Psyllid ID: psy12858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVVNKII
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHccccEEEEEEEEccccccccccccccccEEEccEEEEEEcccccccccccEEEEEEEEcccccccccccEEccEEEEEEccEEEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHccccEEEEEEEEccccccccccccccccEEEccEEEEEEEccccccEcccEEEEEEEEccccccccHHHHHcccEEEEEccEEEEEEEEEcccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAedldpdtdvwlwgsepiyrndqfvgtitsagygFTMKKLIGlgyirhpseqnvtndfvtegtytldvagnrfqasahiypplsnvqvarpyvpqvvnkii
Flexible Loop (DISEMBL)
mftvkdyfigkaalqrqkdqgvQKRLVMFVAEDLDPDTDVWLWGSepiyrndqfVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYpplsnvqvarpyvpQVVNKII
Low Complexity Region (SEG)
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVVNKII
Disordered region (IsUnstruct)
***VKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVV****
Disordered Region (DISOPRED)
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVP***NKI*
Disordered Region (DISEMBL)
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVVNKII
Disordered Region (DISPRO)
*F**KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVVNKII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTVKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYVPQVVNKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q7TSQ8	878	Pyruvate dehydrogenase ph	yes	N/A	0.793	0.118	0.486	4e-22
O46504	878	Pyruvate dehydrogenase ph	yes	N/A	0.793	0.118	0.477	9e-22
Q8NCN5	879	Pyruvate dehydrogenase ph	yes	N/A	0.816	0.121	0.482	1e-21
Q9UL12	918	Sarcosine dehydrogenase,	no	N/A	0.770	0.110	0.405	2e-16
Q64380	919	Sarcosine dehydrogenase,	no	N/A	0.770	0.109	0.396	3e-16
Q99LB7	919	Sarcosine dehydrogenase,	no	N/A	0.770	0.109	0.386	4e-16
Q9UI17	866	Dimethylglycine dehydroge	no	N/A	0.480	0.072	0.352	8e-06
Q9DBT9	869	Dimethylglycine dehydroge	no	N/A	0.480	0.072	0.338	3e-05
Q63342	857	Dimethylglycine dehydroge	no	N/A	0.480	0.073	0.295	0.0003
Q7V9I2	373	Aminomethyltransferase OS	yes	N/A	0.503	0.176	0.366	0.0003

>sp|Q7TSQ8|PDPR_MOUSE Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Mus musculus GN=Pdpr PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN ++ G  TS+ Y +T+
Sbjct: 748 FIGRDALLQQKQTGVYKRLAMFILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTL 807

Query: 68  KKLIGLGYIRHPS-----EQNVTNDFVTEGTYTLDVAGNRFQASAHIYP 111
           ++ + LGY+ + S     EQ VT DF+  G Y +D+AG+RFQA A +YP
Sbjct: 808 ERHVCLGYVHNFSEDSGEEQVVTTDFINRGEYEIDIAGHRFQAKAKLYP 856

Decreases the sensitivity of PDP1 to magnesium ions, and this inhibition is reversed by the polyamine spermine.
Mus musculus (taxid: 10090)

>sp|O46504|PDPR_BOVIN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Bos taurus GN=PDPR PE=1 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 5/109 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           FIG+ AL +Q+  GV  RL MF+ +D D D D+W W  EPIYRN ++VG  TS+ YG+T+
Sbjct: 748 FIGRDALLQQRQNGVYNRLTMFILDDHDTDLDLWPWWGEPIYRNGRYVGKTTSSAYGYTL 807

Query: 68  KKLIGLGYIRHPS-----EQNVTNDFVTEGTYTLDVAGNRFQASAHIYP 111
           ++ + LG++ + S     EQ VT DF+  G Y +D+AG+RFQA A +YP
Sbjct: 808 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYP 856

Decreases the sensitivity of PDP1 to magnesium ions, and this inhibition is reversed by the polyamine spermine.

Bos taurus (taxid: 9913)

>sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 5/112 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+VG  TS+ Y +++
Sbjct: 749 FIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSAYSYSL 808

Query: 68  KKLIGLGYIRHPS-----EQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
           ++ + LG++ + S     EQ VT DF+  G Y +D+AG RFQA A +YP  S
Sbjct: 809 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGYRFQAKAKLYPVAS 860

Decreases the sensitivity of PDP1 to magnesium ions, and this inhibition is reversed by the polyamine spermine.

Homo sapiens (taxid: 9606)

>sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens GN=SARDH PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F+G+ AL++Q+  G+++RLV F  ED  P     ++G E I+RN Q VG +  A +GF +
Sbjct: 807 FLGREALEQQRAAGLRRRLVCFTMEDKVP-----MFGLEAIWRNGQVVGHVRRADFGFAI 861

Query: 68  KKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPL 113
            K I  GYI  PS   V+ DFV  G Y L+  G  + A AH+  P 
Sbjct: 862 DKTIAYGYIHDPSGGPVSLDFVKSGDYALERMGVTYGAQAHLKSPF 907

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 3

>sp|Q64380|SARDH_RAT Sarcosine dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Sardh PE=1 SV=2

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F+G+ AL++Q+  G+++RLV    E+     +V ++G E I+RN Q VG +  A +GFT+
Sbjct: 808 FLGREALEKQRATGLRRRLVCLTVEE-----EVPMFGLEAIWRNGQVVGHVRRADFGFTV 862

Query: 68  KKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPL 113
            K I  GYIR PS   V+ DFV  G Y L+  G  + A  H+  P 
Sbjct: 863 NKTIAYGYIRDPSGGPVSLDFVKNGDYALERMGVTYAAQVHLKSPF 908

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 3

>sp|Q99LB7|SARDH_MOUSE Sarcosine dehydrogenase, mitochondrial OS=Mus musculus GN=Sardh PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F+G+ AL++Q+  G+++RL+    E+     +V ++G E I+RN Q VG +  A +GFT+
Sbjct: 808 FLGREALEKQRATGLRRRLICLTVEE-----EVPMFGLEAIWRNGQVVGHVRRADFGFTV 862

Query: 68  KKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPL 113
            K I  GYIR PS   V+ DFV  G Y L+  G  + A  H+  P 
Sbjct: 863 NKTIAYGYIRDPSGGPVSLDFVKNGEYALERMGVTYAAQVHLKSPF 908

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 3

>sp|Q9UI17|M2GD_HUMAN Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens GN=DMGDH PE=1 SV=2

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)

Query: 8   FIGKAALQRQKDQGVQKRLVM--FVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGF 65
           FIGK AL++ K +G+++RLV      +D+DP+      G+E I+ N + VG  TS  Y +
Sbjct: 754 FIGKQALKQIKAKGLKRRLVCLTLATDDVDPE------GNESIWYNGKVVGNTTSGSYSY 807

Query: 66  TMKKLIGLGYI 76
           +++K +   Y+
Sbjct: 808 SIQKSLAFAYV 818

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9DBT9|M2GD_MOUSE Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus GN=Dmgdh PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 8   FIGKAALQRQKDQGVQKRLVMF--VAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGF 65
           FIGK AL++ K +G+++RLV      +D+DP+      G+E I+   + VG  TS  Y +
Sbjct: 747 FIGKQALKQIKTEGLKRRLVCLTVATDDVDPE------GNESIWYKGKVVGNTTSGSYSY 800

Query: 66  TMKKLIGLGYI 76
           +++K +   Y+
Sbjct: 801 SIQKSLAFAYV 811

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 4

>sp|Q63342|M2GD_RAT Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dmgdh PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 8/71 (11%)

Query: 8   FIGKAALQRQKDQGVQKRLVM--FVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGF 65
           F GK AL++ K +G+++RLV      +D+DP+      G+E ++   + +G  TS  Y +
Sbjct: 747 FTGKQALKQIKAKGLKRRLVCLTLATDDVDPE------GNESVWYKGKVIGNTTSGSYSY 800

Query: 66  TMKKLIGLGYI 76
           +++K +   Y+
Sbjct: 801 SIQKSLAFAYV 811

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 8

EC: .

EC: 4

>sp|Q7V9I2|GCST_PROMA Aminomethyltransferase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=gcvT PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 6   DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGF 65
           D FIGKAAL +Q ++G+ K+LV    E       +   G + +++N +FVG ITS  +  
Sbjct: 274 DEFIGKAALVKQTNEGINKKLVALKIE----GRAIARKGYQIMFKN-KFVGEITSGSWSP 328

Query: 66  TMKKLIGLGYI 76
           T+ + I L Y+
Sbjct: 329 TLNEGIALAYL 339

The glycine cleavage system catalyzes the degradation of glycine.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
328722668	889	PREDICTED: pyruvate dehydrogenase phosph	0.961	0.141	0.528	2e-35
328722670	899	PREDICTED: pyruvate dehydrogenase phosph	0.961	0.140	0.528	3e-35
383865705	916	PREDICTED: pyruvate dehydrogenase phosph	0.916	0.131	0.530	1e-30
345491156	901	PREDICTED: pyruvate dehydrogenase phosph	0.938	0.136	0.507	1e-30
380021100	876	PREDICTED: pyruvate dehydrogenase phosph	0.916	0.136	0.484	3e-29
307184995	919	Pyruvate dehydrogenase phosphatase regul	0.938	0.133	0.507	4e-29
157131385	853	nad dehydrogenase [Aedes aegypti] gi|108	0.938	0.144	0.477	5e-29
157131383	852	nad dehydrogenase [Aedes aegypti] gi|108	0.938	0.144	0.477	5e-29
270014463	877	hypothetical protein TcasGA2_TC001737 [T	0.938	0.140	0.484	1e-28
157131387	850	nad dehydrogenase [Aedes aegypti] gi|108	0.916	0.141	0.480	2e-28

>gi|328722668|ref|XP_003247632.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform 1 [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 98/140 (70%), Gaps = 14/140 (10%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+YFIGK ALQRQKDQG+ K+LVMF+ +DLDPD D+W WG EPIYRN +FVGT+TSAGYG
Sbjct: 747 KEYFIGKFALQRQKDQGITKKLVMFILDDLDPDKDIWSWGLEPIYRNGKFVGTVTSAGYG 806

Query: 65  FTMKKLIGLGYIRHPSEQN-------VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSN 115
           FTM+KL+ L YIR P   N       +TND++   T  Y +D+AG RF  +  I+ P  N
Sbjct: 807 FTMEKLVCLAYIRRPFTDNRNRNHMVITNDYILSPTAKYEIDIAGTRFPVTPKIHTPCVN 866

Query: 116 VQVAR-----PYVPQVVNKI 130
           + + +      YVP+V+++I
Sbjct: 867 INMQKVSDDSQYVPKVISQI 886

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722670|ref|XP_003247633.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 98/140 (70%), Gaps = 14/140 (10%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+YFIGK ALQRQKDQG+ K+LVMF+ +DLDPD D+W WG EPIYRN +FVGT+TSAGYG
Sbjct: 757 KEYFIGKFALQRQKDQGITKKLVMFILDDLDPDKDIWSWGLEPIYRNGKFVGTVTSAGYG 816

Query: 65  FTMKKLIGLGYIRHPSEQN-------VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSN 115
           FTM+KL+ L YIR P   N       +TND++   T  Y +D+AG RF  +  I+ P  N
Sbjct: 817 FTMEKLVCLAYIRRPFTDNRNRNHMVITNDYILSPTAKYEIDIAGTRFPVTPKIHTPCVN 876

Query: 116 VQVAR-----PYVPQVVNKI 130
           + + +      YVP+V+++I
Sbjct: 877 INMQKVSDDSQYVPKVISQI 896

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865705|ref|XP_003708313.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Megachile rotundata]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 89/132 (67%), Gaps = 12/132 (9%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+YFIGK ALQ QK+QGV KRLV+FV  +LD + DVW WGSEPIYRN +FVGT+TSAGYG
Sbjct: 768 KEYFIGKFALQYQKEQGVSKRLVLFVVNELDVNKDVWPWGSEPIYRNSEFVGTVTSAGYG 827

Query: 65  FTMKKLIGLGYIRHPSEQN-------VTNDFVTEGT--YTLDVAGNRFQASAHIYP---P 112
           F  +K I LG+I  P   +       VT DF+ E T  Y +D+AG RF A  HI+P   P
Sbjct: 828 FATEKHICLGFISCPESTHIQSNTNVVTTDFIMEPTARYEIDIAGTRFPAKPHIHPLPIP 887

Query: 113 LSNVQVARPYVP 124
             + ++ + Y+P
Sbjct: 888 AWSGKLNKKYIP 899

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491156|ref|XP_001607504.2| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Nasonia vitripennis]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 91/132 (68%), Gaps = 9/132 (6%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+YFIGK ALQRQK++GV KRLV+FV  +LD + DVW WG EP+YRN +FVGT+TSAG+G
Sbjct: 761 KEYFIGKYALQRQKERGVTKRLVLFVINNLDLNKDVWAWGGEPLYRNGEFVGTVTSAGHG 820

Query: 65  FTMKKLIGLGYIRHPSEQN-------VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSN 115
           F + KLI LG+I HP   N       VTN+F+T+ +  Y +D+AG+RF  + HI+     
Sbjct: 821 FNIGKLICLGFIGHPGYYNSQDENRVVTNEFITDSSAVYEIDIAGHRFPLTPHIHSLSFT 880

Query: 116 VQVARPYVPQVV 127
              ++ Y+P  V
Sbjct: 881 SNKSKKYIPTPV 892

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021100|ref|XP_003694412.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Apis florea]

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 12/132 (9%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+YFIGK ALQ QK+QGV KRLV+F+  +LD + ++W WG EP+YRN++FVGT+TSAGYG
Sbjct: 734 KEYFIGKFALQHQKEQGVSKRLVLFIVNELDINKNIWPWGGEPVYRNNEFVGTVTSAGYG 793

Query: 65  FTMKKLIGLGYIRHPSEQN-------VTNDFVTEGT--YTLDVAGNRFQASAHIYP---P 112
           F  +K I LG+I  P  +        VT DF+ E    Y +D+AG RF    HI+P   P
Sbjct: 794 FATEKHICLGFISVPKSRYVQTNANIVTTDFIMESKTRYEIDIAGTRFPVKPHIHPLPIP 853

Query: 113 LSNVQVARPYVP 124
             N ++ + Y+P
Sbjct: 854 TLNNKLNKKYIP 865

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184995|gb|EFN71224.1| Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial [Camponotus floridanus]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 11/134 (8%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           ++YFIGK+ALQRQK +GV KRLV+FV   +D + DVW WG EP+YRN +FVGT+TSAGYG
Sbjct: 777 QNYFIGKSALQRQKTEGVTKRLVLFVLNGMDLNKDVWAWGGEPLYRNGEFVGTVTSAGYG 836

Query: 65  FTMKKLIGLGYI-----RHPSEQNV-TNDFVTEGT--YTLDVAGNRFQASAHIYP---PL 113
           F  +KLI LG+I     RH  E +V T DF+ + T  Y +D+AG RF    HI+P   P+
Sbjct: 837 FVTEKLICLGFISLPKTRHEQEIHVITTDFIMDPTARYEIDIAGTRFPVKPHIHPLPIPV 896

Query: 114 SNVQVARPYVPQVV 127
            + +  + Y+P  V
Sbjct: 897 LSSKSNQKYIPTPV 910

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131385|ref|XP_001662223.1| nad dehydrogenase [Aedes aegypti] gi|108871548|gb|EAT35773.1| AAEL012077-PA, partial [Aedes aegypti]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 90/134 (67%), Gaps = 11/134 (8%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+ F+G+AAL+RQK  G+ KRLV+F  ED+D D DVW WG EPIYRN++F GT+TSAGYG
Sbjct: 712 KENFLGRAALERQKRDGLTKRLVLFHVEDIDIDKDVWPWGGEPIYRNNEFCGTVTSAGYG 771

Query: 65  FTMKKLIGLGYIRHPSEQN---VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSNVQ-- 117
           F  +KLI LGYI  PS      +T +F+ + +  Y +D+AG +F+ + HI+P  ++ +  
Sbjct: 772 FASQKLICLGYISRPSSNESSVITTEFIMDKSAVYHIDIAGGKFRLTQHIHPKATSTKSM 831

Query: 118 ----VARPYVPQVV 127
               + R Y P VV
Sbjct: 832 EESDLRRTYRPTVV 845

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131383|ref|XP_001662222.1| nad dehydrogenase [Aedes aegypti] gi|108871547|gb|EAT35772.1| AAEL012077-PB, partial [Aedes aegypti]

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 90/134 (67%), Gaps = 11/134 (8%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+ F+G+AAL+RQK  G+ KRLV+F  ED+D D DVW WG EPIYRN++F GT+TSAGYG
Sbjct: 711 KENFLGRAALERQKRDGLTKRLVLFHVEDIDIDKDVWPWGGEPIYRNNEFCGTVTSAGYG 770

Query: 65  FTMKKLIGLGYIRHPSEQN---VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSNVQ-- 117
           F  +KLI LGYI  PS      +T +F+ + +  Y +D+AG +F+ + HI+P  ++ +  
Sbjct: 771 FASQKLICLGYISRPSSNESSVITTEFIMDKSAVYHIDIAGGKFRLTQHIHPKATSTKSM 830

Query: 118 ----VARPYVPQVV 127
               + R Y P VV
Sbjct: 831 EESDLRRTYRPTVV 844

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014463|gb|EFA10911.1| hypothetical protein TcasGA2_TC001737 [Tribolium castaneum]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 92/130 (70%), Gaps = 7/130 (5%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           ++ FIGK ALQ+QK+ GV K+LV F   D+DPD D+W WG EP+YRN++FVGT+TSAGYG
Sbjct: 740 RENFIGKPALQQQKENGVTKQLVFFHLNDIDPDKDIWPWGGEPLYRNNEFVGTVTSAGYG 799

Query: 65  FTMKKLIGLGYIRHP---SEQNVTNDFV--TEGTYTLDVAGNRFQASAHIY-PPLSN-VQ 117
           F+  KLI LG+IR P   S + +T++++   E  Y +D+AG RF    +++ PP++N V 
Sbjct: 800 FSADKLICLGFIRRPKSSSVKTITSEYILSKEAKYEIDIAGTRFSIMPYLHAPPVTNTVN 859

Query: 118 VARPYVPQVV 127
           + + Y P V+
Sbjct: 860 LGQKYRPTVI 869

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131387|ref|XP_001662224.1| nad dehydrogenase [Aedes aegypti] gi|108871549|gb|EAT35774.1| AAEL012077-PC, partial [Aedes aegypti]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 88/131 (67%), Gaps = 11/131 (8%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F+G+AAL+RQK  G+ KRLV+F  ED+D D DVW WG EPIYRN++F GT+TSAGYGF  
Sbjct: 712 FLGRAALERQKRDGLTKRLVLFHVEDIDIDKDVWPWGGEPIYRNNEFCGTVTSAGYGFAS 771

Query: 68  KKLIGLGYIRHPSEQN---VTNDFVTEGT--YTLDVAGNRFQASAHIYPPLSNVQ----- 117
           +KLI LGYI  PS      +T +F+ + +  Y +D+AG +F+ + HI+P  ++ +     
Sbjct: 772 QKLICLGYISRPSSNESSVITTEFIMDKSAVYHIDIAGGKFRLTQHIHPKATSTKSMEES 831

Query: 118 -VARPYVPQVV 127
            + R Y P VV
Sbjct: 832 DLRRTYRPTVV 842

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
UNIPROTKB|F1S433	537	LOC100525224 "Uncharacterized	0.793	0.193	0.513	1.3e-25
UNIPROTKB|B3KSE1	224	PDPR "Pyruvate dehydrogenase p	0.816	0.477	0.482	2e-24
UNIPROTKB|B7ZAR9	237	PDPR "cDNA, FLJ79283, highly s	0.816	0.451	0.482	2e-24
RGD|1308307	878	Pdpr "pyruvate dehydrogenase p	0.816	0.121	0.491	6.8e-24
UNIPROTKB|F1N4M3	878	PDPR "Pyruvate dehydrogenase p	0.793	0.118	0.486	8.8e-24
MGI|MGI:2442188	878	Pdpr "pyruvate dehydrogenase p	0.816	0.121	0.482	1.1e-23
UNIPROTKB|F1NG59	887	PDPR "Uncharacterized protein"	0.793	0.117	0.467	1.9e-23
UNIPROTKB|A8MT40	779	PDPR "Pyruvate dehydrogenase p	0.816	0.137	0.482	2.4e-23
UNIPROTKB|F1P7E6	850	PDPR "Uncharacterized protein"	0.816	0.125	0.473	2.8e-23
UNIPROTKB|O46504	878	PDPR "Pyruvate dehydrogenase p	0.793	0.118	0.477	3e-23

UNIPROTKB|F1S433 LOC100525224 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 296 (109.3 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 56/109 (51%), Positives = 75/109 (68%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+AAL  QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+VG  TS+ YG+T+
Sbjct:   407 FIGRAALLEQKQNGVYKRLTMFILDDHDTDLDLWPWWGEPIYRNGQYVGKTTSSAYGYTL 466

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYP 111
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP
Sbjct:   467 ERHVCLGFVHNFSEDTGEAQVVTADFINRGEYEIDIAGHRFQAKAKLYP 515

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

UNIPROTKB|B3KSE1 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/112 (48%), Positives = 74/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+VG  TS+ Y +++
Sbjct:    94 FIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSAYSYSL 153

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG RFQA A +YP  S
Sbjct:   154 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGYRFQAKAKLYPVAS 205

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|B7ZAR9 PDPR "cDNA, FLJ79283, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/112 (48%), Positives = 74/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+VG  TS+ Y +++
Sbjct:   107 FIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSAYSYSL 166

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG RFQA A +YP  S
Sbjct:   167 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGYRFQAKAKLYPVAS 218

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1308307 Pdpr "pyruvate dehydrogenase phosphatase regulatory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 55/112 (49%), Positives = 75/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +QK  GV KRLVMF+ +D D D D+W W  EPIYRN ++ G  TS+ Y +T+
Sbjct:   748 FIGRDALLQQKQTGVYKRLVMFILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTL 807

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LGY+ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP  S
Sbjct:   808 ERHVCLGYVHNFSEDSGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYPVTS 859

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1N4M3 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 284 (105.0 bits), Expect = 8.8e-24, P = 8.8e-24
 Identities = 53/109 (48%), Positives = 75/109 (68%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +Q+  GV KRL MF+ +D D D D+W W  EPIYRN ++VG  TS+ YG+T+
Sbjct:   748 FIGRDALLQQRQNGVYKRLTMFILDDHDTDLDLWPWWGEPIYRNGRYVGKTTSSAYGYTL 807

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYP 111
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP
Sbjct:   808 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYP 856

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

MGI|MGI:2442188 Pdpr "pyruvate dehydrogenase phosphatase regulatory subunit" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/112 (48%), Positives = 74/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN ++ G  TS+ Y +T+
Sbjct:   748 FIGRDALLQQKQTGVYKRLAMFILDDHDTDLDLWPWWGEPIYRNGKYAGKTTSSAYSYTL 807

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LGY+ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP  S
Sbjct:   808 ERHVCLGYVHNFSEDSGEEQVVTTDFINRGEYEIDIAGHRFQAKAKLYPVTS 859

GO:0003674 "molecular_function" evidence=ND

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1NG59 PDPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 51/109 (46%), Positives = 72/109 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL  QK  GV KR  MF+ ED D D D+W W  EPI+RN ++VG  TS+ Y +T+
Sbjct:   757 FIGQEALLEQKQNGVYKRFTMFILEDHDTDMDLWPWWGEPIFRNGRYVGKTTSSAYSYTL 816

Query:    68 KKLIGLGYIRHPSEQN-----VTNDFVTEGTYTLDVAGNRFQASAHIYP 111
             ++ + LG+++H  E+      VT DF+ +G Y +D+AG RFQA A +YP
Sbjct:   817 ERHVCLGFVQHFDEKTGEELVVTTDFINQGEYEIDIAGQRFQAKAKLYP 865

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A8MT40 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 54/112 (48%), Positives = 74/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+VG  TS+ Y +++
Sbjct:   649 FIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSAYSYSL 708

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG RFQA A +YP  S
Sbjct:   709 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGYRFQAKAKLYPVAS 760

GO:0004047 "aminomethyltransferase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P7E6 PDPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 53/112 (47%), Positives = 74/112 (66%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             F+G+ AL +QK  GV KRL MF+ +D D D D+W W  EPIYRN Q+ G  TS+ Y +T+
Sbjct:   697 FMGRDALLQQKQNGVYKRLTMFILDDHDTDLDLWPWWGEPIYRNGQYAGKTTSSAYSYTL 756

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP  S
Sbjct:   757 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYPVTS 808

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

UNIPROTKB|O46504 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 52/109 (47%), Positives = 74/109 (67%)

Query:     8 FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
             FIG+ AL +Q+  GV  RL MF+ +D D D D+W W  EPIYRN ++VG  TS+ YG+T+
Sbjct:   748 FIGRDALLQQRQNGVYNRLTMFILDDHDTDLDLWPWWGEPIYRNGRYVGKTTSSAYGYTL 807

Query:    68 KKLIGLGYIRHPSE-----QNVTNDFVTEGTYTLDVAGNRFQASAHIYP 111
             ++ + LG++ + SE     Q VT DF+  G Y +D+AG+RFQA A +YP
Sbjct:   808 ERHVCLGFVHNFSEDTGEEQVVTADFINRGEYEIDIAGHRFQAKAKLYP 856

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006546 "glycine catabolic process" evidence=IEA

GO:0004047 "aminomethyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
pfam08669	95	pfam08669, GCV_T_C, Glycine cleavage T-protein C-t	5e-19
COG0404	379	COG0404, GcvT, Glycine cleavage system T protein (	3e-16
PRK00389	359	PRK00389, gcvT, glycine cleavage system aminomethy	1e-09
PRK12486	368	PRK12486, dmdA, putative dimethyl sulfoniopropiona	3e-05
TIGR00528	362	TIGR00528, gcvT, glycine cleavage system T protein	2e-04

>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain

 Score = 75.3 bits (186), Expect = 5e-19
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 8   FIGKAALQRQKDQGV-QKRLVMFVAEDLDPDTDVWLWGSEPIYRND-QFVGTITSAGYGF 65
           FIGK AL RQK +GV ++RLV  + +      D      EP+   D + VG +TS  Y  
Sbjct: 3   FIGKEALARQKAEGVVRRRLVGLLLDG-----DGPPREGEPVLAADGEVVGEVTSGTYSP 57

Query: 66  TMKKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQA 105
           T+ K I L Y+R         +    GT   +++ G R  A
Sbjct: 58  TLGKNIALAYVR--------TEHAEPGTEVEVEIRGKRVPA 90

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 95

>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRND--QFVGTITSAG 62
           KD FIGKAAL R+K +GV+++LV    +D  P     L G EP+   D    VG +TS  
Sbjct: 271 KDDFIGKAALLREKAKGVRRKLVGLKLDDKGPV----LRGGEPVLDADGEVEVGEVTSGT 326

Query: 63  YGFTMKKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQASAHIYPP 112
           +  T+ K I L Y+         +D+   GT   +++ G R  A     P 
Sbjct: 327 FSPTLGKSIALAYVD--------SDYAKPGTELEVEIRGKRVPARVVKPPF 369

Length = 379

>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 2   FTVKDYFIGKAALQRQKDQGVQKRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTI 58
              K  FIG+ AL+ QK+ GV+++LV    E+                P+  + + +G +
Sbjct: 258 LEEKRDFIGREALEAQKEAGVERKLVGLELEERGIPRHGY--------PVLADGEEIGEV 309

Query: 59  TSAGYGFTMKKLIGLGYI 76
           TS  +  T+ K I L Y+
Sbjct: 310 TSGTFSPTLGKSIALAYV 327

Length = 359

>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 8   FIGKAALQRQKDQGVQK--RLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGF 65
            IGK AL R   +G QK  R +    E + P    W     P+   D  VG +TSA Y  
Sbjct: 273 CIGKDALLRVAKEGPQKQIRGIKIGGERIPPCDRAW-----PLLAGDNRVGQVTSAAYSP 327

Query: 66  TMKKLIGLGYIR 77
             +  + +G +R
Sbjct: 328 DFQTNVAIGMVR 339

Length = 368

>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFV-AEDLDPDTDVWLWGSEPIYRND--QFVGTITSA 61
           K  FIG+A L  QK+ G +K+LV     E              PI+  +    VG +TS 
Sbjct: 262 KYDFIGRAVLMEQKENGTEKKLVGLEMLEKGIARNGY------PIFLPNGETEVGIVTSG 315

Query: 62  GYGFTMKKLIGLGYI 76
               T+ K IGL Y+
Sbjct: 316 TASPTLGKNIGLAYV 330

The glycine cleavage system T protein (GcvT) is also known as aminomethyltransferase (EC 2.1.2.10). It works with the H protein (GcvH), the P protein (GcvP), and lipoamide dehydrogenase. The reported sequence of the member from Aquifex aeolicus starts about 50 residues downstream of the start of other members of the family (perhaps in error); it scores below the trusted cutoff. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide [Energy metabolism, Amino acids and amines]. Length = 362

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
COG0404	379	GcvT Glycine cleavage system T protein (aminomethy	99.94
PF08669	95	GCV_T_C: Glycine cleavage T-protein C-terminal bar	99.94
KOG2844|consensus	856		99.91
PRK12486	368	dmdA putative dimethyl sulfoniopropionate demethyl	99.9
PRK13579	370	gcvT glycine cleavage system aminomethyltransferas	99.9
PLN02319	404	aminomethyltransferase	99.88
PRK00389	359	gcvT glycine cleavage system aminomethyltransferas	99.87
TIGR00528	361	gcvT glycine cleavage system T protein. Eukaryotic	99.85
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.85
KOG2770|consensus	401		99.77
PRK09559	327	putative global regulator; Reviewed	98.76
TIGR03317	67	ygfZ_signature folate-binding protein YgfZ. YgfZ i	97.69
COG0354	305	Predicted aminomethyltransferase related to GcvT [	97.47
KOG2929|consensus	348		96.17
PF02470	81	MCE: mce related protein; InterPro: IPR003399 This	81.9

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]

Probab=99.94  E-value=1.6e-26  Score=188.67  Aligned_cols=106  Identities=34%  Similarity=0.527  Sum_probs=94.5

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeE-eEEEecceeccccCCeEEEEEecCCCCC
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQF-VGTITSAGYGFTMKKLIGLGYIRHPSEQ   82 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~-VG~vTSg~ySp~l~~~Iala~v~~~~~~   82 (131)
                      |.|||||+||++++++|.+|+||||.+++++.    .+++|++|+ .+|+. ||+|||++|||+||++||||||+.+   
T Consensus       271 k~dFiGk~al~~~k~~g~~r~lVgl~~~~~~~----~~~~g~~v~~~~g~~~vG~VTSg~~Sptlg~~IAla~v~~~---  343 (379)
T COG0404         271 KDDFIGKAALLREKAKGVRRKLVGLKLDDKGP----VLRGGEPVLDADGEVEVGEVTSGTFSPTLGKSIALAYVDSD---  343 (379)
T ss_pred             CcCCcCHHHHHhhhhcCCceEEEEEEEcCCCC----CCCCCCeEEecCCCEeEEEEeeccccccCCCeeEEEEechh---
Confidence            34899999999999988877899999999874    289999999 68884 9999999999999999999999974   


Q ss_pred             CcccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858         83 NVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY  122 (131)
Q Consensus        83 ~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~  122 (131)
                          ....|++++|++++++++|+|+ .+|||||+++|++
T Consensus       344 ----~~~~G~~~~v~i~~~~~~a~V~-~~pf~dp~~~r~~  378 (379)
T COG0404         344 ----YAKPGTELEVEIRGKRVPARVV-KPPFYDPEGERLR  378 (379)
T ss_pred             ----hccCCcEEEEEECCeEEEEEEe-cCCCcCccccccC
Confidence                2246889999999999999999 8999999999876

>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=99.94  E-value=5.2e-26  Score=152.46  Aligned_cols=91  Identities=34%  Similarity=0.543  Sum_probs=79.6

Q ss_pred             CCCccHHHHHHhHhcCC-CeEEEEEEEecCCCCCCcccCCCCceee-CCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          6 DYFIGKAALQRQKDQGV-QKRLVMFVAEDLDPDTDVWLWGSEPIYR-NDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g~-~r~lvgl~~~~~~~~~~~~~~~g~~V~~-~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      +|||||+||++++.+|. +++||+|.+++...     +++|++|+. +|+.||+|||++|||+++++||||||+.+    
T Consensus         1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~~~~-----~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~~~----   71 (95)
T PF08669_consen    1 GDFIGQEALARQKARGVKRRRLVGLTLDGDAP-----PRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVDRE----   71 (95)
T ss_dssp             S-STTHHHHHHHHHHTTS-EEEEEEEESSSS-------STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEEGG----
T ss_pred             CCcCCHHHHHHHHhcCCCceEEEEEEECCccC-----CCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEECHH----
Confidence            48999999999999887 59999999985544     899999999 99999999999999999999999999873    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEE
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAH  108 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~  108 (131)
                         ....|+.++|+++|+.++|+|+
T Consensus        72 ---~~~~g~~l~v~~~g~~~~a~v~   93 (95)
T PF08669_consen   72 ---YAEPGTELEVEIRGKRVPATVV   93 (95)
T ss_dssp             ---GGSTTSEEEEEETTEEEEEEEE
T ss_pred             ---HcCCCCEEEEEECCEEEEEEEe
Confidence               3346889999999999999998

GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....

>KOG2844|consensus

Probab=99.91  E-value=6.7e-24  Score=181.01  Aligned_cols=113  Identities=47%  Similarity=0.776  Sum_probs=101.8

Q ss_pred             CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcc
Q psy12858          6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVT   85 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~   85 (131)
                      .|||||+||++|+++|++||||.|.+++.+.+    |++||+||+||+.||.+||+.||++++|.||++||+......|+
T Consensus       742 ~dFiGk~ALeqqra~GlkkrlV~l~l~d~d~~----~~G~E~I~rnG~~VG~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~  817 (856)
T KOG2844|consen  742 ADFIGKQALEQQKAEGLKKRLVCLTLDDHDPD----PWGGEPIYRNGQVVGNTTSAAYGYTLGKSVCLGYVHNFEEFPVS  817 (856)
T ss_pred             ccchhHHHHHHHHHhhhhheEEEEEecCCCCC----ccCCcceeeCCEEEeeeeeccceeeecceEEEEEecccccCccC
Confidence            69999999999999999999999999998775    89999999999999999999999999999999999864344567


Q ss_pred             cccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcCC
Q psy12858         86 NDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPYV  123 (131)
Q Consensus        86 ~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~~  123 (131)
                      .+|...+.++|++.|++++|++....|| +|...|-++
T Consensus       818 ~d~V~sg~yEvdi~Gkry~a~~~l~sP~-~pt~~r~~~  854 (856)
T KOG2844|consen  818 LDFVGSGEYEVDIAGKRYPAKANLHSPS-LPTEKRRKP  854 (856)
T ss_pred             HHHhcCCcEEEEecccccceeEEecCCC-CCcccccCC
Confidence            6777778999999999999999988898 888777654

>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed

Probab=99.90  E-value=2.7e-23  Score=169.13  Aligned_cols=97  Identities=21%  Similarity=0.185  Sum_probs=85.0

Q ss_pred             CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCccc-CCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCc
Q psy12858          6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWL-WGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNV   84 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~-~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v   84 (131)
                      +|||||+||++++++|.+||||+|+++++.++    + .++++|+.+|+.||+|||++|||+|+++||||||+.+     
T Consensus       271 ~~FiGkeal~r~~~~g~~rrlvgl~~~~~~~~----~~~~~~~V~~~g~~VG~vTS~~~sp~l~~~Iala~v~~~-----  341 (368)
T PRK12486        271 IGCIGKDALLRVAKEGPQKQIRGIKIGGERIP----PCDRAWPLLAGDNRVGQVTSAAYSPDFQTNVAIGMVRMT-----  341 (368)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEEEEEECCCCCC----CcCCceEEeeCCeEEEEEeccCcCcccCceEEEEEEChh-----
Confidence            37999999999988889999999999876552    2 2347899999999999999999999999999999873     


Q ss_pred             ccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858         85 TNDFVTEGTYTLDVAGNRFQASAHIYPPLS  114 (131)
Q Consensus        85 ~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~  114 (131)
                        ....|+.++|++++++++|+|+ .+|||
T Consensus       342 --~~~~g~~l~v~~~~~~~~a~v~-~~Pf~  368 (368)
T PRK12486        342 --HWDPGTGLEVETPDGMRPATVR-EGFWI  368 (368)
T ss_pred             --hcCCCCEEEEEECCceEEEEEe-CCCCC
Confidence              2246889999999999999999 89996

>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional

Probab=99.90  E-value=5.7e-23  Score=167.01  Aligned_cols=103  Identities=21%  Similarity=0.368  Sum_probs=90.1

Q ss_pred             CCCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeC-CeEeEEEecceeccccCCeEEEEEecCCCCC
Q psy12858          4 VKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRN-DQFVGTITSAGYGFTMKKLIGLGYIRHPSEQ   82 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~-g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~   82 (131)
                      .|.||+|||++++++.+|..+|+++|.+++...     +..|++|+.+ |+.||+|||++|||+++++||||||+.+   
T Consensus       266 ~KgcyiGqEalar~~~~G~~kr~v~l~~~~~~~-----~~~g~~v~~~~g~~VG~VtS~~~sp~l~~~iala~v~~~---  337 (370)
T PRK13579        266 EAGGFPGAKAILAALAKGASRRRVGLKPEGRAP-----VREGAPLFDDAGTEIGTVTSGGFGPSVGGPVAMGYVPAS---  337 (370)
T ss_pred             CCCCCcCHHHHHHHHhcCCCeEEEEEEECCccC-----CCCCCEEEcCCCceEEEEeecCcchhcCCeEEEEEEChh---
Confidence            356999999999998889999999999975433     6789999987 5999999999999999999999999873   


Q ss_pred             CcccccccCcEEEEEECCeEEEEEEEeCCCccCCCCC
Q psy12858         83 NVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVA  119 (131)
Q Consensus        83 ~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~  119 (131)
                          ....|+.++|++.|++++|+|+ ..|||+++..
T Consensus       338 ----~~~~g~~v~v~~~g~~~~a~v~-~~Pf~~~~~~  369 (370)
T PRK13579        338 ----LAAPGTAVFAEVRGKRLPVTVH-ALPFVPHRYK  369 (370)
T ss_pred             ----hcCCCCEEEEEECCEEEEEEEE-cCCcccCCcc
Confidence                1246889999999999999999 8999988743

>PLN02319 aminomethyltransferase

Probab=99.88  E-value=2.9e-22  Score=164.70  Aligned_cols=99  Identities=23%  Similarity=0.420  Sum_probs=85.6

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |.||||||+|++++.+|.++|+|+|.. +..+     +..|+.|+ .+|+.||+|||++|||+++++||||||+.+    
T Consensus       300 Kg~fiGqEalar~~~~g~~rrlvgl~~-~~~~-----~~~g~~v~~~~g~~VG~VTS~~~Sp~l~~~Iala~v~~~----  369 (404)
T PLN02319        300 EGGFLGADVILKQLKEGVSRRRVGFIS-SGAP-----ARSHSEILDESGEKIGEVTSGGFSPCLKKNIAMGYVKSG----  369 (404)
T ss_pred             CCCCcCHHHHHHHHhcCCCeEEEEEEE-CCcc-----CCCCCEEEeCCCCEEEEEeeecccccCCceEEEEEEChh----
Confidence            569999999999988899999999954 3334     56777777 478999999999999999999999999873    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCccCCC
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQ  117 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~  117 (131)
                         ....|+.++|+++|+.++|+|+ ..|||+|+
T Consensus       370 ---~~~~g~~v~v~~~g~~~~a~v~-~~Pf~~~~  399 (404)
T PLN02319        370 ---FHKAGTEVKVEVRGKMYDAVVT-KMPFVPTK  399 (404)
T ss_pred             ---hcCCCCEEEEEECCeEEEEEEE-CCCCcCcc
Confidence               2236889999999999999999 89999987

>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed

Probab=99.87  E-value=3.1e-21  Score=155.76  Aligned_cols=98  Identities=27%  Similarity=0.432  Sum_probs=88.6

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCc
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNV   84 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v   84 (131)
                      |.||+|||++++++..|.+||||+|.+++...     +..|++|+.+|+.||+|||++|||.++++||||+|+.      
T Consensus       261 Kgcy~GqE~var~~~~g~krrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~vts~~~s~~~~~~iala~l~~------  329 (359)
T PRK00389        261 KRDFIGREALEAQKEAGVERKLVGLELEERGI-----PRHGYPVLADGEEIGEVTSGTFSPTLGKSIALAYVPA------  329 (359)
T ss_pred             CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcC-----CCCCCEEeeCCcEEEEEeccCcccccCceEEEEEecC------
Confidence            77999999999998888999999999975433     7889999999999999999999999999999999987      


Q ss_pred             ccccccCcEEEEEECCeEEEEEEEeCCCccCCCC
Q psy12858         85 TNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQV  118 (131)
Q Consensus        85 ~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~  118 (131)
                        ++  |+.++|++.|++++|+|+ ..|||||+.
T Consensus       330 --~~--g~~~~v~~~~~~~~a~v~-~~p~~~~~~  358 (359)
T PRK00389        330 --GV--GDEVEVEIRGKQVPAKVV-KPPFVRRGK  358 (359)
T ss_pred             --CC--CCEEEEEECCeEEEEEEe-cCCCcCCCC
Confidence              22  788999999999999999 799999865

>TIGR00528 gcvT glycine cleavage system T protein

Probab=99.85  E-value=1.1e-20  Score=153.05  Aligned_cols=99  Identities=28%  Similarity=0.439  Sum_probs=87.3

Q ss_pred             CCCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceee-CC-eEeEEEecceeccccCCeEEEEEecCCCC
Q psy12858          4 VKDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYR-ND-QFVGTITSAGYGFTMKKLIGLGYIRHPSE   81 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~-~g-~~VG~vTSg~ySp~l~~~Iala~v~~~~~   81 (131)
                      +|.||+|||++++++..|..||+|++.+++...     +..|++|+. +| +.||.|||++|||+++++||||||+.+  
T Consensus       260 kKgcy~GqE~lar~~~~G~~krlv~l~~~~~~~-----~~~g~~v~~~~g~~~vG~vtS~~~s~~~g~~iala~v~~~--  332 (361)
T TIGR00528       260 AKRDFIGRAVLEEQKENGTEKKLVGLEMLEKGI-----ARNGYPVFFTNGNQHVGIVTSGTFSPTLGKNIGLAYVPSE--  332 (361)
T ss_pred             CCCCCcCHHHHHhHHhcCCCeEEEEEEECCCcC-----CCCCCEEEeCCCCeeEEEEeecCcchhcCceEEEEEEChh--
Confidence            467999999999999889999999999876444     788999997 76 999999999999999999999999973  


Q ss_pred             CCcccccccCcEEEEEECCeEEEEEEEeCCCccC
Q psy12858         82 QNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSN  115 (131)
Q Consensus        82 ~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~d  115 (131)
                           ....|+.++|++.|++++|+|+ ..|||+
T Consensus       333 -----~~~~g~~~~v~~~g~~~~a~v~-~~p~~~  360 (361)
T TIGR00528       333 -----TEKIGTTLIVQIRNKEYPIKVV-KPPFVR  360 (361)
T ss_pred             -----hcCCCCEEEEEECCeEEEEEEe-cCCCcC
Confidence                 2236889999999999999999 799975

Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.85  E-value=1.1e-20  Score=169.37  Aligned_cols=107  Identities=20%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             CCCCCccHHHHHHhHh-cCCCeEEEEEEEecCCCCCCcccCCCCceeeCC------eEeEEEecceeccccCCeEEEEEe
Q psy12858          4 VKDYFIGKAALQRQKD-QGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRND------QFVGTITSAGYGFTMKKLIGLGYI   76 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~-~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g------~~VG~vTSg~ySp~l~~~Iala~v   76 (131)
                      .|.|||||++|++++. .+++++||+|.+++.+..    ++.|..++.++      +.||+|||++|||+++++||||||
T Consensus       871 ~Kg~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~----~~~g~~v~~~~~~~~~~~~vG~VTS~~~sp~lg~~iaLa~v  946 (985)
T TIGR01372       871 KKPDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRR----LPEGAHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALV  946 (985)
T ss_pred             CCCCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCC----CCCCCEEEECCCcccCCCcEEEEeeeccchhcCCeEEEEEE
Confidence            3459999999998876 457999999998865321    56777777553      689999999999999999999999


Q ss_pred             cCCCCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858         77 RHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY  122 (131)
Q Consensus        77 ~~~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~  122 (131)
                      +.+       ....|+.++|++.|++++|+|+ .+|||||+++|++
T Consensus       947 ~~~-------~~~~G~~v~v~~~g~~~~a~v~-~~pf~dp~~~r~~  984 (985)
T TIGR01372       947 KGG-------RARHGETVYVPDLGRFIAVEIC-DPVFFDPEGTRLH  984 (985)
T ss_pred             Ccc-------ccCCCCEEEEEECCEEEEEEEe-ccCCCCCCCCCcC
Confidence            873       1236889999999999999999 8999999999986

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2770|consensus

Probab=99.77  E-value=2.7e-18  Score=137.52  Aligned_cols=96  Identities=21%  Similarity=0.289  Sum_probs=86.3

Q ss_pred             CCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceeeC-CeEeEEEecceeccccCCeEEEEEecCCCCCCc
Q psy12858          7 YFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYRN-DQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNV   84 (131)
Q Consensus         7 dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~-g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v   84 (131)
                      ||.|.+.+++|..++ ..+|+|||.+.+..+     ++.|.+|+.+ |+.||.|||++.||+++++||||||+..     
T Consensus       297 ~f~Ga~~I~~qLk~~~~~~RrvGl~~~~~p~-----ar~gs~I~~~~g~kVG~vTSg~~sptl~kniamgYV~k~-----  366 (401)
T KOG2770|consen  297 DFPGAEVILKQLKDGGISRRRVGLNLSAKPP-----ARSGSAIFVDDGTKVGQVTSGCPSPTLGKNIAMGYVKKG-----  366 (401)
T ss_pred             CCCcHHHHHHHhhcCCcceEEEeeeccCCCC-----CCCCCeeEcCCCceEeeEccCCCCCCcccceeEEEeecc-----
Confidence            899999999988766 899999999988644     7999999987 7999999999999999999999999984     


Q ss_pred             ccccccCcEEEEEECCeEEEEEEEeCCCccC
Q psy12858         85 TNDFVTEGTYTLDVAGNRFQASAHIYPPLSN  115 (131)
Q Consensus        85 ~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~d  115 (131)
                        ....|+.+.|.++++.++++|+ ++||+.
T Consensus       367 --~~~~Gtkv~v~vr~k~~~~~Vs-kmPfV~  394 (401)
T KOG2770|consen  367 --YHKIGTKVLVKVRNKLYPAEVS-KMPFVP  394 (401)
T ss_pred             --ccCCCCEEEEEecCcccceEEE-eccccc
Confidence              3358999999999999999999 899953

>PRK09559 putative global regulator; Reviewed

Probab=98.76  E-value=1.1e-07  Score=76.41  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=66.9

Q ss_pred             CCCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCcee--eC--CeEeEEEecceeccccCCeEEEEEecC
Q psy12858          4 VKDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIY--RN--DQFVGTITSAGYGFTMKKLIGLGYIRH   78 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~--~~--g~~VG~vTSg~ySp~l~~~Iala~v~~   78 (131)
                      .|.||+|+|++.|.+..| .+|++++|.+++..+     ++.|++|.  .+  ++.||.|+|++-++. +...+++.++.
T Consensus       225 ~KGCY~GQE~vAR~~~~G~~krrl~~l~~~~~~~-----~~~g~~i~~~~~~~~~~~G~v~s~~~~~~-~~~~~l~v~~~  298 (327)
T PRK09559        225 KKGCYTGQEMVARAKFRGANKRALWWLAGKASRV-----PEAGEDLELKMGENWRRTGTVLAAVQLDD-GQVWVQVVMNN  298 (327)
T ss_pred             cCcccccHHHHHHHHHcCCCceeEEEEecccccC-----CCCCCeeEEecCCCCceeEEEEEEEECCC-CCEEEEEEEec
Confidence            467999999999988777 588999999876655     78899763  22  579999999987666 66667777775


Q ss_pred             CCCCCcccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858         79 PSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS  114 (131)
Q Consensus        79 ~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~  114 (131)
                      +        ...++.+.+.-... -..++. .+||-
T Consensus       299 ~--------~~~~~~l~~~~~~~-~~~~~~-~lPy~  324 (327)
T PRK09559        299 D--------LEADSVFRVRDDAG-NTLHIQ-PLPYS  324 (327)
T ss_pred             C--------cCCCceEEEccCCC-CeeEec-CCCCC
Confidence            3        23344555532221 236666 68873

>TIGR03317 ygfZ_signature folate-binding protein YgfZ

Probab=97.69  E-value=5.3e-05  Score=47.58  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.3

Q ss_pred             CCCCccHHHHHHhHhcC-CCeEEEEEE
Q psy12858          5 KDYFIGKAALQRQKDQG-VQKRLVMFV   30 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g-~~r~lvgl~   30 (131)
                      |.||||||++++++.+| ++++||+|.
T Consensus        40 Kg~yiGqe~l~r~~~~g~~~~~lv~l~   66 (67)
T TIGR03317        40 KGCYVGQEVVARMHYRGKVKRRLVRLR   66 (67)
T ss_pred             CCCccCHHHHHHHHHcCCCceeEEEee
Confidence            46999999999998888 799999986

YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.

>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]

Probab=97.47  E-value=0.00027  Score=56.79  Aligned_cols=65  Identities=23%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CCCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceeeCCeE--eEEEecceeccccCCeEEEEEecC
Q psy12858          4 VKDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQF--VGTITSAGYGFTMKKLIGLGYIRH   78 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~--VG~vTSg~ySp~l~~~Iala~v~~   78 (131)
                      .|+||+|+|...|.+..| .+|+|+.|.+++. .     |..|+.|..+++.  +|.|+|..-    ...+|++++..
T Consensus       205 ~KGCYvGQE~VAR~~~rG~~kRrl~~l~~d~~-~-----p~~g~~i~a~~~~~~~G~v~s~~~----~~~~~l~~l~~  272 (305)
T COG0354         205 KKGCYVGQETVARAKYRGTNKRRLVLLALDAS-L-----PEAGEEILAGGEEVGLGTVLSAVG----LGPVALIRLKV  272 (305)
T ss_pred             cCcccccHHHhhHHHhcCCCceeEEEEEeCCC-C-----CCCCCeeecCCCcceeeeEEeccc----CcchhHHHHHH
Confidence            678999999999988777 7889999999875 3     7889999999888  889988741    12377888775

>KOG2929|consensus

Probab=96.17  E-value=0.015  Score=47.12  Aligned_cols=99  Identities=20%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             CCCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCC--CcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCC
Q psy12858          4 VKDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDT--DVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHP   79 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~--~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~   79 (131)
                      .|.+|+|+|--.+-...| .++||+.|.++..+-.+  ...+.....|. ..|+.||.+.|+.      ..-|||.+...
T Consensus       238 ~KGCYVGQELTARThhtGViRKRl~P~r~~~~e~~p~~~~~~~~~~~v~~~~g~kvG~~~~~~------g~~glgllr~e  311 (348)
T KOG2929|consen  238 DKGCYVGQELTARTHHTGVIRKRLFPFRLDLAENEPLLVGFTNAPPEVEKKKGRKVGRVISGE------GLRGLGLLRLE  311 (348)
T ss_pred             cCcceechhheehhhhcceeeeeeeeEEecccCCCccccCCCCCccceecccCceeeeeeccC------cceeeeeeehh
Confidence            578999999888777778 68899999994322110  00112333343 5688999999874      35577788762


Q ss_pred             CCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCCC
Q psy12858         80 SEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQV  118 (131)
Q Consensus        80 ~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~  118 (131)
                              .......+..+.|..+.++..  .|+|=|+-
T Consensus       312 --------~~~~~~~~l~~~g~~i~i~~~--~p~W~p~~  340 (348)
T KOG2929|consen  312 --------KFKAQFYKLTTKGENIKIKPQ--KPEWWPDW  340 (348)
T ss_pred             --------hhhccchhhhccCccceeccC--CCcccccc
Confidence                    223444556677877776664  57665543

>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]

Probab=81.90  E-value=10  Score=23.79  Aligned_cols=38  Identities=18%  Similarity=0.030  Sum_probs=32.2

Q ss_pred             cCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCC
Q psy12858         42 LWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHP   79 (131)
Q Consensus        42 ~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~   79 (131)
                      +..|.+|...|-.||.|++-.+++.-++...-..|+++
T Consensus        15 L~~gs~V~~~Gv~VG~V~~i~l~~~~~~v~v~~~i~~~   52 (81)
T PF02470_consen   15 LSVGSPVRYRGVEVGKVTSIELDPDGNRVRVTLRIDPD   52 (81)
T ss_pred             CCCcCEEEECCEEEEEEEEEEEcCCCCEEEEEEEEcCC
Confidence            67789999999999999999987777777777777763

The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1pj5_A	830	Crystal Structure Of Dimethylglycine Oxidase Of Art		1e-06
3gsi_A	827	Crystal Structure Of D552a Dimethylglycine Oxidase		1e-06

>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+ FIGK AL+ + ++   +RL     +D        + G EP++  +Q VG +TSA YG
Sbjct: 725 KESFIGKGALEGRTEEASARRLRCLTIDD----GRSIVLGKEPVFYKEQAVGYVTSAAYG 780
Query: 65  FTMKKLIGLGYI 76
           +T+ K I   Y+
Sbjct: 781 YTVAKPIAYSYL 792

>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+ FIGK AL+ + ++   +RL     +D        + G EP++  +Q VG +TSA YG
Sbjct: 722 KESFIGKGALEGRTEEASARRLRCLTIDD----GRSIVLGKEPVFYKEQAVGYVTSAAYG 777
Query: 65  FTMKKLIGLGYI 76
           +T+ K I   Y+
Sbjct: 778 YTVAKPIAYSYL 789

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	6e-32
3tfi_A	369	GCVT-like aminomethyltransferase protein; demethyl	5e-12
3ttg_A	355	Putative aminomethyltransferase; structural genomi	5e-11
1yx2_A	365	Aminomethyltransferase; glycine cleavage system T	7e-11
1v5v_A	401	Aminomethyltransferase; glycine-cleavage sytem, st	8e-11
1wsr_A	375	Aminomethyltransferase; glycine-cleavage sytem; 2.	1e-10
3gir_A	393	Aminomethyltransferase; glycine cleavage system, a	8e-10
1vlo_A	381	Aminomethyltransferase; NP417381, tetrahydrofolat	3e-09
1wos_A	364	Aminomethyltransferase; T-protein; 1.84A {Thermoto	3e-09

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score =  117 bits (295), Expect = 6e-32
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 12/108 (11%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           K+ FIGK AL+ + ++   +RL     +D        + G EP++  +Q VG +TSA YG
Sbjct: 725 KESFIGKGALEGRTEEASARRLRCLTIDDGRSI----VLGKEPVFYKEQAVGYVTSAAYG 780

Query: 65  FTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPP 112
           +T+ K I   Y+                +  ++  G R  A+    P 
Sbjct: 781 YTVAKPIAYSYLP--------GTVSVGDSVDIEYFGRRITATVTEDPL 820

>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369

 Score = 60.2 bits (147), Expect = 5e-12
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F+GK  L+  K +G QK+L     +  +               N+  +G + SA Y    
Sbjct: 274 FLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKN---IYDENNNVIGELRSACYSPHF 330

Query: 68  KKLIGLGYIRHP 79
           +K+IG+  I+  
Sbjct: 331 QKVIGIAMIKKS 342

>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 5   KDYFIGKAALQRQKDQG-VQKRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITS 60
           K  ++G+  + R K QG + + L  F  E       +  V L+      ++    G +T 
Sbjct: 257 KGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNP----KDGNEAGILTR 312

Query: 61  AGYGFTMKKLIGLGYIR 77
                 +   IGLGYI+
Sbjct: 313 TSSSDILGSGIGLGYIK 329

>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365

 Score = 57.1 bits (139), Expect = 7e-11
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 20/102 (19%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           F GK+ L  QK+ G +++LV     +                 +++N + VG +T+    
Sbjct: 270 FFGKSVLSEQKENGAKRKLVGLEMIEKGIPRHGY--------EVFQNGKSVGKVTTGTQS 321

Query: 65  FTMKKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQA 105
            T+ K +GL          + ++    GT   +++     +A
Sbjct: 322 PTLGKNVGLAL--------IDSETSEIGTVVDVEIRKKLVKA 355

>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           KD FIGK AL +QK++GV ++LV F   D              +Y N + +G +TS    
Sbjct: 295 KD-FIGKDALLKQKERGVGRKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLS 348

Query: 65  FTMKKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQA 105
             +   IG+ +        V  ++   G    +++ G R +A
Sbjct: 349 PLLNVGIGIAF--------VKEEYAKPGIEIEVEIRGQRKKA 382

>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 24/119 (20%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTM 67
           F G   +  Q    VQ+R V  + E            S  +      +GT+TS     ++
Sbjct: 274 FPGAKVIVPQLKGRVQRRRVGLMCEGAPMRA-----HSPILNMEGTKIGTVTSGCPSPSL 328

Query: 68  KKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQASAHIYPPLSNVQVARPYVPQ 125
           KK + +GY        V  ++   GT   ++V   +  A          V    P+VP 
Sbjct: 329 KKNVAMGY--------VPCEYSRPGTMLLVEVRRKQQMA----------VVSKMPFVPT 369

>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393

 Score = 54.1 bits (131), Expect = 8e-10
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 29/122 (23%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAEDLDP---DTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           F G  A      +G  +  V    +   P      ++      I       G +TS G+G
Sbjct: 292 FYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRI-------GVVTSGGFG 344

Query: 65  FTMKKLIGLGYIRHPSEQNVTNDFVTEGT-YTLDVAGNRFQASAHIYPPLSNVQVARPYV 123
            +    + +GY        V   +  EGT    ++ G +                + P+V
Sbjct: 345 PSFDGPVAMGY--------VPVAWKVEGTEVFTELRGKKIAL----------SVHSLPFV 386

Query: 124 PQ 125
            Q
Sbjct: 387 EQ 388

>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 8   FIGKAALQRQKDQGVQKRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITSAGYG 64
           FIG+ AL+ Q++ G  ++LV  V  +   L  +  V    ++     +Q  G ITS  + 
Sbjct: 276 FIGREALEVQREHGT-EKLVGLVMTEKGVLRNELPVRFTDAQ----GNQHEGIITSGTFS 330

Query: 65  FTMKKLIGLGYI 76
            T+   I L  +
Sbjct: 331 PTLGYSIALARV 342

>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 5   KDYFIGKAALQRQKDQGVQKRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITSA 61
           KD F+GK AL + K + V+++LV                       + +N + VG ITS 
Sbjct: 262 KD-FVGKEALLKAK-EKVERKLVALELSGKRIARKGY--------EVLKNGERVGEITSG 311

Query: 62  GYGFTMKKLIGLGYI 76
            +  T+ K I L  +
Sbjct: 312 NFSPTLGKSIALALV 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3gir_A	393	Aminomethyltransferase; glycine cleavage system, a	99.92
3tfi_A	369	GCVT-like aminomethyltransferase protein; demethyl	99.91
1yx2_A	365	Aminomethyltransferase; glycine cleavage system T	99.9
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.9
1v5v_A	401	Aminomethyltransferase; glycine-cleavage sytem, st	99.89
1wos_A	364	Aminomethyltransferase; T-protein; 1.84A {Thermoto	99.88
1vlo_A	381	Aminomethyltransferase; NP417381, tetrahydrofolat	99.88
1wsr_A	375	Aminomethyltransferase; glycine-cleavage sytem; 2.	99.87
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.86
3ttg_A	355	Putative aminomethyltransferase; structural genomi	99.85
1vly_A	338	SPOT PR51, unknown protein from 2D-PAGE; structura	99.75

>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}

Probab=99.92  E-value=5.6e-25  Score=179.19  Aligned_cols=102  Identities=19%  Similarity=0.334  Sum_probs=91.5

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |.||||||+|++++..|++||||+|.+++..+     ++.|++|+ .+|+.||+|||++|||+++++||||||+.+    
T Consensus       289 Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~-----~~~G~~v~~~~g~~vG~VTS~~~sp~l~~~iaLa~v~~~----  359 (393)
T 3gir_A          289 KAQFYGAKAFLESLQKGPSRCRVGLKPQTRQP-----IRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMGYVPVA----  359 (393)
T ss_dssp             HCCSTTHHHHHHHHHHCCSSEEEEEEESSSSC-----CCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGG----
T ss_pred             CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcC-----CCCCCEEEccCCeEEEEEEEEEECCCCCcEEEEEEEcHH----
Confidence            46999999999998889999999999987655     89999999 789999999999999999999999999983    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCccCCCCC
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVA  119 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~  119 (131)
                         ....|+.++|+++|++++|+|+ ++|||++...
T Consensus       360 ---~~~~G~~l~v~i~g~~~~a~v~-~~PF~~~~~~  391 (393)
T 3gir_A          360 ---WKVEGTEVFTELRGKKIALSVH-SLPFVEQRYF  391 (393)
T ss_dssp             ---GCSTTCEEEEEETTEEEEEEEE-CSCSSCCCCC
T ss_pred             ---HcCCCCEEEEEECCEEEEEEEe-cCCCCCCCCC
Confidence               2236889999999999999999 8999988543

>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*

Probab=99.91  E-value=2.6e-24  Score=173.77  Aligned_cols=99  Identities=21%  Similarity=0.338  Sum_probs=87.8

Q ss_pred             CC-CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KD-YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~-dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |. ||||||+|++++.+|++||||+|.++++.+.   .++.|++|+.+|+.||+|||++|||+++++||||||+.+    
T Consensus       270 Kg~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~---~~~~g~~v~~~g~~vG~VTS~~~sp~lg~~iala~v~~~----  342 (369)
T 3tfi_A          270 SDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEIS---LTGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKS----  342 (369)
T ss_dssp             SSCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCC---CCSCEEEECTTCCEEEEEEEEEEETTTTEEEEEEEEEGG----
T ss_pred             CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCC---CcCCCCEEEeCCeEEEEEEeeeECCCCCceEEEEEECHH----
Confidence            44 8999999999998899999999999987541   136789999999999999999999999999999999983    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLS  114 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~  114 (131)
                         ....|+.++|+++|++++|+|+ ++|||
T Consensus       343 ---~~~~G~~l~v~i~g~~~~a~v~-~~Pf~  369 (369)
T 3tfi_A          343 ---HWEASQGFKIQINDNTINGNVC-DLPFI  369 (369)
T ss_dssp             ---GCSTTCEEEEEETTEEEEEEEE-CSSCC
T ss_pred             ---HcCCCCEEEEEECCEEEEEEEE-CCCCC
Confidence               2236899999999999999999 89997

>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}

Probab=99.90  E-value=2.6e-23  Score=167.12  Aligned_cols=99  Identities=21%  Similarity=0.300  Sum_probs=87.2

Q ss_pred             CC-CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KD-YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~-dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |. ||||||++++++..|++||||+|.++++.+     ++.|++|+.+|+.||+|||++|||+++++||||||+.+    
T Consensus       266 Kgc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~vtS~~~sp~~~~~iala~v~~~----  336 (365)
T 1yx2_A          266 KESDFFGKSVLSEQKENGAKRKLVGLEMIEKGI-----PRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSE----  336 (365)
T ss_dssp             CSSCCTTHHHHHHHHHHCCSEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGG----
T ss_pred             CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcC-----CCCCCEEEECCeeEEEEEeccccCCCCceEEEEEEChH----
Confidence            45 599999999998889999999999987655     89999999999999999999999999999999999873    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCccCC
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNV  116 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp  116 (131)
                         ....|+.++|+++|++++|+|+ .+||||+
T Consensus       337 ---~~~~g~~~~v~~~g~~~~a~v~-~~Pf~~~  365 (365)
T 1yx2_A          337 ---TSEIGTVVDVEIRKKLVKAKVV-KTPFYKR  365 (365)
T ss_dssp             ---GCSTTCEEEEEETTEEEEEEEE-CCCC---
T ss_pred             ---HcCCCCEEEEEECCEEEEEEEE-cCCCCCC
Confidence               2246889999999999999999 8999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.90  E-value=1.6e-23  Score=182.22  Aligned_cols=104  Identities=30%  Similarity=0.527  Sum_probs=94.3

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEec-CCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAED-LDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~-~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |.||||||+|++++..|+.||||+|.+++ ..+     +++|++|+.+|+.||+|||++|||+++++||||||+.+    
T Consensus       725 kg~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~-----~~~g~~v~~~g~~vG~vts~~~sp~~~~~iala~v~~~----  795 (830)
T 1pj5_A          725 KESFIGKGALEGRTEEASARRLRCLTIDDGRSI-----VLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGT----  795 (830)
T ss_dssp             SSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCC-----CCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEETT----
T ss_pred             CCCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCC-----CCCCCEEeeCCeEEEEEecceeccccCceEEEEEechh----
Confidence            45999999999998889999999999987 344     78999999999999999999999999999999999973    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY  122 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~  122 (131)
                          +..|+.++|+++|+.++|+|+ .+|||||+++|++
T Consensus       796 ----~~~g~~~~v~~~~~~~~a~v~-~~pf~~~~~~r~~  829 (830)
T 1pj5_A          796 ----VSVGDSVDIEYFGRRITATVT-EDPLYDPKMTRLR  829 (830)
T ss_dssp             ----CCTTCEEEEEETTEEEEEEEE-CSCSSCTTCTTTC
T ss_pred             ----hcCCCEEEEEECCEEEEEEEE-cCCCcCCcccccC
Confidence                223888999999999999999 8999999999886

>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1

Probab=99.89  E-value=1.1e-22  Score=165.65  Aligned_cols=103  Identities=25%  Similarity=0.373  Sum_probs=91.9

Q ss_pred             CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcc
Q psy12858          6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVT   85 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~   85 (131)
                      ++|||||++++++..|..||||+|.++++.+     ++.|++|+.+|+.||+|||++|||+++++||||||+.+      
T Consensus       295 KgyiGqE~lar~~~~G~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~VtS~~~sp~~~~~iala~v~~~------  363 (401)
T 1v5v_A          295 KDFIGKDALLKQKERGVGRKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEE------  363 (401)
T ss_dssp             SCCTTHHHHHHHHHHCCCEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGG------
T ss_pred             CCccCHHHHHHHHhhCCCeEEEEEEECCCCC-----CCCCCEEEECCEEEEEEEeeeEcCCCCceEEEEEEchH------
Confidence            4699999999999889889999999987655     88999999999999999999999999999999999973      


Q ss_pred             cccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCc
Q psy12858         86 NDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARP  121 (131)
Q Consensus        86 ~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~  121 (131)
                       ....|+.++|+++|+.++|+|+ .+|||||...+.
T Consensus       364 -~~~~g~~l~v~~~g~~~~a~v~-~~Pf~~~~~~~~  397 (401)
T 1v5v_A          364 -YAKPGIEIEVEIRGQRKKAVTV-TPPFYDPKKYGL  397 (401)
T ss_dssp             -GCSTTCEEEEEETTEEEEEEEE-CSCSSCTTTSST
T ss_pred             -HcCCCCEEEEEECCEEEEEEEE-ccCCccccccCc
Confidence             1236788999999999999999 899999977643

>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A

Probab=99.88  E-value=5e-22  Score=159.55  Aligned_cols=100  Identities=24%  Similarity=0.318  Sum_probs=89.0

Q ss_pred             CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcc
Q psy12858          6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVT   85 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~   85 (131)
                      ++|||||++++++.. ++||||+|.++++.+     ++.|++|+.+|+.||+|||++|||+++++||||||+.       
T Consensus       262 KgyiGqe~lar~~~~-~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~vtS~~~sp~~g~~iala~v~~-------  328 (364)
T 1wos_A          262 KDFVGKEALLKAKEK-VERKLVALELSGKRI-----ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSK-------  328 (364)
T ss_dssp             SCCTTHHHHHHHHHT-CCEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEET-------
T ss_pred             CCCcCHHHHHHHHhc-cCeEEEEEEECCCcC-----CCCCCEEEECCeEEEEEEeceecCcCCceEEEEEEcc-------
Confidence            369999999999888 999999999987655     8899999999999999999999999999999999997       


Q ss_pred             cccccCcEEEEEECC-eEEEEEEEeCCCccCCCCCC
Q psy12858         86 NDFVTEGTYTLDVAG-NRFQASAHIYPPLSNVQVAR  120 (131)
Q Consensus        86 ~~~~~g~~~~V~i~g-~~~~A~v~~~~Pf~dp~~~r  120 (131)
                       +...|+.++|++++ +.++|+|+ .+|||+|...|
T Consensus       329 -~~~~g~~l~v~~~~~~~~~a~v~-~~Pf~~~~~~~  362 (364)
T 1wos_A          329 -SVKIGDQLGVVFPGGKLVEALVV-KKPFYRGSVRR  362 (364)
T ss_dssp             -TCCTTCEEEEEETTTEEEEEEEE-CSCSCCCSCC-
T ss_pred             -ccCCCCEEEEEeCCCEEEEEEEE-ccCCCCccccc
Confidence             22357889999999 99999999 89999986543

>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*

Probab=99.88  E-value=3.9e-22  Score=161.61  Aligned_cols=94  Identities=22%  Similarity=0.318  Sum_probs=86.8

Q ss_pred             CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeC---Ce-EeEEEecceeccccCCeEEEEEecCCCCC
Q psy12858          7 YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRN---DQ-FVGTITSAGYGFTMKKLIGLGYIRHPSEQ   82 (131)
Q Consensus         7 dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~---g~-~VG~vTSg~ySp~l~~~Iala~v~~~~~~   82 (131)
                      ||||||++++++..|.. |||+|.++++.+     ++.|++|+.+   |+ .||+|||++|||+++++||||||+.    
T Consensus       275 cfiGqE~lar~~~~G~~-rlv~l~~~~~~~-----~~~g~~v~~~~~~g~~~vG~VtS~~~sp~lg~~iala~v~~----  344 (381)
T 1vlo_A          275 DFIGREALEVQREHGTE-KLVGLVMTEKGV-----LRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPE----  344 (381)
T ss_dssp             CCTTHHHHHHHHHHCCC-EEEEEEECSSSC-----CCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECT----
T ss_pred             CCcCHHHHHHHHhcCCC-EEEEEEECCCcC-----CCCCCEEEECCCCCCeeEEEEEEeeeCCCCCceEEEEEEEc----
Confidence            99999999999988988 999999988655     8999999987   88 9999999999999999999999987    


Q ss_pred             CcccccccCcEEEEEECCeEEEEEEEeCCCccCCC
Q psy12858         83 NVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQ  117 (131)
Q Consensus        83 ~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~  117 (131)
                          +  .|+.++|+++|+.++|+|+ .+|||||.
T Consensus       345 ----~--~g~~l~v~~~g~~~~a~v~-~~Pf~~~~  372 (381)
T 1vlo_A          345 ----G--IGETAIVQIRNREMPVKVT-KPVFVRNG  372 (381)
T ss_dssp             ----T--CCSEEEEEETTEEEEEEEE-CSCCEETT
T ss_pred             ----C--CCCEEEEEECCEEEEEEEe-cCCCCCCC
Confidence                3  5788999999999999999 89999985

>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*

Probab=99.87  E-value=8.4e-22  Score=158.89  Aligned_cols=98  Identities=22%  Similarity=0.253  Sum_probs=86.1

Q ss_pred             CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858          5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN   83 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~   83 (131)
                      |.||||||++++++..|++||||+|..+ ..+     ++.|++|+ .+|+.||+|||++|||+++++||||||+.+    
T Consensus       271 Kg~fiGqe~lar~~~~g~~rrlv~l~~~-~~~-----~~~g~~v~~~~g~~vG~vtS~~~sp~lg~~iala~v~~~----  340 (375)
T 1wsr_A          271 AMDFPGAKVIVPQLKGRVQRRRVGLMCE-GAP-----MRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCE----  340 (375)
T ss_dssp             HTCSTTHHHHHHHHTTCCSCEEEEEEES-SSC-----CCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGG----
T ss_pred             CCCCcCHHHHHHHHhcCCCEEEEEEEcC-Ccc-----CCCCCEEEcCCCcEEEEEecceecCcCCceEEEEEEChH----
Confidence            5699999999998888999999999653 333     78999999 589999999999999999999999999873    


Q ss_pred             cccccccCcEEEEEECCeEEEEEEEeCCCccCC
Q psy12858         84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNV  116 (131)
Q Consensus        84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp  116 (131)
                         ....|+.++|+++|+.++|+|+ .+|||+.
T Consensus       341 ---~~~~g~~~~v~~~g~~~~a~v~-~~Pf~~~  369 (375)
T 1wsr_A          341 ---YSRPGTMLLVEVRRKQQMAVVS-KMPFVPT  369 (375)
T ss_dssp             ---GCSTTCEEEEEETTEEEEEEEE-CSCSSCC
T ss_pred             ---HcCCCCEEEEEECCEEEEEEEE-ccCCcCc
Confidence               1236788999999999999999 8999876

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.86  E-value=1.2e-21  Score=173.57  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             CCCccHHHHHHhHhcC-CCeEEEEEEEecC-CCCCCcccCCCCceeeCCe--------EeEEEecceeccccCCeEEEEE
Q psy12858          6 DYFIGKAALQRQKDQG-VQKRLVMFVAEDL-DPDTDVWLWGSEPIYRNDQ--------FVGTITSAGYGFTMKKLIGLGY   75 (131)
Q Consensus         6 ~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~-~~~~~~~~~~g~~V~~~g~--------~VG~vTSg~ySp~l~~~Iala~   75 (131)
                      ++||||++|++++..| .+|+||+|.++++ .+     ++.|++|+.+|+        .||+|||++|||++|++|||||
T Consensus       851 K~fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~-----~~~g~~i~~~g~~~~~~~~~~vG~vtS~~~sp~lg~~iala~  925 (965)
T 2gag_A          851 KDFIGNRSYSRADNAREDRKQLVSVLPVDKSLR-----LPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLAL  925 (965)
T ss_dssp             SCCTTGGGGGSHHHHCSSCEEEEEEEESSTTCC-----CCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEE
T ss_pred             CCcCCHHHHHHHHhcCCCceEEEEEEEeCCCCC-----CCCCCEEEECCccccccCCcceEEEEeeeEcCCCCceEEEEE
Confidence            4899999999988765 6778999999873 34     789999998875        8999999999999999999999


Q ss_pred             ecCCCCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858         76 IRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY  122 (131)
Q Consensus        76 v~~~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~  122 (131)
                      |+.+       ....|+.++|+++++.++|+|+ .+|||||+++|++
T Consensus       926 v~~~-------~~~~g~~~~v~~~~~~~~a~v~-~~pf~~~~~~r~~  964 (965)
T 2gag_A          926 IKNG-------RNRIGEVLKTPVGDQLVDVVVS-ETVLYDPEGSRRD  964 (965)
T ss_dssp             EETG-------GGCTTCEEEEEETTEEEEEEEE-CSCCSSTTCTTTT
T ss_pred             EChh-------hcCCCCEEEEEECCEEEEEEEE-ccCCcCCCCcccC
Confidence            9873       2236788999999999999999 8999999999986

>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}

Probab=99.85  E-value=2e-21  Score=156.12  Aligned_cols=95  Identities=22%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             CCCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceee----CCeEeEEEecceeccccCCeEEEEEecC
Q psy12858          4 VKDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYR----NDQFVGTITSAGYGFTMKKLIGLGYIRH   78 (131)
Q Consensus         4 ~k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~----~g~~VG~vTSg~ySp~l~~~Iala~v~~   78 (131)
                      .|.||||||++++++..| ++||||+|.++++.+     ++.|++|+.    +|+.||+|||++|||+++++||||||+.
T Consensus       256 ~KgcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~-----~~~g~~v~~~~~~~g~~vG~VtS~~~sp~lg~~iaLa~v~~  330 (355)
T 3ttg_A          256 NKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPF-----PKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKR  330 (355)
T ss_dssp             SSCCCTTHHHHHHHHHTSCCCEEEEEEEECC--------CCSCSSEEEECTTTCCEEEEEEEEEEETTTTEEEEEEEEEG
T ss_pred             CCCCccCHHHHHHHHhcCCCceEEEEEEECCCCC-----CCCCCEEEeccCCCCceEEEEEEeeECCCCCCEEEEEEEeh
Confidence            356999999999998888 999999999988655     899999998    8999999999999999999999999998


Q ss_pred             CCCCCcccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858         79 PSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS  114 (131)
Q Consensus        79 ~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~  114 (131)
                      +       ....|+.+++   |+.++|+|+ ++|||
T Consensus       331 ~-------~~~~g~~l~v---g~~~~a~v~-~~Pf~  355 (355)
T 3ttg_A          331 N-------FSENGTELLL---PDAQLVRVH-SLPFV  355 (355)
T ss_dssp             G-------GCSTTCEEEC---TTCCEEEEE-CSCCC
T ss_pred             h-------hcCCCCEEEe---CCeeeEEEe-CCCCC
Confidence            3       1235677765   778999999 89996

>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A

Probab=99.75  E-value=5.3e-18  Score=135.27  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             CCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceee--CC--eEeEEEecceeccccCCeEEEEEecCC
Q psy12858          5 KDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYR--ND--QFVGTITSAGYGFTMKKLIGLGYIRHP   79 (131)
Q Consensus         5 k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~--~g--~~VG~vTSg~ySp~l~~~Iala~v~~~   79 (131)
                      |.||||||++++++..| .+|+++.+..+++.+     ++.|++|+.  ++  +.||+|||++||| ++++||||||+.+
T Consensus       238 KgcyiGqE~lar~~~~G~~rr~l~~l~~~~~~~-----~~~g~~v~~~~~~~g~~vG~VtS~~~~~-~g~~iala~v~~~  311 (338)
T 1vly_A          238 KGCYTGQEMVARAKFRGANKRALWLLAGSASRL-----PEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNND  311 (338)
T ss_dssp             SCCCTTHHHHHHTTSTTSCCEEEEEEEECCSSC-----CCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETT
T ss_pred             CcccCCHHHHHHHHhcCCCceEEEEEecCCCCC-----CCCCCEeEeccCCCCccceEEEEEEECC-CCCEEEEEEEecc
Confidence            45799999999998888 577888887765544     899999982  34  8999999999998 9999999999873


Q ss_pred             CCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCC
Q psy12858         80 SEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQ  117 (131)
Q Consensus        80 ~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~  117 (131)
                              +..|+.++|  +|+.++|+|+ .+||+.|+
T Consensus       312 --------~~~g~~l~v--~g~~~~a~v~-~~Pf~~~~  338 (338)
T 1vly_A          312 --------MEPDSIFRV--RDDANTLHIE-PLPYSLEE  338 (338)
T ss_dssp             --------CCTTCCEES--TTCSSCEEEE-CCSSCCC-
T ss_pred             --------cCCCCeEEE--CCCCceeEEe-CCCCCCCC
Confidence                    345777777  8888999999 89997663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1pj5a1	88	b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,	2e-15
d1wosa1	83	b.44.2.1 (A:279-361) Glycine cleavage system T pro	3e-07
d1v5va1	89	b.44.2.1 (A:313-401) Glycine cleavage system T pro	7e-07
d1vloa1	90	b.44.2.1 (A:278-367) Glycine cleavage system T pro	2e-04
d1pj5a4	315	d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase	0.003

>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Length = 88

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: N,N-dimethylglycine oxidase, C-terminal domain
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 64.5 bits (157), Expect = 2e-15
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           +RL     +D        + G EP++  +Q VG +TSA YG+T+ K I   Y        
Sbjct: 2   RRLRCLTIDDGRSI----VLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSY-------- 49

Query: 84  VTNDFVTEGTYTLDVAGNRFQASAHIYPP 112
           +        +  ++  G R  A+    P 
Sbjct: 50  LPGTVSVGDSVDIEYFGRRITATVTEDPL 78

>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 83

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.9 bits (101), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           ++LV                    + +N + VG ITS  +  T+ K I L  +    +  
Sbjct: 1   RKLVALELSGKRI-----ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSKSVKIG 55

Query: 84  VTNDFVTEGTYTLDVAGNRFQA 105
                V          G   +A
Sbjct: 56  DQLGVV-------FPGGKLVEA 70

>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 89

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.1 bits (99), Expect = 7e-07
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           ++LV F   D              +Y N + +G +TS      +   IG+ +++      
Sbjct: 1   RKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVK------ 49

Query: 84  VTNDFVTEGT-YTLDVAGNRFQA 105
              ++   G    +++ G R +A
Sbjct: 50  --EEYAKPGIEIEVEIRGQRKKA 70

>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 90

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 17/85 (20%)

Query: 24  KRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPS 80
           ++LV  V  +   L  +  V         + +Q  G ITS  +  T+   I L  +    
Sbjct: 2   EKLVGLVMTEKGVLRNELPVRF----TDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI 57

Query: 81  EQNVTNDFVTEGTYTLDVAGNRFQA 105
            +             + +       
Sbjct: 58  GETA----------IVQIRNREMPV 72

>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 5   KDYFIGKAALQRQKDQG 21
           K+ FIGK AL+ + ++ 
Sbjct: 298 KESFIGKGALEGRTEEA 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1pj5a1	88	N,N-dimethylglycine oxidase, C-terminal domain {Ar	99.96
d1v5va1	89	Glycine cleavage system T protein, GcvT {Pyrococcu	99.95
d1wosa1	83	Glycine cleavage system T protein, GcvT {Thermotog	99.92
d1vloa1	90	Glycine cleavage system T protein, GcvT {Escherich	99.91
d1vlya1	82	Hypothetical protein YgfZ, C-terminal domain {Esch	87.77

>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: N,N-dimethylglycine oxidase, C-terminal domain
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.96  E-value=3.4e-29  Score=164.31  Aligned_cols=87  Identities=28%  Similarity=0.478  Sum_probs=79.3

Q ss_pred             CeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcccccccCcEEEEEECCeE
Q psy12858         23 QKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNR  102 (131)
Q Consensus        23 ~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~~~~~~g~~~~V~i~g~~  102 (131)
                      .||||+|.+++...    .++++++|+.||+.||+|||++|||+++++||||||+.        ++..|++++|+++|++
T Consensus         1 srrLv~l~~d~~~~----~~~g~epI~~~g~~VG~vTS~~~Sp~l~k~Iala~v~~--------~~~~g~~~~V~~~g~~   68 (88)
T d1pj5a1           1 ARRLRCLTIDDGRS----IVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPG--------TVSVGDSVDIEYFGRR   68 (88)
T ss_dssp             SEEEEEEEETTSCC----CCCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEET--------TCCTTCEEEEEETTEE
T ss_pred             CCcEEEEEEECCCc----CcCCCCeEEECCEEEEEEECCeECchhccceEEEEEec--------CcCCCCEEEEEECCEE
Confidence            47999999998655    27889999999999999999999999999999999986        3457899999999999


Q ss_pred             EEEEEEeCCCccCCCCCCcC
Q psy12858        103 FQASAHIYPPLSNVQVARPY  122 (131)
Q Consensus       103 ~~A~v~~~~Pf~dp~~~r~~  122 (131)
                      ++|+|+ ..|||||+++|++
T Consensus        69 ~~a~v~-~~P~yDP~~~r~r   87 (88)
T d1pj5a1          69 ITATVT-EDPLYDPKMTRLR   87 (88)
T ss_dssp             EEEEEE-CSCSSCTTCTTTC
T ss_pred             EEEEEE-ccCCCCCCCcccC
Confidence            999999 8999999999985

>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3.7e-28  Score=159.63  Aligned_cols=88  Identities=18%  Similarity=0.277  Sum_probs=80.2

Q ss_pred             eEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcccccccCcEEEEEECCeEE
Q psy12858         24 KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDVAGNRF  103 (131)
Q Consensus        24 r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~~~~~~g~~~~V~i~g~~~  103 (131)
                      ||||||+++++.+     |++|++|+.||+.||+|||++|||+++++||||||+.+       ....|+.++|+++|+.+
T Consensus         1 rkLvGl~~~~~~i-----~~~g~~I~~~g~~VG~vTSg~~Sp~l~~~Iala~v~~~-------~~~~g~~v~v~i~g~~~   68 (89)
T d1v5va1           1 RKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEE-------YAKPGIEIEVEIRGQRK   68 (89)
T ss_dssp             EEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGG-------GCSTTCEEEEEETTEEE
T ss_pred             CeEEEEEECCCcc-----CCCCCEEEECCEEEEEEecCcCCCcCCceEEEEEECHH-------HcCCCCEEEEEECCeEE
Confidence            6899999998777     89999999999999999999999999999999999973       22468899999999999


Q ss_pred             EEEEEeCCCccCCCCCCcCCC
Q psy12858        104 QASAHIYPPLSNVQVARPYVP  124 (131)
Q Consensus       104 ~A~v~~~~Pf~dp~~~r~~~~  124 (131)
                      +|+|+ ..|||||+.-|+...
T Consensus        69 ~a~v~-~~PfyDp~~~~~~~~   88 (89)
T d1v5va1          69 KAVTV-TPPFYDPKKYGLFRE   88 (89)
T ss_dssp             EEEEE-CSCSSCTTTSSTTCC
T ss_pred             EEEEE-CCCCcCCcccEEeec
Confidence            99999 899999999888764

>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=5.1e-25  Score=142.34  Aligned_cols=80  Identities=19%  Similarity=0.175  Sum_probs=70.4

Q ss_pred             eEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcccccccC-cEEEEEECCeE
Q psy12858         24 KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTE-GTYTLDVAGNR  102 (131)
Q Consensus        24 r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~~~~~~g-~~~~V~i~g~~  102 (131)
                      ||||||+++++.+     +++|++|+.||+.||+|||++|||+|+++||||||+.+        +..+ +.+.++++|++
T Consensus         1 RrlvGl~i~~~~~-----~~~g~~I~~~g~~VG~vTSg~~Sp~l~k~Iala~i~~~--------~~~~~~~~~~~~~g~~   67 (83)
T d1wosa1           1 RKLVALELSGKRI-----ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSKS--------VKIGDQLGVVFPGGKL   67 (83)
T ss_dssp             EEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEETT--------CCTTCEEEEEETTTEE
T ss_pred             CeEEEEEECCCcC-----CCCCCEEEECCEEEEEEeCccCCCCCCceEEEEEEChh--------hcCCCeEEEEEECCeE
Confidence            6899999998776     89999999999999999999999999999999999973        3344 45566788999


Q ss_pred             EEEEEEeCCCccCCC
Q psy12858        103 FQASAHIYPPLSNVQ  117 (131)
Q Consensus       103 ~~A~v~~~~Pf~dp~  117 (131)
                      ++|+|+ ++|||++.
T Consensus        68 ~~a~v~-~~PF~~~~   81 (83)
T d1wosa1          68 VEALVV-KKPFYRGS   81 (83)
T ss_dssp             EEEEEE-CSCSCCCS
T ss_pred             EEEEEE-CCCCcCCC
Confidence            999999 89999764

>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Glycine cleavage system T protein, GcvT
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.7e-24  Score=142.12  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             CeEEEEEEEecCCCCCCcccCCCCcee----eCCeEeEEEecceeccccCCeEEEEEecCCCCCCcccccccCcEEEEEE
Q psy12858         23 QKRLVMFVAEDLDPDTDVWLWGSEPIY----RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDV   98 (131)
Q Consensus        23 ~r~lvgl~~~~~~~~~~~~~~~g~~V~----~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~~~~~~g~~~~V~i   98 (131)
                      .+|||||.++++.+     +++|++|+    .+|+.||+|||++|||+++++||||||+.+          .++.++|++
T Consensus         1 t~kLVGl~l~~~~~-----~~~g~~v~~~~~~~~~~iG~VTSg~~Sp~l~k~Iala~v~~~----------~g~~~~v~v   65 (90)
T d1vloa1           1 TEKLVGLVMTEKGV-----LRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEG----------IGETAIVQI   65 (90)
T ss_dssp             CCEEEEEEECSSSC-----CCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTT----------CCSEEEEEE
T ss_pred             CCcEEEEEECCCCC-----CCCCCEEEecccCCCeEEEEEEcccCCCccCceEEEEEEecC----------CCCEEEEEE
Confidence            36899999998876     89999998    367999999999999999999999999862          378899999


Q ss_pred             CCeEEEEEEEeCCCccCCCCCCc
Q psy12858         99 AGNRFQASAHIYPPLSNVQVARP  121 (131)
Q Consensus        99 ~g~~~~A~v~~~~Pf~dp~~~r~  121 (131)
                      ++++++|+|+ ++||||+ ++++
T Consensus        66 ~g~~~~a~v~-~~PF~~~-~k~~   86 (90)
T d1vloa1          66 RNREMPVKVT-KPVFVRN-GKAV   86 (90)
T ss_dssp             TTEEEEEEEE-CSCCEET-TEEC
T ss_pred             CCEEEEEEEE-CCCcccC-CCcc
Confidence            9999999999 8999984 5443

>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: Aminomethyltransferase beta-barrel domain
family: Aminomethyltransferase beta-barrel domain
domain: Hypothetical protein YgfZ, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.87  Score=27.09  Aligned_cols=74  Identities=8%  Similarity=-0.022  Sum_probs=46.0

Q ss_pred             CeEEEEEEEecCCCCCCcccCCCCceee--C--CeEeEEEecceeccccCCeEEEEEecCCCCCCcccccccCcEEEEEE
Q psy12858         23 QKRLVMFVAEDLDPDTDVWLWGSEPIYR--N--DQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVTNDFVTEGTYTLDV   98 (131)
Q Consensus        23 ~r~lvgl~~~~~~~~~~~~~~~g~~V~~--~--g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~~~~~~g~~~~V~i   98 (131)
                      +|++.-|.......     |..|+.|+.  +  .+.+|.|-+++..+ -|+..++|-++.+        ...++.+.+.-
T Consensus         2 KRamy~l~g~~~~~-----p~~G~~le~~~~~~wr~~G~Vv~a~~~~-dg~~~~laVL~~d--------~~~~~~~r~~~   67 (82)
T d1vlya1           2 KRALWLLAGSASRL-----PEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNND--------MEPDSIFRVRD   67 (82)
T ss_dssp             CEEEEEEEECCSSC-----CCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETT--------CCTTCCEESTT
T ss_pred             ccEEEEEEecccCC-----CCCCCEeEeecCCCCccccEEEEEEECC-CCcEEEEEEeCCC--------cccCccEEecC
Confidence            45666666555443     888998973  2  26899999976433 5678899999874        22344444321


Q ss_pred             CCeEEEEEEEeCCCc
Q psy12858         99 AGNRFQASAHIYPPL  113 (131)
Q Consensus        99 ~g~~~~A~v~~~~Pf  113 (131)
                      .+  -.-++. ..||
T Consensus        68 ~~--~~L~~~-~LPY   79 (82)
T d1vlya1          68 DA--NTLHIE-PLPY   79 (82)
T ss_dssp             CS--SCEEEE-CCSS
T ss_pred             CC--CEeEEc-CCCC
Confidence            22  234566 6776