~~~~Dls~~~sv~~ 210 (429)
|.+.|.|. |-||.++|+.|.+.|. +|+..+++.+.++.+.+.-.. ......+.++ .+-.+.+.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIil---a~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVML---SSPVRTFRE 77 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEE---CSCHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccc---cCCchhhhh
Confidence 56888875 8999999999999996 788899998887765543110 0001122222 234567788
Q ss_pred HHHHHHHhCCCeeEEEEcccc
Q psy12836 211 FAEEVKKENKKINVLINNAGV 231 (429)
Q Consensus 211 ~~~~i~~~~g~iD~lI~nAG~ 231 (429)
.++++......=.+++..++.
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 888877665443455555443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.051 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=31.0
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKC 179 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~ 179 (429)
.+.|.|+ |.||..+|..|++.|++|.+++|+.++.
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 4778888 9999999999999999999999987543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.35 E-value=0.07 Score=44.91 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
++.+.+.|.|| |-.|.++|..|++.|++|.+.+|+++..+...+
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~ 48 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE 48 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Confidence 34456888888 558999999999999999999999887765544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.21 Score=45.14 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
.++||+||-.|++.|+ ++..+|+.|+ +|+.++.++. ...+.+.+.......++.++..|+.+...
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~~~~l~~---------- 98 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVHL---------- 98 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEeeHHHhcC----------
Confidence 4579999999999886 5667788897 7988888765 34455555555555678899988876421
Q ss_pred hCCCeeEEEEc
Q psy12836 218 ENKKINVLINN 228 (429)
Q Consensus 218 ~~g~iD~lI~n 228 (429)
...+.|+++..
T Consensus 99 ~~~~~D~Ivse 109 (311)
T d2fyta1 99 PVEKVDVIISE 109 (311)
T ss_dssp SCSCEEEEEEC
T ss_pred ccccceEEEEe
Confidence 12478999875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=92.31 E-value=3.6 Score=36.71 Aligned_cols=82 Identities=10% Similarity=-0.038 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTG-IGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassG-IG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+||+||=..+..| ++. +++..|+ +|+.++.+...++.+.+.+....- ..++.++..|+ ...+++..+
T Consensus 144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~------~~~l~~~~~ 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV------FDYFKYARR 213 (317)
T ss_dssp BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH------HHHHHHHHH
T ss_pred CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH------HHHHHHHHh
Confidence 4788887666654 443 3456787 699999999888877777655443 24678888775 344555556
Q ss_pred hCCCeeEEEEccccC
Q psy12836 218 ENKKINVLINNAGVS 232 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~ 232 (429)
+..+.|++|.+.-..
T Consensus 214 ~~~~fD~Ii~DPP~f 228 (317)
T d2b78a2 214 HHLTYDIIIIDPPSF 228 (317)
T ss_dssp TTCCEEEEEECCCCC
T ss_pred hcCCCCEEEEcChhh
Confidence 667899999986543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.28 E-value=0.12 Score=43.59 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
..+++||++.|.|. |.||+++|+.+...|++|+..++...
T Consensus 42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred cceecccceEEeec-ccchHHHHHHHHhhcccccccccccc
Confidence 56788999999987 78999999999999999999887654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.28 E-value=0.097 Score=40.54 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
.+|.++|.|| |.+|.++|..|++.|.+|.++.+...
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 3578888887 89999999999999999999998764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.17 E-value=0.18 Score=43.57 Aligned_cols=78 Identities=9% Similarity=0.004 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
....+++||=.|++.|. ++..|+++|.+|+.++.+++-++.+.+.+..... ++.++..|+.+.+
T Consensus 34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~----------- 97 (246)
T d1y8ca_ 34 NNLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN----------- 97 (246)
T ss_dssp TTCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-----------
T ss_pred hCCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhhc-----------
Confidence 34567899999999885 7889999999999999999888877666544333 5778888876532
Q ss_pred hCCCeeEEEEcccc
Q psy12836 218 ENKKINVLINNAGV 231 (429)
Q Consensus 218 ~~g~iD~lI~nAG~ 231 (429)
..++.|++++..+.
T Consensus 98 ~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 98 INRKFDLITCCLDS 111 (246)
T ss_dssp CSCCEEEEEECTTG
T ss_pred ccccccccceeeee
Confidence 13578999876443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.11 Score=42.88 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
..+++||.++|.|-|.=+|+-+|..|+++|+.|..+..+
T Consensus 24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 569999999999999999999999999999999877544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.22 Score=37.84 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..+.++.|.|| |-+|+-++.+..+.|++|++.+.+++.-.. .+ .-.++..|..|.+.+.+++.+.
T Consensus 9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~---~v-------a~~~i~~~~~d~~~l~~~~~~~---- 73 (111)
T d1kjqa2 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM---HV-------AHRSHVINMLDGDALRRVVELE---- 73 (111)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG---GG-------SSEEEECCTTCHHHHHHHHHHH----
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh---hc-------CCeEEECCCCCHHHHHHHHHhh----
Confidence 35568999995 789999999999999999999987653211 00 1235678999999999998765
Q ss_pred CCeeEEEE
Q psy12836 220 KKINVLIN 227 (429)
Q Consensus 220 g~iD~lI~ 227 (429)
.+|++-.
T Consensus 74 -~~DviT~ 80 (111)
T d1kjqa2 74 -KPHYIVP 80 (111)
T ss_dssp -CCSEEEE
T ss_pred -CCceEEE
Confidence 5687743
|
| >d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: WW domain-like superfamily: WW domain family: WW domain domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.039 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=18.8
Q ss_pred cccccchhhccCCceEEEEeceeeeeecee
Q psy12836 20 TLRSALWELSSGAGRVKYYDCMTYVYLSFQ 49 (429)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (429)
.|||||.+-....| +||-+--|. +||
T Consensus 1 ~LPpGW~~i~D~ag-~YyWHiPtG---tTQ 26 (26)
T d2ysca1 1 GLPPGWRKIHDAAG-TYYWHVPSG---STQ 26 (26)
T ss_dssp CCCTTEEEEEETTE-EEEEESSSC---CEE
T ss_pred CcCccceeeeccCc-eEEEeccCC---ccC
Confidence 48999998655554 677776677 666
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.08 E-value=0.52 Score=39.41 Aligned_cols=75 Identities=17% Similarity=0.031 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+.+||=.|++.|. ++..|++.|++|+.++-+.+.++.+.+....... .+..+..|..+.. ...+.
T Consensus 38 ~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~----------~~~~~ 102 (226)
T d1ve3a1 38 RGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLS----------FEDKT 102 (226)
T ss_dssp CCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCC----------SCTTC
T ss_pred CCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccccc--ccccccccccccc----------ccCcC
Confidence 4578999999886 6778999999999999998888877766654433 4566777776532 11247
Q ss_pred eeEEEEcccc
Q psy12836 222 INVLINNAGV 231 (429)
Q Consensus 222 iD~lI~nAG~ 231 (429)
.|+++++..+
T Consensus 103 fD~I~~~~~l 112 (226)
T d1ve3a1 103 FDYVIFIDSI 112 (226)
T ss_dssp EEEEEEESCG
T ss_pred ceEEEEecch
Confidence 8999987554
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.01 E-value=0.14 Score=39.03 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=30.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
|.++|.|| |-||.++|..|++.|.+|.++.|...
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 67888887 78999999999999999999988654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.80 E-value=0.47 Score=38.24 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=32.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKAR 183 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~ 183 (429)
.|-+.| .|-+|.++|+.|+++|++|.+.+|+.++.+.+.
T Consensus 3 kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~ 41 (162)
T d3cuma2 3 QIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV 41 (162)
T ss_dssp EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred EEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh
Confidence 455554 588999999999999999999999988876654
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=90.78 E-value=1.9 Score=35.78 Aligned_cols=145 Identities=13% Similarity=0.033 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCC--CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 138 TSARGKIVIVTGAN--TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 138 ~~l~gK~vLITGas--sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
....|+++++...+ ...+.+++..|.+.|..++.+.-+.. .+.+. +.+ .
T Consensus 21 ~~~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-------------------------~~~~~---l~~-~ 71 (209)
T d2fr1a2 21 ARLDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR-------------------------CGRDE---LAE-R 71 (209)
T ss_dssp CCCCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT-------------------------CCHHH---HHH-H
T ss_pred CCCCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc-------------------------cCHHH---HHH-H
Confidence 34567666666443 34777888889999988876643321 12222 222 2
Q ss_pred HHhCCCeeEEEEccccCCCCCCCCHHHHHhhhcchhHHHHHHHHHHHHHHHhhhccccccchhhhhhcccCCCcEEEEEc
Q psy12836 216 KKENKKINVLINNAGVSGCRKMLTEEKIELQLGVNHMGHFLLTMLLLDKLQANLSRYSLCNLIWYYVFQESAPSRIINVS 295 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~IV~vS 295 (429)
....+.++.+|+-.+........... ....+...+.+++.+. . .....++.+++
T Consensus 72 ~~~~~~~~~vv~l~~~~~~~~~~~~~-----~~~~~~~~l~l~qal~---~------------------~~~~~~l~~vT 125 (209)
T d2fr1a2 72 LRSVGEVAGVLSLLAVDEAEPEEAPL-----ALASLADTLSLVQAMV---S------------------AELGCPLWTVT 125 (209)
T ss_dssp HTTSCCCSEEEECTTTTCCCCSSCGG-----GCHHHHHHHHHHHHHH---H------------------TTCCCCEEEEE
T ss_pred hhccCCCCeEEEeCCCCCCCCcchhH-----HHHHHHHHHHHHHHHH---h------------------CCCCCcEEEEE
Confidence 23446788888876654332211111 1112333444444432 1 22345666666
Q ss_pred CcccccCCCCcccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Q psy12836 296 SVAHKRGTINKEDLNSENSYDPTQAYNQSKLANVLFTRELAKRLEGTGITVNAVH 350 (429)
Q Consensus 296 S~~~~~~~~~~~~l~~~~~~~~~~~Y~aSKaal~~l~~~la~el~~~gIrVn~V~ 350 (429)
..+..... ....-....+++.+|+|.++.|+....+++..+.
T Consensus 126 ~~a~~~~~-------------~d~~~~p~~A~l~Gl~r~~~~E~P~l~~~~vDl~ 167 (209)
T d2fr1a2 126 ESAVATGP-------------FERVRNAAHGALWGVGRVIALENPAVWGGLVDVP 167 (209)
T ss_dssp ESCSCSST-------------TSCCSCGGGHHHHHHHHHHHHHCGGGEEEEEEEC
T ss_pred cCCcccCC-------------CcccCCHhHHhHHHHHHHHHHhCCCceEEEEECC
Confidence 53322211 1112234578899999999999876555555553
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.77 E-value=0.17 Score=40.62 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
+.+++|-.+++.||.++|..|+++|++|.++.+...
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 344444456689999999999999999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.65 E-value=0.2 Score=41.04 Aligned_cols=78 Identities=13% Similarity=-0.024 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC-----------CceEEEEEeeCCCHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK-----------NKYVLCRKCDLASQESIR 209 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dls~~~sv~ 209 (429)
.|++||..|++.| ..+..||++|++|+.++.+++.++.+.+....... .....++.+|..+.....
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 5789999999888 47779999999999999999988887776533211 123456677776643211
Q ss_pred HHHHHHHHhCCCeeEEEEccc
Q psy12836 210 AFAEEVKKENKKINVLINNAG 230 (429)
Q Consensus 210 ~~~~~i~~~~g~iD~lI~nAG 230 (429)
. ...|.++....
T Consensus 97 ~---------~~~D~i~~~~~ 108 (201)
T d1pjza_ 97 I---------GHCAAFYDRAA 108 (201)
T ss_dssp H---------HSEEEEEEESC
T ss_pred c---------cceeEEEEEee
Confidence 1 25677766543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.62 E-value=0.13 Score=39.70 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
+|.++|.|| |-+|.++|..|++.|.+|.++.|++
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence 467888777 8999999999999999999998864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.61 E-value=0.29 Score=37.42 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.|.++|.|| |-||.++|..|++.|.+|.++.|..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 367888887 7899999999999999999998864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.14 Score=39.63 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=29.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
|.++|.|| |-||.++|..|++.|.+|.++.|+.
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence 67888888 5799999999999999999999864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.37 E-value=0.53 Score=40.06 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+||..|+++|--.++.-+|+ |.+|+.+.++++-.+.+.+.+.... -.++.++..|..+- ....+
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g-~~nv~~~~gd~~~g----------~~~~~ 144 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAG-VKNVHVILGDGSKG----------FPPKA 144 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcC-CceeEEEECccccC----------CcccC
Confidence 46789999999999888887776 5679999999887777766665443 35788888887531 12346
Q ss_pred CeeEEEEccccCC
Q psy12836 221 KINVLINNAGVSG 233 (429)
Q Consensus 221 ~iD~lI~nAG~~~ 233 (429)
+.|.++.++++..
T Consensus 145 pfD~Iiv~~a~~~ 157 (215)
T d1jg1a_ 145 PYDVIIVTAGAPK 157 (215)
T ss_dssp CEEEEEECSBBSS
T ss_pred cceeEEeeccccc
Confidence 8999999988753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.22 E-value=0.77 Score=41.26 Aligned_cols=76 Identities=26% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+||+||-.|++.|+ ++..+++.|+ +|+.++.++. ...+.+.+.......++.++..|+.+.+ ..
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~----------~~ 97 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE----------LP 97 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC----------CS
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc----------cc
Confidence 478999999999985 5667788886 6888887753 4444454444444557889998887642 12
Q ss_pred CCCeeEEEEcc
Q psy12836 219 NKKINVLINNA 229 (429)
Q Consensus 219 ~g~iD~lI~nA 229 (429)
..++|+++..-
T Consensus 98 ~~~~D~ivs~~ 108 (316)
T d1oria_ 98 VEKVDIIISEW 108 (316)
T ss_dssp SSCEEEEEECC
T ss_pred cceeEEEeeee
Confidence 35789998763
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.05 E-value=0.25 Score=39.51 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=33.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHcC-CEEEEEEcChhHHHHHHHH
Q psy12836 145 VIVTGANTGIGKAIARELAKRK-AKVIMACRDLDKCEKARKE 185 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G-~~Vil~~R~~~~~~~~~~~ 185 (429)
+.+.|+ |-+|.++++.|++.| .+|++.+|+.++.++..++
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~ 43 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE 43 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence 455666 899999999999888 8999999999888776654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=0.23 Score=41.22 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
....++|.|+|.|| |--|++.|..|+++|++|.+..++..
T Consensus 38 ~~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 38 LPAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 45567899999998 67799999999999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.63 Score=39.39 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+||-.|+++|--.++..++...+.+|+.++.+++.++.+.+.+....- .++.++..|..+. ....+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~----------~~~~~ 143 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYG----------VPEFS 143 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHc----------ccccc
Confidence 477999999998877766666666667999999999988888877755433 3566666665431 11235
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
..|.++.+++..
T Consensus 144 ~fD~I~~~~~~~ 155 (213)
T d1dl5a1 144 PYDVIFVTVGVD 155 (213)
T ss_dssp CEEEEEECSBBS
T ss_pred chhhhhhhccHH
Confidence 789999988764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=89.90 E-value=0.28 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.070 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.|.++|.|| |-||.++|..|++.|++|.++.+..
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 477888887 7899999999999999999998764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.19 Score=38.74 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
|.++|.|| |-||.++|..|++.|++|.++.|..
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 67888887 7899999999999999999998865
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=89.54 E-value=0.81 Score=39.90 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
..|++||=.|+++|+ ++..+++.|++|+.++.++..++.+.+..+...- ...++..|+. + . ...
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~---~-------~-~~~ 182 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLE---A-------A-LPF 182 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHH---H-------H-GGG
T ss_pred CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEecccc---c-------c-ccc
Confidence 468899999999996 3346778899999999999998887776654433 3445565531 1 1 123
Q ss_pred CCeeEEEEc
Q psy12836 220 KKINVLINN 228 (429)
Q Consensus 220 g~iD~lI~n 228 (429)
++.|+++.|
T Consensus 183 ~~fD~V~an 191 (254)
T d2nxca1 183 GPFDLLVAN 191 (254)
T ss_dssp CCEEEEEEE
T ss_pred cccchhhhc
Confidence 689999987
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=89.49 E-value=0.22 Score=38.02 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.+|.++|.|| |-||.++|..|++.|.+|.++.|.+
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence 4788998887 8899999999999999999998865
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=89.49 E-value=2.1 Score=34.54 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=41.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-----CCEEEEEEcChhHHHHHHHHHhh---hc-CCceEEEEEeeCCCHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-----KAKVIMACRDLDKCEKARKEVVL---ES-KNKYVLCRKCDLASQESIRAFAEE 214 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-----G~~Vil~~R~~~~~~~~~~~l~~---~~-~~~~v~~~~~Dls~~~sv~~~~~~ 214 (429)
.+.|.||+|.-...++..++.+ +.+|++.+.++++++.....+.. .. ...++.. .. |. ++++
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---d~---~eal-- 75 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TT---DP---EEAF-- 75 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ES---CH---HHHH--
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cC---Ch---hhcc--
Confidence 4566677654333333444432 24899999999988754444322 21 1222222 21 22 1222
Q ss_pred HHHhCCCeeEEEEccccCC
Q psy12836 215 VKKENKKINVLINNAGVSG 233 (429)
Q Consensus 215 i~~~~g~iD~lI~nAG~~~ 233 (429)
..-|++|+.||...
T Consensus 76 -----~~AD~Vvitag~~~ 89 (167)
T d1u8xx1 76 -----TDVDFVMAHIRVGK 89 (167)
T ss_dssp -----SSCSEEEECCCTTH
T ss_pred -----CCCCEEEECCCcCC
Confidence 35699999999854
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=89.47 E-value=0.15 Score=44.31 Aligned_cols=34 Identities=29% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
||.|+|.|| |-=|+..|..|+++|++|.++.++.
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 688999988 5568899999999999999997653
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.24 E-value=0.22 Score=39.99 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=33.5
Q ss_pred EEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHH
Q psy12836 146 IVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEV 186 (429)
Q Consensus 146 LITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l 186 (429)
.+. |.|-+|.++++.|.+.|++|++..|+.++.++..++.
T Consensus 4 g~I-G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 4 GII-GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp EEE-CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred EEE-eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence 344 5588999999999999999999999998887766554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.21 E-value=0.26 Score=42.03 Aligned_cols=34 Identities=38% Similarity=0.413 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.|.|+|.|| |-.|.++|..|+++|++|.++.|+.
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 356888887 7789999999999999999999863
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.08 E-value=0.24 Score=38.76 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
++|.++|.|| |-+|.++|..|++.|.+|.++.+...
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence 3678888876 89999999999999999999988653
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=89.02 E-value=0.54 Score=38.05 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=38.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHH
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEK 181 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~ 181 (429)
...+.||+++|.|= |-+|+.+|+.|...|++|+++..++-+..+
T Consensus 18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alq 61 (163)
T d1v8ba1 18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQ 61 (163)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHH
Confidence 56789999999986 789999999999999999999999865443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=89.01 E-value=2 Score=35.17 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 139 SARGKIVIVTGAN-TGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 139 ~l~gK~vLITGas-sGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.++|+++|=-.|+ |++|.+ .+.+|+ +|+++..+.+..+.+.+.+.......++.++..|+ .+++++..
T Consensus 39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~------~~~l~~~~ 108 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA------NRALEQFY 108 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH------HHHHHHHH
T ss_pred hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc------hhhhhhhc
Confidence 4567887755555 557664 566888 59999999988887777766554445688888775 34455555
Q ss_pred HhCCCeeEEEEcc
Q psy12836 217 KENKKINVLINNA 229 (429)
Q Consensus 217 ~~~g~iD~lI~nA 229 (429)
....+.|+++.+.
T Consensus 109 ~~~~~fDlIflDP 121 (182)
T d2fhpa1 109 EEKLQFDLVLLDP 121 (182)
T ss_dssp HTTCCEEEEEECC
T ss_pred ccCCCcceEEech
Confidence 5556899998775
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.23 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.071 Sum_probs=29.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
|.++|.|| |-+|.++|..|++.|.+|.++.|..
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence 56777776 8899999999999999999998865
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=88.90 E-value=0.69 Score=37.64 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+|+++|=.|+++|. ++.+.+.+|++|+.++.+++.++.+.+.++...-..++... +.+ .+.........
T Consensus 41 ~g~~vLDl~~G~G~---~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~-----~~d---~~~~~~~~~~~ 109 (171)
T d1ws6a1 41 RRGRFLDPFAGSGA---VGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVAL-----PVE---VFLPEAKAQGE 109 (171)
T ss_dssp TCCEEEEETCSSCH---HHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECS-----CHH---HHHHHHHHTTC
T ss_pred CCCeEEEeccccch---hhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeee-----ehh---cccccccccCC
Confidence 46666766665542 33456678999999999999888777776655443444322 222 22333334456
Q ss_pred CeeEEEEcc
Q psy12836 221 KINVLINNA 229 (429)
Q Consensus 221 ~iD~lI~nA 229 (429)
+.|+++.+.
T Consensus 110 ~fD~If~DP 118 (171)
T d1ws6a1 110 RFTVAFMAP 118 (171)
T ss_dssp CEEEEEECC
T ss_pred ccceeEEcc
Confidence 899999874
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.83 E-value=0.22 Score=37.87 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=28.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
|.++|.|| |-+|.++|..|++.|++|.++.|.+
T Consensus 22 ~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence 56777776 8999999999999999999998864
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.61 Score=41.63 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 150 ANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 150 assGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
.||-.|.++|++|+.+|+.|+++.+.
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecC
Confidence 35679999999999999999998654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.70 E-value=0.092 Score=39.62 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=38.4
Q ss_pred hhcCcccCCCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 128 VLGGAKYTEETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 128 ~~~~~~~~~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.++...+....+++||+|+|.|++ --|..+|..|++.+.+|++..|..
T Consensus 18 i~Hs~~y~~~~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 18 VLHSSLFREPELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp EEEGGGCCCGGGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTT
T ss_pred EEECCcCcchhhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecC
Confidence 445555566778999999999986 668899999999988888777754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.57 E-value=0.17 Score=41.66 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEEcChh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAK-VIMACRDLD 177 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~-Vil~~R~~~ 177 (429)
+|.|+|.|| |-.|.+.|..|+++|++ |.++.|+..
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 577888887 77899999999999985 988888653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.26 E-value=0.25 Score=41.57 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=31.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
+.|. |.|-+|+.+|..|+++|++|++.+.+.++.+..
T Consensus 3 I~Vi-GlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l 39 (202)
T d1mv8a2 3 ISIF-GLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI 39 (202)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EEEE-CCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence 3444 568999999999999999999999998876654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.79 E-value=0.23 Score=38.25 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=27.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
|.++|.|| |-||.++|..|.+.|++|.++.|+
T Consensus 21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 45777776 889999999999999999999875
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.72 E-value=0.22 Score=38.38 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 143 KIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
|.++|.|| |-||.++|..|++.|.+|.++.|++.
T Consensus 26 ~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence 67888887 89999999999999999999988654
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.54 E-value=1.1 Score=34.68 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=53.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCCe
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKKI 222 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~i 222 (429)
.+.|.|++|-+|+++++.+.++|++++.. +++... ...+.. +-.|+|.++.+.+.++.+.+. ++
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~----------~~~~~D---VvIDFS~p~~~~~~l~~~~~~--~~ 66 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE----------ELDSPD---VVIDFSSPEALPKTVDLCKKY--RA 66 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE----------ECSCCS---EEEECSCGGGHHHHHHHHHHH--TC
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH----------HhccCC---EEEEecCHHHHHHHHHHHHhc--CC
Confidence 48899999999999999999999987754 433211 111122 346999999999999998876 45
Q ss_pred eEEEEcccc
Q psy12836 223 NVLINNAGV 231 (429)
Q Consensus 223 D~lI~nAG~ 231 (429)
-+|+-.-|.
T Consensus 67 p~ViGTTG~ 75 (128)
T d1vm6a3 67 GLVLGTTAL 75 (128)
T ss_dssp EEEECCCSC
T ss_pred CEEEEcCCC
Confidence 667766654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.51 E-value=0.93 Score=37.38 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHH
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARK 184 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~ 184 (429)
.-.|+|.|| |-.|++-++.....|++|.+.+.+.+++++..+
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~ 70 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES 70 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence 447888887 678999999999999999999999988776544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=87.48 E-value=0.23 Score=41.91 Aligned_cols=40 Identities=23% Similarity=0.071 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
..++.||++.|.|. |.||+++|+.|..-|++|+..++...
T Consensus 40 ~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 40 GKELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence 56889999999997 78999999999999999999988643
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.05 E-value=1.3 Score=35.38 Aligned_cols=83 Identities=22% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCC---CHHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLA---SQESIRAFAEEVKK 217 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls---~~~sv~~~~~~i~~ 217 (429)
+|+.+.|.+.+||.|--++..+.+.|.++.- -+++..++..+.+ +.....--.+|++ +.+...++++.+.+
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~--l~~~t~~~L~~~l----p~~~~~~NPlD~~~~~~~~~~~~~l~~~~~ 75 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLKLAT--LEEKTIEELRSFL----PPMAAVKNPVDMIASARGEDYYRTAKLLLQ 75 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECC--CCHHHHHHHHHHS----CTTCEESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCccCC--CCHHHHHHHHHhC----CCcccCCCcccccCCCCHHHHHHHHHHHHc
Confidence 5888999999999999999999999977643 3333333333322 2222222245654 56677777776655
Q ss_pred hCCCeeEEEEccc
Q psy12836 218 ENKKINVLINNAG 230 (429)
Q Consensus 218 ~~g~iD~lI~nAG 230 (429)
. +.+|.++....
T Consensus 76 d-~~vd~v~v~~~ 87 (163)
T d2csua3 76 D-PNVDMLIAICV 87 (163)
T ss_dssp S-TTCSEEEEEEE
T ss_pred C-CCcCEEEEeec
Confidence 4 67887765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.87 E-value=0.76 Score=39.22 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.-++|++|=.|++.| .++..|+++|++|+.++-+++-++.+.+.+.... .++.++..|+.+.. -
T Consensus 39 ~~~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~--~~i~~~~~d~~~l~-----------~ 102 (251)
T d1wzna1 39 KREVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--LKIEFLQGDVLEIA-----------F 102 (251)
T ss_dssp SSCCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEESCGGGCC-----------C
T ss_pred CCCCCEEEEeCCCCC---ccchhhcccceEEEEEeecccccccccccccccc--ccchheehhhhhcc-----------c
Confidence 345689999999987 4567899999999999999988777766655433 36778888876632 1
Q ss_pred CCCeeEEEEccc
Q psy12836 219 NKKINVLINNAG 230 (429)
Q Consensus 219 ~g~iD~lI~nAG 230 (429)
-+..|++++.-+
T Consensus 103 ~~~fD~I~~~~~ 114 (251)
T d1wzna1 103 KNEFDAVTMFFS 114 (251)
T ss_dssp CSCEEEEEECSS
T ss_pred ccccchHhhhhh
Confidence 246898887533
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.85 E-value=0.43 Score=39.51 Aligned_cols=37 Identities=30% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.++||++.|.|.+ .||+.+|+.+..-|++|+..+|+.
T Consensus 39 ~l~gk~vgIiG~G-~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGLG-EIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESCS-THHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCceEEEeccc-cccccceeeeeccccccccccccc
Confidence 5899999999985 599999999999999999998865
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.63 E-value=0.24 Score=40.97 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 144 IVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
.+.|.|| |..|.++|..|+++|.+|.+.+|..+
T Consensus 2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~ 34 (180)
T d1txga2 2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD 34 (180)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 3567776 78999999999999999999999654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.45 E-value=1.3 Score=37.54 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcC----CceEEEEEeeCCCHHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESK----NKYVLCRKCDLASQESIRAFAEEVK 216 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dls~~~sv~~~~~~i~ 216 (429)
.|..||-.|+++|--.++.-+++....+|+.++++++-++.+.+.+..... ...+.+...|..+. .
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~----------~ 145 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----------Y 145 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----------C
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc----------c
Confidence 478999999999988888888888888999999999888887777654321 12566667775421 1
Q ss_pred HhCCCeeEEEEccccC
Q psy12836 217 KENKKINVLINNAGVS 232 (429)
Q Consensus 217 ~~~g~iD~lI~nAG~~ 232 (429)
...+..|.++.+++..
T Consensus 146 ~~~~~fD~I~~~~~~~ 161 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAAP 161 (224)
T ss_dssp GGGCCEEEEEECSBBS
T ss_pred chhhhhhhhhhhcchh
Confidence 1235799999998764
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=86.38 E-value=0.39 Score=42.11 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC 173 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~ 173 (429)
..+++||+++|-| .|-+|..+|+.|.+.|++|+.++
T Consensus 31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs 66 (255)
T d1bgva1 31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS 66 (255)
T ss_dssp TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence 4579999999999 58899999999999999998774
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.28 E-value=0.38 Score=38.49 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCC--EEEEEEcCh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKA--KVIMACRDL 176 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~--~Vil~~R~~ 176 (429)
.||+++|.|| |-.|.++|..|.+.|. +|+++.+++
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999998 6779999999999884 788887664
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=0.89 Score=37.84 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+.++=+|-|+||.-.++.+.+ . +.+|+.++++++.++.+.+.+.... .++.++..+.++...+ ++.. ..+.
T Consensus 25 ~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~---~~~~--~~~~ 95 (192)
T d1m6ya2 25 KIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFL---LKTL--GIEK 95 (192)
T ss_dssp CEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHH---HHHT--TCSC
T ss_pred CEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHH---HHHc--CCCC
Confidence 445557888899988888876 3 5799999999999888777665432 3688888888765432 2221 1358
Q ss_pred eeEEEEccccCC
Q psy12836 222 INVLINNAGVSG 233 (429)
Q Consensus 222 iD~lI~nAG~~~ 233 (429)
+|.++...|+..
T Consensus 96 vdgIl~DlGvSs 107 (192)
T d1m6ya2 96 VDGILMDLGVST 107 (192)
T ss_dssp EEEEEEECSCCH
T ss_pred cceeeeccchhH
Confidence 999999999853
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=86.01 E-value=0.28 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.313 Sum_probs=27.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
|+|.|| |-.|.++|.+|+++|.+|+++.++.
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 777776 7899999999999999999998864
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.95 E-value=0.51 Score=38.48 Aligned_cols=34 Identities=6% Similarity=0.071 Sum_probs=23.4
Q ss_pred EEEEcC-CCcHHHHHHHHHHHcC----CEEEEEEcChhH
Q psy12836 145 VIVTGA-NTGIGKAIARELAKRK----AKVIMACRDLDK 178 (429)
Q Consensus 145 vLITGa-ssGIG~aiA~~La~~G----~~Vil~~R~~~~ 178 (429)
+.|.|| +.|.+.+++.-++... .++++.+.++++
T Consensus 4 I~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~ 42 (169)
T d1s6ya1 4 IATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK 42 (169)
T ss_dssp EEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred EEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence 455565 5677777777666532 489999998754
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.68 E-value=0.53 Score=36.30 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
.|.++|.|| |-||.++|..|++.|.+|.++.+..
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 467888887 8999999999999999999998754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=0.55 Score=39.97 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhh----------------cCCceEEEEEeeCCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLE----------------SKNKYVLCRKCDLAS 204 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~----------------~~~~~v~~~~~Dls~ 204 (429)
.|++||..|++.| ..+..|+++|++|+.++-++..++.+.++.... .....+.++.+|+.+
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 5779999999887 568899999999999999998887766654321 112356677777654
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEccccC
Q psy12836 205 QESIRAFAEEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 205 ~~sv~~~~~~i~~~~g~iD~lI~nAG~~ 232 (429)
.. ....+..|+++......
T Consensus 122 l~---------~~~~~~fd~i~~~~~l~ 140 (229)
T d2bzga1 122 LP---------RTNIGKFDMIWDRGALV 140 (229)
T ss_dssp GG---------GSCCCCEEEEEESSSTT
T ss_pred cc---------ccccCceeEEEEEEEEE
Confidence 32 11235678877665543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=84.98 E-value=0.51 Score=40.96 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC 173 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~ 173 (429)
.+++||+++|-| .|-.|..+|+.|.+.|++|+.++
T Consensus 27 ~~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 27 GGIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp SCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEee
Confidence 379999999997 68999999999999999998765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=84.95 E-value=1.4 Score=37.52 Aligned_cols=76 Identities=17% Similarity=0.070 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
.|.+||-.|+++|.-. ..|++.+.+|+.+.++++..+.+.+.+. .. .++.++..|...- ....+
T Consensus 70 ~g~~VLdIG~GsGy~t---a~La~l~~~V~aiE~~~~~~~~A~~~~~-~~--~nv~~~~~d~~~g----------~~~~~ 133 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYT---ALIAEIVDKVVSVEINEKMYNYASKLLS-YY--NNIKLILGDGTLG----------YEEEK 133 (224)
T ss_dssp TTCEEEEECCTTSHHH---HHHHHHSSEEEEEESCHHHHHHHHHHHT-TC--SSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCCCCHHH---HHHHHHhcccccccccHHHHHHHHHHHh-cc--cccccccCchhhc----------chhhh
Confidence 4678999999988543 3466667899999999888776655443 22 3677888886431 11236
Q ss_pred CeeEEEEccccC
Q psy12836 221 KINVLINNAGVS 232 (429)
Q Consensus 221 ~iD~lI~nAG~~ 232 (429)
+.|.++.+|+..
T Consensus 134 pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 134 PYDRVVVWATAP 145 (224)
T ss_dssp CEEEEEESSBBS
T ss_pred hHHHHHhhcchh
Confidence 799999988764
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.90 E-value=0.3 Score=47.61 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEc
Q psy12836 139 SARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACR 174 (429)
Q Consensus 139 ~l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R 174 (429)
.|++..|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~ 57 (529)
T d1yova1 22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDG 57 (529)
T ss_dssp HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECC
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcC
Confidence 456678999987 7999999999999996 6888765
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=84.74 E-value=2.7 Score=31.45 Aligned_cols=81 Identities=9% Similarity=0.061 Sum_probs=55.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
||+|||.--..-+-..+...|-+.|++|+..+.+.+.+-+ .++...+ .+..+..++-+. +--++++++.+....
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~---~~~~~~~--dliilD~~mp~~-~G~e~~~~ir~~~~~ 74 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE---KYKELKP--DIVTMDITMPEM-NGIDAIKEIMKIDPN 74 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHH---HHHHHCC--SEEEEECSCGGG-CHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHH---HHHhccC--CEEEEecCCCCC-CHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999877776654433 3333333 444444444443 334667777777777
Q ss_pred eeEEEEc
Q psy12836 222 INVLINN 228 (429)
Q Consensus 222 iD~lI~n 228 (429)
+-+++..
T Consensus 75 ~pvi~ls 81 (118)
T d1u0sy_ 75 AKIIVCS 81 (118)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777664
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.67 E-value=0.5 Score=37.58 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHH
Q psy12836 150 ANTGIGKAIARELAKRKAKVIMACRDLDKCEKA 182 (429)
Q Consensus 150 assGIG~aiA~~La~~G~~Vil~~R~~~~~~~~ 182 (429)
|.|-+|.++|+.|+++|++|+..+++..+....
T Consensus 7 G~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~ 39 (152)
T d1i36a2 7 GFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE 39 (152)
T ss_dssp SCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence 559999999999999999999888877655443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.51 E-value=1 Score=35.23 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=50.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHc-CCEEEEE-EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 144 IVIVTGANTGIGKAIARELAKR-KAKVIMA-CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 144 ~vLITGassGIG~aiA~~La~~-G~~Vil~-~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
++.|.|++|-+|+++++...+. +++++.. ++.. .+.. +... +.. +-.|+|.++.+.+.++.+.+. +
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~~~~----~~~~--~~D---vvIDFS~p~~~~~~~~~~~~~--~ 68 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-PLSL----LTDG--NTE---VVIDFTHPDVVMGNLEFLIDN--G 68 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-CTHH----HHTT--TCS---EEEECCCTTTHHHHHHHHHHT--T
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-chhh----hccc--cCC---EEEEcccHHHHHHHHHHHHhc--C
Confidence 4789999999999999987764 5776654 3322 2221 1111 112 346999999999999988766 4
Q ss_pred eeEEEEcccc
Q psy12836 222 INVLINNAGV 231 (429)
Q Consensus 222 iD~lI~nAG~ 231 (429)
+-+||-.-|.
T Consensus 69 ~~~ViGTTG~ 78 (135)
T d1yl7a1 69 IHAVVGTTGF 78 (135)
T ss_dssp CEEEECCCCC
T ss_pred CCEEEecccc
Confidence 5567655554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=84.34 E-value=0.54 Score=40.25 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
..+.|+|.|| |--|+.+|..|+++|.+|+++.|+.
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3567888888 5668899999999999999998864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.30 E-value=0.66 Score=39.51 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 138 TSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 138 ~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
..-++|.++|.|| |--|.+.|..|+++|++|.++.++.
T Consensus 45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 45 QTKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CCSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence 3457899999998 5568999999999999999998764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=84.24 E-value=2.8 Score=33.83 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=42.3
Q ss_pred EEEEEcCCCcHHH--HHHHHHHHc----CCEEEEEEcChhHHHHHHHHHhhhc--CCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 144 IVIVTGANTGIGK--AIARELAKR----KAKVIMACRDLDKCEKARKEVVLES--KNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 144 ~vLITGassGIG~--aiA~~La~~----G~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
.+.|.|| |.+|. ++...++.. +.++++.+.++++++.....+.... .+....... -+|.+ +++
T Consensus 4 KI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~--~td~~---eaL--- 74 (171)
T d1obba1 4 KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK--TMNLD---DVI--- 74 (171)
T ss_dssp EEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE--ESCHH---HHH---
T ss_pred EEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE--eCChh---hcc---
Confidence 4566676 44454 455556543 4599999999998876544443211 111111111 12322 222
Q ss_pred HHhCCCeeEEEEccccCC
Q psy12836 216 KKENKKINVLINNAGVSG 233 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~~ 233 (429)
...|++|+.++...
T Consensus 75 ----~dad~Vv~~~~~g~ 88 (171)
T d1obba1 75 ----IDADFVINTAMVGG 88 (171)
T ss_dssp ----TTCSEEEECCCTTH
T ss_pred ----cCCCeEeeeccccc
Confidence 35699999988754
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.16 E-value=0.71 Score=41.13 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEE
Q psy12836 137 ETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMAC 173 (429)
Q Consensus 137 ~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~ 173 (429)
..+++||+++|-|- |-+|..+|+.|.+.|++|+.++
T Consensus 31 ~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vs 66 (293)
T d1hwxa1 31 TPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVG 66 (293)
T ss_dssp CSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence 45799999999987 7899999999999999998875
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.93 E-value=0.42 Score=40.27 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=37.6
Q ss_pred hhcCcccC-CCCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 128 VLGGAKYT-EETSARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 128 ~~~~~~~~-~~~~l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
+++...+. +..+++||.|+|.|++. -|..+|.++++++++++.+.|..
T Consensus 17 v~HS~~~~~~~~~~~gK~V~VvG~G~-Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 17 LYHTGNWPHEPVDFSGQRVGVIGTGS-SGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp EEEGGGCCSSCCCCBTCEEEEECCSH-HHHHHHHHHHHHBSEEEEEESSC
T ss_pred EEecCcCCCCCCCCCCCEEEEECCCc-cHHHHHHHHHhhhcccccccccc
Confidence 34444453 35689999999999865 48999999999999998888764
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=83.57 E-value=0.27 Score=41.11 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=27.5
Q ss_pred CEEEEEcCCCcHHH-----HHHHHHHHcCCEEEEEE
Q psy12836 143 KIVIVTGANTGIGK-----AIARELAKRKAKVIMAC 173 (429)
Q Consensus 143 K~vLITGassGIG~-----aiA~~La~~G~~Vil~~ 173 (429)
|.+.|||.++|.|+ .+|+.|+++|.+|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 78999999999998 56788999999999975
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=83.48 E-value=2 Score=34.39 Aligned_cols=74 Identities=19% Similarity=0.049 Sum_probs=40.5
Q ss_pred EEEEcCCCcHHHHHHHH-HHH-c----CCEEEEEEcChhHHHHHHHHHhhhcC-CceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 145 VIVTGANTGIGKAIARE-LAK-R----KAKVIMACRDLDKCEKARKEVVLESK-NKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 145 vLITGassGIG~aiA~~-La~-~----G~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
+.|.||+| +|...+-. +++ . +.+|++.+.++++++...+....... ...+. .- ++.+ +.+
T Consensus 3 IaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~---~t-~~~~---~~l----- 69 (162)
T d1up7a1 3 IAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL---IS-DTFE---GAV----- 69 (162)
T ss_dssp EEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEE---EC-SSHH---HHH-----
T ss_pred EEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEE---Ee-cCcc---ccc-----
Confidence 66778754 55544433 222 1 35899999999988755443332222 12221 11 2221 111
Q ss_pred hCCCeeEEEEccccCC
Q psy12836 218 ENKKINVLINNAGVSG 233 (429)
Q Consensus 218 ~~g~iD~lI~nAG~~~ 233 (429)
..-|++|..||...
T Consensus 70 --~~aDvVVita~~~~ 83 (162)
T d1up7a1 70 --VDAKYVIFQFRPGG 83 (162)
T ss_dssp --TTCSEEEECCCTTH
T ss_pred --CCCCEEEEecccCC
Confidence 24599999998753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=83.15 E-value=0.51 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcCh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDL 176 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~ 176 (429)
+.|.|+|.||+ --|+..|..|+++|++|.++.++.
T Consensus 29 ~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999984 559999999999999999998754
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.11 E-value=1.9 Score=34.07 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=53.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCC----ceEEEEEeeCCCHHHHHHHHHHHHHhCC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKN----KYVLCRKCDLASQESIRAFAEEVKKENK 220 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~----~~v~~~~~Dls~~~sv~~~~~~i~~~~g 220 (429)
+-+.|- |-+|.++|+.|++.|+.| ...|+.++..+..++....... .....+-..+.+.+.+....+.+.....
T Consensus 3 Ig~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~ 80 (156)
T d2cvza2 3 VAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR 80 (156)
T ss_dssp EEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred EEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence 344555 889999999999988765 5788887777666554221110 1122233456677888888888776655
Q ss_pred CeeEEEEcc
Q psy12836 221 KINVLINNA 229 (429)
Q Consensus 221 ~iD~lI~nA 229 (429)
+-.++|.+.
T Consensus 81 ~~~~iid~s 89 (156)
T d2cvza2 81 EGTYWVDAT 89 (156)
T ss_dssp TTEEEEECS
T ss_pred ccccccccc
Confidence 556666554
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.06 E-value=0.62 Score=41.89 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChh
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~ 177 (429)
+.|.++|.|| |--|+.+|..|+++|.+|.++.++..
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4688999998 55688999999999999999977653
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=82.68 E-value=3.8 Score=32.39 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=42.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHHHc--CCEEEEE--EcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy12836 143 KIVIVTGANTGIGKAIARELAKR--KAKVIMA--CRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKK 217 (429)
Q Consensus 143 K~vLITGassGIG~aiA~~La~~--G~~Vil~--~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~ 217 (429)
|.+.|-|+||.||..+..-+.++ .++|+.+ .+|.+.+.+...+.. + +.. -+.|++..+.+.+.+..
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~---p--k~v----~i~d~~~~~~l~~~l~~ 71 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFS---P--RYA----VMDDEASAKLLKTMLQQ 71 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHC---C--SEE----EESSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHh---h--ccc----ccccHHHHHHHHHHhhh
Confidence 67999999999999999988876 4676665 355566655555442 2 222 23455555555444433
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=82.54 E-value=2.8 Score=36.70 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=52.5
Q ss_pred CEEEEEcCC-CcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 143 KIVIVTGAN-TGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 143 K~vLITGas-sGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
..++=.|++ |-||.+++..+ ..++|++++-+.+.++-+.+.++...- .++.+++.|+.+.- ...+
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~-----------~~~~ 175 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSAL-----------AGQQ 175 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGG-----------TTCC
T ss_pred cceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccccccc-----------CCCc
Confidence 345655655 45666666543 357999999999888877776654433 35888999976531 1248
Q ss_pred eeEEEEccccCC
Q psy12836 222 INVLINNAGVSG 233 (429)
Q Consensus 222 iD~lI~nAG~~~ 233 (429)
+|++|.|.-+..
T Consensus 176 fDlIvsNPPYi~ 187 (274)
T d2b3ta1 176 FAMIVSNPPYID 187 (274)
T ss_dssp EEEEEECCCCBC
T ss_pred eeEEEecchhhh
Confidence 999999976553
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.52 E-value=1.7 Score=39.04 Aligned_cols=76 Identities=25% Similarity=0.232 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHh
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKA-KVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKE 218 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~ 218 (429)
.+||+||-.|++.|+ ++..++++|+ +|++++.++ .+..+.+.........++.++..|+.+.+ ..
T Consensus 37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~~ 102 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------LP 102 (328)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------Cc
Confidence 468999999999884 4566788897 688888764 44455555555555567889998887642 11
Q ss_pred CCCeeEEEEcc
Q psy12836 219 NKKINVLINNA 229 (429)
Q Consensus 219 ~g~iD~lI~nA 229 (429)
..+.|+++..-
T Consensus 103 ~~~~D~i~se~ 113 (328)
T d1g6q1_ 103 FPKVDIIISEW 113 (328)
T ss_dssp SSCEEEEEECC
T ss_pred ccceeEEEEEe
Confidence 24789988764
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.82 E-value=0.52 Score=41.21 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCcHHHHH-----HHHHHHcCCEEEEEEcChh
Q psy12836 141 RGKIVIVTGANTGIGKAI-----ARELAKRKAKVIMACRDLD 177 (429)
Q Consensus 141 ~gK~vLITGassGIG~ai-----A~~La~~G~~Vil~~R~~~ 177 (429)
.|+.++|+.|-||.|+.+ |..|+++|.+|.+++-++.
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~ 59 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 59 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 577888888899999976 7899999999999999875
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.62 E-value=0.49 Score=39.97 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCcHHH-----HHHHHHHHcCCEEEEEEcC
Q psy12836 142 GKIVIVTGANTGIGK-----AIARELAKRKAKVIMACRD 175 (429)
Q Consensus 142 gK~vLITGassGIG~-----aiA~~La~~G~~Vil~~R~ 175 (429)
||++.|+|+-||.|+ ++|..|+++|.+|.+++-+
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 689999999999998 5677889999999999865
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.07 E-value=0.58 Score=40.71 Aligned_cols=30 Identities=37% Similarity=0.440 Sum_probs=26.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCCEEEEEEcC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKAKVIMACRD 175 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~~Vil~~R~ 175 (429)
|+|.|| |-.|..+|.+|+++|.+|+++.+.
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 677776 678999999999999999999874
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=80.95 E-value=0.6 Score=41.17 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHcCC-EEEEEEcC
Q psy12836 145 VIVTGANTGIGKAIARELAKRKA-KVIMACRD 175 (429)
Q Consensus 145 vLITGassGIG~aiA~~La~~G~-~Vil~~R~ 175 (429)
|+|.|| |-+|.++|.+|+++|. +|.++.|+
T Consensus 4 ViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 4 IVIIGA-GIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 677777 6899999999999996 59999876
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.69 E-value=5.6 Score=30.79 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=56.0
Q ss_pred CCCEEEEEcCC---CcHHHHHHHHHHHcCCEEEEEEcChhHHH--HHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHH
Q psy12836 141 RGKIVIVTGAN---TGIGKAIARELAKRKAKVIMACRDLDKCE--KARKEVVLESKNKYVLCRKCDLASQESIRAFAEEV 215 (429)
Q Consensus 141 ~gK~vLITGas---sGIG~aiA~~La~~G~~Vil~~R~~~~~~--~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i 215 (429)
+-|.+.|.||| +..|..+++.|.+.|++|+.+........ .....+........+.. =....+.+.++++++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~---i~vp~~~~~~~~~e~ 94 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVD---LFVKPKLTMEYVEQA 94 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEE---ECSCHHHHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEE---EEeCHHHHHHHHHHH
Confidence 35899999999 57999999999999999999865432111 00111111111111111 124678888999998
Q ss_pred HHhCCCeeEEEEccccC
Q psy12836 216 KKENKKINVLINNAGVS 232 (429)
Q Consensus 216 ~~~~g~iD~lI~nAG~~ 232 (429)
.+. ++..++...|..
T Consensus 95 ~~~--g~k~v~~~~G~~ 109 (139)
T d2d59a1 95 IKK--GAKVVWFQYNTY 109 (139)
T ss_dssp HHH--TCSEEEECTTCC
T ss_pred HHh--CCCEEEEecccc
Confidence 876 356788877764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=80.50 E-value=3.9 Score=33.27 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhC
Q psy12836 140 ARGKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKEN 219 (429)
Q Consensus 140 l~gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~ 219 (429)
++++.||=.|++.|. .+..|+++|++|+.++-++..++.+.+......- ..+.+...|+.+.. --
T Consensus 29 ~~~grvLDiGcG~G~---~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~-----------~~ 93 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGR---NSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLT-----------FD 93 (198)
T ss_dssp SCSCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCC-----------CC
T ss_pred CCCCcEEEECCCCCH---HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheeccccc-----------cc
Confidence 345679999997663 6678899999999999999888876655543322 34677777876543 11
Q ss_pred CCeeEEEEcccc
Q psy12836 220 KKINVLINNAGV 231 (429)
Q Consensus 220 g~iD~lI~nAG~ 231 (429)
+..|+++++.-.
T Consensus 94 ~~fD~I~~~~~~ 105 (198)
T d2i6ga1 94 GEYDFILSTVVM 105 (198)
T ss_dssp CCEEEEEEESCG
T ss_pred ccccEEEEeeee
Confidence 468999876644
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.46 E-value=2.5 Score=35.79 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHHH-cC----CEEEEEEcChhHHHHHHHHHhhh----cCCceEEEEEeeCCCHHHHHHH
Q psy12836 141 RGKIVIVTGANTGIGKAIARELAK-RK----AKVIMACRDLDKCEKARKEVVLE----SKNKYVLCRKCDLASQESIRAF 211 (429)
Q Consensus 141 ~gK~vLITGassGIG~aiA~~La~-~G----~~Vil~~R~~~~~~~~~~~l~~~----~~~~~v~~~~~Dls~~~sv~~~ 211 (429)
.|.+||..|+++|--.++.-+++. .| .+|+.+.++++-.+.+.+.+... ....++.++..|..+.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~------ 153 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG------ 153 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc------
Confidence 578999999999988888887764 34 48999999988777665554321 1123578888886531
Q ss_pred HHHHHHhCCCeeEEEEccccC
Q psy12836 212 AEEVKKENKKINVLINNAGVS 232 (429)
Q Consensus 212 ~~~i~~~~g~iD~lI~nAG~~ 232 (429)
....++.|.++.+++..
T Consensus 154 ----~~~~~~fD~Iiv~~a~~ 170 (223)
T d1r18a_ 154 ----YPPNAPYNAIHVGAAAP 170 (223)
T ss_dssp ----CGGGCSEEEEEECSCBS
T ss_pred ----cccccceeeEEEEeech
Confidence 12346899999998864
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.23 E-value=1.7 Score=31.67 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCcHH-HHHHHHHHHcCCEEEEEEcChhH
Q psy12836 141 RGKIVIVTGANTGIG-KAIARELAKRKAKVIMACRDLDK 178 (429)
Q Consensus 141 ~gK~vLITGassGIG-~aiA~~La~~G~~Vil~~R~~~~ 178 (429)
+.|.+.+.|- +|+| .++|+.|.++|++|...++....
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~ 44 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGV 44 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence 4567777776 4555 56799999999999999987543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=80.07 E-value=2.8 Score=34.87 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEEcChhHHHHHHHHHhhhcCCceEEEEEeeCCCHHHHHHHHHHHHHhCCC
Q psy12836 142 GKIVIVTGANTGIGKAIARELAKRKAKVIMACRDLDKCEKARKEVVLESKNKYVLCRKCDLASQESIRAFAEEVKKENKK 221 (429)
Q Consensus 142 gK~vLITGassGIG~aiA~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dls~~~sv~~~~~~i~~~~g~ 221 (429)
+++||=.|++.|. .+..|+++|++|+.++-+++-++.+.+.+.... ..++.++.+|..+.. . ..+.
T Consensus 16 ~~rVLDiGcG~G~---~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-~~~i~~~~~d~~~l~-~---------~~~~ 81 (231)
T d1vl5a_ 16 NEEVLDVATGGGH---VANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-HQQVEYVQGDAEQMP-F---------TDER 81 (231)
T ss_dssp CCEEEEETCTTCH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEECCC-CCC-S---------CTTC
T ss_pred cCEEEEecccCcH---HHHHHHHhCCEEEEEECCHHHHhhhhhcccccc-ccccccccccccccc-c---------cccc
Confidence 5789999999884 356788999999999999988777665554433 346888888887642 0 1257
Q ss_pred eeEEEEccccC
Q psy12836 222 INVLINNAGVS 232 (429)
Q Consensus 222 iD~lI~nAG~~ 232 (429)
.|+++++..+.
T Consensus 82 fD~v~~~~~l~ 92 (231)
T d1vl5a_ 82 FHIVTCRIAAH 92 (231)
T ss_dssp EEEEEEESCGG
T ss_pred ccccccccccc
Confidence 89999887654
|