Psyllid ID: psy13072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MAAGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHcHHHHccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcHccccccccccccccccccccHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maagkssgKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQvhpdtgvsSKAMSIMNSFVNDIFERIAAESSRLahynkrstiTSREIQTAVRLLLPGELAKHAVSEGTKAVTKytssksnpLQFIMAAGKSSGKAVKKAGKAQKNIaksdkkkkhrrkESYAIYIYKVLKQvhpdtgvsSKAMSIMNSFVNDIFERIAAESSRLahynkrstiTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Flexible Loop (DISEMBL)
maagkssgkavkkagkaqkniaksdkkkkkkhrrkesyAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLahynkrstitsreIQTAVRLLLPGELAKHAVSEGTKAVtkytssksnpLQFIMAAGKSSGKAVKKagkaqkniaksdkkkkhrrkeSYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLahynkrstitsreIQTAVRLLLPGelakhavsegtkavtkytssk
Low Complexity Region (SEG)
MaagkssgkavkkagkaqkniaksdkkkkkkhrrkESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMaagkssgkavkkagkaQKNIAksdkkkkhrrkESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Disordered region (IsUnstruct)
*************************************YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHA*********************************************************YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA******************
Disordered Region (DISOPRED)
****************************************YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQF***************************************YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY****
Disordered Region (DISEMBL)
**********************************KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAA*****************************KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHA***************
Disordered Region (DISPRO)
***********************************ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT*******************************************ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
P35069	123	Histone H2B.3 OS=Tigriopu	N/A	N/A	0.408	0.853	0.925	3e-52
P35068	123	Histone H2B.1/H2B.2 OS=Ti	N/A	N/A	0.408	0.853	0.925	4e-52
P83863	116	Histone H2B (Fragments) O	N/A	N/A	0.404	0.896	0.915	5e-50
Q27442	124	Histone H2B OS=Anopheles	yes	N/A	0.478	0.991	0.879	7e-50
Q8CGP2	126	Histone H2B type 1-P OS=M	yes	N/A	0.478	0.976	0.775	7e-50
P0C1H5	126	Histone H2B 7 OS=Gallus g	yes	N/A	0.478	0.976	0.790	8e-50
Q8I1N0	123	Histone H2B OS=Drosophila	N/A	N/A	0.459	0.959	0.941	1e-49
Q76FD7	123	Histone H2B OS=Drosophila	N/A	N/A	0.459	0.959	0.933	1e-49
P17271	123	Histone H2B OS=Drosophila	N/A	N/A	0.459	0.959	0.933	1e-49
Q6PC60	126	Histone H2B 3 OS=Danio re	yes	N/A	0.478	0.976	0.782	2e-49

>sp|P35069|H2B3_TIGCA Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/107 (92%), Positives = 104/107 (97%)

Query: 151 QKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
           QKNI+K DKKK  +RKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA+E+S
Sbjct: 17  QKNISKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEAS 76

Query: 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 77  RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Tigriopus californicus (taxid: 6832)

>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/107 (92%), Positives = 103/107 (96%)

Query: 151 QKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
           QKNI K DKKK  +RKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA+E+S
Sbjct: 17  QKNITKGDKKKNRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEAS 76

Query: 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 77  RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Tigriopus californicus (taxid: 6832)

>sp|P83863|H2B_LITVA Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/107 (91%), Positives = 102/107 (95%), Gaps = 3/107 (2%)

Query: 151 QKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
           QK+I K DKKK   RKESY+IYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 13  QKSITKGDKKK---RKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 69

Query: 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 70  RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 116

A mixture of histones H2B and H4 has antimicrobial activity against the Gram-positive bacterium M.luteus.

Litopenaeus vannamei (taxid: 6689)

>sp|Q27442|H2B_ANOGA Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5

 Score =  197 bits (501), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 109/124 (87%), Positives = 114/124 (91%), Gaps = 1/124 (0%)

Query: 3   AGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSI 62
           A K+SGKA KK+GKAQKN      KKKK+  RKESYAIYIYKVLKQVHPDTG+SSKAMSI
Sbjct: 2   APKTSGKAAKKSGKAQKN-ISKSDKKKKRKTRKESYAIYIYKVLKQVHPDTGISSKAMSI 60

Query: 63  MNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 122
           MNSFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY
Sbjct: 61  MNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKY 120

Query: 123 TSSK 126
           TSSK
Sbjct: 121 TSSK 124

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Anopheles gambiae (taxid: 7165)

>sp|Q8CGP2|H2B1P_MOUSE Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3

 Score =  197 bits (500), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 110/129 (85%), Gaps = 6/129 (4%)

Query: 129 PLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSS 188
           P++ + A  K S KAV KA K      K  KK+K  RKESY++Y+YKVLKQVHPDTG+SS
Sbjct: 4   PVKSVPAPKKGSKKAVTKAQK------KDGKKRKRSRKESYSVYVYKVLKQVHPDTGISS 57

Query: 189 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 248
           KAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK
Sbjct: 58  KAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 117

Query: 249 AVTKYTSSK 257
           AVTKYTSSK
Sbjct: 118 AVTKYTSSK 126

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Mus musculus (taxid: 10090)

>sp|P0C1H5|H2B7_CHICK Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2

 Score =  197 bits (500), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 102/129 (79%), Positives = 108/129 (83%), Gaps = 6/129 (4%)

Query: 129 PLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSS 188
           P +   A  K S KAV K  K      K DKK+K  RKESY+IY+YKVLKQVHPDTG+SS
Sbjct: 4   PAKSAPAPKKGSKKAVTKTQK------KGDKKRKRARKESYSIYVYKVLKQVHPDTGISS 57

Query: 189 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 248
           KAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK
Sbjct: 58  KAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 117

Query: 249 AVTKYTSSK 257
           AVTKYTSSK
Sbjct: 118 AVTKYTSSK 126

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Gallus gallus (taxid: 9031)

>sp|Q8I1N0|H2B_DROYA Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 117/120 (97%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKA KKAGKAQKNI K+DKKKK RRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KTSGKAAKKAGKAQKNITKTDKKKKRRRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila yakuba (taxid: 7245)

>sp|Q76FD7|H2B_DROSE Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKA KKAGKAQKNI K+DKKKK +RKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KTSGKAAKKAGKAQKNITKNDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila sechellia (taxid: 7238)

>sp|P17271|H2B_DROHY Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 117/120 (97%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKA KKAGKAQKNI K+DKKKK +RKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KTSGKAAKKAGKAQKNITKNDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila hydei (taxid: 7224)

>sp|Q6PC60|H2B3_DANRE Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 107/129 (82%), Gaps = 6/129 (4%)

Query: 129 PLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSS 188
           P +   A  K S KAV K  K      K DKK++  RKESYAIY+YKVLKQVHPDTG+SS
Sbjct: 4   PAKSAPAPKKGSKKAVTKTQK------KGDKKRRKTRKESYAIYVYKVLKQVHPDTGISS 57

Query: 189 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 248
           KAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK
Sbjct: 58  KAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 117

Query: 249 AVTKYTSSK 257
           AVTKYTSSK
Sbjct: 118 AVTKYTSSK 126

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
357473279	290	Histone H2B [Medicago truncatula] gi|355	0.856	0.758	0.686	6e-81
449443373	278	PREDICTED: histone H2B-like [Cucumis sat	0.937	0.866	0.677	4e-79
225710358	125	Histone H2B [Caligus rogercresseyi]	0.466	0.96	0.942	2e-57
328699742	126	PREDICTED: histone H2B.3-like [Acyrthosi	0.474	0.968	0.926	4e-57
193582492	126	PREDICTED: histone H2B.3-like [Acyrthosi	0.482	0.984	0.904	9e-57
193591751	126	PREDICTED: histone H2B.1/H2B.2-like [Acy	0.474	0.968	0.894	6e-55
225717540	124	Histone H2B [Caligus clemensi]	0.466	0.967	0.925	2e-54
328791747	123	PREDICTED: histone H2B.3-like [Apis mell	0.459	0.959	0.95	3e-54
340708714	130	PREDICTED: histone H2B.3-like [Bombus te	0.459	0.907	0.95	3e-54
383856463	123	PREDICTED: histone H2B.3-like [Megachile	0.459	0.959	0.941	5e-54

>gi|357473279|ref|XP_003606924.1| Histone H2B [Medicago truncatula] gi|355507979|gb|AES89121.1| Histone H2B [Medicago truncatula]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 160/233 (68%), Positives = 182/233 (78%), Gaps = 13/233 (5%)

Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A ESSRLA YNK+ TITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 118

Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVK----KAGKAQ 151
           QTAVRL+LPGELAKHAVSEGTKAVTK+T  K  P +   A  K S  A K    K  KA 
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTREK-KPAEKKPAEEKKSTVAEKAPAEKKPKAG 177

Query: 152 KNIAKSD--------KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFE 203
           K + K          KK+  +  E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE
Sbjct: 178 KKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFE 237

Query: 204 RIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
           ++  ESSRLA YNK+ TITSREIQTAVRL+LPGELAKH VSEGTKAVTK+TSS
Sbjct: 238 KLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443373|ref|XP_004139452.1| PREDICTED: histone H2B-like [Cucumis sativus]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/248 (67%), Positives = 200/248 (80%), Gaps = 7/248 (2%)

Query: 16  KAQKNIAK--SDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFER 73
           +A+K + K  SDKKKK+  +  E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE+
Sbjct: 31  RAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 90

Query: 74  IAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT-SSKSNPLQF 132
           +A ESS+LA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+T   K    + 
Sbjct: 91  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTRKKKPAEKKP 150

Query: 133 IMAAGKSSGKAVKKAGKAQKNIAK--SDKKKKHRRK--ESYAIYIYKVLKQVHPDTGVSS 188
                K+     +K  +A+K + K  SDKKKK  +K  E+Y IYI+KVLKQVHPD G+SS
Sbjct: 151 AAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISS 210

Query: 189 KAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTK 248
           KAM IMNSF+NDIFE++A ESS+LA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTK
Sbjct: 211 KAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTK 270

Query: 249 AVTKYTSS 256
           AVTK+TSS
Sbjct: 271 AVTKFTSS 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225710358|gb|ACO11025.1| Histone H2B [Caligus rogercresseyi]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/122 (94%), Positives = 116/122 (95%)

Query: 5   KSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMN 64
           KS GKAVKKAGKAQKNI KSD  KKK H+RKESYAIYIYKVLKQVHPDTGVSSKAMSIMN
Sbjct: 4   KSVGKAVKKAGKAQKNITKSDGVKKKSHKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMN 63

Query: 65  SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
           S VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Sbjct: 64  SLVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 123

Query: 125 SK 126
           SK
Sbjct: 124 SK 125

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699742|ref|XP_003241030.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328699758|ref|XP_003241035.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328713529|ref|XP_003245104.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|328726557|ref|XP_003248948.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum]

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 120/123 (97%), Gaps = 1/123 (0%)

Query: 136 AGKSSGKAVKKA-GKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIM 194
            GKS+GKA+KK+ GKAQKNIAKSDKK+K +RKESYAIYIYKVLKQVHPDTGVSSKAMSIM
Sbjct: 4   GGKSAGKAMKKSSGKAQKNIAKSDKKRKPKRKESYAIYIYKVLKQVHPDTGVSSKAMSIM 63

Query: 195 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 254
           NSFVND+FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT
Sbjct: 64  NSFVNDLFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 123

Query: 255 SSK 257
           SSK
Sbjct: 124 SSK 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193582492|ref|XP_001947771.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum] gi|193603782|ref|XP_001950698.1| PREDICTED: histone H2B.3-like [Acyrthosiphon pisum]

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 114/126 (90%), Positives = 120/126 (95%), Gaps = 2/126 (1%)

Query: 134 MAAGKSS--GKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAM 191
           MA G  S  GKA+KK+GKAQKNIAKSDKK+K +RKESYAIYIYKVLKQVHPDTGVSSKAM
Sbjct: 1   MAPGGKSAGGKAMKKSGKAQKNIAKSDKKRKPKRKESYAIYIYKVLKQVHPDTGVSSKAM 60

Query: 192 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 251
           SIMNSFVND+FERIA+ESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  SIMNSFVNDLFERIASESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 252 KYTSSK 257
           KYTSSK
Sbjct: 121 KYTSSK 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193591751|ref|XP_001950269.1| PREDICTED: histone H2B.1/H2B.2-like [Acyrthosiphon pisum]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 110/123 (89%), Positives = 117/123 (95%), Gaps = 1/123 (0%)

Query: 136 AGKSSGKAVKKA-GKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIM 194
            GKS+GKA+KK+ GKAQKNI K+ KK+K +RKESY IYIYKVLKQVHPDTGVSSKAMSIM
Sbjct: 4   GGKSTGKAMKKSSGKAQKNIVKAGKKRKPKRKESYGIYIYKVLKQVHPDTGVSSKAMSIM 63

Query: 195 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 254
           NSFVND+FERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT
Sbjct: 64  NSFVNDLFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT 123

Query: 255 SSK 257
           SSK
Sbjct: 124 SSK 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225717540|gb|ACO14616.1| Histone H2B [Caligus clemensi]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/121 (92%), Positives = 113/121 (93%), Gaps = 1/121 (0%)

Query: 138 KSSGKAVKKAGKAQKNIAKSD-KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNS 196
           KS GKA KKAGK QK I KSD KKK H+RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNS
Sbjct: 4   KSVGKAAKKAGKTQKKITKSDGKKKSHKRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNS 63

Query: 197 FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
           FVNDIFERIAAESSR AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 64  FVNDIFERIAAESSRPAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123

Query: 257 K 257
           K
Sbjct: 124 K 124

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791747|ref|XP_003251626.1| PREDICTED: histone H2B.3-like [Apis mellifera] gi|380028615|ref|XP_003697990.1| PREDICTED: histone H2B.3-like [Apis florea]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 119/120 (99%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKAVKKAGKAQKNI+KSDKKKK RRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KASGKAVKKAGKAQKNISKSDKKKKRRRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708714|ref|XP_003392967.1| PREDICTED: histone H2B.3-like [Bombus terrestris]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 119/120 (99%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKAVKKAGKAQKNI+KSDKKKK RRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KASGKAVKKAGKAQKNISKSDKKKKRRRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856463|ref|XP_003703728.1| PREDICTED: histone H2B.3-like [Megachile rotundata]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 119/120 (99%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKAVKKAGKAQKNI+K+DKKKK RRKESYAIYIYKVLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KASGKAVKKAGKAQKNISKTDKKKKRRRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VND+FERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDVFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
FB|FBgn0061209	123	His2B:CG17949 "His2B:CG17949"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053868	123	His2B:CG33868 "His2B:CG33868"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053870	123	His2B:CG33870 "His2B:CG33870"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053872	123	His2B:CG33872 "His2B:CG33872"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053874	123	His2B:CG33874 "His2B:CG33874"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053876	123	His2B:CG33876 "His2B:CG33876"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053878	123	His2B:CG33878 "His2B:CG33878"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053880	123	His2B:CG33880 "His2B:CG33880"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053882	123	His2B:CG33882 "His2B:CG33882"	0.416	0.869	0.869	7.3e-43
FB|FBgn0053884	123	His2B:CG33884 "His2B:CG33884"	0.416	0.869	0.869	7.3e-43

FB|FBgn0061209 His2B:CG17949 "His2B:CG17949" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0053868 His2B:CG33868 "His2B:CG33868" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053870 His2B:CG33870 "His2B:CG33870" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053872 His2B:CG33872 "His2B:CG33872" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053874 His2B:CG33874 "His2B:CG33874" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053876 His2B:CG33876 "His2B:CG33876" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053878 His2B:CG33878 "His2B:CG33878" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053880 His2B:CG33880 "His2B:CG33880" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053882 His2B:CG33882 "His2B:CG33882" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053884 His2B:CG33884 "His2B:CG33884" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 93/107 (86%), Positives = 95/107 (88%)

Query:   151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
             QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct:    17 QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76

Query:   211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
             RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:    77 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P58876	H2B1D_HUMAN	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q64478	H2B1H_MOUSE	No assigned EC number	0.7674	0.4785	0.9761	yes	N/A
Q76FE9	H2B_DROOR	No assigned EC number	0.9333	0.4669	0.9756	N/A	N/A
Q8I1N0	H2B_DROYA	No assigned EC number	0.9416	0.4591	0.9593	N/A	N/A
P33778	H2B1B_HUMAN	No assigned EC number	0.7744	0.4747	0.9682	yes	N/A
Q9PSW9	H2B8_CHICK	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q27442	H2B_ANOGA	No assigned EC number	0.8790	0.4785	0.9919	yes	N/A
P35069	H2B3_TIGCA	No assigned EC number	0.9252	0.4085	0.8536	N/A	N/A
Q76FF3	H2B_DROTE	No assigned EC number	0.9333	0.4669	0.9756	N/A	N/A
P62807	H2B1C_HUMAN	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q6ZWY9	H2B1C_MOUSE	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q64525	H2B2B_MOUSE	No assigned EC number	0.7615	0.4824	0.9841	yes	N/A
P02283	H2B_DROME	No assigned EC number	0.9333	0.4669	0.9756	yes	N/A
Q8CGP2	H2B1P_MOUSE	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q8CGP1	H2B1K_MOUSE	No assigned EC number	0.7674	0.4785	0.9761	yes	N/A
P10854	H2B1M_MOUSE	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q6PC60	H2B3_DANRE	No assigned EC number	0.7829	0.4785	0.9761	yes	N/A
P10853	H2B1F_MOUSE	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q16778	H2B2E_HUMAN	No assigned EC number	0.7829	0.4785	0.9761	yes	N/A
P17271	H2B_DROHY	No assigned EC number	0.9333	0.4591	0.9593	N/A	N/A
Q99877	H2B1N_HUMAN	No assigned EC number	0.7744	0.4747	0.9682	yes	N/A
Q76FD7	H2B_DROSE	No assigned EC number	0.9333	0.4591	0.9593	N/A	N/A
P59782	H2B_DROSI	No assigned EC number	0.9333	0.4669	0.9756	N/A	N/A
Q99879	H2B1M_HUMAN	No assigned EC number	0.7596	0.4785	0.9761	yes	N/A
P0C1H4	H2B5_CHICK	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
P0C1H5	H2B7_CHICK	No assigned EC number	0.7906	0.4785	0.9761	yes	N/A
P23527	H2B1O_HUMAN	No assigned EC number	0.7769	0.4824	0.9841	yes	N/A
P62808	H2B1_BOVIN	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
P06899	H2B1J_HUMAN	No assigned EC number	0.7751	0.4785	0.9761	yes	N/A
Q64475	H2B1B_MOUSE	No assigned EC number	0.7669	0.4747	0.9682	yes	N/A
P35068	H2B1_TIGCA	No assigned EC number	0.9252	0.4085	0.8536	N/A	N/A
P83863	H2B_LITVA	No assigned EC number	0.9158	0.4046	0.8965	N/A	N/A
Q99880	H2B1L_HUMAN	No assigned EC number	0.8048	0.4552	0.9285	yes	N/A
O60814	H2B1K_HUMAN	No assigned EC number	0.7674	0.4785	0.9761	yes	N/A
Q93079	H2B1H_HUMAN	No assigned EC number	0.7692	0.4824	0.9841	yes	N/A
Q5QNW6	H2B2F_HUMAN	No assigned EC number	0.7615	0.4824	0.9841	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	257
smart00427	97	smart00427, H2B, Histone H2B	2e-48
smart00427	97	smart00427, H2B, Histone H2B	2e-48
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	9e-41
PLN00158	116	PLN00158, PLN00158, histone H2B; Provisional	1e-40
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	3e-36
PTZ00463	117	PTZ00463, PTZ00463, histone H2B; Provisional	7e-34
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	3e-21
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	3e-21

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score =  154 bits (392), Expect = 2e-48
 Identities = 81/97 (83%), Positives = 93/97 (95%)

Query: 28  KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 87
           KK+  +RKE+YAIYIYKVLKQVHPDTG+SS+AMSIMNSFVNDIFERIAAE+S+LA YNK+
Sbjct: 1   KKRVKKRKETYAIYIYKVLKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASKLARYNKK 60

Query: 88  STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
           ST++SREIQTAVRL+LPGELAKHAVSEGTKAVTK +S
Sbjct: 61  STLSSREIQTAVRLILPGELAKHAVSEGTKAVTKASS 97

Length = 97

>gnl|CDD|197718 smart00427, H2B, Histone H2B

 Score =  154 bits (392), Expect = 2e-48
 Identities = 81/97 (83%), Positives = 93/97 (95%)

Query: 159 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218
           KK+  +RKE+YAIYIYKVLKQVHPDTG+SS+AMSIMNSFVNDIFERIAAE+S+LA YNK+
Sbjct: 1   KKRVKKRKETYAIYIYKVLKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASKLARYNKK 60

Query: 219 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 255
           ST++SREIQTAVRL+LPGELAKHAVSEGTKAVTK +S
Sbjct: 61  STLSSREIQTAVRLILPGELAKHAVSEGTKAVTKASS 97

Length = 97

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score =  135 bits (342), Expect = 9e-41
 Identities = 82/112 (73%), Positives = 95/112 (84%), Gaps = 1/112 (0%)

Query: 14  AGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFER 73
           + K  K  AK  KKK  K  + E+Y IYIYKVLKQVHPDTG+SSKAMSIMNSF+NDIFE+
Sbjct: 6   SKKPAKKAAKGAKKKGSK-SKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEK 64

Query: 74  IAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
           IA E+ +LA YNK+ T+TSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct: 65  IATEAGKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA 116

Length = 116

>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional

 Score =  135 bits (342), Expect = 1e-40
 Identities = 78/107 (72%), Positives = 92/107 (85%)

Query: 150 AQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAES 209
           A+K    + KK    + E+Y IYIYKVLKQVHPDTG+SSKAMSIMNSF+NDIFE+IA E+
Sbjct: 10  AKKAAKGAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEA 69

Query: 210 SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
            +LA YNK+ T+TSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct: 70  GKLARYNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA 116

Length = 116

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score =  124 bits (312), Expect = 3e-36
 Identities = 76/113 (67%), Positives = 93/113 (82%)

Query: 12  KKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIF 71
           KK  KA+K     D KKK+K  R +SY +YI+KVLKQVHPDTG+S K+M+IMNSF+ D F
Sbjct: 4   KKPAKAKKAATGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTF 63

Query: 72  ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
           E+IA E+SRL  Y +R T++SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TS
Sbjct: 64  EKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS 116

Length = 117

>gnl|CDD|185642 PTZ00463, PTZ00463, histone H2B; Provisional

 Score =  118 bits (296), Expect = 7e-34
 Identities = 75/113 (66%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 145 KKAGKAQKNIAKSD--KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIF 202
           KK  KA+K     D  KK+K  R +SY +YI+KVLKQVHPDTG+S K+M+IMNSF+ D F
Sbjct: 4   KKPAKAKKAATGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTF 63

Query: 203 ERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 255
           E+IA E+SRL  Y +R T++SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TS
Sbjct: 64  EKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS 116

Length = 117

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 84.1 bits (209), Expect = 3e-21
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 32  HRRKESYAIYIYKVLKQVHPD----TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 87
             R     +   +V++++         +SSKA   +   + D+ E I  ++  LA + KR
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 88  STITSREIQTAVRLL 102
            TIT R+IQ AVRL 
Sbjct: 61  KTITPRDIQLAVRLD 75

Length = 75

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 84.1 bits (209), Expect = 3e-21
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 163 HRRKESYAIYIYKVLKQVHPD----TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218
             R     +   +V++++         +SSKA   +   + D+ E I  ++  LA + KR
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 219 STITSREIQTAVRLL 233
            TIT R+IQ AVRL 
Sbjct: 61  KTITPRDIQLAVRLD 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PLN00158	116	histone H2B; Provisional	100.0
PTZ00463	117	histone H2B; Provisional	100.0
PLN00158	116	histone H2B; Provisional	100.0
PTZ00463	117	histone H2B; Provisional	100.0
smart00427	89	H2B Histone H2B.	100.0
smart00427	89	H2B Histone H2B.	100.0
KOG1744|consensus	127		100.0
KOG1744|consensus	127		100.0
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.5
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.4
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	98.09
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	97.91
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	97.9
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	97.88
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	97.82
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	97.72
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	97.67
smart00803	65	TAF TATA box binding protein associated factor. TA	97.27
PLN00157	132	histone H2A; Provisional	97.25
PTZ00017	134	histone H2A; Provisional	97.17
PLN00153	129	histone H2A; Provisional	97.17
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	97.16
PLN00156	139	histone H2AX; Provisional	97.15
smart00428	105	H3 Histone H3.	97.14
smart00414	106	H2A Histone 2A.	97.13
PLN00035	103	histone H4; Provisional	97.0
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	96.98
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	96.93
cd00076	85	H4 Histone H4, one of the four histones, along wit	96.93
PTZ00252	134	histone H2A; Provisional	96.92
smart00803	65	TAF TATA box binding protein associated factor. TA	96.86
PTZ00015	102	histone H4; Provisional	96.85
PLN00035	103	histone H4; Provisional	96.85
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	96.84
cd00076	85	H4 Histone H4, one of the four histones, along wit	96.77
PLN00154	136	histone H2A; Provisional	96.67
PTZ00015	102	histone H4; Provisional	96.6
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	96.52
smart00428	105	H3 Histone H3.	96.51
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	96.01
KOG1756|consensus	131		95.96
smart00417	74	H4 Histone H4.	95.93
KOG0869|consensus	168		95.56
smart00417	74	H4 Histone H4.	95.53
KOG0871|consensus	156		94.93
KOG0869|consensus	168		94.87
KOG1142|consensus	258		94.87
PLN00121	136	histone H3; Provisional	94.71
KOG0871|consensus	156		94.57
PF02969	66	TAF: TATA box binding protein associated factor (T	94.54
PTZ00018	136	histone H3; Provisional	94.48
KOG1142|consensus	258		94.42
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	94.13
PLN00154	136	histone H2A; Provisional	94.06
smart00414	106	H2A Histone 2A.	93.95
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.93
PLN00156	139	histone H2AX; Provisional	93.81
PLN00157	132	histone H2A; Provisional	93.81
PTZ00017	134	histone H2A; Provisional	93.77
PLN00153	129	histone H2A; Provisional	93.14
PLN00161	135	histone H3; Provisional	92.87
smart00576	77	BTP Bromodomain transcription factors and PHD doma	92.82
PF15510	102	CENP-W: Centromere kinetochore component W	92.52
PF02969	66	TAF: TATA box binding protein associated factor (T	92.48
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	91.73
KOG0870|consensus	172		91.59
PF15510	102	CENP-W: Centromere kinetochore component W	91.53
PLN00160	97	histone H3; Provisional	91.51
smart00576	77	BTP Bromodomain transcription factors and PHD doma	91.4
PTZ00252	134	histone H2A; Provisional	91.39
PLN00121	136	histone H3; Provisional	91.08
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	90.99
PTZ00018	136	histone H3; Provisional	90.42
KOG0870|consensus	172		90.28
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	88.8
KOG1756|consensus	131		88.53
KOG1757|consensus	131		87.09
PLN00161	135	histone H3; Provisional	86.39
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	84.11
cd08048	85	TAF11 TATA Binding Protein (TBP) Associated Factor	83.91
PLN00160	97	histone H3; Provisional	82.89
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	81.7
PF15511	414	CENP-T: Centromere kinetochore component CENP-T; P	80.14

>PLN00158 histone H2B; Provisional

Probab=100.00  E-value=2.3e-51  Score=332.89  Aligned_cols=112  Identities=73%  Similarity=1.036  Sum_probs=102.1

Q ss_pred             CcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy13072        139 SSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR  218 (257)
Q Consensus       139 ~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr  218 (257)
                      +++|+.+++++      .++++++++|+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||++
T Consensus         5 ~~~k~~~~~~~------~~~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr   78 (116)
T PLN00158          5 PSKKPAKKAAK------GAKKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKK   78 (116)
T ss_pred             cchhhhhhccc------cccccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            44555555554      234667778899999999999999999999999999999999999999999999999999999


Q ss_pred             cccChhHHHHHHHHhcchHHHhhHHhhhhhhhhcccCC
Q psy13072        219 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS  256 (257)
Q Consensus       219 ~Tit~reIqtAvrllLpgeLakhAv~eG~kAV~ky~ss  256 (257)
                      +|||+||||+||||||||||+||||+|||+||++|+++
T Consensus        79 ~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~~~  116 (116)
T PLN00158         79 PTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA  116 (116)
T ss_pred             CcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999986

>PTZ00463 histone H2B; Provisional

Probab=100.00  E-value=1.9e-50  Score=327.44  Aligned_cols=98  Identities=70%  Similarity=1.067  Sum_probs=94.8

Q ss_pred             cccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchH
Q psy13072        158 DKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE  237 (257)
Q Consensus       158 ~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpge  237 (257)
                      ++++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+++|||+|||||||||+||||
T Consensus        19 ~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGE   98 (117)
T PTZ00463         19 KKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGE   98 (117)
T ss_pred             cccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHH
Confidence            45667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHhhhhhhhhcccC
Q psy13072        238 LAKHAVSEGTKAVTKYTS  255 (257)
Q Consensus       238 LakhAv~eG~kAV~ky~s  255 (257)
                      |+||||+|||+||++|++
T Consensus        99 LaKhAvsEGtkAv~k~~~  116 (117)
T PTZ00463         99 LAKHAVSEGTKAVTKFTS  116 (117)
T ss_pred             HHHhhhhHHHHHHHHhhc
Confidence            999999999999999986

>PLN00158 histone H2B; Provisional

Probab=100.00  E-value=3.4e-50  Score=326.01  Aligned_cols=114  Identities=73%  Similarity=1.024  Sum_probs=104.3

Q ss_pred             CCCCcchhhhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13072          4 GKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAH   83 (257)
Q Consensus         4 ~~~~~~~~~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~   83 (257)
                      +-+++++++|+++++        .+++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++|++
T Consensus         3 ~~~~~k~~~~~~~~~--------~kk~~~kr~esy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~   74 (116)
T PLN00158          3 KTPSKKPAKKAAKGA--------KKKGSKSKTETYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLAR   74 (116)
T ss_pred             CCcchhhhhhccccc--------cccccccccccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445666777766665        245677789999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCC
Q psy13072         84 YNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS  125 (257)
Q Consensus        84 ~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~  125 (257)
                      ||+++|||+||||+||||||||||+||||+||++||++|+++
T Consensus        75 ~nkr~TltsrEIqtAvrLvLpgELaKhAvsEGtkAv~k~~~~  116 (116)
T PLN00158         75 YNKKPTVTSREIQTAVRLILPGELAKHAVSEGTKAVTKFTSA  116 (116)
T ss_pred             ccCCCcCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999874

>PTZ00463 histone H2B; Provisional

Probab=100.00  E-value=5.3e-50  Score=324.86  Aligned_cols=113  Identities=67%  Similarity=0.992  Sum_probs=101.7

Q ss_pred             hhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q psy13072         12 KKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTIT   91 (257)
Q Consensus        12 ~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~Tlt   91 (257)
                      +|+|+++......+.++++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+++|||
T Consensus         4 ~~~~~~~~~~~~~~~~kk~~~kr~esy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~Tlt   83 (117)
T PTZ00463          4 KKPAKAKKAATGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLS   83 (117)
T ss_pred             ccccccccCCCCCCccccccccccchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence            45566665543222235667778999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCChhHHHhHHHhhhhhhhhccC
Q psy13072         92 SREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS  124 (257)
Q Consensus        92 sreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s  124 (257)
                      +|||||||||+|||||+||||+||++||++|++
T Consensus        84 srEIQtAvrLlLpGELaKhAvsEGtkAv~k~~~  116 (117)
T PTZ00463         84 SREIQTAIRLVLPGELAKHAVSEGTKAVTKFTS  116 (117)
T ss_pred             HHHHHHHHhhcccHHHHHhhhhHHHHHHHHhhc
Confidence            999999999999999999999999999999985

>smart00427 H2B Histone H2B

Probab=100.00  E-value=1.7e-48  Score=304.18  Aligned_cols=89  Identities=89%  Similarity=1.240  Sum_probs=87.8

Q ss_pred             chhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhhh
Q psy13072        167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG  246 (257)
Q Consensus       167 esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~eG  246 (257)
                      |+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+|||||+||||+||
T Consensus         1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEg   80 (89)
T smart00427        1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEG   80 (89)
T ss_pred             CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccC
Q psy13072        247 TKAVTKYTS  255 (257)
Q Consensus       247 ~kAV~ky~s  255 (257)
                      ||||++|++
T Consensus        81 tkAv~k~~~   89 (89)
T smart00427       81 TKAVTKYSS   89 (89)
T ss_pred             HHHHHhhcC
Confidence            999999985

>smart00427 H2B Histone H2B

Probab=100.00  E-value=4.4e-47  Score=296.20  Aligned_cols=89  Identities=89%  Similarity=1.240  Sum_probs=87.7

Q ss_pred             chhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhh
Q psy13072         36 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG  115 (257)
Q Consensus        36 esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG  115 (257)
                      |+|++||||||||||||+|||++||+||||||||||||||.||++|++||+++|||+||||+||||+|||||+||||+||
T Consensus         1 esy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~LpgeLakhAvsEg   80 (89)
T smart00427        1 ETYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLILPGELAKHAVSEG   80 (89)
T ss_pred             CcHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHccHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccC
Q psy13072        116 TKAVTKYTS  124 (257)
Q Consensus       116 ~kAV~ky~s  124 (257)
                      +|||++|++
T Consensus        81 tkAv~k~~~   89 (89)
T smart00427       81 TKAVTKYSS   89 (89)
T ss_pred             HHHHHhhcC
Confidence            999999974

>KOG1744|consensus

Probab=100.00  E-value=5e-44  Score=294.01  Aligned_cols=101  Identities=84%  Similarity=1.169  Sum_probs=97.9

Q ss_pred             ccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072        157 SDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  236 (257)
Q Consensus       157 ~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg  236 (257)
                      ++|++..++.|+|+.||||||||||||+|||++||+|||||+|||||+||.||++|++||+|+||++||||+||||+|||
T Consensus        27 ~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLllPg  106 (127)
T KOG1744|consen   27 AGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLLLPG  106 (127)
T ss_pred             ccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHhCch
Confidence            34777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHhhhhhhhhcccCCC
Q psy13072        237 ELAKHAVSEGTKAVTKYTSSK  257 (257)
Q Consensus       237 eLakhAv~eG~kAV~ky~ssk  257 (257)
                      ||++||++|||+||++|++++
T Consensus       107 el~khA~seGtkav~ky~~sk  127 (127)
T KOG1744|consen  107 ELAKHAVSEGTKAVTKYTSSK  127 (127)
T ss_pred             HHhhhhhcccchhheeeccCC
Confidence            999999999999999999985

>KOG1744|consensus

Probab=100.00  E-value=7.5e-43  Score=287.04  Aligned_cols=126  Identities=71%  Similarity=0.928  Sum_probs=109.1

Q ss_pred             CCCCCCCcchhhhhhccccc-ccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q psy13072          1 MAAGKSSGKAVKKAGKAQKN-IAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS   79 (257)
Q Consensus         1 ~~~~~~~~~~~~k~~k~~~~-~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs   79 (257)
                      |+..-+...++.+.+..+.. +.+++.+|++..++.|+|+.||||||||||||+|||++||+|||||+|||||+||.||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~k~~kk~gk~~~~~~~e~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~   80 (127)
T KOG1744|consen    1 MASPATKKAPGSKKFLPKAFKKAQKKAGKKRSTRRKESYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAG   80 (127)
T ss_pred             CCCcccccCCcccccccchhccccccccccCcccccCceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444455555554333333 34445557788999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCCC
Q psy13072         80 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (257)
Q Consensus        80 ~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~~  126 (257)
                      +|++||+++||++||||+||||+|||||++||++||++||++|++++
T Consensus        81 rla~y~krstisSreiqta~rLllPgel~khA~seGtkav~ky~~sk  127 (127)
T KOG1744|consen   81 RLAHYNKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  127 (127)
T ss_pred             hhhhhcCCCcccHHHHHHHHHHhCchHHhhhhhcccchhheeeccCC
Confidence            99999999999999999999999999999999999999999999864

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.50  E-value=2.3e-14  Score=106.42  Aligned_cols=68  Identities=31%  Similarity=0.430  Sum_probs=65.0

Q ss_pred             CCchhHHHHHHHhhhcCCC----CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        165 RKESYAIYIYKVLKQVHPD----TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       165 ~~esy~~YI~kVLKQVhpd----~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +...+..||.|++++++++    ..||+.||.+|+++++|++++|.++|..++.+++|.||+++|||.|+|+
T Consensus         3 ~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen    3 RRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             SHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             ccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            4567889999999999999    8999999999999999999999999999999999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.40  E-value=3.2e-13  Score=100.29  Aligned_cols=69  Identities=30%  Similarity=0.423  Sum_probs=65.6

Q ss_pred             cccchhHHHHHHHhhhhCCC----CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         33 RRKESYAIYIYKVLKQVHPD----TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        33 k~~esy~~yI~KVLKqVhpd----~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      ++...+..||+|++++++++    ..||++||.+|++++.|++.+|.++|..++.+++|.||+++|||.|+++
T Consensus         2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~   74 (75)
T PF00125_consen    2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI   74 (75)
T ss_dssp             HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred             cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence            34677899999999999999    8999999999999999999999999999999999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=98.09  E-value=1.6e-05  Score=59.74  Aligned_cols=60  Identities=17%  Similarity=0.402  Sum_probs=57.5

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +...++++.|+..++..|...|-.+.+|+.+.|+++|..||.+.++.||..+|||.+++-
T Consensus         7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981           7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            668899999999999999999999999999999999999999999999999999999864

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.91  E-value=5.6e-05  Score=56.80  Aligned_cols=60  Identities=17%  Similarity=0.402  Sum_probs=57.1

Q ss_pred             HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      +...++++.|...++..|...|-.+..|+.+.++.+|..||.+.++.||..+|||-+++-
T Consensus         7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981           7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999998874

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=97.90  E-value=2.9e-05  Score=61.51  Aligned_cols=63  Identities=25%  Similarity=0.407  Sum_probs=59.2

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  236 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg  236 (257)
                      |-|++|++.++ .||..|...|+..+..+++.|+++|..+|...+|.||+..||+.|.+.+.+.
T Consensus        25 v~Ri~r~~~~~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          25 VRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            67888888888 9999999999999999999999999999999999999999999999987654

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=97.88  E-value=3.5e-05  Score=63.33  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|.. =|+|.|++-..-..||..|..+|...+.++...|.+.|.+.++.+++.+||+|+|+.|++-
T Consensus        20 ~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n   85 (115)
T cd00074          20 QFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN   85 (115)
T ss_pred             cCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence            3443 4999999877779999999999999999999999999999999999999999999999983

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=97.82  E-value=7.2e-05  Score=54.44  Aligned_cols=58  Identities=28%  Similarity=0.458  Sum_probs=52.3

Q ss_pred             HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHH
Q psy13072        172 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV  230 (257)
Q Consensus       172 YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAv  230 (257)
                      =|.|++|+. || ..||..|...|+-....+.+.|+.+|...+..++|+||+.+||..||
T Consensus         7 ~vkri~k~~-~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    7 RVKRIMKSD-PDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHHT-STTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHHhccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            388999998 77 56999999999999999999999999999999999999999999986

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=97.72  E-value=0.00013  Score=53.08  Aligned_cols=58  Identities=28%  Similarity=0.458  Sum_probs=52.2

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHH
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV   99 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAv   99 (257)
                      =|.|++|+. || ..||.+|...|.-....+.+.|+.+|...+..++++||+.+||..|+
T Consensus         7 ~vkri~k~~-~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    7 RVKRIMKSD-PDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHHT-STTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHHhccC-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            488999999 66 56999999999999999999999999999999999999999999886

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=97.67  E-value=0.00011  Score=58.18  Aligned_cols=64  Identities=25%  Similarity=0.385  Sum_probs=59.6

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  105 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG  105 (257)
                      =|-|++|++.++ .+|..|...|+-.+..+++-|+.+|..++.+.+|+||+..||+.|.+.+.+.
T Consensus        24 pv~Ri~r~~~~~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          24 PVRRILRKAGAE-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             HHHHHHHHHhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            367888998888 9999999999999999999999999999999999999999999999987764

>smart00803 TAF TATA box binding protein associated factor

Probab=97.27  E-value=0.001  Score=49.32  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=52.5

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|.++.+...-+ .||..+..-|-..+.+..+.|+.+|..++++.+|.|||..||..|++
T Consensus         7 ~i~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        7 TIKDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            477778876543 69999999999999999999999999999999999999999988864

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>PLN00157 histone H2A; Provisional

Probab=97.25  E-value=0.00043  Score=58.28  Aligned_cols=66  Identities=26%  Similarity=0.266  Sum_probs=60.8

Q ss_pred             CchhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        166 KESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       166 ~esy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .-.|.. =|+|.|++-+....|+..|.-+|-..+.++..+|.+.|.+-++.+++..|++|+||.|++
T Consensus        24 gL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~   90 (132)
T PLN00157         24 GLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR   90 (132)
T ss_pred             CcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence            334554 599999998888999999999999999999999999999999999999999999999998

>PTZ00017 histone H2A; Provisional

Probab=97.17  E-value=0.00064  Score=57.38  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             chhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        167 ESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       167 esy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -.|.. =|+|.|+.-+.-..|+.-|.-+|-..+.++...|.+.|.+-++.+++..||+|+||.|++
T Consensus        26 L~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~   91 (134)
T PTZ00017         26 LQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR   91 (134)
T ss_pred             cccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence            34544 599999998888899999999999999999999999999999999999999999999998

>PLN00153 histone H2A; Provisional

Probab=97.17  E-value=0.00066  Score=56.99  Aligned_cols=66  Identities=20%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             CchhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        166 KESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       166 ~esy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .-.|.. =|+|.|++-+.-..|+.-|..+|-..+.++..+|.+.|.+-++.+++..|++|+||.||+
T Consensus        22 gL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~   88 (129)
T PLN00153         22 GLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR   88 (129)
T ss_pred             CcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence            344554 599999998888899999999999999999999999999999999999999999999998

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=97.16  E-value=0.0017  Score=48.80  Aligned_cols=59  Identities=19%  Similarity=0.412  Sum_probs=48.9

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      +...++||-|+..+...+..+|-.+.+|+.+.+.+.|++||.+.+..||..+|||....
T Consensus         5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen    5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            66789999999999999999999999999999999999999999999999999998654

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>PLN00156 histone H2AX; Provisional

Probab=97.15  E-value=0.0011  Score=56.25  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             chhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        167 ESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       167 esy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -.|.. =|+|.|+.-+....|+..|.-+|-..+.++..+|.+.|.+-++.+++..|++|+||.||+
T Consensus        28 L~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr   93 (139)
T PLN00156         28 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR   93 (139)
T ss_pred             cccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence            35655 599999998888899999999999999999999999999999999999999999999998

>smart00428 H3 Histone H3

Probab=97.14  E-value=0.0023  Score=51.98  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             CCchhHHHHHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        165 RKESYAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       165 ~~esy~~YI~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      ++-.|+.-+..+..+..+  |..+++.|+..|.....+....+.++|..++.+.+|.||+++|||.|.||-
T Consensus        31 ~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir  101 (105)
T smart00428       31 RKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR  101 (105)
T ss_pred             ccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence            345688888888888888  899999999999999999999999999999999999999999999999863

>smart00414 H2A Histone 2A

Probab=97.13  E-value=0.00093  Score=54.19  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|+|.|+.-..-..|++-|.-+|-..+.++...|.+.|.+-++.+++..||+|+||.|++
T Consensus        14 Ri~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~   73 (106)
T smart00414       14 RIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR   73 (106)
T ss_pred             HHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence            599999998888899999999999999999999999999999999999999999999998

>PLN00035 histone H4; Provisional

Probab=97.00  E-value=0.003  Score=51.19  Aligned_cols=60  Identities=12%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      -|.|+++.-. --.||..+..-+...++++++.|+.+|..++.+.+|.||+..||-.|++.
T Consensus        34 ~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         34 AIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR   93 (103)
T ss_pred             HHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            4777777654 46799999999999999999999999999999999999999999999874

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=96.98  E-value=0.0026  Score=47.72  Aligned_cols=59  Identities=19%  Similarity=0.412  Sum_probs=48.6

Q ss_pred             HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      +...++||-|+..+...+-.+|-.+.+|+.+.+...|++||.+.+..||..+|||...+
T Consensus         5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen    5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            56689999999999999999999999999999999999999999999999999998764

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=96.93  E-value=0.0016  Score=54.08  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -|.|+||.-...+.|++.|.-.+...+.++..+|.+-|.+-|+-+++..|++|.||.|+|
T Consensus        31 rvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr   90 (132)
T COG5262          31 RVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR   90 (132)
T ss_pred             HHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence            489999977888999999999999999999999999999999999999999999999998

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=96.93  E-value=0.0038  Score=48.88  Aligned_cols=60  Identities=13%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      -|.|+++.-. -..||..+..-+...++.+++.|+.+|..++.+.+|.||+..||-.|++.
T Consensus        18 ~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr   77 (85)
T cd00076          18 AIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR   77 (85)
T ss_pred             HHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            4777777543 46799999999999999999999999999999999999999999998874

>PTZ00252 histone H2A; Provisional

Probab=96.92  E-value=0.0019  Score=54.57  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             CchhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh--cCCcccChhHHHHHHH
Q psy13072        166 KESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHY--NKRSTITSREIQTAVR  231 (257)
Q Consensus       166 ~esy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~--~kr~Tit~reIqtAvr  231 (257)
                      .-.|.. -|+|.|++-+....|++-|.-+|-.++.++..+|.+.|.+-++.  +++..|++|+||.||+
T Consensus        23 GL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr   91 (134)
T PTZ00252         23 GLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR   91 (134)
T ss_pred             CccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence            345554 59999999998899999999999999999999999999999954  8999999999999998

>smart00803 TAF TATA box binding protein associated factor

Probab=96.86  E-value=0.0038  Score=46.29  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=51.6

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      .|.++.+...- ..||..+...|-..+.+..+.|+.+|..++++.+|+|||..||-.|++
T Consensus         7 ~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        7 TIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            46777777643 368999999999999999999999999999999999999999988764

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>PTZ00015 histone H4; Provisional

Probab=96.85  E-value=0.003  Score=51.10  Aligned_cols=61  Identities=15%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .-|.|+++.- -=-.||..+..-+..+++++++.|+.+|..++.+.+|.|++..||-.|++.
T Consensus        34 ~~IrRLarr~-GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         34 GAIRRLARRG-GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             HHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            4577777754 235699999999999999999999999999999999999999999998864

>PLN00035 histone H4; Provisional

Probab=96.85  E-value=0.0048  Score=50.03  Aligned_cols=61  Identities=11%  Similarity=0.151  Sum_probs=54.9

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .-|.|+++.-- --.||..+...+...+.++++.|+.+|..++.+.+|+||+..||..|++.
T Consensus        33 ~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         33 PAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR   93 (103)
T ss_pred             HHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            35778888764 46899999999999999999999999999999999999999999999875

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=96.84  E-value=0.003  Score=51.99  Aligned_cols=65  Identities=23%  Similarity=0.229  Sum_probs=58.1

Q ss_pred             chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      -.|. .=|+|.|++-.-..-||..|..-|-..+.++...|.+.|.+.++.+++.+||+++|+.|++
T Consensus        19 L~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~   84 (115)
T cd00074          19 LQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR   84 (115)
T ss_pred             ccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence            3454 3699999986666899999999999999999999999999999999999999999999998

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=96.77  E-value=0.006  Score=47.76  Aligned_cols=61  Identities=13%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .-|.|+++.-- -..||..+..-+...+..+++.|+.+|..++.+.+++|++..||..|++.
T Consensus        17 ~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr   77 (85)
T cd00076          17 PAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR   77 (85)
T ss_pred             HHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            35777777653 46789999999999999999999999999999999999999999988874

>PLN00154 histone H2A; Provisional

Probab=96.67  E-value=0.0055  Score=51.92  Aligned_cols=64  Identities=20%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             hhHH-HHHHHhhhcC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVH-PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVh-pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. =|.|.||+-. ....|++.|..+|-..+.++.-+|.+.|.+-++.+++..||+|+||.|++
T Consensus        38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr  103 (136)
T PLN00154         38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR  103 (136)
T ss_pred             cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence            4544 5899999975 46799999999999999999999999999999999999999999999998

>PTZ00015 histone H4; Provisional

Probab=96.60  E-value=0.0055  Score=49.56  Aligned_cols=61  Identities=15%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .-|.|+++.- ---.||..+...+...+.++++.|+.+|..++.+.+++|++..||..|++.
T Consensus        34 ~~IrRLarr~-GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         34 GAIRRLARRG-GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             HHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            4678888764 336789999999999999999999999999999999999999999888764

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.52  E-value=0.013  Score=48.16  Aligned_cols=64  Identities=11%  Similarity=0.172  Sum_probs=57.4

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  235 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLp  235 (257)
                      ..|.++||..+ ....+..+...|.-|+....+.|+.+|..++.+.+|.||+..||..|+...+.
T Consensus         5 ~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979           5 RVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             HHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            46888898652 34689999999999999999999999999999999999999999999998774

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>smart00428 H3 Histone H3

Probab=96.51  E-value=0.014  Score=47.44  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             ccchhHHHHHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         34 RKESYAIYIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        34 ~~esy~~yI~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ++-.|+..+..+..+..+  |.-+++.|+..|....-++...+.++|..++.+.++.||..+|||-|.+|-
T Consensus        31 ~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir  101 (105)
T smart00428       31 RKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIR  101 (105)
T ss_pred             ccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHh
Confidence            455788888888888888  899999999999999999999999999999999999999999999998864

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.01  E-value=0.032  Score=45.80  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             HHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072         39 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  104 (257)
Q Consensus        39 ~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLp  104 (257)
                      ...|.++|+.-. ....+..+...|--|+..+.+.|+.+|..++.+.+|+||+..||..|+...+.
T Consensus         4 ~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979           4 ARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             HHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            346888888752 24678999999999999999999999999999999999999999999987765

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>KOG1756|consensus

Probab=95.96  E-value=0.016  Score=48.66  Aligned_cols=60  Identities=23%  Similarity=0.282  Sum_probs=57.8

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -|.|.|+.-..-..|+.-|-.+|...+.++--.|.+-|.+-|+-|++..|++|.||.|++
T Consensus        32 ri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~   91 (131)
T KOG1756|consen   32 RIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR   91 (131)
T ss_pred             HHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence            699999998888999999999999999999999999999999999999999999999998

>smart00417 H4 Histone H4

Probab=95.93  E-value=0.015  Score=44.48  Aligned_cols=55  Identities=11%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQT  228 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqt  228 (257)
                      |.|+++.-. =-.||..+..-+..+++++++.|+.+|..++.+.+|.|++..||-.
T Consensus        19 IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~   73 (74)
T smart00417       19 IRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY   73 (74)
T ss_pred             HHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence            677777532 3468999999999999999999999999999999999999999853

>KOG0869|consensus

Probab=95.56  E-value=0.043  Score=47.68  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=55.5

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |-|+.|+.-|. ..||..|-..|.-.|..+..=|..||+.-|+..+|+||+..||..|+--|
T Consensus        38 V~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tL   99 (168)
T KOG0869|consen   38 VSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTL   99 (168)
T ss_pred             HHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHc
Confidence            66888888776 56999999999999999999999999999999999999999999998643

>smart00417 H4 Histone H4

Probab=95.53  E-value=0.018  Score=44.06  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ   96 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIq   96 (257)
                      -|.|+++.- ---.||..+..-+..++.++++.|+.+|..++.+.+++|++..||.
T Consensus        18 ~IrRLaRr~-GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~   72 (74)
T smart00417       18 AIRRLARRG-GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVV   72 (74)
T ss_pred             HHHHHHHHc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhe
Confidence            467777754 2356898999999999999999999999999999999999999985

>KOG0871|consensus

Probab=94.93  E-value=0.094  Score=45.22  Aligned_cols=65  Identities=22%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             HHHHhhhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchH
Q psy13072        173 IYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGE  237 (257)
Q Consensus       173 I~kVLKQVhp-d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpge  237 (257)
                      |.|++|.+-| |..+...|-++++..--.+..-|+.||...|....+.||.+..|+.|..-|==||
T Consensus        18 v~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~e   83 (156)
T KOG0871|consen   18 VNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGE   83 (156)
T ss_pred             HHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHH
Confidence            7899999999 9999999999999988889999999999999999999999999999987654343

>KOG0869|consensus

Probab=94.87  E-value=0.09  Score=45.77  Aligned_cols=62  Identities=21%  Similarity=0.348  Sum_probs=56.2

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      -|-|+.|..-|. ..||..|-..|--.|..+.-=|..||+.-|+..+|+||+..||..|+--|
T Consensus        37 NV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tL   99 (168)
T KOG0869|consen   37 NVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTL   99 (168)
T ss_pred             HHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHc
Confidence            467888888665 68999999999999999999999999999999999999999999998754

>KOG1142|consensus

Probab=94.87  E-value=0.035  Score=51.46  Aligned_cols=68  Identities=21%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH----hcchHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL----LLPGELA  239 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl----lLpgeLa  239 (257)
                      -+...|+||.+++.|....-++|--+..|+.|.|..-|+.||.+.|..||-.|||+..+.-    -|||.=+
T Consensus       159 kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~s  230 (258)
T KOG1142|consen  159 KLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSS  230 (258)
T ss_pred             chhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCccc
Confidence            3778999999999999999999999999999999999999999999999999999988753    4566533

>PLN00121 histone H3; Provisional

Probab=94.71  E-value=0.12  Score=43.80  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             CchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        166 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       166 ~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +-.|...+..+.....+++.+.+.|+.-|.--..+.+-.+-+++.-.+.+.+|.||.++|||.|.||
T Consensus        65 k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PLN00121         65 KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             cccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence            3467777777777778889999999999988888888888889999999999999999999999885

>KOG0871|consensus

Probab=94.57  E-value=0.13  Score=44.36  Aligned_cols=78  Identities=19%  Similarity=0.341  Sum_probs=65.9

Q ss_pred             HHHHHhhhhCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhh
Q psy13072         41 YIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAV  119 (257)
Q Consensus        41 yI~KVLKqVhp-d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV  119 (257)
                      -|.|+++.+-| |+.+..+|-++++..--.+..-|+.||.++|....++||....|+.|..-|-=||.    |.|...+.
T Consensus        17 tv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eY----iee~~~vl   92 (156)
T KOG0871|consen   17 TVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEY----IEEAEEVL   92 (156)
T ss_pred             HHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHH----HHHHHHHH
Confidence            47899999999 99999999998888888899999999999999999999999999999997766654    34444444


Q ss_pred             hhc
Q psy13072        120 TKY  122 (257)
Q Consensus       120 ~ky  122 (257)
                      ..|
T Consensus        93 ~~~   95 (156)
T KOG0871|consen   93 ENC   95 (156)
T ss_pred             HHH
Confidence            444

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=94.54  E-value=0.13  Score=38.54  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=38.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        185 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       185 ~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .++..+-..|-.=+++-+..|..||.++++..+|.+||+.||..|.|
T Consensus        20 ~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen   20 NLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             -B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            46778888888888889999999999999999999999999999976

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>PTZ00018 histone H3; Provisional

Probab=94.48  E-value=0.15  Score=43.33  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             CchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        166 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       166 ~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +-.|...+..+..+..+++.+.+.|+.-|.--..+.+-.+-+++.-.+.+.+|.||.++|||.|.||
T Consensus        65 k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PTZ00018         65 KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             cccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence            3457777777777777889999999999988888888888889999999999999999999999885

>KOG1142|consensus

Probab=94.42  E-value=0.052  Score=50.38  Aligned_cols=67  Identities=21%  Similarity=0.338  Sum_probs=60.0

Q ss_pred             HHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH----hCCh
Q psy13072         39 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL----LLPG  105 (257)
Q Consensus        39 ~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl----lLpG  105 (257)
                      ..-+...++||.++..|..+.-++|--+..|+.+.|..-|+.||.+.+..||-+|||+..++-    -+||
T Consensus       157 k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPg  227 (258)
T KOG1142|consen  157 KRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPG  227 (258)
T ss_pred             ccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCC
Confidence            345778999999999999999999999999999999999999999999999999999987653    4565

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=94.13  E-value=0.12  Score=43.09  Aligned_cols=90  Identities=20%  Similarity=0.231  Sum_probs=68.4

Q ss_pred             hhcccccccccchhhcccccccchhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCh
Q psy13072         14 AGKAQKNIAKSDKKKKKKHRRKESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITS   92 (257)
Q Consensus        14 ~~k~~~~~~~~~~~kk~~~k~~esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~Tlts   92 (257)
                      +||+..++.+++    +.-+..-.|- .-|.|+||.-.-.+.|++.|.--+...+..+.-.|.+-|.+-++-++++-|++
T Consensus         7 GgK~a~~r~~~s----~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~P   82 (132)
T COG5262           7 GGKAADARVSQS----RSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIP   82 (132)
T ss_pred             Ccccccchhccc----hhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceech
Confidence            566555444332    2222233444 36999999777779999999998888888888899999999999999999999


Q ss_pred             hHHHHHHHHhCChhHHH
Q psy13072         93 REIQTAVRLLLPGELAK  109 (257)
Q Consensus        93 reIqtAvrllLpGeLaK  109 (257)
                      |.||-|+|  =..||-+
T Consensus        83 rHlqlAIr--nD~EL~~   97 (132)
T COG5262          83 RHLQLAIR--NDEELNK   97 (132)
T ss_pred             HHHHHHhc--CcHHHHH
Confidence            99999998  5556633

>PLN00154 histone H2A; Provisional

Probab=94.06  E-value=0.21  Score=42.49  Aligned_cols=71  Identities=21%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             hhH-HHHHHHhhhhC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072         37 SYA-IYIYKVLKQVH-PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  109 (257)
Q Consensus        37 sy~-~yI~KVLKqVh-pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK  109 (257)
                      .|- .-|+|.|++.. -..-|++.|.--|-..+.++.-.|-+-|.+-++.+++.-||+|.||.|++  =..||..
T Consensus        38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr--nDeEL~~  110 (136)
T PLN00154         38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDT  110 (136)
T ss_pred             cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc--CcHHHHH
Confidence            454 47999999975 45688888888777777777777777788888999999999999999998  4455543

>smart00414 H2A Histone 2A

Probab=93.95  E-value=0.13  Score=41.80  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             hhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHH
Q psy13072         37 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA  108 (257)
Q Consensus        37 sy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLa  108 (257)
                      .|. ..|+|.|+.-.....|+.-|.--|-..+..+...|-+-|..-++.+++..||+|+|+.|++  -..||.
T Consensus         9 ~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~--nD~EL~   79 (106)
T smart00414        9 QFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR--NDEELN   79 (106)
T ss_pred             cCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc--CCHHHH
Confidence            344 4799999987766788888887777777777777777777778888999999999999998  455553

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=93.93  E-value=0.15  Score=48.67  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=46.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        185 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       185 ~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .+|..|...|..-+.+....|+.||.++++..+|.||+..||..|++.
T Consensus        16 ~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~   63 (343)
T cd08050          16 SLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL   63 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999997

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PLN00156 histone H2AX; Provisional

Probab=93.81  E-value=0.16  Score=43.28  Aligned_cols=71  Identities=24%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             cchhHH-HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         35 KESYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        35 ~esy~~-yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      .-.|.. -|+|.|+.-+-..-|+.-|.--|-..+.++...|-+-|.+-++.+++.-|++|.||.|++  -..||
T Consensus        27 gL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr--nDeEL   98 (139)
T PLN00156         27 GLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR--NDEEL   98 (139)
T ss_pred             CcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc--CcHHH
Confidence            345663 799999998777899999998888888888888888889999999999999999999998  44555

>PLN00157 histone H2A; Provisional

Probab=93.81  E-value=0.1  Score=44.09  Aligned_cols=72  Identities=26%  Similarity=0.229  Sum_probs=60.5

Q ss_pred             cchhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHH
Q psy13072         35 KESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA  108 (257)
Q Consensus        35 ~esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLa  108 (257)
                      .-.|. .-|+|.|++-+...-|+..|.--|-..+.++...|-+-|.+-++.+++.-|++|.||.|++  -..||.
T Consensus        24 gL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~--nDeEL~   96 (132)
T PLN00157         24 GLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR--NDEELS   96 (132)
T ss_pred             CcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc--CcHHHH
Confidence            34565 4799999998777899999998888888888888888888999999999999999999998  445553

>PTZ00017 histone H2A; Provisional

Probab=93.77  E-value=0.11  Score=43.90  Aligned_cols=72  Identities=22%  Similarity=0.216  Sum_probs=57.9

Q ss_pred             cchhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHH
Q psy13072         35 KESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA  108 (257)
Q Consensus        35 ~esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLa  108 (257)
                      --.|. .=|+|.|+.-....-|+.-|.--|-..+..++..|-+-|.+-++.+++.-||+|+||.|++  -..||.
T Consensus        25 gL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~--nDeEL~   97 (134)
T PTZ00017         25 GLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR--NDEELN   97 (134)
T ss_pred             CcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc--CcHHHH
Confidence            34555 3799999987777788888888777777777777888888889999999999999999998  444553

>PLN00153 histone H2A; Provisional

Probab=93.14  E-value=0.17  Score=42.59  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             cchhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         35 KESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        35 ~esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      .-.|. .=|+|.|++-+...-|+.-|.--|-..+..+...|-+-|.+-++.+++.-|++|.||.|++  -..||
T Consensus        22 gL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~--nDeEL   93 (129)
T PLN00153         22 GLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR--NDEEL   93 (129)
T ss_pred             CcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc--CcHHH
Confidence            44565 3799999998777899999998888888888888888888899999999999999999998  44455

>PLN00161 histone H3; Provisional

Probab=92.87  E-value=0.51  Score=40.08  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             CchhHHHHHHHhhhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        166 KESYAIYIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       166 ~esy~~YI~kVLKQVhp-d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +-.|+.-+..+..+..+ |+.+.+.|+.-|..-..+.+-.+-+++.-.+.+.+|.||.++|||.|.||
T Consensus        58 klPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~ri  125 (135)
T PLN00161         58 KLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRI  125 (135)
T ss_pred             cccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence            34566666666655544 68899999999988888887788888988999999999999999999886

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=92.82  E-value=0.59  Score=35.22  Aligned_cols=59  Identities=8%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      |-++|+... --.++..|++.|-.++.+.+..|+.++..++...+|.+.+..||..|+.-
T Consensus        12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~   70 (77)
T smart00576       12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN   70 (77)
T ss_pred             HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            444444331 24578899999999999999999999999999999999999999988763

subdomain of archael histone-like transcription factors

>PF15510 CENP-W: Centromere kinetochore component W

Probab=92.52  E-value=0.21  Score=40.05  Aligned_cols=64  Identities=22%  Similarity=0.367  Sum_probs=50.5

Q ss_pred             HHHHHHHhhhcCCCCCcch--HHH--------------HHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        170 AIYIYKVLKQVHPDTGVSS--KAM--------------SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       170 ~~YI~kVLKQVhpd~~ISs--kAM--------------~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      ..++.+|+|+--|.+.+..  ..|              --||.++  +..|+|+||---|..||..+|-...|+.|.+.+
T Consensus        19 rgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLL--FvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKvi   96 (102)
T PF15510_consen   19 RGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLL--FVHRLAEEARTNACENKCGTIKKEHVLAAAKVI   96 (102)
T ss_pred             hHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3678899998888877743  333              2234433  457999999999999999999999999999988


Q ss_pred             cc
Q psy13072        234 LP  235 (257)
Q Consensus       234 Lp  235 (257)
                      |.
T Consensus        97 LK   98 (102)
T PF15510_consen   97 LK   98 (102)
T ss_pred             HH
Confidence            74

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=92.48  E-value=0.45  Score=35.65  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=36.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         54 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        54 ~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      .++..+-..|-.=+..-...|..||.++++..+|.+||..||..|.|
T Consensus        20 ~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen   20 NLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             -B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            44666667777777777888999999999999999999999999875

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=91.73  E-value=0.42  Score=45.58  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=45.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         54 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        54 ~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .+|..|...|..-+.+....|+.||..+++..+|+||+..||..|++.
T Consensus        16 ~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~   63 (343)
T cd08050          16 SLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRL   63 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            668899999999999999999999999999999999999999999997

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG0870|consensus

Probab=91.59  E-value=0.78  Score=40.28  Aligned_cols=68  Identities=19%  Similarity=0.256  Sum_probs=52.9

Q ss_pred             HHHHHHhhhhCCC--CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         40 IYIYKVLKQVHPD--TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        40 ~yI~KVLKqVhpd--~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      .-|-|+.|.+-|+  .+||..|...|-.-..=+.--+..-|..+|+-++|+||+..||..|.+-+==.++
T Consensus        14 AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f   83 (172)
T KOG0870|consen   14 AIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF   83 (172)
T ss_pred             HHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH
Confidence            3577788888776  5899999987766555555566777888999999999999999999986543333

>PF15510 CENP-W: Centromere kinetochore component W

Probab=91.53  E-value=0.4  Score=38.48  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=51.9

Q ss_pred             HHHHHHhhhhCCCCCc--chHHH--------------HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhC
Q psy13072         40 IYIYKVLKQVHPDTGV--SSKAM--------------SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  103 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~I--Sskam--------------~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllL  103 (257)
                      .++.+|+|+--|.+.+  +...|              --||.++  +..|+|+||-.-+.-|++.||....|+.|...+|
T Consensus        20 gfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLL--FvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaKviL   97 (102)
T PF15510_consen   20 GFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLL--FVHRLAEEARTNACENKCGTIKKEHVLAAAKVIL   97 (102)
T ss_pred             HHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            5688899988888665  45555              3456555  6789999999999999999999999999999887


Q ss_pred             C
Q psy13072        104 P  104 (257)
Q Consensus       104 p  104 (257)
                      .
T Consensus        98 K   98 (102)
T PF15510_consen   98 K   98 (102)
T ss_pred             H
Confidence            5

>PLN00160 histone H3; Provisional

Probab=91.51  E-value=0.95  Score=36.41  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             hhHHHHHHHhhhcC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        168 SYAIYIYKVLKQVH-PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       168 sy~~YI~kVLKQVh-pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|..-+..+.-... .+..+.+.|+.-|---..+.+-.+-+++.-.+.+.||-||.++|||.|.|+
T Consensus        26 pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri   91 (97)
T PLN00160         26 PFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI   91 (97)
T ss_pred             cHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence            35555555444433 348899999999988888877777788888999999999999999999874

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=91.40  E-value=1  Score=33.90  Aligned_cols=48  Identities=8%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         54 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        54 ~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .++..|++.|-.++.+++..|+.++..++...+|.+.+..||..|+.-
T Consensus        23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~   70 (77)
T smart00576       23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN   70 (77)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            467788888888999999999999999999999999999999988764

subdomain of archael histone-like transcription factors

>PTZ00252 histone H2A; Provisional

Probab=91.39  E-value=0.46  Score=40.30  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             cchhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--hcCCCCCChhHHHHHHHHhCChhH
Q psy13072         35 KESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAH--YNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        35 ~esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~--~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      .-.|. .-|+|.|++-+...-|+.-|.--|-..+.+++..|-+-|.+-++  .+++.-|++|.||.||+  =..||
T Consensus        23 GL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr--NDeEL   96 (134)
T PTZ00252         23 GLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR--HDDDL   96 (134)
T ss_pred             CccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc--ChHHH
Confidence            44566 37999999988888999989887777777777777777777664  37889999999999998  44455

>PLN00121 histone H3; Provisional

Probab=91.08  E-value=0.89  Score=38.64  Aligned_cols=66  Identities=18%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             chhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         36 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        36 esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -.|+..+..+.....+++-+.+.|+.-|---..+++-.+-+++.-.+.+.+|-||..+|||-|.||
T Consensus        66 ~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PLN00121         66 LPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             ccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHh
Confidence            347777777777778889999999987766666666666667888889999999999999999875

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=90.99  E-value=0.7  Score=35.44  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             HHHHhhhc--CCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQV--HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQV--hpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      +-++..++  ..+..+|.+.+.-|.-++.+..+.++.+---.|+..+|+||+..|+...+|
T Consensus        11 v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R   71 (76)
T PF15630_consen   11 VGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR   71 (76)
T ss_dssp             HHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred             HHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence            44555665  466789999999999999999999999999999999999999999876554

>PTZ00018 histone H3; Provisional

Probab=90.42  E-value=1.1  Score=38.13  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             hhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         37 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        37 sy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .|+..+..+..+..+++-+.+.|+..|---..+++-.+-+++.-.+.+.++-||..+|||-|.||
T Consensus        67 pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ri  131 (136)
T PTZ00018         67 PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_pred             cHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHh
Confidence            46777777777777889999999987776666666666667888889999999999999999875

>KOG0870|consensus

Probab=90.28  E-value=1.3  Score=39.04  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             HHHHHHhhhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        171 IYIYKVLKQVHPD--TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       171 ~YI~kVLKQVhpd--~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .-|-|+.|.+-|+  ..||..|...|-.-..=+.--+..-|..+|.-++|+||+..||..|.+-+
T Consensus        14 AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Ei   78 (172)
T KOG0870|consen   14 AIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEI   78 (172)
T ss_pred             HHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHh
Confidence            4577888888887  58999998888765444445566778889999999999999999999864

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=88.80  E-value=1.3  Score=34.04  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             HHHHhhhh--CCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQV--HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqV--hpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      +-++..++  ..++.+|.+.+..|.-++.+..+.++.+---.+++.+|+||+..|+.-.+|
T Consensus        11 v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R   71 (76)
T PF15630_consen   11 VGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR   71 (76)
T ss_dssp             HHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred             HHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence            34555555  467889999999999999999999999999999999999999999865443

>KOG1756|consensus

Probab=88.53  E-value=1.1  Score=37.83  Aligned_cols=67  Identities=25%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  109 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK  109 (257)
                      -|.|.|+.-....-|+.-|-.-|-..+..+.-.|.+-|..-++-|++.-|++|.||-|++  =..||.+
T Consensus        32 ri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~--NDeEL~~   98 (131)
T KOG1756|consen   32 RIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR--NDEELNK   98 (131)
T ss_pred             HHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh--CcHHHHH
Confidence            799999998888899999888777777666677777777778899999999999999998  4555544

>KOG1757|consensus

Probab=87.09  E-value=0.74  Score=38.26  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             hhHH-HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. -|+|-||+-... ..+-..|.-++.+++.++.-.+.+-|.+-+.--+-..||+|.+|.|+|
T Consensus        30 qFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiR   95 (131)
T KOG1757|consen   30 QFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   95 (131)
T ss_pred             ccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeec
Confidence            3443 488999986443 557788999999999999999988888888888899999999999998

>PLN00161 histone H3; Provisional

Probab=86.39  E-value=3.5  Score=35.06  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             hhHHHHHHHhhhhCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         37 SYAIYIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        37 sy~~yI~KVLKqVhp-d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      .|+.-+..+..+..+ |+-+.+.|+..|--...+.+-.+-+++.-.+.+.++-||..+|||-|.||-
T Consensus        60 PF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rir  126 (135)
T PLN00161         60 PFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIR  126 (135)
T ss_pred             cHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhc
Confidence            466666666655544 688899999877666655555555677778889999999999999998863

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=84.11  E-value=6.2  Score=29.38  Aligned_cols=48  Identities=13%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        184 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       184 ~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .+++..|++.|..++.+.+..|+..+...+...+|...+..||..|..
T Consensus        22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~   69 (77)
T PF07524_consen   22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE   69 (77)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            568899999999999999999999999999999999999999998875

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=83.91  E-value=6.1  Score=30.84  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC---cccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR---STITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr---~Tit~reIqtAvrll  233 (257)
                      |.|++.++- +..++.....+|..+-.-+.-.|.++|..+......   ..|.+++|..|.|.+
T Consensus        22 iKr~~~~~~-~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl   84 (85)
T cd08048          22 IKRLIQSVT-GQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL   84 (85)
T ss_pred             HHHHHHHHc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence            566677665 478888888888888888888999999999887665   899999999999976

The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes

>PLN00160 histone H3; Provisional

Probab=82.89  E-value=6.5  Score=31.66  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             cchhHHHHHHHhhhhCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         35 KESYAIYIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        35 ~esy~~yI~KVLKqVhp-d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      +-.|+.-+..+.....+ +.-+.+.|+..|---.-+.+-.+-+++.-.+.+.+|-||.++|||-|.|+
T Consensus        24 k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~ri   91 (97)
T PLN00160         24 RLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRI   91 (97)
T ss_pred             cccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHh
Confidence            34566656555554433 47889999887766555555555567777888999999999999999874

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=81.70  E-value=8.2  Score=28.71  Aligned_cols=49  Identities=12%  Similarity=0.268  Sum_probs=44.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         53 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        53 ~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -+++..|+++|-.++.+.+..|+..+...+...+|...+..||..|..-
T Consensus        22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~   70 (77)
T PF07524_consen   22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEE   70 (77)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999888763

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T

Probab=80.14  E-value=3.4  Score=40.58  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             HHHHHHhhhh-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhH
Q psy13072         40 IYIYKVLKQV-----HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSRE   94 (257)
Q Consensus        40 ~yI~KVLKqV-----hpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~Tltsre   94 (257)
                      ..|.+++...     +-.+.|+..||..+......+||.|+..=..++.+.+|+||...|
T Consensus       355 ~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD  414 (414)
T PF15511_consen  355 GVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD  414 (414)
T ss_dssp             HHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred             cHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3555555544     346899999999999999999999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
2pyo_D	122	Drosophila Nucleosome Core Length = 122		5e-48
2nqb_D	123	Drosophila Nucleosome Structure Length = 123		2e-47
2f8n_H	123	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		2e-46
2f8n_H	123	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		2e-46
3c9k_B	125	Model Of Histone Octamer Tubular Crystals Length =		2e-46
3c9k_B	125	Model Of Histone Octamer Tubular Crystals Length =		2e-46
1s32_D	122	Molecular Recognition Of The Nucleosomal 'supergroo		2e-46
1s32_D	122	Molecular Recognition Of The Nucleosomal 'supergroo		2e-46
1p34_D	125	Crystallographic Studies Of Nucleosome Core Particl		2e-46
1p34_D	125	Crystallographic Studies Of Nucleosome Core Particl		2e-46
1zla_D	125	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		2e-46
1zla_D	125	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		2e-46
1kx3_D	125	X-Ray Structure Of The Nucleosome Core Particle, Nc		2e-46
1kx3_D	125	X-Ray Structure Of The Nucleosome Core Particle, Nc		2e-46
3c1b_D	125	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		2e-46
3c1b_D	125	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		2e-46
1f66_D	126	2.6 A Crystal Structure Of A Nucleosome Core Partic		2e-46
1f66_D	126	2.6 A Crystal Structure Of A Nucleosome Core Partic		2e-46
1aoi_D	99	Complex Between Nucleosome Core Particle (H3,H4,H2a		5e-46
1aoi_D	99	Complex Between Nucleosome Core Particle (H3,H4,H2a		5e-46
3kwq_D	93	Structural Characterization Of H3k56q Nucleosomes A		6e-46
3kwq_D	93	Structural Characterization Of H3k56q Nucleosomes A		6e-46
2hio_B	125	Histone Octamer (Chicken), Chromosomal Protein Leng		6e-46
2hio_B	125	Histone Octamer (Chicken), Chromosomal Protein Leng		6e-46
1eqz_B	126	X-Ray Structure Of The Nucleosome Core Particle At		7e-46
1eqz_B	126	X-Ray Structure Of The Nucleosome Core Particle At		7e-46
3a6n_D	129	The Nucleosome Containing A Testis-Specific Histone		9e-46
3a6n_D	129	The Nucleosome Containing A Testis-Specific Histone		9e-46
1u35_D	126	Crystal Structure Of The Nucleosome Core Particle C		1e-45
1u35_D	126	Crystal Structure Of The Nucleosome Core Particle C		1e-45
2cv5_D	126	Crystal Structure Of Human Nucleosome Core Particle		1e-45
2cv5_D	126	Crystal Structure Of Human Nucleosome Core Particle		1e-45
2xql_B	90	Fitting Of The H2a-H2b Histones In The Electron Mic		6e-45
2xql_B	90	Fitting Of The H2a-H2b Histones In The Electron Mic		6e-45
3an2_D	129	The Structure Of The Centromeric Nucleosome Contain		4e-44
3an2_D	129	The Structure Of The Centromeric Nucleosome Contain		4e-44
1hio_B	90	Histone Octamer (Chicken), Chromosomal Protein, Alp		1e-42
1hio_B	90	Histone Octamer (Chicken), Chromosomal Protein, Alp		1e-42
1id3_D	130	Crystal Structure Of The Yeast Nucleosome Core Part		2e-39
1id3_D	130	Crystal Structure Of The Yeast Nucleosome Core Part		2e-39
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		1e-37
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		1e-37

>pdb|2PYO|D Chain D, Drosophila Nucleosome Core Length = 122

Iteration: 1
 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/107 (86%), Positives = 95/107 (88%)
Query: 151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
           QKNI            ESYAIYIYKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 16  QKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 75
Query: 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 76  RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 122

>pdb|2NQB|D Chain D, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 94/107 (87%)
Query: 151 QKNIAXXXXXXXXXXXESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS 210
           QKNI            ESYAIYIY VLKQVHPDTG+SSKAMSIMNSFVNDIFERIAAE+S
Sbjct: 17  QKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEAS 76
Query: 211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 77  RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 123

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 33  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 92
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 123

>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 123

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 33  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 92
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 123

>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals Length = 125

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/91 (94%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125

>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals Length = 125

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/91 (94%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKAMSIMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125

>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 122

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 32  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 91
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 92  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 122

>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 122

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 32  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 91
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 92  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 122

>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 125

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 125

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 125

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 125

>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 126

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126

>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 126

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126

>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 99

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 9   ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 68
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 69  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 99

>pdb|1AOI|D Chain D, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 99

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 9   ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 68
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 69  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 99

>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 93

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 3   ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 62
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 63  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 93

>pdb|3KWQ|D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 93

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESYAIY+YKVLKQVHPDTG+SSKAMSIMNSFVND+FERIA E+SRLAHYNKRSTITSREI
Sbjct: 3   ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 62
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 63  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 93

>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein Length = 125

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125

>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein Length = 125

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 35  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 94
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125

>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 126

Iteration: 1
 Score =  180 bits (457), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126

>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 126

Iteration: 1
 Score =  180 bits (457), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126

>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 129

Iteration: 1
 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129

>pdb|3A6N|D Chain D, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 129

Iteration: 1
 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 89/91 (97%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129

>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 126

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 90/91 (98%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+
Sbjct: 36  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREV 95
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126

>pdb|1U35|D Chain D, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 126

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 90/91 (98%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA+E+SRLAHYNKRSTITSRE+
Sbjct: 36  ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREV 95
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126

>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle Length = 126

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 89/91 (97%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY++Y+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126

>pdb|2CV5|D Chain D, Crystal Structure Of Human Nucleosome Core Particle Length = 126

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 89/91 (97%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY++Y+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 36  ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126

>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 90

Iteration: 1
 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/90 (93%), Positives = 88/90 (97%)
Query: 37  SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 96
           SY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQ
Sbjct: 1   SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 60
Query: 97  TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 61  TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 90

>pdb|2XQL|B Chain B, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 90

Iteration: 1
 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/90 (93%), Positives = 88/90 (97%)
Query: 168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 227
           SY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQ
Sbjct: 1   SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQ 60
Query: 228 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           TAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 61  TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 90

>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 129

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           ESY+IY+YKVLKQVHPDTG+SSKA  I NSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39  ESYSIYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129

>pdb|3AN2|D Chain D, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 129

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 87/91 (95%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           ESY+IY+YKVLKQVHPDTG+SSKA  I NSFVNDIFERIA E+SRLAHYNKRSTITSREI
Sbjct: 39  ESYSIYVYKVLKQVHPDTGISSKAXGIXNSFVNDIFERIAGEASRLAHYNKRSTITSREI 98
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           QTAVRLLLPGELAKHAVSEGTKAVTKYTS+K
Sbjct: 99  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 129

>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 90

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)
Query: 37  SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 96
           SY+IY+YKVLKQVHPDTG+SSKAM  MNSFVNDIFERIA  +SRLAHYNKRSTITSREIQ
Sbjct: 1   SYSIYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQ 60
Query: 97  TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
           TAVRLLLPGELAKHAVSEGTKAVTK+TSSK
Sbjct: 61  TAVRLLLPGELAKHAVSEGTKAVTKHTSSK 90

>pdb|1HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 90

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)
Query: 168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQ 227
           SY+IY+YKVLKQVHPDTG+SSKAM  MNSFVNDIFERIA  +SRLAHYNKRSTITSREIQ
Sbjct: 1   SYSIYVYKVLKQVHPDTGISSKAMGSMNSFVNDIFERIAGLASRLAHYNKRSTITSREIQ 60
Query: 228 TAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           TAVRLLLPGELAKHAVSEGTKAVTK+TSSK
Sbjct: 61  TAVRLLLPGELAKHAVSEGTKAVTKHTSSK 90

>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 130

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 85/90 (94%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 38  ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 97
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
           QTAVRL+LPGELAKHAVSEGT+AVTKY+SS
Sbjct: 98  QTAVRLILPGELAKHAVSEGTRAVTKYSSS 127

>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 130

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 85/90 (94%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 38  ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 97
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
           QTAVRL+LPGELAKHAVSEGT+AVTKY+SS
Sbjct: 98  QTAVRLILPGELAKHAVSEGTRAVTKYSSS 127

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 82/87 (94%)
Query: 36  ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 95
           E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 3   ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 62
Query: 96  QTAVRLLLPGELAKHAVSEGTKAVTKY 122
           QTAVRL+LPGELAKHAVSEGT+AVTKY
Sbjct: 63  QTAVRLILPGELAKHAVSEGTRAVTKY 89

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 82/87 (94%)
Query: 167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREI 226
           E+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++REI
Sbjct: 3   ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREI 62
Query: 227 QTAVRLLLPGELAKHAVSEGTKAVTKY 253
           QTAVRL+LPGELAKHAVSEGT+AVTKY
Sbjct: 63  QTAVRLILPGELAKHAVSEGTRAVTKY 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	1e-41
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	8e-40
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	4e-38
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	3e-36
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	1e-30
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	3e-29
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score =  138 bits (348), Expect = 1e-41
 Identities = 111/120 (92%), Positives = 116/120 (96%)

Query: 138 KSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSF 197
           K+SGKA KKAGKAQKNI K+DKKKK +RKESYAIYIY VLKQVHPDTG+SSKAMSIMNSF
Sbjct: 4   KTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSF 63

Query: 198 VNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
           VNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 64  VNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Length = 123

 Score =  133 bits (335), Expect = 8e-40
 Identities = 112/122 (91%), Positives = 117/122 (95%), Gaps = 2/122 (1%)

Query: 5   KSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMN 64
           K+SGKA KKAGKAQKNI K+DKKKK+K  RKESYAIYIY VLKQVHPDTG+SSKAMSIMN
Sbjct: 4   KTSGKAAKKAGKAQKNITKTDKKKKRK--RKESYAIYIYTVLKQVHPDTGISSKAMSIMN 61

Query: 65  SFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
           SFVNDIFERIAAE+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Sbjct: 62  SFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 121

Query: 125 SK 126
           SK
Sbjct: 122 SK 123

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score =  129 bits (324), Expect = 4e-38
 Identities = 96/126 (76%), Positives = 102/126 (80%)

Query: 1   MAAGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAM 60
           M     S  A KK  K      +    KK+K  RKESY+IY+YKVLKQVHPDTG+SSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 61  SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120
            IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 121 KYTSSK 126
           KYTSSK
Sbjct: 121 KYTSSK 126

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Length = 126

 Score =  124 bits (312), Expect = 3e-36
 Identities = 99/126 (78%), Positives = 104/126 (82%), Gaps = 2/126 (1%)

Query: 134 MAAGKSSGKAVKKAGK--AQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAM 191
           M     S  A KK  K    K   K DKK+K  RKESY+IY+YKVLKQVHPDTG+SSKAM
Sbjct: 1   MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAM 60

Query: 192 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 251
            IMNSFVNDIFERIA E+SRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
Sbjct: 61  GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT 120

Query: 252 KYTSSK 257
           KYTSSK
Sbjct: 121 KYTSSK 126

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score =  112 bits (279), Expect = 1e-30
 Identities = 85/198 (42%), Positives = 110/198 (55%), Gaps = 28/198 (14%)

Query: 34  RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 93
           RKE+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++R
Sbjct: 1   RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR 60

Query: 94  EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKN 153
           EIQTAVRL+LPGELAKHAVSEGT+AVTKY                              +
Sbjct: 61  EIQTAVRLILPGELAKHAVSEGTRAVTKY----------------------------SSS 92

Query: 154 IAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLA 213
                   +   +         + +     T V SKA   + + +  +   +   +   A
Sbjct: 93  TQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAA 152

Query: 214 HYNKRSTITSREIQTAVR 231
              K   IT R +Q A+R
Sbjct: 153 KDLKVKRITPRHLQLAIR 170

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score =  108 bits (269), Expect = 3e-29
 Identities = 72/90 (80%), Positives = 85/90 (94%)

Query: 165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 224
           RKE+Y+ YIYKVLKQ HPDTG+S K+MSI+NSFVNDIFERIA E+S+LA YNK+STI++R
Sbjct: 1   RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR 60

Query: 225 EIQTAVRLLLPGELAKHAVSEGTKAVTKYT 254
           EIQTAVRL+LPGELAKHAVSEGT+AVTKY+
Sbjct: 61  EIQTAVRLILPGELAKHAVSEGTRAVTKYS 90

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 11/193 (5%)

Query: 50  HPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL-----LLP 104
             D    S A+  +          +   ++ LA + KR TI  +++Q A R+     +  
Sbjct: 32  DQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPR 91

Query: 105 GELAKHAVSEG------TKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSD 158
           G + +H +++       +  ++KY S +       +  G+              N  K  
Sbjct: 92  GSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDK 151

Query: 159 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218
           + K             +          +S      + + +    E +  +S     + KR
Sbjct: 152 RTKYTSVLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKR 211

Query: 219 STITSREIQTAVR 231
            T+TS ++  A++
Sbjct: 212 KTVTSLDVVYALK 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 63/234 (26%)

Query: 44  KVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL 103
           K+L        ++++   + +         I+ +       +   T+T  E      LLL
Sbjct: 267 KIL--------LTTRFKQVTDFLSAATTTHISLD-------HHSMTLTPDE---VKSLLL 308

Query: 104 ------PGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQ-KNIAK 156
                 P +L +  +              +NP +  + A         + G A   N   
Sbjct: 309 KYLDCRPQDLPREVL-------------TTNPRRLSIIA------ESIRDGLATWDNWKH 349

Query: 157 SDKKKKHR-RKESYAIYIYKVLKQ------VHP-DTGVSSKAMSIM--NSFVNDIFERIA 206
            +  K     + S  +      ++      V P    + +  +S++  +   +D+   + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVV 408

Query: 207 AE---SSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 257
            +    S +    K STI+   I   +++ L  E A H        V  Y   K
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIPK 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 32/245 (13%), Positives = 69/245 (28%), Gaps = 63/245 (25%)

Query: 23  KSDKKKKKKHRRKESYAIYIYKVLKQ------VHP-DTGVSSKAMSIM--NSFVNDIFER 73
           K     K     + S  +      ++      V P    + +  +S++  +   +D+   
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MV 406

Query: 74  IAAE---SSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNP- 129
           +  +    S +    K STI+   I   +++ L  E A H        V  Y   K+   
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDS 461

Query: 130 --------------------------------------LQFIMAAGKSSGKAVKKAGKAQ 151
                                                  +F+    +    A   +G   
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 152 KNIAKSDKKKKH-----RRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIA 206
             + +    K +      + E     I   L ++  +  + SK   ++   +    E I 
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEAIF 580

Query: 207 AESSR 211
            E+ +
Sbjct: 581 EEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	100.0
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	100.0
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	100.0
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	100.0
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	100.0
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	100.0
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	99.53
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	99.52
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	99.49
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.85
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.71
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	98.69
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.44
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	98.11
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	98.09
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	97.94
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	97.91
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	97.91
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	97.9
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	97.89
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	97.85
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	97.85
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	97.8
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	97.78
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	97.74
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.7
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	97.65
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	97.59
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	97.54
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.5
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	97.43
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	97.42
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	97.37
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	97.36
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	97.33
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	97.3
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	97.28
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	97.28
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.24
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	97.21
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	97.19
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	97.16
1taf_B	70	TFIID TBP associated factor 62; transcription init	97.14
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	97.1
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	97.07
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.05
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	97.03
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	97.02
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	96.94
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	96.92
1taf_A	68	TFIID TBP associated factor 42; transcription init	96.91
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	96.87
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	96.85
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	96.76
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	96.76
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	96.76
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	96.75
1taf_B	70	TFIID TBP associated factor 62; transcription init	96.65
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	96.6
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	96.57
3r45_A	156	Histone H3-like centromeric protein A; histone fol	96.56
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	96.53
1taf_A	68	TFIID TBP associated factor 42; transcription init	96.46
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	96.44
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	96.41
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	96.41
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	96.14
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	96.14
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	96.14
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	96.07
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	96.07
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	95.91
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	95.89
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	95.84
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	95.75
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	95.72
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	95.52
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	95.37
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	95.33
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	95.24
3r45_A	156	Histone H3-like centromeric protein A; histone fol	95.02
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	93.79
1bh9_B	89	TAFII28; histone fold, tata binding protein, trans	86.35

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=100.00  E-value=9.9e-53  Score=344.53  Aligned_cols=121  Identities=83%  Similarity=1.077  Sum_probs=91.5

Q ss_pred             hhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q psy13072        131 QFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESS  210 (257)
Q Consensus       131 ~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs  210 (257)
                      ...|++++++++..++.+.      +++++++++++|+|++||||||||||||+|||++||+||||||||||||||.||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~------~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs   79 (126)
T 1tzy_B            6 KSAPAPKKGSKKAVTKTQK------KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEAS   79 (126)
T ss_dssp             ----------------------------------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccchhhccccccc------CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555444333331      3456778889999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhhhhhhhhcccCCC
Q psy13072        211 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  257 (257)
Q Consensus       211 ~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~eG~kAV~ky~ssk  257 (257)
                      +|++||+|+|||+||||+|||||||||||||||+|||+||++|++++
T Consensus        80 ~La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk  126 (126)
T 1tzy_B           80 RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (126)
T ss_dssp             HHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence            99999999999999999999999999999999999999999999985

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=100.00  E-value=6.9e-52  Score=339.54  Aligned_cols=126  Identities=76%  Similarity=1.005  Sum_probs=91.3

Q ss_pred             CCCCCCCcchhhhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q psy13072          1 MAAGKSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSR   80 (257)
Q Consensus         1 ~~~~~~~~~~~~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~   80 (257)
                      |+..+++..+.+|+++.+.++.+++..+++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~   80 (126)
T 1tzy_B            1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR   80 (126)
T ss_dssp             ---------------------------------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCccccchhhcccccccCCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55344555556667777666665555677788899999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCCC
Q psy13072         81 LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (257)
Q Consensus        81 L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~~  126 (257)
                      |++||+++|||+||||+||||||||||+||||+||++||++|++++
T Consensus        81 La~~nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ssk  126 (126)
T 1tzy_B           81 LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (126)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999999999999999999999999999863

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=100.00  E-value=9.9e-52  Score=337.41  Aligned_cols=102  Identities=94%  Similarity=1.246  Sum_probs=93.8

Q ss_pred             cccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072        156 KSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  235 (257)
Q Consensus       156 ~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLp  235 (257)
                      +++++++++++|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+|||||||
T Consensus        22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp  101 (123)
T 2nqb_D           22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP  101 (123)
T ss_dssp             -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred             CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhHHhhhhhhhhcccCCC
Q psy13072        236 GELAKHAVSEGTKAVTKYTSSK  257 (257)
Q Consensus       236 geLakhAv~eG~kAV~ky~ssk  257 (257)
                      ||||||||+|||+||++|++++
T Consensus       102 GELaKhAvseGtkAV~ky~ss~  123 (123)
T 2nqb_D          102 GELAKHAVSEGTKAVTKYTSSK  123 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999985

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=100.00  E-value=1.2e-50  Score=331.07  Aligned_cols=120  Identities=91%  Similarity=1.187  Sum_probs=93.3

Q ss_pred             CCCcchhhhhhcccccccccchhhcccccccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13072          5 KSSGKAVKKAGKAQKNIAKSDKKKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHY   84 (257)
Q Consensus         5 ~~~~~~~~k~~k~~~~~~~~~~~kk~~~k~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~   84 (257)
                      +++..+.+|+++.+.+..  +..+++++++.|+|++||||||||||||+|||++||+||||||||||||||.||++|++|
T Consensus         4 ~~~~~~~k~~~~~~~~~~--~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~   81 (123)
T 2nqb_D            4 KTSGKAAKKAGKAQKNIT--KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHY   81 (123)
T ss_dssp             ---------------------------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccccccccccC--CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555566666655442  334666788999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhhhccCCC
Q psy13072         85 NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  126 (257)
Q Consensus        85 ~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~ky~s~~  126 (257)
                      |+++|||+||||+||||||||||+||||+||++||++|++++
T Consensus        82 nkr~TitsreIqtAvrLlLpGELaKhAvseGtkAV~ky~ss~  123 (123)
T 2nqb_D           82 NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK  123 (123)
T ss_dssp             TTCCEECHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcCCHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCC
Confidence            999999999999999999999999999999999999999863

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=100.00  E-value=1.5e-42  Score=302.02  Aligned_cols=168  Identities=55%  Similarity=0.759  Sum_probs=149.5

Q ss_pred             ccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHH
Q psy13072         34 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS  113 (257)
Q Consensus        34 ~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~  113 (257)
                      +.|+|++||||||||||||++||++||++||+|++|+|+||+.||++|+++++++|||+||||+||+|+|||||+|||++
T Consensus         1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~   80 (192)
T 2jss_A            1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS   80 (192)
T ss_dssp             CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred             CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhH-HHHHHHhhhcCC-CCCcchHHH
Q psy13072        114 EGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYA-IYIYKVLKQVHP-DTGVSSKAM  191 (257)
Q Consensus       114 eG~kAV~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~-~YI~kVLKQVhp-d~~ISskAM  191 (257)
                      ||++||++|++++.          ..+  ...+++-                  .|. ..|+|.||.... ...|+..|.
T Consensus        81 eG~kAv~k~~~sk~----------~~s--~s~ragl------------------~fPv~ri~R~lk~~~~a~~Rv~~~A~  130 (192)
T 2jss_A           81 EGTRAVTKYSSSTQ----------AQS--SSARAGL------------------QFPVGRIKRYLKRHATGRTRVGSKAA  130 (192)
T ss_dssp             HHHHHHHHHHHHCS----------SSC--HHHHSSC------------------CSCHHHHHHHHHHTTCSSCCCCTTTH
T ss_pred             HHHHHHHhhccccc----------ccc--ccccCCC------------------cCCHHHHHHHHHhcCccccccccChH
Confidence            99999999987542          111  0112221                  121 259999998744 468999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        192 SIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       192 ~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .+|...+.++...|.+.|.+.++.+++.+|++++||.|++
T Consensus       131 vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~  170 (192)
T 2jss_A          131 IYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR  170 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=100.00  E-value=8.1e-36  Score=259.58  Aligned_cols=92  Identities=80%  Similarity=1.168  Sum_probs=89.5

Q ss_pred             CCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHh
Q psy13072        165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS  244 (257)
Q Consensus       165 ~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~  244 (257)
                      ++|+|++||||||||||||++||++||++||+|++|||||||.||++|+++++++|||+||||+||||+|||||+|||++
T Consensus         1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~   80 (192)
T 2jss_A            1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS   80 (192)
T ss_dssp             CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred             CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCC
Q psy13072        245 EGTKAVTKYTSS  256 (257)
Q Consensus       245 eG~kAV~ky~ss  256 (257)
                      ||++||++|+++
T Consensus        81 eG~kAv~k~~~s   92 (192)
T 2jss_A           81 EGTRAVTKYSSS   92 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc
Confidence            999999999653

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=99.53  E-value=1.1e-14  Score=109.17  Aligned_cols=66  Identities=18%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072        170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  235 (257)
Q Consensus       170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLp  235 (257)
                      ..+|+|++||+|||.+||.+|+.+|+.+++++++.|+.||..+|.+++|.||+++||+.|++.+|-
T Consensus         7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~   72 (76)
T 3b0c_W            7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK   72 (76)
T ss_dssp             HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999999999999999999999999999998873

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=99.52  E-value=2.1e-13  Score=115.29  Aligned_cols=141  Identities=17%  Similarity=0.304  Sum_probs=120.2

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhh
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT  120 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~  120 (257)
                      -|-|++|+.-|+..||..|-.-|...+..+.+-|+.+|..++...+|+||+..||..|+.-|--+            -|.
T Consensus         9 ~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~------------~v~   76 (154)
T 1f1e_A            9 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE------------GVE   76 (154)
T ss_dssp             HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT------------TST
T ss_pred             HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc------------cCC
Confidence            37899999989999999999999999999999999999999999999999999999998433222            111


Q ss_pred             hccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHH
Q psy13072        121 KYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND  200 (257)
Q Consensus       121 ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnD  200 (257)
                      ....-.                 .|+                        .=|.|++|+. ....||+.|...|..++.+
T Consensus        77 d~~~l~-----------------lP~------------------------a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~  114 (154)
T 1f1e_A           77 DYDGEL-----------------FGR------------------------ATVRRILKRA-GIERASSDAVDLYNKLICR  114 (154)
T ss_dssp             TCCSCC-----------------CCH------------------------HHHHHHHHHT-TCCEECHHHHHHHHHHHHH
T ss_pred             cccccc-----------------CCc------------------------cHHHHHHHHc-CCccchHHHHHHHHHHHHH
Confidence            111000                 001                        1288999998 7889999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc
Q psy13072        201 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  235 (257)
Q Consensus       201 iferIa~EAs~La~~~kr~Tit~reIqtAvrllLp  235 (257)
                      +.+.|+.+|..+|++.+|+||+++||+.|++..||
T Consensus       115 f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~  149 (154)
T 1f1e_A          115 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP  149 (154)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=99.49  E-value=4e-14  Score=106.16  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=62.8

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  104 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLp  104 (257)
                      .+|+|++||+|||..||.+|+.+|+.++.++++.|+.||..++..++++||+.+||+.|++.+|-
T Consensus         8 A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~   72 (76)
T 3b0c_W            8 GTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILK   72 (76)
T ss_dssp             HHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999998873

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.85  E-value=4.3e-09  Score=76.58  Aligned_cols=60  Identities=27%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |.|++|++ ++..||+.|+..|..++.++++.|+++|...+.+.+|.||+++|||.|++.|
T Consensus         8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A            8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            78999999 8999999999999999999999999999999999999999999999999865

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.71  E-value=2.1e-08  Score=72.88  Aligned_cols=60  Identities=27%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      |.|++|++ ++..||+.|+..|...+.++++.|+.+|..++.+.+|+||+.+|||.|++.|
T Consensus         8 v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A            8 IGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            78999999 8999999999999999999999999999999999999999999999999865

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=98.69  E-value=2.5e-07  Score=96.87  Aligned_cols=149  Identities=15%  Similarity=0.205  Sum_probs=120.9

Q ss_pred             cchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHh
Q psy13072         35 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  114 (257)
Q Consensus        35 ~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~e  114 (257)
                      ..-|-.-|+|||.||||+++|.-.|+.-+++++--++-.|+.          ....|..|+...|.-.+|++|.++|+.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (1049)
T 3ksy_A           20 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIAD   89 (1049)
T ss_dssp             SSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHH
Confidence            455778899999999999999999999999998777766653          4678899999999999999999999999


Q ss_pred             hhhhhhhccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHH
Q psy13072        115 GTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIM  194 (257)
Q Consensus       115 G~kAV~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~im  194 (257)
                      +-.++..-.+                     ++|-.=+.                 .-|+|.||.. ....|+..|.-+|
T Consensus        90 ~~~~~~~~~~---------------------~~~l~~pv-----------------~~~~~~l~~~-~~~r~~~~~~~y~  130 (1049)
T 3ksy_A           90 AQSAIEKRKR---------------------RNPLSLPV-----------------EKIHPLLKEV-LGYKIDHQVSVYI  130 (1049)
T ss_dssp             HHHHHTTCCC---------------------SSSCSSCH-----------------HHHHHHHHHH-HCSCCCHHHHHHH
T ss_pred             HHHhhhcccc---------------------cCCccccH-----------------HHHHHHhhcc-cccccCCCCcchh
Confidence            6544322111                     11111111                 1288888544 4569999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        195 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       195 nSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      ...+.++--.|.+-|++-++.+++..|++|+||.|++-
T Consensus       131 ~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~  168 (1049)
T 3ksy_A          131 VAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA  168 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence            99999999999999999999999999999999999974

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.44  E-value=2.9e-07  Score=77.73  Aligned_cols=63  Identities=19%  Similarity=0.362  Sum_probs=61.0

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCC
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP  104 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLp  104 (257)
                      -|.|++|+. ....||+.|...|..++.++.+.|+.+|..++++.+|+||+.+||+.|++..||
T Consensus        87 ~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~  149 (154)
T 1f1e_A           87 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMP  149 (154)
T ss_dssp             HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSG
T ss_pred             HHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCC
Confidence            489999998 778999999999999999999999999999999999999999999999999999

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=98.11  E-value=5.6e-06  Score=65.13  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .-.|.|+++.... ..||..|...|..++.++++.|+.+|..++++++|.||+++||+.|++-+
T Consensus        32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           32 KPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            3468999999877 68999999999999999999999999999999999999999999999965

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=98.09  E-value=6.5e-06  Score=64.71  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .-.|.|+++.... ..||..|...|..++.++++.|+.+|..++++++|.|||++||+.|++-+
T Consensus        32 ~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           32 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            3478999999877 68999999999999999999999999999999999999999999999965

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=97.94  E-value=1.8e-05  Score=57.72  Aligned_cols=59  Identities=17%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -|.|++|.. ....||+.+..-|..++.++++.|+.+|...+.+.+|.||+.+||+.|++
T Consensus        11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            478999987 47899999999999999999999999999999999999999999999985

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=97.91  E-value=2.7e-05  Score=61.14  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ..|.|+++..-. ..||..+...|..++.++++.|+.+|..++++.+|+|||.+||+.|++-+
T Consensus        33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            579999999877 68999999999999999999999999999999999999999999999965

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=97.91  E-value=2.3e-05  Score=63.77  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             hhH-HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~-~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|- ..|+|+|++...-..|+..|..+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus        23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   87 (123)
T 2nqb_C           23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR   87 (123)
T ss_dssp             SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence            454 4799999998666699999999999999999999999999999999999999999999999

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=97.90  E-value=2.4e-05  Score=61.53  Aligned_cols=62  Identities=15%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ..|.|+++..-. ..||..+...|..++.++++.|+.+|..++++.+|+||+.+||+.|++-+
T Consensus        33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            479999999877 68999999999999999999999999999999999999999999999965

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=97.89  E-value=2.3e-05  Score=63.52  Aligned_cols=64  Identities=22%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. .|+|.|+....-..|+..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus        22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~   86 (120)
T 2f8n_G           22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   86 (120)
T ss_dssp             SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            3443 799999998777799999999999999999999999999999999999999999999999

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=97.85  E-value=3.1e-05  Score=63.54  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. .|+|+|+....-..||..|-.+|...+.++...|.+.|.+.++.+++.+|++++||.||+
T Consensus        25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~   89 (129)
T 1tzy_A           25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (129)
T ss_dssp             SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            3443 799999997666699999999999999999999999999999999999999999999999

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.85  E-value=2.6e-05  Score=64.09  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. .|+|+|+....-..|+..|..+|...+.++...|.+.|.+.++.+++.+|++|+||.||+
T Consensus        25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~   89 (131)
T 1id3_C           25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR   89 (131)
T ss_dssp             SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence            4544 799999997556699999999999999999999999999999999999999999999999

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=97.80  E-value=3.7e-05  Score=64.59  Aligned_cols=64  Identities=19%  Similarity=0.296  Sum_probs=59.3

Q ss_pred             hhHH-HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. .|+|+||....-..|+..|-.+|...+.++...|.+.|.+.|+.+++.+|++|+||.||+
T Consensus        44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~  108 (149)
T 2f8n_K           44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR  108 (149)
T ss_dssp             SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence            3443 799999998666799999999999999999999999999999999999999999999999

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=97.78  E-value=3e-05  Score=63.48  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=58.5

Q ss_pred             hhHH-HHHHHhhhcCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        168 SYAI-YIYKVLKQVHP-DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       168 sy~~-YI~kVLKQVhp-d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|-. .|+|.|+.... ...|+..|-.+|...+.++...|.+.|.+.++.+++.+|++|+||.||+
T Consensus        27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~   92 (128)
T 1f66_C           27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   92 (128)
T ss_dssp             SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence            4544 79999998864 3589999999999999999999999999999999999999999999998

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=97.74  E-value=5.9e-05  Score=55.00  Aligned_cols=59  Identities=17%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      -|.|++|.. ....||..+...|.-++.++++.|+.+|..++.+.+|+||+.+||+.|++
T Consensus        11 ~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A           11 PVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            578899987 57899999999999999999999999999999999999999999999975

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.70  E-value=7.6e-05  Score=58.73  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        170 AIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       170 ~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .-.|.|+++..-+ ..||..+...|..++.++++.|+.||..++++.+|.|||..||..|++.+
T Consensus        31 ~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           31 KPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             HHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            3468899998754 77999999999999999999999999999999999999999999999864

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.65  E-value=0.00015  Score=55.63  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=56.8

Q ss_pred             HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      =|.|+.|..-|| ..||..|...|.-....+...|+.+|...|...+|.||+..||+.|++
T Consensus        13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A           13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            388999999775 789999999999999999999999999999999999999999999998

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00092  Score=59.82  Aligned_cols=187  Identities=19%  Similarity=0.319  Sum_probs=113.9

Q ss_pred             ccchhHHHHHHHhhhhCC---CCCcchHHHHHHHH----HHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh----
Q psy13072         34 RKESYAIYIYKVLKQVHP---DTGVSSKAMSIMNS----FVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL----  102 (257)
Q Consensus        34 ~~esy~~yI~KVLKqVhp---d~~ISskam~imnS----fv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll----  102 (257)
                      ++-.|+..+..+..+..+   |+-+.+.|+.-|--    |+-.+||    .+.-.+.+.+|-||.++|||-|-|+-    
T Consensus        13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFE----d~nLcaiHAkRVTim~kDiqLarrirg~~~   88 (235)
T 2l5a_A           13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLE----HTNLLALHAKRITIMKKDMQLARRIRGQFL   88 (235)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHSTTTSGGGTTHHHHHHTSSCSCC
T ss_pred             cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHh----hhHHHHhcccccccchhhHHHHHHHhhccC
Confidence            466788888888777665   78999999976644    5555555    45566778899999999999999963    


Q ss_pred             CChhH-HHhHH-Hhhhhh-----hhhccCCCCCcchhhhhccCCcchhhhhhcccccccc-cccccccccCCchhHHHHH
Q psy13072        103 LPGEL-AKHAV-SEGTKA-----VTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIA-KSDKKKKHRRKESYAIYIY  174 (257)
Q Consensus       103 LpGeL-aKhAv-~eG~kA-----V~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~-~~~kk~~~~~~esy~~YI~  174 (257)
                      .|-|+ .+|+- .+-+|.     ..+|.+...-+-+-++.    +|.-....|-- .+-. ++.-   +-..+.|..-+.
T Consensus        89 ~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~----tG~iv~dnGh~-~~l~~~~~~---~~~~~r~~~vLr  160 (235)
T 2l5a_A           89 VPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLK----TGEIVEDNGHI-KTLTANNST---KDKRTKYTSVLR  160 (235)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSS----SCCCCCCCCCC-CSCCCCCGG---GCCSSTHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCC----CCceeeeCcHH-HHhhcCCCC---CccchhHHHHHH
Confidence            23221 12221 122222     23666532211111111    11111111100 0000 0000   001133444433


Q ss_pred             HHhhhcC-----C---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        175 KVLKQVH-----P---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       175 kVLKQVh-----p---d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      -++. +-     .   =-.||..+..-+...+.++++.|+.+|..++.+.+|+|+|+.||-.|++..
T Consensus       161 D~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~  226 (235)
T 2l5a_A          161 DIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ  226 (235)
T ss_dssp             HHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             Hhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence            3332 21     1   135899999999999999999999999999999999999999999999854

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=97.54  E-value=0.00012  Score=55.53  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=56.7

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      -.|.|+.+.... ..||..+..-|..++.+.++.|+.+|..++++.+|+||+..||..|++-+
T Consensus        14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            358899998754 77999999999999999999999999999999999999999999998854

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.50  E-value=0.0002  Score=56.27  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ..|.|+++..-+ ..||..+...|..++.++++.|+.||..++++.+|+|||..||..|++-+
T Consensus        32 ~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           32 PAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            478999998754 67999999999999999999999999999999999999999999999865

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=97.43  E-value=0.00028  Score=56.27  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      ..|.|+.+.. ....||..+...|..++.++++.|+.+|..++.+.+|+||+..||..|++-
T Consensus        11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            4578888776 688999999999999999999999999999999999999999999999885

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.42  E-value=0.00047  Score=52.79  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=56.5

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      -|.|+.|..-|| ..||..|...|.-....+...|+.+|...+...+|+||+..||+.|++
T Consensus        13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A           13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            488999999775 789999999999999999999999999999999999999999999998

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.37  E-value=0.00044  Score=53.55  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      |.|++|.- || ..||..|-.+|.-....+.+.|+++|...+..++|.||+.+||+.||+-
T Consensus        25 IkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~   84 (97)
T 1n1j_B           25 IKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   84 (97)
T ss_dssp             HHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence            88999976 77 5599999999999999999999999999999999999999999999863

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.36  E-value=0.00053  Score=59.10  Aligned_cols=62  Identities=19%  Similarity=0.371  Sum_probs=58.8

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      =|.|++|.+-|+..||..|...|.-.+..+..-|+.+|..+|...+|+||+..||..|+.-+
T Consensus        20 ~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L   81 (179)
T 1jfi_B           20 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   81 (179)
T ss_dssp             HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence            48899999999999999999999999999999999999999999999999999999998743

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=97.33  E-value=0.0003  Score=53.28  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ..|.|+.+..-. ..||..+...|..++.++++.|+.||..++.+.+|+||+..||..|++-+
T Consensus        14 ~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C           14 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            368899998855 67999999999999999999999999999999999999999999998754

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=97.30  E-value=0.00044  Score=55.61  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=54.1

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      |.|++|.. || ..||..|..+|.-....+...|+++|...|..++|.||+.+||+.||+
T Consensus        47 IkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           47 IKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             HHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence            88999976 55 569999999999999999999999999999999999999999999996

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=97.28  E-value=0.0005  Score=54.81  Aligned_cols=61  Identities=16%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      ..|.|+.+.. ....||..+...|..++.++++.|+.+|..++.+.+|+||+..||..|++-
T Consensus        11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr   71 (111)
T 3b0c_T           11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRR   71 (111)
T ss_dssp             HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            4688888877 678999999999999999999999999999999999999999999999885

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.28  E-value=0.00076  Score=58.14  Aligned_cols=64  Identities=19%  Similarity=0.332  Sum_probs=59.6

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhC
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  103 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllL  103 (257)
                      .=|.|++|++-|+..||..|...|.-.+..+..-|+.||..++...+|+||+..||..|+.-+-
T Consensus        19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg   82 (179)
T 1jfi_B           19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG   82 (179)
T ss_dssp             HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence            3589999999999999999999999999999999999999999999999999999999998543

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.24  E-value=0.0008  Score=54.87  Aligned_cols=61  Identities=25%  Similarity=0.341  Sum_probs=57.2

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |.|++|++-|| ..||..|...|.-...-+...|+.+|..++...+|+||+..||..|+.-+
T Consensus        15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l   76 (128)
T 2byk_B           15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   76 (128)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence            88999988775 67999999999999999999999999999999999999999999999864

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.21  E-value=0.00061  Score=55.92  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=61.8

Q ss_pred             chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHH
Q psy13072         36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELA  108 (257)
Q Consensus        36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLa  108 (257)
                      -.|. ..|+|+|++..--..|+..|...|...+.++...|.+.|.+.++.+++.+|++|+||.|++  -..||-
T Consensus        24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~--nDeEL~   95 (131)
T 1id3_C           24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR--NDDELN   95 (131)
T ss_dssp             CSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TCHHHH
T ss_pred             eecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh--ccHHHH
Confidence            3565 4899999997555689999999999999999999999999999999999999999999999  455553

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=97.19  E-value=0.0012  Score=49.74  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             hhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       168 sy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|..-+..+.....+|..+++.|+.-|.-...+....+.++|..++.+.+|.||.++|||.|.|+
T Consensus         8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri   72 (77)
T 2hue_B            8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI   72 (77)
T ss_dssp             HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence            35555555555556789999999999999999999999999999999999999999999999986

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.16  E-value=0.00039  Score=54.07  Aligned_cols=59  Identities=12%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             HHHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      =|.|++|. .|| ..||..|--+|.-....+.+.|+++|.+.++.++|.||+.+||+.||+
T Consensus        16 RIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           16 RIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             HHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             HHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            38899996 566 679999999999999999999999999999999999999999999986

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=97.14  E-value=0.0013  Score=48.67  Aligned_cols=60  Identities=15%  Similarity=0.279  Sum_probs=53.4

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|.++.+++.- ..+|..+-..|-.-+.+....|+.||.++++..+|.|||..||..|+++
T Consensus        11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            46777777753 4789999999999999999999999999999999999999999999864

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=97.10  E-value=0.0011  Score=53.74  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      -.|. ..|+|+|++..--..|+..|...|...+..+...|.+.|.+.++.+++.+|++++||.|++  -..||
T Consensus        22 L~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~--nDeEL   92 (123)
T 2nqb_C           22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEEL   92 (123)
T ss_dssp             CSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred             eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh--ccHHH
Confidence            3555 4899999998555689999999999999999999999999999999999999999999999  45555

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=97.07  E-value=0.0011  Score=53.56  Aligned_cols=70  Identities=23%  Similarity=0.242  Sum_probs=61.7

Q ss_pred             chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      -.|. ..|+|+|+.......|+..|-..|...+..+...|.+.|.+.++.+++.+|++++||.|++  -..||
T Consensus        21 LqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~--nDeEL   91 (120)
T 2f8n_G           21 VIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA--NDEEL   91 (120)
T ss_dssp             CSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred             ccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh--cCHHH
Confidence            3455 4899999998766789999999999999999999999999999999999999999999999  44455

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.05  E-value=0.0017  Score=52.89  Aligned_cols=65  Identities=23%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  105 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG  105 (257)
                      -|.|++|++-|| ..||..|...|.-....+...|+.+|..++...+|+||+..||..|+.-+-=.
T Consensus        14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~   79 (128)
T 2byk_B           14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE   79 (128)
T ss_dssp             HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence            488999988775 68999999999999999999999999999999999999999999999875433

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=97.03  E-value=0.0018  Score=49.37  Aligned_cols=65  Identities=12%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             hHHHHHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        169 YAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       169 y~~YI~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |..-+..+-.+..  .|..+++.|+.-|---..+..-.+.++|.-+|.+.+|.||.++|||.|.|+-
T Consensus         9 F~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir   75 (82)
T 3nqj_A            9 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR   75 (82)
T ss_dssp             HHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence            4444444444433  4789999999999999999999999999999999999999999999999973

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=97.02  E-value=0.0014  Score=53.63  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=61.5

Q ss_pred             chhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         36 ESYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        36 esy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      -.|. ..|+|+|++..--..|+..|...|...+..+...|.+.|.+.++.+++.+|++++||.|++  -..||
T Consensus        24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~--nDeEL   94 (129)
T 1tzy_A           24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR--NDEEL   94 (129)
T ss_dssp             CSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--TSHHH
T ss_pred             eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh--ccHHH
Confidence            3455 4899999997555699999999999999999999999999999999999999999999999  44555

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=96.94  E-value=0.003  Score=47.49  Aligned_cols=59  Identities=17%  Similarity=0.406  Sum_probs=55.8

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      +...++||-|...|...+.+.|-.+.+|+.+.+++.|++||.+.+-.||..+|||....
T Consensus        11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B           11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            66889999999999999999999999999999999999999999999999999997654

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=96.92  E-value=0.0018  Score=54.38  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             hhH-HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         37 SYA-IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        37 sy~-~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      .|. ..|+|+|++..--..|+..|...|...+.++...|.+.|.+.++.+++.+|++|+||.|++  -..||
T Consensus        44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~--nDeEL  113 (149)
T 2f8n_K           44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR--NDEEL  113 (149)
T ss_dssp             SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH--HSHHH
T ss_pred             eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh--ccHHH
Confidence            455 4899999998666689999999999999999999999999999999999999999999999  34455

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.91  E-value=0.0044  Score=45.54  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=56.1

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhc
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  234 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllL  234 (257)
                      .-|.++||...- ...|..+...|.-|+......|+.+|..++.+.+|.||+..||..|+...+
T Consensus         5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~   67 (68)
T 1taf_A            5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL   67 (68)
T ss_dssp             HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence            457888987543 477999999999999999999999999999999999999999999998654

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=96.87  E-value=0.0023  Score=49.53  Aligned_cols=59  Identities=20%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      =|.|++|.- || ..||..|.-.|.-..-.+...|+.+|...+..++|+||+.+||+.||+
T Consensus        24 rIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~   83 (97)
T 1n1j_B           24 RIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT   83 (97)
T ss_dssp             HHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence            488999986 77 569999999988888888899999999999999999999999999986

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=96.85  E-value=0.0019  Score=51.91  Aligned_cols=60  Identities=22%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      =|.|++|.......||..|.-+|.-..--+...|+.+|...+..++|+||+.+||+.||+
T Consensus        46 RIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~  105 (119)
T 4g92_C           46 RIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS  105 (119)
T ss_dssp             HHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             HHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence            489999976444678999998888888888899999999999999999999999999996

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=96.76  E-value=0.0028  Score=51.77  Aligned_cols=73  Identities=19%  Similarity=0.150  Sum_probs=61.9

Q ss_pred             cchhH-HHHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072         35 KESYA-IYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  109 (257)
Q Consensus        35 ~esy~-~yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK  109 (257)
                      .-.|- ..|+|+|+..... ..|+..|...|-..+..+...|.+.|...++.+++.+|++|+||-|++  -..||-.
T Consensus        25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~--nDeEL~~   99 (128)
T 1f66_C           25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDS   99 (128)
T ss_dssp             TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH--HSHHHHH
T ss_pred             CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh--ccHHHhh
Confidence            34555 4899999998643 479999999999999999999999999999999999999999999999  4555533

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=96.76  E-value=0.0044  Score=46.53  Aligned_cols=59  Identities=17%  Similarity=0.406  Sum_probs=55.3

Q ss_pred             HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      +..+++||-|...+...+-+.|--+..|+.+.++..|++||.+.+..||..+|||....
T Consensus        11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   69 (76)
T 1h3o_B           11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   69 (76)
T ss_dssp             HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999997664

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=96.76  E-value=0.0042  Score=51.38  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             hhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        168 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       168 sy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|..-+..+.....+|..+++.|+..|.-...+.+..+.+++..++.+.+|.||.++|||.|.|+
T Consensus        67 PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri  131 (136)
T 1tzy_C           67 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence            45555555555556799999999999999999999999999999999999999999999999986

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=96.75  E-value=0.0033  Score=49.50  Aligned_cols=66  Identities=21%  Similarity=0.212  Sum_probs=55.0

Q ss_pred             chhHHHHHHHhhhcCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        167 ESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       167 esy~~YI~kVLKQVhp---d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      -.|..-+..+..+..+   |..+++.|+.-|.-...+..-.+.++|..+|.+.+|.||.++|||.|.|+
T Consensus        31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri   99 (100)
T 2yfv_A           31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI   99 (100)
T ss_dssp             HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence            3455555555555555   78999999999999999999999999999999999999999999999885

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.65  E-value=0.0057  Score=45.22  Aligned_cols=60  Identities=15%  Similarity=0.279  Sum_probs=52.5

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .|.++.+++-= ..+|..+-..|-.-+.+....|+.||.+++++.+|+|||..||-.|+++
T Consensus        11 ~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~   70 (70)
T 1taf_B           11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence            46777777643 4789999999999999999999999999999999999999999999864

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=96.60  E-value=0.0042  Score=51.62  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             hhHHHHHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        168 SYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       168 sy~~YI~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      -|..-|..+..+..  .|..+++.|+..|--...+.+-.|.++|.-+|.+.+|.||.++|||.|.|+-
T Consensus        66 PF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir  133 (140)
T 3nqu_A           66 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  133 (140)
T ss_dssp             HHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence            34444444443333  4788999999999999999999999999999999999999999999999973

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.0052  Score=47.47  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             HHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      +-++..++-+  +..+|..++.-|.-++.+.++.|+.++..+|...+|+||+..||..++|-
T Consensus        18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr   79 (90)
T 3v9r_A           18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK   79 (90)
T ss_dssp             HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            4455566644  36699999999999999999999999999999999999999999998873

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=96.56  E-value=0.0039  Score=52.70  Aligned_cols=52  Identities=15%  Similarity=0.191  Sum_probs=48.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        182 PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       182 pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .|..+++.|+..|--...+.+-.|.++|.-+|...+|.||.++|||.|.||-
T Consensus        98 ~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr  149 (156)
T 3r45_A           98 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  149 (156)
T ss_dssp             CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence            3678999999999999999999999999999999999999999999999973

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=96.53  E-value=0.009  Score=44.92  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             hhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         37 SYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        37 sy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      .|+.-+..+..+..+|..+++.|+..|.-..-++...+.+++..++.+.+|.||.++|||-|.|+
T Consensus         8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri   72 (77)
T 2hue_B            8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI   72 (77)
T ss_dssp             HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence            45555666666667789999999998888888888888899999999999999999999999986

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.46  E-value=0.014  Score=42.83  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhC
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  103 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllL  103 (257)
                      .-|.++||...- ...|..+...|--|+......|+.+|..++.+.+++||+..||.-|+...+
T Consensus         5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~   67 (68)
T 1taf_A            5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL   67 (68)
T ss_dssp             HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence            457888888533 467999999999999999999999999999999999999999999998654

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=96.44  E-value=0.0031  Score=50.14  Aligned_cols=61  Identities=21%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             HHHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        172 YIYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       172 YI~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .|-|+++.+-.  +..+|..++..|.-|+.+.++.|+.+|..++.+.+|+||+..||..|+|-
T Consensus        24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr   86 (107)
T 3b0b_B           24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR   86 (107)
T ss_dssp             HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence            35566766633  57899999999999999999999999999999999999999999999884

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=96.41  E-value=0.0044  Score=49.85  Aligned_cols=60  Identities=17%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             HHHHhhhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhp--d~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      |-|+++++-.  +..+|..++.-|.-++.+.++.|+.++..+|...+|+||+..||..++|-
T Consensus        33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr   94 (113)
T 4dra_A           33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR   94 (113)
T ss_dssp             HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence            5677776643  57799999999999999999999999999999999999999999999873

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=96.41  E-value=0.0031  Score=48.98  Aligned_cols=60  Identities=12%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             HHHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         40 IYIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        40 ~yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      .=|.|++|. .|| ..||..|.-.|.-..-.+.+.|+.+|...++.++++||+.+||+.||+
T Consensus        15 aRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~   75 (98)
T 1jfi_A           15 ARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   75 (98)
T ss_dssp             HHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             HHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence            358999997 566 678999999888888888899999999999999999999999999886

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=96.14  E-value=0.01  Score=49.07  Aligned_cols=58  Identities=10%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             HHHHhhhcCCCC-CcchHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd~-~ISskAM~imnSfvnDiferIa~EAs~La-~~~kr~Tit~reIqtAvr  231 (257)
                      |.|++|.- |+. .||..|.-+|.-...-+...|+.+|...+ ..++|.||+.++|..||.
T Consensus        25 IKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~   84 (140)
T 2byk_A           25 VRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   84 (140)
T ss_dssp             ----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             HHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence            88889875 774 58999999999999999999999999999 999999999999999997

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=96.14  E-value=0.016  Score=44.08  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=54.0

Q ss_pred             hhHHHHHHHhhhhC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         37 SYAIYIYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        37 sy~~yI~KVLKqVh--pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      .|+.-|..+-.+..  .|..+++.|+..|---.-++.-.+.++|.-++.+.+|.||.++|||-|.|+-
T Consensus         8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rir   75 (82)
T 3nqj_A            8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR   75 (82)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHc
Confidence            35554555554444  4788999999999888888888888899999999999999999999999974

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=96.14  E-value=0.0069  Score=50.35  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             HHHHhhhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVh--pd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      |-++.+++-  .++.+|..++.-|.-++.+.++.|+.++..+|++.+|.||+..||..++|-
T Consensus        25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr   86 (140)
T 3vh5_A           25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR   86 (140)
T ss_dssp             HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            445555552  357899999999999999999999999999999999999999999999884

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=96.07  E-value=0.016  Score=60.77  Aligned_cols=74  Identities=16%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             chhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhhh
Q psy13072        167 ESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEG  246 (257)
Q Consensus       167 esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~eG  246 (257)
                      .-|-.-|+|||.||||++.|.-.|+..+++++-.++-.|+.          ...-|..|+...|.-.+|++|.++|+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (1049)
T 3ksy_A           21 GLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ----------AQPRSASDVEERVQKSFPHPIDKWAIADA   90 (1049)
T ss_dssp             SSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH----------TCCCSHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc----------CCCccHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34777899999999999999999999999999888877764          45678899999999999999999999998


Q ss_pred             hhhh
Q psy13072        247 TKAV  250 (257)
Q Consensus       247 ~kAV  250 (257)
                      -.++
T Consensus        91 ~~~~   94 (1049)
T 3ksy_A           91 QSAI   94 (1049)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6664

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.013  Score=45.26  Aligned_cols=59  Identities=12%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      +-++..++-+  +..+|..++..|--++.+.++.|+.++..++++.+|+||+..||..++|
T Consensus        18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R   78 (90)
T 3v9r_A           18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR   78 (90)
T ss_dssp             HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            3455556644  3668999999999999999999999999999999999999999988876

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=95.91  E-value=0.023  Score=46.91  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             hHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         38 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        38 y~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      |+..|..+..+..+|.-+++.|+..|--...++...+.+++..++.+.++.||..+|||-|.++
T Consensus        68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri  131 (136)
T 1tzy_C           68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI  131 (136)
T ss_dssp             HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHH
Confidence            4555555555556899999999998888888888888889999999999999999999999986

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=95.89  E-value=0.0079  Score=47.82  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      |-|+++.+--  +..+|..++..|.-|+.++++.|+.++..++.+.+|+||+..||..|+|-
T Consensus        25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr   86 (107)
T 3b0b_B           25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR   86 (107)
T ss_dssp             HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence            5566666633  56899999999999999999999999999999999999999999988874

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=95.84  E-value=0.011  Score=47.63  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             HHHHhhhhCC--CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQVHP--DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqVhp--d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      |-|+++++-.  +..+|..++..|.-++.+.++.|+.++..++...+|+||+..||..++|
T Consensus        33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R   93 (113)
T 4dra_A           33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR   93 (113)
T ss_dssp             HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence            5577776643  5679999999999999999999999999999999999999999988887

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.017  Score=46.92  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        185 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       185 ~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .||..+..-+...++++++.|+.+|..++.+.+|+|+|..||-.|++.
T Consensus        64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr  111 (121)
T 2ly8_A           64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  111 (121)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            467777888888999999999999999999999999999999999874

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=95.72  E-value=0.026  Score=44.33  Aligned_cols=66  Identities=21%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             chhHHHHHHHhhhhCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         36 ESYAIYIYKVLKQVHP---DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        36 esy~~yI~KVLKqVhp---d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -.|+.-+..+..+..+   |..+++.|+..|--..-++.-.+.++|.-++.+.+|.||..+|||-|.|+
T Consensus        31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri   99 (100)
T 2yfv_A           31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI   99 (100)
T ss_dssp             HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence            3456656666655555   78999999998888888888888888999999999999999999999875

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=95.52  E-value=0.016  Score=48.16  Aligned_cols=59  Identities=22%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             HHHhhhhC--CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         43 YKVLKQVH--PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        43 ~KVLKqVh--pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -++.+++-  .++.+|..++..|.-++.++++.|+.++..++++.+|+||+..||..++|-
T Consensus        26 gkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr   86 (140)
T 3vh5_A           26 GALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR   86 (140)
T ss_dssp             HHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            34555442  357899999999999999999999999999999999999999999998883

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.024  Score=45.99  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         53 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        53 ~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -.||..+..-+...+.++++.|+.+|..++.+.+|+|+|..||.-|++.
T Consensus        63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr  111 (121)
T 2ly8_A           63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  111 (121)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999999999874

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=95.33  E-value=0.034  Score=46.21  Aligned_cols=52  Identities=15%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         51 PDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        51 pd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      .|.-+++.|+..|--..-++.-.+.++|.-++.+.++.||..+|||-|.++-
T Consensus        82 ~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrir  133 (140)
T 3nqu_A           82 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  133 (140)
T ss_dssp             CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhc
Confidence            3678999999988888888888888899999999999999999999999974

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=95.24  E-value=0.031  Score=46.14  Aligned_cols=59  Identities=8%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             HHHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~-~~~kk~TltsreIqtAvr  100 (257)
                      =|.|++|.- || ..||..|.-+|.-..--+...|+.+|...+ ..++++||+.++|..||.
T Consensus        24 RIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~   84 (140)
T 2byk_A           24 RVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   84 (140)
T ss_dssp             -----CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             HHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence            588899886 77 467888888877777777788999999999 999999999999999997

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=95.02  E-value=0.062  Score=45.34  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=45.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         52 DTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        52 d~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      |+-+++.|+..|--..-+++..|.++|.-++.+.++.||..+|||-|.||-
T Consensus        99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr  149 (156)
T 3r45_A           99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR  149 (156)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred             cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence            678899999988888888888888889999999999999999999999973

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=93.79  E-value=0.11  Score=46.48  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         53 TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        53 ~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      -.||..+..-+...+.++.+.|+.+|..++.+.+|+|+|+.||.-|++..
T Consensus       177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~  226 (235)
T 2l5a_A          177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ  226 (235)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999999998854

>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*

Probab=86.35  E-value=2.8  Score=31.88  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhc-CCcccChhHHHHHHHHhc
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYN-KRSTITSREIQTAVRLLL  234 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~-kr~Tit~reIqtAvrllL  234 (257)
                      |.|+..++. +.++|.....+|..+-.-+.-.|.++|..+.... ....|.+++|..|+|.+-
T Consensus        22 vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~   83 (89)
T 1bh9_B           22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK   83 (89)
T ss_dssp             HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence            566677775 7889998888998888888899999999888765 455999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	5e-51
d1tzyb_	92	a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus)	5e-51
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	5e-23
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	8e-21
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	4e-21
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	1e-18

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  159 bits (405), Expect = 5e-51
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 34  RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 93
           RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1   RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60

Query: 94  EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
           EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61  EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 92

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  159 bits (405), Expect = 5e-51
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSR 224
           RKESY+IY+YKVLKQVHPDTG+SSKAM IMNSFVNDIFERIA E+SRLAHYNKRSTITSR
Sbjct: 1   RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR 60

Query: 225 EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 256
           EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Sbjct: 61  EIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 92

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (224), Expect = 5e-23
 Identities = 27/205 (13%), Positives = 65/205 (31%), Gaps = 49/205 (23%)

Query: 27  KKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNK 86
            ++   + +      + KV  QVHP    +  A+  +   +  +   +     R      
Sbjct: 7   SEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------ 60

Query: 87  RSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKK 146
               ++ +++  V+   P  + K A+++   A+ K    + NPL   +            
Sbjct: 61  ----SASDVEERVQKSFPHPIDKWAIADAQSAIEKRK--RRNPLSLPVE----------- 103

Query: 147 AGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIA 206
                                     I+ +LK+V     +  +    + + +  I   I 
Sbjct: 104 -------------------------KIHPLLKEVLGYK-IDHQVSVYIVAVLEYISADIL 137

Query: 207 AESSRLAHYNKRSTITSREIQTAVR 231
             +       +   IT ++I+ A+ 
Sbjct: 138 KLAGNYVRNIRHYEITKQDIKVAMC 162

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (209), Expect = 8e-21
 Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 159 KKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKR 218
           ++   + +      + KV  QVHP    +  A+  +   +  +   +     R       
Sbjct: 8   EENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPR------- 60

Query: 219 STITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 255
              ++ +++  V+   P  + K A+++   A+ K   
Sbjct: 61  ---SASDVEERVQKSFPHPIDKWAIADAQSAIEKRKR 94

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 84.5 bits (209), Expect = 4e-21
 Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 56/199 (28%)

Query: 42  IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 101
           I ++ +Q   +  +S  A   +  FV  + E +A  +  +   + + T+    ++    +
Sbjct: 7   IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66

Query: 102 LLPGELAKHAVSEGTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKK 161
           L+   +  +      +A                                 + I K    +
Sbjct: 67  LMVEGVEDYDGELFGRATV-------------------------------RRILKRAGIE 95

Query: 162 KHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTI 221
           +                        SS A+ + N  +    E +  +++  A  + R T+
Sbjct: 96  R-----------------------ASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTV 132

Query: 222 TSREIQTAVRLLLP--GEL 238
              +++ A+   +P  GEL
Sbjct: 133 QGEDVEKAITYSMPKGGEL 151

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 11/80 (13%), Positives = 32/80 (40%)

Query: 173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL 232
           I ++ +Q   +  +S  A   +  FV  + E +A  +  +   + + T+    ++    +
Sbjct: 7   IERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 66

Query: 233 LLPGELAKHAVSEGTKAVTK 252
           L+   +  +      +A  +
Sbjct: 67  LMVEGVEDYDGELFGRATVR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	100.0
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	100.0
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.93
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.91
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.65
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.61
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.09
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	97.97
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	97.84
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	97.7
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	97.54
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	97.53
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	97.45
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	97.43
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	97.42
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.32
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.27
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.22
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.19
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	97.19
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	97.16
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	97.11
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	97.06
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	97.05
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	96.89
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	96.79
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	96.55
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	96.37
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	96.32
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	95.51
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	95.32
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	94.5
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	93.92
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	92.36
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	92.28
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	87.08
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	84.6
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	82.57
d1bh9b_	89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	81.56

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=3.8e-50  Score=312.50  Aligned_cols=92  Identities=93%  Similarity=1.267  Sum_probs=90.6

Q ss_pred             CCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHh
Q psy13072        165 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS  244 (257)
Q Consensus       165 ~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~  244 (257)
                      |+|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+|+|||+||||+||||+||||||||||+
T Consensus         1 R~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvs   80 (92)
T d1tzyb_           1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS   80 (92)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCC
Q psy13072        245 EGTKAVTKYTSS  256 (257)
Q Consensus       245 eG~kAV~ky~ss  256 (257)
                      ||+|||++|++|
T Consensus        81 eGtkAv~ky~ss   92 (92)
T d1tzyb_          81 EGTKAVTKYTSS   92 (92)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhccC
Confidence            999999999986

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=2.4e-48  Score=302.33  Aligned_cols=92  Identities=93%  Similarity=1.267  Sum_probs=90.3

Q ss_pred             ccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHH
Q psy13072         34 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS  113 (257)
Q Consensus        34 ~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~  113 (257)
                      |.|+|++||||||||||||+|||++||+||||||||||||||.||++|++||+++|||+||||+||||+|||||+||||+
T Consensus         1 R~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~LPgeLaKhAvs   80 (92)
T d1tzyb_           1 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS   80 (92)
T ss_dssp             CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHCcHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCC
Q psy13072        114 EGTKAVTKYTSS  125 (257)
Q Consensus       114 eG~kAV~ky~s~  125 (257)
                      ||+|||++|+++
T Consensus        81 eGtkAv~ky~ss   92 (92)
T d1tzyb_          81 EGTKAVTKYTSS   92 (92)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhccC
Confidence            999999999875

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.93  E-value=4.2e-26  Score=189.52  Aligned_cols=144  Identities=17%  Similarity=0.280  Sum_probs=130.7

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHhhhhhhh
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT  120 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~eG~kAV~  120 (257)
                      -|+|||||++|+.+||..||.+|++|++|+|++|+.||..|+.+++|+||+++||+.|++++++|++.+|+         
T Consensus         6 ~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~---------   76 (151)
T d1f1ea_           6 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYD---------   76 (151)
T ss_dssp             HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCC---------
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccc---------
Confidence            48999999999999999999999999999999999999999999999999999999999999999987662         


Q ss_pred             hccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHH
Q psy13072        121 KYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVND  200 (257)
Q Consensus       121 ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnD  200 (257)
                         ....                                         ...+|.|++|... ...||+.|...|...+.+
T Consensus        77 ---~~~f-----------------------------------------p~a~IkRi~k~~g-~~ris~dA~~~l~~~~E~  111 (151)
T d1f1ea_          77 ---GELF-----------------------------------------GRATVRRILKRAG-IERASSDAVDLYNKLICR  111 (151)
T ss_dssp             ---SCCC-----------------------------------------CHHHHHHHHHHTT-CCEECHHHHHHHHHHHHH
T ss_pred             ---cCcc-----------------------------------------CHHHHHHHHHcCC-cchhhHHHHHHHHHHHHH
Confidence               0000                                         1145889998643 567999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcc--hHH
Q psy13072        201 IFERIAAESSRLAHYNKRSTITSREIQTAVRLLLP--GEL  238 (257)
Q Consensus       201 iferIa~EAs~La~~~kr~Tit~reIqtAvrllLp--geL  238 (257)
                      ++..|+.+|...|.+++|.||+++||+.||+..+|  |||
T Consensus       112 fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~~~~~~~~~  151 (151)
T d1f1ea_         112 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPKGGEL  151 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGGGGCC
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHcCCCcCCC
Confidence            99999999999999999999999999999999999  886

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.2e-24  Score=180.54  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=128.0

Q ss_pred             cchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHHhHHHh
Q psy13072         35 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  114 (257)
Q Consensus        35 ~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaKhAv~e  114 (257)
                      +..|-.||+|||+||||+++|+..||..||+|++++|++|+          ...+.|.+||+.+|+++|||+|.+||+.+
T Consensus        15 ~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L~----------~~~p~sv~dVe~~v~~~fp~~i~~~ai~~   84 (172)
T d1q9ca_          15 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLC----------QAQPRSASDVEERVQKSFPHPIDKWAIAD   84 (172)
T ss_dssp             TTSSHHHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHHH----------TTCCCSTTHHHHHHHHSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH----------ccCCccHHHHHHHHHHhCCchHHHHHHHH
Confidence            56899999999999999999999999999999999999995          36788999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCcchhhhhccCCcchhhhhhcccccccccccccccccCCchhHHHHHHHhhhcCCCCCcchHHHHHH
Q psy13072        115 GTKAVTKYTSSKSNPLQFIMAAGKSSGKAVKKAGKAQKNIAKSDKKKKHRRKESYAIYIYKVLKQVHPDTGVSSKAMSIM  194 (257)
Q Consensus       115 G~kAV~ky~s~~~~pa~~~~~~~~~~~k~~~k~~~~~~~~~~~~kk~~~~~~esy~~YI~kVLKQVhpd~~ISskAM~im  194 (257)
                      +..++....                     .+++-.-+.                 .-|.|+||+.+ ...||+.|..+|
T Consensus        85 a~~~~~srs---------------------~ragL~fPV-----------------~rv~rlLk~~~-a~RVs~~A~vyL  125 (172)
T d1q9ca_          85 AQSAIEKRK---------------------RRNPLSLPV-----------------EKIHPLLKEVL-GYKIDHQVSVYI  125 (172)
T ss_dssp             HHHHHC-----------------------------CCCH-----------------HHHHHHHHHHH-SSCCCHHHHHHH
T ss_pred             HHHHHhccc---------------------cccCceecH-----------------HHHHHHHHhcc-ccccccchHHHH
Confidence            999984311                     012211111                 13889999885 668999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        195 NSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       195 nSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      -..+.++-..|.+.|.+.+..+++.+||++||+.|++
T Consensus       126 aavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~  162 (172)
T d1q9ca_         126 VAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC  162 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence            9999999999999999999999999999999999998

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.7e-17  Score=136.13  Aligned_cols=78  Identities=17%  Similarity=0.317  Sum_probs=71.5

Q ss_pred             CchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhHHhh
Q psy13072        166 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE  245 (257)
Q Consensus       166 ~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhAv~e  245 (257)
                      +..|..||+|||+||||+++|+..||.+||+|+++||++|+          ...+.|.+||+.+|+++|||+|++||+.+
T Consensus        15 ~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~~i~~ll~~L~----------~~~p~sv~dVe~~v~~~fp~~i~~~ai~~   84 (172)
T d1q9ca_          15 RGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLC----------QAQPRSASDVEERVQKSFPHPIDKWAIAD   84 (172)
T ss_dssp             TTSSHHHHHHHHHHHCSSSBCCHHHHHHHHHHHHHHHHHHH----------TTCCCSTTHHHHHHHHSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH----------ccCCccHHHHHHHHHHhCCchHHHHHHHH
Confidence            45799999999999999999999999999999999999995          36688999999999999999999999999


Q ss_pred             hhhhhhcc
Q psy13072        246 GTKAVTKY  253 (257)
Q Consensus       246 G~kAV~ky  253 (257)
                      +..++...
T Consensus        85 a~~~~~sr   92 (172)
T d1q9ca_          85 AQSAIEKR   92 (172)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHhcc
Confidence            99988653

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.61  E-value=2.8e-16  Score=129.77  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcchHHHhhH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHA  242 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpgeLakhA  242 (257)
                      =|+|+|||+||+.+||..||.+|++|++|+|++|+.||..|+.+++|.||+++|||.|++++++|++.+|+
T Consensus         6 ~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~   76 (151)
T d1f1ea_           6 AIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYD   76 (151)
T ss_dssp             HHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCC
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999885

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.09  E-value=4.9e-06  Score=58.57  Aligned_cols=62  Identities=26%  Similarity=0.355  Sum_probs=56.7

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      .-|.|+.|...+ ..||..|...|...+..++..|+.+|...+.+.+|+||+..||..|++.+
T Consensus         7 a~I~ri~k~~~~-~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~~   68 (68)
T d1htaa_           7 APIGRIIKNAGA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   68 (68)
T ss_dssp             HHHHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhC
Confidence            358889998755 57999999999999999999999999999999999999999999999853

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=97.97  E-value=1.2e-05  Score=56.50  Aligned_cols=62  Identities=26%  Similarity=0.355  Sum_probs=56.6

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      .-|.|+.|...+ ..||.+|...|...+..++..|+.+|...+...+|+||+.+||..|++.+
T Consensus         7 a~I~ri~k~~~~-~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~~   68 (68)
T d1htaa_           7 APIGRIIKNAGA-ERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   68 (68)
T ss_dssp             HHHHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhC
Confidence            358889999855 57999999999999999999999999999999999999999999999853

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=97.84  E-value=1.7e-05  Score=55.56  Aligned_cols=60  Identities=17%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        171 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       171 ~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      ..|.|+.|...+ ..||..|...|.-....+++.|+.+|...+...+|.||+..||..|++
T Consensus         6 a~I~rI~k~~~~-~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_           6 APVDRLIRKAGA-ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHTTC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHhCcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            458899998754 689999999999999999999999999999999999999999999975

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=97.70  E-value=3.5e-05  Score=53.84  Aligned_cols=60  Identities=17%  Similarity=0.335  Sum_probs=55.3

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      ..|.|+.|...| ..||..|...|.-....+++.|+.+|..++...+|+||+..||..|++
T Consensus         6 a~I~rI~k~~~~-~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_           6 APVDRLIRKAGA-ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHTTC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHhCcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            358899998755 689999999999999999999999999999999999999999999875

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=5.4e-05  Score=53.00  Aligned_cols=58  Identities=12%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV  230 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAv  230 (257)
                      |.|++|.......||..|...|.-....+...|+++|...+..++|.||+.+||..||
T Consensus         8 Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai   65 (66)
T d1jfia_           8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI   65 (66)
T ss_dssp             HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred             HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence            7899997644467999999999999999999999999999999999999999998875

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00014  Score=53.42  Aligned_cols=62  Identities=24%  Similarity=0.364  Sum_probs=57.5

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhc
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLL  234 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrllL  234 (257)
                      |.|+.|+.-|| ..||++|...|......+...|+.+|...+...+|+||+..||..|+.-+=
T Consensus         8 v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~   70 (87)
T d1n1ja_           8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG   70 (87)
T ss_dssp             HHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC
Confidence            78999988776 679999999999999999999999999999999999999999999998753

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00012  Score=56.53  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=57.2

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      |.|.|++-+....|++.|--+|...+.++...|.+.|.+.++.+++..|++|+||.|+|
T Consensus        17 i~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair   75 (106)
T d1u35c1          17 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   75 (106)
T ss_dssp             HHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence            89999998888899999999999999999999999999999999999999999999997

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00025  Score=51.92  Aligned_cols=66  Identities=23%  Similarity=0.325  Sum_probs=59.0

Q ss_pred             HHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         42 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        42 I~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      |.|+.|+.-|| ..||.+|...|......+...|+.+|...+...+|+||+..||..|+.-+--.++
T Consensus         8 v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~~~~f   74 (87)
T d1n1ja_           8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY   74 (87)
T ss_dssp             HHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCcHhH
Confidence            78999998776 6799999999999999999999999999999999999999999999997654433

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=97.42  E-value=0.00015  Score=55.93  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=57.4

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      .|+|.|++-+....|++.|--+|-.++.++-.+|.+.|.+-++.+++..||+|+||.|||
T Consensus        17 rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir   76 (106)
T d1tzya_          17 RVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   76 (106)
T ss_dssp             HHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence            499999998777899999999999999999999999999999999999999999999997

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.32  E-value=0.00032  Score=51.59  Aligned_cols=61  Identities=25%  Similarity=0.341  Sum_probs=56.2

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |.|+.|+.-|+ ..||+.|...|.-...-+...|+.+|...+..++|+||+..||..|+.-+
T Consensus         5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~   66 (89)
T d2bykb1           5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   66 (89)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence            77899987655 77999999999999999999999999999999999999999999999864

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00042  Score=54.80  Aligned_cols=61  Identities=20%  Similarity=0.389  Sum_probs=58.4

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      |.|+.|..-|+..||..|...|.-...-+...|+.+|...+...+|+||+..||..|+.-+
T Consensus        10 I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~   70 (135)
T d1jfib_          10 INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   70 (135)
T ss_dssp             HHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc
Confidence            7899999999999999999999999999999999999999999999999999999999864

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=0.00053  Score=50.36  Aligned_cols=61  Identities=25%  Similarity=0.341  Sum_probs=55.8

Q ss_pred             HHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         42 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        42 I~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      |.|+.|+.-|+ ..||.+|...|.-...-+...|+.+|...+..++|+||+..||..|+.-+
T Consensus         5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~   66 (89)
T d2bykb1           5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL   66 (89)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence            77899988655 78999999999999999999999999999999999999999999999864

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00056  Score=54.03  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=61.0

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGEL  107 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeL  107 (257)
                      =|.|+.|..-|+..||..|..+|.-...-+...|+.+|...+...+|+||+..||..|+.-+-=++.
T Consensus         9 ~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~f~~f   75 (135)
T d1jfib_           9 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSY   75 (135)
T ss_dssp             HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGG
T ss_pred             HHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCcHHH
Confidence            3789999999999999999999999999999999999999999999999999999999997654444

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00022  Score=49.71  Aligned_cols=59  Identities=12%  Similarity=0.217  Sum_probs=49.8

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAV   99 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAv   99 (257)
                      =|.|++|.......||..|...|.-....+...|+.+|...+..++++||+.+||..||
T Consensus         7 rVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai   65 (66)
T d1jfia_           7 RIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI   65 (66)
T ss_dssp             HHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred             HHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence            37899998744468899999999999999999999999999999999999999998775

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.16  E-value=0.00019  Score=52.58  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        172 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       172 YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      -|.|+.+... -..||..+...+...+++.++.|+.+|..++.+.+|.|||..||..|++-
T Consensus        14 ~i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr   73 (82)
T d2huec1          14 AIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   73 (82)
T ss_dssp             HHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            3666666542 24689999999999999999999999999999999999999999999873

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00064  Score=48.49  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=53.8

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      |.|++|. .|| ..||+.|..+|.-....+.+.|+.+|...+..++|.||+.+||..||.-
T Consensus         6 VkrImK~-~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~   65 (78)
T d1n1jb_           6 IKKIMKL-DEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   65 (78)
T ss_dssp             HHHHHTT-STTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHhc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence            7788885 566 6689999999999999999999999999999999999999999999874

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=97.06  E-value=0.00079  Score=50.72  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             CchhHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHh
Q psy13072        166 KESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  233 (257)
Q Consensus       166 ~esy~~YI~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrll  233 (257)
                      +-.|..-+..+.....+|+.+++.|+..|-....+..-.+-++|..++.+.+|.||+++||+.|.||-
T Consensus        24 k~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~Larrir   91 (95)
T d1tzyc_          24 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR   91 (95)
T ss_dssp             HHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            45688889999988999999999999999999999999999999999999999999999999999863

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=97.05  E-value=0.00071  Score=51.61  Aligned_cols=59  Identities=20%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             HHHHhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd-~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      |+|.|+..+.- ..|++-|--+|...+.++..+|.+.|.+-++.+++..||+|+|+.|++
T Consensus        17 v~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~   76 (103)
T d1f66c_          17 IHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR   76 (103)
T ss_dssp             HHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred             HHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc
Confidence            88899887655 459999999999999999999999999999999999999999999998

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.89  E-value=0.00041  Score=50.73  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      -|.|+.+..- -..||..+...+...+.+.++.|+.+|..++.+.+|+|||..||..|++-
T Consensus        14 ~i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr   73 (82)
T d2huec1          14 AIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   73 (82)
T ss_dssp             HHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence            4666666652 24689999999999999999999999999999999999999999988873

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0015  Score=46.49  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             HHHHhhhhCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         42 IYKVLKQVHPD-TGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        42 I~KVLKqVhpd-~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      |.|++|. .|| ..||++|..+|.-....+.+.++.+|...+..++++||+.+||..|++-
T Consensus         6 VkrImK~-~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~   65 (78)
T d1n1jb_           6 IKKIMKL-DEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK   65 (78)
T ss_dssp             HHHHHTT-STTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHhc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhc
Confidence            7788886 566 6779999999999888899999999999999999999999999999874

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0041  Score=44.76  Aligned_cols=59  Identities=17%  Similarity=0.406  Sum_probs=55.2

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHH
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  231 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvr  231 (257)
                      +...++||-|+..|...+-.+|--+.+|+.+.+.+-|++||.+.+-.||..+|||.-..
T Consensus         9 L~eLv~~idp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   67 (74)
T d1h3ob_           9 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   67 (74)
T ss_dssp             HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            66789999999999999999999999999999999999999999999999999997653

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=96.37  E-value=0.0051  Score=46.12  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             ccchhHHHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHh
Q psy13072         34 RKESYAIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLL  102 (257)
Q Consensus        34 ~~esy~~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrll  102 (257)
                      ++-.|+..|..+.....+|+.+++.|+..|-..+-++.-.+-++|..++.+.+|-||+++||+-|.+|-
T Consensus        23 pk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~Larrir   91 (95)
T d1tzyc_          23 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR   91 (95)
T ss_dssp             CHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            356799999999999999999999999998888888888888889999999999999999999999864

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0059  Score=43.89  Aligned_cols=59  Identities=17%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             HHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         42 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        42 I~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      +...++||-|+..+...+-.+|--+..|+.+.+..-|++||.+.+-.||..+|||.-.+
T Consensus         9 L~eLv~~idp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le   67 (74)
T d1h3ob_           9 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE   67 (74)
T ss_dssp             HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999997654

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.015  Score=44.36  Aligned_cols=60  Identities=23%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             HHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         41 YIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        41 yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      -|+|.|++-+....|++.|.--|-..+.++...|-+-|.+.++.+++.-|++|+||-|+|
T Consensus        16 ri~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair   75 (106)
T d1u35c1          16 RMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA   75 (106)
T ss_dssp             HHHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence            589999998778899999998888888888888888999999999999999999999997

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=95.32  E-value=0.02  Score=43.60  Aligned_cols=61  Identities=20%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             HHHHHHhhhhCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHH
Q psy13072         40 IYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVR  100 (257)
Q Consensus        40 ~yI~KVLKqVhpd~~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvr  100 (257)
                      ..|+|.|++-+-...|++.|---|-..+..+...|-+-|.+-++.+++.-||+|+||-|+|
T Consensus        16 ~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir   76 (106)
T d1tzya_          16 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR   76 (106)
T ss_dssp             HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence            3699999997666789998888777777777777877788888999999999999999998

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=94.50  E-value=0.048  Score=41.06  Aligned_cols=67  Identities=21%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             HHHHHhhhhCCCC-CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCChhHHH
Q psy13072         41 YIYKVLKQVHPDT-GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPGELAK  109 (257)
Q Consensus        41 yI~KVLKqVhpd~-~ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpGeLaK  109 (257)
                      -|+|.|+..+..- -|+.-|---|...+.++...|-+-|.+-++.+++..||+|+|+-|++  =..||.+
T Consensus        16 rv~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~--nD~EL~~   83 (103)
T d1f66c_          16 RIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR--GDEELDS   83 (103)
T ss_dssp             HHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH--HSHHHHH
T ss_pred             HHHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc--CcHHHHH
Confidence            4788998876543 48998988888888888888888888888999999999999999998  3456644

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.92  E-value=0.085  Score=37.28  Aligned_cols=48  Identities=19%  Similarity=0.356  Sum_probs=41.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccChhHHHHHHHH
Q psy13072        185 GVSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  232 (257)
Q Consensus       185 ~ISskAM~imnSfvnDiferIa~EAs~La~~~kr~Tit~reIqtAvrl  232 (257)
                      .++..+-..|-.=|.+=...|..||.+.++..||.+||..||..|.|+
T Consensus        23 ~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          23 SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            466777777777777778889999999999999999999999999875

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.36  E-value=0.2  Score=35.25  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHH
Q psy13072         55 VSSKAMSIMNSFVNDIFERIAAESSRLAHYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        55 ISskam~imnSfv~DiferIa~EAs~L~~~~kk~TltsreIqtAvrl  101 (257)
                      ++-++-..|-.=|..=...|..||.+.++..+|.+||..||-.|.|+
T Consensus        24 l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_          24 LSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            45555555555555556778999999999999999999999999875

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.28  E-value=0.21  Score=34.78  Aligned_cols=53  Identities=11%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             cCCCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCcccChhHHHHHHHH
Q psy13072        180 VHPDTG-VSSKAMSIMNSFVNDIFERIAAESSRLAH-YNKRSTITSREIQTAVRL  232 (257)
Q Consensus       180 Vhpd~~-ISskAM~imnSfvnDiferIa~EAs~La~-~~kr~Tit~reIqtAvrl  232 (257)
                      -.||.+ ||..|.-++.--..-+.+.++.+|...+. .+++.||+..||-.||..
T Consensus         3 ~d~dv~~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~~   57 (72)
T d2byka1           3 SSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK   57 (72)
T ss_dssp             SSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred             CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHcc
Confidence            457766 57777777766666666789999988774 566689999999999863

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.08  E-value=0.78  Score=31.62  Aligned_cols=53  Identities=11%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             hCCCCCc-chHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCCCCChhHHHHHHHH
Q psy13072         49 VHPDTGV-SSKAMSIMNSFVNDIFERIAAESSRLA-HYNKRSTITSREIQTAVRL  101 (257)
Q Consensus        49 Vhpd~~I-Sskam~imnSfv~DiferIa~EAs~L~-~~~kk~TltsreIqtAvrl  101 (257)
                      -.||.++ |..|.-++.--.--+.+.++.+|...+ ..++++||+..||-.||.-
T Consensus         3 ~d~dv~~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~~   57 (72)
T d2byka1           3 SSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK   57 (72)
T ss_dssp             SSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred             CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHcc
Confidence            4577655 666655544444444467888887776 4566789999999999863

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=84.60  E-value=2.2  Score=33.03  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             hHHHHHHHhhhcCCCCCcchHHHHHHHHHHH------------HHHHHHHHHHhhhhhhcCCcccChhHHHHHHHHhcch
Q psy13072        169 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFVN------------DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  236 (257)
Q Consensus       169 y~~YI~kVLKQVhpd~~ISskAM~imnSfvn------------DiferIa~EAs~La~~~kr~Tit~reIqtAvrllLpg  236 (257)
                      ...++.+.++..+.+..++..++..+.....            -....+..+|..+|..+.+.+|+..||+.|..-+|=|
T Consensus       197 ~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~~~~g  276 (276)
T d1fnna2         197 IFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG  276 (276)
T ss_dssp             HHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence            4456677788888888899888876654320            0123456778889999999999999999999877643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.57  E-value=3  Score=32.12  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             hHHHHHHHhhhhCCCCCcchHHHHHHHHHH----------H--HHHHHHHHHHhhhhhhcCCCCCChhHHHHHHHHhCCh
Q psy13072         38 YAIYIYKVLKQVHPDTGVSSKAMSIMNSFV----------N--DIFERIAAESSRLAHYNKRSTITSREIQTAVRLLLPG  105 (257)
Q Consensus        38 y~~yI~KVLKqVhpd~~ISskam~imnSfv----------~--DiferIa~EAs~L~~~~kk~TltsreIqtAvrllLpG  105 (257)
                      ...++.+.++..+.+..++.+++..+....          .  -....+..+|..++..+.+.+|+.+||+.|.+-||=|
T Consensus       197 ~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~~~~g  276 (276)
T d1fnna2         197 IFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG  276 (276)
T ss_dssp             HHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence            345666777888888888988877654432          0  0123455678889999999999999999999987654

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.56  E-value=3.4  Score=29.78  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh-cCCcccChhHHHHHHHHhc
Q psy13072        173 IYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAESSRLAHY-NKRSTITSREIQTAVRLLL  234 (257)
Q Consensus       173 I~kVLKQVhpd~~ISskAM~imnSfvnDiferIa~EAs~La~~-~kr~Tit~reIqtAvrllL  234 (257)
                      |.|++.++. +.+||....-+|..+-.=+.-.|.++|-.+... .....|.+.+|..|+|.+-
T Consensus        22 vkrl~~~~~-g~sv~~~v~i~v~giaKvFvGEiVE~A~~V~~~~~e~~PL~P~HireA~rrl~   83 (89)
T d1bh9b_          22 IKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK   83 (89)
T ss_dssp             HHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence            778888886 688998888888888888888899999888754 3455999999999999763