Psyllid ID: psy13859

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYHVT
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEcccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
MNIEVESIEkkhgverdksseeadnLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAkifgerdlplkMDQAIQVIKRDIVFAPSLWTkllvggqphyyhvt
Flexible Loop (DISEMBL)
mnievesiekkhgverdksseeadnlNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKifgerdlpLKMDQAIQVIKRDIVFAPSLWTkllvggqphYYHVT
Low Complexity Region (SEG)
MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYHVT
Disordered region (IsUnstruct)
*************************LNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYH**
Disordered Region (DISOPRED)
*NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQ*******
Disordered Region (DISEMBL)
MNIEVESIE*************ADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYHVT
Disordered Region (DISPRO)
MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYHVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKLLVGGQPHYYHVT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q15477	1246	Helicase SKI2W OS=Homo sa	yes	N/A	0.648	0.056	0.475	1e-14
P35207	1287	Antiviral helicase SKI2 O	yes	N/A	0.685	0.057	0.395	3e-09
O59801	1213	Putative ATP-dependent RN	yes	N/A	0.611	0.054	0.384	9e-09
Q9CZU3	1040	Superkiller viralicidic a	no	N/A	0.592	0.061	0.421	6e-08
P42285	1042	Superkiller viralicidic a	no	N/A	0.592	0.061	0.421	6e-08
O14232	1117	ATP-dependent RNA helicas	no	N/A	0.675	0.065	0.352	3e-07
Q23223	1026	mRNA transport homolog 4	no	N/A	0.824	0.086	0.346	8e-07
P47047	1073	ATP-dependent RNA helicas	no	N/A	0.592	0.059	0.342	0.0002

>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 12/82 (14%)

Query: 26   LNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGERDLPL 73
            LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE  L  
Sbjct: 1165 LNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGA 1224

Query: 74   KMDQAIQVIKRDIVFAPSLWTK 95
            KM+ A  +++RDIVFA SL+T+
Sbjct: 1225 KMETAATLLRRDIVFAASLYTQ 1246

Helicase; has ATPase activity. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C).
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 12/86 (13%)

Query: 20   SEEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFG 67
            +E  D   F ++ VVYEWA             + EG +VR I  L E+ R +K  + I G
Sbjct: 1201 AEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG 1260

Query: 68   ERDLPLKMDQAIQVIKRDIVFAPSLW 93
               L +KM +A ++IKRDIVFA SL+
Sbjct: 1261 NSTLHMKMSRAQELIKRDIVFAASLY 1286

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway. Represses dsRNA virus propagation by specifically blocking translation of viral mRNAs, perhaps recognizing the absence of CAP or poly(A). Essential for cell growth only in the presence of M1 replicon.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 12/78 (15%)

Query: 28   FGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKM 75
            FGL++V YEWA               EG IVR I +L E+LR  +  A++ G+  +  KM
Sbjct: 1135 FGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKM 1194

Query: 76   DQAIQVIKRDIVFAPSLW 93
            ++   +I+R+IVF PSL+
Sbjct: 1195 EECQNLIRRNIVFCPSLY 1212

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 30   LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
            L+ VVY WA               EG I+RC+++L ELLR +   AK  G  +L  K  +
Sbjct: 964  LMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAE 1023

Query: 78   AIQVIKRDIVFAPSLW 93
             I  IKRDIVFA SL+
Sbjct: 1024 GITKIKRDIVFAASLY 1039

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 30   LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
            L+ VVY WA               EG I+RC+++L ELLR +   AK  G  +L  K  +
Sbjct: 966  LMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAE 1025

Query: 78   AIQVIKRDIVFAPSLW 93
             I  IKRDIVFA SL+
Sbjct: 1026 GITKIKRDIVFAASLY 1041

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)

Query: 21   EEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGE 68
            E  ++    L++VVY WA               EG ++R  ++L EL+R + D AK+ G 
Sbjct: 1032 EYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGN 1091

Query: 69   RDLPLKMDQAIQVIKRDIVFAPSLW 93
              L  KM+  I  I RDIVF+ SL+
Sbjct: 1092 TSLQQKMEDTIACIHRDIVFSASLY 1116

Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates (By similarity). Required for heterochromatic gene silencing at centromeric repeats by either exosome- or RNAi-mediated degradation of heterochromatic transcripts.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 15/104 (14%)

Query: 2    NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCI 49
            N+   S E K  V  DK      + N GL+ VVY+W                EG I+R +
Sbjct: 925  NVAKVSNECKMEVMEDKY---VSSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTL 981

Query: 50   QQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLW 93
            ++L E+LR + + AK    ++L  K + A + +KRDIVFA SL+
Sbjct: 982  RRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLY 1025

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)

Query: 30   LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
            L++VVYEW                EG ++R  ++L EL++ + D A   G   L  KM+ 
Sbjct: 997  LMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEA 1056

Query: 78   AIQVIKRDIVFAPSLW 93
             +++I RDIV A SL+
Sbjct: 1057 VLKLIHRDIVSAGSLY 1072

ATP-dependent RNA helicase required for the 3'-end formation of 5.8S RNA. Cofactor for the exosome complex that unwinds secondary structure in pre-rRNA. Required for nucleocytoplasmic transport of mRNA. May serve as a chaperone which translocates or normalizes the structure of mRNAs in preparation for export. Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
312385895	1749	hypothetical protein AND_00228 [Anophele	0.814	0.050	0.514	5e-18
170034314	1216	antiviral helicase SKI2 [Culex quinquefa	0.777	0.069	0.504	5e-17
157137573	947	helicase [Aedes aegypti] gi|108869679|gb	0.675	0.077	0.552	3e-16
347969420	1223	AGAP003182-PA [Anopheles gambiae str. PE	0.814	0.071	0.485	7e-16
242017221	1184	Helicase, putative [Pediculus humanus co	0.75	0.068	0.494	8e-16
357617976	1252	hypothetical protein KGM_14675 [Danaus p	0.824	0.071	0.504	2e-15
380024872	1225	PREDICTED: LOW QUALITY PROTEIN: helicase	0.648	0.057	0.560	2e-15
328784274	1225	PREDICTED: helicase SKI2W [Apis mellifer	0.648	0.057	0.560	2e-15
383859905	1223	PREDICTED: helicase SKI2W [Megachile rot	0.648	0.057	0.548	8e-15
195503022	1197	GE23923 [Drosophila yakuba] gi|194184579	0.759	0.068	0.505	1e-14

>gi|312385895|gb|EFR30287.1| hypothetical protein AND_00228 [Anopheles darlingi]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 67/103 (65%), Gaps = 15/103 (14%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQ 51
            ++ S+E++HGV      EE   LNFGLV+VVYEWA  K            EGIIVRCIQQ
Sbjct: 1628 DIRSVERQHGVMEVVKKEE---LNFGLVEVVYEWACNKPFAEIMTLTDIKEGIIVRCIQQ 1684

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWT 94
            L+E L ++KD A+I G+  L  KM++A   IKRDIVFA SL+T
Sbjct: 1685 LNETLCNVKDAARIIGDPVLHSKMEEASNAIKRDIVFAASLYT 1727

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034314|ref|XP_001845019.1| antiviral helicase SKI2 [Culex quinquefasciatus] gi|167875652|gb|EDS39035.1| antiviral helicase SKI2 [Culex quinquefasciatus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 68/107 (63%), Gaps = 23/107 (21%)

Query: 4    EVESIEKKHGV----ERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVR 47
            ++ S+E+ +GV    ERDK       LNFGLV+VVYEWA  K            EGIIVR
Sbjct: 1105 DIRSVEQMYGVTDLLERDK-------LNFGLVEVVYEWAQNKPFSEIMDLTDIKEGIIVR 1157

Query: 48   CIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWT 94
            CIQQL+E L ++KD A+I G+  L  KM++A   IKRDIVFA SL+T
Sbjct: 1158 CIQQLNETLCNVKDAARIIGDPVLHSKMEEASNAIKRDIVFAASLYT 1204

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137573|ref|XP_001664014.1| helicase [Aedes aegypti] gi|108869679|gb|EAT33904.1| AAEL013825-PA [Aedes aegypti]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 12/85 (14%)

Query: 22  EADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGER 69
           E D LNFGL++VVYEWA  K            EGIIVRCIQQL+E L ++KD A+I G+ 
Sbjct: 851 EKDELNFGLIEVVYEWARNKPFAEIMELTDIKEGIIVRCIQQLNETLCNVKDAARIIGDP 910

Query: 70  DLPLKMDQAIQVIKRDIVFAPSLWT 94
            L  KM++A   IKRDIVFA SL+T
Sbjct: 911 VLHSKMEEASNAIKRDIVFAASLYT 935

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969420|ref|XP_312880.4| AGAP003182-PA [Anopheles gambiae str. PEST] gi|333468516|gb|EAA08476.4| AGAP003182-PA [Anopheles gambiae str. PEST]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 15/103 (14%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQ 51
            ++  +E+++GV      EE   LNFGL +VVYEWA  K            EGIIVRCIQQ
Sbjct: 1114 DIRLVERQYGVTDVCKKEE---LNFGLTEVVYEWARNKPFAEIMLLTDIKEGIIVRCIQQ 1170

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWT 94
            L+E L ++KD A+I G+  L  KM++A   IKRDIVFA SL+T
Sbjct: 1171 LNETLCNVKDAARIIGDPVLHSKMEEASNAIKRDIVFAASLYT 1213

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017221|ref|XP_002429090.1| Helicase, putative [Pediculus humanus corporis] gi|212513954|gb|EEB16352.1| Helicase, putative [Pediculus humanus corporis]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 12/93 (12%)

Query: 13   GVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIK 60
            GV + +++   +N+NF LV VVYEWA +K            EGIIVRCIQQL+E ++ +K
Sbjct: 1090 GVNQAEATGNEENMNFDLVPVVYEWAREKPFAQIMTLTDVQEGIIVRCIQQLNETIKEVK 1149

Query: 61   DGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLW 93
            + AKI GE  L  KM+ A   IKRDIVFA SL+
Sbjct: 1150 NAAKIIGEPTLQQKMEDASNAIKRDIVFAASLY 1182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617976|gb|EHJ71092.1| hypothetical protein KGM_14675 [Danaus plexippus]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 14/103 (13%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQK------------EGIIVRCIQQ 51
            E+  IE K+ V + +   +A+ LNFGLV+VVYEWA++K            EGIIVRCIQQ
Sbjct: 1144 ELTRIEAKYMVGQFEG--QAERLNFGLVRVVYEWALEKPFAEIIDLTDVQEGIIVRCIQQ 1201

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWT 94
            L ELL  +KD A   G+  L  KM +A   IKRDIVFA SL+T
Sbjct: 1202 LHELLVDVKDAAVAIGDPKLQAKMMEASTAIKRDIVFAASLYT 1244

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024872|ref|XP_003696213.1| PREDICTED: LOW QUALITY PROTEIN: helicase SKI2W-like [Apis florea]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 12/82 (14%)

Query: 26   LNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPL 73
            LNFGLV+VVY+WA  K            EGIIVRCIQQLSE LR +K+ A   G+  L  
Sbjct: 1143 LNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAATTIGDPVLKE 1202

Query: 74   KMDQAIQVIKRDIVFAPSLWTK 95
            KM++A  VIKRDIVFA SL+T+
Sbjct: 1203 KMEEASTVIKRDIVFAASLYTQ 1224

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784274|ref|XP_397131.4| PREDICTED: helicase SKI2W [Apis mellifera]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 12/82 (14%)

Query: 26   LNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPL 73
            LNFGLV+VVY+WA  K            EGIIVRCIQQLSE LR +K+ A   G+  L  
Sbjct: 1143 LNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAATTIGDPVLKE 1202

Query: 74   KMDQAIQVIKRDIVFAPSLWTK 95
            KM++A  VIKRDIVFA SL+T+
Sbjct: 1203 KMEEASTVIKRDIVFAASLYTQ 1224

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859905|ref|XP_003705432.1| PREDICTED: helicase SKI2W [Megachile rotundata]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 12/82 (14%)

Query: 26   LNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPL 73
            LNFGLV+VVY+WA  K            EGIIVRCIQQLSE LR +K+ A   G+  L  
Sbjct: 1141 LNFGLVEVVYDWAKAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAAVTIGDPVLKE 1200

Query: 74   KMDQAIQVIKRDIVFAPSLWTK 95
            KM++A   IKRDIVFA SL+T+
Sbjct: 1201 KMEEACTAIKRDIVFAASLYTQ 1222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503022|ref|XP_002098478.1| GE23923 [Drosophila yakuba] gi|194184579|gb|EDW98190.1| GE23923 [Drosophila yakuba]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 13/95 (13%)

Query: 15   ERDKSSEEADN-LNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKD 61
            +R +++ E+DN LNFGL++VVYEWA  K            EGIIVRCIQQL+E LR +K 
Sbjct: 1103 QRYQAAIESDNRLNFGLLEVVYEWARNKPFAEIMKLTTVQEGIIVRCIQQLNETLRDVKT 1162

Query: 62   GAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKL 96
             A   G   L  KM++A   IKRDIVF  SL+T+L
Sbjct: 1163 AAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL 1197

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0039117	1197	tst "twister" [Drosophila mela	0.759	0.068	0.494	9.3e-14
UNIPROTKB|F5H6Y7	880	SKIV2L "Helicase SKI2W" [Homo	0.694	0.085	0.459	2.5e-12
UNIPROTKB|F5H7B0	1053	SKIV2L "Helicase SKI2W" [Homo	0.694	0.071	0.459	3.2e-12
UNIPROTKB|F8VS23	1053	SKIV2L "Helicase SKI2W" [Homo	0.694	0.071	0.459	3.2e-12
UNIPROTKB|B4DM01	1088	SKIV2L "cDNA FLJ57529, highly	0.694	0.068	0.459	3.3e-12
UNIPROTKB|F8VNU1	1088	SKIV2L "Helicase SKI2W" [Homo	0.694	0.068	0.459	3.3e-12
UNIPROTKB|F1LP39	1206	Skiv2l "Protein Skiv2l" [Rattu	0.694	0.062	0.459	3.7e-12
RGD|1303059	1241	Skiv2l "superkiller viralicidi	0.694	0.060	0.459	3.9e-12
UNIPROTKB|E1BMS0	1246	LOC100139548 "Uncharacterized	0.694	0.060	0.459	3.9e-12
UNIPROTKB|E2RSD6	1246	SKIV2L "Uncharacterized protei	0.694	0.060	0.459	3.9e-12

FB|FBgn0039117 tst "twister" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 47/95 (49%), Positives = 60/95 (63%)

Query:    15 ERDKSSEEADN-LNFGLVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKD 61
             +R +++ E DN LNFGL++VVYEWA  K            EGIIVRCIQQL+E +R +K 
Sbjct:  1103 QRFQAAIETDNRLNFGLLEVVYEWARNKPFAEIMKLTTVQEGIIVRCIQQLNETVRDVKT 1162

Query:    62 GAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWTKL 96
              A   G   L  KM++A   IKRDIVF  SL+T+L
Sbjct:  1163 AAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL 1197

GO:0004386 "helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|F5H6Y7 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:   794 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 853

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:   854 PVLGAKMETAATLLRRDIVFAASLYTQ 880

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F5H7B0 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:   967 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1026

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1027 PVLGAKMETAATLLRRDIVFAASLYTQ 1053

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8VS23 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:   967 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1026

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1027 PVLGAKMETAATLLRRDIVFAASLYTQ 1053

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B4DM01 SKIV2L "cDNA FLJ57529, highly similar to Helicase SKI2W (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1002 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1061

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1062 PVLGAKMETAATLLRRDIVFAASLYTQ 1088

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8VNU1 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1002 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1061

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1062 PVLGAKMETAATLLRRDIVFAASLYTQ 1088

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1LP39 Skiv2l "Protein Skiv2l" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1120 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1179

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1180 PVLGAKMETAATLLRRDIVFAASLYTQ 1206

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

RGD|1303059 Skiv2l "superkiller viralicidic activity 2-like (S. cerevisiae )" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1155 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1214

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1215 PVLGAKMETAATLLRRDIVFAASLYTQ 1241

GO:0055087 "Ski complex" evidence=ISO

UNIPROTKB|E1BMS0 LOC100139548 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1160 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1219

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1220 PVLGAKMETAATLLRRDIVFAASLYTQ 1246

GO:0055087 "Ski complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RSD6 SKIV2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/87 (45%), Positives = 56/87 (64%)

Query:    21 EEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFGE 68
             E    LNFGLV+VVYEWA               EG++VRCIQ+L+E+ RS++  A++ GE
Sbjct:  1160 EFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGE 1219

Query:    69 RDLPLKMDQAIQVIKRDIVFAPSLWTK 95
               L  KM+ A  +++RDIVFA SL+T+
Sbjct:  1220 PVLGAKMETAATLLRRDIVFAASLYTQ 1246

GO:0055087 "Ski complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
pfam08148	178	pfam08148, DSHCT, DSHCT (NUC185) domain	3e-24
COG4581	1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	8e-11

>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain

 Score = 90.0 bits (224), Expect = 3e-24
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 15/103 (14%)

Query: 4   EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA--------MQK----EGIIVRCIQQ 51
           ++  +E++HG++  +  E     +FGL++VVYEWA         ++    EG IVR I++
Sbjct: 79  KLAKVEREHGLDEPEYVER---FDFGLMEVVYEWARGASFSEICEETDLFEGDIVRVIRR 135

Query: 52  LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSLWT 94
           L ELLR + + AKI G+ +L  K ++AI++I+RDIVFA SL+ 
Sbjct: 136 LDELLRQLANAAKIIGDPELAEKAEEAIELIRRDIVFAASLYL 178

This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. Length = 178

>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA--MQK----------EGIIVRCIQQ 51
            ++   +    +E      E ++ + GL++VVYEWA  +            EG  VR  ++
Sbjct: 942  KLNKDQNSSQIE---IYPELNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRR 998

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92
            L ELLR ++  A + G  +L  K  +AIQ I+RDIVF  SL
Sbjct: 999  LRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIVFVDSL 1039

Length = 1041

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG0948|consensus	1041		100.0
PF08148	180	DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961	99.97
KOG0947|consensus	1248		99.95
COG4581	1041	Superfamily II RNA helicase [DNA replication, reco	99.8
KOG3337|consensus	201		81.44

>KOG0948|consensus

Probab=100.00  E-value=5.9e-35  Score=256.74  Aligned_cols=93  Identities=39%  Similarity=0.633  Sum_probs=91.5

Q ss_pred             ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859          1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE   68 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~   68 (108)
                      .|++||+|+.+|+++++++ +|+++|+|+||+|||+||+|            ||||||||+||||||||||.+||++|||
T Consensus       937 ~ArrIAkVs~ecKlEide~-~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGn 1015 (1041)
T KOG0948|consen  937 SARRIAKVSKECKLEIDEE-DYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGN 1015 (1041)
T ss_pred             HHHHHHHHHHhhccccCHH-HHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4899999999999999998 99999999999999999999            9999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         69 RDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        69 ~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      .+|++||+.++.+|||||||++||||
T Consensus      1016 teLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 1016 TELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred             hHHHHHHHHHHHHHhhceeehhhccC
Confidence            99999999999999999999999997

>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases []

Probab=99.97  E-value=9e-33  Score=205.89  Aligned_cols=91  Identities=43%  Similarity=0.742  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859          1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE   68 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~   68 (108)
                      ++++|.+++.+||+  +.+ +|.++++|+||++||+||+|            +||+|||++||++|||||++.||+.+||
T Consensus        78 ~~~~l~~~~~~~~l--~~~-~~~~~~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~  154 (180)
T PF08148_consen   78 IAERLAKVEREHGL--DEE-EYVERFDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGD  154 (180)
T ss_dssp             HHHHHHHHHHHTT---HHH-HHHHCSTTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred             HHHHHHHHHHHhCC--CCc-ccccCCCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            47899999999999  444 89999999999999999999            9999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         69 RDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        69 ~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      ++|.+|+++|+++|||||||++||||
T Consensus       155 ~~L~~~~~~a~~~i~R~iV~~~SLYl  180 (180)
T PF08148_consen  155 PELAEKAREAIDLIRRDIVFASSLYL  180 (180)
T ss_dssp             HHHHHHHHHHHHHHSHCCCC---TT-
T ss_pred             HHHHHHHHHHHHhccCCccccccccC
Confidence            99999999999999999999999997

; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.

>KOG0947|consensus

Probab=99.95  E-value=2.7e-28  Score=218.24  Aligned_cols=94  Identities=44%  Similarity=0.685  Sum_probs=90.3

Q ss_pred             ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859          1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE   68 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~   68 (108)
                      +|+++.+++..|++..+.+++|...++|+||+|||+||+|            .||+|||||+||+|+|||+++|++++||
T Consensus      1143 v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd 1222 (1248)
T KOG0947|consen 1143 VAKRLEEVQSSHQLLQTPEEEFPCELRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGD 1222 (1248)
T ss_pred             HHHHHHHHHHhhccccCchhhccccccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCc
Confidence            4789999999999998877688899999999999999999            9999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         69 RDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        69 ~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      |.|..||+.|+++|||||||++|||+
T Consensus      1223 ~~L~~Km~~as~~ikRdIVFaaSLY~ 1248 (1248)
T KOG0947|consen 1223 PVLHEKMEAASALIKRDIVFAASLYL 1248 (1248)
T ss_pred             HHHHHHHHHHHHHhccCccchhhccC
Confidence            99999999999999999999999996

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]

Probab=99.80  E-value=4.8e-20  Score=166.60  Aligned_cols=90  Identities=37%  Similarity=0.598  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCCC
Q psy13859          2 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGER   69 (108)
Q Consensus         2 a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~~   69 (108)
                      +++|.+++.++++++..+   ++.|.++||++||+||+|            +|||+||.++|++|+|+|+..|+.++||+
T Consensus       940 ~~kl~~~~~~~~i~~~~~---l~~~~~~lm~vv~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~ 1016 (1041)
T COG4581         940 ARKLNKDQNSSQIEIYPE---LNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNP 1016 (1041)
T ss_pred             HHHHHHHHHhcCCcCCcc---cccccccHHHHHHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCH
Confidence            679999999999999865   889999999999999999            99999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhhcCCccccchhhh
Q psy13859         70 DLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        70 ~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      +|..|+..++..|||||||++|||+
T Consensus      1017 ~L~~k~~~~~~~irr~iv~~~sly~ 1041 (1041)
T COG4581        1017 ELEEKAYRAIQEIRRDIVFVDSLYL 1041 (1041)
T ss_pred             HHHHHHHHHHHhhhcCeEecccccC
Confidence            9999999999999999999999996

>KOG3337|consensus

Probab=81.44  E-value=2.9  Score=32.53  Aligned_cols=59  Identities=15%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             hhhhhhcchhHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHhhhhCCCcHHHHHHHHHHh
Q psy13859         20 SEEADNLNFGLVQVVYEWAMQ-KEGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQAIQV   81 (108)
Q Consensus        20 ~~y~~~~~~~LmevVy~Wa~G-~EGsIVR~irRL~ELlrql~~Aa~~iG~~~L~~k~~~a~~~   81 (108)
                      ..|+++++||++.-|++|..- |--.|-.+.+=|.+.|.++-+-|   .++.+..++-++-..
T Consensus       126 ~kfvss~~~G~~r~Vqe~sl~rFkenv~ktrkGl~yvlqk~fg~a---~~~~~~~~~~~~k~~  185 (201)
T KOG3337|consen  126 EKFVSSSLFGVSRAVQEFSLARFKENVTKTRKGLEYVLQKLFGEA---NSKTLKMTAIEAKEK  185 (201)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc---cchHHHHHHHHHHHH
Confidence            488999999999999999976 88899999999999999998766   778887777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
4a4z_A	997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		2e-10
3l9o_A	1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		2e-05
2xgj_A	1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		2e-05

>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 20  SEEADNLNFGLVQVVYEWAM------------QKEGIIVRCIQQLSELLRSIKDGAKIFG 67
           +E  D   F ++ VVYEWA             + EG +VR I  L E+ R +K  + I G
Sbjct: 911 AEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG 970
Query: 68  ERDLPLKMDQAIQVIKRDIVFAPSLW 93
              L +KM +A ++IKRDIVFA SL+
Sbjct: 971 NSTLHMKMSRAQELIKRDIVFAASLY 996

>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 30   LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
            L++VVYEW                EG ++R  ++L EL++ + D A   G   L  KM+ 
Sbjct: 1032 LMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEA 1091
Query: 78   AIQVIKRDIVFAPSLW 93
             +++I RDIV A SL+
Sbjct: 1092 VLKLIHRDIVSAGSLY 1107

>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 30   LVQVVYEWAMQK------------EGIIVRCIQQLSELLRSIKDGAKIFGERDLPLKMDQ 77
            L++VVYEW                EG ++R  ++L EL++ + D A   G   L  KM+ 
Sbjct: 934  LMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEA 993
Query: 78   AIQVIKRDIVFAPSLW 93
             +++I RDIV A SL+
Sbjct: 994  VLKLIHRDIVSAGSLY 1009

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	2e-24
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	3e-24
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	3e-23

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010

 Score = 95.2 bits (236), Expect = 2e-24
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA--------MQK----EGIIVRCIQQ 51
            ++  I K   +E     +  ++    L++VVYEW          +     EG ++R  ++
Sbjct: 909  KIAKIMKDSKIEVV-EKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKR 967

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92
            L EL++ + D A   G   L  KM+  +++I RDIV A SL
Sbjct: 968  LEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSL 1008

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108

 Score = 94.9 bits (235), Expect = 3e-24
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 4    EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA--------MQK----EGIIVRCIQQ 51
            ++  I K   +E     +  ++    L++VVYEW          +     EG ++R  ++
Sbjct: 1007 KIAKIMKDSKIEVV-EKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKR 1065

Query: 52   LSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92
            L EL++ + D A   G   L  KM+  +++I RDIV A SL
Sbjct: 1066 LEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSL 1106

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997

 Score = 91.8 bits (227), Expect = 3e-23
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 13/102 (12%)

Query: 4   EVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA--------MQK----EGIIVRCIQ 50
           ++  +   H +   +   E  D   F ++ VVYEWA        M+     EG +VR I 
Sbjct: 894 KMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVIT 953

Query: 51  QLSELLRSIKDGAKIFGERDLPLKMDQAIQVIKRDIVFAPSL 92
            L E+ R +K  + I G   L +KM +A ++IKRDIVFA SL
Sbjct: 954 WLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASL 995

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	99.98
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	99.97
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	99.97

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=99.98  E-value=3.3e-33  Score=247.41  Aligned_cols=94  Identities=37%  Similarity=0.604  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHhCCCCCcc-hhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhC
Q psy13859          1 MNIEVESIEKKHGVERDKS-SEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFG   67 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~-~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG   67 (108)
                      +|++|++++.+||++++.+ ++|+++|+||||+|||+||+|            +|||||||||||+||||||++||++||
T Consensus       891 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g  970 (997)
T 4a4z_A          891 IYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIG  970 (997)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4789999999999998532 499999999999999999999            999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         68 ERDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        68 ~~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      |++|++||++|+++|||||||++||||
T Consensus       971 ~~~l~~k~~~a~~~i~R~iv~~~slyl  997 (997)
T 4a4z_A          971 NSTLHMKMSRAQELIKRDIVFAASLYL  997 (997)
T ss_dssp             CHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred             CHHHHHHHHHHHHHhcCCeeecccccC
Confidence            999999999999999999999999996

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.8e-33  Score=245.17  Aligned_cols=93  Identities=31%  Similarity=0.544  Sum_probs=89.6

Q ss_pred             ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859          1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE   68 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~   68 (108)
                      +|++|++++.+||++++++ +|+++|+|+||++||+||+|            +||||||+||||+||||||++||++|||
T Consensus       906 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~  984 (1010)
T 2xgj_A          906 IAAKIAKIMKDSKIEVVEK-DYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN  984 (1010)
T ss_dssp             HHHHHHHHHHHTTCCCCHH-HHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCCChh-HhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            4789999999999999986 99999999999999999999            9999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         69 RDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        69 ~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      ++|.+||++|+++|||||||++||||
T Consensus       985 ~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A          985 SSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp             HHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred             HHHHHHHHHHHHhccCCeEecccccC
Confidence            99999999999999999999999996

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-33  Score=252.00  Aligned_cols=93  Identities=31%  Similarity=0.544  Sum_probs=84.9

Q ss_pred             ChHHHHHHHHHhCCCCCcchhhhhhcchhHHHHHHHHhcc------------CCchhHHHHHHHHHHHHHHHHHhhhhCC
Q psy13859          1 MNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQ------------KEGIIVRCIQQLSELLRSIKDGAKIFGE   68 (108)
Q Consensus         1 ~a~~Ia~v~~~~~l~~~~~~~y~~~~~~~LmevVy~Wa~G------------~EGsIVR~irRL~ELlrql~~Aa~~iG~   68 (108)
                      +|++|++++.+||++++++ +|+++|+||||+|||+||+|            +||+||||||||+||||||++||++|||
T Consensus      1004 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~ 1082 (1108)
T 3l9o_A         1004 IAAKIAKIMKDSKIEVVEK-DYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN 1082 (1108)
T ss_dssp             HHHHHHHHHHHTTCSCHHH-HHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCC
T ss_pred             HHHHHHHHHHHhCCCCChH-HhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCC
Confidence            4789999999999999887 99999999999999999999            9999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCccccchhhh
Q psy13859         69 RDLPLKMDQAIQVIKRDIVFAPSLWT   94 (108)
Q Consensus        69 ~~L~~k~~~a~~~ikRdIVf~~SLYl   94 (108)
                      ++|++||++|+++|||||||++||||
T Consensus      1083 ~~l~~k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A         1083 SSLKEKMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred             HHHHHHHHHHHHHhcCCEEeeccccC
Confidence            99999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00