Psyllid ID: psy13245

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
cccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccccEEEEEcccccEEEEEEcccccccccccccEEcccccEEccccccccccccEEEEEEcccccccHHHHHHcccccEEEEEEc
cccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEEcccccccEEccccccccHHHHHHHHHcccccccEEEEEEcccccccHHHHHHcccccEEEEEEc
MVRVNVLSDALKSINNAekrgkrqvliRPCSKVIVKFLTVMMKHgyigefeivddhraGKIVVNLKGrlnkcgvisprfdvpirhIEKWtnnllpsrqfGYVVLTtsggimdhEEARRKHlggkilgfff
MVRVNVLSDALksinnaekrgkrqvlirpcSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNlkgrlnkcgvisprfdvpIRHIEKWtnnllpsrqFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
**********************RQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF*
*VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
**RVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query130 2.2.26 [Sep-21-2011]
Q6XIM8130 40S ribosomal protein S15 N/A N/A 1.0 1.0 0.930 4e-67
P48149130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.930 4e-67
Q7KR04130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.923 1e-66
P62246130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.884 1e-64
P62245130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.884 1e-64
P62244130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.884 1e-64
Q76I82130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.884 1e-64
Q5R938130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.876 3e-64
P33095130 40S ribosomal protein S15 yes N/A 1.0 1.0 0.884 2e-63
Q90YQ8130 40S ribosomal protein S15 N/A N/A 1.0 1.0 0.861 1e-62
>sp|Q6XIM8|RS15A_DROYA 40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3 Back     alignment and function desciption
 Score =  252 bits (644), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 126/130 (96%)

Query: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
           MVR+NVL+DALK INNAEKRGKRQVL+RPCSKVI+KFLTVMMKHGYIGEFEIVDDHR+GK
Sbjct: 1   MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGK 60

Query: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
           IVVNL GRLNKCGVISPRFDVPI  IEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120

Query: 121 LGGKILGFFF 130
           LGGKILGFFF
Sbjct: 121 LGGKILGFFF 130

Drosophila yakuba (taxid: 7245)
>sp|P48149|RS15A_DROME 40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2 Back     alignment and function description
>sp|Q7KR04|RS15B_DROME 40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3 Back     alignment and function description
>sp|P62246|RS15A_RAT 40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2 Back     alignment and function description
>sp|P62245|RS15A_MOUSE 40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2 Back     alignment and function description
>sp|P62244|RS15A_HUMAN 40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2 Back     alignment and function description
>sp|Q76I82|RS15A_BOVIN 40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1 Back     alignment and function description
>sp|Q5R938|RS15A_PONAB 40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1 Back     alignment and function description
>sp|P33095|RS15A_STRPU 40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3 Back     alignment and function description
>sp|Q90YQ8|RS15A_ICTPU 40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
110671418130 putative ribosomal protein S15A [Diaphor 1.0 1.0 1.0 2e-69
332374812130 unknown [Dendroctonus ponderosae] 1.0 1.0 0.969 1e-67
264667377130 ribosomal protein S15A [Chrysomela tremu 1.0 1.0 0.961 2e-67
91090057130 PREDICTED: similar to ribosomal protein 1.0 1.0 0.961 2e-67
70909563130 ribosomal protein S15Ae [Curculio glandi 1.0 1.0 0.961 4e-67
242003930130 40S ribosomal protein S15A, putative [Pe 1.0 1.0 0.961 4e-67
62083449130 ribosomal protein S15A [Lysiphlebus test 1.0 1.0 0.961 5e-67
50344492130 S15Ae ribosomal protein [Biphyllus lunat 1.0 1.0 0.953 1e-66
307189014130 40S ribosomal protein S15a [Camponotus f 1.0 1.0 0.946 3e-66
322790861131 hypothetical protein SINV_12532 [Solenop 1.0 0.992 0.946 3e-66
>gi|110671418|gb|ABG81960.1| putative ribosomal protein S15A [Diaphorina citri] Back     alignment and taxonomy information
 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
           MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
           IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH
Sbjct: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120

Query: 121 LGGKILGFFF 130
           LGGKILGFFF
Sbjct: 121 LGGKILGFFF 130

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332374812|gb|AEE62547.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|264667377|gb|ACY71274.1| ribosomal protein S15A [Chrysomela tremula] Back     alignment and taxonomy information
>gi|91090057|ref|XP_968917.1| PREDICTED: similar to ribosomal protein S15Ae [Tribolium castaneum] gi|270013522|gb|EFA09970.1| hypothetical protein TcasGA2_TC012128 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|70909563|emb|CAJ17203.1| ribosomal protein S15Ae [Curculio glandium] Back     alignment and taxonomy information
>gi|242003930|ref|XP_002422912.1| 40S ribosomal protein S15A, putative [Pediculus humanus corporis] gi|212505805|gb|EEB10174.1| 40S ribosomal protein S15A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|62083449|gb|AAX62449.1| ribosomal protein S15A [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|50344492|emb|CAH04332.1| S15Ae ribosomal protein [Biphyllus lunatus] Back     alignment and taxonomy information
>gi|307189014|gb|EFN73531.1| 40S ribosomal protein S15a [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322790861|gb|EFZ15546.1| hypothetical protein SINV_12532 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query130
FB|FBgn0010198130 RpS15Aa "Ribosomal protein S15 1.0 1.0 0.930 1.4e-62
FB|FBgn0033555130 RpS15Ab "Ribosomal protein S15 1.0 1.0 0.923 4.8e-62
UNIPROTKB|F1NXW3136 RPS15A "Uncharacterized protei 1.0 0.955 0.892 2.4e-60
UNIPROTKB|Q76I82130 RPS15A "40S ribosomal protein 1.0 1.0 0.884 6.4e-60
UNIPROTKB|J9P798130 RPS15A "Uncharacterized protei 1.0 1.0 0.884 6.4e-60
UNIPROTKB|P62244130 RPS15A "40S ribosomal protein 1.0 1.0 0.884 6.4e-60
RGD|619939130 Rps15a "ribosomal protein S15a 1.0 1.0 0.884 6.4e-60
ZFIN|ZDB-GENE-030131-8708130 rps15a "ribosomal protein S15a 1.0 1.0 0.876 1e-59
RGD|2319559130 Rps15al4 "ribosomal protein S1 1.0 1.0 0.876 2.7e-59
UNIPROTKB|E1BLY1130 E1BLY1 "Uncharacterized protei 1.0 1.0 0.869 5.7e-59
FB|FBgn0010198 RpS15Aa "Ribosomal protein S15Aa" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 121/130 (93%), Positives = 126/130 (96%)

Query:     1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
             MVR+NVL+DALK INNAEKRGKRQVL+RPCSKVI+KFLTVMMKHGYIGEFEIVDDHR+GK
Sbjct:     1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGK 60

Query:    61 IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
             IVVNL GRLNKCGVISPRFDVPI  IEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH
Sbjct:    61 IVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120

Query:   121 LGGKILGFFF 130
             LGGKILGFFF
Sbjct:   121 LGGKILGFFF 130
GO:0006412 "translation" evidence=ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
FB|FBgn0033555 RpS15Ab "Ribosomal protein S15Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXW3 RPS15A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q76I82 RPS15A "40S ribosomal protein S15a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P798 RPS15A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62244 RPS15A "40S ribosomal protein S15a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619939 Rps15a "ribosomal protein S15a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8708 rps15a "ribosomal protein S15a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2319559 Rps15al4 "ribosomal protein S15A-like 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLY1 E1BLY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q00332RS15A_BRANANo assigned EC number0.79231.01.0N/AN/A
Q90YQ8RS15A_ICTPUNo assigned EC number0.86151.01.0N/AN/A
A1RWS0RS8_THEPDNo assigned EC number0.48030.97690.9844yesN/A
Q9AT34RS15A_DAUCANo assigned EC number0.79231.01.0N/AN/A
A8MAJ5RS8_CALMQNo assigned EC number0.51.01.0yesN/A
Q8TRT2RS8_METACNo assigned EC number0.45381.01.0yesN/A
A4YCY1RS8_METS5No assigned EC number0.45111.00.9774yesN/A
Q76I82RS15A_BOVINNo assigned EC number0.88461.01.0yesN/A
P50891RS15A_PARLINo assigned EC number0.84611.01.0N/AN/A
A3CT12RS8_METMJNo assigned EC number0.42301.01.0yesN/A
C3NEF8RS8_SULIYNo assigned EC number0.46611.00.9774yesN/A
P33095RS15A_STRPUNo assigned EC number0.88461.01.0yesN/A
Q6XIM8RS15A_DROYANo assigned EC number0.93071.01.0N/AN/A
O14469RS22_SCHPONo assigned EC number0.71531.01.0yesN/A
P33953RS22_KLUMANo assigned EC number0.76921.01.0N/AN/A
Q3E7Y3RS22B_YEASTNo assigned EC number0.77691.01.0yesN/A
C3NH94RS8_SULINNo assigned EC number0.46611.00.9774yesN/A
Q9LX88R15A4_ARATHNo assigned EC number0.77691.01.0yesN/A
Q7KR04RS15B_DROMENo assigned EC number0.92301.01.0yesN/A
P62244RS15A_HUMANNo assigned EC number0.88461.01.0yesN/A
P62245RS15A_MOUSENo assigned EC number0.88461.01.0yesN/A
P62246RS15A_RATNo assigned EC number0.88461.01.0yesN/A
A0B9V5RS8_METTPNo assigned EC number0.45660.97690.9844yesN/A
O80646R15A3_ARATHNo assigned EC number0.74611.01.0noN/A
Q7RV75RS22_NEUCRNo assigned EC number0.76151.01.0N/AN/A
Q6FMW9RS22_CANGANo assigned EC number0.77691.01.0yesN/A
P0C0W1RS22A_YEASTNo assigned EC number0.78461.01.0yesN/A
Q6CW21RS22_KLULANo assigned EC number0.76921.01.0yesN/A
Q8PV35RS8_METMANo assigned EC number0.46151.01.0yesN/A
C5A270RS8_THEGJNo assigned EC number0.44611.01.0yesN/A
A3MSJ6RS8_PYRCJNo assigned EC number0.47691.01.0yesN/A
Q5JJG3RS8_PYRKONo assigned EC number0.45381.01.0yesN/A
Q96W54RS22_CANALNo assigned EC number0.77691.01.0N/AN/A
C6A175RS8_THESMNo assigned EC number0.46151.01.0yesN/A
B1Y8V5RS8_PYRNVNo assigned EC number0.46921.01.0yesN/A
P46792RS22_AGABINo assigned EC number0.69231.01.0N/AN/A
P46793RS15A_DICDINo assigned EC number0.73071.01.0yesN/A
P42798R15A1_ARATHNo assigned EC number0.79231.01.0yesN/A
O59432RS8_PYRHONo assigned EC number0.46151.01.0yesN/A
P48149RS15A_DROMENo assigned EC number0.93071.01.0yesN/A
Q9M0E0R15A5_ARATHNo assigned EC number0.5040.96150.9689noN/A
Q8U014RS8_PYRFUNo assigned EC number0.46921.01.0yesN/A
Q46GB0RS8_METBFNo assigned EC number0.46921.01.0yesN/A
Q752J5RS22_ASHGONo assigned EC number0.76921.01.0yesN/A
Q9V1V0RS8_PYRABNo assigned EC number0.46921.01.0yesN/A
Q5R938RS15A_PONABNo assigned EC number0.87691.01.0yesN/A
A7I5Q4RS8_METB6No assigned EC number0.41531.01.0yesN/A
A2SPL7RS8_METLZNo assigned EC number0.43841.01.0yesN/A
Q0W1X3RS8_UNCMANo assigned EC number0.46921.01.0yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
PTZ00158130 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Pr 3e-90
PLN00146130 PLN00146, PLN00146, 40S ribosomal protein S15a; Pr 9e-82
PRK04034130 PRK04034, rps8p, 30S ribosomal protein S8P; Review 1e-58
COG0096132 COG0096, RpsH, Ribosomal protein S8 [Translation, 7e-45
pfam00410129 pfam00410, Ribosomal_S8, Ribosomal protein S8 6e-37
PRK00136130 PRK00136, rpsH, 30S ribosomal protein S8; Validate 4e-13
CHL00042132 CHL00042, rps8, ribosomal protein S8 7e-10
>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional Back     alignment and domain information 
 Score =  256 bits (657), Expect = 3e-90
 Identities = 105/130 (80%), Positives = 117/130 (90%)

Query: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
           MVR++VL+D L+SI NAEK+GKRQVLIRP SKV+VKFL VM KHGYIGEFEIVDDHR+GK
Sbjct: 1   MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGK 60

Query: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
           IVVNL GRLNKCGVISPRFDV +   EKW NN+LPSRQFG+VVLTTS GIMDHEEARR+H
Sbjct: 61  IVVNLNGRLNKCGVISPRFDVTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRH 120

Query: 121 LGGKILGFFF 130
            GGKILGFF+
Sbjct: 121 TGGKILGFFY 130

Length = 130
>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional Back     alignment and domain information
>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed Back     alignment and domain information
>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8 Back     alignment and domain information
>gnl|CDD|234658 PRK00136, rpsH, 30S ribosomal protein S8; Validated Back     alignment and domain information
>gnl|CDD|214344 CHL00042, rps8, ribosomal protein S8 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 130
PLN00146130 40S ribosomal protein S15a; Provisional 100.0
PTZ00158130 40S ribosomal protein S15A; Provisional 100.0
COG0096132 RpsH Ribosomal protein S8 [Translation, ribosomal 100.0
PRK04034130 rps8p 30S ribosomal protein S8P; Reviewed 100.0
CHL00042132 rps8 ribosomal protein S8 100.0
PRK00136130 rpsH 30S ribosomal protein S8; Validated 100.0
PF00410129 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR0 100.0
KOG1754|consensus130 100.0
>PLN00146 40S ribosomal protein S15a; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-51  Score=296.00  Aligned_cols=130  Identities=78%  Similarity=1.294  Sum_probs=123.9

Q ss_pred             CCccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCccccccee
Q psy13245          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~IspRvy   80 (130)
                      |+++||||||||+||||+++++.+|..+|+||++++|+++|++||||++|++.+++..+.++++|||..+++++||||+|
T Consensus         1 m~~~~~iad~lt~IrNa~~a~~~~v~~~p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~~i~~~~~IS~Rvy   80 (130)
T PLN00146          1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD   80 (130)
T ss_pred             CCCcChHHHHHHHhHhHHHcCCCeEEEEcChHHHHHHHHHHHHCCCCcceEEEecCCcceEEEEEcccccCCcEEEcCEe
Confidence            89999999999999999999999953479999999999999999999999987766667899999999999999999999


Q ss_pred             ecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245         81 VPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF  130 (130)
Q Consensus        81 ~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~  130 (130)
                      ++++||++|.+|++|++|+|++|+|||+|||||+||+++++|||+||+||
T Consensus        81 ~~~~~l~~v~~~~~~~~g~Gi~IlSTskGimt~~eAr~~~vGGEvL~~vy  130 (130)
T PLN00146         81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY  130 (130)
T ss_pred             cCcchhhHHHhccCCCCCCEEEEEECCCccccHHHHHHcCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999999999999998

>PTZ00158 40S ribosomal protein S15A; Provisional Back     alignment and domain information
>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed Back     alignment and domain information
>CHL00042 rps8 ribosomal protein S8 Back     alignment and domain information
>PRK00136 rpsH 30S ribosomal protein S8; Validated Back     alignment and domain information
>PF00410 Ribosomal_S8: Ribosomal protein S8; InterPro: IPR000630 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1754|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
2zkq_h130 Structure Of A Mammalian Ribosomal 40s Subunit With 9e-66
3iz6_H130 Localization Of The Small Subunit Ribosomal Protein 1e-58
3izb_H130 Localization Of The Small Subunit Ribosomal Protein 2e-57
1s1h_H129 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 9e-57
3jyv_H125 Structure Of The 40s Rrna And Proteins And PE TRNA 1e-55
3zey_J130 High-resolution Cryo-electron Microscopy Structure 2e-53
2xzm_H130 Crystal Structure Of The Eukaryotic 40s Ribosomal S 4e-51
3j20_I130 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-32
1i6u_A130 Rna-Protein Interactions: The Crystal Structure Of 2e-28
1sei_A130 Structure Of 30s Ribosomal Protein S8 Length = 130 1e-06
1vs5_H130 Crystal Structure Of The Bacterial Ribosome From Es 9e-05
2gy9_H127 Structure Of The 30s Subunit Of A Pre-Translocation 9e-05
1p6g_H129 Real Space Refined Coordinates Of The 30s Subunit F 1e-04
1fka_H138 Fitting Of Components With Known Structure Into An 5e-04
1an7_A136 Ribosomal Protein S8 From Thermus Thermophilus Leng 5e-04
>pdb|2ZKQ|HH Chain h, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 130 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 124/130 (95%)
Query: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
           MVR+NVL+DALKSINNAEKRGKRQVLIRPCSKVIV+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1   MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
           IVVNL GRLNKCGVISPRFDV ++ +EKW NNLLPSRQFG++VLTTS GIMDHEEARRKH
Sbjct: 61  IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 121 LGGKILGFFF 130
            GGKILGFFF
Sbjct: 121 TGGKILGFFF 130
>pdb|3IZ6|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 130 Back     alignment and structure
>pdb|3IZB|H Chain H, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 130 Back     alignment and structure
>pdb|1S1H|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 129 Back     alignment and structure
>pdb|3JYV|H Chain H, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125 Back     alignment and structure
>pdb|3ZEY|J Chain J, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 130 Back     alignment and structure
>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130 Back     alignment and structure
>pdb|3J20|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 130 Back     alignment and structure
>pdb|1I6U|A Chain A, Rna-Protein Interactions: The Crystal Structure Of Ribosomal Protein S8RRNA COMPLEX FROM METHANOCOCCUS Jannaschii Length = 130 Back     alignment and structure
>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8 Length = 130 Back     alignment and structure
>pdb|1VS5|H Chain H, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 130 Back     alignment and structure
>pdb|2GY9|H Chain H, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 127 Back     alignment and structure
>pdb|1P6G|H Chain H, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 129 Back     alignment and structure
>pdb|1FKA|H Chain H, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 138 Back     alignment and structure
>pdb|1AN7|A Chain A, Ribosomal Protein S8 From Thermus Thermophilus Length = 136 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query130
3u5c_W130 40S ribosomal protein S22-A; translation, ribosome 1e-67
2xzm_H130 Ribosomal protein S8 containing protein; ribosome, 5e-66
1i6u_A130 30S ribosomal protein S8P; protein-RNA interaction 8e-66
3bbn_H134 Ribosomal protein S8; small ribosomal subunit, spi 4e-14
1sei_A130 Ribosomal protein S8; prokaryotic, rRNA-binding; 1 5e-14
2vqe_H138 30S ribosomal protein S8, 30S ribosomal protein S6 6e-14
1s03_H129 30S ribosomal protein S8; protein-RNA complex, SPC 7e-13
3rf2_A168 30S ribosomal protein S8; RNA-binding protein, hyp 6e-09
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Length = 130 Back     alignment and structure
 Score =  199 bits (508), Expect = 1e-67
 Identities = 102/130 (78%), Positives = 113/130 (86%)

Query: 1   MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 60
           M R +VL+DAL +INNAEK GKRQVLIRP SKVI+KFL VM KHGYIGEFE +DDHR+GK
Sbjct: 1   MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60

Query: 61  IVVNLKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
           IVV L GRLNKCGVISPRF+V I  IEKWT NLLP+RQFGYV+LTTS GIMDHEEARRKH
Sbjct: 61  IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120

Query: 121 LGGKILGFFF 130
           + GKILGF +
Sbjct: 121 VSGKILGFVY 130
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Length = 130 Back     alignment and structure
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Length = 130 Back     alignment and structure
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 134 Back     alignment and structure
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1 Length = 130 Back     alignment and structure
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ... Length = 138 Back     alignment and structure
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ... Length = 129 Back     alignment and structure
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus} Length = 168 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
3u5c_W130 40S ribosomal protein S22-A; translation, ribosome 100.0
1i6u_A130 30S ribosomal protein S8P; protein-RNA interaction 100.0
2xzm_H130 Ribosomal protein S8 containing protein; ribosome, 100.0
2vqe_H138 30S ribosomal protein S8, 30S ribosomal protein S6 100.0
1sei_A130 Ribosomal protein S8; prokaryotic, rRNA-binding; 1 100.0
3bbn_H134 Ribosomal protein S8; small ribosomal subunit, spi 100.0
1s03_H129 30S ribosomal protein S8; protein-RNA complex, SPC 100.0
3rf2_A168 30S ribosomal protein S8; RNA-binding protein, hyp 100.0
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h Back     alignment and structure
Probab=100.00  E-value=5.5e-55  Score=312.85  Aligned_cols=130  Identities=78%  Similarity=1.260  Sum_probs=125.3

Q ss_pred             CCccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCccccccee
Q psy13245          1 MVRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCGVISPRFD   80 (130)
Q Consensus         1 m~~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~~IspRvy   80 (130)
                      |++||+||||||+||||++++|++|+.+|+||++.+||++|++||||++|++.++++++++||+|||+.++|++||||+|
T Consensus         1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y   80 (130)
T 3u5c_W            1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN   80 (130)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred             CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence            88999999999999999999999965459999999999999999999999999998899999999999999999999999


Q ss_pred             ecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245         81 VPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF  130 (130)
Q Consensus        81 ~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~  130 (130)
                      ++.+||++|.+|++|++|+|++|||||+|||||+|||++++|||+|||||
T Consensus        81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~  130 (130)
T 3u5c_W           81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY  130 (130)
T ss_dssp             CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999999999999998
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Back     alignment and structure
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H Back     alignment and structure
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ... Back     alignment and structure
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1 Back     alignment and structure
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ... Back     alignment and structure
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 130
d1i6ua_129 d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Meth 3e-45
d1seia_130 d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stea 3e-32
d2gy9h1126 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escheric 6e-29
d1an7a_136 d.140.1.1 (A:) Ribosomal protein S8 {Thermus therm 2e-26
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 129 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  141 bits (357), Expect = 3e-45
 Identities = 58/126 (46%), Positives = 87/126 (69%)

Query: 5   NVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 64
           + L++AL  I+N E+ GK+ V I+P SK+I + L VM  +GYIGEFE ++D RAG   V 
Sbjct: 4   DPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVE 63

Query: 65  LKGRLNKCGVISPRFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGK 124
           L G++NKCG I PRF V     EK+    LP+R FG ++++T+ G+M HEEA+++ LGG+
Sbjct: 64  LIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGR 123

Query: 125 ILGFFF 130
           +L + +
Sbjct: 124 LLAYVY 129
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Length = 130 Back     information, alignment and structure
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Length = 126 Back     information, alignment and structure
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query130
d1seia_130 Ribosomal protein S8 {Bacillus stearothermophilus 100.0
d1i6ua_129 Ribosomal protein S8 {Archaeon Methanococcus janna 100.0
d1an7a_136 Ribosomal protein S8 {Thermus thermophilus [TaxId: 100.0
d2gy9h1126 Ribosomal protein S8 {Escherichia coli [TaxId: 562 100.0
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S8
superfamily: Ribosomal protein S8
family: Ribosomal protein S8
domain: Ribosomal protein S8
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.8e-47  Score=270.79  Aligned_cols=122  Identities=30%  Similarity=0.511  Sum_probs=112.5

Q ss_pred             CccchHHHHHHHhHhhhhhCCceEEEEeccchHHHHHHHHhhcCceeeEEEEcCCCCceEEEEeecccCcCc-----ccc
Q psy13245          2 VRVNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLKGRLNKCG-----VIS   76 (130)
Q Consensus         2 ~~~d~iad~lt~IrNa~~~~~~~~v~~p~sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~i~Lky~~~~~~-----~Is   76 (130)
                      +|+||||||||+||||+++++.+ |.+|+|+++.++|++|++||||++|++.++++.+.++|.|||..++|.     .+|
T Consensus         1 vm~D~iaD~lt~IrNA~~a~k~~-V~ip~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~~~i~~~~~vS   79 (130)
T d1seia_           1 VMTDPIADMLTAIRNANMVRHEK-LEVPASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNERVITGLKRIS   79 (130)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTCSE-EEEECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSSBSCCCEEECC
T ss_pred             CccchHHHHHHHHHHHHHcCCCE-EEecCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCccccccceecc
Confidence            46899999999999999999998 578999999999999999999999999998888899999999987652     234


Q ss_pred             -c--ceeecccchhhhhhCccCCCCceEEEEecCCccccHHHHHHcCCCeEEEEEEC
Q psy13245         77 -P--RFDVPIRHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF  130 (130)
Q Consensus        77 -p--Rvy~~~~~i~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~V~  130 (130)
                       |  |+|.+.++++++.+|      +|++|||||+|+|||+||+++++|||+|||||
T Consensus        80 kpg~r~y~~~~~l~~~~~g------~G~~IvSTskGimt~~eA~~~~iGGell~~Vf  130 (130)
T d1seia_          80 KPGLRVYVKAHEVPRVLNG------LGIAILSTSQGVLTDKEARQKGTGGEIIAYVI  130 (130)
T ss_dssp             BTTBCCEECGGGCCCCCTT------SCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             cCCeEEEcchhhhhhhhhh------ceEEEEECCCCeeeHHHHHHhCCCcEEEEEEC
Confidence             7  899999999998755      99999999999999999999999999999998
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure