Psyllid ID: psy14485
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | 2.2.26 [Sep-21-2011] | |||||||
| A4G1F1 | 339 | Biotin synthase OS=Hermin | yes | N/A | 0.910 | 0.935 | 0.659 | 1e-135 | |
| A6SU66 | 339 | Biotin synthase OS=Janthi | yes | N/A | 0.910 | 0.935 | 0.659 | 1e-134 | |
| Q12D73 | 343 | Biotin synthase 2 OS=Pola | yes | N/A | 0.936 | 0.950 | 0.600 | 1e-126 | |
| B2JKH4 | 351 | Biotin synthase OS=Burkho | yes | N/A | 0.873 | 0.866 | 0.657 | 1e-126 | |
| Q21W43 | 349 | Biotin synthase OS=Rhodof | yes | N/A | 0.905 | 0.902 | 0.616 | 1e-125 | |
| Q146K5 | 360 | Biotin synthase OS=Burkho | yes | N/A | 0.873 | 0.844 | 0.631 | 1e-123 | |
| A1VUJ4 | 345 | Biotin synthase OS=Polaro | yes | N/A | 0.885 | 0.892 | 0.616 | 1e-123 | |
| B2SWS5 | 361 | Biotin synthase OS=Burkho | yes | N/A | 0.873 | 0.842 | 0.631 | 1e-123 | |
| Q1LS73 | 345 | Biotin synthase OS=Ralsto | yes | N/A | 0.951 | 0.959 | 0.598 | 1e-123 | |
| A3N520 | 336 | Biotin synthase OS=Burkho | yes | N/A | 0.902 | 0.934 | 0.621 | 1e-122 |
| >sp|A4G1F1|BIOB_HERAR Biotin synthase OS=Herminiimonas arsenicoxydans GN=bioB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 266/317 (83%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +D+V+ LFNLPFN+L+FRAQ VHR++FD +E+ELA LLSIKTGGC EDCGYCPQ+ Y
Sbjct: 20 WPVDDVLALFNLPFNELMFRAQTVHREHFDPSEVELATLLSIKTGGCPEDCGYCPQAARY 79
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E M+ EVK +G+E
Sbjct: 80 DTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEEMVREVKAMGME 139
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++TL VRNVGI
Sbjct: 140 TCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRIDTLARVRNVGIK 199
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+ +DPLEF+RT
Sbjct: 200 VCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDPIDPLEFVRT 259
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N + D +LL+
Sbjct: 260 VAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGNPEALADQELLE 319
Query: 329 KLGINTRNIKIKMKNNI 345
KLG++TR+ I + ++
Sbjct: 320 KLGMHTRSTAIDARCDV 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Herminiimonas arsenicoxydans (taxid: 204773) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 6 |
| >sp|A6SU66|BIOB_JANMA Biotin synthase OS=Janthinobacterium sp. (strain Marseille) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 262/317 (82%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +D+V+ LFNLPFNDL+FRAQ VHR+ FD E+ELA LLSIKTGGC EDCGYCPQ+ Y
Sbjct: 20 WPVDDVLALFNLPFNDLIFRAQTVHRENFDPTEVELATLLSIKTGGCPEDCGYCPQAARY 79
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E M+ EVK +GLE
Sbjct: 80 DTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEEMVREVKAMGLE 139
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++TL VR GI
Sbjct: 140 TCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRIDTLGRVRGAGIK 199
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+ +DPLEF+RT
Sbjct: 200 VCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDPIDPLEFVRT 259
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N + D +LL+
Sbjct: 260 VAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGNPEAMADQELLE 319
Query: 329 KLGINTRNIKIKMKNNI 345
KLG++TR+ I + ++
Sbjct: 320 KLGMHTRSTAIDARCDV 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Janthinobacterium sp. (strain Marseille) (taxid: 375286) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q12D73|BIOB2_POLSJ Biotin synthase 2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=bioB2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 260/328 (79%), Gaps = 2/328 (0%)
Query: 13 NSIKKNNAISSSQ--SLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSI 70
+S+++ A +++ L W+++++ L+ LPF DLLFRAQ+VHR++FDANE++L+ LLSI
Sbjct: 9 SSLRRAPAPTTAPQAPLRWQVEDIAALYELPFMDLLFRAQQVHREHFDANEVQLSTLLSI 68
Query: 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR 130
KTGGC EDCGYCPQSTH+ TE+ A+K++ + VI AA+ AK GATRFCMGAAWR K+R
Sbjct: 69 KTGGCAEDCGYCPQSTHFETEVKASKLMPLAEVIEAARAAKDQGATRFCMGAAWRSPKER 128
Query: 131 DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR 190
D++ + ++ EV+ +GLETC+TLGML QA LK GLDYYNHNLD++P+ YGDIISTR
Sbjct: 129 DMERVTEIVREVRSLGLETCMTLGMLQAEQAQALKDAGLDYYNHNLDSAPEFYGDIISTR 188
Query: 191 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250
Y++RL+TL +VR GIN+CCGGI+G+ ESR QRA LI QLANL+PYPESVPINNLV +
Sbjct: 189 TYQDRLDTLGHVRQAGINVCCGGIVGMGESRLQRAGLIAQLANLSPYPESVPINNLVPVA 248
Query: 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310
GTPL ++ LDP EF+RTIAVARITMP + +R+SAGR++M E QA CF AGANSIFYGD
Sbjct: 249 GTPLANTAPLDPFEFVRTIAVARITMPLTMVRLSAGREQMDEALQALCFAAGANSIFYGD 308
Query: 311 KLLTTDNTKTNDDSKLLKKLGINTRNIK 338
KLLTT N + + D +L ++LG+ T+ +
Sbjct: 309 KLLTTSNPQADRDRQLFERLGLKTQGAR 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2JKH4|BIOB_BURP8 Biotin synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 200/304 (65%), Positives = 248/304 (81%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
WK+ +V L+ LPFNDLLFRAQ+VHR++FDAN ++L+ LLSIKTGGC EDC YCPQS H+
Sbjct: 27 WKVADVAALYELPFNDLLFRAQQVHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHH 86
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A K++ +E V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLE
Sbjct: 87 ETGLKAEKLMEVEEVLAAARVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKSMGLE 146
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL++VR+ GIN
Sbjct: 147 TCVTLGMLEAHQAQALREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLEHVRDAGIN 206
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+GL ESR +RA LI QLAN+ PYPESVPINNLVQ++GTPL G+ LDP EF+RT
Sbjct: 207 VCCGGIVGLGESRRERAGLIAQLANMEPYPESVPINNLVQVEGTPLTGTEALDPFEFVRT 266
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL
Sbjct: 267 IAVARITMPRAMVRLSAGREQMDEALQAMCFLAGANSIFYGDQLLTTSNPQAEADRKLLA 326
Query: 329 KLGI 332
+LGI
Sbjct: 327 RLGI 330
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q21W43|BIOB_RHOFD Biotin synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 254/318 (79%), Gaps = 3/318 (0%)
Query: 9 SKESNSIKKNNA---ISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELA 65
S++S+++ + + I+ +S W L +V+ LF LPFNDL+F+AQ+ HR +F ++ELA
Sbjct: 6 SQQSSAVAFHPSAAPITLPESATWPLADVLALFELPFNDLMFQAQQTHRAHFPKGDVELA 65
Query: 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR 125
LLSIKTGGC EDC YCPQ+ Y+T + A KIL +E V+ AA++A++ GATRFCMGAAWR
Sbjct: 66 TLLSIKTGGCEEDCSYCPQAARYDTGVEAQKILELEQVLDAAREARASGATRFCMGAAWR 125
Query: 126 ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 185
K+RDL+ +E M+ VK++GLETC TLGML E QA RLK+ GLDYYNHNLD++P+ Y +
Sbjct: 126 SPKERDLEKVEAMVRGVKQLGLETCATLGMLEEGQADRLKQAGLDYYNHNLDSAPEFYSN 185
Query: 186 IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245
+ISTR+Y++RL+TL VR G+ ICCGGI+G+ ESR QRA LI QLANLNPYPESVP+N+
Sbjct: 186 VISTREYQDRLDTLGRVRQAGLKICCGGIVGMGESRQQRAGLIAQLANLNPYPESVPVNH 245
Query: 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 305
LVQ++GTPLYG LDP+EF+RTIAVARITMP +R+R+SAGR++MG+ QA CFLAGANS
Sbjct: 246 LVQVEGTPLYGIEPLDPIEFVRTIAVARITMPKARVRLSAGRRQMGDAVQAMCFLAGANS 305
Query: 306 IFYGDKLLTTDNTKTNDD 323
IFYGDKLLTT N + DD
Sbjct: 306 IFYGDKLLTTGNPEAGDD 323
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) (taxid: 338969) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q146K5|BIOB_BURXL Biotin synthase OS=Burkholderia xenovorans (strain LB400) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 192/304 (63%), Positives = 251/304 (82%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W++ ++++L+ LPFNDL+F+AQ+ HR++FDAN ++L+ LLSIKTGGC EDC YCPQS H+
Sbjct: 31 WRVADIVSLYELPFNDLMFQAQQTHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHH 90
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T + A K++ ++ V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLE
Sbjct: 91 DTGLQADKLMPVDEVLAAAKVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKAMGLE 150
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN
Sbjct: 151 TCVTLGMLETHQAQGLREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGIN 210
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+GL ESR +RA LI QLAN++PYPESVPINNLVQ++GTPL G+ +DP EF+RT
Sbjct: 211 VCCGGIVGLGESRRERAGLIAQLANMDPYPESVPINNLVQVEGTPLTGTEAIDPFEFVRT 270
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IA+ARITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL+
Sbjct: 271 IAIARITMPRAMVRLSAGREQMNEALQAMCFLAGANSIFYGDQLLTTSNPQAEADRKLLE 330
Query: 329 KLGI 332
+LGI
Sbjct: 331 RLGI 334
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia xenovorans (strain LB400) (taxid: 266265) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A1VUJ4|BIOB_POLNA Biotin synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 190/308 (61%), Positives = 245/308 (79%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W++ ++ L+ LPF DLLFRAQ+VHR FDAN+++L+ LLSIKTGGC EDCGYCPQS+H+
Sbjct: 29 WRVADIEALYALPFMDLLFRAQQVHRANFDANQVQLSTLLSIKTGGCAEDCGYCPQSSHF 88
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
TE+ A+K+++++ V+ AAQ AK GATRFCMGAAW K+RD++ + M+ EV+ +GLE
Sbjct: 89 ETEVKASKLMALDEVMAAAQAAKDQGATRFCMGAAWSRPKERDMERVTEMVREVRGLGLE 148
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML QA LK GLDYYNHNLD+SP+ YG IISTR Y++RL+TL+NVR GIN
Sbjct: 149 TCMTLGMLEAEQAQALKDAGLDYYNHNLDSSPEFYGSIISTRTYQDRLDTLENVRGAGIN 208
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ ESR QRA L+ QLANL PYPESVPINNLV ++GTPL + LDP EF+RT
Sbjct: 209 VCCGGIVGMGESRAQRAGLVAQLANLEPYPESVPINNLVAVEGTPLADTPPLDPFEFVRT 268
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARITMP + +R+SAGR++M E QA CF+AGANSIFYGD+LLTT N + + D +L
Sbjct: 269 IAVARITMPRTMVRLSAGREQMDEALQALCFMAGANSIFYGDRLLTTSNPQADKDRQLFA 328
Query: 329 KLGINTRN 336
+LG+ +
Sbjct: 329 RLGLKVQG 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2SWS5|BIOB_BURPP Biotin synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 192/304 (63%), Positives = 249/304 (81%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W++ +++ L+ LPFNDL+F+AQ+ HR++FDAN ++L+ LLSIKTGGC EDC YCPQS H+
Sbjct: 32 WRVADIVALYELPFNDLMFKAQQTHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHH 91
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T + A K++ ++ V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLE
Sbjct: 92 DTGLQADKLMPVDEVLAAAKVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKAMGLE 151
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN
Sbjct: 152 TCVTLGMLETHQAQGLREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGIN 211
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+GL ESR +RA LI QLAN+ PYPESVPINNLVQ++GTPL G+ +DP EF+RT
Sbjct: 212 VCCGGIVGLGESRRERAGLIAQLANMEPYPESVPINNLVQVEGTPLTGTEAIDPFEFVRT 271
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IA+ARITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL+
Sbjct: 272 IAIARITMPRAMVRLSAGREQMDEALQALCFLAGANSIFYGDQLLTTSNPQAEADRKLLE 331
Query: 329 KLGI 332
+LGI
Sbjct: 332 RLGI 335
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q1LS73|BIOB_RALME Biotin synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 198/331 (59%), Positives = 258/331 (77%)
Query: 2 SLKIIQSSKESNSIKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANE 61
++ I + S + A + + W++D+V LF LPFNDLLFRAQ+VHR++FDAN
Sbjct: 8 TVATISAEALRQSARNIAAAAPKEGDAWRVDDVAALFALPFNDLLFRAQQVHREHFDANT 67
Query: 62 IELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG 121
++L+ LLSIKTGGC EDCGYCPQS H++ + A K++ +E+V+ AA+ AK++GATRFCMG
Sbjct: 68 VQLSTLLSIKTGGCEEDCGYCPQSAHHDAGVKAEKLMDLEAVLDAAKAAKANGATRFCMG 127
Query: 122 AAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181
AAWRE K+R L+ + +M+ EVK +GLETC+TLGML QA RLK GLDYYNHNLDTSP+
Sbjct: 128 AAWREPKERHLEPVIDMVREVKAMGLETCVTLGMLKAEQAQRLKDAGLDYYNHNLDTSPE 187
Query: 182 LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESV 241
YG II+TR Y++RL+T+ +VR GIN+CCGGI+G+ E+R+ RA LI QLAN++PYPESV
Sbjct: 188 FYGKIITTRTYQDRLDTIGHVREAGINVCCGGIVGMGEAREARAGLIAQLANMDPYPESV 247
Query: 242 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 301
PINNLVQ++GTPL G+ LDP EF+RTIAVARITMP + +R+SAGR+ M E QA CF+A
Sbjct: 248 PINNLVQVEGTPLAGTEALDPFEFVRTIAVARITMPRAMVRLSAGREAMDEALQALCFMA 307
Query: 302 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 332
GANSIFYG+KLLTT N + + D LL +L I
Sbjct: 308 GANSIFYGEKLLTTGNPQADRDRALLARLDI 338
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A3N520|BIOB_BURP6 Biotin synthase OS=Burkholderia pseudomallei (strain 668) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 251/314 (79%)
Query: 21 ISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCG 80
+++ + W++ +VI L+ LPFNDLLFRAQ+ HR++FDAN I+L+ LLSIKTGGC EDCG
Sbjct: 15 VAAPAAPRWRVADVIALYELPFNDLLFRAQQTHREHFDANAIQLSTLLSIKTGGCEEDCG 74
Query: 81 YCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMIC 140
YC QS H++T + A K++ +++V+ AA+ AK +GATRFCMGAAWR KDR ++ I+ MI
Sbjct: 75 YCSQSAHHDTGLKAEKLMEVDAVLAAARTAKENGATRFCMGAAWRNPKDRHIEPIKEMIR 134
Query: 141 EVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLK 200
VK +GLETC+TLGML E+QA L + GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+
Sbjct: 135 GVKDMGLETCVTLGMLEEHQAKALAEAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLE 194
Query: 201 NVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 260
VR+ GIN+CCGGIIG+ ESR +RA LI QLAN+NPYPESVPINNLV I+GTPL + L
Sbjct: 195 RVRDAGINVCCGGIIGMGESRRERAGLIAQLANMNPYPESVPINNLVAIEGTPLENAQAL 254
Query: 261 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT 320
DP EF+RTIAVARITMP + +R+SAGR+++ + QA CFLAGANS+FYGD LLTT N +
Sbjct: 255 DPFEFVRTIAVARITMPKAMVRLSAGREQLDDAMQALCFLAGANSMFYGDVLLTTGNPRA 314
Query: 321 NDDSKLLKKLGINT 334
D KLL +LG++
Sbjct: 315 EADRKLLARLGMSA 328
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia pseudomallei (strain 668) (taxid: 320373) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| 329910730 | 336 | Biotin synthase [Oxalobacteraceae bacter | 0.954 | 0.988 | 0.644 | 1e-135 | |
| 134093392 | 339 | biotin synthase [Herminiimonas arsenicox | 0.910 | 0.935 | 0.659 | 1e-133 | |
| 152980099 | 339 | biotin synthetase [Janthinobacterium sp. | 0.910 | 0.935 | 0.659 | 1e-132 | |
| 445493867 | 349 | biotin synthase BioB [Janthinobacterium | 0.965 | 0.962 | 0.633 | 1e-131 | |
| 340789431 | 374 | biotin synthase [Collimonas fungivorans | 0.936 | 0.871 | 0.633 | 1e-130 | |
| 395760525 | 348 | biotin synthase [Janthinobacterium livid | 0.951 | 0.951 | 0.608 | 1e-127 | |
| 91787465 | 344 | biotin synthase [Polaromonas sp. JS666] | 0.936 | 0.947 | 0.600 | 1e-124 | |
| 254810651 | 343 | RecName: Full=Biotin synthase 2 | 0.936 | 0.950 | 0.600 | 1e-124 | |
| 186474939 | 351 | biotin synthase [Burkholderia phymatum S | 0.873 | 0.866 | 0.657 | 1e-124 | |
| 421750360 | 345 | biotin synthase [Cupriavidus necator HPC | 0.873 | 0.881 | 0.651 | 1e-124 |
| >gi|329910730|ref|ZP_08275370.1| Biotin synthase [Oxalobacteraceae bacterium IMCC9480] gi|327546098|gb|EGF31162.1| Biotin synthase [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 214/332 (64%), Positives = 267/332 (80%)
Query: 12 SNSIKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIK 71
S +I A + + W +++V+ LFNLPFN+LLFRAQ++HR++FD E+ELA LLSIK
Sbjct: 3 SQTIAFQAATPTIVASTWPVEDVLALFNLPFNELLFRAQQIHREHFDPTEVELATLLSIK 62
Query: 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD 131
TGGC EDCGYCPQ+ Y+T +TA KIL + +V+ AA++AK+ GATRFCMGAAWRE KDRD
Sbjct: 63 TGGCPEDCGYCPQAARYDTGVTAQKILPLATVLEAARQAKAHGATRFCMGAAWREPKDRD 122
Query: 132 LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRD 191
L+ +E M+ EVK +GLETC TLGML QA +LK GLDYYNHNLDT+P+ YG++ISTRD
Sbjct: 123 LEQVEEMVREVKALGLETCATLGMLGVGQAEKLKDAGLDYYNHNLDTAPEFYGNVISTRD 182
Query: 192 YENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251
Y++RL+TL VR GI +CCGGI+G+ ESR QRA L+ QLANL PYPESVP+N+LVQ++G
Sbjct: 183 YQHRLDTLGRVRGAGIKVCCGGIVGMGESRLQRAGLVAQLANLTPYPESVPVNHLVQVEG 242
Query: 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311
TPLYGS LDPLEF+RTIAVARITMPT+R+R+SAGR++MGE QA CFLAGANSIFYGDK
Sbjct: 243 TPLYGSEALDPLEFVRTIAVARITMPTARVRLSAGRRQMGEAVQAMCFLAGANSIFYGDK 302
Query: 312 LLTTDNTKTNDDSKLLKKLGINTRNIKIKMKN 343
LLTT N + +D LL KLG+ TR KI+ +
Sbjct: 303 LLTTGNPEVEEDQALLAKLGMRTRATKIEAEG 334
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093392|ref|YP_001098467.1| biotin synthase [Herminiimonas arsenicoxydans] gi|254810719|sp|A4G1F1.1|BIOB_HERAR RecName: Full=Biotin synthase gi|133737295|emb|CAL60338.1| Biotin synthase [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 266/317 (83%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +D+V+ LFNLPFN+L+FRAQ VHR++FD +E+ELA LLSIKTGGC EDCGYCPQ+ Y
Sbjct: 20 WPVDDVLALFNLPFNELMFRAQTVHREHFDPSEVELATLLSIKTGGCPEDCGYCPQAARY 79
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E M+ EVK +G+E
Sbjct: 80 DTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEEMVREVKAMGME 139
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++TL VRNVGI
Sbjct: 140 TCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRIDTLARVRNVGIK 199
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+ +DPLEF+RT
Sbjct: 200 VCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDPIDPLEFVRT 259
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N + D +LL+
Sbjct: 260 VAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGNPEALADQELLE 319
Query: 329 KLGINTRNIKIKMKNNI 345
KLG++TR+ I + ++
Sbjct: 320 KLGMHTRSTAIDARCDV 336
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980099|ref|YP_001351813.1| biotin synthetase [Janthinobacterium sp. Marseille] gi|254810721|sp|A6SU66.1|BIOB_JANMA RecName: Full=Biotin synthase gi|151280176|gb|ABR88586.1| biotin synthetase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 209/317 (65%), Positives = 262/317 (82%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +D+V+ LFNLPFNDL+FRAQ VHR+ FD E+ELA LLSIKTGGC EDCGYCPQ+ Y
Sbjct: 20 WPVDDVLALFNLPFNDLIFRAQTVHRENFDPTEVELATLLSIKTGGCPEDCGYCPQAARY 79
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E M+ EVK +GLE
Sbjct: 80 DTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEEMVREVKAMGLE 139
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++TL VR GI
Sbjct: 140 TCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRIDTLGRVRGAGIK 199
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+ +DPLEF+RT
Sbjct: 200 VCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGTDPIDPLEFVRT 259
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N + D +LL+
Sbjct: 260 VAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGNPEAMADQELLE 319
Query: 329 KLGINTRNIKIKMKNNI 345
KLG++TR+ I + ++
Sbjct: 320 KLGMHTRSTAIDARCDV 336
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445493867|ref|ZP_21460911.1| biotin synthase BioB [Janthinobacterium sp. HH01] gi|444790028|gb|ELX11575.1| biotin synthase BioB [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 213/336 (63%), Positives = 262/336 (77%)
Query: 1 MSLKIIQSSKESNSIKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDAN 60
MSL +Q K + AI+ + W LD+V+ LF+LPFNDL+FRAQ+ HR F
Sbjct: 1 MSLNTLQEPKTVALHRPTAAITLPPAATWPLDDVMALFDLPFNDLMFRAQETHRANFPDG 60
Query: 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCM 120
++ELA LLSIKTGGC EDCGYCPQ+ Y+T + A KIL I++V+ AA++AK +GATRFCM
Sbjct: 61 DVELATLLSIKTGGCEEDCGYCPQAARYDTGVEAKKILDIDTVLDAAKQAKDNGATRFCM 120
Query: 121 GAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180
GAAWR KDRD+D +E M+ EVK +GLETC TLGML E QA RLK GLDYYNHNLDT+P
Sbjct: 121 GAAWRSPKDRDMDKVEEMVREVKALGLETCATLGMLEEKQAERLKAAGLDYYNHNLDTAP 180
Query: 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 240
+ Y ++ISTR+Y++RL+TL +R G+ +CCGGI+G+ ESR QRA LI QLANLNPYPES
Sbjct: 181 EFYDNVISTREYQDRLDTLGRIREAGLKVCCGGIVGMGESRLQRAGLIAQLANLNPYPES 240
Query: 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 300
VP+N+LVQ++GTPLYG LDP EF+RTIAVARITMP +R+R+SAGR++MGE QA CFL
Sbjct: 241 VPVNHLVQVEGTPLYGMDPLDPFEFVRTIAVARITMPKARVRLSAGRRQMGEAVQAMCFL 300
Query: 301 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336
AGANSIFYGDKLLTTDN + DD LL KLG+ TR
Sbjct: 301 AGANSIFYGDKLLTTDNPEAEDDRTLLNKLGLKTRG 336
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789431|ref|YP_004754896.1| biotin synthase [Collimonas fungivorans Ter331] gi|340554698|gb|AEK64073.1| Biotin synthase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 207/327 (63%), Positives = 268/327 (81%), Gaps = 1/327 (0%)
Query: 10 KESNSIKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLS 69
+ +NSI + + + + W + V++LFNLPFN+L+F+AQ++HR+ FD NE+ELA LLS
Sbjct: 31 QPANSITQKPMVLPADAK-WPVQTVLDLFNLPFNELMFKAQQIHRENFDPNEVELATLLS 89
Query: 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD 129
IKTGGC EDCGYCPQ+ Y+T +TA KIL +++V+ AA++AK+ GATRFCMGAAWRE KD
Sbjct: 90 IKTGGCPEDCGYCPQAARYDTGVTAQKILPLDTVLEAARQAKAHGATRFCMGAAWREPKD 149
Query: 130 RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIST 189
RDL+ +E M+ EVK +GLETC TLGML E QA RLK GLDYYNHNLDT+P++YGDII+T
Sbjct: 150 RDLEKVEEMVREVKALGLETCATLGMLGEGQAERLKGAGLDYYNHNLDTAPEIYGDIITT 209
Query: 190 RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249
RDY+NRL+TL +VR GI +CCGGI+G+ ESR QRA L+ QLANL PYPESVP+NNLVQ+
Sbjct: 210 RDYQNRLDTLDSVRGAGIKVCCGGIVGMGESRLQRAGLVAQLANLEPYPESVPVNNLVQV 269
Query: 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309
+GTPL+G +D EF+RT+AVARITMP +R+R+SAGR++MGE Q+ CFLAGANSIFYG
Sbjct: 270 EGTPLHGIDPIDLFEFVRTVAVARITMPKARVRLSAGRRQMGEAIQSLCFLAGANSIFYG 329
Query: 310 DKLLTTDNTKTNDDSKLLKKLGINTRN 336
DKLLTT N + +D LL+KLG+++R+
Sbjct: 330 DKLLTTGNPEVEEDRALLEKLGMHSRS 356
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395760525|ref|ZP_10441194.1| biotin synthase [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 202/332 (60%), Positives = 264/332 (79%), Gaps = 1/332 (0%)
Query: 6 IQSSKESNSIKKNNA-ISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIEL 64
+Q + ++ + + A I+ ++ W + +V+ LF+LPFNDL+F+AQ+ HR F ++EL
Sbjct: 4 VQEAAKTVELHRPAARITVPEAATWPVADVLALFDLPFNDLMFKAQQTHRINFPDGDVEL 63
Query: 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAW 124
A LLSIKTGGC EDCGYCPQ+ Y+T + A KIL I++V+ AA++AK++GATRFCMGAAW
Sbjct: 64 ATLLSIKTGGCEEDCGYCPQAARYDTGVEAKKILDIDTVLDAARQAKANGATRFCMGAAW 123
Query: 125 RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYG 184
R K+RD++ +E M+ +VK +GLETC TLGML E QA+RLK GLD+YNHNLDT+P+ Y
Sbjct: 124 RSPKERDMEKVEEMVTKVKALGLETCATLGMLEEGQAHRLKNAGLDFYNHNLDTAPEFYD 183
Query: 185 DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 244
++ISTR+Y++RL+TL VR G+ +CCGGI+G+ E+R QRA LI QLANLNPYPESVP+N
Sbjct: 184 NVISTREYQDRLDTLGRVREAGLKVCCGGIVGMGETRLQRAGLIAQLANLNPYPESVPVN 243
Query: 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGAN 304
+LVQ++GTPLYG LDP EF+RTIAVARITMP +R+R+SAGR++MGE QA CFLAGAN
Sbjct: 244 HLVQVEGTPLYGLEALDPFEFVRTIAVARITMPKARVRLSAGRRQMGEAVQAMCFLAGAN 303
Query: 305 SIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336
SIFYGDKLLTTDN + DD LL KLG+ TR
Sbjct: 304 SIFYGDKLLTTDNPEAEDDRTLLNKLGLQTRG 335
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|91787465|ref|YP_548417.1| biotin synthase [Polaromonas sp. JS666] gi|91696690|gb|ABE43519.1| biotin synthase [Polaromonas sp. JS666] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 260/328 (79%), Gaps = 2/328 (0%)
Query: 13 NSIKKNNAISSSQ--SLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSI 70
+S+++ A +++ L W+++++ L+ LPF DLLFRAQ+VHR++FDANE++L+ LLSI
Sbjct: 10 SSLRRAPAPTTAPQAPLRWQVEDIAALYELPFMDLLFRAQQVHREHFDANEVQLSTLLSI 69
Query: 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR 130
KTGGC EDCGYCPQSTH+ TE+ A+K++ + VI AA+ AK GATRFCMGAAWR K+R
Sbjct: 70 KTGGCAEDCGYCPQSTHFETEVKASKLMPLAEVIEAARAAKDQGATRFCMGAAWRSPKER 129
Query: 131 DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR 190
D++ + ++ EV+ +GLETC+TLGML QA LK GLDYYNHNLD++P+ YGDIISTR
Sbjct: 130 DMERVTEIVREVRSLGLETCMTLGMLQAEQAQALKDAGLDYYNHNLDSAPEFYGDIISTR 189
Query: 191 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250
Y++RL+TL +VR GIN+CCGGI+G+ ESR QRA LI QLANL+PYPESVPINNLV +
Sbjct: 190 TYQDRLDTLGHVRQAGINVCCGGIVGMGESRLQRAGLIAQLANLSPYPESVPINNLVPVA 249
Query: 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310
GTPL ++ LDP EF+RTIAVARITMP + +R+SAGR++M E QA CF AGANSIFYGD
Sbjct: 250 GTPLANTAPLDPFEFVRTIAVARITMPLTMVRLSAGREQMDEALQALCFAAGANSIFYGD 309
Query: 311 KLLTTDNTKTNDDSKLLKKLGINTRNIK 338
KLLTT N + + D +L ++LG+ T+ +
Sbjct: 310 KLLTTSNPQADRDRQLFERLGLKTQGAR 337
|
Source: Polaromonas sp. JS666 Species: Polaromonas sp. JS666 Genus: Polaromonas Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|254810651|sp|Q12D73.2|BIOB2_POLSJ RecName: Full=Biotin synthase 2 | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 197/328 (60%), Positives = 260/328 (79%), Gaps = 2/328 (0%)
Query: 13 NSIKKNNAISSSQ--SLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSI 70
+S+++ A +++ L W+++++ L+ LPF DLLFRAQ+VHR++FDANE++L+ LLSI
Sbjct: 9 SSLRRAPAPTTAPQAPLRWQVEDIAALYELPFMDLLFRAQQVHREHFDANEVQLSTLLSI 68
Query: 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR 130
KTGGC EDCGYCPQSTH+ TE+ A+K++ + VI AA+ AK GATRFCMGAAWR K+R
Sbjct: 69 KTGGCAEDCGYCPQSTHFETEVKASKLMPLAEVIEAARAAKDQGATRFCMGAAWRSPKER 128
Query: 131 DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR 190
D++ + ++ EV+ +GLETC+TLGML QA LK GLDYYNHNLD++P+ YGDIISTR
Sbjct: 129 DMERVTEIVREVRSLGLETCMTLGMLQAEQAQALKDAGLDYYNHNLDSAPEFYGDIISTR 188
Query: 191 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250
Y++RL+TL +VR GIN+CCGGI+G+ ESR QRA LI QLANL+PYPESVPINNLV +
Sbjct: 189 TYQDRLDTLGHVRQAGINVCCGGIVGMGESRLQRAGLIAQLANLSPYPESVPINNLVPVA 248
Query: 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310
GTPL ++ LDP EF+RTIAVARITMP + +R+SAGR++M E QA CF AGANSIFYGD
Sbjct: 249 GTPLANTAPLDPFEFVRTIAVARITMPLTMVRLSAGREQMDEALQALCFAAGANSIFYGD 308
Query: 311 KLLTTDNTKTNDDSKLLKKLGINTRNIK 338
KLLTT N + + D +L ++LG+ T+ +
Sbjct: 309 KLLTTSNPQADRDRQLFERLGLKTQGAR 336
|
Source: Polaromonas sp. JS666 Species: Polaromonas sp. JS666 Genus: Polaromonas Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|186474939|ref|YP_001856409.1| biotin synthase [Burkholderia phymatum STM815] gi|254810620|sp|B2JKH4.1|BIOB_BURP8 RecName: Full=Biotin synthase gi|184191398|gb|ACC69363.1| biotin synthase [Burkholderia phymatum STM815] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 200/304 (65%), Positives = 248/304 (81%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
WK+ +V L+ LPFNDLLFRAQ+VHR++FDAN ++L+ LLSIKTGGC EDC YCPQS H+
Sbjct: 27 WKVADVAALYELPFNDLLFRAQQVHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHH 86
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A K++ +E V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLE
Sbjct: 87 ETGLKAEKLMEVEEVLAAARVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKSMGLE 146
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL++VR+ GIN
Sbjct: 147 TCVTLGMLEAHQAQALREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLEHVRDAGIN 206
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+GL ESR +RA LI QLAN+ PYPESVPINNLVQ++GTPL G+ LDP EF+RT
Sbjct: 207 VCCGGIVGLGESRRERAGLIAQLANMEPYPESVPINNLVQVEGTPLTGTEALDPFEFVRT 266
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL
Sbjct: 267 IAVARITMPRAMVRLSAGREQMDEALQAMCFLAGANSIFYGDQLLTTSNPQAEADRKLLA 326
Query: 329 KLGI 332
+LGI
Sbjct: 327 RLGI 330
|
Source: Burkholderia phymatum STM815 Species: Burkholderia phymatum Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|421750360|ref|ZP_16187599.1| biotin synthase [Cupriavidus necator HPC(L)] gi|409770595|gb|EKN53193.1| biotin synthase [Cupriavidus necator HPC(L)] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/304 (65%), Positives = 249/304 (81%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +D V LF LPFNDLLFRAQ+VHR++FDAN ++L+ LLSIKTGGC EDCGYCPQS H+
Sbjct: 35 WTVDAVAALFALPFNDLLFRAQQVHREHFDANTVQLSTLLSIKTGGCEEDCGYCPQSAHH 94
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+ + A K+++++ V+ AA+ AK++GATRFCMGAAWR KDR L+ + +M+ EVK +GLE
Sbjct: 95 DAGVKAGKLMALDEVLDAARTAKANGATRFCMGAAWRSPKDRHLEPVIDMVREVKAMGLE 154
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLGML QA RLK GLDYYNHNLDTSP+ YG+IISTR Y++RL+T+ +VR+ GIN
Sbjct: 155 TCVTLGMLRAEQAQRLKDAGLDYYNHNLDTSPEFYGEIISTRTYQDRLDTIGHVRDAGIN 214
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+CCGGI+G+ E+R+ RA LI QLAN++PYPESVPINNLVQ++GTPL G++ LDP EF+RT
Sbjct: 215 VCCGGIVGMGETREARAGLIAQLANMDPYPESVPINNLVQVEGTPLAGTAPLDPFEFVRT 274
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARITMP + +R+SAGR+ M E QA CFLAGANSIFYGDKLLTT N + D LL
Sbjct: 275 IAVARITMPRAMVRLSAGREAMDEALQALCFLAGANSIFYGDKLLTTGNPQAERDRALLG 334
Query: 329 KLGI 332
+LGI
Sbjct: 335 RLGI 338
|
Source: Cupriavidus necator HPC(L) Species: Cupriavidus sp. HPC(L) Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| UNIPROTKB|P12996 | 346 | bioB "biotin synthase monomer" | 0.870 | 0.875 | 0.508 | 5.4e-79 | |
| TIGR_CMR|SO_2740 | 350 | SO_2740 "biotin synthase" [She | 0.870 | 0.865 | 0.498 | 2.3e-78 | |
| UNIPROTKB|Q9KSZ4 | 350 | bioB "Biotin synthase" [Vibrio | 0.870 | 0.865 | 0.501 | 3.8e-78 | |
| TIGR_CMR|VC_1112 | 350 | VC_1112 "biotin synthase" [Vib | 0.870 | 0.865 | 0.501 | 3.8e-78 | |
| TIGR_CMR|CBU_1007 | 321 | CBU_1007 "biotin synthase" [Co | 0.816 | 0.884 | 0.510 | 1.7e-75 | |
| TIGR_CMR|CPS_2594 | 346 | CPS_2594 "biotin synthase" [Co | 0.870 | 0.875 | 0.498 | 2.1e-75 | |
| TIGR_CMR|NSE_0612 | 325 | NSE_0612 "biotin synthase" [Ne | 0.873 | 0.935 | 0.453 | 1.4e-71 | |
| TIGR_CMR|ECH_0352 | 326 | ECH_0352 "biotin synthase" [Eh | 0.870 | 0.929 | 0.455 | 6.1e-71 | |
| TIGR_CMR|APH_0218 | 322 | APH_0218 "biotin synthase" [An | 0.870 | 0.940 | 0.452 | 1.8e-69 | |
| TIGR_CMR|SPO_3338 | 318 | SPO_3338 "biotin synthase" [Ru | 0.870 | 0.952 | 0.445 | 8.2e-67 |
| UNIPROTKB|P12996 bioB "biotin synthase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 154/303 (50%), Positives = 204/303 (67%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 7 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 66
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 67 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 126
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
C+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+
Sbjct: 127 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
L E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG +L +
Sbjct: 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 306
Query: 329 KLG 331
KLG
Sbjct: 307 KLG 309
|
|
| TIGR_CMR|SO_2740 SO_2740 "biotin synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 151/303 (49%), Positives = 201/303 (66%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
WK +E+ +A +HR+ +D NE++++ LLSIKTG C EDC YCPQS Y
Sbjct: 10 WKREEIEALFALPMNDLLFKAHSIHREEYDPNEVQISRLLSIKTGACPEDCKYCPQSARY 69
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
+T + ++L++E+V+T A+ AK+ GA+RFCMGAAWR KD+D+ ++ M+ EVK +G+E
Sbjct: 70 DTGLEKERLLAMETVLTEARSAKAAGASRFCMGAAWRNPKDKDMPYLKQMVQEVKALGME 129
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
TC+TLGML+ QA L + GLDYYNHNLDTSP+ YGD+I+TR Y+NRL+TL +VR
Sbjct: 130 TCMTLGMLSAEQANELAEAGLDYYNHNLDTSPEYYGDVITTRTYQNRLDTLSHVRASGMK 189
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+ E RA L+ QLANL +P+SVPIN LV++ GTP LDPLEF+RT
Sbjct: 190 VCSGGIVGMGEKATDRAGLLQQLANLPQHPDSVPINMLVKVAGTPFEKLDDLDPLEFVRT 249
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MP SR+R+SAGR+ M + QA CF AGANSIFYG L +
Sbjct: 250 IAVARILMPLSRVRLSAGRENMSDELQAMCFFAGANSIFYGCKLLTTPNPEESDDMGLFR 309
Query: 329 KLG 331
+LG
Sbjct: 310 RLG 312
|
|
| UNIPROTKB|Q9KSZ4 bioB "Biotin synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 152/303 (50%), Positives = 202/303 (66%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W + EV AQ+VHR + N ++++ LLSIKTG C EDC YCPQS HY
Sbjct: 7 WTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQSAHY 66
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T++ +++ +E V+ AAQKAK+ G+TRFCMGAAW+ K+RD+ ++ MI VK +GLE
Sbjct: 67 RTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNPKERDMPLLKEMIRGVKDMGLE 126
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
TC+TLGML +QA +L + GLDYYNHNLDTSP+ YG+II+TR Y++RL+TL +VR+
Sbjct: 127 TCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVRDAGMK 186
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+ ES + RA L+ +LANL +PESVPIN LV++KGTPL ++P +F+R
Sbjct: 187 ICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLEQVDDVEPFDFVRL 246
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MP S +R+SAGR++M E QA CF+AGANSIFYG L K
Sbjct: 247 IAVARIMMPKSAVRLSAGREKMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSDMLLFK 306
Query: 329 KLG 331
KLG
Sbjct: 307 KLG 309
|
|
| TIGR_CMR|VC_1112 VC_1112 "biotin synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 152/303 (50%), Positives = 202/303 (66%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W + EV AQ+VHR + N ++++ LLSIKTG C EDC YCPQS HY
Sbjct: 7 WTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQSAHY 66
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T++ +++ +E V+ AAQKAK+ G+TRFCMGAAW+ K+RD+ ++ MI VK +GLE
Sbjct: 67 RTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNPKERDMPLLKEMIRGVKDMGLE 126
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
TC+TLGML +QA +L + GLDYYNHNLDTSP+ YG+II+TR Y++RL+TL +VR+
Sbjct: 127 TCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVRDAGMK 186
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+ ES + RA L+ +LANL +PESVPIN LV++KGTPL ++P +F+R
Sbjct: 187 ICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLEQVDDVEPFDFVRL 246
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MP S +R+SAGR++M E QA CF+AGANSIFYG L K
Sbjct: 247 IAVARIMMPKSAVRLSAGREKMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSDMLLFK 306
Query: 329 KLG 331
KLG
Sbjct: 307 KLG 309
|
|
| TIGR_CMR|CBU_1007 CBU_1007 "biotin synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 145/284 (51%), Positives = 190/284 (66%)
Query: 48 RAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAA 107
+A + HR +FD ++EL L SIKTG C EDC YCPQS HY T++ K++++E+V+ A
Sbjct: 25 KAYETHRSHFDVRDMELCTLSSIKTGTCPEDCAYCPQSGHYKTDVEREKLINLEAVLEQA 84
Query: 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV 167
+ AK +GA RFCMGAAWR R+L + MI VK +GLETC+TLGML++ QA +LK+
Sbjct: 85 KVAKENGARRFCMGAAWRSPPKRELPKVLEMIKSVKALGLETCVTLGMLDQEQALQLKEA 144
Query: 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 227
GLD+YNHNLDTSP+ Y II+TR Y++R+ TLKNVRN + ESR R +L
Sbjct: 145 GLDFYNHNLDTSPEFYKKIITTRTYQDRMETLKNVRNAGINVCCGGILGMGESRADRIQL 204
Query: 228 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 287
+ +L L P S+PIN L+ IKGTPL + +DP EFI+TIA+ R+ PTS IR+SAGR
Sbjct: 205 LLELYQLPEPPTSIPINQLIPIKGTPLENTKAIDPFEFIKTIAITRLLFPTSVIRLSAGR 264
Query: 288 KEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 331
+ M + QA+CF+AGANSIFYG LLKKLG
Sbjct: 265 EAMSDELQAWCFMAGANSIFYGDKLLTAKNPGQNRDVNLLKKLG 308
|
|
| TIGR_CMR|CPS_2594 CPS_2594 "biotin synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 151/303 (49%), Positives = 195/303 (64%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L EV +AQ +HR+ F+ NE++++ LLSIKTG C EDC YC QS
Sbjct: 9 WNLKEVEALFAMPFNDLMFKAQTIHRENFNPNEVQVSTLLSIKTGACPEDCKYCSQSARN 68
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T++ +L++E V+ AAQ+AK G+TRFCMGAAWR K+RD+ + +M+ VK +G+E
Sbjct: 69 KTDLEKESLLAVEKVLEAAQRAKEMGSTRFCMGAAWRNPKERDMPYVLDMVKSVKALGME 128
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
TC+TLGML+ +QA +L GLDYYNHNLDTSP+ Y II+TR +++RL+TL NVR+
Sbjct: 129 TCMTLGMLSGDQADQLNGAGLDYYNHNLDTSPEHYNQIITTRTFQDRLDTLSNVRSAGMK 188
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
L E R+ L+ QLANLNP PESVPIN LV+++GTPL L+ +FIR
Sbjct: 189 VCSGGIVGLGEKAVDRSSLLIQLANLNPQPESVPINMLVKVEGTPLADIDDLESFDFIRC 248
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MP S +R+SAGR M E QA CFLAGANSIFYG L +
Sbjct: 249 IAVARIMMPHSHVRLSAGRTAMNEQMQAMCFLAGANSIFYGCKLLTAENPETNQDIALFE 308
Query: 329 KLG 331
KLG
Sbjct: 309 KLG 311
|
|
| TIGR_CMR|NSE_0612 NSE_0612 "biotin synthase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 138/304 (45%), Positives = 192/304 (63%)
Query: 28 IWKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 87
+W+ E AQ VHR+ F NE++LA+LLS+KTGGC E+C YCPQS H
Sbjct: 4 VWQFSEAEELFHLPFLDLLYSAQHVHRENFPHNEVQLAMLLSVKTGGCPENCSYCPQSAH 63
Query: 88 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL 147
Y+T + ++ +E V+ AA++A GATRFC+GAAWR + +DLD + MI +KK+GL
Sbjct: 64 YDTGLRKEPVMHVEKVLEAAKRAVELGATRFCIGAAWRGPRGKDLDIVCEMISRIKKLGL 123
Query: 148 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXX 207
ETC +LG+L+ QA LK GLD+YNHN+DTS + Y II+TR + +R+ TL+NV
Sbjct: 124 ETCASLGLLSYEQAVSLKAAGLDFYNHNIDTSQEYYSKIITTRRFSDRIETLENVAKAGL 183
Query: 208 XXXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 267
+ ES + R +++ +L++L+ PES+PIN L+ I GTPL + +DPL+F+R
Sbjct: 184 KICSGGILGMGESNEDRIKMLVELSHLSFPPESIPINKLIPIPGTPLAEKNAVDPLDFVR 243
Query: 268 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLL 327
IA+ARI P S +R+SAGR+ M + Q CF+AGANSIFYG KLL
Sbjct: 244 IIALARIMFPKSYVRLSAGRESMSDELQTLCFIAGANSIFYGEKLLTSANSDPESDEKLL 303
Query: 328 KKLG 331
KLG
Sbjct: 304 LKLG 307
|
|
| TIGR_CMR|ECH_0352 ECH_0352 "biotin synthase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 138/303 (45%), Positives = 191/303 (63%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W+LDE++ R+ HR++F+ NEI+LA LL+IKTGGC E+C YC QS HY
Sbjct: 11 WQLDEILELFNTPFNDLILRSHLTHRQFFNNNEIQLAALLNIKTGGCPENCRYCSQSAHY 70
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T++ +L +E++ A Q AK+ GA RFC AAWR+L+D+D++ I N+I +K LE
Sbjct: 71 KTDLQKEALLDVENIKKAIQTAKNSGADRFCFAAAWRQLRDKDIEYICNIINLIKSEKLE 130
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
+C +LGM+ +QA +LK GLD+YNHN+DTS Y ++ +TR+Y++RL +L N+
Sbjct: 131 SCASLGMITLDQAKKLKNAGLDFYNHNIDTSRDFYSNVTTTRNYDDRLASLNNIYEAGIN 190
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
L ES + RA+++ LANL +P SVPIN LV IKGTP + +D ++FI+T
Sbjct: 191 ICSGGILGLGESIEDRAKMLLTLANLKEHPRSVPINRLVPIKGTPFENNIKVDNIDFIKT 250
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAV RI MP S +R++AGRK+M E QA C AGANSIFYG LL
Sbjct: 251 IAVTRILMPKSYVRLAAGRKDMSEEMQALCLFAGANSIFYGEKLLTTPNSNCDDDKNLLS 310
Query: 329 KLG 331
KLG
Sbjct: 311 KLG 313
|
|
| TIGR_CMR|APH_0218 APH_0218 "biotin synthase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 137/303 (45%), Positives = 185/303 (61%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L+E + +A VHR+YF NE+++ L +IK GGC E+C YC QS H
Sbjct: 6 WTLEETLELFGLPFNDLLFKAHMVHREYFRHNEVQVCALANIKAGGCPENCCYCSQSAHN 65
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T +T + S+E V TAA++AK G RFC AAWR L DRD+D I + +K+ GLE
Sbjct: 66 KTGLTKKGLSSVEEVRTAARRAKDVGVHRFCFAAAWRNLHDRDVDRICEFVKAIKEEGLE 125
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
+C +LGML QA +LK+ GLD+YNHN+DTS Y +I++TR Y+ RL+T+ NV+
Sbjct: 126 SCASLGMLKLEQAQKLKEAGLDFYNHNVDTSRAYYHNIVTTRTYDERLDTINNVQEAGIN 185
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+ ES + RA+++ LANL +P SVPIN LV KGTPL G+ ++ ++F+RT
Sbjct: 186 VCCGGILGMGESTEDRAQMLLTLANLKQHPRSVPINRLVAFKGTPLEGAKKVNSVDFVRT 245
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MP S +R++AGR +M E A CF AGANSIFYG LL
Sbjct: 246 IAVARIMMPASYVRLAAGRSDMTEEMHALCFFAGANSIFYGEQLLTTENATPEFDQNLLS 305
Query: 329 KLG 331
+LG
Sbjct: 306 RLG 308
|
|
| TIGR_CMR|SPO_3338 SPO_3338 "biotin synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 136/305 (44%), Positives = 186/305 (60%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W +DEV RA VHR + ++I+ A LLSIKTGGC EDC YCPQS H+
Sbjct: 9 WSVDEVEALLRLPLLDLVGRANGVHRAHHAPDDIQKASLLSIKTGGCPEDCAYCPQSAHH 68
Query: 89 N-TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKKIG 146
E+T K+++ + V++ A++A+ GA RFCMGAAWR+++D + DN+ M+ V+ +G
Sbjct: 69 REVELTREKLMNPDHVVSLARRAQRAGAERFCMGAAWRQVRDGAEFDNVLAMVRGVRALG 128
Query: 147 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVX 206
+E C+TLGML +QA RL + GL YNHNLDTSP+ YG II TR Y++RL+TL R+
Sbjct: 129 MEACVTLGMLRPHQAQRLAEAGLTAYNHNLDTSPEFYGQIIGTRTYQDRLDTLAYCRDAG 188
Query: 207 XXXXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFI 266
+ ES RA ++ LAN P+PESVPIN L+ I+GTPL + + +
Sbjct: 189 IELCCGGIIGMGESLRDRAAMLQVLANFAPHPESVPINALIPIEGTPLAHRERVGIFDLV 248
Query: 267 RTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKL 326
R +A ARI MP +R+R+SAGR + QA CFLAGANS+FYG ++L
Sbjct: 249 RMVATARIIMPLTRVRLSAGRSDFSAAEQALCFLAGANSVFYGDVLLTAPNAGTGADAEL 308
Query: 327 LKKLG 331
LG
Sbjct: 309 FAALG 313
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1YNS2 | BIOB_BURA4 | 2, ., 8, ., 1, ., 6 | 0.6063 | 0.9051 | 0.9292 | yes | N/A |
| B2SWS5 | BIOB_BURPP | 2, ., 8, ., 1, ., 6 | 0.6315 | 0.8735 | 0.8421 | yes | N/A |
| A3N520 | BIOB_BURP6 | 2, ., 8, ., 1, ., 6 | 0.6210 | 0.9022 | 0.9345 | yes | N/A |
| B1Y502 | BIOB_LEPCP | 2, ., 8, ., 1, ., 6 | 0.6089 | 0.8965 | 0.9043 | yes | N/A |
| Q21W43 | BIOB_RHOFD | 2, ., 8, ., 1, ., 6 | 0.6163 | 0.9051 | 0.9025 | yes | N/A |
| Q1BT34 | BIOB_BURCA | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8735 | 0.8967 | yes | N/A |
| Q0AE72 | BIOB_NITEC | 2, ., 8, ., 1, ., 6 | 0.6095 | 0.9051 | 0.9319 | yes | N/A |
| Q2T1Q4 | BIOB_BURTA | 2, ., 8, ., 1, ., 6 | 0.6372 | 0.8793 | 0.9107 | yes | N/A |
| B4E9L4 | BIOB_BURCJ | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8735 | 0.8967 | yes | N/A |
| A6SU66 | BIOB_JANMA | 2, ., 8, ., 1, ., 6 | 0.6593 | 0.9109 | 0.9351 | yes | N/A |
| Q477A1 | BIOB_CUPPJ | 2, ., 8, ., 1, ., 6 | 0.6381 | 0.8735 | 0.8888 | yes | N/A |
| B2UDA1 | BIOB_RALPJ | 2, ., 8, ., 1, ., 6 | 0.6118 | 0.8735 | 0.8467 | yes | N/A |
| Q0VMD0 | BIOB_ALCBS | 2, ., 8, ., 1, ., 6 | 0.5868 | 0.8764 | 0.7963 | yes | N/A |
| Q63Y25 | BIOB_BURPS | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8965 | 0.9285 | yes | N/A |
| Q1GZA6 | BIOB_METFK | 2, ., 8, ., 1, ., 6 | 0.6065 | 0.8764 | 0.9104 | yes | N/A |
| Q7VVF1 | BIOB_BORPE | 2, ., 8, ., 1, ., 6 | 0.6051 | 0.8879 | 0.9223 | yes | N/A |
| Q7WB85 | BIOB_BORPA | 2, ., 8, ., 1, ., 6 | 0.6064 | 0.8908 | 0.9253 | yes | N/A |
| Q12F39 | BIOB1_POLSJ | 2, ., 8, ., 1, ., 6 | 0.5955 | 0.9022 | 0.9317 | no | N/A |
| Q0BBD4 | BIOB_BURCM | 2, ., 8, ., 1, ., 6 | 0.5882 | 0.9281 | 0.9528 | yes | N/A |
| Q2KWF1 | BIOB_BORA1 | 2, ., 8, ., 1, ., 6 | 0.5825 | 0.8879 | 0.9566 | yes | N/A |
| B1JZE1 | BIOB_BURCC | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8735 | 0.8967 | yes | N/A |
| B4S0P9 | BIOB_ALTMD | 2, ., 8, ., 1, ., 6 | 0.6096 | 0.8908 | 0.8288 | yes | N/A |
| Q609V2 | BIOB_METCA | 2, ., 8, ., 1, ., 6 | 0.5789 | 0.8735 | 0.9325 | yes | N/A |
| A9I023 | BIOB_BORPD | 2, ., 8, ., 1, ., 6 | 0.5927 | 0.9367 | 0.9588 | yes | N/A |
| Q2Y9Y9 | BIOB_NITMU | 2, ., 8, ., 1, ., 6 | 0.6111 | 0.8793 | 0.8947 | yes | N/A |
| Q1LS73 | BIOB_RALME | 2, ., 8, ., 1, ., 6 | 0.5981 | 0.9511 | 0.9594 | yes | N/A |
| Q12D73 | BIOB2_POLSJ | 2, ., 8, ., 1, ., 6 | 0.6006 | 0.9367 | 0.9504 | yes | N/A |
| B2JKH4 | BIOB_BURP8 | 2, ., 8, ., 1, ., 6 | 0.6578 | 0.8735 | 0.8660 | yes | N/A |
| A2S7R3 | BIOB_BURM9 | 2, ., 8, ., 1, ., 6 | 0.6210 | 0.9022 | 0.9345 | yes | N/A |
| B8GTH4 | BIOB_THISH | 2, ., 8, ., 1, ., 6 | 0.6032 | 0.8764 | 0.8970 | yes | N/A |
| A3MNG1 | BIOB_BURM7 | 2, ., 8, ., 1, ., 6 | 0.6210 | 0.9022 | 0.9345 | yes | N/A |
| Q62MW9 | BIOB_BURMA | 2, ., 8, ., 1, ., 6 | 0.6210 | 0.9022 | 0.9345 | yes | N/A |
| Q0KF86 | BIOB_CUPNH | 2, ., 8, ., 1, ., 6 | 0.5915 | 0.9339 | 0.9475 | yes | N/A |
| Q39CE4 | BIOB_BURS3 | 2, ., 8, ., 1, ., 6 | 0.5913 | 0.9281 | 0.95 | yes | N/A |
| A4JIB7 | BIOB_BURVG | 2, ., 8, ., 1, ., 6 | 0.6071 | 0.8850 | 0.9085 | yes | N/A |
| Q7WMQ3 | BIOB_BORBR | 2, ., 8, ., 1, ., 6 | 0.6064 | 0.8908 | 0.9253 | yes | N/A |
| Q3JWR8 | BIOB_BURP1 | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8965 | 0.9285 | yes | N/A |
| Q3J9D5 | BIOB_NITOC | 2, ., 8, ., 1, ., 6 | 0.6 | 0.8764 | 0.8840 | yes | N/A |
| A3NQS1 | BIOB_BURP0 | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8965 | 0.9285 | yes | N/A |
| B2AGA0 | BIOB_CUPTR | 2, ., 8, ., 1, ., 6 | 0.6414 | 0.8735 | 0.8941 | yes | N/A |
| Q82SL7 | BIOB_NITEU | 2, ., 8, ., 1, ., 6 | 0.5993 | 0.9080 | 0.9376 | yes | N/A |
| Q8Y2R9 | BIOB_RALSO | 2, ., 8, ., 1, ., 6 | 0.5893 | 0.9022 | 0.8722 | yes | N/A |
| A1VUJ4 | BIOB_POLNA | 2, ., 8, ., 1, ., 6 | 0.6168 | 0.8850 | 0.8927 | yes | N/A |
| Q7NPW1 | BIOB_CHRVO | 2, ., 8, ., 1, ., 6 | 0.5768 | 0.9166 | 0.9755 | yes | N/A |
| Q146K5 | BIOB_BURXL | 2, ., 8, ., 1, ., 6 | 0.6315 | 0.8735 | 0.8444 | yes | N/A |
| A9AE44 | BIOB_BURM1 | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8735 | 0.8967 | yes | N/A |
| A0KB05 | BIOB_BURCH | 2, ., 8, ., 1, ., 6 | 0.625 | 0.8735 | 0.8967 | yes | N/A |
| A1V817 | BIOB_BURMS | 2, ., 8, ., 1, ., 6 | 0.6210 | 0.9022 | 0.9345 | yes | N/A |
| A2SGQ6 | BIOB_METPP | 2, ., 8, ., 1, ., 6 | 0.6241 | 0.8793 | 0.9272 | yes | N/A |
| A4G1F1 | BIOB_HERAR | 2, ., 8, ., 1, ., 6 | 0.6593 | 0.9109 | 0.9351 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.6 | 0.991 |
| 3rd Layer | 2.8.1 | 0.976 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 348 | |||
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-160 | |
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-157 | |
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 1e-141 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 1e-139 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 8e-90 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 6e-56 | |
| smart00876 | 94 | smart00876, BATS, Biotin and Thiamin Synthesis ass | 7e-36 | |
| pfam06968 | 93 | pfam06968, BATS, Biotin and Thiamin Synthesis asso | 2e-30 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 6e-29 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 3e-16 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 7e-14 | |
| TIGR03957 | 317 | TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydrometha | 5e-11 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 8e-09 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-d | 9e-09 | |
| TIGR03910 | 347 | TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis | 2e-07 | |
| PRK06245 | 336 | PRK06245, cofG, FO synthase subunit 1; Reviewed | 6e-06 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 2e-05 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 6e-05 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 4e-04 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 8e-04 | |
| TIGR03551 | 343 | TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-d | 0.002 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 450 bits (1160), Expect = e-160
Identities = 144/297 (48%), Positives = 196/297 (65%), Gaps = 5/297 (1%)
Query: 36 NLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITAT 95
L + P DLL AQ++ R +F N+++L +++ K+GGC EDC YC QS HY T I
Sbjct: 2 ELPDEPLLDLLAAAQRIRRHFF-GNKVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEKY 60
Query: 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG 154
+LS+E V+ AA+KAK+ GA+RFCM + R DR+ + + I E+K+ GLE C +LG
Sbjct: 61 PLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDREFEKVLEAIREIKEETGLEVCASLG 120
Query: 155 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 214
+L+E QA RLK G+D YNHNL+TSP Y +I +T Y++RL TLK R G+++C GGI
Sbjct: 121 LLSEEQAQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKAGLSVCSGGI 180
Query: 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274
IG+ E+ + R EL F LA L+ +SVPIN LV I GTPL + LDP E +RTIA+ R
Sbjct: 181 IGMGETMEDRIELAFALAELD--VDSVPINFLVPIPGTPLEDAPPLDPEECLRTIALFRF 238
Query: 275 TMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 331
MP + IR++ GR+ M QA CFLAGANSIF GD LTT + +D ++L+ LG
Sbjct: 239 IMPDAEIRLAGGRELMLRELQALCFLAGANSIFTGD-YLTTAGREAEEDLEMLEDLG 294
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1143), Expect = e-157
Identities = 178/319 (55%), Positives = 238/319 (74%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V LF P +LLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 7 WTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 66
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 67 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 126
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
TC+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI
Sbjct: 127 TCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+C GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +
Sbjct: 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 306
Query: 329 KLGINTRNIKIKMKNNIKQ 347
KLG+N + + +N +Q
Sbjct: 307 KLGLNPQQTAVLAGDNEQQ 325
|
Length = 345 |
| >gnl|CDD|215219 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 405 bits (1043), Expect = e-141
Identities = 158/330 (47%), Positives = 215/330 (65%), Gaps = 2/330 (0%)
Query: 8 SSKESNSIKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVL 67
SS + +I AI W DE+ +++ P DLLF +VHR D E++ L
Sbjct: 26 SSSSAAAIAAERAIREGPRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTL 85
Query: 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWREL 127
LSIKTGGC+EDC YCPQS+ Y+T + A K++S + V+ AA++AK G+TRFCMGAAWR+
Sbjct: 86 LSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDT 145
Query: 128 --KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 185
+ + + I + E++ +G+E C TLGML + QA +LK+ GL YNHNLDTS + Y +
Sbjct: 146 VGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPN 205
Query: 186 IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245
+I+TR Y++RL TL+ VR GI++C GGIIGL E+ + R L+ LA L +PESVPIN
Sbjct: 206 VITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINA 265
Query: 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 305
LV +KGTPL ++ E +R IA ARI MP + +R+SAGR QA CFLAGANS
Sbjct: 266 LVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANS 325
Query: 306 IFYGDKLLTTDNTKTNDDSKLLKKLGINTR 335
IF GDKLLTT N + D + K+LG+ +
Sbjct: 326 IFTGDKLLTTPNNDFDADQAMFKELGLIPK 355
|
Length = 379 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 397 bits (1021), Expect = e-139
Identities = 169/306 (55%), Positives = 214/306 (69%), Gaps = 4/306 (1%)
Query: 29 WKLDEVINLFNLPFND-LLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 87
W LDE + L +LP D LLF A + HR +FD NE++L+ L+SIKTG C EDC YC QS
Sbjct: 14 WTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSAR 73
Query: 88 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G 146
Y T + A K++ +E ++ AA+KAK+ GATRFCMGAA R RD++ + I VK+ G
Sbjct: 74 YKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELG 132
Query: 147 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 206
LE C +LGML E QA +L G+D YNHNL+TSP+ Y +II+TR YE+RLNTL+NVR G
Sbjct: 133 LEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAG 192
Query: 207 INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFI 266
I +C GGI+GL E+ + RAEL+ +LANL P+SVPIN L I GTPL + LDP EF+
Sbjct: 193 IEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFEFL 251
Query: 267 RTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKL 326
+TIAVARI MP S IR+SAGR+ M QA F+AGANSIF GDK LTT + D +L
Sbjct: 252 KTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLEL 311
Query: 327 LKKLGI 332
LK LG+
Sbjct: 312 LKDLGL 317
|
Length = 335 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 8e-90
Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 9/304 (2%)
Query: 32 DEVINLFNLP---FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
+E + L +P +LL A +V + + +++L +++ K+G C EDCGYC QS
Sbjct: 23 EEALALLEIPDDDLLELLAAAYEVRKHFCG-KKVKLNTIINAKSGLCPEDCGYCSQSAGS 81
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL 147
+ + L IE +I AA++A +GA FC+ A+ R +++D + + +K+ L
Sbjct: 82 SAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL 141
Query: 148 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 207
E C LG+L E QA RLK+ G+D YNHNL+TS + ++++T YE+R++T + V+ GI
Sbjct: 142 EICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGI 201
Query: 208 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 267
C GGIIG+ ES + R E F L L+ +S+PIN L I GTPL L PLE ++
Sbjct: 202 EPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLK 259
Query: 268 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 327
TIA+ R+ P IR++ GR E+ + L GANS+ G+ L T T D ++
Sbjct: 260 TIAIFRLINPDKEIRIAGGR-EVNLRSLQPLGLGGANSVIVGNYLTTVGQPAT-ADLDMI 317
Query: 328 KKLG 331
+ LG
Sbjct: 318 EDLG 321
|
Length = 336 |
| >gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 6e-56
Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 6/276 (2%)
Query: 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFC 119
EI L + +I +G C EDC YC QS HY +I K IE ++ A+ AK++GA FC
Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61
Query: 120 MGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--GMLNENQAYRLKKVGLDYYNHNLD 177
+ + R L D+ L+ + VKK L G + Q LKK G+ YNHNL+
Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121
Query: 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPY 237
TS + + I +T +E R T +N + G+ +C GGI GL ES + R + LA+L+
Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179
Query: 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 297
P S PIN + PL + L E + + +A+ +P +R+ ++ GR+ + Q
Sbjct: 180 PHSTPINFFIPNPALPLKAPT-LSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238
Query: 298 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 333
F AGAN+I GD LTT D + LK LG
Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFE 273
|
Length = 279 |
| >gnl|CDD|214877 smart00876, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 7e-36
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 242 PINNLVQIKGTPLYG-SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 300
PIN L I+GTPL + P EF+RTIA AR+ +P + IR+S GR+ + QA CF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 301 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 333
AGANSIF GDK LTT ++ DD +L+KLG+
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLE 93
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers.. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 |
| >gnl|CDD|219245 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-30
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 242 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 301
PIN L I+GTPL L E ++TIA R+ +P + IR+S GR+ + Q F++
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 302 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 333
GANS F G L T+ N ++D +LK LG+
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLE 92
|
Biotin synthase (BioB), EC:2.8.1.6, catalyzes the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerisation (Finn, RD personal observation). Length = 93 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-29
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)
Query: 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA-----TRFCM 120
+ L I T GC C +C + + +E+++ + G +
Sbjct: 2 LALYIITRGCPRRCTFCSFPSLRGKL----RSRYLEALVREIELLAEKGEKEGLVGTVFI 57
Query: 121 GAAWRELKDRD-----LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175
G L + L+ I ++ K + + L E LK+ G++ +
Sbjct: 58 GGGTPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLG 117
Query: 176 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCGGIIGLS-ESRDQRAELIFQLA 232
+ + ++ I E+ L ++ +R G I + I+GL E+ + E + L
Sbjct: 118 VQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177
Query: 233 NLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274
L P+ V I L GTPL + L+ A +
Sbjct: 178 ELG--PDRVSIFPLSPRPGTPLA--KMYKRLKPPTKEERAEL 215
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 3e-16
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG----AAWR 125
I T GC C YC + + LS E ++ A++ G +
Sbjct: 2 IVTRGCNLRCTYCAFPSIRARG--KGRELSPEEILEEAKELARLGVEVVILTGGEPLLLP 59
Query: 126 ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 185
+L + ++ E +I LET TL L+E LK+ GLD + +L +
Sbjct: 60 DLVELLERLLKLREGEGIRITLETNGTL--LDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 186 II-STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELI 228
II +E L L+ +R GI + I+GL E+ + E +
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETL 162
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 7e-14
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 72 TGGCTEDCGYC--PQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD 129
T GC +CG+C P S E IE ++ +AK G + L
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPES----PPEIEEILDIVLEAKERGVEVVILTGGEPLLYP 59
Query: 130 RDLDNIENMI--CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 187
+ + + +I +ET +L E LK++GLD +LD+ + D I
Sbjct: 60 ELAELLRRLKKELPGFEISIET--NGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 188 --STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 244
S ++ RL LK +R G+ + ++GL E + E + LA P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS-PDRVSLF 176
Query: 245 NLVQIKGTPLYGSSILDPLE-FIRTIAV 271
L+ +GTPL ++ + P E +R IA
Sbjct: 177 RLLPEEGTPLELAAPVVPAEKLLRLIAA 204
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 5e-11
Identities = 72/296 (24%), Positives = 112/296 (37%), Gaps = 42/296 (14%)
Query: 32 DEVINLFN-------LPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGC--TEDCGYC 82
DE + LF L D+ R + R +I+L + I T C C YC
Sbjct: 4 DEALKLFKSDNSRDLLKLFDIASRVRDYFRG-----KIKLTSTIHI-TNICHVRPKCLYC 57
Query: 83 -----PQSTHYNTEITATKILSIESVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIE 136
Y T E + AA+ + G R C GA +
Sbjct: 58 GFAAGTSKEGYYEPFRKTD----EEIKEAAKAIEESGIPRVSCSGAHG--------YGGK 105
Query: 137 NMICEVKKIGLETCLTLGM-----LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR 190
+ + + T L L + L E L + G D NL+T + +L+ +
Sbjct: 106 EAVRAARIVKENTSLELLINVGADLTEESIEELARYGTDTICCNLETTNEELFKKLKPGE 165
Query: 191 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250
+ E+R+ + V GI + G +IG+ ES + R E + L E +PI
Sbjct: 166 ELEDRIRVCEMVCKYGIELSSGLLIGIGESYEDRLEHLKFLKRFENLGE-IPIMGFNPYP 224
Query: 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306
GTP+ LE +TIAV R+ P IR++ +G F +AGA+++
Sbjct: 225 GTPMENHPPCSLLEQAKTIAVTRLMYPD--IRITVPTPTIGPENVQFALMAGADNV 278
|
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]. Length = 317 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 34/257 (13%)
Query: 75 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDN 134
C DC +C LS E ++ ++A G T + E + L+
Sbjct: 69 CVNDCTFCAFYRKPGDP--KAYTLSPEEILEEVREAVKRGITEVLIVGG--EHPELSLEY 124
Query: 135 IENMICEVKKIGLETCLTL-------------GMLNENQAYRLKKVGLDYY-----NHNL 176
E + +K+ + + G+ E RLK+ GLD
Sbjct: 125 YEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILS 184
Query: 177 DTSPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234
+ I + E L + +GI ++G E+R+ R + + + +L
Sbjct: 185 EE----VRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDL 240
Query: 235 N---PYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE 289
+ G P + ++ IA+ARI + + ++ +
Sbjct: 241 QDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLR- 299
Query: 290 MGETTQAFCFLAGANSI 306
G L+GAN +
Sbjct: 300 DGVILAQAALLSGANDL 316
|
Length = 370 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 75 CTEDCGYCPQSTHYNT--EITATKILSIESVITAAQKAKSDGATR--FCMG--------A 122
C CGYC T E+ A +LS E V+ +K + G T F G
Sbjct: 14 CRNRCGYC---TFRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPE 69
Query: 123 AWRELKDRDLDNIENMICEVKKIGLETCLTL-----GMLNENQAYRLKKV----GLDYYN 173
A L + D+ + E+ ++ LE L G+++ ++ RLK V GL
Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLET 129
Query: 174 HNLDTSPKLYGDII----STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229
TS +L +D RL T+++ + I G +IG+ E+R++RAE +
Sbjct: 130 ----TSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 230 QLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286
+ L+ + + V + N GTP+ E +RT+AVAR+ +P I +
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILP-PDISIQVP 244
Query: 287 RKEMGETTQAFCFLAGAN 304
E + AG +
Sbjct: 245 PNLNREDYRLL-LDAGID 261
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 322 |
| >gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 15/250 (6%)
Query: 42 FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKI--LS 99
L + A++V KYF N + L L T C +C +C +Y A + +
Sbjct: 35 MEKLFYVAREVRNKYF-GNRVFLYGFLYFSTF-CKNNCAFC----YYRKSNHAIRRYRKT 88
Query: 100 IESVITAAQKAKSDGA--TRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGM 155
E + AA+ G MG D R + + ++ VK+ GL ++ G+
Sbjct: 89 REEIKAAARALADSGVHLIDLTMGEDPYYHNDPRGFERLAELVRMVKEETGLPVMISPGV 148
Query: 156 LNENQAYRLKKVGLDYYNHNLDTSPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGI 214
++ +LK+ G ++Y +T + LY + + ++ R+N+ ++ + +G I G +
Sbjct: 149 VDNETLKKLKEAGANWYACYQETHDRELYNKLRVGQSFDERMNSKRHAKRIGYLIEEGIL 208
Query: 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274
G+ + + A + + +L+ + V + V KGTPL G + L +R IA+ R+
Sbjct: 209 TGVGDDIEDTAISLRGMKSLDA--DQVRVMTFVPQKGTPLEGKDVEGNLAELRIIAIMRL 266
Query: 275 TMPTSRIRMS 284
P I S
Sbjct: 267 LFPDRLIPAS 276
|
This model describes a radical SAM protein, PylB, that is part of the three-gene cassette sufficient for the biosynthesis of pyrrolysine (the twenty-second amino acid) when expressed heterologously in E. coli. The pyrrolysine next is ligated to its own tRNA and incorporated at special UAG codons [Amino acid biosynthesis, Other]. Length = 347 |
| >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 75 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR--FCMG--------AAW 124
C CGYC + + +LS E V ++ G T F G
Sbjct: 22 CRNRCGYC----TFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIK 77
Query: 125 RELKDRDLDNIENMICEVKKIGLETCL----TLGMLNENQAYRLKKV----GLDYYNHNL 176
+L + +I + ++ ++ LE L G+L + +LK+V GL
Sbjct: 78 EQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNASMGLMLEQ--- 134
Query: 177 DTSPKLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 233
TSP+L + +D E RL T++N + I G +IG+ E+ + RAE + +A
Sbjct: 135 -TSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAE 193
Query: 234 LNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 279
L+ + + V I N G P+ E +R +A+AR+ +P
Sbjct: 194 LHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242
|
Length = 336 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 19/259 (7%)
Query: 32 DEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 87
DE++ L + L A +V +KY +E+ L L+ + C +C YC
Sbjct: 4 DEILELLSNDDEEELKYLFKAADEVRKKYVG-DEVHLRGLIEF-SNYCRNNCLYCGLRRD 61
Query: 88 YNTEITATKILSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKKI 145
N I + LS E ++ A+KA G + G ++ I ++I E+KK
Sbjct: 62 -NKNIERYR-LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK----IADIIKEIKKE 115
Query: 146 -GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVR 203
+ L+LG + + K+ G D Y +T+ +LY + +ENR+ LK+++
Sbjct: 116 LDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLK 175
Query: 204 NVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 262
+G + G ++GL ++ + A+ I L L+ + + I + TPL
Sbjct: 176 ELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGSL 233
Query: 263 LEFIRTIAVARITMPTSRI 281
++ +A+ R+ +P + I
Sbjct: 234 ELTLKVLALLRLLLPDANI 252
|
Length = 323 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 160 QAYRLKKVGL---DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 214
Q RL V D +NHNL+T P+L + DY+ L+ L + + +I G +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 215 IGLSESRDQRAELIFQLANL 234
+GL E+ D E+I L +L
Sbjct: 212 LGLGETED---EVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 164 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESR 221
+ G D +NHN++T P+LY + YE L+ L+ + +G +I G ++GL E+
Sbjct: 168 VADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETD 227
Query: 222 DQ 223
++
Sbjct: 228 EE 229
|
Length = 306 |
| >gnl|CDD|233002 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 164 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESR 221
L D YNHNL+T +L + Y L L+ + N+ G ++GL E+
Sbjct: 162 LLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETN 221
Query: 222 DQRAELIFQLAN 233
++ + + L +
Sbjct: 222 EEIKQTLKDLRD 233
|
This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302 |
| >gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 53/266 (19%), Positives = 93/266 (34%), Gaps = 50/266 (18%)
Query: 75 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDN 134
C CG+C +LS+E + A +A GAT C+ D D D
Sbjct: 49 CYGGCGFCAFRKRKGD--ADAYLLSLEEIAERAAEAWKAGATEVCIQGGI--HPDLDGDF 104
Query: 135 IENMICEVKKIGLETCL-------------TLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181
+++ VK+ + G+ E RLK+ G LD+ P
Sbjct: 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAG-------LDSMPG 157
Query: 182 LYGDI-------------ISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228
+I +ST ++ + +K +GI + G E+ + + +
Sbjct: 158 TAAEILDDEVRKVICPDKLSTAEW---IEIIKTAHKLGIPTTATIMYGHVETPEHWVDHL 214
Query: 229 FQLANL----NPYPESVPINNLVQIKGTPLYGSSILDP----LEFIRTIAVARITMPTSR 280
L + + E VP+ + PLY + P E ++ A+ARI +
Sbjct: 215 LILREIQEETGGFTEFVPLPFVH--YNAPLYLKGMARPGPTGREDLKVHAIARILLHGLI 272
Query: 281 IRMSAGRKEMGETTQAFCFLAGANSI 306
+ A ++G+ GAN +
Sbjct: 273 DNIQASWVKLGKKLAQVALRCGANDL 298
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 343 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| PRK15108 | 345 | biotin synthase; Provisional | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 100.0 | |
| PLN02389 | 379 | biotin synthase | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 100.0 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| KOG2900|consensus | 380 | 100.0 | ||
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 100.0 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 100.0 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 100.0 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 100.0 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 100.0 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.97 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.97 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.96 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.96 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.96 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.96 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.95 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.95 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.95 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.95 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.94 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.94 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.94 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.94 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.94 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.94 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.93 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.93 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.93 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.93 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.93 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.93 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.92 | |
| PLN02428 | 349 | lipoic acid synthase | 99.92 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.92 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.92 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.92 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.92 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.91 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.91 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.91 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.9 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.9 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.89 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.88 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.86 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.83 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.8 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.79 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.79 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.78 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.78 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.78 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.77 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.77 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.77 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.76 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.74 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.71 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.68 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domai | 99.68 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.67 | |
| PF06968 | 93 | BATS: Biotin and Thiamin Synthesis associated doma | 99.67 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.67 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.67 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.64 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.64 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.58 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.52 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.5 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.5 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.5 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.49 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.47 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.47 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.47 | |
| KOG2672|consensus | 360 | 99.46 | ||
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.44 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 99.44 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.42 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.42 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.41 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.4 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.37 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.37 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.36 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.36 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.35 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.35 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.35 | |
| KOG4355|consensus | 547 | 99.33 | ||
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.33 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.31 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.31 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.29 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.29 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.26 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.22 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.21 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.19 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 99.19 | |
| KOG2492|consensus | 552 | 99.17 | ||
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.14 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.12 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.11 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.09 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.06 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 99.03 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 98.97 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 98.9 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.89 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.86 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 98.76 | |
| KOG2535|consensus | 554 | 98.75 | ||
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.67 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 98.66 | |
| KOG2876|consensus | 323 | 98.55 | ||
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 98.49 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 98.43 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 98.42 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 98.4 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.34 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.34 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 98.27 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 98.23 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 98.18 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 98.18 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.16 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 98.14 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 98.13 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 98.12 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 98.07 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 98.04 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 98.03 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 98.01 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.0 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 97.99 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 97.88 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.75 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 97.75 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 97.69 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 97.68 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.66 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 97.64 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 97.63 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 97.58 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.55 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 97.54 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 97.51 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 97.5 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 97.48 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.37 | |
| PRK08005 | 210 | epimerase; Validated | 97.36 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 97.26 | |
| PRK14057 | 254 | epimerase; Provisional | 97.23 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 97.21 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 97.16 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 97.13 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 97.12 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 97.11 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.09 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.07 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 97.02 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.93 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.88 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 96.86 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 96.81 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.8 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 96.79 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 96.79 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 96.73 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 96.62 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 96.51 | |
| KOG3111|consensus | 224 | 96.51 | ||
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 96.49 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.42 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 96.38 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 96.19 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 95.82 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 95.81 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 95.74 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.65 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 95.51 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 95.42 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.31 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 94.98 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 94.86 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 94.78 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 94.69 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 94.68 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 94.65 | |
| PRK15452 | 443 | putative protease; Provisional | 94.52 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 94.5 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 94.43 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 94.41 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.32 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.23 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 94.21 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 94.2 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 94.04 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 93.87 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.86 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 93.84 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 93.83 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 93.82 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 93.71 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 93.63 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.33 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 93.19 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 93.16 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 93.03 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 92.92 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 92.91 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 92.79 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 92.78 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 92.64 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 92.36 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 92.33 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 92.32 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 92.04 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 91.77 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.43 | |
| KOG2550|consensus | 503 | 91.29 | ||
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 91.25 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.13 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 91.04 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 90.92 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.92 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 90.91 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 90.89 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 90.73 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 90.48 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 90.45 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 90.4 | |
| PF10113 | 505 | Fibrillarin_2: Fibrillarin-like archaeal protein; | 90.35 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.33 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.31 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 90.27 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 90.17 | |
| KOG2367|consensus | 560 | 90.16 | ||
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 90.15 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 90.03 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 89.97 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 89.75 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 89.63 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 89.48 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 89.36 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 89.16 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 89.1 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 89.08 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.98 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 88.94 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 88.86 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 88.78 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 88.76 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.59 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 88.53 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 88.35 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 88.35 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 88.3 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 88.3 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 88.25 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 88.0 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 87.95 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.86 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 87.79 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 87.76 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 87.5 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 87.5 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 87.45 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 87.31 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 87.23 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 87.17 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 87.04 | |
| PLN02591 | 250 | tryptophan synthase | 86.9 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 86.83 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 86.75 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 86.7 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 86.67 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 86.57 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 86.39 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 86.16 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 86.12 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 86.06 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 86.05 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 85.91 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 85.91 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 85.9 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 85.81 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 85.76 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 85.69 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 85.65 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 85.27 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 85.18 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 84.8 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 84.78 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 84.75 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 84.59 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 84.43 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 84.38 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 84.38 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.35 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 84.24 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 84.14 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 83.97 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 83.74 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 83.51 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 83.29 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 83.11 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 83.07 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 82.93 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 82.83 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 82.81 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 82.75 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 82.74 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 82.58 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 82.55 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 82.32 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 82.24 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 82.24 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 82.18 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 82.14 | |
| COG0854 | 243 | PdxJ Pyridoxal phosphate biosynthesis protein [Coe | 82.09 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 81.8 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 81.75 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 81.68 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 81.51 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 81.46 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 81.32 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 81.15 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 81.12 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 81.03 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 80.88 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 80.71 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 80.55 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 80.36 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 80.16 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 80.1 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.07 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 80.05 |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-59 Score=433.05 Aligned_cols=322 Identities=55% Similarity=0.962 Sum_probs=294.5
Q ss_pred ccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHH
Q psy14485 24 SQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESV 103 (348)
Q Consensus 24 ~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 103 (348)
+-+++||++|++.|++.|+.+|++.|+++|+++|.++.|+++.++++.|++|+.+|.||++++.+....+.+..++++||
T Consensus 2 ~~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI 81 (345)
T PRK15108 2 AHRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQV 81 (345)
T ss_pred CccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHH
Confidence 34679999999999988999999999999999995578999999998899999999999999754334445556999999
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
++.++.+.+.|+++|++++++..|+..+.+++.++++.+++.++.++++.|.++++.++.|+++|++++++++||+++.|
T Consensus 82 ~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f 161 (345)
T PRK15108 82 LESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFY 161 (345)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhc
Confidence 99999999999999999877656656678999999999998888889999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHH
Q psy14485 184 GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 263 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~ 263 (348)
..+++++++++|+++++.++++|+.+++++|+|+|||.+|+++++..++++++.+++|++++|+|.+||||++.++.++.
T Consensus 162 ~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~ 241 (345)
T PRK15108 162 GNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF 241 (345)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999954378999999999999999988889999
Q ss_pred HHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhhhhHHhh
Q psy14485 264 EFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMKN 343 (348)
Q Consensus 264 ~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~~~~~~~ 343 (348)
+.++++|++|+++|+..+++++||..++.+.++.+|.+|||++|.|++++|+.|.+.+++.+||+++||+|++|+-.--+
T Consensus 242 e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~~ 321 (345)
T PRK15108 242 DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGD 321 (345)
T ss_pred HHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCcccccccccc
Confidence 99999999999999999999999988888899999999999999999877888999999999999999999999976555
Q ss_pred hh
Q psy14485 344 NI 345 (348)
Q Consensus 344 ~~ 345 (348)
|.
T Consensus 322 ~~ 323 (345)
T PRK15108 322 NE 323 (345)
T ss_pred hh
Confidence 43
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=422.08 Aligned_cols=309 Identities=54% Similarity=0.883 Sum_probs=287.9
Q ss_pred CCCCCHHHHHHhhcCChH--HHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHH
Q psy14485 26 SLIWKLDEVINLFNLPFN--DLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESV 103 (348)
Q Consensus 26 ~~~ls~~e~~~Ll~~~~~--~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 103 (348)
+..||.+|++.|++.|.. .|+.+|..+|++ |+|+.|.++.+|+++|..||.+|.||++++++..+...|..+++++|
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~-~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeI 89 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLH-FDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEI 89 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHh-cCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHH
Confidence 578999999999998654 477777777655 55999999999999888889999999999987666667777999999
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.|+.+++.|+.+++++.+|.+ ...+.+++.++++.++ ..+++++++.|.++++.++.|+++|++++++++||+++.
T Consensus 90 le~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~ 168 (335)
T COG0502 90 LEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEF 168 (335)
T ss_pred HHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHHH
Confidence 99999999999999999888776 5678999999999999 579999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCH
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
|+.|+++|++++++++++.++++|+.+|++.|+|+|||.+|+++++..|+++.+ |++|+++.|+|.|||||++.++.++
T Consensus 169 y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~ 247 (335)
T COG0502 169 YENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDP 247 (335)
T ss_pred HcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCCH
Confidence 999999999999999999999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhh
Q psy14485 263 LEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~ 337 (348)
.+.++++|++|+++|+..|++++||+.+.+..+..++.+|||++++|+.++|+.|+..+++.++++++|++|...
T Consensus 248 ~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335)
T COG0502 248 FEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335)
T ss_pred HHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccc
Confidence 999999999999999999999999999999999999999999999999777899988999999999999998854
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=433.21 Aligned_cols=321 Identities=49% Similarity=0.849 Sum_probs=290.9
Q ss_pred HHHhhhhhcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcc
Q psy14485 15 IKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITA 94 (348)
Q Consensus 15 ~~~~~~~~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~ 94 (348)
...+..+.......+|.+|++.|+..|+.+|+..|+++++++|.|++|+++++++++|++|+.+|.||+|++.++.+.+.
T Consensus 33 ~~~~~~~~~~~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~ 112 (379)
T PLN02389 33 IAAERAIREGPRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKA 112 (379)
T ss_pred ccccccccccccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcc
Confidence 33344445556778999999999977899999999999988886679999999999999999999999999865555556
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
|..+++++|++.++.+.+.|+++|++++++. ...+...+++.++++.+++.+++++++.|.+++|.++.|++||++++
T Consensus 113 ~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 113 QKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 7679999999999999999999999975321 22224578999999999988899999999999999999999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
++++||+++.|+.+++++++++|+++++.++++|+++++++|+|+|||.+|+++++.++++++..++++++++|+|.|||
T Consensus 193 ~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GT 272 (379)
T PLN02389 193 NHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGT 272 (379)
T ss_pred EeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCC
Confidence 99999998999999999999999999999999999999999999999999999999999999533899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCC
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 332 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~ 332 (348)
||++.+++++++.++++|++|+++|+..+++++||..++.+.++.+|.+|||++|.|+|++|+.|++.++|.+||+++||
T Consensus 273 pL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~ 352 (379)
T PLN02389 273 PLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGL 352 (379)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCC
Confidence 99998899999999999999999999999999999888888899999999999999998789999999999999999999
Q ss_pred Cch
Q psy14485 333 NTR 335 (348)
Q Consensus 333 ~p~ 335 (348)
+|.
T Consensus 353 ~~~ 355 (379)
T PLN02389 353 IPK 355 (379)
T ss_pred Ccc
Confidence 987
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=404.01 Aligned_cols=308 Identities=16% Similarity=0.213 Sum_probs=275.7
Q ss_pred hcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEE--EEEEeecCCCCCCCCcCCCCCCCCCCCccccccC
Q psy14485 22 SSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILS 99 (348)
Q Consensus 22 ~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 99 (348)
+...++++|.+|++.|++.++.+|+..|+++|++++ |++|+++ .+|++ ||.|+.+|.||+|++.++.. .+|. ++
T Consensus 6 kv~~g~~ls~eeal~Ll~~dl~~L~~~A~~vR~~~~-G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~~~-~~y~-ls 81 (353)
T PRK08444 6 KLENNERLNQEEAVKLYDLDLFTLGKYADKKRTKLH-GKKVYFNVNRHINP-TNICADVCKFCAFSAHRKNP-NPYT-MS 81 (353)
T ss_pred HHhcCCCCCHHHHHHHhhcCHHHHHHHHHHHHHHhc-CCEEEEEecCCccc-ccccccCCccCCCccCCCCC-cccc-CC
Confidence 346789999999999998889999999999998888 9999999 56777 99999999999999865433 5685 89
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHH
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKK 166 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~ 166 (348)
+|||++.++++.+.|+++|+|+||. +| ..+++++.++++.|++. ++++++ +.|...+|.++.|++
T Consensus 82 ~eeI~~~a~~a~~~G~~ei~iv~G~-~p-~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 82 HEEILEIVKNSVKRGIKEVHIVSAH-NP-NYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccC-CC-CCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999884 44 34789999999999984 678886 678889999999999
Q ss_pred hCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 167 VGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 167 aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
||++++++ +.|+ ++++++.|+|+| +.++|++.++.+|++|+++++++|||+|||.+|+++++..+++++ .++++|
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf 237 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ--DKTGGF 237 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc--cccCCc
Confidence 99999999 6999 899999999987 558889999999999999999999999999999999999999999 899999
Q ss_pred cccccc----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccccchhhHHHHHHhCccee---eeCCeeccC
Q psy14485 244 NNLVQI----KGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTT 315 (348)
Q Consensus 244 ~~l~P~----~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~ 315 (348)
+.|+|. +|||+.+.+++++.++++++|++|++||+. +|+++| ..++.+..+.+|.+||||+ +.++++...
T Consensus 238 ~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w--~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ 315 (353)
T PRK08444 238 NAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYW--ATLTLNLALVAQEFGANDLDGTIEKESIQSA 315 (353)
T ss_pred eEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc--ccCcHHHHHHHHhcCCccCccccccccchhh
Confidence 999999 899999888899999999999999999995 788775 7788899999999999999 556777777
Q ss_pred CCC------CchHHHHHHHHcCCCchhhhh
Q psy14485 316 DNT------KTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 316 ~g~------~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+|+ +.+++.++|+++||+|++|+-
T Consensus 316 ag~~~~~~~~~~~l~~~i~~~g~~p~~R~t 345 (353)
T PRK08444 316 AGAKSANGLSLEDFIFLIKDSGFIPVERDS 345 (353)
T ss_pred ccCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 762 347899999999999999974
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=398.39 Aligned_cols=314 Identities=35% Similarity=0.600 Sum_probs=282.3
Q ss_pred hhhcccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcccc
Q psy14485 20 AISSSQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATK 96 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~ 96 (348)
+.+...++.+|++|++.||+. ++.+|+..|+++|+++| |+.|.++++++++|++|+++|.||+++..+......|+
T Consensus 11 ~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~ 89 (336)
T PRK06256 11 ARKLLEGEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFC-GKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYA 89 (336)
T ss_pred HHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhC-CCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceec
Confidence 344567899999999999985 36889999999988777 89999999999889999999999999986543334576
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++++|+++++.+.+.|+.+++|++++..|...+.+++.++++.+++ .++.++++.|.++++.++.|+++|++++.++
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 789999999999999999999988766555554556799999999987 4678888999999999999999999999999
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+||++++|+.+++++++++++++++.++++|+.+++++|+|+|||.+++.+++.++++++ ++.+++++|+|.||||++
T Consensus 170 lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~pGT~l~ 247 (336)
T PRK06256 170 LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLE 247 (336)
T ss_pred CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCch
Q psy14485 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTR 335 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~ 335 (348)
+.+++++.+++++++++|+++|+..|++++||+....+.+..+| +|||+++.|+| +|+.|.+.+++.+||+++|++|.
T Consensus 248 ~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~-lt~~g~~~~~d~~~~~~~g~~~~ 325 (336)
T PRK06256 248 NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNY-LTTVGQPATADLDMIEDLGFEIE 325 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCc-ccCCCCChHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999999999654567788888 89999999997 58999999999999999999985
Q ss_pred hhh
Q psy14485 336 NIK 338 (348)
Q Consensus 336 ~~~ 338 (348)
...
T Consensus 326 ~~~ 328 (336)
T PRK06256 326 LDA 328 (336)
T ss_pred cCc
Confidence 443
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-52 Score=387.55 Aligned_cols=323 Identities=15% Similarity=0.151 Sum_probs=272.1
Q ss_pred cccccccccchHHHhhhhhcccCCCCCHHHHHHhhcC----ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCC
Q psy14485 4 KIIQSSKESNSIKKNNAISSSQSLIWKLDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTED 78 (348)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~Ll~~----~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~ 78 (348)
+||.+.+.+.. -+.+...+++||++|++.|++. ++.+|+..|+++|++++ |+.|+++++++++ ||.|+.+
T Consensus 7 ~~~~~~~~~~~----~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~-G~~V~~~~~~nin~Tn~C~~d 81 (370)
T PRK05926 7 RILPKSSWLKT----LFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFADLIRANRV-GDTVYYSSTLYLYPTNFCQFN 81 (370)
T ss_pred ccccccHHHHH----HHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc-CCeEEEEEeeeeecCCCCCCC
Confidence 56666443322 2233467899999999999843 46889999999998887 9999999998885 9999999
Q ss_pred CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEec---
Q psy14485 79 CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTL--- 153 (348)
Q Consensus 79 C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~--- 153 (348)
|.||+|++.. .....| .+++|||++.++++ +.|+++|+|+|| .+| ..+.+++.++++.|++. +++++...
T Consensus 82 C~FCaf~~~~-~~~~~~-~ls~eeI~~~a~~a-~~G~~ei~iv~G-~~p-~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~E 156 (370)
T PRK05926 82 CTFCSFYAKP-GDPKGW-FYTPDQLVQSIKEN-PSPITETHIVAG-CFP-SCNLAYYEELFSKIKQNFPDLHIKALTAIE 156 (370)
T ss_pred CCccccccCC-CCcccc-cCCHHHHHHHHHHH-hcCCCEEEEEeC-cCC-CCCHHHHHHHHHHHHHhCCCeeEEECCHHH
Confidence 9999988753 222344 59999999999988 689999999987 555 46889999999999985 56666432
Q ss_pred --------CCCCHHHHHHHHHhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHH
Q psy14485 154 --------GMLNENQAYRLKKVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRD 222 (348)
Q Consensus 154 --------g~l~~e~l~~Lk~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e 222 (348)
+..++|.++.|++||++++++ |.|+ .+++++.++|++ +.++|+++++.+|++|+++++++|||+|||.+
T Consensus 157 i~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~e 236 (370)
T PRK05926 157 YAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPE 236 (370)
T ss_pred HHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHH
Confidence 346688899999999999998 5999 799999999854 88999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeecccccc----cCCCCCCC----CCCCCHHHHHHHHHHHHHHCCC-Cceeccccccccchh
Q psy14485 223 QRAELIFQLANLNPYPESVPINNLVQ----IKGTPLYG----SSILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGET 293 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P----~~gT~l~~----~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~ 293 (348)
|+++++..|++++ +++++|..|+| .++||++. .+..+..+.++++|++|++||+ .+|+++| ..++.+
T Consensus 237 drv~~l~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w--~~~G~~ 312 (370)
T PRK05926 237 DIVTHMSKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW--NYLGIE 312 (370)
T ss_pred HHHHHHHHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc--hhcCHH
Confidence 9999999999999 89999999999 67899864 3357889999999999999998 5788886 778888
Q ss_pred hHHHHHHhCccee---eeCCeeccCCCCC------chHHHHHHHHcCCCchhhhhH
Q psy14485 294 TQAFCFLAGANSI---FYGDKLLTTDNTK------TNDDSKLLKKLGINTRNIKIK 340 (348)
Q Consensus 294 ~~~~~l~~GAn~~---~~~~~~~~~~g~~------~~~~~~~i~~~G~~p~~~~~~ 340 (348)
..+.+|.+||||+ +.++++...+|.. .+++.++|+++|++|++|+-|
T Consensus 313 ~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~ 368 (370)
T PRK05926 313 VALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSK 368 (370)
T ss_pred HHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCC
Confidence 9999999999999 4566666666632 368899999999999999976
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=382.33 Aligned_cols=308 Identities=16% Similarity=0.233 Sum_probs=268.2
Q ss_pred hcccCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEE--EEEEeecCCCCCCCCcCCCCCCCCCCCcccccc
Q psy14485 22 SSSQSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKIL 98 (348)
Q Consensus 22 ~~~~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~ 98 (348)
+...++++|++|++.||+. ++.+|+..|+++|++++ |+.|+++ .+++. |++|+++|.||+|++.+.. ...|. +
T Consensus 4 ~~~~~~~ls~~e~~~L~~~~~~~~L~~~A~~vr~~~~-g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~~y~-l 79 (351)
T TIGR03700 4 KVEAGQRLSFEDGLFLYASDDLLTLGELAALVRERKH-GDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PGAYA-M 79 (351)
T ss_pred HHhCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHhc-CCeEEEeccCCccc-ccccccCCccCceeCCCCC-cccCC-C
Confidence 3467889999999999964 68999999999998877 9999999 56776 9999999999999986433 24675 8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHH
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk 165 (348)
++|||++.++.+.+.|+++|+|++| ..| ..+.+++.++++.|++. ++++++ +.|..++|.++.|+
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~G-~~p-~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVGG-LHP-NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecC-CCC-CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999987 445 45789999999999985 455554 25778889999999
Q ss_pred HhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 166 KVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 166 ~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+||++++.+ ++|+ ++++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+++++++..+++++ +++.+
T Consensus 158 eAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~--~~~~~ 235 (351)
T TIGR03700 158 EAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ--DETGG 235 (351)
T ss_pred HcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh--HhhCC
Confidence 999999985 8999 899999999976 678999999999999999999999999999999999999999999 78899
Q ss_pred ccccccc----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy14485 243 INNLVQI----KGTPLYGS--SILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 243 ~~~l~P~----~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
|+.|+|. +||||.+. +++++.+.++++|++|+++|+ .+|+++| ..++++..+.+|.+||||+ +.++++
T Consensus 236 f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w--~~~~~~~~~~~L~~Gand~ggt~~~e~v 313 (351)
T TIGR03700 236 FQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW--VMLGLKLAQVALAFGVNDLDGTVVEEKI 313 (351)
T ss_pred ceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc--cccCHHHHHHHHhcCCCCCCccCcccee
Confidence 9999998 59999876 789999999999999999999 6888885 6667888999999999998 445666
Q ss_pred ccCCCC------CchHHHHHHHHcCCCchhhhh
Q psy14485 313 LTTDNT------KTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g~------~~~~~~~~i~~~G~~p~~~~~ 339 (348)
...+|. +.+++.++|+++|++|++|+-
T Consensus 314 ~~~~g~~~~~~~~~~~l~~~i~~~g~~p~~r~~ 346 (351)
T TIGR03700 314 GHDAGAKSPQALSKDELVRLIRDAGRVPVERDT 346 (351)
T ss_pred eccccCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 555552 247899999999999999974
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=366.97 Aligned_cols=273 Identities=36% Similarity=0.586 Sum_probs=249.3
Q ss_pred CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHH
Q psy14485 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 60 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
|+|.+|++++++|++|+.+|.||++++.+....+.|+.+++|+|++.++++.+.|+.+|++++++..+.....+++.+++
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~ 81 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAA 81 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHH
Confidence 67999999999999999999999999866545567877899999999999999999999986544444456789999999
Q ss_pred HHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 140 CEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 140 ~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+.+++. ++.++++.|.+++|.++.|+++|++++++++||++++|+.+++++++++++++++.++++|+++++++|+|+
T Consensus 82 ~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl 161 (279)
T PRK08508 82 KAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL 161 (279)
T ss_pred HHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec
Confidence 999975 567778999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHH
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 297 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~ 297 (348)
|||.+|+++++.++++++ ++++++++|.|.||||+.. +++++++.++++|++|+++|+..|++++||+.+..+.+..
T Consensus 162 GEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~ 238 (279)
T PRK08508 162 GESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 (279)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHH
Confidence 999999999999999999 8999999999999999975 5689999999999999999999999999996555567889
Q ss_pred HHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchh
Q psy14485 298 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336 (348)
Q Consensus 298 ~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~ 336 (348)
+|.+|||+++.|+| +|+.|++.++|.+||+++|++|..
T Consensus 239 ~~~~g~n~~~~g~~-lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 239 IFEAGANAIVIGDY-LTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHhcCCcceeecCc-ccCCCCChHHHHHHHHHcCCCcCc
Confidence 99999999999996 599999999999999999999863
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=374.05 Aligned_cols=304 Identities=20% Similarity=0.301 Sum_probs=260.6
Q ss_pred CCHHHHHHhhcC--ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHH
Q psy14485 29 WKLDEVINLFNL--PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 105 (348)
Q Consensus 29 ls~~e~~~Ll~~--~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 105 (348)
||++|++.||+. ++.+|++.|+.+|++++ |++|+++.+..++ |++|+++|.||+++... .....|. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~-g~~v~~~~~~~i~~T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIV-GDTVTYVVNRNINFTNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhc-CCeEEEEeeeccccccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999964 57899999999988877 9999987655554 99999999999998753 2334575 89999999
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHHhCCCee
Q psy14485 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+++.+.+.|+++|+|+||. .| ..+.+++.++++.|++. ++++++ +.|.+++|.++.||+||++++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~-~p-~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i 155 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGI-HP-DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHCCCCEEEEEeCC-CC-CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccc
Confidence 9999999999999999773 33 45789999999999985 566654 468889999999999999999
Q ss_pred ec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.. +.|+ ++++++.+++++ ++++|+++++.++++|+++++++|+|++||.+|+++++.++++++ ++..+|..|+|.
T Consensus 156 ~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~ 233 (343)
T TIGR03551 156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPL 233 (343)
T ss_pred cCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEec
Confidence 84 6788 689999999975 999999999999999999999999999999999999999999999 788889999986
Q ss_pred C----CCCCCCC----CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCCC
Q psy14485 250 K----GTPLYGS----SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDNT 318 (348)
Q Consensus 250 ~----gT~l~~~----~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~ 318 (348)
| |||+++. +++++++.++++|++|+++|+..++++++|.++++..++.+|.+|||++ +.++++...+|.
T Consensus 234 ~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~ 313 (343)
T TIGR03551 234 PFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGA 313 (343)
T ss_pred cccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceecccccccCC
Confidence 6 9999742 4579999999999999999997666666678888887899999999998 345566555543
Q ss_pred C------chHHHHHHHHcCCCchhhhh
Q psy14485 319 K------TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 319 ~------~~~~~~~i~~~G~~p~~~~~ 339 (348)
. .+++.++|+++||+|++|+-
T Consensus 314 ~~~~~~~~~~~~~~i~~~g~~~~~r~~ 340 (343)
T TIGR03551 314 SHGEYLSPEELEAIIEDAGRIPKQRTT 340 (343)
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 3 47999999999999999973
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=376.61 Aligned_cols=312 Identities=17% Similarity=0.267 Sum_probs=266.3
Q ss_pred hhcccCCCCCHHHHHHhhcC-C---hHHHHHHHHHHHHhhcCCCceEEEEE--EEeecCCCCCCCCcCCCCCCCCCCCcc
Q psy14485 21 ISSSQSLIWKLDEVINLFNL-P---FNDLLFRAQKVHRKYFDANEIELAVL--LSIKTGGCTEDCGYCPQSTHYNTEITA 94 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~-~---~~~l~~~A~~~~~~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~ 94 (348)
.+...++++|++|++.||+. + +.+|+..|+++|+++| |++|+++.+ +++ |+.|+.+|.||+|++.. ....+
T Consensus 12 ~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~~~~~~~i~~-Tn~C~~~C~fC~~~~~~-~~~~~ 88 (371)
T PRK07360 12 ERARKGKDLSKEDALELLETTEPRRIFEILELADRLRKEQV-GDTVTYVVNRNINF-TNICEGHCGFCAFRRDE-GDHGA 88 (371)
T ss_pred HHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-CCeEEEEeccCccc-chhhhcCCccCCcccCC-CCCCC
Confidence 34467899999999999976 3 6789999999998888 899998654 555 99999999999999863 34567
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHH
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQA 161 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l 161 (348)
|. +++|||++.++.+.+.|+++|+|+|| ..|.....+++.++++.+++. ++.+++ +.|..+++.+
T Consensus 89 y~-ls~eeI~~~a~~a~~~G~~~i~l~~G-~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l 166 (371)
T PRK07360 89 FW-LTIAEILEKAAEAVKRGATEVCIQGG-LHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVL 166 (371)
T ss_pred ee-CCHHHHHHHHHHHHhCCCCEEEEccC-CCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHH
Confidence 85 89999999999999999999999977 556544589999999999974 566664 4688899999
Q ss_pred HHHHHhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy14485 162 YRLKKVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 162 ~~Lk~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.|++||++++.- +.|. ++++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++++.++++++ +
T Consensus 167 ~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~--~ 244 (371)
T PRK07360 167 KALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQ--Q 244 (371)
T ss_pred HHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhc--h
Confidence 9999999999972 3444 467777888865 999999999999999999999999999999999999999999999 8
Q ss_pred Ceeeccccccc----CCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---e
Q psy14485 239 ESVPINNLVQI----KGTPLYGSS----ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---F 307 (348)
Q Consensus 239 ~~i~~~~l~P~----~gT~l~~~~----~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~ 307 (348)
++.+|..|+|. +|||+++.. ++++.+.++++|++|+++|+..++++++|..++....+.+|.+|||++ +
T Consensus 245 ~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~~Gan~~~~~~ 324 (371)
T PRK07360 245 ETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALNCGANDLGGTL 324 (371)
T ss_pred hhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHhcCCccCcCcC
Confidence 89999999985 499998643 357888899999999999996666667777787777888999999999 7
Q ss_pred eCCeeccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy14485 308 YGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 308 ~~~~~~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
.++++.+.+| .+.+++.++|+++||+|++|+-
T Consensus 325 ~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~~ 362 (371)
T PRK07360 325 MEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDT 362 (371)
T ss_pred cccceecccCCCCCCCCCHHHHHHHHHHcCCceeeecC
Confidence 7888766565 3568999999999999999974
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=370.55 Aligned_cols=303 Identities=17% Similarity=0.266 Sum_probs=255.3
Q ss_pred CCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEE---EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy14485 27 LIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAV---LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 27 ~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~---~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
++||++|++.||+. |+.+|+..|+++|++++ |+.|.+++ +|++ |++|+++|.||+|++.++.. ..| .+++++
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~vr~~~~-g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~ee 77 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALERKQELH-PEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEE 77 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHH
Confidence 58999999999964 78999999999998888 67776544 4666 99999999999999865433 677 589999
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE----------ecCCCC-HHHHHHHHHhCC
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL----------TLGMLN-ENQAYRLKKVGL 169 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~----------~~g~l~-~e~l~~Lk~aG~ 169 (348)
|++.++++.+.|.++|+++||. + +..+.+++.++++.|++. .+.++. +.+.++ +|.++.|++||+
T Consensus 78 I~~~~~~a~~~g~~~i~~~gg~-~-~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl 155 (348)
T PRK08445 78 IDKKIEELLAIGGTQILFQGGV-H-PKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGL 155 (348)
T ss_pred HHHHHHHHHHcCCCEEEEecCC-C-CCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 9999999999999999999873 3 357899999999999985 355542 223344 899999999999
Q ss_pred Ceee-ccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 170 DYYN-HNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~-~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+++. .|+|+ ++++++.+++ +.+.++|+++++.+|++|+++++++|+|++||.+++++++..+++++ +++.+|..|
T Consensus 156 ~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~f 233 (348)
T PRK08445 156 SSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRAF 233 (348)
T ss_pred CCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEE
Confidence 9997 58999 7999999977 56999999999999999999999999999999999999999999999 666554444
Q ss_pred c----ccCCCCCCCC----CCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCccee---eeCCeecc
Q psy14485 247 V----QIKGTPLYGS----SILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLT 314 (348)
Q Consensus 247 ~----P~~gT~l~~~----~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~ 314 (348)
+ +.+|||++.. +++++++.++++|++|+++|+ .+|+++ |..++...++.+|.+||||+ +.++++..
T Consensus 234 i~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~--~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~ 311 (348)
T PRK08445 234 ILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSS--WVTQGSYIGQLALLFGANDLGSTMMEENVVK 311 (348)
T ss_pred eccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCC--CcccCHHHHHHHHhcCCccCccccccccchh
Confidence 3 3399999853 468999999999999999999 566655 46788888899999999999 55677777
Q ss_pred CCCCC----chHHHHHHHHcCCCchhhhh
Q psy14485 315 TDNTK----TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 315 ~~g~~----~~~~~~~i~~~G~~p~~~~~ 339 (348)
.+|.+ .+++.++|+++||+|++|+-
T Consensus 312 ~ag~~~~~~~~~~~~~i~~~g~~p~~r~t 340 (348)
T PRK08445 312 AAGASFRMNQAEMIELIKDIGEIPAKRNT 340 (348)
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 77754 37889999999999999984
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=373.69 Aligned_cols=313 Identities=21% Similarity=0.281 Sum_probs=271.3
Q ss_pred hhhhhcccCCCCCHHHHHHhhcC----ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy14485 18 NNAISSSQSLIWKLDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 18 ~~~~~~~~~~~ls~~e~~~Ll~~----~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
..+.+...++.||++|++.||+. ++.+|+..|+++|+++| |++|++++++++ |++|+++|.||+|+..+.. .
T Consensus 25 ~~~~~il~g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~~--~ 100 (371)
T PRK09240 25 ADVERALNKDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRF-GNTISLYTPLYL-SNYCANDCTYCGFSMSNKI--K 100 (371)
T ss_pred HHHHHHHhcCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHc-CCEEEEEeceEE-cccccCcCCcCCCCCCCCC--c
Confidence 34455577899999999999985 26788999999999888 899999999999 9999999999999876432 3
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++ .++++||+++++.+.+.|+++|+|+|| .+|...+.+++.++++.+++....++++.+.++.+.++.|+++|+++++
T Consensus 101 ~~-~ls~eEI~~~a~~~~~~Gv~~i~lvgG-e~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 101 RK-TLDEEEIEREMAAIKKLGFEHILLLTG-EHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVT 178 (371)
T ss_pred cc-cCCHHHHHHHHHHHHhCCCCEEEEeeC-CCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEE
Confidence 43 689999999999999999999999997 5666678999999999999764456677889999999999999999999
Q ss_pred ccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCC----CCCeeecc
Q psy14485 174 HNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----YPESVPIN 244 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~----~~~~i~~~ 244 (348)
+++|| +++.|+.+++ +|++++++++++.++++|+. +++++|+|+||+.+|+.+++..+++|+. ...+|+|+
T Consensus 179 i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 258 (371)
T PRK09240 179 VYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFP 258 (371)
T ss_pred EEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecC
Confidence 99999 7999999974 78999999999999999995 9999999999999999999999998872 12479999
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchh---hHHHHHHhCcceeeeCCeecc-C----
Q psy14485 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGET---TQAFCFLAGANSIFYGDKLLT-T---- 315 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~~~---~~~~~l~~GAn~~~~~~~~~~-~---- 315 (348)
.|.|.+| |+.+.+++++.+++++++++|+++|+..|++++|++ .+++. .+...+.+| |+.+.|+|..+ .
T Consensus 259 ~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~y~~~~~~~~q 336 (371)
T PRK09240 259 RLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGGYADDHKELEQ 336 (371)
T ss_pred ccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCCcCCCCCCcCC
Confidence 9999999 999888999999999999999999999999999984 44332 234566775 88888997643 2
Q ss_pred ----CCCCchHHHHHHHHcCCCchhhh
Q psy14485 316 ----DNTKTNDDSKLLKKLGINTRNIK 338 (348)
Q Consensus 316 ----~g~~~~~~~~~i~~~G~~p~~~~ 338 (348)
+|++.+++.+||+++||+|+..+
T Consensus 337 f~~~~~r~~~~~~~~i~~~g~~~~~~~ 363 (371)
T PRK09240 337 FEISDDRSVEEVAAALRAKGLQPVWKD 363 (371)
T ss_pred ccCCCCCCHHHHHHHHHHCCCeeccch
Confidence 68999999999999999997654
|
|
| >KOG2900|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=341.79 Aligned_cols=317 Identities=49% Similarity=0.854 Sum_probs=293.8
Q ss_pred hhcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCH
Q psy14485 21 ISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSI 100 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ 100 (348)
..-.+...+|++|+.++++.|+.+|...|+.+.|++++..+|..|.+++|+|+||..+|+||++++.++.+++.-+.+..
T Consensus 40 ~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~ 119 (380)
T KOG2900|consen 40 SLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKV 119 (380)
T ss_pred hccCCcccccHHHHHHHhcchHHHHHHHHHHHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhH
Confidence 33356888999999999999999999999999999998999999999999999999999999999988888777778899
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCc--ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++++.++..|-.+||++..+.+... ..+.++.++++.++..++++|+..|.++++..+.||+||+..++++++|
T Consensus 120 DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDT 199 (380)
T KOG2900|consen 120 DEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDT 199 (380)
T ss_pred HHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccc
Confidence 99999999999999999999988654422 3567889999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC--
Q psy14485 179 SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-- 256 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-- 256 (348)
+.|.|.++-...+++++++++..++++|+++|++.|+|+||..+|.+-.+..|..+..+|++++++.++|.+|||+.+
T Consensus 200 SREyYskvItTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~ 279 (380)
T KOG2900|consen 200 SREYYSKVITTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEK 279 (380)
T ss_pred hhhhhcccceecchHHHHHHHHHHHHhcceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhh
Confidence 999999999999999999999999999999999999999999999999999999998889999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchh
Q psy14485 257 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~ 336 (348)
..++..++++++++.+|+++|++.|++++||..+....+.+++.+|||+++.|+..+|+..-.-+++..|+...|++|.+
T Consensus 280 ~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~ 359 (380)
T KOG2900|consen 280 SKKLQIDEILRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPME 359 (380)
T ss_pred cccccHHHHHHHHhhhheechHHHHHHhccccccchhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCc
Confidence 56788999999999999999999999999998888888899999999999999998888877889999999999999976
Q ss_pred h
Q psy14485 337 I 337 (348)
Q Consensus 337 ~ 337 (348)
-
T Consensus 360 ~ 360 (380)
T KOG2900|consen 360 A 360 (380)
T ss_pred c
Confidence 3
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=369.37 Aligned_cols=306 Identities=17% Similarity=0.250 Sum_probs=262.3
Q ss_pred CCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy14485 27 LIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 27 ~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
+++|++|++.||+. ++.+|+..|+++|+++|.|++|+++.+.+++ |++|+.+|.||++++... ....| .+++++|+
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~-~~~~~-~ls~eei~ 78 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAPG-HPEGY-VLSVEEIL 78 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCCC-Ccccc-CCCHHHHH
Confidence 47999999999975 6899999999998877658999988765555 999999999999876432 11234 58999999
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEE-----------EEecCCCCHHHHHHHHHhCCCe
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LET-----------CLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i-----------~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
+.++.+.+.|+++|+|+||. .| ..+.+++.++++.+++.+ +++ +.+.|.++++.++.|+++|+++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~-~p-~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~ 156 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGV-NP-DLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDS 156 (340)
T ss_pred HHHHHHHHcCCcEEEEecCC-CC-CCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCc
Confidence 99999999999999999873 33 467889999999999754 332 1245666799999999999999
Q ss_pred eec-cCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 172 YNH-NLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~-g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+ ++|+ ++++++.+++. .++++|+++++.++++|+++++++|+|+|||.+++++++.++++++ ++.++|..|+|
T Consensus 157 ~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP 234 (340)
T TIGR03699 157 IPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIP 234 (340)
T ss_pred CCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEe
Confidence 995 7999 79999999875 5999999999999999999999999999999999999999999999 78877777777
Q ss_pred c----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCCCCc-
Q psy14485 249 I----KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDNTKT- 320 (348)
Q Consensus 249 ~----~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~- 320 (348)
. +||||++.+++++++.++++|++|+++|+ .+++++||..++.+.++.+|.+|||++ +..+.+++++|.+.
T Consensus 235 ~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~ 313 (340)
T TIGR03699 235 WTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGATHR 313 (340)
T ss_pred ecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCCCC
Confidence 4 79999988889999999999999999998 667777888888788899999999993 44456778888887
Q ss_pred ---hHHHHHHHHcCCCchhhhh
Q psy14485 321 ---NDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 321 ---~~~~~~i~~~G~~p~~~~~ 339 (348)
+++.++|+++|++|++|+-
T Consensus 314 ~~~~~~~~~i~~~g~~~~~r~~ 335 (340)
T TIGR03699 314 ASREEIIRIIREAGFIPAQRDT 335 (340)
T ss_pred CCHHHHHHHHHHcCCCeeeecC
Confidence 9999999999999999973
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=367.53 Aligned_cols=307 Identities=17% Similarity=0.189 Sum_probs=261.5
Q ss_pred cCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy14485 25 QSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
.+++||++|++.|++. |+.+|+..|+++|+++|.|+.|+++.+.+++ ||.|+.+|.||+|++..+. ..+| .++++|
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~-~~~y-~ls~ee 80 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPHS-SDAY-LLSFDE 80 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCccchhhhcCCccCCccCCCCC-cccc-ccCHHH
Confidence 4789999999999964 7899999999999887757999977665555 9999999999999985433 3567 599999
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEE-----------EEecCCCCHHHHHHHHHhCC
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLET-----------CLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i-----------~~~~g~l~~e~l~~Lk~aG~ 169 (348)
+++.++++.+.|+++|+|+|| .+| ..+.+++.++++.|++. ++.+ +.+.|.+++|.++.|++||+
T Consensus 81 i~~~a~~~~~~G~~~i~i~gG-~~p-~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl 158 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLLQGG-VHP-QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQ 158 (350)
T ss_pred HHHHHHHHHHCCCCEEEEeCC-CCC-CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCc
Confidence 999999999999999999977 555 47899999999999974 3543 33589999999999999999
Q ss_pred Ceeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 170 DYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+++.. ++|+ ++++.+.++|.+ +.++|+++++.||++|+++++++|||+|||.+|+++++..+++++ .+...|..|
T Consensus 159 ~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~f 236 (350)
T PRK05927 159 RTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFYSF 236 (350)
T ss_pred ccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeee
Confidence 99998 8999 678888888766 689999999999999999999999999999999999999999999 455678888
Q ss_pred ccc----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCc-eeccccccccchhhHHHHHHhCcceee---eCCeeccCC
Q psy14485 247 VQI----KGTPLYGS--SILDPLEFIRTIAVARITMPTSR-IRMSAGRKEMGETTQAFCFLAGANSIF---YGDKLLTTD 316 (348)
Q Consensus 247 ~P~----~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~-i~~s~g~~~l~~~~~~~~l~~GAn~~~---~~~~~~~~~ 316 (348)
+|. ++||++.. +++++++.++++|++|+++|+.. ++.+ |..++.+..+.+|.+||||+. ..+++.+.+
T Consensus 237 Ip~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~i~~~--w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~a 314 (350)
T PRK05927 237 IPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDHIAAS--WFGEGKEEGAKGLHYGADDFGGTILDESVHKCT 314 (350)
T ss_pred eecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCcccCC--ccccCHHHHHHHHhCCCccccCCCccceeeccC
Confidence 886 78999754 26999999999999999999854 4444 566778888999999999993 445666666
Q ss_pred CCC----chHHHHHHHHcCCCchhhhh
Q psy14485 317 NTK----TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 317 g~~----~~~~~~~i~~~G~~p~~~~~ 339 (348)
|.+ .+++.++|+++||+|++|+-
T Consensus 315 g~~~~~~~~~l~~~i~~~G~~~~~R~~ 341 (350)
T PRK05927 315 GWDLQSSEEEICAMILSEGFIPVERNT 341 (350)
T ss_pred CCCCcCCHHHHHHHHHHcCCCeeeecC
Confidence 655 47889999999999999974
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=354.97 Aligned_cols=272 Identities=23% Similarity=0.366 Sum_probs=247.7
Q ss_pred CCHHHHHHhhcCC-h---HHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy14485 29 WKLDEVINLFNLP-F---NDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 29 ls~~e~~~Ll~~~-~---~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
||++|++.||+.+ . .+|++.|+.+|++++ |++|++++++++ |++|+++|.||+++..+ ....+|+ +++++++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~ 76 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYV-GDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEIL 76 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHH
Confidence 6899999999863 2 359999999998888 899999999999 99999999999998753 2234664 7999999
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHH
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKL 182 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~ 182 (348)
++++.+.+.|++.|+|+||. ++ ..+.+++.++++.+++ .++.+++++|.++++.++.|+++|++++.+|+|| ++++
T Consensus 77 ~~~~~~~~~g~~~i~l~gG~-~~-~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQSGE-DP-YYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred HHHHHHHHCCCCEEEEecCC-CC-CCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 99999999999999999873 33 3467899999999998 5788888999999999999999999999999999 7999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCC
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILD 261 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~ 261 (348)
++.+++++++++++++++.++++|+.+++++|+|+ |||.+++.++++++++++ ++.+++++|+|.||||+++.++++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~ 232 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGS 232 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCC
Confidence 99999999999999999999999999999999999 999999999999999999 899999999999999999988899
Q ss_pred HHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeee
Q psy14485 262 PLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 262 ~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
.++.+++++++|+++|+.+|+.+++|..+++..++.+|.+|||++|.
T Consensus 233 ~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 233 LELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred HHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence 99999999999999999999888788888888889999999999975
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=348.13 Aligned_cols=292 Identities=50% Similarity=0.876 Sum_probs=253.0
Q ss_pred hcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCE
Q psy14485 38 FNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR 117 (348)
Q Consensus 38 l~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~ 117 (348)
++.|+.+|++.|++++++.|.|+.|+++++++++|++|+++|.||+++..+......++.+++++++++++.+.+.|+++
T Consensus 2 ~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 2 FETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 44478899999999999877799999999999889999999999999876432223445689999999999988899999
Q ss_pred EEEeccCCCCCccc-HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHH
Q psy14485 118 FCMGAAWRELKDRD-LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRL 196 (348)
Q Consensus 118 i~l~gg~~~~~~~~-~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~ 196 (348)
|++++++..+.... .+++.++.+.+++.++.+.++.|.+++|.++.|+++|++++.+++|+++++++.+++++++++++
T Consensus 82 ~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~ 161 (296)
T TIGR00433 82 FCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRV 161 (296)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHH
Confidence 87755434443322 44556666666667888888999999999999999999999999997799999999999999999
Q ss_pred HHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q psy14485 197 NTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITM 276 (348)
Q Consensus 197 ~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~l 276 (348)
++++.++++|+.+++++|+|++||.+++.++++++.+++ ++.+++++++|.||||+++.++++.++++++++.+|+++
T Consensus 162 ~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~l 239 (296)
T TIGR00433 162 DTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIM 239 (296)
T ss_pred HHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999998 899999999999999999988999999999999999999
Q ss_pred CCCceecccccc-ccchhhHHHHHHhCcceeeeCCeeccCCCCCch-HHHHHHHHcCC
Q psy14485 277 PTSRIRMSAGRK-EMGETTQAFCFLAGANSIFYGDKLLTTDNTKTN-DDSKLLKKLGI 332 (348)
Q Consensus 277 p~~~i~~s~g~~-~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~-~~~~~i~~~G~ 332 (348)
|+..|++++++. .++...++.++.+|||.++.|+|+ |+.|++.. ++.+|++++||
T Consensus 240 p~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~-~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 240 PKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYL-TTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred CcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcc-cCCCCCCcHHHHHHHHHcCC
Confidence 999999887764 555444455999999999999865 88888876 99999999996
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=360.53 Aligned_cols=311 Identities=20% Similarity=0.263 Sum_probs=266.8
Q ss_pred hhhhhcccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy14485 18 NNAISSSQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 18 ~~~~~~~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
..+.+...++.||++|++.|++.+ +.+|+..|+++|+++| |++|+++.++++ |+.|+++|.||+|+..+. ..
T Consensus 24 ~~~~~~l~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~--~~ 99 (366)
T TIGR02351 24 ADVERALNKRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRF-GNTISLFTPLYL-SNYCSNKCVYCGFSMSNK--IK 99 (366)
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHc-CCEEEEEeeeeE-CccccCCCCcCCCCCCCC--Cc
Confidence 344555678999999999999762 6789999999998888 899999999998 999999999999987542 34
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++ .++++||.+.++.+.+.|+++|+++|| ++|...+.+++.++++.+++....++++.+.++.+.++.|+++|+++++
T Consensus 100 ~~-~Ls~eEI~~~a~~~~~~Gv~~i~lvgG-e~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 100 RK-KLNEEEIEREIEAIKKSGFKEILLVTG-ESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVT 177 (366)
T ss_pred cC-cCCHHHHHHHHHHHHhCCCCEEEEeeC-CCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEE
Confidence 44 589999999999999999999999976 5666678999999999999864445556678999999999999999999
Q ss_pred ccCCC-CHHHHhccC---CCCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCC----CCCeeecc
Q psy14485 174 HNLDT-SPKLYGDII---STRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----YPESVPIN 244 (348)
Q Consensus 174 ~g~et-~~e~l~~i~---~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~----~~~~i~~~ 244 (348)
+++|| +++.|+.++ +.|++++++++++.++++|+. +++++|+|+|++.++..+++..++.|+. ...+|+++
T Consensus 178 i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 257 (366)
T TIGR02351 178 VYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP 257 (366)
T ss_pred EEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 99999 699999988 678999999999999999997 9999999999999999998888888873 12689999
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccch---hhHHHHHHhCcceeeeCCeeccCCC---
Q psy14485 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGE---TTQAFCFLAGANSIFYGDKLLTTDN--- 317 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~~---~~~~~~l~~GAn~~~~~~~~~~~~g--- 317 (348)
.+.|.+| |+....+.++.+.+++++++|+++|+..|++++|++ .+++ ..+...+.+ +|+.+.|+|. ++.|
T Consensus 258 ~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~y~-~~~~~~~ 334 (366)
T TIGR02351 258 RLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGGYS-SEKKGLE 334 (366)
T ss_pred ccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeecc-CcccCCCCcC-CCCCCcC
Confidence 9999999 998888999999999999999999999999999883 4432 233334566 7887888855 6666
Q ss_pred -------CCchHHHHHHHHcCCCchhh
Q psy14485 318 -------TKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 318 -------~~~~~~~~~i~~~G~~p~~~ 337 (348)
++.+++.+||+++||+|+-.
T Consensus 335 qf~~~d~r~~~~~~~~i~~~g~~~~~~ 361 (366)
T TIGR02351 335 QFEISDERSVAEVEEDLRSKGLQPVWK 361 (366)
T ss_pred cccCCCCCCHHHHHHHHHHCCCeeccc
Confidence 78899999999999999743
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=378.79 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=265.1
Q ss_pred ccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccC
Q psy14485 24 SQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILS 99 (348)
Q Consensus 24 ~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 99 (348)
..|++||.+|++.||+. ++.+|+..|+++|++++ |+.|+++.+.+++ ||.|+.+|.||+|++.. .....|. ++
T Consensus 482 ~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~-G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~-~~~~~y~-Ls 558 (843)
T PRK09234 482 RDPAGLTDDEALALFTADGPALEAVCRLADDLRRDVV-GDDVTYVVNRNINFTNICYTGCRFCAFAQRK-TDADAYT-LS 558 (843)
T ss_pred hcCCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeeceecCCCCCCCCcccccccCC-CCCCccc-CC
Confidence 46889999999999974 57899999999998887 9999987766655 99999999999999863 3446785 89
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHH
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKK 166 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~ 166 (348)
++||++.++++.+.|+++|+|+|| .+| ..+.+++.++++.||+. ++++++ +.|...+|.++.|++
T Consensus 559 ~eeI~~~a~ea~~~G~tev~i~gG-~~p-~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 559 LDEVADRAWEAWVAGATEVCMQGG-IHP-ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecC-CCC-CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999987 555 46789999999999985 566653 357888999999999
Q ss_pred hCCCeeecc-CCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 167 VGLDYYNHN-LDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 167 aG~~~i~~g-~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
||+++++.+ -|. ++++.+.++|++ +.++|+++++.+|++|+++++++|||++||.+|+++++..+++++ .+..+|
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq--~~tgGf 714 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQ--DRTGGF 714 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcC--cccCCe
Confidence 999999974 444 578888899855 899999999999999999999999999999999999999999999 788888
Q ss_pred ccccc----cCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy14485 244 NNLVQ----IKGTPLY----GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 244 ~~l~P----~~gT~l~----~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
..|+| .++||++ ..+.++..+.++++|++|++||+..+++.++|.+++...++.+|.+||||+ ++++++
T Consensus 715 ~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~GaNDlgGtl~ee~i 794 (843)
T PRK09234 715 TEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGGANDLGGTLMEETI 794 (843)
T ss_pred eeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcCCcCccccccccee
Confidence 88888 5788885 236699999999999999999975545556678998888899999999999 556777
Q ss_pred ccCCCCC------chHHHHHHHHcCCCchhhhh
Q psy14485 313 LTTDNTK------TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g~~------~~~~~~~i~~~G~~p~~~~~ 339 (348)
...+|+. .+++.++|+++||+|++|+-
T Consensus 795 ~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R~t 827 (843)
T PRK09234 795 SRMAGSEHGSAKTVAELEAIAEGAGRPARQRTT 827 (843)
T ss_pred eeccCCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 7666654 37889999999999999974
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=352.70 Aligned_cols=325 Identities=18% Similarity=0.311 Sum_probs=274.9
Q ss_pred ccccccccchHHHhhhhhc-ccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCC
Q psy14485 5 IIQSSKESNSIKKNNAISS-SQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDC 79 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C 79 (348)
+|..++...+.+.+.+.+. ..+++||++|++.||+.+ +.+|+..|+++++++| |++|.+++++++ ||.|+++|
T Consensus 21 ~l~~~~~~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~-Gn~I~lfapLyi-SN~C~n~C 98 (469)
T PRK09613 21 LLEKAKNPDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIY-GNRIVLFAPLYI-SNYCVNNC 98 (469)
T ss_pred HHHhccCCCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHc-CCEEEEEEeccc-cCCCCCCC
Confidence 4555565666655555444 578999999999999862 5789999999998888 999999999999 99999999
Q ss_pred CcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C--cEEEEec
Q psy14485 80 GYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G--LETCLTL 153 (348)
Q Consensus 80 ~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~--~~i~~~~ 153 (348)
.||+|++.. ....+| .+++|||+++++.+.+.|+++|+|++| ++|+..+.+++.++++.|++. + ..++++.
T Consensus 99 ~YCgfs~~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsG-e~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini 175 (469)
T PRK09613 99 VYCGFRRSN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAG-EDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNI 175 (469)
T ss_pred ccCCCccCC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeC-CCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEe
Confidence 999999864 345667 589999999999999999999999977 566677899999999999973 2 3688899
Q ss_pred CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHH
Q psy14485 154 GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 154 g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l 228 (348)
|.++.+.++.|+++|++++.+.+|| ++++|+.+++ +|++++++++++.++++|+. |++++|+|+|++.+|.+.++
T Consensus 176 g~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~ 255 (469)
T PRK09613 176 APTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLL 255 (469)
T ss_pred ecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHH
Confidence 9999999999999999999999999 8999999875 58999999999999999997 99999999999999999999
Q ss_pred HHHHhcCC----CCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCc
Q psy14485 229 FQLANLNP----YPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 229 ~~l~~l~~----~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GA 303 (348)
..++.|+. .|++|+++.|.|.+||||.+.+ +++++++++++|++|+++|...|.+|+ |+. +.+....+..|+
T Consensus 256 ~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lSt-RE~--~~~r~~~~~~gv 332 (469)
T PRK09613 256 MHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILST-RES--AELRREVLELGV 332 (469)
T ss_pred HHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeec-CCC--HHHHHHHHhhcc
Confidence 88888821 2788999999999999997665 589999999999999999999999886 544 556777888898
Q ss_pred ceeeeCCe------ec-----------cCCCCCchHHHHHHHHcCCCchhh
Q psy14485 304 NSIFYGDK------LL-----------TTDNTKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 304 n~~~~~~~------~~-----------~~~g~~~~~~~~~i~~~G~~p~~~ 337 (348)
..+..|.+ .. ..+.++.+++.+.|.+.||.|+-+
T Consensus 333 t~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p~~c 383 (469)
T PRK09613 333 SQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIPSFC 383 (469)
T ss_pred eeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 88854422 11 123455579999999999999754
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=369.28 Aligned_cols=312 Identities=23% Similarity=0.285 Sum_probs=266.7
Q ss_pred hhhcccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCC-----ceEEEEEEEee-cCCCCCCCCcCCCCCCCCC
Q psy14485 20 AISSSQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDAN-----EIELAVLLSIK-TGGCTEDCGYCPQSTHYNT 90 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~-----~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~ 90 (348)
+.+...|++||.+|++.|++. ++.+|+..|+++|+++| |+ .|+|+..++++ ||.|.++|.||+|++..+.
T Consensus 18 l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~~-G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~ 96 (843)
T PRK09234 18 LRRARDGVTLDVDEAAVLLTARGDDLADLCASAARVRDAGL-GAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGK 96 (843)
T ss_pred HHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHHHHHHHHc-CCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCCCC
Confidence 344567999999999999853 57899999999999888 88 99999755555 9999999999999986432
Q ss_pred CCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---------------cHHHHHHHHHHHHh-cCcEEEEecC
Q psy14485 91 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---------------DLDNIENMICEVKK-IGLETCLTLG 154 (348)
Q Consensus 91 ~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---------------~~~~~~~l~~~i~~-~~~~i~~~~g 154 (348)
...| .+++|||++.++++.+.|+++++|++| ..|... .++++.++++.+++ .++..++|+|
T Consensus 97 -~~~~-~ls~eEIl~~a~~~~~~G~~e~l~t~G-~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G 173 (843)
T PRK09234 97 -LEAA-YLSPDEVLDIARAGAAAGCKEALFTLG-DRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPG 173 (843)
T ss_pred -Cccc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeC
Confidence 3445 599999999999999999999999998 455421 47999999999997 5888899999
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCC-CHHHHh------ccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHH
Q psy14485 155 MLNENQAYRLKKVGLDYYNHNLDT-SPKLYG------DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAEL 227 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~------~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~ 227 (348)
.++.+.++.|+++|++ +.+.+|| ++++|. .++|++.+++|+++++.++++|+++++++|||+|||.+|++++
T Consensus 174 ~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiGEt~edRve~ 252 (843)
T PRK09234 174 VMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAES 252 (843)
T ss_pred CCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECCCCHHHHHHH
Confidence 9999999999999997 7889999 788874 4567788999999999999999999999999999999999999
Q ss_pred HHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCc
Q psy14485 228 IFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 228 l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GA 303 (348)
+..++++++ +++++.+++|.|.|||||.+.++++++++++++|++|++||+ .+|+++| ..++.+..+.+|.+||
T Consensus 253 L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~~--~l~g~~~~~~~L~~Ga 330 (843)
T PRK09234 253 LFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAPP--NLVSGDECAALLGAGI 330 (843)
T ss_pred HHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCcc--ccCCHHHHHHHHhcCC
Confidence 999999974 578899999999999999999999999999999999999976 5888876 5556777889999999
Q ss_pred ceeeeCCeeccC-------CCCCchHHHHHHHHcCCCchhhhh
Q psy14485 304 NSIFYGDKLLTT-------DNTKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 304 n~~~~~~~~~~~-------~g~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
||+ +|....+. ..++.+++.++++++||+|++|+-
T Consensus 331 nD~-GG~~~~~~d~~~p~~~~~~~~~l~~~~~~aG~~~~eR~t 372 (843)
T PRK09234 331 DDW-GGVSPLTPDHVNPERPWPQLDELAAVTAEAGFTLVERLT 372 (843)
T ss_pred Ccc-cchhhhHhhccCccCCCCCHHHHHHHHHHcCCCcccccC
Confidence 998 33222222 233458999999999999999974
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=326.42 Aligned_cols=314 Identities=19% Similarity=0.212 Sum_probs=258.3
Q ss_pred hhhcccCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccc
Q psy14485 20 AISSSQSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKI 97 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~ 97 (348)
+.++.+++++|++|++.|++. +...|...|+.+|+....|+.|+|..+++++ ||.|.++|.||+|++.. ...++| .
T Consensus 12 ~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~~~~y-~ 89 (370)
T COG1060 12 VEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKP-GDPKAY-T 89 (370)
T ss_pred HHHHhccCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCC-CCcccc-c
Confidence 455678999999999999986 5788999999998555558999999887777 99999999999999975 333677 5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE------------ecC-CCCHHHHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL------------TLG-MLNENQAYRL 164 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~------------~~g-~l~~e~l~~L 164 (348)
++++||.++++++.+.|+++++|+|| .+| ....+++.++++.+++....+++ +.+ ...+|.+++|
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG-~~p-~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~L 167 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGG-EHP-ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRL 167 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecC-cCC-CcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHH
Confidence 99999999999999999999999999 455 45678999999999984223221 233 4445669999
Q ss_pred HHhCCCeeeccCCC--CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CC
Q psy14485 165 KKVGLDYYNHNLDT--SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YP 238 (348)
Q Consensus 165 k~aG~~~i~~g~et--~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~ 238 (348)
|+||++.+..+..+ ++++.+.+++ +.+++.|+++++.|+++|++.+++++||++|+.+|+++|+..++++|+ +.
T Consensus 168 k~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~ 247 (370)
T COG1060 168 KEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGF 247 (370)
T ss_pred HHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999987666 3666667775 459999999999999999999999999999999999999999999986 45
Q ss_pred CeeecccccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC-C-ceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy14485 239 ESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPT-S-RIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 239 ~~i~~~~l~P~~gT-~l~~~~~~~~~~~~~~~a~~R~~lp~-~-~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
.++.+.+|.|.+++ +....++++..++++++|++|+++++ . +++.+ |.+++....+.++.+||||+ ++.+++
T Consensus 248 ~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~--w~~~g~~~~~~~l~~GanD~ggt~~~E~v 325 (370)
T COG1060 248 QEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQAS--WLRDGVILAQAALLSGANDLGGTGYEEKV 325 (370)
T ss_pred EEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCc--ccccchHHHHHHHHhCcccCcCCCccccc
Confidence 56666777777777 66666789999999999999999995 3 35555 46777777899999999999 333555
Q ss_pred ccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy14485 313 LTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
.+.+| ++.+++.++|+++||+|++|+-
T Consensus 326 ~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt 358 (370)
T COG1060 326 NPAAGAFSGDWRSVEELAALIKEAGRIPVERDT 358 (370)
T ss_pred ccccccccCCCCCHHHHHHHHHHcCCCeeeecc
Confidence 55555 3458999999999999999974
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=319.50 Aligned_cols=271 Identities=18% Similarity=0.330 Sum_probs=225.7
Q ss_pred eEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHH
Q psy14485 62 IELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 62 v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
|+|..+++++ |++|+++|.||+++..+.. .+.| .+++|+|++.++.+.+.|+++|+|+|| ..+ ..+.+++.++++
T Consensus 1 ~~~~~n~~i~~T~~C~~~C~FC~~~~~~~~-~~~~-~ls~eeI~~~~~~~~~~G~~~i~l~gg-~~~-~~~~~~~~~i~~ 76 (309)
T TIGR00423 1 VTFVVNRNINFTNICVGKCKFCAFRAREKD-KDAY-VLSLEEILEKVKEAVAKGATEVCIQGG-LNP-QLDIEYYEELFR 76 (309)
T ss_pred CEEeceeeecCccccccCCccCCCccCCCC-CCcc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCC-CCCHHHHHHHHH
Confidence 3555555555 9999999999999986432 2345 589999999999999999999999977 344 457889999999
Q ss_pred HHHhc--CcEEEE-----------ecCCCCHHHHHHHHHhCCCeee-ccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHH
Q psy14485 141 EVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGDIISTR-DYENRLNTLKNVRN 204 (348)
Q Consensus 141 ~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~aG~~~i~-~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~ 204 (348)
.|++. ++.++. +.|.+++|.++.|++||++++. .++|+ ++++++.+++++ +.++|+++++.+++
T Consensus 77 ~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~ 156 (309)
T TIGR00423 77 AIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 156 (309)
T ss_pred HHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 99985 355542 3466779999999999999997 59999 799999998755 99999999999999
Q ss_pred cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc----CCCC-CCCC--CCCCHHHHHHHHHHHHHHCC
Q psy14485 205 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI----KGTP-LYGS--SILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 205 ~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~----~gT~-l~~~--~~~~~~~~~~~~a~~R~~lp 277 (348)
+|+++++++|+|++||.+|+++++..+++++ ++..+|+.|+|. +||| +... +++++.+.++++|++|+++|
T Consensus 157 ~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 157 LGIPTTATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred cCCCceeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 788888888884 5888 7654 78999999999999999999
Q ss_pred CCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy14485 278 TSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 278 ~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+. .++.++|.+++++.++.+|.+|||++ +.++++.+.+| .+.+++.++|+++||+|++|+-
T Consensus 235 ~~-~~i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~ 304 (309)
T TIGR00423 235 NI-RNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDT 304 (309)
T ss_pred CC-ccceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 52 22444567888888899999999998 44566766654 2347999999999999999973
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=320.50 Aligned_cols=264 Identities=23% Similarity=0.368 Sum_probs=220.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---------------c
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---------------D 131 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---------------~ 131 (348)
+|++ ||+|+.+|.||+|+.... ....| .+++++|+++++.+.+.|+++++++|| .+|... .
T Consensus 7 ~i~~-tn~C~~~C~fCaf~~~~g-~~~~~-~l~~eeI~~~a~~~~~~G~~ei~l~~G-~~p~~~~~~~~~~l~~~~~~~~ 82 (322)
T TIGR03550 7 FIPL-TRLCRNRCGYCTFRRPPG-ELEAA-LLSPEEVLEILRKGAAAGCTEALFTFG-EKPEERYPEAREWLAEMGYDST 82 (322)
T ss_pred Eecc-ccCcCCCCccCCccccCC-Ccccc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCccccHHHHHHHHHhcCCccH
Confidence 4566 999999999999998642 22344 599999999999999999999999988 445321 2
Q ss_pred HHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhcc----CCCCCHHHHHHHHHHHHHc
Q psy14485 132 LDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI----ISTRDYENRLNTLKNVRNV 205 (348)
Q Consensus 132 ~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i----~~~~~~~~~~~~i~~~~~~ 205 (348)
.+++.++++.+++. ++..++++|.++++.++.|+++|++ +.+++|| ++.+++.+ ++++++++|+++++.++++
T Consensus 83 ~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~ 161 (322)
T TIGR03550 83 LEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRL 161 (322)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 47888888988864 7778899999999999999999986 5888999 57765544 4556789999999999999
Q ss_pred CCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cce
Q psy14485 206 GINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRI 281 (348)
Q Consensus 206 G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i 281 (348)
|+++++++|||+|||.+|+++++..++++++ ++..+.+.+|.|.||||+++.++++..+.++++|++|+++|+ .+|
T Consensus 162 Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I 241 (322)
T TIGR03550 162 KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISI 241 (322)
T ss_pred CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCee
Confidence 9999999999999999999999999999984 346777899999999999988889999999999999999975 688
Q ss_pred eccccccccchhhHHHHHHhCccee-----eeCCeeccCCC--CCchHHHHHHHHcCCCchhhhh
Q psy14485 282 RMSAGRKEMGETTQAFCFLAGANSI-----FYGDKLLTTDN--TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 282 ~~s~g~~~l~~~~~~~~l~~GAn~~-----~~~~~~~~~~g--~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+++| +++...++.+|.+||||+ +.+++. ++.+ .+.+++.++|+++||+|++|+-
T Consensus 242 ~~~~---~l~~~~~~~~L~~Gand~~gt~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~p~~R~t 302 (322)
T TIGR03550 242 QVPP---NLNREDYRLLLDAGIDDWGGVSPVTPDHV-NPEAPWPEIDELARATEEAGFTLKERLP 302 (322)
T ss_pred ecCC---ccChHHHHHHHhcCCccccCcccCchhhc-CCCCCCCCHHHHHHHHHHcCCCcccccC
Confidence 8885 555546899999999995 334544 3234 4578999999999999999975
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=308.91 Aligned_cols=273 Identities=18% Similarity=0.274 Sum_probs=230.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCC--CCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhCCCCE
Q psy14485 41 PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCT--EDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGATR 117 (348)
Q Consensus 41 ~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~G~~~ 117 (348)
|+.+|++.|+++|+++| |++|++++++++ |++|+ ++|.||++++..+. ..+.+..+++++|+++++.+.+.|++.
T Consensus 5 ~~~~L~~~A~~ir~~~f-G~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~ 82 (350)
T PRK06267 5 EILENSIKAFKLTEKHH-GNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKL 82 (350)
T ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCE
Confidence 57889999999999888 999999999998 99999 99999999985321 112344689999999999999999998
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHH
Q psy14485 118 FCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR 195 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~ 195 (348)
++++|| ..+ ..+.+.++++.++.. +..++++.|.++.+.+..++.+|+ .+++|| ++++++.++++++++++
T Consensus 83 ~~lsgG-~~~---~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~ 155 (350)
T PRK06267 83 EFISGG-YGY---TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKI 155 (350)
T ss_pred EEEecC-CCC---CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHH
Confidence 888877 333 346677777777653 456778899999988888877776 358999 69999999999999999
Q ss_pred HHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy14485 196 LNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 196 ~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
+++++.++++|+.+++++|+|+||+.+|+.++++++++++ ++.+++++|+|.||||+.+.++++++++++++|++|++
T Consensus 156 ~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~ 233 (350)
T PRK06267 156 KEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLN 233 (350)
T ss_pred HHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccchhhHHHHHHhCccee----eeCCeeccCCCCCchHHHHHH
Q psy14485 276 MPTSRIRMSAGRKEMGETTQAFCFLAGANSI----FYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 276 lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~----~~~~~~~~~~g~~~~~~~~~i 327 (348)
+|+..| .+++|.......+. ++.+|||++ +.|.| +|+.|++.+++++.-
T Consensus 234 lP~~~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~y-lt~~g~~~~~~~~~~ 286 (350)
T PRK06267 234 FPKIKI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSMY-GTKEGKRVENEIRWT 286 (350)
T ss_pred CCCCCc-chhhHhHhcchhhH-HhhcCcceeeccchhccC-cccCCCCHHHHHHHh
Confidence 999888 44556433334445 677999999 66774 588898887765543
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=299.60 Aligned_cols=273 Identities=22% Similarity=0.321 Sum_probs=220.6
Q ss_pred CCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-c-----
Q psy14485 59 ANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR-D----- 131 (348)
Q Consensus 59 g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-~----- 131 (348)
|+.|+|..+.+++ ||+|+.+|.||+|+.... .++.+++|+|+++++++.+.|+++|+|+||. +|... +
T Consensus 5 ~~~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~----~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~-~p~~~~~~~~~~ 79 (336)
T PRK06245 5 SKIVTYSRNVFIPLTYECRNRCGYCTFRRDPG----QPSLLSPEEVKEILRRGADAGCTEALFTFGE-VPDESYERIKEQ 79 (336)
T ss_pred CCeeEeecceeeeccccccCCCccCCCcCCCC----ccCcCCHHHHHHHHHHHHHCCCCEEEEecCC-CCccchhhhhhh
Confidence 8899998766555 999999999999987432 2235899999999999999999999999983 33221 1
Q ss_pred -----HHHHHHHHHH----HHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhcc---CCCCCHHHHHHH
Q psy14485 132 -----LDNIENMICE----VKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI---ISTRDYENRLNT 198 (348)
Q Consensus 132 -----~~~~~~l~~~----i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i---~~~~~~~~~~~~ 198 (348)
...+.++++. +.+.+...+++++.++++.++.|+++|+. +.+.+|| ++.+++.+ ++++++++++++
T Consensus 80 ~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~ 158 (336)
T PRK06245 80 LAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLET 158 (336)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHH
Confidence 1223333433 33345666789999999999999999864 6777899 67887544 677899999999
Q ss_pred HHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy14485 199 LKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 199 i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
++.+++.|+++++++|+|+|||.+++.+++..++++++ +++.+.+++|+|.+|||+...++++.++.+++++++|++
T Consensus 159 i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~ 238 (336)
T PRK06245 159 IENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLI 238 (336)
T ss_pred HHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999974 257889999999999999888889999999999999999
Q ss_pred CCC-CceeccccccccchhhHHHHHHhCccee-----eeCCeeccC-CCCCchHHHHHHHHcCCCchhhhhH
Q psy14485 276 MPT-SRIRMSAGRKEMGETTQAFCFLAGANSI-----FYGDKLLTT-DNTKTNDDSKLLKKLGINTRNIKIK 340 (348)
Q Consensus 276 lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~-----~~~~~~~~~-~g~~~~~~~~~i~~~G~~p~~~~~~ 340 (348)
+|+ ..|+++ + +++...++.+|.+|||++ ..++++.+. .+++.+++.++|+++|++|++|+--
T Consensus 239 l~~~i~i~~~--~-~~~~~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~ 307 (336)
T PRK06245 239 LPPDISIQVP--P-NLNRDTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWPLKERLPV 307 (336)
T ss_pred CCCCceEecC--C-ccchHHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCCcccccCc
Confidence 976 345544 3 677777888999999999 334555332 2456799999999999999999854
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=241.52 Aligned_cols=240 Identities=11% Similarity=0.115 Sum_probs=191.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.|.| |+|+.+|.||+|.+..... ...|.....+++..+++......+++|+|+|| +|+..+.+.+.++++.+++.
T Consensus 10 YiHi--PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGG--TPs~L~~~~l~~ll~~i~~~ 85 (353)
T PRK05904 10 YIHI--PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGG--TPNCLNDQLLDILLSTIKPY 85 (353)
T ss_pred EEEe--CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--ccccCCHHHHHHHHHHHHHh
Confidence 3555 9999999999998742211 22344345566666665443345788999988 57778889999999988863
Q ss_pred -----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-
Q psy14485 146 -----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL- 217 (348)
Q Consensus 146 -----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl- 217 (348)
.+.+.++|..+++|.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. +++++|+|+
T Consensus 86 ~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 86 VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred cCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 344556899999999999999999999999999 799999999999999999999999999996 999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCc-----ee-cc--cc--
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMPTSR-----IR-MS--AG-- 286 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R~~lp~~~-----i~-~s--~g-- 286 (348)
|||.+++.++++++.+++ |++++++.+.|.|||+++... .++++...+++..++..+.+.. |. .+ +|
T Consensus 166 gqt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~ 243 (353)
T PRK05904 166 ILKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYI 243 (353)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCcc
Confidence 999999999999999999 999999999999999998753 3677788889988888876532 21 11 12
Q ss_pred -ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 287 -RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 287 -~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+||+. ....++++++||.+.+.+.++
T Consensus 244 ~~hn~~yw~~~~ylg~G~gA~s~~~~~r~ 272 (353)
T PRK05904 244 SKHNLAYWRTKDWAAIGWGAHGFENNIEY 272 (353)
T ss_pred ccchHhHhCCCCEEEEcCCcCcccCCeEE
Confidence 23332 346788999999999766555
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=239.97 Aligned_cols=236 Identities=16% Similarity=0.218 Sum_probs=187.5
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC---------CccccccCHHHHHHHHHHHHh--CCCCEEEEeccCCCCCcccHHHHHH
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTE---------ITATKILSIESVITAAQKAKS--DGATRFCMGAAWRELKDRDLDNIEN 137 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~---------~~~~~~~~~eei~~~~~~~~~--~G~~~i~l~gg~~~~~~~~~~~~~~ 137 (348)
++.-++|+.+|.||+|+...... ..+| .+.+.++++.... .++++|+|+|| +|+..+.+.+.+
T Consensus 14 YiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~~~~i~~iy~GGG--Tps~l~~~~l~~ 87 (400)
T PRK07379 14 YIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEY----VEVLCQEIAITPSFGQPLQTVFFGGG--TPSLLSVEQLER 87 (400)
T ss_pred EEEeccccCcCCCCCCccccccccccccccchHHHH----HHHHHHHHHHhhccCCceeEEEECCC--ccccCCHHHHHH
Confidence 34459999999999997532111 0112 3455665554322 35788999988 566678899999
Q ss_pred HHHHHHhc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-
Q psy14485 138 MICEVKKI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN- 208 (348)
Q Consensus 138 l~~~i~~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~- 208 (348)
+++.+++. +.+ +.++|+.++.+.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.++++|+.
T Consensus 88 ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~ 167 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIEN 167 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 99998863 234 446789999999999999999999999999 899999999999999999999999999997
Q ss_pred eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc-
Q psy14485 209 ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR- 280 (348)
Q Consensus 209 i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~- 280 (348)
+++++|+|+ |||.+++.++++.+.+++ |++|+++.|.|.||||++.. .+++.++..+++..++..|....
T Consensus 168 v~~dlI~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy 245 (400)
T PRK07379 168 FSLDLISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY 245 (400)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 899999999 999999999999999999 99999999999999998752 45788999999999998886642
Q ss_pred ee--cc----cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 281 IR--MS----AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 281 i~--~s----~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+ ++ +| +||+. ....++|+++||.+.+.+.++
T Consensus 246 ~~yeisnfa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~ 288 (400)
T PRK07379 246 EHYEISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRF 288 (400)
T ss_pred ceeeeeheECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEE
Confidence 11 11 22 34332 345688999999998766544
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=235.79 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=184.1
Q ss_pred eecCCCCCCCCcCCCCCCCCC--CCccccccCHHHHHHH-HHHHH----hCCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNT--EITATKILSIESVITA-AQKAK----SDGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~--~~~~~~~~~~eei~~~-~~~~~----~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
+.-++|+.+|.||+|.+.... .+.+| .+.++++ ++... ...++.|+|+|| +|+..+.+.+.++++.+
T Consensus 11 iHIPFC~~~C~yC~f~~~~~~~~~~~~y----~~~l~~E~~~~~~~~~~~~~i~~iy~GGG--TPs~l~~~~l~~ll~~i 84 (370)
T PRK06294 11 IHIPFCTKKCHYCSFYTIPYKEESVSLY----CNAVLKEGLKKLAPLRCSHFIDTVFFGGG--TPSLVPPALIQDILKTL 84 (370)
T ss_pred EEeCCccCcCCCCcCcccCCCccCHHHH----HHHHHHHHHHHhhhhccCCceeEEEECCC--ccccCCHHHHHHHHHHH
Confidence 334999999999999874211 11123 2333333 22221 134778999888 57778889999999999
Q ss_pred Hhc---CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec
Q psy14485 143 KKI---GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL 217 (348)
Q Consensus 143 ~~~---~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl 217 (348)
++. .+.+.++|+.++++.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.++++|+. +++++|+|+
T Consensus 85 ~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl 164 (370)
T PRK06294 85 EAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGL 164 (370)
T ss_pred HhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 763 455567899999999999999999999999999 899999999999999999999999999995 999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc---eecc---
Q psy14485 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR---IRMS--- 284 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~---i~~s--- 284 (348)
|||.+++.++++.+.+++ |++++++++.|.||||++.. ..++.++...++..++..|.... ..++
T Consensus 165 Pgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeeeee
Confidence 999999999999999999 99999999999999998752 24677888899999888776532 1111
Q ss_pred -cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 285 -AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 -~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+| +||+. ....+.|+++||.+.+.|.++
T Consensus 243 ~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~ 276 (370)
T PRK06294 243 KPQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRS 276 (370)
T ss_pred CCCchhhhhhhhccCCCEEEEcCCcceecCCEEE
Confidence 21 24322 345678999999998766544
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=236.37 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=183.0
Q ss_pred eecCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHH-HhCC---CCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKA-KSDG---ATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~-~~~G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+.-|+|+.+|.||+|++..... ...| .+.+.++++.. ...| +..|+|+|| +|+..+.+.+.++++.++
T Consensus 5 iHiPFC~~~C~yC~f~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~v~~i~~GGG--tPs~l~~~~l~~ll~~i~ 78 (360)
T TIGR00539 5 IHIPFCENKCGYCDFNSYENKSGPKEEY----TQALCQDLKHALSQTDQEPLESIFIGGG--TPNTLSVEAFERLFESIY 78 (360)
T ss_pred EEeCCCcCcCCCCCCcccCcCccCHHHH----HHHHHHHHHHHHHhcCCCcccEEEeCCC--chhcCCHHHHHHHHHHHH
Confidence 3349999999999998752211 1223 34444444332 2233 788999988 466667788888888886
Q ss_pred hc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEe
Q psy14485 144 KI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGI 214 (348)
Q Consensus 144 ~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i 214 (348)
+. +.+ +.++|+.++++.++.|+++|+++|++|+|| ++++++.+++.|++++..++++.++++|+ .+++++|
T Consensus 79 ~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 79 QHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred HhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 42 334 456789999999999999999999999999 79999999999999999999999999999 5899999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCce-e--cc----
Q psy14485 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPTSRI-R--MS---- 284 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~i-~--~s---- 284 (348)
+|+ |||.+++.++++++.+++ +++++++++.|.||||++.. ..++.++..+++..++..+..... + ++
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 236 (360)
T TIGR00539 159 YGLPLQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAK 236 (360)
T ss_pred CCCCCCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcC
Confidence 999 999999999999999999 99999999999999999864 357788889999988887765321 1 11
Q ss_pred cc---cccc--chhhHHHHHHhCcceeeeCCee
Q psy14485 285 AG---RKEM--GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 ~g---~~~l--~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+| +||. ....++.++++||.+.+.+.++
T Consensus 237 ~~~~~~hn~~yw~~~~~lg~G~~A~s~~~~~~~ 269 (360)
T TIGR00539 237 AGYQVKHNLAYWGAKDYLGCGAGAHGCVANERF 269 (360)
T ss_pred CCHHHHHHHHhcCCCCEEEEcCCccccCCCeEE
Confidence 22 2332 2445688999999998766544
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=236.83 Aligned_cols=232 Identities=10% Similarity=0.138 Sum_probs=186.6
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCC--ccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTEI--TATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~--~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
++.-|+|+.+|.||+|++...... .+| .+.+.++++...+ ..+.+|+|+|| +|+..+.+.+.++++.+
T Consensus 8 YiHIPFC~~kC~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG--TPs~l~~~~L~~ll~~i 81 (380)
T PRK09057 8 YVHWPFCLAKCPYCDFNSHVRHAIDQARF----AAAFLRELATEAARTGPRTLTSIFFGGG--TPSLMQPETVAALLDAI 81 (380)
T ss_pred EEEeCCcCCcCCCCCCcccCcCcCCHHHH----HHHHHHHHHHHHHHcCCCCcCeEEeCCC--ccccCCHHHHHHHHHHH
Confidence 334599999999999987532111 123 4566666554332 35788999988 57778889999999999
Q ss_pred Hhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe
Q psy14485 143 KKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 214 (348)
Q Consensus 143 ~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i 214 (348)
++. .+.+.++|+.++.+.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.+++++..+++++|
T Consensus 82 ~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli 161 (380)
T PRK09057 82 ARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLI 161 (380)
T ss_pred HHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEee
Confidence 872 244567899999999999999999999999999 899999999999999999999999999889999999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCce-e--cc
Q psy14485 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSRI-R--MS 284 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~i-~--~s 284 (348)
+|+ |||.+++.+++..+.+++ |++++++++.|.||||++. ...++.++..+++..++.+|..... + ++
T Consensus 162 ~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s 239 (380)
T PRK09057 162 YARPGQTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEIS 239 (380)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhH
Confidence 999 999999999999999998 9999999999999999875 2357888899999999988865422 1 11
Q ss_pred ----cc---ccccc--hhhHHHHHHhCcceeee
Q psy14485 285 ----AG---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 285 ----~g---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
+| +||+. ....+.|+++||.+.+.
T Consensus 240 ~~a~~g~~~~hn~~yw~~~~~lG~G~gA~s~~~ 272 (380)
T PRK09057 240 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLT 272 (380)
T ss_pred HHcCCCchhhhHHHHhCCCCEEEEcCCcccccc
Confidence 22 23322 44577899999999863
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=236.65 Aligned_cols=232 Identities=13% Similarity=0.155 Sum_probs=184.3
Q ss_pred eecCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHHH----hCCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKAK----SDGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~----~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+.-|+|+.+|.||+|.+..... ...| .+.+.++++... ...+++|+|+|| +|+..+.+.+.++++.++
T Consensus 16 iHiPFC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG--TPs~l~~~~l~~ll~~i~ 89 (390)
T PRK06582 16 IHWPFCLSKCPYCDFNSHVASTIDHNQW----LKSYEKEIEYFKDIIQNKYIKSIFFGGG--TPSLMNPVIVEGIINKIS 89 (390)
T ss_pred EEeCCCcCcCCCCCCeeccCCCCCHHHH----HHHHHHHHHHHHHHccCCceeEEEECCC--ccccCCHHHHHHHHHHHH
Confidence 3349999999999998753221 1233 233444443322 234788999988 577778889999999888
Q ss_pred hc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee
Q psy14485 144 KI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII 215 (348)
Q Consensus 144 ~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~ 215 (348)
+. .+.+.++|+.++.+.++.|+++|++|+++|+|| ++++++.++|.|+.++..++++.+++++..+++++|+
T Consensus 90 ~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~ 169 (390)
T PRK06582 90 NLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIY 169 (390)
T ss_pred HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeec
Confidence 62 244556899999999999999999999999999 7999999999999999999999999997789999999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCc-----ee-
Q psy14485 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSR-----IR- 282 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~-----i~- 282 (348)
|+ |||.+++.++++.+.+++ |++|+++++.+.|||||+. ...++.++..+++..++..|.... |.
T Consensus 170 GlPgqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 247 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISN 247 (390)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeecee
Confidence 99 999999999999999998 9999999999999999974 246788999999999998876532 21
Q ss_pred cc-cc---ccccc--hhhHHHHHHhCcceeeeC
Q psy14485 283 MS-AG---RKEMG--ETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 283 ~s-~g---~~~l~--~~~~~~~l~~GAn~~~~~ 309 (348)
.+ +| +||+. ....+.|+++||.+.+.+
T Consensus 248 fa~~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~ 280 (390)
T PRK06582 248 YAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIE 280 (390)
T ss_pred eeCCChhhhhHHHHhcCCcEEEECCCeeecccC
Confidence 11 22 24322 345678999999998653
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=233.14 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=187.0
Q ss_pred cccCCCCCHHHHHHhhcCC------hHHHHHHHHHHHHhhcC---CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy14485 23 SSQSLIWKLDEVINLFNLP------FNDLLFRAQKVHRKYFD---ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 23 ~~~~~~ls~~e~~~Ll~~~------~~~l~~~A~~~~~~~~~---g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
....+++|.+|+.+.|..+ -.+|+...+...+.... .+.+ . +++.-++||.+|.||+|++.......
T Consensus 116 ~~~~~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~--s--LYihIPFC~~~C~YCsf~s~~~~~~~ 191 (488)
T PRK08207 116 KLLDEGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEV--S--IYIGIPFCPTRCLYCSFPSYPIKGYK 191 (488)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCce--E--EEEecCCCCCcCCCCCCccccCCCCc
Confidence 3456788999998876532 23455444444444442 2323 2 33434999999999999875211101
Q ss_pred cccccCHHHHHHHHHHHH----h--CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----Cc-EEEE---ecCCCCH
Q psy14485 94 ATKILSIESVITAAQKAK----S--DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GL-ETCL---TLGMLNE 158 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~----~--~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~-~i~~---~~g~l~~ 158 (348)
.....-.+.++++++... . .++..|+|+|| +|+..+.+.+.++++.+++. ++ ++++ +|+.+++
T Consensus 192 ~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGG--TPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~ 269 (488)
T PRK08207 192 GLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGG--TPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITE 269 (488)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCC--CccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCH
Confidence 100012344455544432 1 24678999988 46667788899999888753 22 5554 5668999
Q ss_pred HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec-CCCHHHHHHHHHHHHhcC
Q psy14485 159 NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL-SESRDQRAELIFQLANLN 235 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl-get~e~~~~~l~~l~~l~ 235 (348)
+.++.|+++|++++++|+|| ++++++.+++.|+++++.++++.++++|+ .+++++|+|+ |||.+++.++++++.+++
T Consensus 270 e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 270 EKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999 79999999999999999999999999999 7999999999 999999999999999999
Q ss_pred CCCCeeecccccccCCCCCCC----CCCCCHHHHHHHHHHHHHHCC
Q psy14485 236 PYPESVPINNLVQIKGTPLYG----SSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~gT~l~~----~~~~~~~~~~~~~a~~R~~lp 277 (348)
|++++++.+.|.|||+++. ...++.++..+|+..++..+.
T Consensus 350 --pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~ 393 (488)
T PRK08207 350 --PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAK 393 (488)
T ss_pred --cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999974 245788889999999887654
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=238.49 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=188.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.|+| ++|+.+|.||+|...... ........+.++++++...+ ..++.|+|+|| +|+..+.+.+.++++
T Consensus 65 YiHI--PFC~~~C~yC~f~~~~~~--~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGG--TPs~L~~~~l~~ll~ 138 (449)
T PRK09058 65 YIHI--PFCRTHCTFCGFFQNAWN--PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGG--TPTALSAEDLARLIT 138 (449)
T ss_pred EEEe--CCcCCcCCCCCCcCcCCc--hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCC--ccccCCHHHHHHHHH
Confidence 3455 999999999998764211 11112345677777665443 24778999988 577778899999999
Q ss_pred HHHhc-----CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-CeeeE
Q psy14485 141 EVKKI-----GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICC 211 (348)
Q Consensus 141 ~i~~~-----~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-~~i~~ 211 (348)
.+++. ++++ .+++..+++|.++.|+++|++++++|+|| ++++++.++|.|+.+++.++++.++++| ..+++
T Consensus 139 ~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~ 218 (449)
T PRK09058 139 ALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVC 218 (449)
T ss_pred HHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEE
Confidence 99873 3344 45688999999999999999999999999 8999999999999999999999999999 57999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCC-CHHHHHHHHHHHHHHCCCCc-ee
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSIL-DPLEFIRTIAVARITMPTSR-IR 282 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~-~~~~~~~~~a~~R~~lp~~~-i~ 282 (348)
++|||+ |||.+++.++++++.+++ +++++++.|.|.|||+++. .+++ +.++..+|+..++..|.... .+
T Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~ 296 (449)
T PRK09058 219 DLIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQ 296 (449)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 999999 999999999999999999 9999999999999999875 2345 88999999999999887642 22
Q ss_pred --cc----cc----ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 283 --MS----AG----RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 --~s----~g----~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ ++ ++|.. ....++++++||.+.+.|.++
T Consensus 297 yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~ 338 (449)
T PRK09058 297 LSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSY 338 (449)
T ss_pred EeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCEEE
Confidence 11 22 23321 345677899999998765444
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=217.32 Aligned_cols=229 Identities=18% Similarity=0.267 Sum_probs=185.9
Q ss_pred HHHHHHhhcC-ChHHHHHHHHHHHHhhcC-CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHH
Q psy14485 31 LDEVINLFNL-PFNDLLFRAQKVHRKYFD-ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 108 (348)
Q Consensus 31 ~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~-g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 108 (348)
..++..|+.. ++..+.+.|+..+...++ ++.+++. .+ |++|+.+|+||+++.. . ++ .++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tfv---~i-s~gC~~~C~FCa~~~g--~---~~-~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATFL---IM-GSICTRRCAFCQVDKG--R---PM-PLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEEE---Ee-cccccCcCCCCCccCC--C---CC-CCCHHHHHHHHH
Confidence 6778888865 799999999998776553 5656554 44 9999999999999872 1 34 389999999999
Q ss_pred HHHhCCCCEEEEeccCCCC-CcccHHHHHHHHHHHHhc--CcEEEE-ecCCC--CHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 109 KAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCL-TLGML--NENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~-~~~~~~~~~~l~~~i~~~--~~~i~~-~~g~l--~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
.+...|+++|+|+|+..+. +..+.+++.++++.|++. ++.+.+ ++..+ ..+.++.|+++|.+.+.+++||++++
T Consensus 98 ~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~v 177 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRL 177 (290)
T ss_pred HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHH
Confidence 9999999999999874321 224467899999999985 344443 34444 57889999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcC--CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc--cCCCCCCCCC
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ--IKGTPLYGSS 258 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P--~~gT~l~~~~ 258 (348)
++.|+++++++++++.++.+++.| +.+++++|+|+|||.+|+.++++++++++ ++.+++++|.+ ....|...+-
T Consensus 178 l~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~~~~ 255 (290)
T PRK12928 178 QKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQRYW 255 (290)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCceeecc
Confidence 999999999999999999999999 99999999999999999999999999999 99999988765 3456666655
Q ss_pred CCCHHHHHHHHHH
Q psy14485 259 ILDPLEFIRTIAV 271 (348)
Q Consensus 259 ~~~~~~~~~~~a~ 271 (348)
.|...+.++.++.
T Consensus 256 ~~~~f~~~~~~~~ 268 (290)
T PRK12928 256 TPEEFEALGQIAR 268 (290)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=231.29 Aligned_cols=238 Identities=21% Similarity=0.297 Sum_probs=185.3
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 145 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-- 145 (348)
+++-++|+.+|.||+++...... ......++.++++++.... .+++.|+|+|| +|+..+.+.+..+++.++..
T Consensus 7 YiHiPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGG--tps~l~~~~l~~L~~~i~~~~~ 82 (374)
T PRK05799 7 YIHIPFCKQKCLYCDFPSYSGKE--DLMMEYIKALSKEIRNSTKNKKIKSIFIGGG--TPTYLSLEALEILKETIKKLNK 82 (374)
T ss_pred EEEeCCccCCCCCCCCCcccCCc--chHHHHHHHHHHHHHhhcCCCceeEEEECCC--cccCCCHHHHHHHHHHHHhCCC
Confidence 33449999999999998753221 1211236777777765432 35788999888 45555667777777777653
Q ss_pred --CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-C
Q psy14485 146 --GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-S 218 (348)
Q Consensus 146 --~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl-g 218 (348)
++++ .++++.++++.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.++++|+. +++++|+|+ |
T Consensus 83 ~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 83 KEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred CCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 2344 46788999999999999999999999999 799999999999999999999999999995 899999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCc-ee--cc----c
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSR-IR--MS----A 285 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~ 285 (348)
||.+++.++++++.+++ +++++++.+.|.||||++. ...++.++...++..++..|.... .+ ++ +
T Consensus 163 qt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~ 240 (374)
T PRK05799 163 QTLEDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKP 240 (374)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECC
Confidence 99999999999999998 9999999999999999864 245788889999999988876542 12 11 2
Q ss_pred c---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 286 G---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 286 g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
| +||+. ....+.|+++||.+.+.|.++
T Consensus 241 ~~~~~hn~~yw~~~~~~g~G~gA~s~~~~~~~ 272 (374)
T PRK05799 241 GKECRHNLVYWDLEEYIGCGAGAHSYVNGKRY 272 (374)
T ss_pred CcchhhHHHHhcCCCEEEEcCCccccCCCEEE
Confidence 2 23321 234577899999998765443
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=231.22 Aligned_cols=233 Identities=12% Similarity=0.146 Sum_probs=178.1
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy14485 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
.-|+|+.+|.||+|++..... ......++.++++++...+ .++..|+|+|| +|+..+.+.+.++++.+++.
T Consensus 6 HiPFC~~~C~yC~f~~~~~~~--~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGG--TPs~l~~~~l~~ll~~i~~~~ 81 (350)
T PRK08446 6 HIPFCESKCGYCAFNSYENKH--DLKKEYMQALCLDLKFELEQFTDEKIESVFIGGG--TPSTVSAKFYEPIFEIISPYL 81 (350)
T ss_pred EeCCccCcCCCCCCcCcCCCc--ccHHHHHHHHHHHHHHHHhhccCCceeEEEECCC--ccccCCHHHHHHHHHHHHHhc
Confidence 349999999999998752111 1111245666666654322 36888999988 46667888888888888762
Q ss_pred --CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec-C
Q psy14485 146 --GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL-S 218 (348)
Q Consensus 146 --~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl-g 218 (348)
+.+ +.++|+.++++.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.++++|+ .+++++|+|+ |
T Consensus 82 ~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 82 SKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 334 456788999999999999999999999999 79999999999999999999999999999 4899999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCc-ee--c---ccc---c
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS--ILDPLEFIRTIAVARITMPTSR-IR--M---SAG---R 287 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~--~~~~~~~~~~~a~~R~~lp~~~-i~--~---s~g---~ 287 (348)
||.+++.++++++.+++ |++++++.+.|.||||++... .++.+ +++..+...+.... .+ + +.| +
T Consensus 162 qt~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~~~~~~~~~---~~~~~~~~~l~~~Gy~~yeis~fa~~~~~~ 236 (350)
T PRK08446 162 DNKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEKNHKKKDDE---NLAKFFIEQLEELGFKQYEISNFGKNYQCK 236 (350)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHhhhcCCCHH---HHHHHHHHHHHHCCCcEEEeehhhCcchhh
Confidence 99999999999999999 999999999999999997632 23333 35556665554432 11 1 111 2
Q ss_pred cccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 288 KEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 288 ~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
||+. ....+.|+++||.+.+.+.++
T Consensus 237 hn~~yw~~~~~lg~G~gA~s~~~~~~~ 263 (350)
T PRK08446 237 HNLGYWQGKDYLGCGAGAVGFVANKRF 263 (350)
T ss_pred hHHHHhCCCCEEEEcCCcccccCCeEE
Confidence 4432 345678999999998765443
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=231.26 Aligned_cols=239 Identities=16% Similarity=0.211 Sum_probs=185.7
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCc--cccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNTEIT--ATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~--~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
+.-++|+.+|.||+|++....... .....-.+.+.++++...+ ..++.|+|+|| +|+..+.+.+.++++.
T Consensus 7 iHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGG--TPs~l~~~~l~~ll~~ 84 (375)
T PRK05628 7 VHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGG--TPSLLGAEGLARVLDA 84 (375)
T ss_pred EEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCC--ccccCCHHHHHHHHHH
Confidence 334999999999999764321100 0001125667777665443 23678999888 5666778889999988
Q ss_pred HHhc-----CcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEe
Q psy14485 142 VKKI-----GLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCG 212 (348)
Q Consensus 142 i~~~-----~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~ 212 (348)
+++. +++++ ++++.++++.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. ++.+
T Consensus 85 i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~d 164 (375)
T PRK05628 85 VRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLD 164 (375)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 8762 23444 5788999999999999999999999999 899999999999999999999999999997 9999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc---ee
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR---IR 282 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~---i~ 282 (348)
+|+|+ |||.+++.++++++.+++ |+++.++++.+.||||++.. +.++.++...++..++.++.... ..
T Consensus 165 li~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye 242 (375)
T PRK05628 165 LIYGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYE 242 (375)
T ss_pred EeccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeee
Confidence 99999 999999999999999999 99999999999999999752 35677778889998888775532 11
Q ss_pred cc----cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 283 MS----AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 ~s----~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +| +||+. ....+.++++||.+.+.|.++
T Consensus 243 ~s~fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~ 281 (375)
T PRK05628 243 VSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRW 281 (375)
T ss_pred eccccCCCcccccchhhcCCCCEEEEccCcccccCCEEE
Confidence 11 11 24432 345778999999998766443
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=228.99 Aligned_cols=235 Identities=15% Similarity=0.186 Sum_probs=183.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
-++|+.+|.||+|++..... ......++.++++++.+... +++.|+|+|| +|+..+.+.+.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGG--tpt~l~~~~l~~ll~~i~~~~~~ 83 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGG--TPTALSAEQLERLLTAIHRNLPL 83 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCC--CcccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999998742111 11123467777777655443 5777888877 45556778999999988873
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-C
Q psy14485 146 ----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-S 218 (348)
Q Consensus 146 ----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl-g 218 (348)
.+.+.++++.++.+.++.|+++|++++++|+|| ++++++.++++++.+++.++++.++++|+. ++.++|+|+ |
T Consensus 84 ~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg 163 (377)
T PRK08599 84 SGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG 163 (377)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC
Confidence 133456888999999999999999999999999 799999999999999999999999999996 789999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc-ee--cc----c
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR-IR--MS----A 285 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~ 285 (348)
||.+++.++++++.+++ +++++++++.|.|||+++.. +.++.+...+++..+...+.... .+ ++ +
T Consensus 164 qt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa~~ 241 (377)
T PRK08599 164 QTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFAKP 241 (377)
T ss_pred CCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeeeCC
Confidence 99999999999999999 99999999999999998742 34677788888888887775432 12 11 2
Q ss_pred cc---ccc--chhhHHHHHHhCcceeeeCCee
Q psy14485 286 GR---KEM--GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 286 g~---~~l--~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|. ||. .....+.++++||.+.+.+.++
T Consensus 242 ~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~ 273 (377)
T PRK08599 242 GFESRHNLTYWNNEEYYGFGAGASGYVNGVRY 273 (377)
T ss_pred ChHHHHHHHHhcCCcEEEEccCcccccCCEEE
Confidence 21 222 1345677899999998755443
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=224.84 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=182.5
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
++.-++|+.+|.||+|.+..... ..+|.....+||...+......++.+|+|+|| +|+..+.+.+.++++.+++.
T Consensus 10 YiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGG--tPs~l~~~~l~~ll~~l~~~ 87 (378)
T PRK05660 10 YIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGG--TPSLFSAEAIQRLLDGVRAR 87 (378)
T ss_pred EEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCC--ccccCCHHHHHHHHHHHHHh
Confidence 33349999999999998742111 11233223333332222222246889999988 56677889999999999872
Q ss_pred -----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeee
Q psy14485 146 -----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIG 216 (348)
Q Consensus 146 -----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~G 216 (348)
+.+ +.++|+.++.+.++.|+++|+++|++|+|| ++++++.+++.|+.++.+++++.++++|+. +++++|+|
T Consensus 88 ~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~G 167 (378)
T PRK05660 88 LPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHG 167 (378)
T ss_pred CCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 334 456789999999999999999999999999 799999999999999999999999999995 79999999
Q ss_pred c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCc-ee--cc----cc
Q psy14485 217 L-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPTSR-IR--MS----AG 286 (348)
Q Consensus 217 l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~g 286 (348)
+ |||.+++.++++.+.+++ |++++++++.|.|||+++.. ..++.++...++..+...|.... .+ ++ +|
T Consensus 168 lpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 245 (378)
T PRK05660 168 LPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPG 245 (378)
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCC
Confidence 9 999999999999999999 99999999999999999864 34677888999999988876542 11 11 22
Q ss_pred ---ccccc--hhhHHHHHHhCcceeee
Q psy14485 287 ---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 287 ---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
+||.. ....+.++++||.+.+.
T Consensus 246 ~~~~hn~~~w~~~~~lg~G~gA~s~~~ 272 (378)
T PRK05660 246 YQCQHNLNYWRFGDYLGIGCGAHGKLT 272 (378)
T ss_pred hhHHHHHHHhcCCCEEEEcCCcccccc
Confidence 23321 23457788999988763
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=228.06 Aligned_cols=232 Identities=10% Similarity=0.146 Sum_probs=183.3
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC-----CccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHH
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTE-----ITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
++.-|+|+.+|.||+|++..... ..+| .+.+.++++.... ..+++|+|+|| +|+..+.+.+.+++
T Consensus 23 YiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y----~~~l~~ei~~~~~~~~~~~i~siy~GGG--TPs~L~~~~L~~ll 96 (394)
T PRK08898 23 YVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAY----LDALRADLEQALPLVWGRQVHTVFIGGG--TPSLLSAAGLDRLL 96 (394)
T ss_pred EEEeCCccCcCCCCCCcccccCCCCccCHHHH----HHHHHHHHHHHHHhccCCceeEEEECCC--CcCCCCHHHHHHHH
Confidence 33459999999999998753221 1123 4666666654322 24778999988 57778889999999
Q ss_pred HHHHhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE
Q psy14485 140 CEVKKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 140 ~~i~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
+.+++. .+.+.++|+.++.+.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.+++.+..+++
T Consensus 97 ~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~ 176 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNL 176 (394)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 999863 234456789999999999999999999999999 899999999999999999999999998778999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCc-----ee-
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS--ILDPLEFIRTIAVARITMPTSR-----IR- 282 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~--~~~~~~~~~~~a~~R~~lp~~~-----i~- 282 (348)
++|+|+ |||.+++.++++.+.+++ |++|+++.|.|.||||++... .++.+...+++..+...|.... +.
T Consensus 177 dlI~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 254 (394)
T PRK08898 177 DLMYALPGQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSA 254 (394)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhcccc
Confidence 999999 999999999999999999 999999999999999998643 4677788889888888775432 11
Q ss_pred cc-cc---ccccc--hhhHHHHHHhCcceeee
Q psy14485 283 MS-AG---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 283 ~s-~g---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
.+ +| +||.. ....+.|+++||.+.+.
T Consensus 255 fa~~~~~~~hn~~~w~~~~~lg~G~gA~s~l~ 286 (394)
T PRK08898 255 YAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLS 286 (394)
T ss_pred ccCCCccchhHHHHhCCCCEEEECCCeeeeec
Confidence 11 22 23221 23456789999998864
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=209.44 Aligned_cols=230 Identities=20% Similarity=0.270 Sum_probs=182.2
Q ss_pred CHHHHHHhhcC-ChHHHHHHHHHHHH--hhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHH
Q psy14485 30 KLDEVINLFNL-PFNDLLFRAQKVHR--KYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITA 106 (348)
Q Consensus 30 s~~e~~~Ll~~-~~~~l~~~A~~~~~--~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 106 (348)
...|++.|+.. |+..|++.|+.+++ .+. |+.+++. .+ |++|+++|+||.++... . +.+++++|+++
T Consensus 20 ~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~-~~~~~fi---~i-s~GC~~~C~FC~i~~~r--~----~s~~~eeI~~e 88 (289)
T PRK05481 20 EYTEIKKLLRELGLHTVCEEASCPNIGECWS-RGTATFM---IL-GDICTRRCPFCDVATGR--P----LPLDPDEPERV 88 (289)
T ss_pred hHHHHHHHHHhCChHHHHHhhCCCcchhccC-CCeEEEE---Ee-cccccCCCCCceeCCCC--C----CCCCHHHHHHH
Confidence 47889999874 89999999999977 444 6666554 46 99999999999998742 1 23789999999
Q ss_pred HHHHHhCCCCEEEEeccCCCC-CcccHHHHHHHHHHHHhc--CcEEEEe-cC-CCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 107 AQKAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCLT-LG-MLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~-~~~~~~~~~~l~~~i~~~--~~~i~~~-~g-~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
++.+.+.|+++|+|+||..+. +....+++.++++.|++. ++.+.+- +. ....+.+..|+++|.+.+.+++|++++
T Consensus 89 a~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~ 168 (289)
T PRK05481 89 AEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPR 168 (289)
T ss_pred HHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHH
Confidence 999999999999999984321 122457899999999873 3444332 22 234589999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCCCCC
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSS 258 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~~~~ 258 (348)
+++.|+++++++++++.++.++++ |+.+++++|+|+|||.+|+.+++.++++++ ++.+.+++|.| |.- .+.-..
T Consensus 169 vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~~v~~ 245 (289)
T PRK05481 169 LYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHLPVER 245 (289)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccCCCCC
Confidence 999999999999999999999999 999999999999999999999999999999 99999999998 332 221112
Q ss_pred CCCHHHHHHHHHHHH
Q psy14485 259 ILDPLEFIRTIAVAR 273 (348)
Q Consensus 259 ~~~~~~~~~~~a~~R 273 (348)
....++...+..++.
T Consensus 246 ~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 246 YVTPEEFDEYKEIAL 260 (289)
T ss_pred cCCHHHHHHHHHHHH
Confidence 244444444444444
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=223.10 Aligned_cols=251 Identities=14% Similarity=0.156 Sum_probs=191.5
Q ss_pred HHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC----CCCEEEEeccCC
Q psy14485 50 QKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWR 125 (348)
Q Consensus 50 ~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----G~~~i~l~gg~~ 125 (348)
.++....+ +..+.+ .|+| ++|+.+|.||++....... ........+.++++++...+. .+..++|+||
T Consensus 29 ~~~~~~~~-~~~~~l--YvHI--PFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGG-- 100 (430)
T PRK08208 29 SEVWEREY-EDALSL--YIHI--PFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGG-- 100 (430)
T ss_pred HHHhccCC-CCceEE--EEEe--CCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCC--
Confidence 44444444 454433 3444 9999999999988753211 111112356677776654422 3678899877
Q ss_pred CCCcccHHHHHHHHHHHHhc------CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHH
Q psy14485 126 ELKDRDLDNIENMICEVKKI------GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRL 196 (348)
Q Consensus 126 ~~~~~~~~~~~~l~~~i~~~------~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~ 196 (348)
+|+..+.+.+.++++.+++. ++++ .+++..++++.++.|+++|+++|++|+|| ++++++.++++++.++..
T Consensus 101 TPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~ 180 (430)
T PRK08208 101 TPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVH 180 (430)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHH
Confidence 46667788888888888752 2334 46788999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHcCCe-eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 197 NTLKNVRNVGIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 197 ~~i~~~~~~G~~-i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
++++.++++|+. +++++|+|+ |||.+++.++++++.+++ +++++++++.|.|||+++....++.++..+|+..++.
T Consensus 181 ~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~ 258 (430)
T PRK08208 181 QALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARD 258 (430)
T ss_pred HHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHH
Confidence 999999999996 689999999 999999999999999999 9999999999999999998777788999999999998
Q ss_pred HCCCCc-ee--cc----ccc---cccc---hhhHHHHHHhCcceeeeCC
Q psy14485 275 TMPTSR-IR--MS----AGR---KEMG---ETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 275 ~lp~~~-i~--~s----~g~---~~l~---~~~~~~~l~~GAn~~~~~~ 310 (348)
.|.... .+ ++ .+. ++.. ...+++|+++||.+.+.+.
T Consensus 259 ~L~~~Gy~~yei~~far~~~~~~~~~~~~~~~~~~lG~G~gA~s~~~~~ 307 (430)
T PRK08208 259 LLLEAGYTQTSMRMFRRNDAPDKGAPAYSCQTDGMLGLGCGARSYTGNL 307 (430)
T ss_pred HHHHcCCeEEeecceecCCcccCCCCccccCCCCEEEecCCeeecCCCC
Confidence 876542 11 11 111 1111 2356789999999987553
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=217.63 Aligned_cols=234 Identities=16% Similarity=0.265 Sum_probs=186.3
Q ss_pred ecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHhC-----CCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 71 KTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSD-----GATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~-----G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
.-++|...|.||+|++..... ...| .+-+.++++..... .+++|+|+|| +|+....+.+..++..+
T Consensus 40 HiPFC~~~C~YC~fn~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~v~ti~~GGG--TPslL~~~~l~~ll~~l 113 (416)
T COG0635 40 HIPFCVSKCPYCDFNSHVTKRGQPVDEY----LDALLEEIELVAALLGGQREVKTIYFGGG--TPSLLSPEQLERLLKAL 113 (416)
T ss_pred EcccccccCCCCCCeeeccCCCChHHHH----HHHHHHHHHHHHhhcCCCCeEEEEEECCC--ccccCCHHHHHHHHHHH
Confidence 349999999999999854322 1224 23444444433322 3778999988 57788889999999888
Q ss_pred Hhc------CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEe
Q psy14485 143 KKI------GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCG 212 (348)
Q Consensus 143 ~~~------~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~ 212 (348)
++. +.++ .++|+.++.+.++.|+++|++|+|+|+|| ++++++.++|.|+.++..++++.+++.|+ .++.+
T Consensus 114 ~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~D 193 (416)
T COG0635 114 RELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINID 193 (416)
T ss_pred HHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 753 1444 45899999999999999999999999999 89999999999999999999999999999 69999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCce---ec
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-----SILDPLEFIRTIAVARITMPTSRI---RM 283 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~-----~~~~~~~~~~~~a~~R~~lp~~~i---~~ 283 (348)
+|||+ +||.+++.++++.+.+++ |++++++.|.-.|+|++... ..|+.++.++++..+...+...+. .+
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yei 271 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEI 271 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEee
Confidence 99999 999999999999999999 99999999999999998753 257888889999998887765432 12
Q ss_pred c-----cc--ccccc--hhhHHHHHHhCcceeeeCCee
Q psy14485 284 S-----AG--RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 284 s-----~g--~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+ ++ +||+. ....++++++||.+.+.+.++
T Consensus 272 snfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~~~~ 309 (416)
T COG0635 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGGTRY 309 (416)
T ss_pred chhcCcchHHHhhhccccCCCeEEECCCceeeeccEEE
Confidence 1 11 34443 334778999999998766443
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=203.18 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=160.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc--CcE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~--~~~ 148 (348)
++.|+.+|.||+++... . + ..++++|+.+.++.+.+.|++.++++++.. ++++...+.+.+.++.|++. ++.
T Consensus 156 G~~CTr~C~FCaqstg~-~---p-~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~ 230 (398)
T PTZ00413 156 GDHCTRGCRFCSVKTSR-K---P-PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELL 230 (398)
T ss_pred CCCCCCCCCCCCCCCCC-C---C-CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCe
Confidence 89999999999998632 1 1 347999999999999999999887877743 34556789999999999984 688
Q ss_pred EEEecCCC--CHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHc---CCeeeEeEeeecCCCHH
Q psy14485 149 TCLTLGML--NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV---GINICCGGIIGLSESRD 222 (348)
Q Consensus 149 i~~~~g~l--~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~---G~~i~~~~i~Glget~e 222 (348)
+++..|.+ +.+.++.|++||++++++++||++++|..|++ .++|++.+++++.+++. |+.+++++|+|+|||.+
T Consensus 231 IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~e 310 (398)
T PTZ00413 231 LEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEE 310 (398)
T ss_pred EEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHH
Confidence 99999966 89999999999999999999999999999995 68999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeec-ccccccCC-CCCCCCCCCCHHHHHHHHHHH
Q psy14485 223 QRAELIFQLANLNPYPESVPI-NNLVQIKG-TPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~-~~l~P~~g-T~l~~~~~~~~~~~~~~~a~~ 272 (348)
|+++++..|++++ ++.++| +.|.|.+. -|...+ .+++++..+-..+
T Consensus 311 Evie~m~dLrelG--VDivtIGQYL~Ps~~h~~V~~y--v~P~~F~~~~~~a 358 (398)
T PTZ00413 311 EVRQTLRDLRTAG--VSAVTLGQYLQPTKTRLKVSRY--AHPKEFEMWEEEA 358 (398)
T ss_pred HHHHHHHHHHHcC--CcEEeeccccCCCcccCCceec--cCHHHHHHHHHHH
Confidence 9999999999999 999999 56677542 334333 3444443333333
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=201.08 Aligned_cols=197 Identities=17% Similarity=0.245 Sum_probs=164.2
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCC-CCcccHHHHHHHHHHHHhc-
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-~~~~~~~~~~~l~~~i~~~- 145 (348)
+.+ +++|+.+|+||+++... + +.+ .+++++.++++.+.+.|+++|+|+|+..+ ......+.+.++++.|++.
T Consensus 67 m~i-~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~ 140 (302)
T TIGR00510 67 MIL-GDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKL 140 (302)
T ss_pred Eec-CcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcC
Confidence 456 99999999999997532 1 111 46899999999999999999999987432 2223467899999999984
Q ss_pred -CcEEEEecCC--CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCC
Q psy14485 146 -GLETCLTLGM--LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSES 220 (348)
Q Consensus 146 -~~~i~~~~g~--l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget 220 (348)
++.+.+.... -+.+.++.|+++|.+.+.+++||++++|+.++++++++++++.++.+++. |+.+++++|+|+|||
T Consensus 141 p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGET 220 (302)
T TIGR00510 141 PNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGET 220 (302)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCC
Confidence 4455443221 26789999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccc-cc-cCCCCCCCCCCCCHHHHHHHHHHH
Q psy14485 221 RDQRAELIFQLANLNPYPESVPINNL-VQ-IKGTPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l-~P-~~gT~l~~~~~~~~~~~~~~~a~~ 272 (348)
.+|+.++++++++++ ++.+.+..| .| .+++|+..+..|+..+.++.++..
T Consensus 221 eee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 221 NEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred HHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 999999999999999 899988665 56 578999888888888888887765
|
The family shows strong sequence conservation. |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=204.22 Aligned_cols=222 Identities=18% Similarity=0.251 Sum_probs=171.8
Q ss_pred HHHHHHhhcCCCceEEEEEEEeecCCCCC--------CCCcCCCCCCCCCCCc--cccccCHHHHH-HHHHHHHhCCCCE
Q psy14485 49 AQKVHRKYFDANEIELAVLLSIKTGGCTE--------DCGYCPQSTHYNTEIT--ATKILSIESVI-TAAQKAKSDGATR 117 (348)
Q Consensus 49 A~~~~~~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~~~eei~-~~~~~~~~~G~~~ 117 (348)
..++ +++| |.+|+-. .++. +-.||+ .|.||+........ . ..+..++++-+ +..+.....+...
T Consensus 6 ~~~~-~~~~-g~~v~k~-~~~~-g~~cpnrdg~~~~~gC~FC~~~~~~~~~-~~~~~~~~~i~~qi~~~~~~~~~~~~~~ 80 (302)
T TIGR01212 6 GDYL-KERY-GQKVFKI-TLHG-GFSCPNRDGTKGRGGCTFCNDASRPIFA-DEYTQARIPIKEQIKKQMKKYKKDKKFI 80 (302)
T ss_pred HHHH-HHHc-CCceEEe-ecCC-CCCCCCCCCCCCCCCcccCCCCCCcccc-ccccccCCCHHHHHHHHHHHhhccCEEE
Confidence 3455 4568 8888754 4566 899998 69999976632111 0 01123433333 3333333333333
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHH---HhCC-CeeeccCCC-CHHHHhccCC
Q psy14485 118 FCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLK---KVGL-DYYNHNLDT-SPKLYGDIIS 188 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk---~aG~-~~i~~g~et-~~e~l~~i~~ 188 (348)
++|+|| +++..+.+.+.++++.+.+. ++.+.+++..++++.++.|+ ++|+ .++++|+|| ++++++.+++
T Consensus 81 iyf~gg--t~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 81 AYFQAY--TNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EEEECC--CcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 789888 46677899999999999874 33445578889997766665 5699 579999999 7999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCC
Q psy14485 189 TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILD 261 (348)
Q Consensus 189 ~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~ 261 (348)
+|+.+++.++++.++++|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++++.|.||||+++. .+++
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~ 236 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLS 236 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999 999999999999999999 99999999999999999763 6788
Q ss_pred HHHHHHHHHHHHHHCCCC
Q psy14485 262 PLEFIRTIAVARITMPTS 279 (348)
Q Consensus 262 ~~~~~~~~a~~R~~lp~~ 279 (348)
.+++++.+..+...+|..
T Consensus 237 ~~e~~~~~~~~l~~l~~~ 254 (302)
T TIGR01212 237 LEEYISLACDFLEHLPPE 254 (302)
T ss_pred HHHHHHHHHHHHHhCCcC
Confidence 899888888887777763
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=217.75 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=158.5
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
..+.. |+|||++|.||+++..... ..|+.++++.|+++++.+.+. |++.|+|.++.. ..+.+++.++++.++
T Consensus 198 ~~i~t-sRGCp~~C~FC~~~~~~~g--~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f---~~~~~~~~~l~~~l~ 271 (472)
T TIGR03471 198 ISLYT-GRGCPSKCTFCLWPQTVGG--HRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF---TDDKPRAEEIARKLG 271 (472)
T ss_pred EEEEe-cCCCCCCCCCCCCCccCCC--CceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC---CCCHHHHHHHHHHHh
Confidence 34566 9999999999997653211 356678999999999988764 789999977632 245678899999998
Q ss_pred hcCcEEEEec-CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCC
Q psy14485 144 KIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SES 220 (348)
Q Consensus 144 ~~~~~i~~~~-g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get 220 (348)
+.++.+.++. ..++++.++.|+++|++++.+|+|| ++++++.++++++.++..++++.++++|+.+..++|+|+ |||
T Consensus 272 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget 351 (472)
T TIGR03471 272 PLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGET 351 (472)
T ss_pred hcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCC
Confidence 8777665543 3589999999999999999999999 899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 221 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.+++.++++++.+++ ++.+.++.+.|.||||+++
T Consensus 352 ~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 352 RETIRKTIDFAKELN--PHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHHHHHHHhcC--CCceeeeecccCCCcHHHH
Confidence 999999999999998 8999999999999999875
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=211.12 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=164.9
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
...+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|........+ ..++.++++.
T Consensus 139 ~~~i~i-srGCp~~CsfC~~~~~~g----~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~ 213 (414)
T TIGR01579 139 RAFIKV-QDGCNFFCSYCIIPFARG----RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQ 213 (414)
T ss_pred EEEEEe-ccCcCCCCCCCceeeecC----CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHH
Confidence 345777 999999999999776432 45568999999999999999999999987532211111 2467888888
Q ss_pred HHhc-Cc-EEE---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH--cCCeeeE
Q psy14485 142 VKKI-GL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICC 211 (348)
Q Consensus 142 i~~~-~~-~i~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~ 211 (348)
+.+. ++ .+. +++..++++.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.+++ .|+.+++
T Consensus 214 l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~ 293 (414)
T TIGR01579 214 ILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGT 293 (414)
T ss_pred HhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeee
Confidence 8764 33 233 346678999999999987 7899999999 89999999999999999999999999 8999999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHH
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVAR 273 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R 273 (348)
++|+|+ |||.+++.++++++.+++ ++.+.+++|.|.||||++..+ ..+.....+-....+
T Consensus 294 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~ 355 (414)
T TIGR01579 294 DIIVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLK 355 (414)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHH
Confidence 999999 999999999999999998 899999999999999999865 466655544444433
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=212.46 Aligned_cols=237 Identities=12% Similarity=0.179 Sum_probs=181.2
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.-++|+.+|.||+++...... .......++.++++++.... .++..|+|+|| +|+..+.+++.++++.+++.
T Consensus 55 HiPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGG--tP~~l~~~~l~~ll~~i~~~ 131 (455)
T TIGR00538 55 HIPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGG--TPTYLSPEQISRLMKLIREN 131 (455)
T ss_pred EeCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCC--CcCCCCHHHHHHHHHHHHHh
Confidence 349999999999998743211 12222246777777765432 36888999988 45556788999999999863
Q ss_pred -----C--cEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeee
Q psy14485 146 -----G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIG 216 (348)
Q Consensus 146 -----~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~G 216 (348)
+ +.+.++++.++++.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. ++.++|+|
T Consensus 132 ~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G 211 (455)
T TIGR00538 132 FPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYG 211 (455)
T ss_pred CCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEee
Confidence 3 34456788999999999999999999999999 799999999999999999999999999995 89999999
Q ss_pred c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCC----CCCCCCHHHHHHHHHHHHHHCCCCc-ee--cc---
Q psy14485 217 L-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLY----GSSILDPLEFIRTIAVARITMPTSR-IR--MS--- 284 (348)
Q Consensus 217 l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~----~~~~~~~~~~~~~~a~~R~~lp~~~-i~--~s--- 284 (348)
+ |||.+++.++++++.+++ +++++++.+.+.|++ +.. ....+++++..+++..+...+.... .+ ++
T Consensus 212 lPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~fa 289 (455)
T TIGR00538 212 LPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDHFA 289 (455)
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEecccee
Confidence 9 999999999999999999 999999999776653 222 2345788899999988887665432 22 11
Q ss_pred -cc-------------ccccc----hhhHHHHHHhCcceeeeCCee
Q psy14485 285 -AG-------------RKEMG----ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 -~g-------------~~~l~----~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +++++ ...++.|+++||.+.+.|.++
T Consensus 290 ~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~lG~G~gA~s~~~~~~~ 335 (455)
T TIGR00538 290 KPDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGDCYA 335 (455)
T ss_pred CCChHHHHHHhhCcceeccccccCCCCCcEEEeCcceeeCCCCeeE
Confidence 11 11111 134678899999998765443
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=211.50 Aligned_cols=237 Identities=14% Similarity=0.206 Sum_probs=177.8
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
+.-++|+.+|.||++.+......... ..-.+.++++++...+ .++..|+|+|| +|+..+.+++.++++.+++
T Consensus 55 vHIPfC~~~C~yC~~~~~~~~~~~~~-~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGG--TPs~l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 55 LHVPFCRSLCWFCGCNTIITQRDAPV-EAYVAALIREIRLVAASLPQRRRVSQLHWGGG--TPTILNPDQFERLMAALRD 131 (453)
T ss_pred EEeCCccccCCCCCCcCcCccccchH-HHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCc--ccccCCHHHHHHHHHHHHH
Confidence 33489999999999886421110010 0124555666554332 25778999988 4666778999999999987
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEee
Q psy14485 145 I-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGII 215 (348)
Q Consensus 145 ~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~ 215 (348)
. +.+ +.++++.++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 132 ~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 132 AFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred hCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 3 233 456788999999999999999999999999 799999999999999999999999999995 8999999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCc-eec--c--
Q psy14485 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-----LYGSSILDPLEFIRTIAVARITMPTSR-IRM--S-- 284 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-----l~~~~~~~~~~~~~~~a~~R~~lp~~~-i~~--s-- 284 (348)
|+ |||.+++.++++++.+++ |+++.++.|...|++. ......|+.++..+++..+...|.... .+. +
T Consensus 212 GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~~~f 289 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGLDHF 289 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEeccce
Confidence 99 999999999999999999 9999999887544422 122346788888999988887775432 121 1
Q ss_pred --c-------------cccccc----hhhHHHHHHhCcceeeeCCe
Q psy14485 285 --A-------------GRKEMG----ETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 285 --~-------------g~~~l~----~~~~~~~l~~GAn~~~~~~~ 311 (348)
+ .+++++ ....+.++++||.+.+.+.+
T Consensus 290 ar~~~~~~~a~~~g~l~r~~~~Y~~~~~~~~lGlG~gA~s~~~~~~ 335 (453)
T PRK13347 290 ALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGY 335 (453)
T ss_pred eCCCchhhHHHhcCcccccccccCCCCCCcEEEECcCceeCCCCce
Confidence 1 122221 23567788899988875544
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=215.08 Aligned_cols=180 Identities=12% Similarity=0.169 Sum_probs=155.5
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHH-hCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAK-SDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~-~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.++. |+|||++|.||+.+..+ .+|+.++++.|+++++.+. +.|++.|.|.+.. + ..+.+++.++++.+.+.
T Consensus 196 ~i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~--f-~~~~~~~~~l~~~l~~~ 267 (497)
T TIGR02026 196 VPNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE--P-TINRKKFQEFCEEIIAR 267 (497)
T ss_pred eeec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc--c-ccCHHHHHHHHHHHHhc
Confidence 3556 99999999999987643 3577789999999999876 4799999998762 2 23567899999998865
Q ss_pred C---cEEEEe--cCCC--CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 146 G---LETCLT--LGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ~---~~i~~~--~g~l--~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+ +.+.++ +..+ +++.++.|+++|+.++++|+|| ++++++.++++++.++..++++.++++|+.+.+++|+|+
T Consensus 268 ~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 268 NPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred CCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 4 444433 3334 7899999999999999999999 899999999999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
|||.+++.++++++.+++ ++.+.++.+.|.||||+++
T Consensus 348 P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred CCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHHH
Confidence 999999999999999999 9999999999999999864
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=209.09 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=159.0
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccH--HHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL--DNIENMICEV 142 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~--~~~~~l~~~i 142 (348)
++.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|.....+..+. ..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 456777 99999999999988643 2 345579999999999999999999999876332222111 2467777777
Q ss_pred Hhc-C---cEEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy14485 143 KKI-G---LETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~-~---~~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+. + +.+. .++..++++.++.|+++ |+..+++|+|| ++++++.++++++.+++.++++.++++ |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 653 3 2332 24567899999999998 59999999999 899999999999999999999999998 9999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHH
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLE 264 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~ 264 (348)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+ ..+.++
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 99999 999999999999999999 899999999999999998865 344433
|
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=206.24 Aligned_cols=236 Identities=12% Similarity=0.094 Sum_probs=175.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC--CCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG--ATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
+++.-++|+.+|.||+|++..... .... .-.+.+.++++...+.| +..|+|+|| +|+.. .+.+.++++.+++.
T Consensus 55 LYvHIPFC~~~C~yC~f~~~~~~~-~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGG--TPs~l-~~~L~~ll~~i~~~ 129 (433)
T PRK08629 55 LYAHVPFCHTLCPYCSFHRFYFKE-DKAR-AYFISLRKEMEMVKELGYDFESMYVGGG--TTTIL-EDELAKTLELAKKL 129 (433)
T ss_pred EEEEeCCccCcCCCCCCcCcCCCc-chHH-HHHHHHHHHHHHHHhcCCceEEEEECCC--ccccC-HHHHHHHHHHHHHh
Confidence 344459999999999998742111 1111 12577777777665544 677999888 35544 57888888888763
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHH---HHHHHHHHHcCCeeeEeEeeec
Q psy14485 146 ----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR---LNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~---~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
.+.+.++|+.++++.++.|+++ ++++++|+|| ++++++.++|.|+.... ++.++.+++.+..+++++|+|+
T Consensus 130 f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~Gl 208 (433)
T PRK08629 130 FSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNF 208 (433)
T ss_pred CCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccC
Confidence 3445578999999999999999 9999999999 89999999999977555 4444444444446899999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCceecc------cc-
Q psy14485 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG---SSILDPLEFIRTIAVARITMPTSRIRMS------AG- 286 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~---~~~~~~~~~~~~~a~~R~~lp~~~i~~s------~g- 286 (348)
|||.+++.++++++.+++ |++++++++.+.|+|+... .+.++.+...+++..++..+.. ..+.+ .+
T Consensus 209 PgqT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~G-y~~~s~~~f~~~~~ 285 (433)
T PRK08629 209 PGQTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFGQ-YNQLSAWAFSKKND 285 (433)
T ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHCC-CeEecccccCCCCc
Confidence 999999999999999999 9999999999999998542 2356777888899999888873 22222 11
Q ss_pred cccc---chhhHHHHHHhCcceeeeCCee
Q psy14485 287 RKEM---GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 287 ~~~l---~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.++. ....++.|+++||.+.+.|.++
T Consensus 286 ~~~~~y~~~~~~ylGlG~gA~s~~~~~~~ 314 (433)
T PRK08629 286 EGFDEYVIDYDEYLGVGSGSFSFLDGTLY 314 (433)
T ss_pred hhhceeeccCCeEEEEcCCeeEecCCeEE
Confidence 1111 1345678999999998766544
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=210.25 Aligned_cols=235 Identities=11% Similarity=0.157 Sum_probs=178.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
-++|+.+|.||++....... .......++.++++++...+ .++..|+|+|| +|+..+.+.+.++++.+++.
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGG--tPs~l~~~~l~~ll~~l~~~~ 132 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGG--TPTFLSPEQLRRLMALLREHF 132 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCc--ccccCCHHHHHHHHHHHHHhC
Confidence 49999999999988643211 11111234566666654332 35788999888 46666789999999998863
Q ss_pred ----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec
Q psy14485 146 ----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL 217 (348)
Q Consensus 146 ----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl 217 (348)
+.+ +.+++..++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|+ .+++++|+|+
T Consensus 133 ~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl 212 (453)
T PRK09249 133 NFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGL 212 (453)
T ss_pred CCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 234 456788999999999999999999999999 79999999999999999999999999999 7999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-----CCCCCCHHHHHHHHHHHHHHCCCCc-eec--c----
Q psy14485 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-----GSSILDPLEFIRTIAVARITMPTSR-IRM--S---- 284 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-----~~~~~~~~~~~~~~a~~R~~lp~~~-i~~--s---- 284 (348)
|||.+++.++++++.+++ +++++++.+.+.|++... ....++.++..+++..+...+.... .+. +
T Consensus 213 Pgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s~far 290 (453)
T PRK09249 213 PKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMDHFAL 290 (453)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeC
Confidence 999999999999999999 999999999866554211 2235788888999988887765532 222 1
Q ss_pred cc------cccc---------c--hhhHHHHHHhCcceeeeCCe
Q psy14485 285 AG------RKEM---------G--ETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 285 ~g------~~~l---------~--~~~~~~~l~~GAn~~~~~~~ 311 (348)
++ .|+. . ....+.++++||.+.+.|.+
T Consensus 291 ~~~~~~~~~~n~~~~~~~~~y~~~~~~~~iglG~gA~s~~~~~~ 334 (453)
T PRK09249 291 PDDELAIAQREGTLHRNFQGYTTDGDCDLIGLGVSAISRIGDGY 334 (453)
T ss_pred CCchHHHHHHhCccccccceeccCCCCeEEEECcCcccCCCCee
Confidence 11 0110 0 02356789999999865543
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=209.88 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=158.3
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc----HHHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~----~~~~~~l~ 139 (348)
..+.+.+ +.|||+.|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999987643 2 34568999999999999999999999988643322211 12467888
Q ss_pred HHHHhcCc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy14485 140 CEVKKIGL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 140 ~~i~~~~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
+.+.+.++ .+. .++..++++.++.|+++| +.++++|+|| ++++++.++++++.++++++++.++++ |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 88876543 232 357789999999999999 7899999999 899999999999999999999999998 67888
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy14485 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCc
Confidence 9999999 999999999999999998 899999999999999998654
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=178.32 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=194.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~ 145 (348)
.|++++++|..+|.+|+-.-.+ .+ ...+.++++..+.++.+.|...+.++||-.+-...++..+.+.++++++ .
T Consensus 13 sISVTG~yC~lnC~HCg~~~L~--~M---i~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~ 87 (275)
T COG1856 13 SISVTGAYCSLNCPHCGRHYLE--HM---IKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERT 87 (275)
T ss_pred eEEEeccceEecChHHHHHHHH--Hh---cccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhh
Confidence 4566699999999999944321 11 1234578888888899999999999998544345678899999999998 5
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHH
Q psy14485 146 GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQ 223 (348)
Q Consensus 146 ~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~ 223 (348)
++.+.++.|.++++.++.|+++++|.+++.+=+++++.+++-+ .++.+++++.++.+++.|+++..++++|+ +-..+.
T Consensus 88 ~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~ 167 (275)
T COG1856 88 GLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHG 167 (275)
T ss_pred CeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccc
Confidence 9999999999999999999999999999988887777776644 67999999999999999999999999999 666666
Q ss_pred HHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc--ccchhhHHHHHHh
Q psy14485 224 RAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK--EMGETTQAFCFLA 301 (348)
Q Consensus 224 ~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~--~l~~~~~~~~l~~ 301 (348)
-.+.++.+.+.. +|.+.+..|+|.|||.|.+.++|+++|..+.+..||..+|+ .+.+...|+ ....+++..+..+
T Consensus 168 e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~ 244 (275)
T COG1856 168 EFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLA 244 (275)
T ss_pred hHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHc
Confidence 678889999888 99999999999999999999999999999999999999999 444332221 2235678889999
Q ss_pred Ccceeee
Q psy14485 302 GANSIFY 308 (348)
Q Consensus 302 GAn~~~~ 308 (348)
|+|.+..
T Consensus 245 gVd~It~ 251 (275)
T COG1856 245 GVDRITF 251 (275)
T ss_pred CCceeec
Confidence 9999943
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=193.04 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=155.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+-+ +++|+.+|.||+++... .+++ ..++++.+.++.+.+.|+++++|+++.. +.++...+++.++++.|++.
T Consensus 105 ~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~ 178 (349)
T PLN02428 105 IMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQL 178 (349)
T ss_pred EEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHh
Confidence 3455 99999999999998632 1233 5688888888888889999999988843 22456788999999999985
Q ss_pred --CcEEEE-ecCCC-CHHHHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHHc--CCeeeEeEeeecC
Q psy14485 146 --GLETCL-TLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNV--GINICCGGIIGLS 218 (348)
Q Consensus 146 --~~~i~~-~~g~l-~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glg 218 (348)
.+.+++ .++.+ +++.++.|+++|++.+.+++||++++++.|+ +.+++++++++++.+++. |+.+++++|+|+|
T Consensus 179 ~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG 258 (349)
T PLN02428 179 KPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG 258 (349)
T ss_pred CCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC
Confidence 345554 34443 8999999999999999999999999999999 688999999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccc-cccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNL-VQIKGTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l-~P~~gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
||.+|+.++++++++++ ++.+.+..| .|.+-+ +.-..-.+++++..+-.++.
T Consensus 259 ET~Edv~e~l~~Lrelg--vd~vtigqyL~Ps~~h-~~v~~~v~p~~f~~~~~~~~ 311 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAG--VDVVTFGQYLRPTKRH-LPVKEYVTPEKFEFWREYGE 311 (349)
T ss_pred CCHHHHHHHHHHHHHcC--CCEEeeccccCCCcce-eeeecccCHHHHHHHHHHHH
Confidence 99999999999999999 999999655 443211 11122345555544444444
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=206.50 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=160.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
+..+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|........+ ...+.++++.
T Consensus 140 ~~~i~~-srGC~~~CsfC~~~~~~g----~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 214 (429)
T TIGR00089 140 RAFLKI-QEGCDKFCTYCIVPYARG----RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRE 214 (429)
T ss_pred EEEEEH-HhCcCCCCCcCceecccC----CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHH
Confidence 345677 999999999999876432 45568999999999999999999999987532221111 1357888888
Q ss_pred HHhc-Cc-EEEE---ecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC--CeeeE
Q psy14485 142 VKKI-GL-ETCL---TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG--INICC 211 (348)
Q Consensus 142 i~~~-~~-~i~~---~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~ 211 (348)
+++. +. .+.+ ++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++| +.+.+
T Consensus 215 l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~ 294 (429)
T TIGR00089 215 LSKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITT 294 (429)
T ss_pred HhcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEe
Confidence 8764 33 2332 46678999999999995 9999999999 8999999999999999999999999998 88999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 295 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~ 348 (429)
T TIGR00089 295 DIIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVK 348 (429)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHH
Confidence 999999 999999999999999998 899999999999999999765 4554443
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=205.15 Aligned_cols=198 Identities=11% Similarity=0.167 Sum_probs=161.1
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-c----ccHHHHHHHHH
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-D----RDLDNIENMIC 140 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~----~~~~~~~~l~~ 140 (348)
..+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+ . .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~G----~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTRG----EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCcccC----CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 45667 999999999999876432 22247999999999999999999999987632221 1 11246788888
Q ss_pred HHHhc-Cc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy14485 141 EVKKI-GL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 141 ~i~~~-~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
.+.+. ++ .+. .++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 88763 33 332 246678999999999985 8999999999 899999999999999999999999997 78899
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHH
Q psy14485 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIA 270 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a 270 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+...+...
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 363 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQ 363 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHH
Confidence 9999999 999999999999999998 899999999999999999865 455554443333
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=204.03 Aligned_cols=193 Identities=15% Similarity=0.203 Sum_probs=159.3
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHHH
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEV 142 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~i 142 (348)
+.+.+ ++|||++|+||..+..+ + +++.+++++|+++++.+.+.|+++|.|.+....... ...+++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 45777 99999999999987643 2 355689999999999999999999988764221111 1235788888888
Q ss_pred HhcC-cEE-E---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy14485 143 KKIG-LET-C---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~~-~~i-~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+.+ +.+ . +++..++++.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 8754 332 1 346678999999999995 7899999999 899999999999999999999999998 5678899
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||+++..+ ..+.++.
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~ 344 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVK 344 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHH
Confidence 99999 999999999999999998 899999999999999998764 3554443
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=203.95 Aligned_cols=193 Identities=11% Similarity=0.160 Sum_probs=158.7
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+......+.++++.+.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~ 229 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYTR--G--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD 229 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhc
Confidence 456777 99999999999987542 2 345689999999999999999999999887443333333457777777754
Q ss_pred c-C---cEEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEe
Q psy14485 145 I-G---LETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGI 214 (348)
Q Consensus 145 ~-~---~~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i 214 (348)
. + +.+. .++..++++.++.|+++| +..+.+++|| ++++++.++++++.+++.++++.++++ |+.+.+++|
T Consensus 230 ~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~I 309 (449)
T PRK14332 230 ETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDII 309 (449)
T ss_pred CCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3 2 2222 246678999999999998 8999999999 899999999999999999999999997 678889999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-CCC-CCCHHH
Q psy14485 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSS-ILDPLE 264 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-~~~-~~~~~~ 264 (348)
+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||.+ ..+ .++.++
T Consensus 310 vGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 999 999999999999999999 999999999999999997 443 344443
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=204.45 Aligned_cols=193 Identities=11% Similarity=0.121 Sum_probs=157.2
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc--------cHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR--------DLDNIE 136 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~--------~~~~~~ 136 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.... ....+.
T Consensus 169 ~a~i~i-srGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~ 243 (467)
T PRK14329 169 SAFVSI-MRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFA 243 (467)
T ss_pred EEEEEe-ccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHH
Confidence 346777 99999999999987643 2 3456899999999999999999999888742111111 123577
Q ss_pred HHHHHHHhc--CcEEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--C
Q psy14485 137 NMICEVKKI--GLETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--G 206 (348)
Q Consensus 137 ~l~~~i~~~--~~~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G 206 (348)
++++.+.+. +..+. .++..++++.++.|+++ |+.++++|+|| ++++++.++++++.++..++++.++++ |
T Consensus 244 ~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~ 323 (467)
T PRK14329 244 QLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPD 323 (467)
T ss_pred HHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 888877653 33333 34677899999999997 89999999999 899999999999999999999999997 5
Q ss_pred CeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CC-CCCHHH
Q psy14485 207 INICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SS-ILDPLE 264 (348)
Q Consensus 207 ~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~-~~~~~~ 264 (348)
+.+++++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. .+ ..+.+.
T Consensus 324 ~~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 324 CGISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred CEEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHHH
Confidence 77899999999 999999999999999998 8999999999999999985 43 344433
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=203.49 Aligned_cols=191 Identities=10% Similarity=0.158 Sum_probs=158.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc--cHHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR--DLDNIENMICEV 142 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~--~~~~~~~l~~~i 142 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFTR--G--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCccccc--C--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 356778 99999999999987542 2 3556899999999999999999999998774322111 113467777777
Q ss_pred Hhc--CcEEEE---ecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy14485 143 KKI--GLETCL---TLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~--~~~i~~---~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+. +..+.+ ++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.++..++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 652 333332 4667899999999997 79999999999 899999999999999999999999998 9999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CC-CCCH
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SS-ILDP 262 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~-~~~~ 262 (348)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. .+ ..+.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 99999 999999999999999999 8999999999999999985 43 3453
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=202.70 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=158.6
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc------HHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD------LDNIEN 137 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~------~~~~~~ 137 (348)
.++.+.+ ++|||++|+||..+...+. .+.+++++|+++++.+.+.|+++|.|.|.....+..+ ...+.+
T Consensus 127 ~~a~i~i-srGC~~~CsFC~ip~~rG~----~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~ 201 (420)
T PRK14339 127 YKSLVNI-SIGCDKKCTYCIVPHTRGK----EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSD 201 (420)
T ss_pred eEEEEEe-cCCCCCCCCcCCcccccCC----CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHH
Confidence 3567888 9999999999998865322 2236999999999999999999999988633221111 124778
Q ss_pred HHHHHHhc-CcE-EE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CC
Q psy14485 138 MICEVKKI-GLE-TC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GI 207 (348)
Q Consensus 138 l~~~i~~~-~~~-i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~ 207 (348)
+++.+.+. ++. +. +++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.++..++++.++++ |+
T Consensus 202 Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i 281 (420)
T PRK14339 202 LLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEV 281 (420)
T ss_pred HHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCC
Confidence 88777652 432 22 34557889999999998 68999999999 899999999999999999999999997 78
Q ss_pred eeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 208 NICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 208 ~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 282 ~i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k 339 (420)
T PRK14339 282 SISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVA 339 (420)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHH
Confidence 8999999999 999999999999999998 888999999999999988764 4554433
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=203.20 Aligned_cols=194 Identities=10% Similarity=0.155 Sum_probs=158.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-c----HHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR-D----LDNIENMI 139 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-~----~~~~~~l~ 139 (348)
++.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+.. + ...+.+++
T Consensus 153 ~~~i~I-~rGC~~~CsfC~~p~~rG----~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll 227 (455)
T PRK14335 153 QSFIPI-MNGCNNFCSYCIVPYVRG----REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLL 227 (455)
T ss_pred eEEEEh-hcCCCCCCCCCCcccCCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHH
Confidence 345677 899999999999876432 2335799999999999999999999998863322110 1 12467777
Q ss_pred HHHHh-----cCcEE----EEecCCCCHHHHHHHHH--hCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--
Q psy14485 140 CEVKK-----IGLET----CLTLGMLNENQAYRLKK--VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV-- 205 (348)
Q Consensus 140 ~~i~~-----~~~~i----~~~~g~l~~e~l~~Lk~--aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~-- 205 (348)
+.+.+ .++.+ .+++..++++.++.|++ +|+..+.+++|| ++++++.++++++.+++.++++.+++.
T Consensus 228 ~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~p 307 (455)
T PRK14335 228 RHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIP 307 (455)
T ss_pred HHHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 77631 23332 24677889999999998 489999999999 899999999999999999999999998
Q ss_pred CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 206 GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 206 G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
|+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+ ..+.+..
T Consensus 308 gi~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k 367 (455)
T PRK14335 308 NVALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVK 367 (455)
T ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHH
Confidence 999999999999 999999999999999999 899999999999999999865 4555443
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=202.81 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=156.5
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cc----cHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-DR----DLDNIENMI 139 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~~----~~~~~~~l~ 139 (348)
.+.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|+|+|...+.+ .. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~G----~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTRG----DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeecC----CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 456777 999999999999875432 23457999999999999999999999987532222 11 123577788
Q ss_pred HHHHh-cCcE-EE---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy14485 140 CEVKK-IGLE-TC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~-~~~~-i~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+ .++. +. +++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++ |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 88765 2432 22 356788999999999999 9999999999 899999999999999999999999997 7888
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy14485 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~ 348 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMP 348 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCC
Confidence 99999999 999999999999999998 899999999999999999865
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=203.25 Aligned_cols=195 Identities=14% Similarity=0.180 Sum_probs=158.3
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
.+.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.++++.
T Consensus 148 ~~~i~i-~rGC~~~CsfC~~p~~~g----~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 222 (439)
T PRK14328 148 KAFVTI-MYGCNNFCTYCIVPYVRG----RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRR 222 (439)
T ss_pred EEEEEH-HhCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHH
Confidence 346777 999999999999886432 23457999999999999999999999988643222111 1246677777
Q ss_pred HHhc-C---cEE-EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy14485 142 VKKI-G---LET-CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~---~~i-~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. + +.+ ..++..++++.++.|+++| +.++++|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 223 l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 302 (439)
T PRK14328 223 VNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITT 302 (439)
T ss_pred HHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7652 3 222 2357788999999999996 8999999999 899999999999999999999999997 678899
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHH
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFI 266 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~ 266 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+...
T Consensus 303 d~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 303 DIIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 999999 999999999999999998 899999999999999999763 44544333
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=199.86 Aligned_cols=193 Identities=11% Similarity=0.157 Sum_probs=159.2
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMIC 140 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~ 140 (348)
..+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|+|...+.+..+ ...+.++++
T Consensus 124 ~~a~i~i-~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~ 198 (418)
T PRK14336 124 VSANVTI-MQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLS 198 (418)
T ss_pred eEEEEEe-ccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHH
Confidence 3456788 99999999999987542 2 34568999999999999999999999988743322221 245788888
Q ss_pred HHHhc-C-cEEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy14485 141 EVKKI-G-LETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 141 ~i~~~-~-~~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
.+.+. + ..+. .++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.+++.++++.++++ |+.+.
T Consensus 199 ~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~ 278 (418)
T PRK14336 199 ALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQ 278 (418)
T ss_pred HHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 88763 2 2333 24667889999999995 59999999999 899999999999999999999999998 99999
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-C-CCCCHH
Q psy14485 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-S-SILDPL 263 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~-~~~~~~ 263 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++. . ...+.+
T Consensus 279 ~d~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~ 332 (418)
T PRK14336 279 TDLIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVI 332 (418)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHH
Confidence 9999999 999999999999999998 8999999999999999984 4 334443
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=203.25 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=156.0
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~ 141 (348)
.+.+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|...+.+. .+...+.++++.
T Consensus 158 ~a~v~i-srGCp~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~ 232 (502)
T PRK14326 158 AAWVSI-SVGCNNTCTFCIVPSLRG----KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRA 232 (502)
T ss_pred eEEEEE-ccCCCCCCccCceeccCC----CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHH
Confidence 356778 999999999999887542 234579999999999999999999999876332211 233467777777
Q ss_pred HHhc-Cc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy14485 142 VKKI-GL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+... ++ .+. .++..+++|.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.+++. |+.+++
T Consensus 233 l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~ 312 (502)
T PRK14326 233 CGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITT 312 (502)
T ss_pred HHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 6643 32 332 346678999999999997 8999999999 899999999999999999999999996 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+
T Consensus 313 ~~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 313 DIIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 999999 999999999999999998 888999999999999998764
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=200.88 Aligned_cols=187 Identities=13% Similarity=0.202 Sum_probs=157.5
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---cHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~~~l~~~ 141 (348)
...+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ..+.+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 445778 89999999999987642 2 3345799999999999999999999998853222111 23568888888
Q ss_pred HHhc-Cc---EE-EEecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy14485 142 VKKI-GL---ET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~---~i-~~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. ++ .+ +.++..++++.++.|+++ |+.++++|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 8873 43 33 236778999999999995 58999999999 899999999999999999999999998 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 999999 999999999999999998 899999999999999998753
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=201.60 Aligned_cols=185 Identities=15% Similarity=0.212 Sum_probs=152.9
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---cHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~~~l~~~ 141 (348)
++.+.+ ++|||++|.||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ....+.++++.
T Consensus 141 ~~~v~i-~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~ 215 (434)
T PRK14330 141 HAWVTI-IYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEE 215 (434)
T ss_pred EEEEEc-ccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHH
Confidence 345777 89999999999987543 2 3456899999999999999999999887753222111 12356677776
Q ss_pred HHhc-CcE-E---EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy14485 142 VKKI-GLE-T---CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~~-i---~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. ++. + ..++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.+++. |+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 295 (434)
T PRK14330 216 ASKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISS 295 (434)
T ss_pred HHhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 6542 332 1 1245678999999999998 7899999999 899999999999999999999999996 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++
T Consensus 296 d~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 296 DIIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 999999 999999999999999999 9999999999999999987
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=200.15 Aligned_cols=195 Identities=14% Similarity=0.186 Sum_probs=155.0
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC---cccHHHHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK---DRDLDNIENMIC 140 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~---~~~~~~~~~l~~ 140 (348)
..+.+.+ ++|||++|+||.++...+ +.+.+++++|+++++.+.+.|+++|.|+|...... ......+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~g----~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTRG----PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhcC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 999999999999886422 22247899999999999999999998876321100 001124556666
Q ss_pred HHHhcCc---EEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC--eeeE
Q psy14485 141 EVKKIGL---ETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI--NICC 211 (348)
Q Consensus 141 ~i~~~~~---~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~--~i~~ 211 (348)
.+.+.++ .+. .++..++++.++.|+++ |+.++++|+|| ++++++.++++++.+++.++++.++++|. .+++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 6655443 332 25678899999999995 59999999999 89999999999999999999999999975 4789
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC-CCCCHHHH
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-SILDPLEF 265 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~-~~~~~~~~ 265 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++.. ...++++.
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 999999 999999999999999999 99999999999999999764 34555443
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=198.72 Aligned_cols=193 Identities=14% Similarity=0.242 Sum_probs=153.1
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc-HHHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-LDNIENMICEVK 143 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~-~~~~~~l~~~i~ 143 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|.+...+..+ ...+.++++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~~--G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHAR--G--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 457788 99999999999987542 2 35568999999999999999999999987532221111 124566666665
Q ss_pred hc--CcEEEE---ecC---CCCHHHHHHHHHhC-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy14485 144 KI--GLETCL---TLG---MLNENQAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 144 ~~--~~~i~~---~~g---~l~~e~l~~Lk~aG-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+. ...+.+ ++. .++++.++.++..| +..+.+|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 43 222322 232 34577777777655 5889999999 899999999999999999999999998 889999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHH
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 264 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~ 264 (348)
++|+|+ |||.+++.++++++.+++ ++.+.+++|.|.||||++..+..+.+.
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 999999 999999999999999998 899999999999999999876655443
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=198.58 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=159.1
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc----HHHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~----~~~~~~l~ 139 (348)
..+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.+++
T Consensus 148 ~~a~v~i-~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll 222 (446)
T PRK14337 148 ASAFVNI-MQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLL 222 (446)
T ss_pred cEEEEEe-ccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHH
Confidence 3456788 99999999999987532 2 34568999999999999999999999987532211111 13577777
Q ss_pred HHHHhc-Cc---EEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy14485 140 CEVKKI-GL---ETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~~-~~---~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+. ++ .+. .++..++++.++.|++. |+.++.+|+|| ++++++.++++++.+++.++++.+++. |+.+
T Consensus 223 ~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i 302 (446)
T PRK14337 223 HKVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIAL 302 (446)
T ss_pred HHHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 777653 32 332 35778899999999984 68999999999 899999999999999999999999997 6889
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
++++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||.+..+ ..+.+..
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk 358 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVK 358 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHH
Confidence 99999999 999999999999999998 899999999999999998864 3555433
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=200.64 Aligned_cols=194 Identities=11% Similarity=0.192 Sum_probs=156.8
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC----------cccHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK----------DRDLDN 134 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~----------~~~~~~ 134 (348)
.+.+.+ +.|||++|+||.++...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+ ......
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~rG----~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVRG----KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceecccC----CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 446677 999999999999886432 22347899999999999889999998876321111 011236
Q ss_pred HHHHHHHHHhc-Cc-EEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc-
Q psy14485 135 IENMICEVKKI-GL-ETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV- 205 (348)
Q Consensus 135 ~~~l~~~i~~~-~~-~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~- 205 (348)
+.++++.+.+. ++ .+. .++..++++.++.|+++ |+.++.+|+|| ++++++.++++++.+++.++++.++++
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 78888877763 33 232 34667889999999986 58999999999 899999999999999999999999998
Q ss_pred -CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy14485 206 -GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 206 -G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHH
Confidence 778999999999 999999999999999998 899999999999999998753 3444433
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=195.31 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=157.5
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc-------------H
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-------------L 132 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~-------------~ 132 (348)
+.+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|.+.+.+..+ .
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~G----~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMRG----DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCcccccC----CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 45677 999999999999876532 34568999999999999999999998875422111101 3
Q ss_pred HHHHHHHHHHHhcCcEEEE---ecCCCCHHHHHHHHHhCCC--eeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc-
Q psy14485 133 DNIENMICEVKKIGLETCL---TLGMLNENQAYRLKKVGLD--YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV- 205 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~---~~g~l~~e~l~~Lk~aG~~--~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~- 205 (348)
.++.++++.+.+.++.+.+ .+..++++.++.|++ |.. .+.+++|| ++++++.+++++++++.++.++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999887663332 344567899999999 543 78889999 799999999999999999999999996
Q ss_pred -CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHH
Q psy14485 206 -GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTI 269 (348)
Q Consensus 206 -G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~ 269 (348)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||....+ ..++++..+.+
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 788889999999 999999999999999998 899999999999999986443 45655544433
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=177.34 Aligned_cols=183 Identities=22% Similarity=0.366 Sum_probs=152.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-----CCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-----ATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.+.+ |++|+.+|.||..+... . . ....+++++.++++.+.+.| +..++++||. +...+.+.+.++++.
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~--~~~~~~~~~~~~~~~ 76 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGT--PTLLSPEQLEELLEA 76 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCC--CCCCCHHHHHHHHHH
Confidence 4566 99999999999988753 1 1 33578999999998886544 4667888873 333333457777777
Q ss_pred HHhc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-CeeeEe
Q psy14485 142 VKKI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCG 212 (348)
Q Consensus 142 i~~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-~~i~~~ 212 (348)
+++. ... +.++.+.++++.++.|+++|++++.+++++ ++++++.++++.++++++++++.++++| +.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 77 IREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred HHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEe
Confidence 7764 233 345567899999999999999999999999 7999999999999999999999999999 899999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
+++|+ +++.+++.+.++++.+++ ++.+.++++.|.||||++..+
T Consensus 157 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 157 LIVGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 99999 799999999999999998 899999999999999998754
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=189.84 Aligned_cols=213 Identities=18% Similarity=0.277 Sum_probs=170.3
Q ss_pred ceEEEEEEEeecCCCC-CCCCcCCCCC-------CCCCC------CccccccCHHHHHHHHHHHHhCC--CCEE--EEec
Q psy14485 61 EIELAVLLSIKTGGCT-EDCGYCPQST-------HYNTE------ITATKILSIESVITAAQKAKSDG--ATRF--CMGA 122 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~-~~C~fC~~~~-------~~~~~------~~~~~~~~~eei~~~~~~~~~~G--~~~i--~l~g 122 (348)
.|.+.+++.- --.|| .+|.||.-.- .|... ..+++.-+..++...++++...| ++.| .|.|
T Consensus 65 gv~~v~vm~~-p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G 143 (522)
T TIGR01211 65 GVAVVAVMTS-PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG 143 (522)
T ss_pred CeEEEEEecC-CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC
Confidence 3555555443 56799 4799998521 12111 11344467789999999988876 4333 5666
Q ss_pred cCCCCCcccHHHHHHHHHHHHhc-----------------------------CcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 123 AWRELKDRDLDNIENMICEVKKI-----------------------------GLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 123 g~~~~~~~~~~~~~~l~~~i~~~-----------------------------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
| +++..+.++...+++.+.+. ++.+.++|..++++.++.|+++|+++|+
T Consensus 144 G--Tft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 144 G--TFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVE 221 (522)
T ss_pred C--CcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 6 34456777777766655431 2334467889999999999999999999
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHh---cCCCCCeeecccccc
Q psy14485 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN---LNPYPESVPINNLVQ 248 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~---l~~~~~~i~~~~l~P 248 (348)
+|+|| ++++++.++|+|+.++..++++.++++|+.++.++|+|+ |+|.++..++++.+.+ ++ |+.+.++++.+
T Consensus 222 lGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V 299 (522)
T TIGR01211 222 LGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLV 299 (522)
T ss_pred EECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEeccee
Confidence 99999 899999999999999999999999999999999999999 9999999999999874 87 99999999999
Q ss_pred cCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy14485 249 IKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 249 ~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
.+||+|++ ..+++.++.+++++.+...+|.
T Consensus 300 ~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 300 TRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred eCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 99999974 5678999999999999999985
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=180.34 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=158.1
Q ss_pred cCCCceEEEEEEEeecCCCCC----CCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCC------EEEEeccCC
Q psy14485 57 FDANEIELAVLLSIKTGGCTE----DCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GAT------RFCMGAAWR 125 (348)
Q Consensus 57 ~~g~~v~~~~~i~i~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~------~i~l~gg~~ 125 (348)
+.|.......+|.. |+|||+ +|.||++.... ++..+++.+.++++.+.+. +.+ .++.+|+..
T Consensus 8 ~~~~~~~~~~~i~~-srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIILR-TRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEEe-CCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 33443444445566 999999 59999865421 2235889999998877643 322 234444444
Q ss_pred CCCcccHHHHHHHHHHHHhcC----cEEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHh-ccCCCCCHHHHHHH
Q psy14485 126 ELKDRDLDNIENMICEVKKIG----LETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYG-DIISTRDYENRLNT 198 (348)
Q Consensus 126 ~~~~~~~~~~~~l~~~i~~~~----~~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~-~i~~~~~~~~~~~~ 198 (348)
++...+.+.+.++++.+++.+ +.+.+++..+++|.++.|+++|++ +|++|+|| ++++++ .++++++.++..++
T Consensus 81 D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~a 160 (313)
T TIGR01210 81 DDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRA 160 (313)
T ss_pred CcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHH
Confidence 555566788889998888753 345567889999999999999998 89999999 899995 89999999999999
Q ss_pred HHHHHHcCCeeeEeEeeec-C----CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHH
Q psy14485 199 LKNVRNVGINICCGGIIGL-S----ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIR 267 (348)
Q Consensus 199 i~~~~~~G~~i~~~~i~Gl-g----et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~ 267 (348)
++.++++|+.+..++|+|+ + |+.+++.++++.+..++ ++++++++.|.|||+++. ..++..+..+.
T Consensus 161 i~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~---~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e 237 (313)
T TIGR01210 161 AELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT---DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAE 237 (313)
T ss_pred HHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC---CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999999999999998 6 45567777888888774 799999999999998753 34565556666
Q ss_pred HHHHHHH
Q psy14485 268 TIAVARI 274 (348)
Q Consensus 268 ~~a~~R~ 274 (348)
++..++.
T Consensus 238 ~l~e~~~ 244 (313)
T TIGR01210 238 VLKEAKK 244 (313)
T ss_pred HHHHHHh
Confidence 6555553
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=183.40 Aligned_cols=187 Identities=14% Similarity=0.250 Sum_probs=156.6
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccH----HHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL----DNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~----~~~~~l~ 139 (348)
..+.+.| +.||++.|+||-.+.. ++ +.+.+++++|+++++.+.+.|+++|.|.|-..+.+..+. ..+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG--~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RG--KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CC--CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 4557788 9999999999998864 22 223478999999999999999999999987554444443 4588888
Q ss_pred HHHHhc-Cc-EEE---EecCCCCHHHHHHHHHh-C-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy14485 140 CEVKKI-GL-ETC---LTLGMLNENQAYRLKKV-G-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~~-~~-~i~---~~~g~l~~e~l~~Lk~a-G-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+. |. .+. .+|-.++++.++.+++. - +..+.+.+|| ++++|+.|+|+++.++.++.++.+++. ++.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 888773 32 222 35778899999999985 3 5667889999 899999999999999999999999974 5789
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy14485 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
++++|+|+ |||.||+.++++++++.+ ++.+.++.|.|.||||-+..
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccC
Confidence 99999999 999999999999999999 99999999999999998854
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=160.85 Aligned_cols=220 Identities=20% Similarity=0.254 Sum_probs=172.4
Q ss_pred HHHHHhhcCCCceEEEEEEEeecCCCCC--------CCCcCCCCCCCCCCCccccccCH-HHHHHHHHHHHh-CC-CCE-
Q psy14485 50 QKVHRKYFDANEIELAVLLSIKTGGCTE--------DCGYCPQSTHYNTEITATKILSI-ESVITAAQKAKS-DG-ATR- 117 (348)
Q Consensus 50 ~~~~~~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~~~~~~~~-eei~~~~~~~~~-~G-~~~- 117 (348)
..+ ++.| |.+|+-. .+.. +-.||+ .|.||+..........+ ..+. +++.++++.+.+ .+ .+.
T Consensus 13 ~~l-r~~f-g~Kv~Kv-~ld~-GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~--~~~i~~Q~~~q~~~~~kK~~~~kyi 86 (312)
T COG1242 13 DYL-REKF-GEKVFKV-TLDG-GFSCPNRDGTIGRGGCTFCSVAGSGDFAGQP--KISIAEQFKEQAERMHKKWKRGKYI 86 (312)
T ss_pred HHH-HHHh-CCeeEEE-eccC-CCCCCCCCCcccCCceeeecCCCCCccccCc--ccCHHHHHHHHHHHHHHhhcCCcEE
Confidence 444 5568 8888764 4566 888998 49999876643222112 2344 455555554443 22 233
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHHHhCC---CeeeccCCC-CHHHHhccCCC
Q psy14485 118 FCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLKKVGL---DYYNHNLDT-SPKLYGDIIST 189 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk~aG~---~~i~~g~et-~~e~l~~i~~~ 189 (348)
++|+.. +.+..+.+.+.++.+..-.. |+.+.+.|..++++.++.|.+..= -++.+|+|| .+++++.|+|+
T Consensus 87 aYFQ~~--TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRg 164 (312)
T COG1242 87 AYFQAY--TNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRG 164 (312)
T ss_pred EEEecc--ccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcc
Confidence 588876 33567889999999766542 667777889999999998887732 346679999 69999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCH
Q psy14485 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDP 262 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~ 262 (348)
|+++.+.++++.+++.|+++|+++|+|| ||+.++.+++++.+..++ ++.|.+++++..+||||.. ....|.
T Consensus 165 Hd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~ 242 (312)
T COG1242 165 HDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSL 242 (312)
T ss_pred cchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccH
Confidence 9999999999999999999999999999 999999999999999999 9999999999999999964 457899
Q ss_pred HHHHHHHHHHHHHCCCC
Q psy14485 263 LEFIRTIAVARITMPTS 279 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~~ 279 (348)
+++..+++-+-..+|..
T Consensus 243 eeYv~~~~d~le~lpp~ 259 (312)
T COG1242 243 EEYVELVCDQLEHLPPE 259 (312)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999887777763
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=152.38 Aligned_cols=179 Identities=25% Similarity=0.447 Sum_probs=142.8
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--C
Q psy14485 69 SIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--G 146 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~ 146 (348)
.+ +++|+++|.||......... ... ....+++...+......+...+.++|| + |... ..+.++++.+++. +
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~gg-e-p~~~--~~~~~~i~~~~~~~~~ 74 (204)
T cd01335 2 EL-TRGCNLNCGFCSNPASKGRG-PES-PPEIEEILDIVLEAKERGVEVVILTGG-E-PLLY--PELAELLRRLKKELPG 74 (204)
T ss_pred cc-CCccCCcCCCCCCCCCCCCC-ccc-cccHHHHHHHHHHHHhcCceEEEEeCC-c-CCcc--HhHHHHHHHHHhhCCC
Confidence 34 89999999999988754222 111 111145666666666678888888777 3 3222 2788888888876 6
Q ss_pred cEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC-CCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCH
Q psy14485 147 LETCLT--LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII-STRDYENRLNTLKNVRNVGINICCGGIIGL-SESR 221 (348)
Q Consensus 147 ~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~-~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~ 221 (348)
+.+.+. ...++++.++.|+++|++++.+++|+ ++..++.++ +..++++++++++.+++.|+.+.+.+++|+ +++.
T Consensus 75 ~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 75 FEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred ceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChh
Confidence 666544 44558999999999999999999999 788999888 678999999999999999999999999999 7777
Q ss_pred HHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 222 DQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 222 e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+++.++++.+.+... ++.+.+++|.|.||||++
T Consensus 155 ~~~~~~~~~l~~~~~-~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRS-PDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcC-cchhhhhhhcccCCCeee
Confidence 999999999988853 688999999999999998
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=157.01 Aligned_cols=217 Identities=15% Similarity=0.230 Sum_probs=164.1
Q ss_pred CCceEEEEEEEeecCCCCC-CCCcCCCCC------CCCCCC------ccccccCHHHHHHHHHHHHhCCCCE----EEEe
Q psy14485 59 ANEIELAVLLSIKTGGCTE-DCGYCPQST------HYNTEI------TATKILSIESVITAAQKAKSDGATR----FCMG 121 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~-~C~fC~~~~------~~~~~~------~~~~~~~~eei~~~~~~~~~~G~~~----i~l~ 121 (348)
...|.+.+++-- -.+||+ +|.||...- .+.... ...+.-+-.++...++++...|-.. +.|-
T Consensus 62 ~sgvaVVaVmt~-p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 62 ISGVAVVAVMTS-PHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred cccceEEEEecC-CCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 345665554433 789997 999999772 221100 0111235578888888888887432 3444
Q ss_pred ccCCCCCcccHHHHHHHHHHHHh-----------------------cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 122 AAWRELKDRDLDNIENMICEVKK-----------------------IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 122 gg~~~~~~~~~~~~~~l~~~i~~-----------------------~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
|| +. +..+.++-.++++.+.+ .++.+.+.|.-.+++.++.|++.|+++|.+|+||
T Consensus 141 GG-TF-ta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQS 218 (515)
T COG1243 141 GG-TF-TALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQS 218 (515)
T ss_pred cc-cc-cCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeee
Confidence 55 22 23444444444433322 1355666788899999999999999999999999
Q ss_pred -CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCC-CCCeeecccccccCCCCCC
Q psy14485 179 -SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNP-YPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 179 -~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~-~~~~i~~~~l~P~~gT~l~ 255 (348)
.++++++.+|+|+++++.++.+.++++|++++.++|.|| |.+.+--++++..+-+... .||.+.++|....+||+|+
T Consensus 219 iyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly 298 (515)
T COG1243 219 IYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELY 298 (515)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHH
Confidence 799999999999999999999999999999999999999 9998877777766666543 5899999999999999997
Q ss_pred C------CCCCCHHHHHHHHHHHHHHCCC
Q psy14485 256 G------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 256 ~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
+ +.+.+.++..++++.+..++|.
T Consensus 299 ~mwk~G~Ykpy~~EEaVeli~~i~~~~p~ 327 (515)
T COG1243 299 EMWKRGLYKPYTTEEAVELIVEIYRLEPK 327 (515)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5 5789999999999998888887
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=154.98 Aligned_cols=206 Identities=17% Similarity=0.273 Sum_probs=156.2
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. .+++ |+.|+.+|.||...............++.+++.+.++.+.+.|++.|.|+|| ++... ..+
T Consensus 4 ~~-gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGG-EPll~---~~l 76 (334)
T TIGR02666 4 RF-GRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGG-EPLLR---KDL 76 (334)
T ss_pred CC-CCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECc-ccccc---CCH
Confidence 45 6777654 4677 9999999999987641110111233589999999999998999999999987 43322 357
Q ss_pred HHHHHHHHh-cCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCe-e
Q psy14485 136 ENMICEVKK-IGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGIN-I 209 (348)
Q Consensus 136 ~~l~~~i~~-~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~-i 209 (348)
.++++.+++ .++ .+.+ +.|.+..+.++.|+++|+++|.+++++ +++.++.+.+ +.++++++++++.++++|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 777777776 355 5554 466777789999999999999999999 7999999985 57999999999999999996 8
Q ss_pred eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-CCCCCCHHHHHHHHHH
Q psy14485 210 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTIAV 271 (348)
Q Consensus 210 ~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-~~~~~~~~~~~~~~a~ 271 (348)
.+.+++..|.+.+++.+.++++++++ + .+.+..|+|..++.-+ .....+.+++++.++.
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~ 216 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQ 216 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHh
Confidence 87765545889999999999999997 4 4677788888766432 2234566666666543
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=153.87 Aligned_cols=205 Identities=19% Similarity=0.255 Sum_probs=154.5
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. .+++ |+.|+.+|.||..... ........++.+|+.+.++.+.+.|++.|.|+|| ++.. ...+
T Consensus 8 ~~-gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGG-EPll---r~dl 78 (329)
T PRK13361 8 SF-GRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGG-EPLV---RRGC 78 (329)
T ss_pred CC-CCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECc-CCCc---cccH
Confidence 45 6777644 4677 9999999999984421 1112233589999999999888899999999987 4332 2457
Q ss_pred HHHHHHHHhcC-c-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy14485 136 ENMICEVKKIG-L-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~~-~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++.+ + .+.+ +.|.+..+.++.|+++|++++++++++ +++.|+.+++..+++++++.++.++++|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 78888887753 3 3432 346555678999999999999999999 79999999988899999999999999999 677
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-CCCCCCCCHHHHHHHHHHH
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-LYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-l~~~~~~~~~~~~~~~a~~ 272 (348)
...++--|++.+++.+.++++.+++ ++ +.+..++|..+.. ......++.+++.+.+...
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~ 218 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--LD-IAFIEEMPLGEIDERRRARHCSSDEVRAIIETR 218 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--Ce-EEEEecccCCCccchhhccCcCHHHHHHHHHHh
Confidence 6655433899999999999999998 64 5577788875433 1223456777777766443
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=168.28 Aligned_cols=186 Identities=20% Similarity=0.318 Sum_probs=140.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEE-------EEeccCCCCCcccHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRF-------CMGAAWRELKDRDLDNIEN 137 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i-------~l~gg~~~~~~~~~~~~~~ 137 (348)
...+++ ++|||.+|.||+.+..+ .++.++++.++++++...+.|...+ ++.++ .. ...+...+
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~-~~---~~~~~~~~ 268 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGS-PA---LNDEKRFE 268 (490)
T ss_pred EEEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCC-cc---ccchhhcc
Confidence 356788 99999999999988753 2344678888888887766665553 22222 10 01122222
Q ss_pred HH-HHHHhcC------cEEEE---ecCCCC-HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHH-HHHHHHH
Q psy14485 138 MI-CEVKKIG------LETCL---TLGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLN-TLKNVRN 204 (348)
Q Consensus 138 l~-~~i~~~~------~~i~~---~~g~l~-~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~-~i~~~~~ 204 (348)
.+ ..+.+.. +++.+ .+..++ ++.++.++++|..++.+|+|| ++++++.++++++.++..+ +++.+++
T Consensus 269 ~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~ 348 (490)
T COG1032 269 LLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKE 348 (490)
T ss_pred cchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 22 2233221 23332 355777 889999999999999999999 8999999999999999995 9999999
Q ss_pred cCCeeeEeEeeec-CCCHHHHHHH---HHHHHhcCCCCC-eeecccccccCCCCCCCCCCCCH
Q psy14485 205 VGINICCGGIIGL-SESRDQRAEL---IFQLANLNPYPE-SVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 205 ~G~~i~~~~i~Gl-get~e~~~~~---l~~l~~l~~~~~-~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
+|+.+..++|+|+ |||.+++..+ ++++.+++ +. .+.+++|+|.|||++++......
T Consensus 349 ~~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~ 409 (490)
T COG1032 349 HGLRVKLYFIVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLEN 409 (490)
T ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccc
Confidence 9999999999999 9999999998 68888887 54 78999999999999988654333
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=154.64 Aligned_cols=205 Identities=17% Similarity=0.272 Sum_probs=156.3
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. -+++ |..|+.+|.||......... .....++.+++.+.++.+.+.|++.|.|+|| + |.. ...+
T Consensus 52 ~~-gr~~~~l-risv-T~~CNlrC~yC~~~~~~~~~-~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGG-E-Pll--r~dl 123 (373)
T PLN02951 52 SF-GRRHNYL-RISL-TERCNLRCQYCMPEEGVELT-PKSHLLSQDEIVRLAGLFVAAGVDKIRLTGG-E-PTL--RKDI 123 (373)
T ss_pred CC-CCcccEE-EEEE-cCCcCcCCCCCCCCcCCCCC-CccccCCHHHHHHHHHHHHHCCCCEEEEECC-C-Ccc--hhhH
Confidence 45 5655543 4677 99999999999865321111 1223489999999999888899999999987 4 322 2357
Q ss_pred HHHHHHHHhc-CcE-EEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy14485 136 ENMICEVKKI-GLE-TCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~-~~~-i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++. ++. +.+ ++|.+..+.++.|+++|+++|.+++++ +++.|+.+.+.+.++.+++.++.++++|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 8888888874 653 443 467666788999999999999999999 79999999887889999999999999998 466
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
..+.+-.|.+.+++.+.++++++.+ -.+.+..|+|..+++.......+.++.++.+..
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHH
Confidence 6544333789999999999999986 467888899999887654445667777776654
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=141.79 Aligned_cols=192 Identities=22% Similarity=0.363 Sum_probs=152.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhcCc--E
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGL--E 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~~~--~ 148 (348)
+..|..+|.||+..... +- .++++|-.+.++....+|.+.|.|++-.. ++.+.....+.+.+++|++... .
T Consensus 77 G~~CTR~C~FC~V~~g~-----P~-~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~ 150 (306)
T COG0320 77 GDICTRRCRFCDVKTGR-----PN-PLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306)
T ss_pred cchhccCCCccccCCCC-----CC-CCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCce
Confidence 78999999999987631 11 37888999999888999999999987532 3445677899999999998643 3
Q ss_pred EEE-ecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcC--CeeeEeEeeecCCCHHHH
Q psy14485 149 TCL-TLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQR 224 (348)
Q Consensus 149 i~~-~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~~~i~Glget~e~~ 224 (348)
+.+ .+.. =..+.++.+.++|.+-+++++||.++++..++++.+|+.-++.++.+++.+ +.+.+++|+|||||.+++
T Consensus 151 iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev 230 (306)
T COG0320 151 IEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEV 230 (306)
T ss_pred EEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHH
Confidence 332 2221 256789999999999999999999999999999999999999999999998 778899999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeccccc-ccC-CCCCCCCCCCCHHHHHHHHHHHH
Q psy14485 225 AELIFQLANLNPYPESVPINNLV-QIK-GTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~~l~-P~~-gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
.++++.|++.+ ++.+.+..|. |.. .-|... -.+++++..+-.++.
T Consensus 231 ~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~r--yv~PeeF~~~~~~a~ 277 (306)
T COG0320 231 IEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQR--YVTPEEFDELEEVAE 277 (306)
T ss_pred HHHHHHHHHcC--CCEEEeccccCCccccCCcee--ccCHHHHHHHHHHHH
Confidence 99999999999 9999987654 432 123322 345555555444444
|
|
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=161.61 Aligned_cols=221 Identities=13% Similarity=0.179 Sum_probs=155.4
Q ss_pred cCCCCCHHHHHHhhcCChHHHHHHHHHHHH--hhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy14485 25 QSLIWKLDEVINLFNLPFNDLLFRAQKVHR--KYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~--~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
+...||.+|...+++.|+....+....-.. ..+ +.|. ..|.+ ++||+..|+||..+.+.+. .++.+++++
T Consensus 255 p~~~l~~~e~d~~y~lpy~r~~hp~y~~~g~ipa~--~~i~--~sI~i-~RGC~g~CSFCaIp~~rGr---~~rSRs~es 326 (620)
T PRK00955 255 PAPPLTQEELDEVYDLPYTRTYHPSYEEKGGIPAI--EEVK--FSITS-HRGCFGGCSFCAITFHQGR---FIQSRSQES 326 (620)
T ss_pred CCCCCChhhhhhccCCCcccCcchhhccCCCCCce--eeEE--EEEEe-eCCCCCCCCCCCeecccCC---cceecCHHH
Confidence 355689999999999886544433332110 011 2333 34667 9999999999998875322 334589999
Q ss_pred HHHHHHHHHhC-CCCEEEE-eccCCCCC----------------------------cccHHHHHHHHHHHHhc-Cc-EEE
Q psy14485 103 VITAAQKAKSD-GATRFCM-GAAWRELK----------------------------DRDLDNIENMICEVKKI-GL-ETC 150 (348)
Q Consensus 103 i~~~~~~~~~~-G~~~i~l-~gg~~~~~----------------------------~~~~~~~~~l~~~i~~~-~~-~i~ 150 (348)
|+++++.+.+. |++.+.. .||.+... ..+...+.++++++++. ++ .+.
T Consensus 327 Iv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~ 406 (620)
T PRK00955 327 ILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVF 406 (620)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCceEEE
Confidence 99999998876 7877631 33311100 01235789999999874 44 344
Q ss_pred EecC----C----CCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCCCC--HHHHHHH-HHHHHHcCCe--eeEeEee
Q psy14485 151 LTLG----M----LNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIISTRD--YENRLNT-LKNVRNVGIN--ICCGGII 215 (348)
Q Consensus 151 ~~~g----~----l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~~~--~~~~~~~-i~~~~~~G~~--i~~~~i~ 215 (348)
++.| . .+++.++.|.+.++. .+.+++|| ++++++.++++.. +++.++. .+.++++|+. +..++|+
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIv 486 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMS 486 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEE
Confidence 4433 2 234578888886544 68899999 8999999988631 2333333 3455678875 8899999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
|+ |||.+|+.++++++++++ ++.+.++.|.|.|||+-.
T Consensus 487 GfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 487 SHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLST 525 (620)
T ss_pred ECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcchh
Confidence 99 999999999999999998 899999999999998754
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=161.15 Aligned_cols=221 Identities=15% Similarity=0.229 Sum_probs=163.1
Q ss_pred CCCCCHHHHHHhhcCChHHHHHHHHHHH-HhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy14485 26 SLIWKLDEVINLFNLPFNDLLFRAQKVH-RKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 26 ~~~ls~~e~~~Ll~~~~~~l~~~A~~~~-~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
-..||.+|...++++|+....+-...-. -..+ +.+. ..|.+ ++||+.+|+||+.+.+.+. .++.+++++|+
T Consensus 337 ~~plt~~ElD~vy~LPy~R~~HP~Y~~~~ipA~--e~i~--~sV~i-~RGC~g~CSFCaI~~hqGr---~irSRS~esIL 408 (707)
T PRK01254 337 AIPLSTEEMDSVFALPYARVPHPAYGKARIPAY--DMIR--FSVNI-MRGCFGGCSFCSITEHEGR---IIQSRSEESII 408 (707)
T ss_pred cCCCCHHHHHHHhCCCcccccCcccccCCCCch--hheE--EEEEE-ccCCCCCCCccccccccCC---eeeeCCHHHHH
Confidence 4468999999999987543332222211 0111 2232 34667 9999999999998876422 24458999999
Q ss_pred HHHHHHHhC--CCCEEE--EeccCCCCCc---------------------------ccHHHHHHHHHHHHhc-Cc-EEEE
Q psy14485 105 TAAQKAKSD--GATRFC--MGAAWRELKD---------------------------RDLDNIENMICEVKKI-GL-ETCL 151 (348)
Q Consensus 105 ~~~~~~~~~--G~~~i~--l~gg~~~~~~---------------------------~~~~~~~~l~~~i~~~-~~-~i~~ 151 (348)
++++.+.+. |++.+. ++|-..+.+. .+...+.++++++++. ++ .+.+
T Consensus 409 ~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI 488 (707)
T PRK01254 409 NEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILI 488 (707)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 999999863 999987 5554222211 1235789999999873 44 3443
Q ss_pred ecC---C---CCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC--CCHHHHHHHHHHHHH-cCC--eeeEeEeeec-
Q psy14485 152 TLG---M---LNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST--RDYENRLNTLKNVRN-VGI--NICCGGIIGL- 217 (348)
Q Consensus 152 ~~g---~---l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~--~~~~~~~~~i~~~~~-~G~--~i~~~~i~Gl- 217 (348)
..| . .+++.++.|.+.++. .+.+.+|+ ++++|+.|+++ .+++++.+.++.+++ .|. .+..++|+|+
T Consensus 489 ~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhP 568 (707)
T PRK01254 489 ASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHP 568 (707)
T ss_pred EcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECC
Confidence 322 2 257899999988776 67889999 89999999986 688999999999876 564 5667999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccC---CCCCCC
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIK---GTPLYG 256 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~---gT~l~~ 256 (348)
|+|.+|+.++++++++++ .+.-.++.|+|.| +|.|+.
T Consensus 569 GeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 569 GTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHHh
Confidence 999999999999999998 7788889999999 888764
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=140.93 Aligned_cols=157 Identities=20% Similarity=0.365 Sum_probs=119.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh--
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-- 144 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-- 144 (348)
|++ +++|+++|.||..+..... .....++++++++.++.+ ...|+..+.++|| + |... ..+.+++..+.+
T Consensus 1 i~~-~~~C~~~C~fC~~~~~~~~--~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~g-e-p~~~--~~~~~~~~~~~~~~ 73 (166)
T PF04055_consen 1 IET-TRGCNLNCSFCYYPRSRRK--NKPREMSPEEILEEIKELKQDKGVKEIFFGGG-E-PTLH--PDFIELLELLRKIK 73 (166)
T ss_dssp EEE-ESEESS--TTTSTTTTCCT--CGCEECHHHHHHHHHHHHHHHTTHEEEEEESS-T-GGGS--CHHHHHHHHHHHCT
T ss_pred CEE-CcCcCccCCCCCCCccCCC--cccccCCHHHHHHHHHHHhHhcCCcEEEEeec-C-CCcc--hhHHHHHHHHHHhh
Confidence 355 8999999999998874111 223358999999999999 5778777788776 2 3221 233444444443
Q ss_pred -cCcEEEE--ecCCCCHHHHHHHHHhCCCeeeccCCC-CHH-HHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-C
Q psy14485 145 -IGLETCL--TLGMLNENQAYRLKKVGLDYYNHNLDT-SPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S 218 (348)
Q Consensus 145 -~~~~i~~--~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e-~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-g 218 (348)
.+..+.+ +....+++.++.|+++|++++.++++| +++ +.+.+++++++++++++++.++++|+.....+|+|+ |
T Consensus 74 ~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 74 KRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred ccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 2555543 444556999999999999999999999 788 888888889999999999999999998677778888 9
Q ss_pred CCHHHHHHHHHHH
Q psy14485 219 ESRDQRAELIFQL 231 (348)
Q Consensus 219 et~e~~~~~l~~l 231 (348)
+|.+++.++++++
T Consensus 154 ~~~~e~~~~~~~i 166 (166)
T PF04055_consen 154 ENDEEIEETIRFI 166 (166)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcC
Confidence 9999999998875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=148.56 Aligned_cols=206 Identities=18% Similarity=0.272 Sum_probs=154.7
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |+.+.+. .+++ |.+|+.+|.||....... .......++.+++.+.++.+.+.|++.|.|+|| ++... ..+
T Consensus 11 ~~-~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGG-EPll~---~~l 82 (331)
T PRK00164 11 RF-GRKFTYL-RISV-TDRCNFRCTYCMPEGYLP-FLPKEELLSLEEIERLVRAFVALGVRKVRLTGG-EPLLR---KDL 82 (331)
T ss_pred CC-CCccCeE-EEEE-cCCcCcCCCCCCCccCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEECC-CCcCc---cCH
Confidence 45 6777644 4677 999999999998654211 112334589999999999888889999999987 43322 457
Q ss_pred HHHHHHHHhc--CcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy14485 136 ENMICEVKKI--GLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~--~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++. ...+.+ +.|.+..+.++.|+++|++++.+++++ +++.++.+++..++++++++++.++++|+ .+.
T Consensus 83 ~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 83 EDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 7888888764 234443 346555678999999999999999999 79999999988999999999999999998 777
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-CCCCCCCCHHHHHHHHHHH
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-LYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-l~~~~~~~~~~~~~~~a~~ 272 (348)
..+++-.|.+.+++.+.++++++++ + .+.+..|+|.++.. +......+.+++.+.+...
T Consensus 163 i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (331)
T PRK00164 163 VNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAER 222 (331)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhc
Confidence 7654433888899999999999987 4 56777788876543 3333446677777766543
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=145.22 Aligned_cols=202 Identities=18% Similarity=0.268 Sum_probs=151.0
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+... .+++ |+.|+.+|.||...... . .....++.+++.+.++.+...|++.|.|+|| ++... ..+
T Consensus 4 ~~-gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~-~--~~~~~ls~eei~~~i~~~~~~gi~~I~~tGG-EPll~---~~l 73 (302)
T TIGR02668 4 RF-GRPVTSL-RISV-TDRCNLSCFYCHMEGED-R--SGGNELSPEEIERIVRVASEFGVRKVKITGG-EPLLR---KDL 73 (302)
T ss_pred CC-CCccCeE-EEEE-cccccCCCCCCCccccC-C--CccCcCCHHHHHHHHHHHHHcCCCEEEEECc-ccccc---cCH
Confidence 35 6666554 5677 99999999999876421 1 1123589999999888888889999999987 43222 346
Q ss_pred HHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeE
Q psy14485 136 ENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~ 211 (348)
.++++.+++.++ .+.+ +.|.+..+.++.|+++|+++|++++++ +++.++.+++..++++++++++.++++|+. +..
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 778888887665 5554 356666788999999999999999999 799999998888999999999999999985 776
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCCCCCCCCHHHHHHHHH
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIA 270 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~~~~~~~~~~~~~~~a 270 (348)
.+++--|++.+++.+.++++++++ . .+.+..++|.... ..+.....+..++...+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~ 210 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELE 210 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHH
Confidence 655433899999999999999987 4 4677777876532 122222345555554443
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=137.83 Aligned_cols=205 Identities=18% Similarity=0.317 Sum_probs=155.3
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. -+++ |..|+++|.||-........ ++-..+++|||...++.+.+.|++.|-|+|| ++. -...+
T Consensus 5 ~~-gR~~~~L-RiSv-TdrCNfrC~YCm~eg~~~~~-~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGG-EPl---lR~dl 76 (322)
T COG2896 5 RF-GRPVRYL-RISV-TDRCNFRCTYCMPEGPLAFL-PKEELLSLEEIRRLVRAFAELGVEKVRLTGG-EPL---LRKDL 76 (322)
T ss_pred cc-CCEeceE-EEEE-ecCcCCcccccCCCCCcccC-cccccCCHHHHHHHHHHHHHcCcceEEEeCC-Cch---hhcCH
Confidence 35 5656544 3567 99999999999876522112 2212589999999999999999999999998 422 23567
Q ss_pred HHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeE
Q psy14485 136 ENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~ 211 (348)
.++++.+++.++ ++.+ ++|.+.+..++.||+||+++|+++++| +++.|+.|.+...++++++.++.|.++|+. +..
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 788888876432 3444 478899999999999999999999999 899999998766799999999999999994 777
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CCCCCHHHHHHHHHH
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SSILDPLEFIRTIAV 271 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~~~~~~~~~~~~a~ 271 (348)
++.+=-|-+.+++.+.++++...+ + .+.|-.|+|.....-+. ....+..+..+.+..
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHh
Confidence 644422678899999999999997 3 67777888775422111 134667777777666
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-15 Score=139.55 Aligned_cols=175 Identities=22% Similarity=0.334 Sum_probs=138.7
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+...+++ |+.|+.+|.||........ ....++.+++.+.++++.+.|+..|.|+|| +.. . ...+.++++.++
T Consensus 16 ~~l~i~i-T~~CNl~C~~C~~~~~~~~---~~~~~~~e~~~~ii~~~~~~g~~~v~~~GG-EPl-l--~~~~~~il~~~~ 87 (378)
T PRK05301 16 LWLLAEL-TYRCPLQCPYCSNPLDLAR---HGAELSTEEWIRVLREARALGALQLHFSGG-EPL-L--RKDLEELVAHAR 87 (378)
T ss_pred eEEEEEe-cCccCcCCCCCCCcccccc---ccCCCCHHHHHHHHHHHHHcCCcEEEEECC-ccC-C--chhHHHHHHHHH
Confidence 4456788 9999999999986542211 123588999999999888899999999987 432 2 245789999998
Q ss_pred hcCcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCC
Q psy14485 144 KIGLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSE 219 (348)
Q Consensus 144 ~~~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glge 219 (348)
+.++.+. +|...++++.++.|+++|++.|.+++++ +++.++.++... +++.++++++.+++.|+.+.+.+++ ..+
T Consensus 88 ~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~~ 166 (378)
T PRK05301 88 ELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HRH 166 (378)
T ss_pred HcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ecC
Confidence 8766543 3444689999999999999999999999 689999887754 8999999999999999987655432 278
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 220 SRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 220 t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.+++.+.++++.+++ ++.+.+..+.|.
T Consensus 167 N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 167 NIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 8999999999999998 888887766553
|
|
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=120.52 Aligned_cols=93 Identities=51% Similarity=0.818 Sum_probs=83.9
Q ss_pred ecccccccCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc
Q psy14485 242 PINNLVQIKGTPLYGS-SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT 320 (348)
Q Consensus 242 ~~~~l~P~~gT~l~~~-~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~ 320 (348)
++++|+|.+||||++. +.++.++.++++|++|+++|++.|++++|++.+.++.+..++.+|||+++.|..++|+.|...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 4788999999999987 789999999999999999999999999998776677888889999999998875668888888
Q ss_pred hHHHHHHHHcCCCc
Q psy14485 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
.++.++++++||+|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 88889999999986
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=135.17 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=150.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
.+.+.+ |++|+.+|.||......... ....++.+++.+.++.+.+. |+..|.|+|| .|...+.+.+.++++.++
T Consensus 89 rvll~v-T~~C~~~Cr~C~r~~~~~~~--~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG--DPl~~~~~~L~~ll~~l~ 163 (321)
T TIGR03822 89 RVLLKP-VHVCPVYCRFCFRREMVGPE--GLGVLSPAELDAAFAYIADHPEIWEVILTGG--DPLVLSPRRLGDIMARLA 163 (321)
T ss_pred EEEEEe-cCCCCCcCcCCCchhhcCCc--ccCcCCHHHHHHHHHHHHhCCCccEEEEeCC--CcccCCHHHHHHHHHHHH
Confidence 345667 99999999999865432211 11235778888888887754 8999999998 344445678999999988
Q ss_pred hcC-c---EEEE-----ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE-e
Q psy14485 144 KIG-L---ETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC-G 212 (348)
Q Consensus 144 ~~~-~---~i~~-----~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~-~ 212 (348)
+.+ + .++. ++..++++.++.|+++|. .+.+++++ .++.+ .++..++++.++++|+.+.. .
T Consensus 164 ~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~ 234 (321)
T TIGR03822 164 AIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQS 234 (321)
T ss_pred hCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEe
Confidence 753 2 3332 345689999999999995 47888888 43322 37899999999999998754 3
Q ss_pred -EeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc
Q psy14485 213 -GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR 280 (348)
Q Consensus 213 -~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~ 280 (348)
++-|..++.+++.+.++++.+++ +....++.+.|.+||..+ ..+.++..+++..++-.++...
T Consensus 235 vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g~~ 298 (321)
T TIGR03822 235 VLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISGLA 298 (321)
T ss_pred eEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCCCc
Confidence 33377999999999999999998 888889999999998655 3778889999999998888743
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=121.25 Aligned_cols=92 Identities=38% Similarity=0.624 Sum_probs=70.7
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchH
Q psy14485 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTND 322 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~ 322 (348)
++.|+|.+|||+++..++++++.+++++++|+++|++.|++++|+.....+.+..++.+|||+++.|+|+.+.+.++.++
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~ 81 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDE 81 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHH
Confidence 45699999999999999999999999999999999999999999876555577899999999999999864444488999
Q ss_pred HHHHHHHcCCCc
Q psy14485 323 DSKLLKKLGINT 334 (348)
Q Consensus 323 ~~~~i~~~G~~p 334 (348)
+.++|+++||+|
T Consensus 82 d~~~i~~lG~~P 93 (93)
T PF06968_consen 82 DIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHTT-ES
T ss_pred HHHHHHHcCCCC
Confidence 999999999987
|
8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=138.23 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=153.8
Q ss_pred EEEeecCCCCCCCCcCCCCCC-C---CCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTH-Y---NTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~-~---~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.+.+ +++|+.+|.||..... . ..+. ..+.++++|+++.++..... ++..|.|.|.|++ ....+...+.++
T Consensus 27 ~~~v-t~~CNl~C~yC~~~~~~~~esrpg~-~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP--Ll~~e~~~~~l~ 102 (442)
T TIGR01290 27 HLAV-APACNIQCNYCNRKYDCANESRPGV-VSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDP--LANIGKTFQTLE 102 (442)
T ss_pred EEec-CCCCCCcCcCCCCCCCCCcCCCCcc-ccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc--ccCccccHHHHH
Confidence 4566 9999999999985321 1 1111 12358999999999877653 5677888883343 234566778888
Q ss_pred HHHhc--CcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC----------CCC-----CHHHHHHHHHH
Q psy14485 141 EVKKI--GLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII----------STR-----DYENRLNTLKN 201 (348)
Q Consensus 141 ~i~~~--~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~----------~~~-----~~~~~~~~i~~ 201 (348)
.+++. ++.++++ .|.+.++.++.|.++|++.|.+++.+ +++.++.|. ++. .++..++.++.
T Consensus 103 ~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~ 182 (442)
T TIGR01290 103 LVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEK 182 (442)
T ss_pred HHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHH
Confidence 88774 7888775 67777999999999999999999999 799988762 122 15667899999
Q ss_pred HHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC--CCCCC--CCCCCCHHHHHHHHHHHHHHCC
Q psy14485 202 VRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK--GTPLY--GSSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 202 ~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~--gT~l~--~~~~~~~~~~~~~~a~~R~~lp 277 (348)
+.+.|+.+.+..++-.|.+.+++.+..+++++++ +..+.+.+|+|.| |+++. +.++++.+++.++...++..+|
T Consensus 183 l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 183 LTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 9999987654444333556689999999999998 7788899999888 88864 4577899988888887776665
Q ss_pred C
Q psy14485 278 T 278 (348)
Q Consensus 278 ~ 278 (348)
.
T Consensus 261 ~ 261 (442)
T TIGR01290 261 Q 261 (442)
T ss_pred h
Confidence 4
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=127.44 Aligned_cols=195 Identities=18% Similarity=0.256 Sum_probs=142.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC---CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG---ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+.+|+++|.||.....+.. .....++++++++.+..+.... ...|.|+|| + | ....+.+.++++.+++.++.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~--~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GG-E-P-ll~~~~~~~li~~~~~~g~~ 96 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDL--KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGG-E-P-LLQPEFLSELFKACKELGIH 96 (235)
T ss_pred ECCCCCcCCCCCChhhccC--CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCc-c-c-ccCHHHHHHHHHHHHHCCCC
Confidence 7899999999986543322 1223479999998887765432 257889887 4 3 24556678999999987766
Q ss_pred EEE-ecCCCC--HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHH
Q psy14485 149 TCL-TLGMLN--ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRD 222 (348)
Q Consensus 149 i~~-~~g~l~--~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e 222 (348)
+.+ +.|.+. .+.+..+.+ .++.+.+++++ +++.++++++. +++..+++++.+++.|+.+...+++ |..++.+
T Consensus 97 ~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ 174 (235)
T TIGR02493 97 TCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEE 174 (235)
T ss_pred EEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHH
Confidence 554 455433 566666665 47889999999 78999888655 8899999999999999976555444 3356789
Q ss_pred HHHHHHHHHHhcCCCCCeeeccccccc---------CCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 223 QRAELIFQLANLNPYPESVPINNLVQI---------KGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P~---------~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
++.+.++++.+++. +..+.+.+|.|. +..++.+.++++.+++.+..++++.
T Consensus 175 ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 175 DIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred HHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999973 467777888774 2334556678888888888777763
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-14 Score=133.70 Aligned_cols=173 Identities=21% Similarity=0.317 Sum_probs=135.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
...+++ |+.|+.+|.||........ ....++.+++.+.++++.+.|+..|.|+|| +.. . .+.+.++++.+++
T Consensus 8 ~l~iei-T~~CNl~C~~C~~~~~~~~---~~~~l~~e~~~~ii~~~~~~g~~~v~~~GG-EPl-l--~~~~~~ii~~~~~ 79 (358)
T TIGR02109 8 WLLAEL-THRCPLQCPYCSNPLELAR---RKAELTTEEWTDVLTQAAELGVLQLHFSGG-EPL-A--RPDLVELVAHARR 79 (358)
T ss_pred EEEEee-ccccCcCCCCCCCChhccc---ccCCCCHHHHHHHHHHHHhcCCcEEEEeCc-ccc-c--cccHHHHHHHHHH
Confidence 445778 9999999999986532111 123488999999999888899999999987 432 2 2357788888888
Q ss_pred cCcEEEE-ecC-CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCC
Q psy14485 145 IGLETCL-TLG-MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSES 220 (348)
Q Consensus 145 ~~~~i~~-~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget 220 (348)
.++.+.+ +.| .++++.++.|+++|++.|.+++++ .++.++++++. .+++..+++++.+++.|+.+.+.+.+ ..++
T Consensus 80 ~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~N 158 (358)
T TIGR02109 80 LGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRHN 158 (358)
T ss_pred cCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccCC
Confidence 7765443 344 689999999999999999999999 68999988764 47999999999999999987554332 2789
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 221 RDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
.+++.+.++++.+++ ++.+.+..+.|
T Consensus 159 ~~~l~~~~~~~~~lg--~~~i~~~~~~~ 184 (358)
T TIGR02109 159 IDQIPEIIELAIELG--ADRVELATTQY 184 (358)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEeeec
Confidence 999999999999998 88887765443
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-14 Score=129.32 Aligned_cols=219 Identities=14% Similarity=0.187 Sum_probs=152.1
Q ss_pred ChHHHHHHHHHHHHhhcCC-CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEE
Q psy14485 41 PFNDLLFRAQKVHRKYFDA-NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFC 119 (348)
Q Consensus 41 ~~~~l~~~A~~~~~~~~~g-~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~ 119 (348)
|+..-+..+.++-+++..| ++..+...+++ |..|+.+|.||....... .. ....++++++.+.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~~-~~-~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPA-EI-LKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCCC-cc-cccCCCHHHHHHHHH---HcCCCEEE
Confidence 4444444555554544433 33335556778 999999999998654321 11 112478998887654 46888899
Q ss_pred EeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHH
Q psy14485 120 MGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLN 197 (348)
Q Consensus 120 l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~ 197 (348)
|.|| ++... .++.++++.+++.+..+.+ +.|.+-.+.+..++++|...+++++++.++.++.+. +..+++..++
T Consensus 78 i~GG-EPLL~---pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~ 153 (318)
T TIGR03470 78 IPGG-EPLLH---PEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVE 153 (318)
T ss_pred EeCc-ccccc---ccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHH
Confidence 9887 53322 4578888888876655543 456666677899999999999999999667776664 4569999999
Q ss_pred HHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHH
Q psy14485 198 TLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 198 ~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~ 272 (348)
+++.+++.|+.+.+...+=-+++.+++.+.++++.+++ ++.+.+.+..|...++-.+ ..++.++..+.+...
T Consensus 154 ~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~~ 225 (318)
T TIGR03470 154 AIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFREV 225 (318)
T ss_pred HHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHHH
Confidence 99999999998766544323789999999999999998 8888888777765444322 234555655554443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-13 Score=119.73 Aligned_cols=196 Identities=13% Similarity=0.186 Sum_probs=141.9
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+.+|+.+|.||..+..+... ..+.++++|+++++...... ....|.|+|| + | ....+.+.++++.+++.++.
T Consensus 27 ~~gCnl~C~~C~~~~~~~~~--~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGG-E-P-ll~~~~~~~l~~~~k~~g~~ 101 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDTH--GGKEVTVEELMKEVVTYRHFMNASGGGVTASGG-E-A-ILQAEFVRDWFRACKKEGIH 101 (246)
T ss_pred ECCCCCcCCCCCCHHHCCCC--CCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCc-c-H-hcCHHHHHHHHHHHHHcCCC
Confidence 69999999999965432211 12347999999888765432 3457888887 4 3 34667778999999988887
Q ss_pred EEEe-cCCCC--HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE--eEeeecCCCHH
Q psy14485 149 TCLT-LGMLN--ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESRD 222 (348)
Q Consensus 149 i~~~-~g~l~--~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~--~~i~Glget~e 222 (348)
+.+. .|.+. .+.++.+.+ .+|.+.+++++ +++.++.+.+. +.+..++.++.+++.|+++.. .++-|..++.+
T Consensus 102 i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd~~~ 179 (246)
T PRK11145 102 TCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDD 179 (246)
T ss_pred EEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHH
Confidence 7654 56553 477777766 47999999999 78888888654 557888999999999986554 44555567778
Q ss_pred HHHHHHHHHHhcCCCCCeeecccccccCCC---------CCCCCCCCCHHHHHHHHHHHHHH
Q psy14485 223 QRAELIFQLANLNPYPESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT---------~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
++.+.++++..++. +..+.+.+|.|.++. ++.+.++++.+++.+...+++..
T Consensus 180 ei~~l~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 180 SAHRLGEFIKDMGN-IEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred HHHHHHHHHHhcCC-cceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 89999999988852 567778888876543 34456778888887777666643
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=110.91 Aligned_cols=156 Identities=16% Similarity=0.277 Sum_probs=112.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL 151 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 151 (348)
|++|+.+|.||..+.... ......++++++.+.++... ..++.|.|+|| + |. ...+ +.++++.+++.++.+.+
T Consensus 23 t~~Cnl~C~~C~~~~~~~--~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGG-E-Pl-l~~~-l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELID--REGSGEIEVEFLLEFLRSRQ-GLIDGVVITGG-E-PT-LQAG-LPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCCCCCCCCCCCccccC--CCCCCcCCHHHHHHHHHHhc-CCCCeEEEECC-c-cc-CcHh-HHHHHHHHHHCCCeEEE
Confidence 899999999998764211 12223478999999887652 23678999887 4 32 2333 88888888888877776
Q ss_pred ecCCCCHHHHHHHHHhC-CCeeeccCCCCHHHHhcc-CCCCCHH-HHHHHHHHHHHcCCeeeEeE--eeecCCCHHHHHH
Q psy14485 152 TLGMLNENQAYRLKKVG-LDYYNHNLDTSPKLYGDI-ISTRDYE-NRLNTLKNVRNVGINICCGG--IIGLSESRDQRAE 226 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG-~~~i~~g~et~~e~l~~i-~~~~~~~-~~~~~i~~~~~~G~~i~~~~--i~Glget~e~~~~ 226 (348)
......++.++.+.++| ++.+.+++++.++.+..+ +.+..++ +.+++++.+++.|+.+.... +-|... .+++.+
T Consensus 96 ~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~ 174 (191)
T TIGR02495 96 DTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD-EEDLAE 174 (191)
T ss_pred EeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHHHHH
Confidence 54445788899999999 699999999865656555 4445665 89999999999998655443 334432 567888
Q ss_pred HHHHHHhcC
Q psy14485 227 LIFQLANLN 235 (348)
Q Consensus 227 ~l~~l~~l~ 235 (348)
.++++.+++
T Consensus 175 ~~~~l~~~~ 183 (191)
T TIGR02495 175 IATRIKENG 183 (191)
T ss_pred HHHHhccCC
Confidence 888887664
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=120.43 Aligned_cols=202 Identities=16% Similarity=0.256 Sum_probs=147.5
Q ss_pred HHHHHHHHhhcCCCce-EEEEEEEeecCCCCCC----CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEe
Q psy14485 47 FRAQKVHRKYFDANEI-ELAVLLSIKTGGCTED----CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG 121 (348)
Q Consensus 47 ~~A~~~~~~~~~g~~v-~~~~~i~i~t~~C~~~----C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~ 121 (348)
...+.+.++|- |-- ++..-|+. .++|+.. |+||.-+.. +...+ +++|.|+++++.+++.|++.|.|+
T Consensus 167 ~~GA~vv~qHP--~yp~~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~~~--R~~e~Vv~EVkaLY~~GvrhFRlG 238 (560)
T COG1031 167 PLGAEVVKQHP--NYPEYVICEIET-YRGCPRRVSGGCSFCTEPVR---GRPEF--RPPEDVVEEVKALYRAGVRHFRLG 238 (560)
T ss_pred hccchHHHhCC--CCcceEEEEEee-ccCCcccccCCCccccCcCc---CCccc--CCHHHHHHHHHHHHHhccceeeec
Confidence 33445555443 222 44456677 9999976 999997763 22233 699999999999999999887654
Q ss_pred --------cc----CCCCCcccHHHHHHHHHHHHhc--CcE-EE---EecCCC------CHHHHHHHHHhCC--Ceeecc
Q psy14485 122 --------AA----WRELKDRDLDNIENMICEVKKI--GLE-TC---LTLGML------NENQAYRLKKVGL--DYYNHN 175 (348)
Q Consensus 122 --------gg----~~~~~~~~~~~~~~l~~~i~~~--~~~-i~---~~~g~l------~~e~l~~Lk~aG~--~~i~~g 175 (348)
++ ++ .+..+.+.+.++++.++.. ++. ++ +||+.+ +++.++.+-+.|- |...+|
T Consensus 239 RQ~difsy~~~~~g~e-~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfG 317 (560)
T COG1031 239 RQADIFSYGADDNGGE-VPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFG 317 (560)
T ss_pred cccceeeecccccCCC-CCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeee
Confidence 11 12 2345688999999999974 332 22 345543 2356677777753 778999
Q ss_pred CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-------Ce---eeEeEeeec-CCCHHHHHHHHHHHHhcCC---CCCe
Q psy14485 176 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-------IN---ICCGGIIGL-SESRDQRAELIFQLANLNP---YPES 240 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-------~~---i~~~~i~Gl-get~e~~~~~l~~l~~l~~---~~~~ 240 (348)
+|| ++.+.+.-+-.-+.++.+++++...+.| ++ ...++++|| |||.|.+.-..++|.++-+ .+..
T Consensus 318 lEsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRR 397 (560)
T COG1031 318 LESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRR 397 (560)
T ss_pred ccccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEE
Confidence 999 7888876655679999999999999865 32 367899999 9999999999999888642 3567
Q ss_pred eecccccccCCCCCCCC
Q psy14485 241 VPINNLVQIKGTPLYGS 257 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~ 257 (348)
|.+-..+++||||++..
T Consensus 398 INIRqV~~fpgT~~~~~ 414 (560)
T COG1031 398 INIRQVVVFPGTPMWER 414 (560)
T ss_pred eeeeeEeecCCCchhhh
Confidence 88889999999999864
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=118.17 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=141.5
Q ss_pred cCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHHHh---C---C--------------CCEEEEeccCCCCCc
Q psy14485 72 TGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKAKS---D---G--------------ATRFCMGAAWRELKD 129 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~~---~---G--------------~~~i~l~gg~~~~~~ 129 (348)
..+|+++|.||.-+..+... .......++++|++++..... . | .+.+.|+++|++ ..
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEP-lL 143 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEP-TL 143 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccc-cc
Confidence 44599999999865533211 112335789999998865421 1 2 345777766553 22
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHH
Q psy14485 130 RDLDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRN 204 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~ 204 (348)
.+++.++++.+++.++.+.+. .|.+ ++.++.| +++++.+.+++++ +++.++.++++ .+++.++++++.+++
T Consensus 144 --~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~ 219 (322)
T PRK13762 144 --YPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPS 219 (322)
T ss_pred --hhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 247999999999988877654 5655 6888888 7899999999999 79999999753 589999999999999
Q ss_pred cCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC--CCCCCCCCHHHHHHHHHHHHHHCC
Q psy14485 205 VGINIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP--LYGSSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 205 ~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~--l~~~~~~~~~~~~~~~a~~R~~lp 277 (348)
.|..+. ..++-|. +..+..+.++++++++ ++.+.+.+|+|..... +.....++.+++.++...++....
T Consensus 220 ~~~~~~ir~tlv~g~--Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~ 292 (322)
T PRK13762 220 KKTRTVIRITLVKGY--NMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTG 292 (322)
T ss_pred CCCCEEEEEEEECCc--CccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcC
Confidence 987654 4444454 4444447777888887 8999998888876543 233356888888888888776653
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=116.28 Aligned_cols=189 Identities=11% Similarity=0.178 Sum_probs=135.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
..||+.+|.||..+.. . ..+.++++||++++..... .|+..|.+.|+|++ ....+.+.++++.+++
T Consensus 116 qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Lln~~~v~~~l~~l~~~ 188 (356)
T PRK14455 116 QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FDNYDNVMDFLRIINDD 188 (356)
T ss_pred CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cCCHHHHHHHHHHHhcc
Confidence 6799999999987743 1 1235899999998875321 35778888775563 3457899999999986
Q ss_pred cCc-----EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeE--
Q psy14485 145 IGL-----ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICC-- 211 (348)
Q Consensus 145 ~~~-----~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~-- 211 (348)
.++ +++++...+.+ .+..+.+.++. .+.+++.+ +++.++.+.+ ..+.++++++++.+.+ .|.++..
T Consensus 189 ~g~~~s~r~itvsT~G~~~-~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey 267 (356)
T PRK14455 189 KGLAIGARHITVSTSGIAP-KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEY 267 (356)
T ss_pred cCcccCCCceEEEecCchH-hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 466 66665433333 45566676653 35578999 7999987544 5688999999998765 4555554
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
-+|=|..++.+++.+..++++.++ ..|.+.++.|.++.++ .+++.+.+.++..+++.
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky---~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDY---VRTPKEDIFAFEDTLKK 324 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 445566999999999999999885 5788888888887654 34677777777666654
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=115.68 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=144.1
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH--------HhCCCCEEEEeccCCCCCcccHHHHHHHH
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA--------KSDGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~--------~~~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
++. ..+|+.+|.||..... +.. +.++.+||+.++..+ ...+++.|+|.|-|++ ....+.+.+++
T Consensus 125 iSs-q~GCnl~C~FC~tg~~---g~~--rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Lln~d~v~~~i 196 (368)
T PRK14456 125 ISS-QAGCALRCSFCATGQM---GFR--RNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LLNTDNVFEAV 196 (368)
T ss_pred EEe-cCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--ccCHHHHHHHH
Confidence 445 7899999999986542 212 248899999886432 2356889999883353 34556788888
Q ss_pred HHHHhcC----c---EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC----CCCHHHHHHHHH-HHHHc
Q psy14485 140 CEVKKIG----L---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS----TRDYENRLNTLK-NVRNV 205 (348)
Q Consensus 140 ~~i~~~~----~---~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~----~~~~~~~~~~i~-~~~~~ 205 (348)
+.+++.+ + .++++...+.+ .++.|.++|++ ++.+++.+ +++.++.+.| ..+.++++++++ .+.+.
T Consensus 197 ~~l~~~~~~~~is~r~ItisT~Gl~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~ 275 (368)
T PRK14456 197 LTLSTRKYRFSISQRKITISTVGITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT 275 (368)
T ss_pred HHHhccccccCcCcCeeEEECCCChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhc
Confidence 8887631 2 45555433544 47999999996 89999999 7999998853 458899999997 46777
Q ss_pred CCee--eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec
Q psy14485 206 GINI--CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM 283 (348)
Q Consensus 206 G~~i--~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~ 283 (348)
|..+ ..-+|-|+.++.+++.+.+++++.+. ..+.+-+|.|.++.++. +++.+.+.+...+.+..=-++.|+-
T Consensus 276 g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~---~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~~Gi~vtvR~ 349 (368)
T PRK14456 276 GEPVTLVYMLLEGINDSPEDARKLIRFASRFF---CKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLDAGLQVTVRK 349 (368)
T ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCC---CeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHHCCCcEEeeC
Confidence 8764 45566677899999999999999884 46777778887777653 5677777776666665322334444
Q ss_pred ccc
Q psy14485 284 SAG 286 (348)
Q Consensus 284 s~g 286 (348)
+.|
T Consensus 350 ~~G 352 (368)
T PRK14456 350 SYG 352 (368)
T ss_pred CCC
Confidence 443
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-11 Score=114.31 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=141.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-I 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~ 145 (348)
|+. +.+|+.+|.||.... . +. .+.++++||++++..+.. .+++.|.|.|.|+ | ....+.+.+.++.+++ .
T Consensus 107 vSs-q~GC~~~C~FC~tg~-~--~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 107 ISS-QVGCAMGCAFCLTGT-F--RL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LANLDNVIPALQILTDPD 178 (349)
T ss_pred EEe-cCCcCCCCccCCCCC-C--CC--CCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhcHHHHHHHHHHhhccc
Confidence 455 899999999998553 2 21 235899999998877653 4789998888556 3 3467788888888875 4
Q ss_pred Cc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC---CCCCHHHHHHHHHHHHHc-CCeee--EeE
Q psy14485 146 GL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII---STRDYENRLNTLKNVRNV-GINIC--CGG 213 (348)
Q Consensus 146 ~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~---~~~~~~~~~~~i~~~~~~-G~~i~--~~~ 213 (348)
++ +++++...+.+ .+..+.+..-..+.+++.+ +++.++.+. +..+.++.+++++...+. +-++. ..+
T Consensus 179 gl~~s~r~itVsTnGl~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvL 257 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVM 257 (349)
T ss_pred ccCcCCceEEEECCCchH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 55 56665433433 3444444432345578999 799999874 456889998888776553 44554 455
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy14485 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
|-|..++.+++.+..++++.++ ..+.+-+|.|.+|. +..+|+.+.+.++..+.+..--.+.+|-+.|
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G 324 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLLDKHVTVITRSSRG 324 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 5567999999999999999985 47778888877764 3567788877777777665433344555543
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=116.29 Aligned_cols=203 Identities=18% Similarity=0.338 Sum_probs=150.6
Q ss_pred cCCCCCCCCcCCCCCCCCCC-------CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-
Q psy14485 72 TGGCTEDCGYCPQSTHYNTE-------ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK- 143 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~-------~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~- 143 (348)
-.+|..+|.||++.+..... ...|.....+++++....-. ..+++++++-- ..| ....++..+++.+.
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~i-~~p--~~~~d~~~i~~~~~~ 113 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQI-AYP--RALNDLKLILERLHI 113 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-cccccccceee-ccc--cccchhhhhhhhhhh
Confidence 48999999999988732211 01233344566665433211 12677877654 122 34456777788877
Q ss_pred hcCcEEEEe--cCCCC-HHHHHHHHHhCCCeeeccCCC-CHHHHhccCC----CCCHHHHHHHHHHHHH-cC-CeeeEeE
Q psy14485 144 KIGLETCLT--LGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS----TRDYENRLNTLKNVRN-VG-INICCGG 213 (348)
Q Consensus 144 ~~~~~i~~~--~g~l~-~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~----~~~~~~~~~~i~~~~~-~G-~~i~~~~ 213 (348)
..+.+++++ ....+ .+.+...++.|.+.+.++.+. ++++|+.+++ .|+++..++.++.+.+ .| -++.+++
T Consensus 114 ~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihl 193 (339)
T COG2516 114 RLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHL 193 (339)
T ss_pred ccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeE
Confidence 456666655 33233 899999999999999999999 7999998842 4799999999999887 46 5899999
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee
Q psy14485 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR 282 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~ 282 (348)
|+|+||++.++++++..++..+ -.+++..|.|..||.|.+..+++.+.+.++..+. .++.+..+.
T Consensus 194 iVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~-yli~~G~v~ 258 (339)
T COG2516 194 IVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVERYRKIQVAR-YLIGNGEVD 258 (339)
T ss_pred EeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHHHHHHHHHH-HHHhcCccc
Confidence 9999999999999999999997 5788899999999999999988888777765544 666664444
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=115.63 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=142.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH---H-hC--C---CCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA---K-SD--G---ATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~---~-~~--G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
..+|+.+|.||..... +. .+.++++||++++... . .. | ++.|.|.|+|++ ....+.+.++++.+
T Consensus 109 q~GC~~~C~FC~tg~~---g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--Lln~~~v~~~l~~l 181 (354)
T PRK14460 109 QVGCAMGCTFCSTGTM---GF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--LLNLDEVMRSLRTL 181 (354)
T ss_pred CCCcCCCCccCCCCCC---CC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--cCCHHHHHHHHHHH
Confidence 6799999999985532 11 2348999999998432 2 22 3 567878775563 34678888999888
Q ss_pred Hhc-Cc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHH-HHcCCee--
Q psy14485 143 KKI-GL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVGINI-- 209 (348)
Q Consensus 143 ~~~-~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~-~~~G~~i-- 209 (348)
++. ++ +++++..-+ .+.++.|.++|+..+.+++.+ +++.++++.+. .+.++.+++++.. .+.|-++
T Consensus 182 ~~~~Gl~~~~r~itvsT~G~-~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~i 260 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCGI-EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTF 260 (354)
T ss_pred hhhhccCCCCCeEEEECCCC-hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 763 54 466653323 667889999999999999999 79999998764 4788888887754 4455444
Q ss_pred eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy14485 210 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 210 ~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
..-+|-|+.++.+++.+..++++.++ ..|.+-+|+|.+|.++ .+++.+++.++..+++..=-++.+|-+.
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~~Gi~vtir~~~ 330 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWSKGITAIIRKSK 330 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 45666677999999999999999986 3688888888888875 4678887777766665532223344443
|
|
| >KOG2672|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=113.61 Aligned_cols=172 Identities=22% Similarity=0.346 Sum_probs=137.3
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhcCcE
Q psy14485 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+-+..|...|.||+.....++. -+++.|-.+.++.+.+.|+..|+|++-+. ++++...+.+.+.++.|+....+
T Consensus 116 lmGDTCTRGCRFCsVKTsR~Pp-----PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ 190 (360)
T KOG2672|consen 116 LMGDTCTRGCRFCSVKTSRNPP-----PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPE 190 (360)
T ss_pred eecCccccCcceeeeecCCCCc-----CCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcc
Confidence 3389999999999987742221 25566667777888899999999987532 34556788999999999986555
Q ss_pred EEE---ecCCC-CHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCCH
Q psy14485 149 TCL---TLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV--GINICCGGIIGLSESR 221 (348)
Q Consensus 149 i~~---~~g~l-~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~ 221 (348)
+-+ .+... +-+.++.+...|+|.+-+++||.+++-..++. ..++.+-+..++.+++. ++-..+.+|.|+|||.
T Consensus 191 ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetd 270 (360)
T KOG2672|consen 191 ILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETD 270 (360)
T ss_pred cchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCH
Confidence 532 33322 34678999999999999999998888887764 45999999999999985 4556688999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 222 DQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 222 e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
|++..++..|++.+ ++.+.+..+++
T Consensus 271 eei~~tl~dLr~~~--vdv~t~gqym~ 295 (360)
T KOG2672|consen 271 EEIKQTLKDLRAAD--VDVVTFGQYMQ 295 (360)
T ss_pred HHHHHHHHHHHHcC--CcEEecccccC
Confidence 99999999999999 89999988874
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=110.23 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=141.2
Q ss_pred EEEee-cCCCCCCCCcCCCCCCC--CCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 67 LLSIK-TGGCTEDCGYCPQSTHY--NTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~-t~~C~~~C~fC~~~~~~--~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
+|.+- |.+|+.+|.||+..... +.....| ..++|.+++..+...+. +.-+.++.|-|+ |. ....+.+++++
T Consensus 108 viqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy-~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGE-P~--lYP~l~~lVqa 183 (414)
T COG2100 108 VIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDY-VVDPEYLLEWFEKVARFKGKGLEAHLDGQGE-PL--LYPHLVDLVQA 183 (414)
T ss_pred EEEecCCccccceeEEEeccCCcccceeccce-EecHHHHHHHHHHHHhhhCCCeEEEecCCCC-Cc--cchhHHHHHHH
Confidence 34554 88999999999976532 1122345 46888888888776543 234578887665 32 23578888888
Q ss_pred HHhc-CcE---EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEe
Q psy14485 142 VKKI-GLE---TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGI 214 (348)
Q Consensus 142 i~~~-~~~---i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i 214 (348)
+++. ++. +..|.+.++++.++.|.+||+||+++++.+ +++.-+.+.. ..+.+.+++..+.+..+|+.+-..-+
T Consensus 184 lk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv 263 (414)
T COG2100 184 LKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPV 263 (414)
T ss_pred HhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeee
Confidence 8874 443 345677999999999999999999999999 7888887765 45889999999999999997654423
Q ss_pred eecCCCHHHHHHHHHHHHhcCC--CCCeeecccccccCC-CCCCCCCCCCHHHHHHHHHHH
Q psy14485 215 IGLSESRDQRAELIFQLANLNP--YPESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~--~~~~i~~~~l~P~~g-T~l~~~~~~~~~~~~~~~a~~ 272 (348)
.=.|-+++++...+.++++++. +-.-+.++.|+|++- -.-....+.+-.++..++...
T Consensus 264 ~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred ecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHH
Confidence 3226677889999999999874 223456788888752 111112345555666555544
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=113.66 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLET 149 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i 149 (348)
||+|-++|.||-..... +.++-+ ++++||+..--..+.. -+...++++|.-..++.+.+.+.+.++.++- .++.-
T Consensus 61 TN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 61 TNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred hhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheeccccccCcchHHHHHHHHHHHHhhccccCc
Confidence 89999999999876543 334443 8999999886665554 4667788877444445677777777777774 23332
Q ss_pred EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH---------------cCC-e--
Q psy14485 150 CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN---------------VGI-N-- 208 (348)
Q Consensus 150 ~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~---------------~G~-~-- 208 (348)
.++...++...-+..+++| +||+++++|. .+.-++.+.+.+++.+++..+.+++. .-+ +
T Consensus 138 YIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaG 217 (404)
T COG4277 138 YIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAPAG 217 (404)
T ss_pred EEEEEecCCCCHHHHHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccccCCC
Confidence 3332222222233445555 5999999999 79999999999999999888887775 112 1
Q ss_pred eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy14485 209 ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 209 i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
-++.+|+|. |+|.++++..-..+-.-- ....|.++.|.|.|+||+.....++.....+++..
T Consensus 218 QSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQA 280 (404)
T COG4277 218 QSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQA 280 (404)
T ss_pred CceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHHH
Confidence 357899999 999999998887776543 26788999999999999876545555555555554
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-11 Score=111.93 Aligned_cols=198 Identities=15% Similarity=0.165 Sum_probs=138.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKK---- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~---- 144 (348)
..||+.+|.||..... +.. +.++.+||++++..... .++..|.|.|-|++ ....+.+.++++.+++
T Consensus 108 q~GC~l~C~fC~tg~~---g~~--r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP--Lln~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 108 QVGCPVKCIFCATGQS---GFV--RNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP--LLNYENVIKSIKILNHKKMK 180 (343)
T ss_pred cCCCCCcCcCCCCCCC---Ccc--ccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh--hhhHHHHHHHHHHHhchhcc
Confidence 6999999999985431 111 34789999998865432 35788988883353 3456778888888864
Q ss_pred -cCc-EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeee--EeEe
Q psy14485 145 -IGL-ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC--CGGI 214 (348)
Q Consensus 145 -~~~-~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~--~~~i 214 (348)
.+. .++++..-+ .+.++.|.+.|++ ++.+++.+ +++.++.+.| ..+.+++++.++...+ .+.++. .-+|
T Consensus 181 ~~g~~~itisTnG~-~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI 259 (343)
T PRK14469 181 NIGIRRITISTVGI-PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILI 259 (343)
T ss_pred cCCCCeEEEECCCC-hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEE
Confidence 233 566654333 6788999999998 79999999 7888887653 5689999999987655 355544 4456
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy14485 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS 284 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s 284 (348)
-|...+.+++.+..++++.++ ..|.+-+|.|.++ ...+++.+++.++..+++..--++.+|.+
T Consensus 260 ~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~gi~vtvr~~ 322 (343)
T PRK14469 260 KGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKNGIEAEIRRE 322 (343)
T ss_pred CCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 677888899999999998885 4577777777654 34567777777766666553223344433
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-11 Score=110.98 Aligned_cols=200 Identities=13% Similarity=0.130 Sum_probs=138.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-C-----CCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-G-----ATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
+.+|+.+|.||..... +.. +.++++||++++...... | ++.|.|.|.|++ ....+.+.+.++.+..
T Consensus 100 q~GC~l~C~fC~tg~~---g~~--r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--lln~~~v~~~i~~l~~~ 172 (343)
T PRK14468 100 MVGCPAGCAFCATGAM---GFG--RNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--LLNYENVLKAARIMLHP 172 (343)
T ss_pred cCCCCCcCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--ccCHHHHHHHHHHhccc
Confidence 7899999999986542 212 348999999988655432 2 567889885453 3467888888887743
Q ss_pred cCc-----EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHH-HHcCCee--eE
Q psy14485 145 IGL-----ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNV-RNVGINI--CC 211 (348)
Q Consensus 145 ~~~-----~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~-~~~G~~i--~~ 211 (348)
.++ .++++.--+ ...++.|.+.|++ .+.+++.+ +++.++++.| ..+.++.+++++.. ++.+.++ ..
T Consensus 173 ~g~~l~~r~itvST~G~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~iey 251 (343)
T PRK14468 173 QALAMSPRRVTLSTVGI-PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEY 251 (343)
T ss_pred ccccccCceEEEECCCC-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 333 455553223 3577888898887 68889999 7999999875 34889999999754 4455554 45
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
-+|=|..++.+++.+..++++.+. ..+.+-++.|.++. +..+++.+.+.++..+.+..=-...+|-+.
T Consensus 252 vLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~---~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~ 319 (343)
T PRK14468 252 TMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGS---PFQSSPRAQILAFADVLERRGVPVSVRWSR 319 (343)
T ss_pred EEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 556677899999999999999884 57777778876653 345678877777666655432223445443
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-11 Score=111.91 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=140.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+.+ |.+|+.+|.||....... . .. ..+.+++.+.++.+.+ .|+..|.|+|| + |.....+.+.++++.+++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~~-~--~~-~~~~~~~~~~i~~i~~~~~i~eV~lsGG-D-PLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFPY-K--EN-PGNKKKWQKALDYIAEHPEIIEILISGG-D-PLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcCC-C--CC-CccHHHHHHHHHHHHhCCCcCEEEEECC-c-cccCCHHHHHHHHHHHHhc
Confidence 4566 999999999998654211 1 11 1225677777777664 47999999998 3 4334445688888888763
Q ss_pred ----CcEEEEe-c----CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeE
Q psy14485 146 ----GLETCLT-L----GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGG 213 (348)
Q Consensus 146 ----~~~i~~~-~----g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~ 213 (348)
.+.+++. + ..++++.++.|+++|+..+.+.... .+++ .++..++++.++++|+.+. +.+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecce
Confidence 3444432 2 2479999999999999888776554 3332 2678899999999999754 666
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCce
Q psy14485 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRI 281 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i 281 (348)
+-|...+.+++.+..+.+.+++ +....++.+.|.+|+. .-..+.++..+++...|-.+++..+
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG~~~ 322 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSGYLV 322 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCCCcc
Confidence 6677888888999999999988 7777778888888873 3357888999999999988887443
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=109.16 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---C------C--CCEEEEeccCCCCCcccHHHHHHHHH
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---D------G--ATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~------G--~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.-||+.+|.||+.+.. +. .+.++++||+.++..+.. . | ++.|.|.|-|++ ....+.+.++++
T Consensus 128 QvGC~m~C~FCatg~~---g~--~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--LlN~d~V~~~i~ 200 (373)
T PRK14459 128 QAGCGMACPFCATGQG---GL--TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LANYKRVVAAVR 200 (373)
T ss_pred cCCCCCcCCCCCCCCC---CC--CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hhhHHHHHHHHH
Confidence 7899999999985531 21 235899999999876542 1 1 566888773353 346788999999
Q ss_pred HHHh-----cCc---EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcC
Q psy14485 141 EVKK-----IGL---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVG 206 (348)
Q Consensus 141 ~i~~-----~~~---~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G 206 (348)
.+++ .++ +++++.--+. ..++.|.+.|++ ++.+++-+ +++.++.+-|. .+.++.+++++... +.|
T Consensus 201 ~l~~~~~~g~gis~r~ITvST~Gl~-~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 201 RITAPAPEGLGISARNVTVSTVGLV-PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred HHhCcccccCCccCCEEEEECcCch-hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 9986 345 6777643233 357888888886 78899999 79999988773 68899999966654 678
Q ss_pred Ceee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 207 INIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 207 ~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
..+. .-+|=|+..+.++..+..++++.+...+..|.+-+|.|.++.++ ..++.+...++..+.+.
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y---~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW---TASPPEVEREFVRRLRA 346 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 7654 55666788999999999999988842235788889999888764 34666666666665554
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-11 Score=111.19 Aligned_cols=193 Identities=12% Similarity=0.137 Sum_probs=141.8
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+.+ |+.|+..|.||....... .....++.+++.+.++.+.+ .+++.|.|+|| .|...+.+.+..+++.+++.
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~g---~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGG--DPLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKVG---DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGG--DPLLLSDDYLDWILTELRAI 184 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccCC---cccccCCHHHHHHHHHHHHhcCCCCEEEEeCC--ccccCChHHHHHHHHHHhhc
Confidence 4566 999999999998665321 12234688999998888877 48999999998 34334445666667777764
Q ss_pred -C---cEEEEe-----cCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEe
Q psy14485 146 -G---LETCLT-----LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 214 (348)
Q Consensus 146 -~---~~i~~~-----~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i 214 (348)
+ +.+..+ +..++++.++.|++++...|.+.+.+.+|+ .++..++++.++++|+.+. +.++
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 3 334444 456889999999999876665555554443 5889999999999999754 6667
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy14485 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 279 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~ 279 (348)
=|...+.+.+.+....+.+++ +.--.++..-|.+|+.-+ ..+.++-++++..+|-.++..
T Consensus 256 kGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~hF---rv~~~~g~~I~~~lr~~~sG~ 315 (417)
T TIGR03820 256 AGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSHF---RTPVGKGIEIIESLIGHTSGF 315 (417)
T ss_pred CCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCcccc---cCcHHHHHHHHHHHHHhCCCC
Confidence 788889999999999998887 444444555667776543 457788999999999888774
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=107.91 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=139.9
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
|+. +.||+.+|.||+.+.. + -.+.++.+||++++..... .++..|.|.|-|++ ....+.+.++++.++
T Consensus 103 vSs-q~GC~l~C~FC~t~~~---G--~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP--L~N~d~v~~~l~~l~ 174 (348)
T PRK14467 103 VSS-QVGCAVGCKFCATAKD---G--LIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP--LANYENVRKAVQIMT 174 (348)
T ss_pred EEc-CCCCCCcCcCCCCCCC---C--CcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh--hcCHHHHHHHHHHHc
Confidence 344 8999999999986642 2 1235899999999866543 25788888884453 457889999999997
Q ss_pred h-cCc-----EEEEec-CCCCHHHHHHHHHh----CCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcCC
Q psy14485 144 K-IGL-----ETCLTL-GMLNENQAYRLKKV----GLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVGI 207 (348)
Q Consensus 144 ~-~~~-----~i~~~~-g~l~~e~l~~Lk~a----G~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G~ 207 (348)
+ .++ +++++. |.. + .++.+... .+ .+.+++-+ +++.++++.|. ...++.+++++... +.|-
T Consensus 175 ~~~gl~~~~r~itvsT~G~~-~-~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~ 251 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGII-H-QIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR 251 (348)
T ss_pred ChhccCcCCCcEEEECCCCh-h-HHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 6 566 677764 444 2 23444432 34 35578888 79999998874 47777777776543 5676
Q ss_pred eee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy14485 208 NIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 208 ~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
++. .-+|-|+..+.++..+..+++..+. ....|.+-+|.|.++.++ ++++.+++.+...+++..--...+|-+.
T Consensus 252 ~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~gi~v~vR~~~ 327 (348)
T PRK14467 252 RIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDNGISTFVRWSK 327 (348)
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 554 5556677889999999999999874 145788888888777654 6678877777666655532233455444
Q ss_pred c
Q psy14485 286 G 286 (348)
Q Consensus 286 g 286 (348)
|
T Consensus 328 G 328 (348)
T PRK14467 328 G 328 (348)
T ss_pred C
Confidence 3
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.6e-11 Score=108.88 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=135.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
+.+ |.+|+.+|.||.-.... .. +- ..+.+++.+.+..+.+ .+++.|.|+|| + |.......+.++++.+...
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~-~~--~~-~~~~~~~~~~i~~i~~~~~i~~VvltGG-E-PL~~~d~~L~~ll~~l~~i~ 172 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP-YQ--EN-QPNKAQWKEALEYIAQHPEINEVILSGG-D-PLMAKDHRLDWLLNLLEQIP 172 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC-CC--CC-CCCHHHHHHHHHHHHhcCCCCEEEEeCc-c-cccCCchHHHHHHHHHHhCC
Confidence 446 99999999999865421 11 11 2455666665666654 48999999997 3 3223334466777666542
Q ss_pred ---CcEEE-----EecCCCCHHHHHHHHHhCCCeee-ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEe
Q psy14485 146 ---GLETC-----LTLGMLNENQAYRLKKVGLDYYN-HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 214 (348)
Q Consensus 146 ---~~~i~-----~~~g~l~~e~l~~Lk~aG~~~i~-~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i 214 (348)
.+.++ +.+..++++.++.|+++|+..+. +.++..+|+. ++..++++.++++|+.+. +.++
T Consensus 173 ~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvll 243 (321)
T TIGR03821 173 HLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLL 243 (321)
T ss_pred CCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceee
Confidence 22222 23446889999999999987764 3565544443 457789999999999764 4445
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc
Q psy14485 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR 280 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~ 280 (348)
=|...+.+++.+..+.+.+++ +....++.+.|..|+.- -..+.++..+++..+|..++...
T Consensus 244 kgiNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~~---f~v~~~~~~~i~~~l~~~~sG~~ 304 (321)
T TIGR03821 244 RGVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAAH---FDVDDERARALMAELLARLPGYL 304 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCccc---ccCCHHHHHHHHHHHHHhCCCCc
Confidence 577789999999999999998 77778888888888652 35788999999999998887743
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=106.70 Aligned_cols=188 Identities=12% Similarity=0.177 Sum_probs=133.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
..||+.+|.||+.... +. .+.++.+|+++++..... .+++.|.|.|.|++ ....+.+.++++.+++
T Consensus 112 Q~GC~l~C~fC~t~~~---g~--~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP--Lln~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 112 QVGCALGCTFCATAKG---GF--NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP--LLNLNEVVKAMEIMNDD 184 (355)
T ss_pred CCCCCCcCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch--hhCHHHHHHHHHHhhcc
Confidence 5789999999986542 11 134789999998755432 24677888875463 3467888888888875
Q ss_pred cC--c---EEEEe-cCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHH-HHHcCCeee--
Q psy14485 145 IG--L---ETCLT-LGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINIC-- 210 (348)
Q Consensus 145 ~~--~---~i~~~-~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~-~~~~G~~i~-- 210 (348)
.+ + +++++ .|.+ +.++.|.+.+++ .+.+++.+ +++.++++.+ ..+.++.+++++. +++.|.++.
T Consensus 185 ~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtie 262 (355)
T TIGR00048 185 FGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFE 262 (355)
T ss_pred cccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 33 3 56665 4544 568888888887 57788999 7899998765 3478999988875 466777654
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
..+|-|+.++.+++....++++.++ ..+.+-+|.|.++.++ .+++.+++.++....+.
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 5556677889999999999999885 3677777887776554 45677776666555544
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-10 Score=106.63 Aligned_cols=199 Identities=15% Similarity=0.183 Sum_probs=140.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC------CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
--||+.+|.||..+.. + -.+.++++||++++...... .+..|.|.|+|++ ....+.+.++++.+++.
T Consensus 117 QvGC~~~C~FCatg~~---g--~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP--L~N~d~v~~~l~~l~~~ 189 (356)
T PRK14462 117 QVGCKVGCAFCLTAKG---G--FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP--LDNLDNVSKAIKIFSEN 189 (356)
T ss_pred cccCCCCCccCCCCCC---C--CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc--ccCHHHHHHHHHHhcCc
Confidence 5699999999976542 2 12358999999998755432 1456777666563 45789999999999984
Q ss_pred -CcE-----EEEec-CCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCC---CCCHHHHHHHHH-HHHHcCCee--e
Q psy14485 146 -GLE-----TCLTL-GMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGINI--C 210 (348)
Q Consensus 146 -~~~-----i~~~~-g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~-~~~~~G~~i--~ 210 (348)
++. ++++. |.. +.++.|.+.++ ..+.+++-+ +++.++++-| ....++.+++++ .+.+.|-++ .
T Consensus 190 ~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ie 267 (356)
T PRK14462 190 DGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFE 267 (356)
T ss_pred cCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 664 46654 444 36677877755 445567888 7899988876 246688999887 445667654 4
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
.-+|-|+..+.++.....++++.++ ..|.+-+|.|.++.++ ++|+.+.+.++..+++..--.+.|+-+.
T Consensus 268 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~~gi~vtvR~~~ 336 (356)
T PRK14462 268 YLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNSKGLLCTIRESK 336 (356)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 5667788999999999999999885 5888888888887764 5678887777666665532233455443
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-10 Score=109.10 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=122.6
Q ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE--ec--CCCCHHHHHHHHHhCC
Q psy14485 97 ILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL--TL--GMLNENQAYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~--g~l~~e~l~~Lk~aG~ 169 (348)
.++++|+++++...... ....|.|+||++ |. ..+.+.++++.+++.++++++ +. +..+++.+++++++|+
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~~ggVtisGGGe-pl--~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gl 129 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKVTISGGGD-VS--CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV 129 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCEEEEECCcc-cc--cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCC
Confidence 47899999999875542 356788888854 32 347899999999998777654 34 3558999999999999
Q ss_pred CeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 170 DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+.+.+++.+ +++.++++......+.+++.++.+.+ ++.+. .-++-|+..+.+ ..++++++.+++ +..+.+.+|
T Consensus 130 d~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~ee-l~~ti~~L~~lg--~~~V~L~~y 205 (404)
T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDV-LWKTCADLESWG--AKALILMRF 205 (404)
T ss_pred CEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHH-HHHHHHHHHHCC--CCEEEEEec
Confidence 999999999 79999987665566999999999998 45543 444555544434 469999999998 888888888
Q ss_pred cccCCC-------CCC-CCCCCCHHHHHHH
Q psy14485 247 VQIKGT-------PLY-GSSILDPLEFIRT 268 (348)
Q Consensus 247 ~P~~gT-------~l~-~~~~~~~~~~~~~ 268 (348)
.+.... ++. +..+.+.+++.++
T Consensus 206 ~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~ 235 (404)
T TIGR03278 206 ANTEEQGLILGNAPIIPGIKPHTVSEFKNI 235 (404)
T ss_pred ccccccccccCCcCcccCCCCCCHHHHHHH
Confidence 864322 121 2446677777766
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=105.88 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=134.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
..||+.+|.||..... +..+ .++..|+++++....+ ..++.|.|.|-|++ ....+.+.++++.+++.
T Consensus 104 q~GC~l~C~fC~tg~~---g~~r--~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEP--llN~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 104 QAGCALGCAFCATGKL---GLDR--SLRSWEIVAQLLAVRADSERPITGVVFMGQGEP--FLNYDEVLRAAYALCDPAGA 176 (336)
T ss_pred CCCcCCCCccccCCCC---CCCC--CCCHHHHHHHHHHHHHhcCCCCCEEEEEecCcc--ccCHHHHHHHHHHHhCcccc
Confidence 7889999999997652 1122 3688999988876543 24788888883353 34567788888888752
Q ss_pred ---CcEEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHHcCCee--eEeEee
Q psy14485 146 ---GLETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRNVGINI--CCGGII 215 (348)
Q Consensus 146 ---~~~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~~G~~i--~~~~i~ 215 (348)
+..++++...+.+ .++.|.+.|. +.+.+++.+ +++.++.+.|. .+.++.+++++...+.+.++ ...+|-
T Consensus 177 ~~~~~~ItVsTnG~~p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~ 255 (336)
T PRK14470 177 RIDGRRISISTAGVVP-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMIS 255 (336)
T ss_pred ccCCCceEEEecCChH-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEe
Confidence 4466665433333 4556666665 789999999 79999998764 58999999999988877654 455666
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy14485 216 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 216 Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
|...+.++..+..++++.+. ..+.+-+|.|.++ ...+++.+++.++..+.+
T Consensus 256 GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 256 GVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDALA 306 (336)
T ss_pred cccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHHH
Confidence 78888999999999998774 4666667777554 456778887777776663
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-10 Score=103.89 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=139.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-Cc--
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL-- 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~-- 147 (348)
.-||+.+|.||..... +..+ .++.+||+.++..+.. .++..|.|.|-|++. .+.+.+.+.++.+++. ++
T Consensus 110 QvGC~~~C~FC~Tg~~---g~~r--nLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~N~d~vi~al~~l~~~~g~~~ 182 (345)
T PRK14466 110 QVGCKMNCLFCMTGKQ---GFTG--NLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--DNLDEVLKALEILTAPYGYGW 182 (345)
T ss_pred CCCCCCCCCCCCCCCC---CCCC--CCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--ccHHHHHHHHHHHhhccccCc
Confidence 4599999999995542 2222 3899999999887643 258889888833532 4667778877777652 44
Q ss_pred ---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHH-cCCee--eEeEeeec
Q psy14485 148 ---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRN-VGINI--CCGGIIGL 217 (348)
Q Consensus 148 ---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~-~G~~i--~~~~i~Gl 217 (348)
.+++++-.+.+..-+.+.+.. ..+.+++-+ +++.++.+.|. .+.++.+++++...+ .|-.+ ...+|=|.
T Consensus 183 s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv 261 (345)
T PRK14466 183 SPKRITVSTVGLKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL 261 (345)
T ss_pred CCceEEEEcCCCchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC
Confidence 666664334433333333333 466788888 79999988874 478999999887544 44444 45566678
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
..+.++..+..++++.+. ..|.+.+|.|.||.+ ..+++.+.+.++....+..--.+.+|-+.|
T Consensus 262 ND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~---~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G 324 (345)
T PRK14466 262 NDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVD---LEGSDMARMEAFRDYLTSHGVFTTIRASRG 324 (345)
T ss_pred CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCC---CcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 899999999999998874 688999999998864 456778877777777665433445554443
|
|
| >KOG4355|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=109.92 Aligned_cols=206 Identities=16% Similarity=0.219 Sum_probs=142.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHH-HHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLD-NIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~-~~~~l~~~i~~~ 145 (348)
+|.| ..+|-..|.||-... .+.....| +++++++.++...+.|+.+|++.+-++..+..+.. .+..++.++.+.
T Consensus 190 Ii~i-ntgclgaCtyckTkh-arg~l~sy---~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~ 264 (547)
T KOG4355|consen 190 IISI-NTGCLGACTYCKTKH-ARGLLASY---PKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEV 264 (547)
T ss_pred EEEe-ccccccccccccccc-cccccccC---CHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHh
Confidence 6778 789999999997532 22233344 69999999999999999999998765443333222 233444444332
Q ss_pred CcE-EEEecCCC-CHHHHHHHHHh-------CCCeee-ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q psy14485 146 GLE-TCLTLGML-NENQAYRLKKV-------GLDYYN-HNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 212 (348)
Q Consensus 146 ~~~-i~~~~g~l-~~e~l~~Lk~a-------G~~~i~-~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~~ 212 (348)
-.+ ..+..|.. .+-.++-|.++ .+-.+. +.+|| ++.++..+.+.....+....+..+.+ -|+.+-++
T Consensus 265 iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATD 344 (547)
T KOG4355|consen 265 IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATD 344 (547)
T ss_pred cchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeee
Confidence 111 22233322 22223333332 333333 35899 79999999987766677777777777 58999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHH----HHHHHHHHHHCCCC
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEF----IRTIAVARITMPTS 279 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~----~~~~a~~R~~lp~~ 279 (348)
+|.|+ +||.||+.++++.+++.. ..++.++.|.|.||||-......+..+. ..+..++|.+-|..
T Consensus 345 iIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYt 414 (547)
T KOG4355|consen 345 IICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYT 414 (547)
T ss_pred eeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999 999999999999999998 8899999999999999887766555444 44555666666653
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-10 Score=108.63 Aligned_cols=172 Identities=12% Similarity=0.162 Sum_probs=117.9
Q ss_pred cCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--
Q psy14485 72 TGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIG-- 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~-- 146 (348)
|..|+.+|.||........ ....+..++.+.+...++.+.+. +...|.|.|| + |...+.+.+.++++.+++.+
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GG-E-Pll~~~~~~~~~~~~~~~~~~~ 89 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGG-E-PTLAGLEFFEELMELQRKHNYK 89 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECC-c-cccCChHHHHHHHHHHHHhccC
Confidence 5899999999987642211 11122246777666666655543 3456888887 4 32333456667777776643
Q ss_pred -c----EEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 147 -L----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 147 -~----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+ .+.+|.-.++++.++.|++.|+ .|.+++++.++.++..++ ..+++.++++++.+++.|+++.+.+.+.
T Consensus 90 ~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~- 167 (370)
T PRK13758 90 NLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVT- 167 (370)
T ss_pred CCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEec-
Confidence 3 2333444788999999999997 899999997677777763 3589999999999999998766655554
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeccc-cccc
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINN-LVQI 249 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~-l~P~ 249 (348)
..+.+++.+.++++.+++ +..+.+.+ +.|.
T Consensus 168 ~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 168 SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 345677788888888888 77766543 3443
|
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-10 Score=100.53 Aligned_cols=194 Identities=19% Similarity=0.237 Sum_probs=137.0
Q ss_pred cCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEE
Q psy14485 72 TGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.||+.+|.||..+..+.. ........+++++...+ ....+...|.++|| + | ....+++.++++..++.|+.+.
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGG-E-P-~~q~e~~~~~~~~ake~Gl~~~ 116 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGG-E-P-TLQAEFALDLLRAAKERGLHVA 116 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECC-c-c-hhhHHHHHHHHHHHHHCCCcEE
Confidence 6999999999997765431 11111223344443322 22336888999988 3 3 3578999999999999999887
Q ss_pred E-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCee--eEeEeeecCCCHHHHHH
Q psy14485 151 L-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINI--CCGGIIGLSESRDQRAE 226 (348)
Q Consensus 151 ~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~~i~Glget~e~~~~ 226 (348)
+ +.|..+++.++.|.+. +|.+.+.+-. +++.|+.+... +.+.+++.++.+.+.|..+ ..-++-|...+.+++.+
T Consensus 117 l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~-~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~ 194 (260)
T COG1180 117 LDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA-DNEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRE 194 (260)
T ss_pred EEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCC-CcHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHHHHH
Confidence 6 5789999999999988 8999999999 78888888744 3499999999999999865 44555566778899999
Q ss_pred HHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy14485 227 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 227 ~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
.++++.++.. ..-+.+.+|+|. -.+...++...+...+....++..
T Consensus 195 i~~~i~~~~~-~~p~~~l~fhp~--~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 195 LAEFIADLGP-EIPIHLLRFHPD--YKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHhcCC-cccEEEeccccC--ccccccCCCcHHHHHHhHhhhHHH
Confidence 9999998752 344555666543 333334444444555555666554
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-10 Score=102.67 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCc
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~ 147 (348)
-.||+.+|.||..... +..+ .++++||++++...... ++..|.|.|-|++ ....+.+.+.++.+++ .++
T Consensus 108 qvGC~~~C~FC~tg~~---g~~r--nlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--lln~~~v~~~i~~l~~~~~i 180 (345)
T PRK14457 108 QVGCPMACDFCATGKG---GLKR--SLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LLNIDEVLAAIRCLNQDLGI 180 (345)
T ss_pred CCCCCCcCCcCCCCCC---CCcc--ccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--ccCHHHHHHHHHHHhcccCC
Confidence 4599999999986542 2112 37999999998776542 5788888884453 3467888888888876 355
Q ss_pred ---EEEEecCCCCHHHHHHHHHhCC------C-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHH-HHHcCCee--e
Q psy14485 148 ---ETCLTLGMLNENQAYRLKKVGL------D-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINI--C 210 (348)
Q Consensus 148 ---~i~~~~g~l~~e~l~~Lk~aG~------~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~-~~~~G~~i--~ 210 (348)
.++++.--+ .+.++.|.+.++ + .+.+++-+ +++.++++.| ..+.++.+++++. +.+.|-++ .
T Consensus 181 ~~r~itvST~G~-~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ie 259 (345)
T PRK14457 181 GQRRITVSTVGV-PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFE 259 (345)
T ss_pred ccCceEEECCCc-hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 666654222 234777777762 3 47788888 7999998866 3467888877755 66777654 4
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
.-+|-|+..+.++..+..++++.++ ..|.+-+|+|.++.++ .+++.+++.++..+++..=-...|+-+.
T Consensus 260 y~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~Gi~vtvR~~~ 328 (345)
T PRK14457 260 YILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQRGVAVSVRASR 328 (345)
T ss_pred EEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 6667788999999999999999985 3788888888877654 5678877777666665432223344443
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=104.44 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=133.6
Q ss_pred EEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 63 ELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-ATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 63 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.....+++ |+.|+.+|.||....... .. ..++.++..+....+.+.| ...+.++|| + |... ..+.++++.
T Consensus 18 p~~~~~~~-t~~Cnl~C~~C~~~~~~~---~~-~el~~~~~~~~~~~~~~~g~~~~v~~~gG-E-Pll~--~d~~ei~~~ 88 (347)
T COG0535 18 PLVVGIEL-TNRCNLACKHCYAEAGKK---LP-GELSTEEDLRVIDELAELGEIPVVIFTGG-E-PLLR--PDLLEIVEY 88 (347)
T ss_pred CcEEEEee-ccccCCcCcccccccCCC---Cc-cccCHHHHHHHHHHHHHcCCeeEEEEeCC-C-cccc--ccHHHHHHH
Confidence 34445677 999999999998776421 12 2478888887777888888 777778777 3 3222 678888888
Q ss_pred HHhc-CcEEEEec-C-CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeee
Q psy14485 142 VKKI-GLETCLTL-G-MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIG 216 (348)
Q Consensus 142 i~~~-~~~i~~~~-g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~G 216 (348)
+++. ++.+++++ | .++++.++.++++|++.+.+++++ .++.++.++. ...++..+++++.+++.|+.+.....+
T Consensus 89 ~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v- 167 (347)
T COG0535 89 ARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV- 167 (347)
T ss_pred HhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-
Confidence 8864 66666543 3 478899999999999999999999 6788777765 568999999999999999973332222
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 217 LSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
...+.+++.+.++.+.+++ ...+.+..++|..
T Consensus 168 ~~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 168 TKINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred ecCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 1677888889999999998 7888888888764
|
|
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=102.06 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=135.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEE-EEeccCCCCCcccHHHHHHHHHHHHh-cC
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRF-CMGAAWRELKDRDLDNIENMICEVKK-IG 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~-~~ 146 (348)
..||+.+|.||+.... + -.+.++++||++++...... .+..+ +++|| ++ ....+.+.++++.+++ .+
T Consensus 108 qvGC~~~C~FC~tg~~---G--~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggG-EP--Lln~d~v~~~l~~l~~~~g 179 (342)
T PRK14454 108 QVGCRMGCKFCASTIG---G--MVRNLTAGEMLDQILAAQNDIGERISNIVLMGSG-EP--LDNYENVMKFLKIVNSPYG 179 (342)
T ss_pred CCCCCCcCCcCCCCCC---C--CcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCc-hh--hcCHHHHHHHHHHHhcccc
Confidence 7899999999986532 2 12348999999998766542 24554 45555 53 4577899999999997 56
Q ss_pred c-----EEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHH-HHHcCCeee--EeE
Q psy14485 147 L-----ETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKN-VRNVGINIC--CGG 213 (348)
Q Consensus 147 ~-----~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~-~~~~G~~i~--~~~ 213 (348)
+ +++++.-.+.+. +..+.+.+. ..+.+++-+ +++.++.+.+. ...++.+++++. ..+.|.++. .-+
T Consensus 180 i~~~~r~itvsTsG~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~L 258 (342)
T PRK14454 180 LNIGQRHITLSTCGIVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYAL 258 (342)
T ss_pred cCcCCCceEEECcCChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEe
Confidence 6 677764333333 566666542 236778888 78888888763 366777766654 556676654 556
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy14485 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS 284 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s 284 (348)
|-|+..+.++..+..++++.+. ..|.+-||.|.++.. ..+++.+++.++..+++..--+..++-+
T Consensus 259 I~gvNDs~eda~~La~llk~l~---~~VnLiPyn~~~~~~---~~~ps~e~l~~f~~~l~~~gi~v~iR~~ 323 (342)
T PRK14454 259 VKGVNDSKEDAKELGKLLKGML---CHVNLIPVNEVKENG---FKKSSKEKIKKFKNILKKNGIETTIRRE 323 (342)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC---ceEEEEecCCCCCCC---CCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 6688899999999999998873 578888888877664 3567887777766666653333344433
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-09 Score=105.28 Aligned_cols=179 Identities=11% Similarity=0.174 Sum_probs=122.3
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhC-CCCE--EEEeccCCCCCcccHHHHHHHHH
Q psy14485 65 AVLLSIKTGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD-GATR--FCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
...+...+..|+.+|.||........ .......++.+.+.+.++++.+. +... |.++|| + |...+...+.++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-E-PlL~~~~~~~~~~~ 91 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-E-TLMRPLSFYKKALE 91 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-c-cCCCcHHHHHHHHH
Confidence 33445424799999999997542110 00112248898888888887653 5555 455776 4 33333344555554
Q ss_pred HHHh----cCcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeee
Q psy14485 141 EVKK----IGLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 141 ~i~~----~~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
.+++ .++.+. +|.-.++++.++.|+++|+ .|.+++++.+++++..++ ..+++.+++.++.+++.|+.++
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 4332 344443 3444889999999999997 899999997677776653 2489999999999999998765
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+...+. .++.++..+.++++.+++ +..+.+.+++|.
T Consensus 171 i~~vv~-~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~~ 206 (412)
T PRK13745 171 AMAVVN-DFNADYPLDFYHFFKELD--CHYIQFAPIVER 206 (412)
T ss_pred EEEEEc-CCccccHHHHHHHHHHcC--CCeEEEEeccCc
Confidence 433321 566777888888999998 889998888873
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=98.52 Aligned_cols=166 Identities=20% Similarity=0.258 Sum_probs=123.8
Q ss_pred CCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC------CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC-
Q psy14485 74 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKKIG- 146 (348)
Q Consensus 74 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~- 146 (348)
.|.++|.||...........+-.....+.|.++.+.+... .++.+.|++.|+ |+.. .++-++++.+++.+
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GE-PTLy--~~L~elI~~~k~~g~ 109 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGE-PTLY--PNLGELIEEIKKRGK 109 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCC-cccc--cCHHHHHHHHHhcCC
Confidence 8999999999855322211122236788999888887655 467788888765 3322 57888888898876
Q ss_pred cE-EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCC---CHHHHHHHHHHHHHc--CCe-eeEeEeeecC
Q psy14485 147 LE-TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR---DYENRLNTLKNVRNV--GIN-ICCGGIIGLS 218 (348)
Q Consensus 147 ~~-i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~---~~~~~~~~i~~~~~~--G~~-i~~~~i~Glg 218 (348)
.. +-+++|.+ ++.++.|. -.|.+++.+++ +++.|++|++++ +++.++++++.+++. |-. +.++++=|+.
T Consensus 110 ~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N 186 (296)
T COG0731 110 KTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGIN 186 (296)
T ss_pred ceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecccc
Confidence 44 34577777 88888888 46999999999 799999999875 799999999999995 433 3455555666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
.+.+++.+..+++.... |+.|.+..++
T Consensus 187 ~~~e~~~~~a~ll~~~~--Pd~velk~~~ 213 (296)
T COG0731 187 DDEEELEEYAELLERIN--PDFVELKTYM 213 (296)
T ss_pred CChHHHHHHHHHHHhcC--CCeEEEecCc
Confidence 66677888888888898 8988877655
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-09 Score=97.37 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=129.5
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC----------CCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----------GATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----------G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
--||+.+|.||..+.. +.. +.++.+||++++...... +++.|++.|+|++ ....+.+.+.++.
T Consensus 110 QvGC~~~C~FC~t~~~---g~~--rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP--L~N~d~v~~al~~ 182 (372)
T PRK11194 110 QVGCALECKFCSTAQQ---GFN--RNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP--LLNLNNVVPAMEI 182 (372)
T ss_pred CCCCCCcCCCCCCCCC---CCC--CcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc--ccCHHHHHHHHHH
Confidence 4899999999986642 222 348999999998654421 2667766665563 3567888888888
Q ss_pred HHh-cC--c---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHH-HHcC----
Q psy14485 142 VKK-IG--L---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVG---- 206 (348)
Q Consensus 142 i~~-~~--~---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~-~~~G---- 206 (348)
+.+ .+ + +++++.--+.+ .++.|.+..--.+.+++-+ +++.++.+.|. ...++.+++++.. .+.|
T Consensus 183 l~~~~g~~i~~r~itVsTsG~~~-~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 183 MLDDFGFGLSKRRVTLSTSGVVP-ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred HhhhhccCcCCCeEEEECCCCch-HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 875 33 3 67776433333 3556665542245556777 78999988763 3567777765443 4453
Q ss_pred -CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 207 -INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 207 -~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
+.+..-+|-|+..+.++..+..++++.+. ..|.+-+|+|.+|.++ ++++.+.+.++..+++.
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 44567778888999999999999999885 4888888888887654 56777776666656554
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-08 Score=94.62 Aligned_cols=201 Identities=15% Similarity=0.132 Sum_probs=135.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
-.||+.+|.||..... +.. +.++..||+.++..+.+ ..+..|.|-|-|++ ....+.+.+.++.+++.
T Consensus 112 QvGC~m~C~FC~tg~~---g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~N~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 112 QIGCTLNCKFCATAKL---EFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MHNYFNVIRAASILHDPDAF 184 (342)
T ss_pred cCCCCCCCCCCcCCCC---Ccc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hhhHHHHHHHHHHHhChhhh
Confidence 5699999999987552 222 34789999998876654 24677777662353 35667888888877763
Q ss_pred ---CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH-HcCCeee--EeEee
Q psy14485 146 ---GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR-NVGINIC--CGGII 215 (348)
Q Consensus 146 ---~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~-~~G~~i~--~~~i~ 215 (348)
...++++.--+.+...+...+..-..+.+++.+ +++.+..+.| ..+.++.+++++... +.|-.+. .-+|-
T Consensus 185 ~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~ 264 (342)
T PRK14465 185 NLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIP 264 (342)
T ss_pred cCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEEC
Confidence 226777643333444333333433478888999 7999998865 467899999998554 6676655 44556
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy14485 216 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 216 Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
|+..+.|++.+..++++.++ ..+.+-+|.|. + .+.++|+.+.+.++..+.+..--.+.+|-+.|
T Consensus 265 GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G 328 (342)
T PRK14465 265 GVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEPAGVPILNRRSPG 328 (342)
T ss_pred CccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 77889999999999999885 45666666662 3 45677888888777666554322234554443
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-09 Score=94.55 Aligned_cols=202 Identities=15% Similarity=0.169 Sum_probs=146.0
Q ss_pred eecCCCC----CCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-C--CCE--EE-Ee-ccCCCCCcccHHHHHHH
Q psy14485 70 IKTGGCT----EDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-G--ATR--FC-MG-AAWRELKDRDLDNIENM 138 (348)
Q Consensus 70 i~t~~C~----~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G--~~~--i~-l~-gg~~~~~~~~~~~~~~l 138 (348)
+.|.||. ..|.+|++..... .. ..+.+++.++..++.+. . ..+ |. |+ |...++...+.+.-..+
T Consensus 52 LrT~GC~w~~~~gC~MCgY~~d~~----~~-~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~I 126 (358)
T COG1244 52 LRTRGCRWYREGGCYMCGYPADSA----GE-PVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYI 126 (358)
T ss_pred EecCCcceeccCCcceeccccccC----CC-CCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHH
Confidence 3489997 3599999876421 22 26788888888776542 1 222 32 33 33334444566777788
Q ss_pred HHHHHhcC----cEEEEecCCCCHHHHHHHHHh--CC-CeeeccCCC-CHHHH-hccCCCCCHHHHHHHHHHHHHcCCee
Q psy14485 139 ICEVKKIG----LETCLTLGMLNENQAYRLKKV--GL-DYYNHNLDT-SPKLY-GDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 139 ~~~i~~~~----~~i~~~~g~l~~e~l~~Lk~a--G~-~~i~~g~et-~~e~l-~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
++.+.+.+ +-+...+..+++|.++.+.+. |. ..|.+|+|| ++++. ..|+++.++++++++++.++++|+.+
T Consensus 127 l~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~v 206 (358)
T COG1244 127 LERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKV 206 (358)
T ss_pred HHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCce
Confidence 88888752 334556889999999999998 65 458899999 68877 46899999999999999999999999
Q ss_pred eEeEeeec-C----CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy14485 210 CCGGIIGL-S----ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 210 ~~~~i~Gl-g----et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
.+.+++=+ - |..+|...++. ...+..+.+++++-...+||-++. +.||=.+-...++..++...|.
T Consensus 207 ktYlllKP~FlSE~eAI~D~i~Si~---~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 207 KTYLLLKPPFLSEKEAIEDVISSIV---AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred eEEEEecccccChHHHHHHHHHHHH---HhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99988865 2 23344555554 433348999999999999997642 3566677788888888888885
Q ss_pred C
Q psy14485 279 S 279 (348)
Q Consensus 279 ~ 279 (348)
.
T Consensus 284 ~ 284 (358)
T COG1244 284 L 284 (358)
T ss_pred C
Confidence 3
|
|
| >KOG2492|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-10 Score=101.78 Aligned_cols=201 Identities=13% Similarity=0.173 Sum_probs=150.4
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---------------
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD--------------- 131 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~--------------- 131 (348)
.++| -+||.+-|+||-.+-. .+ +-+.++.+-|+++++.+.+.|+++|.+.|..-+.+...
T Consensus 223 FvSi-MRGCdNMCtyCiVpft--rG--reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVSI-MRGCDNMCTYCIVPFT--RG--RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHHH-HhccccccceEEEecc--CC--cccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4556 7899999999997643 22 22347899999999999999999998876421110000
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEE-----ecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCH
Q psy14485 132 -----------LDNIENMICEVKKIGLETCL-----TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDY 192 (348)
Q Consensus 132 -----------~~~~~~l~~~i~~~~~~i~~-----~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~ 192 (348)
--.+..+++.+.....++.. +|...++|.++.+++.- ...+.+..|| +.++++.++|+.+.
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysr 377 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSR 377 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCCh
Confidence 01577788877765443332 36688899999998863 3455667899 79999999999999
Q ss_pred HHHHHHHHHHHH--cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC----C--CCCHH
Q psy14485 193 ENRLNTLKNVRN--VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS----S--ILDPL 263 (348)
Q Consensus 193 ~~~~~~i~~~~~--~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~----~--~~~~~ 263 (348)
+..++-....+. -|...++++|-|+ |||.+|-..++-.+++.+ -+.+..+.+.-..+|..+.. . ..-.+
T Consensus 378 eayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~ay~r~~ddvpeeVKnr 455 (552)
T KOG2492|consen 378 EAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRAYHRLKDDVPEEVKNR 455 (552)
T ss_pred HhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchhhhhhcccccHHHHHH
Confidence 999999999998 4778899999999 999999999999999998 78888888877778876532 1 12334
Q ss_pred HHHHHHHHHHH
Q psy14485 264 EFIRTIAVARI 274 (348)
Q Consensus 264 ~~~~~~a~~R~ 274 (348)
....++.++|.
T Consensus 456 rl~~Li~~Fre 466 (552)
T KOG2492|consen 456 RLFELITFFRE 466 (552)
T ss_pred HHHHHHHHHHH
Confidence 45566666664
|
|
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=97.53 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=128.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCC-CC---CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYN-TE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~-~~---~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
.+.+ |+.||.+|.||..+..-. .+ ....+..+.+++..++....+.| +.++|| .| ...+++..++++.+
T Consensus 31 VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGG--dP-l~~ieR~~~~ir~L 103 (353)
T COG2108 31 VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGG--DP-LLEIERTVEYIRLL 103 (353)
T ss_pred EEEE-ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCC--Ch-HHHHHHHHHHHHHH
Confidence 3556 999999999999887321 11 12344577888888877665544 456777 33 45788999999999
Q ss_pred Hhc---CcEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 143 KKI---GLETCLT--LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 143 ~~~---~~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
|+. ++++++- .-..+++.++.|.+||+|-|-+.+.. -.....+.+++.++.|++.|+.+..- |-.+
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~--------~~~~~~e~~i~~l~~A~~~g~dvG~E-iPai 174 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPR--------PGSKSSEKYIENLKIAKKYGMDVGVE-IPAI 174 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCC--------ccccccHHHHHHHHHHHHhCccceee-cCCC
Confidence 974 4666653 34789999999999999988754420 01246788999999999999998776 3344
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-------CCC---C---CCCCCHHHHHHHHHHHHH
Q psy14485 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-------PLY---G---SSILDPLEFIRTIAVARI 274 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-------~l~---~---~~~~~~~~~~~~~a~~R~ 274 (348)
-.-.+.+.+.+.++.+.+ .+.+.++.|--.... -+. + ....|.+..++.+..+-.
T Consensus 175 pg~e~~i~e~~~~~~~~~--~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~~~ 242 (353)
T COG2108 175 PGEEEAILEFAKALDENG--LDFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWAEE 242 (353)
T ss_pred cchHHHHHHHHHHHHhcc--cceeeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHHhc
Confidence 222456778888888887 677777766432211 011 1 133566666777766653
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=93.32 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=133.3
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC--CCEEEEeccCCCCCcccHHHHHHHHHHHHhc---C
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG--ATRFCMGAAWRELKDRDLDNIENMICEVKKI---G 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~ 146 (348)
.-||+.+|.||..... +. .+.++.+||++++..+...| ++.|.|.|-|++. .. ..+.++++.+++. +
T Consensus 107 qvGC~~~C~FC~tg~~---g~--~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPL--ln-~~v~~~i~~l~~~~~~~ 178 (347)
T PRK14453 107 QCGCGFGCRFCATGSI---GL--KRNLTADEITDQLLYFYLNGHRLDSISFMGMGEAL--AN-PELFDALKILTDPNLFG 178 (347)
T ss_pred CCCcCCCCCCCCCCCC---CC--cccCCHHHHHHHHHHHHhcCCCcceEEEeecCCcc--CC-HHHHHHHHHHhcccccC
Confidence 6789999999987642 21 23489999999988766554 8888888833533 33 3577887777752 2
Q ss_pred cE---EEEe-cCCCCHHHHHHHHHh-CCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH-HcCCe--eeEeEe
Q psy14485 147 LE---TCLT-LGMLNENQAYRLKKV-GLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR-NVGIN--ICCGGI 214 (348)
Q Consensus 147 ~~---i~~~-~g~l~~e~l~~Lk~a-G~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~-~~G~~--i~~~~i 214 (348)
+. ++++ .|..+ .++.|.+. .-..+.+++-+ +++..+++.+ ....++.+++++... +.|.+ +..-+|
T Consensus 179 ~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI 256 (347)
T PRK14453 179 LSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIML 256 (347)
T ss_pred CCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeE
Confidence 22 5555 45443 23333333 12335557788 6777776655 346777777765543 46654 456777
Q ss_pred eecCCCHHHHHHHHHHHHhcCC--CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy14485 215 IGLSESRDQRAELIFQLANLNP--YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~--~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
-|+..+.+++.+.+++++.+.. .+..|.+-+|+|.++.+ .+..+++.+++.++..+.+..=-...+|-+.|
T Consensus 257 ~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 257 EGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-FKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-ccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 7888999999999999998731 14678888888887643 34567888888777777765422234554443
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-09 Score=95.38 Aligned_cols=171 Identities=11% Similarity=0.149 Sum_probs=122.2
Q ss_pred cCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+.+++.+.+..... .+...|.|+|| + | ....+.+.++++.+++.++.+.+ +.|.+..+.+..+.+ .++.+.
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGG-E-P-ll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~-~~d~~~ 181 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGG-E-P-LLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP-YVDLFL 181 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCc-c-h-hchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh-hCCEEE
Confidence 467888877765432 23457889887 4 3 23556678999999988876655 456777777777776 478888
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE--eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~--~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+++.+ +++.++.+.+ .+++..++.++.+.+.|..+.+ .++.|+..+.+++.+.++++.+++..+..+.+.+|.|.+
T Consensus 182 isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g 260 (295)
T TIGR02494 182 FDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLG 260 (295)
T ss_pred EeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCCchh
Confidence 88998 6888888764 4788999999999999976544 445566778899999999999986223577788888865
Q ss_pred CCCC---------CCCCCCCHHHHHHHHHHHH
Q psy14485 251 GTPL---------YGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 251 gT~l---------~~~~~~~~~~~~~~~a~~R 273 (348)
..++ .+.+.++.+++.++...++
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 292 (295)
T TIGR02494 261 ENKYRQLGREYPDSEIPDPAEEQLLELKEIFE 292 (295)
T ss_pred HHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH
Confidence 4332 3445678777777655443
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-08 Score=92.64 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=134.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKKI----G 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~ 146 (348)
..+|+.+|.||..... +..+ .++.+||++++..+.+. .++.|.|.|-|+ | ....+.+.+.++.+.+. .
T Consensus 103 QvGC~~~C~FC~tg~~---g~~R--nLs~~EI~~Qv~~~~~~~~i~nIVfmGmGE-P-l~N~d~vl~ai~~l~~~~~i~~ 175 (344)
T PRK14464 103 QVGCAVGCVFCMTGRS---GLLR--QLGSAEIVAQVVLARRRRAVKKVVFMGMGE-P-AHNLDNVLEAIDLLGTEGGIGH 175 (344)
T ss_pred cCCcCCCCCcCcCCCC---CCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeccCc-c-cCCHHHHHHHHHHhhchhcCCC
Confidence 7899999999986542 2222 47999999998877653 588998888445 3 24567777777776542 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcCCeee--EeEeeecC
Q psy14485 147 LETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVGINIC--CGGIIGLS 218 (348)
Q Consensus 147 ~~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G~~i~--~~~i~Glg 218 (348)
..++++.--+ .+..+.|.+.++. .+.+++.+ +++.++.+.|. .+.++.+++++... +.|-.+. ..++=|..
T Consensus 176 r~itiST~G~-~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVN 254 (344)
T PRK14464 176 KNLVFSTVGD-PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVN 254 (344)
T ss_pred ceEEEecccC-chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCC
Confidence 3444443212 2335666665443 45568888 68999988773 48888888887654 4676554 34444778
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy14485 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
.+.++..+..++++.+. -.+.+-+|.|.+|+++. .++.+...++....+..=-...+|-+.|
T Consensus 255 Ds~e~a~~L~~~l~~~~---~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~~gi~~tiR~~~G 316 (344)
T PRK14464 255 DSDEEMDGIVRLLKGKY---AVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHRRGVLTKVRNSAG 316 (344)
T ss_pred CCHHHHHHHHHHHhccc---cccceecCCccCCCCcc---CCCHHHHHHHHHHHHHCCceEEEECCCC
Confidence 99999999999988774 57788888888888653 4666766676666655322233454433
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=94.50 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=128.0
Q ss_pred cCC-CCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCE--EEEeccCCCCCcccHHHHHHHHHHHHh--c
Q psy14485 72 TGG-CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATR--FCMGAAWRELKDRDLDNIENMICEVKK--I 145 (348)
Q Consensus 72 t~~-C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~~~~~~~~~~~l~~~i~~--~ 145 (348)
|.. |+.+|.||........ ++.++.+.+.+.++.+.+. +... |.+.|| + |.....+.+..+.....+ .
T Consensus 14 t~~~CNL~C~YC~~~~~~~~----~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GG-E-PlL~~~~f~~~~~~l~~k~~~ 87 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESL----QRIMSDETLEEYVRQYIAASNGDKVTFTWQGG-E-PLLAGLDFYRKAVALQQKYAN 87 (378)
T ss_pred ccCccCCCCCeeCcccCCCC----CCCCCHHHHHHHHHHHHhhCCCCeeEEEEECC-c-cccchHHHHHHHHHHHHHHhc
Confidence 566 9999999998874321 1247887777777776654 4455 777888 4 322223333333332222 1
Q ss_pred CcEEE----EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 146 GLETC----LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ~~~i~----~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+..++ +|.-+++++.++.|++.|+ .|.++++..+++.++.++ ..+++.+++.++.+++.++.+++... .
T Consensus 88 ~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v--v 164 (378)
T COG0641 88 GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV--V 164 (378)
T ss_pred CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE--E
Confidence 44433 4556899999999999999 899999988888887764 24899999999999999888766645 5
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC--CCCCCCCCHHHHHHHHH
Q psy14485 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP--LYGSSILDPLEFIRTIA 270 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~--l~~~~~~~~~~~~~~~a 270 (348)
.++.++..+.++++.+.+ ...+.|.++++..++- +... ..+++++.+.+.
T Consensus 165 ~~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~-~~~~~~~~~fl~ 217 (378)
T COG0641 165 NRQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEF-SVTAEEYGQFLI 217 (378)
T ss_pred chhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCcccccc-ccCHHHHHHHHH
Confidence 788888888999998888 7788886666554432 2322 234555544443
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-08 Score=89.52 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=128.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----------------CCCCEEEEeccCCCCCcccHHH
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----------------DGATRFCMGAAWRELKDRDLDN 134 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----------------~G~~~i~l~gg~~~~~~~~~~~ 134 (348)
--||+.+|.||+.... +. .+-++..||++++..+.+ ..++.|+|-|-|++ ..+.+.
T Consensus 114 QvGC~mgC~FCaTG~~---G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP--L~Nydn 186 (371)
T PRK14461 114 QAGCGMGCVFCATGTL---GL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP--FANYDR 186 (371)
T ss_pred cCCccCCCCcccCCCC---Cc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc--hhhHHH
Confidence 4699999999986653 22 235899999999876542 12566666554453 346677
Q ss_pred HHHHHHHHHhc-Cc-----EEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH
Q psy14485 135 IENMICEVKKI-GL-----ETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR 203 (348)
Q Consensus 135 ~~~l~~~i~~~-~~-----~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~ 203 (348)
+.+.++.+.+. ++ .+++|.--+.+ .++.|.+-+. -.+.+++-+ ++++.+.+-| ..+.++.+++++...
T Consensus 187 V~~ai~il~d~~g~~is~R~ITVST~Givp-~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~ 265 (371)
T PRK14461 187 WWQAVERLHDPQGFNLGARSMTVSTVGLVK-GIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYI 265 (371)
T ss_pred HHHHHHHhcCccccCcCCCceEEEeecchh-HHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 77777777652 22 45665433333 3555665543 356677888 6889888776 458899999987764
Q ss_pred -HcCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCC---CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 204 -NVGINIC--CGGIIGLSESRDQRAELIFQLANLNPY---PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 204 -~~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~---~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
+.|-.|. -.+|=|...+.++..+..+.++.+... .-+|.+-+|.|.+|+++. +++.+.+.+...+.+.
T Consensus 266 ~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L~~ 339 (371)
T PRK14461 266 AKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRILTD 339 (371)
T ss_pred HhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHHHH
Confidence 4565554 445557789999999999999877210 247888899999998764 4677766666666554
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=82.70 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=133.4
Q ss_pred cCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++++++++++..-.. .+-..|.|+|| + | ....+.+.++++.+++.++++++ +.|..+.+.++.+... +|.+.
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGG-E-P-llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~D~~l 94 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGG-E-V-LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-CDEVL 94 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCc-h-H-HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-cCEEE
Confidence 799999998876433 24467999988 3 3 34678899999999999998877 4678888888888876 89999
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe--eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN--ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~--i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+.+-+ +++.++.+. +.+.+.+++.++.+.+.|.. +...+|-|+..+.+++....+++.+++ ++.+.+.+|+|..
T Consensus 95 ~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpyh~~g 171 (213)
T PRK10076 95 FDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPFHQYG 171 (213)
T ss_pred EeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecCCccc
Confidence 99988 788888875 46789999999999999874 567788888888899999999999997 7778888888752
Q ss_pred C---------CCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 251 G---------TPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 251 g---------T~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
- -++.+.++++.+.+.++..+++.
T Consensus 172 ~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 172 EPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred hhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 2 23445567777777676666654
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-07 Score=81.99 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=88.4
Q ss_pred cCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.+|+.+|.||.....+... ...+..++.+++++.++.....|+..|.|+|| + |.. .+.+.++++.+++.++.+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGG-E-Pll--~~~l~~li~~l~~~g~~v~ 104 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGG-N-PAL--QKPLGELIDLGKAKGYRFA 104 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCC-c-hhh--hHhHHHHHHHHHHCCCCEE
Confidence 78999999999976532211 11233478999999988776667889999998 4 322 2478899999998888877
Q ss_pred Ee-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee
Q psy14485 151 LT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG 216 (348)
Q Consensus 151 ~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G 216 (348)
+. +|.+..+. +++ ++.+.+++.. +. .....++...++++.+++ |..+..-++++
T Consensus 105 leTNGtl~~~~---l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 105 LETQGSVWQDW---FRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EECCCCCcHHH---Hhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 64 56665542 443 4577777765 22 112357777888888887 66666666666
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-07 Score=82.72 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=153.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|+..|-++++...+.....+...++++.+++.. ..+.+-. .-..+.++.++++|++.+.+
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~-~~~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV-RNREKGIERALEAGVDEVRI 93 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc-cCchhhHHHHHhCCcCEEEE
Confidence 36999999999999999999999987732111111234566677776643 4443211 11288899999999999999
Q ss_pred cCCCCHHHHh--ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC--CCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 175 NLDTSPKLYG--DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 175 g~et~~e~l~--~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg--et~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
.+.+++ .+. ..+++ ..++...++++.+++.|+.+...++.-.. .+++++.+.++.+.+++ ++.+.+.-
T Consensus 94 ~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l~D--- 167 (265)
T cd03174 94 FDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISLKD--- 167 (265)
T ss_pred EEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEech---
Confidence 887764 333 23343 37889999999999999999888766666 99999999999999998 77776332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCCCCCchH
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 322 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~ 322 (348)
| ....+|+++.+++...|..+|+. .+...-|+ +..-....|+.+||+.+ +.|-- -.+.+.+.++
T Consensus 168 ---t----~G~~~P~~v~~li~~l~~~~~~~--~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~~e~ 237 (265)
T cd03174 168 ---T----VGLATPEEVAELVKALREALPDV--PLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAATED 237 (265)
T ss_pred ---h----cCCcCHHHHHHHHHHHHHhCCCC--eEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCccHHH
Confidence 2 23468899999999999988873 33221222 22345667899999887 22110 0123344578
Q ss_pred HHHHHHHcCCC
Q psy14485 323 DSKLLKKLGIN 333 (348)
Q Consensus 323 ~~~~i~~~G~~ 333 (348)
....++..|+.
T Consensus 238 ~~~~l~~~~~~ 248 (265)
T cd03174 238 LVAALEGLGID 248 (265)
T ss_pred HHHHHHhcCCC
Confidence 88899999865
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-07 Score=85.42 Aligned_cols=173 Identities=15% Similarity=0.212 Sum_probs=111.8
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHH-HHHHHHHH-HhCCC--CEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIES-VITAAQKA-KSDGA--TRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~ee-i~~~~~~~-~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.++. -.||.+.|.||......... ..++. ..+++ +.+.++.- .+.+. ..|.+++. ++|+ .+.+.-..+.+.
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~-v~vk~n~~e~l~~el~~~~~k~~~i~is~~-TDpy-qp~E~~~~ltR~ 107 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTK-VNVKENLLELLERELRKPGPKRTVIAISSV-TDPY-QPIEKEYRLTRK 107 (297)
T ss_pred ecCC-cCCCCCCCceeecccccccccCCCce-eeechhHHHHHHHHHhhccCCceEEEEecC-CCCC-CcchHHHHHHHH
Confidence 3455 78999999999977532211 11222 33444 66666543 33333 34555544 4553 343443344433
Q ss_pred H----HhcCcEEEEecCC-C---CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeE
Q psy14485 142 V----KKIGLETCLTLGM-L---NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 142 i----~~~~~~i~~~~g~-l---~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
+ ...+..+.+.+-. + +-+.+..++.-+..+|.+.+-| ++++-+.+-|. -+.++++++++.+.++|+++..
T Consensus 108 ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v 187 (297)
T COG1533 108 ILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL 187 (297)
T ss_pred HHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3 3456666655442 2 4566777777787889999988 56788888775 4899999999999999998876
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+--=+ +.+++++.+.+..+.+.+ +..+....
T Consensus 188 ~v~PIiP~~~d~e~e~~l~~~~~ag--~~~v~~~~ 220 (297)
T COG1533 188 FVAPIIPGLNDEELERILEAAAEAG--ARVVVYGT 220 (297)
T ss_pred EEecccCCCChHHHHHHHHHHHHcC--CCeeEeee
Confidence 543334 667799999999888887 66654433
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-07 Score=76.01 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=103.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~ 146 (348)
....+-||+..|.||...........+...++|+|+.+.+.++ ++.|.+.|.++|+ + | ....+.++++++.+-...
T Consensus 44 aTAD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~-E-P-~l~~EHvlevIeLl~~~t 120 (228)
T COG5014 44 ATADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGA-E-P-ILGREHVLEVIELLVNNT 120 (228)
T ss_pred eeccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCC-C-c-cccHHHHHHHHHhccCce
Confidence 3344789999999998543111122344468999999887665 5679999999988 3 3 345688999998876544
Q ss_pred cEEEEecCCC--CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 147 LETCLTLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 147 ~~i~~~~g~l--~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+-+.+|.-.+ ++..++.|...--..|-+++.. +++-|.+|.. +.-+..-+++++.+++.|+.+..-+++++
T Consensus 121 FvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f 196 (228)
T COG5014 121 FVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDF 196 (228)
T ss_pred EEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhcc
Confidence 4444443333 7777888776433345556677 7899988863 22467778999999999999988889988
|
|
| >KOG2535|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-07 Score=80.82 Aligned_cols=131 Identities=11% Similarity=0.127 Sum_probs=99.1
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHH-HH
Q psy14485 148 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRD-QR 224 (348)
Q Consensus 148 ~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e-~~ 224 (348)
.+...+.--....+..|...|++++.+|+|| -+++-+.-+++|+...+.+++..++++|+++.+++|-.+ .-..| |+
T Consensus 226 TIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDi 305 (554)
T KOG2535|consen 226 TIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDI 305 (554)
T ss_pred EeecCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhH
Confidence 3334455445567889999999999999999 588888899999999999999999999999999999887 43332 33
Q ss_pred HHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy14485 225 AELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
....+++..-.-.+|.+.+++-....||-+++ ...-++....+++|..-.+.|.
T Consensus 306 eqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 306 EQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 33333333221147888899988899998874 3567788888887766656665
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-06 Score=77.75 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=132.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
++-. |.+|+..|.||--+...... .. .++.+++...+.++.+. -+.+|.|+|| +|.......+..+++++++.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~~~--~~-~~~~~~~~~al~YIa~hPeI~eVllSGG--DPL~ls~~~L~~ll~~L~~I 187 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVGQD--NQ-GFNKEEWDKALDYIAAHPEIREVLLSGG--DPLSLSDKKLEWLLKRLRAI 187 (369)
T ss_pred EEEe-cCcccceeeecccccccccc--cc-cCCHHHHHHHHHHHHcCchhheEEecCC--CccccCHHHHHHHHHHHhcC
Confidence 4455 99999999999866543222 11 14788888888887765 4889999998 35456778888999888874
Q ss_pred ----CcEEE-----EecCCCCHHHHHHHHHhCCCeeeccC--CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--Ee
Q psy14485 146 ----GLETC-----LTLGMLNENQAYRLKKVGLDYYNHNL--DTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CG 212 (348)
Q Consensus 146 ----~~~i~-----~~~g~l~~e~l~~Lk~aG~~~i~~g~--et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~ 212 (348)
.+.++ +.|.-++++..+.|++.+. .+.+.. .+..| -..+..++++.++++|+.+. +-
T Consensus 188 pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~-~v~~~tH~NHp~E---------it~e~~~A~~~L~~aGv~l~NQsV 257 (369)
T COG1509 188 PHVKIIRIGTRLPVVLPQRITDELCEILGKSRK-PVWLVTHFNHPNE---------ITPEAREACAKLRDAGVPLLNQSV 257 (369)
T ss_pred CceeEEEeecccceechhhccHHHHHHHhccCc-eEEEEcccCChhh---------cCHHHHHHHHHHHHcCceeecchh
Confidence 23333 2466778888888888653 333321 11111 12467789999999999764 55
Q ss_pred EeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy14485 213 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 279 (348)
Q Consensus 213 ~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~ 279 (348)
++=|...+++-+.+.+..+-..+ +.--.++..-+.+|+.-+ ..+.++..+++...|-.++..
T Consensus 258 LLrGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~hf---r~~i~~~~~i~~~lr~~~SG~ 319 (369)
T COG1509 258 LLRGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAAHF---RVPIAEGLQIVEELRGRTSGY 319 (369)
T ss_pred eecccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCccce---eccHHHHHHHHHHHHHhCCCc
Confidence 66688999999999988888887 333334444455666532 467889999999999877663
|
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-06 Score=78.09 Aligned_cols=173 Identities=15% Similarity=0.187 Sum_probs=114.6
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CC------CCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DG------ATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G------~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
--||+..|.||+.... + -.+-++..||++++..+.+ .| +..|+|-|=|++ ..+.+.+...++.+..
T Consensus 108 QvGC~~~C~FCaTg~~---G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP--l~N~dnV~~a~~i~~~ 180 (349)
T COG0820 108 QVGCPVGCTFCATGQG---G--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP--LLNLDNVVKALEIIND 180 (349)
T ss_pred CCCcCCCCCeeccccc---c--ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch--hhhHHHHHHHHHhhcC
Confidence 4689999999997653 2 2235899999999887653 23 344555443352 4577888888888875
Q ss_pred -cCc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeee--E
Q psy14485 145 -IGL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC--C 211 (348)
Q Consensus 145 -~~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~--~ 211 (348)
.|+ .+++++.-+.+...+...+.+=-.+.+++-+ +++..+.+-| ..+.++.+++++.-.+ .|..|+ -
T Consensus 181 ~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY 260 (349)
T COG0820 181 DEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEY 260 (349)
T ss_pred cccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEe
Confidence 232 3566665555554444433333457778888 6788777665 4478888888887654 455554 3
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.++=|.....++-.+.++.+..+ +.+|.+-||.|.||+.+
T Consensus 261 ~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y 300 (349)
T COG0820 261 VLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDY 300 (349)
T ss_pred eecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCc
Confidence 34445555577766666666666 45888999999999884
|
|
| >KOG2876|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-08 Score=83.49 Aligned_cols=190 Identities=19% Similarity=0.330 Sum_probs=134.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~ 146 (348)
+++ |..|+.+|.||-.+...... +.-++++..+++..+......|+..+-+.||. |+- ...+.+++..+.+. +
T Consensus 15 isl-te~cnlrc~ycMpsegv~l~-pk~~~lav~eilrl~~~F~~qgv~knrLtgge--ptI--r~di~~i~~g~~~l~g 88 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGVPLK-PKRKLLAVSEILRLAGLFAPQGVDKNRLTGGE--PLI--RQDIVPIVAGLSSLPG 88 (323)
T ss_pred hhh-hhccccccceechhcCCcCc-cchhhcchhhhHHhhhhhhHhhhhhhhhcCCC--Ccc--cccccchhhhhhcccc
Confidence 455 89999999999876532111 22345789999999999999999999999883 322 14556666666552 2
Q ss_pred c---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC---eeeEeEeeecCC
Q psy14485 147 L---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI---NICCGGIIGLSE 219 (348)
Q Consensus 147 ~---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~---~i~~~~i~Glge 219 (348)
+ .++ +.|.+....+-.|+++|++.++++++| .+.-+..+.+...+..++..++.+.+.|. ++++-++=|+.+
T Consensus 89 Lks~~IT-tng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~ 167 (323)
T KOG2876|consen 89 LKSIGIT-TNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNE 167 (323)
T ss_pred hhhhcee-ccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCC
Confidence 2 232 456777788899999999999999999 78888888888899999999999999886 356666666622
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHH
Q psy14485 220 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 269 (348)
Q Consensus 220 t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~ 269 (348)
+++.+....- +.. +--+.+-.|+|.-|.........+..+.++++
T Consensus 168 --~ev~Dfv~~t-r~~--p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~ 212 (323)
T KOG2876|consen 168 --DEVFDFVLLT-RMR--PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLI 212 (323)
T ss_pred --Ccccceeeec-CCC--CcceEEEEecccCCCcccccccccHHHHHHHH
Confidence 2233333222 232 56677788899888877665556555544443
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=68.57 Aligned_cols=210 Identities=15% Similarity=0.142 Sum_probs=145.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc------CC---CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAA------WR---ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg------~~---~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
++.+++.+.++.+.+.|+..|-++-| .. .+...+.+++.++.+.++...+...+.+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 78999999999999999999866411 00 1222356666666666554334444567777788999999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.+ ..+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 101 vd~iri~~~~~-----------e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i----- 162 (333)
T TIGR03217 101 ARTVRVATHCT-----------EADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI----- 162 (333)
T ss_pred CCEEEEEeccc-----------hHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE-----
Confidence 99988654211 234577899999999999988888877889999999999999988 666432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccc--hhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMG--ETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~--~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
..| ....+|+++.+++...|..++. .+++.-.-| +++ --....++.+||+.+ +. |. .+.+.+.
T Consensus 163 -~DT----~G~~~P~~v~~~v~~l~~~l~~-~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~---~aGN~~~ 233 (333)
T TIGR03217 163 -VDS----AGAMLPDDVRDRVRALKAVLKP-ETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA---GAGNAPL 233 (333)
T ss_pred -ccC----CCCCCHHHHHHHHHHHHHhCCC-CceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc---cccCccH
Confidence 222 2346788999999999988863 122221112 233 234566899999987 11 11 1333445
Q ss_pred hHHHHHHHHcCCCc
Q psy14485 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
+.....+++.|+.+
T Consensus 234 E~lv~~l~~~g~~t 247 (333)
T TIGR03217 234 EVFVAVLDRLGWNT 247 (333)
T ss_pred HHHHHHHHhcCCCC
Confidence 77888899999874
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-07 Score=73.40 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=53.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHhcCc--E
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKKIGL--E 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~~~~--~ 148 (348)
+++|+.+|.||..+..+... ....++.+.+.+.++.+.+.++..|.|.|| + |.. ...+.+.++++.+++.+. .
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~~~~~i~l~GG-E-Pll~~~~~~l~~i~~~~k~~~~~~~ 87 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFK--RGKELSEEIIEEIIEELKNYGIKGIVLTGG-E-PLLHENYDELLEILKYIKEKFPKKI 87 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT---SEEC-HHHHHHHCHHHCCCCCCEEEEECS-T-GGGHHSHHHHHHHHHHHHHTT-SEE
T ss_pred cCcccccCcCcCCcccCccc--ccccccchhhhhhhhHHhcCCceEEEEcCC-C-eeeeccHhHHHHHHHHHHHhCCCCe
Confidence 67899999999876543222 222356666666667776788999999987 4 321 257899999999998755 3
Q ss_pred EEEecCCCCHHHHHHHHHh
Q psy14485 149 TCLTLGMLNENQAYRLKKV 167 (348)
Q Consensus 149 i~~~~g~l~~e~l~~Lk~a 167 (348)
+..+.|....+....+...
T Consensus 88 ~~~tng~~~~~~~~~~~~~ 106 (139)
T PF13353_consen 88 IILTNGYTLDELLDELIEE 106 (139)
T ss_dssp EEEETT--HHHHHHHHHHH
T ss_pred EEEECCCchhHHHhHHHHh
Confidence 4456676666555433333
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-05 Score=69.34 Aligned_cols=215 Identities=15% Similarity=0.211 Sum_probs=140.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHH-HHHHHHhCCCeeeccC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQ-AYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~-l~~Lk~aG~~~i~~g~ 176 (348)
++.++.++.++.+.+.|+..|-++.. .....+.+.+.++.+.+....+...+.+..-+-+. ++.++++|++.+.+..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFP--FASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHC--TSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEccc--ccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecC
Confidence 68999999999999999999988632 12334566677666666653333333443333333 6667789999999887
Q ss_pred CCCHHHHh-ccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 177 DTSPKLYG-DIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 177 et~~e~l~-~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
..++...+ .++. ....+...++++.+++.|+.+..+.+.....+++++.+..+.+.+++ ++.+.+. .|
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l~------Dt- 159 (237)
T PF00682_consen 89 SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYLA------DT- 159 (237)
T ss_dssp ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEEE------ET-
T ss_pred cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEee------Cc-
Confidence 77654443 3332 12466777889999999999987777766678899999999999998 7776432 22
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCcceee---e--CCeeccCCCCCchHHHH
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTKTNDDSK 325 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~~---~--~~~~~~~~g~~~~~~~~ 325 (348)
....+|.++.+++...|..+|+..|.+ ..|| ++ .-....++.+||+.+= . |+ .+.+.+.++...
T Consensus 160 ---~G~~~P~~v~~lv~~~~~~~~~~~l~~--H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~---~~Gn~~le~lv~ 231 (237)
T PF00682_consen 160 ---VGIMTPEDVAELVRALREALPDIPLGF--HAHNDLGLAVANALAALEAGADRIDGTLGGLGE---RAGNAPLEELVA 231 (237)
T ss_dssp ---TS-S-HHHHHHHHHHHHHHSTTSEEEE--EEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS---TTSB-BHHHHHH
T ss_pred ---cCCcCHHHHHHHHHHHHHhccCCeEEE--EecCCccchhHHHHHHHHcCCCEEEccCccCCC---CCCCccHHHHHH
Confidence 234578899999999999999833332 1232 22 3345668999999982 1 11 123334578888
Q ss_pred HHHHcC
Q psy14485 326 LLKKLG 331 (348)
Q Consensus 326 ~i~~~G 331 (348)
.++.+|
T Consensus 232 ~L~~~g 237 (237)
T PF00682_consen 232 ALERMG 237 (237)
T ss_dssp HHHHT-
T ss_pred HHhhcC
Confidence 888776
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00025 Score=66.54 Aligned_cols=209 Identities=15% Similarity=0.142 Sum_probs=140.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccC------C--C-CCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAW------R--E-LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~------~--~-~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
++.+++++.++.+.+.|+..|-++-|. . . +...+.+.+..+.+.++...+...+.+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 789999999999999999998664110 0 1 111234444444444332233333456766788899999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.+ ..+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 102 vd~iri~~~~~-----------e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i----- 163 (337)
T PRK08195 102 VRVVRVATHCT-----------EADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV----- 163 (337)
T ss_pred CCEEEEEEecc-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe-----
Confidence 99887654111 234678899999999999998888877778999999999999998 766432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceecccccc-ccc--hhhHHHHHHhCcceee---e--CCeeccCCCCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRK-EMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~-~l~--~~~~~~~l~~GAn~~~---~--~~~~~~~~g~~ 319 (348)
..| .....|+++.+++...|..++ +..+.+- -| +++ .-....++.+||+.+= . |. .+.+.+
T Consensus 164 -~DT----~G~~~P~~v~~~v~~l~~~l~~~i~ig~H--~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~---~aGN~~ 233 (337)
T PRK08195 164 -VDS----AGALLPEDVRDRVRALRAALKPDTQVGFH--GHNNLGLGVANSLAAVEAGATRIDGSLAGLGA---GAGNTP 233 (337)
T ss_pred -CCC----CCCCCHHHHHHHHHHHHHhcCCCCeEEEE--eCCCcchHHHHHHHHHHhCCCEEEecChhhcc---cccCcc
Confidence 222 234678899999999998884 4333221 12 232 2345668999999871 1 11 233344
Q ss_pred chHHHHHHHHcCCCc
Q psy14485 320 TNDDSKLLKKLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~~~G~~p 334 (348)
.++....+.+.|+..
T Consensus 234 tE~lv~~L~~~g~~t 248 (337)
T PRK08195 234 LEVLVAVLDRMGWET 248 (337)
T ss_pred HHHHHHHHHhcCCCC
Confidence 577788888888863
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=66.54 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=67.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL 151 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 151 (348)
..+|+.+|.||..+..+... ....++.+++.+.++.... .+..|.|+|| + ...+.+.++++.+++.++.+.+
T Consensus 22 l~GCnlrC~~C~n~~~~~~~--~g~~lt~eel~~~I~~~~~-~~~gVt~SGG-E----l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESWHLS--EGTKLTPEYLTKTLDKYRS-LISCVLFLGG-E----WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred eCCCCCCCCCCCChHHcCCC--CCcCCCHHHHHHHHHHhCC-CCCEEEEech-h----cCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999987654321 1124789999998876542 3678999998 4 3557899999999998888877
Q ss_pred ecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 152 TLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
..|...++..+.+.+. +|.+..|.
T Consensus 94 ~Tg~~~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 94 YTGLEPKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred ECCCCCHHHHHHHHHh-CCEEEECh
Confidence 7675555555455433 56666543
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-05 Score=67.95 Aligned_cols=191 Identities=12% Similarity=0.067 Sum_probs=122.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-
Q psy14485 73 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL- 151 (348)
Q Consensus 73 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~- 151 (348)
.+|+++|.||.....+..+. .. ..+++++.+.+....+.|++.|.++||. |+ ..+.++++.++.+... +++-.
T Consensus 126 sgCnfrCVfCQNwdISq~~~-g~-~v~~e~La~i~~~~~~~GakNvN~Vgg~--Pt-p~lp~Ile~l~~~~~~-iPvvwN 199 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGI-GK-EVTPEDLAEIILELRRHGAKNVNFVGGD--PT-PHLPFILEALRYASEN-IPVVWN 199 (335)
T ss_pred cCcceEEEEecCccccccCC-Ce-EecHHHHHHHHHHHHHhcCcceeecCCC--CC-CchHHHHHHHHHHhcC-CCEEEe
Confidence 69999999999665432222 22 4789999999999999999999999983 33 2567888888887765 44433
Q ss_pred ecCCCCHHHHHHHHHhCCCeeecc-CCC-CHHHHhccCCCC-CHHHHHHHHHHHHHc--CCeeeEeEeeecCCCHHHHHH
Q psy14485 152 TLGMLNENQAYRLKKVGLDYYNHN-LDT-SPKLYGDIISTR-DYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAE 226 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g-~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~e~~~~ 226 (348)
+.+-.+.|.++.|. |+--|.++ +-= +++--.+..+.. -++-+-+.+..+.+. |+-|..-+|-|+-|. --..
T Consensus 200 SnmY~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlec--CTkp 275 (335)
T COG1313 200 SNMYMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLEC--CTKP 275 (335)
T ss_pred cCCccCHHHHHHhh--ccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhh--ccHH
Confidence 46688999999887 55455553 444 455555554433 455566777777664 466666667777221 0234
Q ss_pred HHHHHHhcCCCCCeeec---ccccccCCC-CCCC-CCCCCHHHHHHHHHHHHHH
Q psy14485 227 LIFQLANLNPYPESVPI---NNLVQIKGT-PLYG-SSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 227 ~l~~l~~l~~~~~~i~~---~~l~P~~gT-~l~~-~~~~~~~~~~~~~a~~R~~ 275 (348)
.++++.+.- +..+.+ ..+.|.--. .+.+ ...++.+|+.+.+..++-+
T Consensus 276 I~~wiae~~--g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 276 ILRWIAENL--GNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred HHHHHHHhC--CCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 556677664 334333 345554211 1111 2457888998888888754
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.001 Score=60.40 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=137.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc-----C-C---CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAA-----W-R---ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg-----~-~---~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
.+.++.++.++.+.+.|+..+-++.. . . .+...+.+.+..+.+......+...+.++....+.++...++|
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g 98 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLG 98 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcC
Confidence 78999999999999999999866511 0 0 1111223333333333222222223345556678899999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.++ .....+.++.+++.|+.+...++-...-+++.+.+.++.+.+.+ ++.+.+
T Consensus 99 ~~~iri~~~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l----- 160 (263)
T cd07943 99 VDVVRVATHCTE-----------ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV----- 160 (263)
T ss_pred CCEEEEEechhh-----------HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 999876543331 23678899999999999888876555678899999999999998 776532
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.| ....+|+++.+++...|..++. +.+...-|| ++ .-....++.+||+.+ +. |+ .+.+...
T Consensus 161 -~DT----~G~~~P~~v~~lv~~l~~~~~~--~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~---~aGN~~~ 230 (263)
T cd07943 161 -TDS----AGAMLPDDVRERVRALREALDP--TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA---GAGNTPL 230 (263)
T ss_pred -cCC----CCCcCHHHHHHHHHHHHHhCCC--ceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC---CcCCccH
Confidence 333 2356788999999999988775 233221232 22 234456889999988 11 22 1334456
Q ss_pred hHHHHHHHHcCCCc
Q psy14485 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
++....++..|+.+
T Consensus 231 E~lv~~L~~~g~~~ 244 (263)
T cd07943 231 EVLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHHhcCCCC
Confidence 78888888888864
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00061 Score=61.66 Aligned_cols=213 Identities=14% Similarity=0.136 Sum_probs=143.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++- |...+.+ .+.++.+.+. +..+. .......+.++...++|++.+.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~----p~~~~~~--~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI----PAMGEEE--REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----CCCCHHH--HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCEEEE
Confidence 37899999999999999999987742 2111111 2445555543 33332 22335678889999999999998
Q ss_pred cCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++. ..+.++.. ...+...++++.+++.|+.++.+.+.+...+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l------~D 160 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF------AD 160 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe------CC
Confidence 8766643 34455432 2456667899999999999888877766678999999999999887 666432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
| ....+|+++.+++...|..+| . ++...-|| +..-....++.+||+.+ +. |+ .+.+.+.++.
T Consensus 161 T----~G~~~P~~v~~lv~~l~~~~~-~--~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~---~aGN~~tE~l 230 (259)
T cd07939 161 T----VGILDPFTTYELIRRLRAATD-L--PLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE---RAGNAALEEV 230 (259)
T ss_pred C----CCCCCHHHHHHHHHHHHHhcC-C--eEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc---cccCcCHHHH
Confidence 3 235677889999998888776 2 22221232 22334566899999987 22 22 2334456788
Q ss_pred HHHHHHc-CCCc
Q psy14485 324 SKLLKKL-GINT 334 (348)
Q Consensus 324 ~~~i~~~-G~~p 334 (348)
..+++.. |+..
T Consensus 231 v~~l~~~~g~~~ 242 (259)
T cd07939 231 VMALKHLYGRDT 242 (259)
T ss_pred HHHHHHhcCCCC
Confidence 8888887 8873
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0014 Score=59.52 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=138.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC-------CcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL-------KDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-------~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
++.++..+.++.+.+.|+..|-++-..... ...+.+.+..+.+..+ ...+...+.++..+.+.++...+.|+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCc
Confidence 789999999999999999998665210000 0113455555555443 23344445566667888999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.+.+.. +....+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 97 ~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l------ 157 (266)
T cd07944 97 DMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI------ 157 (266)
T ss_pred CEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE------
Confidence 9887654 224788999999999999999999988888888999999999999887 776532
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.| ....+|+++.+++...|..++. ..+.+- -|+ +..-....++.+||+.+ +. |+ .+.+.+.
T Consensus 158 ~DT----~G~~~P~~v~~lv~~l~~~~~~~~~i~~H--~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~---~aGN~~~ 228 (266)
T cd07944 158 VDS----FGSMYPEDIKRIISLLRSNLDKDIKLGFH--AHNNLQLALANTLEAIELGVEIIDATVYGMGR---GAGNLPT 228 (266)
T ss_pred ecC----CCCCCHHHHHHHHHHHHHhcCCCceEEEE--eCCCccHHHHHHHHHHHcCCCEEEEecccCCC---CcCcHHH
Confidence 223 2356888999999999988774 333221 122 22334566899999887 11 11 1223334
Q ss_pred hHHHHHHHHc
Q psy14485 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++....++..
T Consensus 229 E~~v~~l~~~ 238 (266)
T cd07944 229 ELLLDYLNNK 238 (266)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00079 Score=61.37 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=142.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC----cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELK----DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~----~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.++.++-++.++.+.+.|++.|-++.. .+|. ..+.+ ++++.+.. .+..+.+-. ...+.++...++|++.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~~---~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSF-VSPKWVPQMADAE---EVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDE 89 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCC-CCcccccccCCHH---HHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCE
Confidence 378999999999999999999988643 1221 12333 34444443 244443322 4677899999999999
Q ss_pred eeccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC-----C-CHHHHHHHHHHHHhcCCCCCeee
Q psy14485 172 YNHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS-----E-SRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 172 i~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg-----e-t~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.+.+-+++.+ ...+++. ...+...+.++.+++.|+.+..++++-++ . +.+.+.+.++.+.+++ ++.|.
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~ 167 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEIS 167 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 99887776543 3345443 35677788899999999988777665442 2 5677888888888887 66543
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeC---Ceec
Q psy14485 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYG---DKLL 313 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~---~~~~ 313 (348)
+ +.| ....+|.++.+++...|..+|+..+.+- -|| +..-....++.+||+.+ +.| .-+.
T Consensus 168 l------~DT----~G~~~P~~v~~lv~~l~~~~~~~~i~~H--~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa 235 (274)
T cd07938 168 L------GDT----IGVATPAQVRRLLEAVLERFPDEKLALH--FHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFA 235 (274)
T ss_pred E------CCC----CCccCHHHHHHHHHHHHHHCCCCeEEEE--ECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCC
Confidence 2 223 2346788999999999888886433321 122 22334566899999988 221 1110
Q ss_pred --cCCCCCchHHHHHHHHcCCCc
Q psy14485 314 --TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 --~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+...++...+++..|+.+
T Consensus 236 ~eraGN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 236 PGATGNVATEDLVYMLEGMGIET 258 (274)
T ss_pred CCccCCcCHHHHHHHHHhcCCCC
Confidence 122344578888899988874
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.8e-05 Score=70.68 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=138.0
Q ss_pred CCCCCC---CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCC-----EEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 73 GGCTED---CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGAT-----RFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 73 ~~C~~~---C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~-----~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
..|... |.||....... .. ...++..+.++... +.|+. .+...+++ .++ ...++.+..+..+.
T Consensus 35 ~~c~~~~~~C~~cy~~v~~~---~~-~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~-d~~--c~p~le~~~~r~~~ 105 (414)
T COG1625 35 KDCIPYRFGCDDCYLSVNEL---DT-GFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNG-DTF--CYPDLEPRGRRARL 105 (414)
T ss_pred CcCCCccccccceeeEEecc---cC-CCCCHhHhhccccc--ccccccccccceeecCCC-Ccc--cCcchhhhhhHHHh
Confidence 445555 88888665311 11 23566666665432 22322 23333332 222 33466777777766
Q ss_pred cC----cEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 145 IG----LETCLT--LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 145 ~~----~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
.+ +.+.-. .+....+..+.+.++|++-+++++.| .+++.+++-+.+..++.++.+++..+.++.+.+.+++=.
T Consensus 106 ~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~P 185 (414)
T COG1625 106 YYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLCP 185 (414)
T ss_pred hcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEEcC
Confidence 42 333322 34556677888999999999999999 799999998899999999999999999999988877766
Q ss_pred CCC-HHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCc-eec
Q psy14485 218 SES-RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG--SSILDPLEFIRTIAVARITMPTSR-IRM 283 (348)
Q Consensus 218 get-~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~--~~~~~~~~~~~~~a~~R~~lp~~~-i~~ 283 (348)
|-+ -+++.++++.|.+++ +..+.++.+.|..-|.+.. .++++++++..+-.+.|.+..... +++
T Consensus 186 GvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V 253 (414)
T COG1625 186 GVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRV 253 (414)
T ss_pred CcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Confidence 666 799999999999998 7888877777876665543 256777888777777777654433 544
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0013 Score=60.30 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=142.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELK-DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-+++. .+|. ......-.+.++.+.+ .+..+..-. ...+.++...++|++.+.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf-~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASF-VSPKWVPQMADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCC-cCcccccccccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEEEE
Confidence 378999999999999999999877532 1221 0111112455555543 234443222 3678889999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeec---CC---CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGL---SE---SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Gl---ge---t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+-+++.+. +++++. ...+...++++.+++.|+.+..++.+.+ .+ +++.+.+..+.+.+.+ ++.|.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 174 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL-- 174 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe--
Confidence 877765433 344432 2445577889999999998877666544 22 6788888899999988 776442
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eecc--
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLLT-- 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~~-- 314 (348)
+.|- ...+|.++.+++...|..+|+..+.+- -|| +..-....++.+||+.+ +. |+ -+..
T Consensus 175 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H--~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~ 244 (287)
T PRK05692 175 ----GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGH--FHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGA 244 (287)
T ss_pred ----cccc----CccCHHHHHHHHHHHHHhCCCCeEEEE--ecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCc
Confidence 2332 345788899999998888876433321 122 22334566899999998 22 22 1101
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+..
T Consensus 245 aGN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 245 SGNVATEDVLYMLHGLGIET 264 (287)
T ss_pred cccccHHHHHHHHHhcCCCC
Confidence 22334578899999999874
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=59.53 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=141.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhC----CCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVG----LDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG----~~~ 171 (348)
++.++.+..++.+.+.|+..|-++.... +..+. +.++.+.+. +..+.+-. ....+.++...++| ++.
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~--~~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAA--SPGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCC--CHHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCCCCE
Confidence 7899999999999999999987754311 11222 455555542 34433221 23466788888888 998
Q ss_pred eeccCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 172 YNHNLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+..-.++. ....++.+ ...+...++++.+++.|+.++.+.+.+...+++.+.+.++.+.+++ ++.+.+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l----- 162 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI----- 162 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 8887655543 34445543 3467788899999999999888777776678899999999999998 776532
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeCCeeccCCCCCchH
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 322 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~ 322 (348)
+.| ....+|+++.+++...|..+|+..+.+...-|+ ++ .-....++.+||+-+ +.|-- -.+.+...++
T Consensus 163 -~DT----~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~tE~ 236 (268)
T cd07940 163 -PDT----VGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAALEE 236 (268)
T ss_pred -CCC----CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-cccccccHHH
Confidence 223 234678899999999999888622333321232 22 234466889999988 22210 0123344578
Q ss_pred HHHHHHHcC
Q psy14485 323 DSKLLKKLG 331 (348)
Q Consensus 323 ~~~~i~~~G 331 (348)
+...++..|
T Consensus 237 lv~~L~~~~ 245 (268)
T cd07940 237 VVMALKTRY 245 (268)
T ss_pred HHHHHHhcc
Confidence 888888886
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.1e-06 Score=65.79 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=46.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCC--CEEEEeccCCCCCcccHHHHHHHHHHHHhcC--c
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA--TRFCMGAAWRELKDRDLDNIENMICEVKKIG--L 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~ 147 (348)
|.+|+.+|.||.....+... .....+.+++.+.++.+...+. ..|.|+|| ++.-..+.+.+.++++.+++.+ .
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GG-EPll~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPK--KGEEMSIEELEEIIDELKEKGFRPSTVVFTGG-EPLLYLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp -S--S---TTTS-TTTSST---GGGS--HHHHHHHHHHHHHTT----EEEEESS-SGGGSTTHHHHHHHHCTSTT-----
T ss_pred cCCcCCCCccCCcCccCCCc--cCCcccHhHHHHHHHHHHhcCCceEEEEEECC-CCccccCHHHHHHHHHHHHhhCCCc
Confidence 79999999999975533222 2234688888888887777665 56899987 4221245678999999998876 6
Q ss_pred EEEEe-cCCCC
Q psy14485 148 ETCLT-LGMLN 157 (348)
Q Consensus 148 ~i~~~-~g~l~ 157 (348)
.+.+. .|.+.
T Consensus 82 ~i~i~TNg~~~ 92 (119)
T PF13394_consen 82 KIRIETNGTLP 92 (119)
T ss_dssp EEEEEE-STTH
T ss_pred eEEEEeCCeec
Confidence 66654 35544
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0026 Score=59.62 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=139.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++-++.++.+.+.|++.|-.+... +|.. .....-.+.++.++. .+..+.+- ....+.++...++|++.+.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v~i 140 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEVAV 140 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEEEE
Confidence 3789999999999999999998765431 2210 111122334444443 23333211 23888999999999999999
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe--eec-CC---CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGI--IGL-SE---SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i--~Gl-ge---t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+-+++...+ ++++. ...+...+.++.+++.|+.+..++. +|. .+ +++.+.+.++.+.+.+ .+.|.+
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l-- 216 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL-- 216 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe--
Confidence 8866765444 33332 2455556799999999998876654 453 22 5677888888888887 666542
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eecc--
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLLT-- 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~~-- 314 (348)
..| ....+|.++.+++...|..+|...|.+-. |+ +..-....++.+||+.+ +. |+ -+..
T Consensus 217 ----~DT----~G~a~P~~v~~lv~~l~~~~~~~~i~~H~--Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~gr 286 (347)
T PLN02746 217 ----GDT----IGVGTPGTVVPMLEAVMAVVPVDKLAVHF--HDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGA 286 (347)
T ss_pred ----cCC----cCCcCHHHHHHHHHHHHHhCCCCeEEEEE--CCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCC
Confidence 233 23456788888888888877753333211 22 22334566899999998 22 22 1111
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+..
T Consensus 287 aGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 287 SGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 12334578888999998873
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0017 Score=59.22 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=136.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCC------CCCcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHHH
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----------LGMLNENQ 160 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~------~~~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e~ 160 (348)
.++.++.++.+..+.+.|+..|-++++.. .....+.+.+.++.+.+....+...+. |....++.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHH
Confidence 37899999999999999999987765421 012223344444443333222221111 12346788
Q ss_pred HHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCC
Q psy14485 161 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 161 l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~ 238 (348)
++...++|++.+.+..-.+ ..+...++++.+++.|+.+...+.+ +...+++.+.+.++.+.+.+ +
T Consensus 97 i~~~~~~g~~~iri~~~~~-----------~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G--a 163 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALN-----------DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG--A 163 (275)
T ss_pred HHHHHHcCCCEEEEeecCC-----------hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 9999999999988755332 3678899999999999987766554 33567888999999999998 7
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCcceee---e--CC
Q psy14485 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSIF---Y--GD 310 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~~---~--~~ 310 (348)
+.+.+. .| ....+|.++.+++...|..++ +++...-|| ++ .-....++.+||+.+- . |+
T Consensus 164 ~~i~l~------DT----~G~~~P~~v~~lv~~l~~~~~---~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~ 230 (275)
T cd07937 164 DSICIK------DM----AGLLTPYAAYELVKALKKEVG---LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSG 230 (275)
T ss_pred CEEEEc------CC----CCCCCHHHHHHHHHHHHHhCC---CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 765432 23 245678899999999998776 232221232 22 3345668899999882 1 22
Q ss_pred eeccCCCCCchHHHHHHHHcCCCc
Q psy14485 311 KLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 311 ~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+.+.++....++..|+..
T Consensus 231 ---~aGN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 231 ---GTSQPSTESMVAALRGTGRDT 251 (275)
T ss_pred ---CcCChhHHHHHHHHHccCCCC
Confidence 123344578888888888874
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0039 Score=56.42 Aligned_cols=210 Identities=16% Similarity=0.117 Sum_probs=139.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++.. .. .+...+.++.+...+ ..+ ......+.+.++...++|++.+.+
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P----~~--~~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP----AA--SPQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC----CC--CHHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCEEEE
Confidence 479999999999999999999987642 11 134455555554432 223 223356778899999999999998
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++...+ ..+++ ...+...+.++.+++.|+.++.++.-..+-+++.+.+.++.+.+++ ++.+.+ +.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------~D 162 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI------AD 162 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE------CC
Confidence 8766654443 33322 2455677788999999999998887766777899999999999887 665432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
| ....+|++..+++...|..++ ..+.+ .-|+ +.--....++.+||+.+ +. |+ .+.+.+.++.
T Consensus 163 t----~G~~~P~~v~~~~~~~~~~~~-~~i~~--H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe---raGn~~~e~~ 232 (262)
T cd07948 163 T----VGIATPRQVYELVRTLRGVVS-CDIEF--HGHNDTGCAIANAYAALEAGATHIDTTVLGIGE---RNGITPLGGL 232 (262)
T ss_pred c----CCCCCHHHHHHHHHHHHHhcC-CeEEE--EECCCCChHHHHHHHHHHhCCCEEEEecccccc---ccCCccHHHH
Confidence 3 235677888899988888776 33322 1122 22334566889999987 11 22 1223345677
Q ss_pred HHHHHHcC
Q psy14485 324 SKLLKKLG 331 (348)
Q Consensus 324 ~~~i~~~G 331 (348)
...++..+
T Consensus 233 ~~~l~~~~ 240 (262)
T cd07948 233 IARMYTAD 240 (262)
T ss_pred HHHHHhcc
Confidence 77776553
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0013 Score=62.46 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=140.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++. |... +.-.+.++.+.+.+ ..+.. ......+.++...++|++.+.+
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~--~~~~e~i~~i~~~~~~~~v~~-~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF----PIAS--EGEFEAIKKISQEGLNAEICS-LARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--hHHHHHHHHHHhcCCCcEEEE-EcccCHHHHHHHHHcCcCEEEE
Confidence 37899999999999999999987642 2111 12235566665543 33332 2245678899999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++... ..++++ ...+...++++.+++.|+.+..++.-+...+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------~D 162 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI------AD 162 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE------eC
Confidence 887765443 344433 2567778899999999999887766555567888999999998888 666443 22
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeCCeeccCCCCCchHHHH
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTNDDSK 325 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~~~~ 325 (348)
|- ...+|.++.+++...|..++ +++...-|| ++ .-....++.+||+.+ +.|-- -.+.+.+.++...
T Consensus 163 T~----G~~~P~~v~~li~~l~~~~~---~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv~ 234 (363)
T TIGR02090 163 TV----GVLTPQKMEELIKKLKENVK---LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVVM 234 (363)
T ss_pred CC----CccCHHHHHHHHHHHhcccC---ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHHH
Confidence 32 34577888888888876665 333221232 22 234566899999887 22210 0123344567777
Q ss_pred HHHH-cCCCc
Q psy14485 326 LLKK-LGINT 334 (348)
Q Consensus 326 ~i~~-~G~~p 334 (348)
.++. .|+.+
T Consensus 235 ~L~~~~g~~~ 244 (363)
T TIGR02090 235 ALKYLYGVKT 244 (363)
T ss_pred HHHHhhCCCC
Confidence 7776 78764
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.9e-05 Score=61.59 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcE-E
Q psy14485 73 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-ATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLE-T 149 (348)
Q Consensus 73 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~-i 149 (348)
.+|+.+|.||..+..+..... ..++.+++.+.++.+.+.+ +..|.|+|| ++......+.+.++++.+++. +.. +
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g--~~~~~~~~~~i~~~l~~~~~~~gVt~sGG-EPllq~~~~~l~~ll~~~k~~~~~~~~ 99 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGG--KEFTEALEKEIIRDLNDNPLIDGLTLSGG-DPLYPRNVEELIELVKKIKAEFPEKDI 99 (154)
T ss_pred CCCCCCCcCCCcccccCCCCC--CcCCHHHHHHHHHHHHhcCCcCeEEEeCh-hhCCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 689999999997765432211 2467555555555555554 677999988 433223568999999999875 443 4
Q ss_pred EEecCCCCHHHH
Q psy14485 150 CLTLGMLNENQA 161 (348)
Q Consensus 150 ~~~~g~l~~e~l 161 (348)
....|....+.+
T Consensus 100 ~~~tG~~~~~~~ 111 (154)
T TIGR02491 100 WLWTGYTWEEIL 111 (154)
T ss_pred EEeeCccHHHHh
Confidence 446665555544
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0028 Score=60.61 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=139.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++.++.++.++.+.+.|++.|-++. |...+ .-.+.++.+.+.+....+ .......+.++...++|++.+.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~----p~~~~--~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF----PAVSE--DEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC----CCcCh--HHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEE
Confidence 37899999999999999999987632 22111 123455555554333221 223345788999999999999998
Q ss_pred CCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 176 LDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 176 ~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
+-+++... ..++.. ...+...++++.+++.|+.+..+...+.-.+++.+.+.++.+.+.+ ++.|.+ +.|
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l------~DT 167 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF------CDT 167 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE------ecc
Confidence 87765433 345432 2455666789999999999888877666677899999999999888 666432 234
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeC--CeeccCCCCCchHHH
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYG--DKLLTTDNTKTNDDS 324 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~--~~~~~~~g~~~~~~~ 324 (348)
- ...+|.++.+++...+..+ + +.+...-|| ++ .-....|+.+||+.+ +.| + .+.+...+++.
T Consensus 168 ~----G~~~P~~v~~lv~~l~~~~-~--~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe---raGNa~lE~vv 237 (378)
T PRK11858 168 V----GILDPFTMYELVKELVEAV-D--IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE---RAGNAALEEVV 237 (378)
T ss_pred C----CCCCHHHHHHHHHHHHHhc-C--CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc---cccCccHHHHH
Confidence 2 3467888888888887665 3 222211132 12 234566889999988 222 2 12334456777
Q ss_pred HHHH-HcCCCc
Q psy14485 325 KLLK-KLGINT 334 (348)
Q Consensus 325 ~~i~-~~G~~p 334 (348)
..++ ..|+..
T Consensus 238 ~~L~~~~g~~~ 248 (378)
T PRK11858 238 MALKYLYGIDL 248 (378)
T ss_pred HHHHHHhCCCC
Confidence 7776 577763
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0036 Score=59.56 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=139.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++- |... +.-.+.++.+.+. +..+. .......+.++...++|++.+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~--~~~~e~i~~i~~~~~~~~i~-~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI----PAMG--EEERAVIRAIVALGLPARLM-AWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--HHHHHHHHHHHHcCCCcEEE-EEcCCCHHHHHHHHcCCcCEEEE
Confidence 37899999999999999999987742 2111 1223455555543 23332 33445688899999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++... ..+++. ...+...++++.+++.|+.+..+...+.-.+++.+.+.++.+.+.+ ++.+. .+.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l~D 163 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------FAD 163 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------Ecc
Confidence 887665433 345433 2345566899999999998887766655567888899999998887 66543 233
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
|- ...+|.++.+++...+..++ +.++..-|| +..-....|+.+||+.+ +. |+ .+.+.+.+++
T Consensus 164 T~----G~~~P~~v~~lv~~l~~~~~---v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe---raGN~~lE~l 233 (365)
T TIGR02660 164 TV----GILDPFSTYELVRALRQAVD---LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE---RAGNAALEEV 233 (365)
T ss_pred cC----CCCCHHHHHHHHHHHHHhcC---CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc---ccccCCHHHH
Confidence 32 35678888888888876553 233321232 12234566899999988 22 22 2334445677
Q ss_pred HHHH-HHcCCCc
Q psy14485 324 SKLL-KKLGINT 334 (348)
Q Consensus 324 ~~~i-~~~G~~p 334 (348)
...+ ...|+.+
T Consensus 234 v~~L~~~~g~~~ 245 (365)
T TIGR02660 234 AMALKRLLGRDT 245 (365)
T ss_pred HHHHHHhcCCCC
Confidence 7777 6677764
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.018 Score=52.66 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=136.5
Q ss_pred ccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 97 ILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.++.++-++.++.+ .+.|++.|-++.. .-++.+.+.+.++.+.-... ++.+..-. .....++..+++|++.
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~--~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g~~~ 90 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASA--RVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAGAKV 90 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCC--CCCHHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCCCCE
Confidence 37899999999986 5669999877432 11222223444444322111 23333222 2345688999999999
Q ss_pred eeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEee-e--cCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 172 YNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGII-G--LSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 172 i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~-G--lget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+.+.+-+++... +.+++. ...+...+.++.+++.|+.+..++.- | .--+++.+.+.++.+.+++ ++.+.+
T Consensus 91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G--~~~i~l-- 166 (280)
T cd07945 91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP--IKRIML-- 166 (280)
T ss_pred EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC--CCEEEe--
Confidence 999887765433 445443 35677788899999999988777653 2 1236788888888898888 666432
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCCCCC
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTDNTK 319 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~ 319 (348)
+.| ....+|.+..+++...|..+|+..+.+- -|| +..-....++.+||+.+ +.|-- -.+.+..
T Consensus 167 ----~DT----~G~~~P~~v~~l~~~l~~~~~~~~i~~H--~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN~~ 235 (280)
T cd07945 167 ----PDT----LGILSPFETYTYISDMVKRYPNLHFDFH--AHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGNAP 235 (280)
T ss_pred ----cCC----CCCCCHHHHHHHHHHHHhhCCCCeEEEE--eCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccCcc
Confidence 233 2346777888888888877776443322 122 22334566899999987 22110 0123344
Q ss_pred chHHHHHHH-HcCCCc
Q psy14485 320 TNDDSKLLK-KLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~-~~G~~p 334 (348)
.++...+++ ..|+..
T Consensus 236 ~E~~v~~L~~~~g~~t 251 (280)
T cd07945 236 LASVIAVLKDKLKVKT 251 (280)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 577788884 578863
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.011 Score=54.02 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=135.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEE-----ecC--CCCHHHHHHHHH
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCL-----TLG--MLNENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~-----~~g--~l~~e~l~~Lk~ 166 (348)
.++.++.++.++.+.+.|++.|-++.+..+ ..+ .+.++.+.+. +..+.. ..+ ..++..++.+.+
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~ 89 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--PKD----TEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLE 89 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--HHH----HHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHh
Confidence 378999999999999999999987543211 222 3333444332 223222 122 223457888999
Q ss_pred hCCCeeeccCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCe
Q psy14485 167 VGLDYYNHNLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 167 aG~~~i~~g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
+|++.+.+.+-+++- ..+.+++. ...+...+.++.+++.|+.++.+.+ -|...+++.+.+.++.+.+.+ ++.
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g--~~~ 167 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--ADW 167 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--CCE
Confidence 999998887666543 33444433 4677888899999999998876533 122346777788888888887 665
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCee
Q psy14485 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKL 312 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~ 312 (348)
+. .+.| ....+|+++.+++...|..+|+..+.+- -|+ +..-....++.+||+.+ +. |+
T Consensus 168 i~------l~DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H--~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe-- 233 (273)
T cd07941 168 LV------LCDT----NGGTLPHEIAEIVKEVRERLPGVPLGIH--AHNDSGLAVANSLAAVEAGATQVQGTINGYGE-- 233 (273)
T ss_pred EE------EecC----CCCCCHHHHHHHHHHHHHhCCCCeeEEE--ecCCCCcHHHHHHHHHHcCCCEEEEecccccc--
Confidence 43 2333 2356788999999999988887433321 132 22334566899999988 22 22
Q ss_pred ccCCCCCchHHHHHHH-HcCCC
Q psy14485 313 LTTDNTKTNDDSKLLK-KLGIN 333 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~-~~G~~ 333 (348)
.+.+.+.++....++ ..|+.
T Consensus 234 -raGn~~~e~~~~~L~~~~~~~ 254 (273)
T cd07941 234 -RCGNANLCSIIPNLQLKMGYE 254 (273)
T ss_pred -ccccccHHHHHHHHHhccCCC
Confidence 123344566766665 56764
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0078 Score=59.83 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHH----HHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYR----LKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~----Lk~aG~~~i 172 (348)
.++.++-++.++.+.+.|++.|-++... .+..+.+.+..+.+.. .+..+++-.. ...+.++. ++++|.+++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~--~s~~d~~~v~~i~~~~--~~~~i~a~~r-~~~~did~a~~a~~~~~~~~v 96 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA--SSPGDFEAVKRIARTV--KNSTVCGLAR-AVKKDIDAAAEALKPAEAPRI 96 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC--CChHHHHHHHHHHhhC--CCCEEEEEcc-CCHHHHHHHHHHhhcCCCCEE
Confidence 3799999999999999999998774321 1223344443333222 2344443221 22333444 447899999
Q ss_pred eccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+.+-+++-. ...++.. ...+...++++.+++.|+.+..+...+.--+++.+.+.++.+.+.+ ++.+. .
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~------l 168 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTIN------I 168 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEE------E
Confidence 9888776443 3344432 2445566889999999999877766665556788888888888887 66543 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.|- ...+|.++.+++...+..+|+ ..+.++..-|| +..-....|+.+||+.+ +. |+ .+.+...
T Consensus 169 ~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGE---RaGNa~l 241 (513)
T PRK00915 169 PDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE---RAGNAAL 241 (513)
T ss_pred ccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccc---cccCccH
Confidence 3442 345788999999998888875 22344322232 11234566899999988 22 22 1233444
Q ss_pred hHHHHHHHHc
Q psy14485 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++....++..
T Consensus 242 E~vv~~L~~~ 251 (513)
T PRK00915 242 EEVVMALKTR 251 (513)
T ss_pred HHHHHHHHhh
Confidence 6666666543
|
|
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00067 Score=56.32 Aligned_cols=88 Identities=14% Similarity=0.244 Sum_probs=52.3
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCC--CEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA--TRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
.+.+ .+|+.+|.||..+..+...... ..+.+.+.+.++.+...+. ..|.|+|| ++......+.+.++++.+++
T Consensus 20 ~if~--~GCnl~C~~C~n~~~~~~~~g~--~~~~~~~~~il~~~~~~~~~~~gvt~sGG-EPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 20 TLFV--SGCVHQCPGCYNKSTWRLNSGH--PFTKEMEDQIIADLNDTRIKRQGLSLSGG-DPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred EEEc--CCCCCcCcCCCChhhccCCCCc--ccCHHHHHHHHHHHHHhCCCCCcEEEECC-CccchhhHHHHHHHHHHHHH
Confidence 3444 8999999999876644221111 2343333333344434443 57889888 43322356788889998886
Q ss_pred c--CcEEEEecCCCCHH
Q psy14485 145 I--GLETCLTLGMLNEN 159 (348)
Q Consensus 145 ~--~~~i~~~~g~l~~e 159 (348)
. +..+.+..|-.-+|
T Consensus 95 ~~~~~~i~~~tGy~~ee 111 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDE 111 (154)
T ss_pred HCCCCCEEEecCCCHHH
Confidence 3 45666667755444
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=57.25 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++.+..++.+.+.|+..+-..||.+.+ ...+++++..+-+.+....+...+. +| .+-+..+
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 789999999999999999999777663322 1224444544444444333333221 22 2335678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-. ...+....+++.++++|..+...+.| +.-.|.+.+++.++.+.+.+ .+
T Consensus 104 ~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G--ad 170 (499)
T PRK12330 104 EKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG--AD 170 (499)
T ss_pred HHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--CC
Confidence 88888999987654322 23367778899999999876555544 55779999999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccc---cchhhHHHHHHhCccee---eeCCee
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
.|.+ +.| ....+|.+..+++...|..+| +..|.+-. |+ +..-....|+.+||+.+ +.|- -
T Consensus 171 ~I~I------kDt----aGll~P~~~~~LV~~Lk~~~~~~ipI~~H~--Hnt~GlA~An~laAieAGad~vDtai~Gl-g 237 (499)
T PRK12330 171 SICI------KDM----AALLKPQPAYDIVKGIKEACGEDTRINLHC--HSTTGVTLVSLMKAIEAGVDVVDTAISSM-S 237 (499)
T ss_pred EEEe------CCC----ccCCCHHHHHHHHHHHHHhCCCCCeEEEEe--CCCCCcHHHHHHHHHHcCCCEEEeecccc-c
Confidence 6543 222 245678899999999998886 43333211 21 22233455899999998 2221 0
Q ss_pred ccCCCCCchHHHHHHHHcCCCc
Q psy14485 313 LTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~~~G~~p 334 (348)
..+..+..+++..+++..|+..
T Consensus 238 ~~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 238 LGPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred ccccchhHHHHHHHHHhcCCCC
Confidence 0122334578889999999863
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.019 Score=56.03 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=131.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEE--e----cC------CCCHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCL--T----LG------MLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~--~----~g------~l~~e 159 (348)
++.++.+..++.+.+.|+..|-+.||-+. ....+.+.+..+.+.+. +..+.. . .| .+-+.
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK--NTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC--CCEEEEEeccccccCcccccchhhHH
Confidence 78999999999999999999977655221 11122333333322222 333322 1 12 22334
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCC
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~ 237 (348)
.++...++|++.+.+..-.++ .+....+++.+++.|..+...+-|.. ..+.+.+++..+.+.+.+
T Consensus 100 fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-- 166 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-- 166 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--
Confidence 578888999998887654443 35677889999999998775554433 568888999999999888
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec
Q psy14485 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL 313 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~ 313 (348)
.+.|.+ +.| ....+|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+-.... +.
T Consensus 167 ad~I~i------~Dt----~G~l~P~~v~~Lv~~lk~~~~-vpI~~H--~Hnt~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 167 VDSICI------KDM----AGLLTPKRAYELVKALKKKFG-VPVEVH--SHCTTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred CCEEEE------CCc----cCCcCHHHHHHHHHHHHHhcC-CceEEE--ecCCCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 666542 222 234678888999998887765 223221 121 2233445589999999821110 11
Q ss_pred -cCCCCCchHHHHHHHHcCCCc
Q psy14485 314 -TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 -~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..+++..+++..|+..
T Consensus 234 ~gagN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 234 MGTSQPPFESMYYAFRENGKET 255 (467)
T ss_pred CCCCChhHHHHHHHHHhcCCCC
Confidence 122344578889999999874
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.015 Score=57.38 Aligned_cols=213 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++-++.++.+.+.|++.|-++.. ..+..+. +.++.+.+. ...+..-. ....+.++...++|++.+.+
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p--~~~~~d~----e~v~~i~~~~~~~~i~a~~-r~~~~di~~a~~~g~~~v~i 92 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSA--ITSEGER----EAIKAVTDEGLNAEICSFA-RAVKVDIDAALECDVDSVHL 92 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC--cCCHHHH----HHHHHHHhcCCCcEEEeec-ccCHHHHHHHHhCCcCEEEE
Confidence 379999999999999999999877432 1122233 444555443 33443222 23467799999999999999
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++...+ .++.. ...+...++++.+++.|+.+..+..-+.-.+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 93 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~l------~D 164 (488)
T PRK09389 93 VVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRICF------CD 164 (488)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEEE------ec
Confidence 8877755433 34432 3556777888899999998877766554556788888888888887 676432 34
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
|- ...+|.++.+++...|...+ +.++..-|| +..-....|+.+||+.+ +. |+ .+.+...+++
T Consensus 165 Tv----G~~~P~~~~~lv~~l~~~~~---v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE---RaGNa~lE~l 234 (488)
T PRK09389 165 TV----GILTPEKTYELFKRLSELVK---GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE---RAGNASLEEV 234 (488)
T ss_pred CC----CCcCHHHHHHHHHHHHhhcC---CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc---cccCccHHHH
Confidence 42 34567788888777765443 233321232 11234566899999988 22 22 2334445677
Q ss_pred HHHHHHc-CCCc
Q psy14485 324 SKLLKKL-GINT 334 (348)
Q Consensus 324 ~~~i~~~-G~~p 334 (348)
...++.. |..+
T Consensus 235 v~~L~~~~g~~~ 246 (488)
T PRK09389 235 VMALKHLYDVET 246 (488)
T ss_pred HHHHHhhcCCCC
Confidence 7777663 6653
|
|
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=61.36 Aligned_cols=87 Identities=13% Similarity=0.235 Sum_probs=59.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~ 146 (348)
+.+...||+.+|.+|.....+... ...+...+.++|++.++... .+...|.|+|| + | .-...+.++++.+++.|
T Consensus 25 vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGG-E-P--~~~~~l~~Ll~~l~~~g 99 (212)
T COG0602 25 VFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGG-E-P--LLQPNLLELLELLKRLG 99 (212)
T ss_pred EEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCC-c-C--CCcccHHHHHHHHHhCC
Confidence 334357999999999966433221 13455688999998876542 24558999998 3 3 23356888899999888
Q ss_pred cEEEEec-CCCCHH
Q psy14485 147 LETCLTL-GMLNEN 159 (348)
Q Consensus 147 ~~i~~~~-g~l~~e 159 (348)
+.+.+.. |++...
T Consensus 100 ~~~~lETngti~~~ 113 (212)
T COG0602 100 FRIALETNGTIPVW 113 (212)
T ss_pred ceEEecCCCCcccc
Confidence 8887754 555443
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.033 Score=49.08 Aligned_cols=183 Identities=8% Similarity=-0.044 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKIGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. ...=..+++.+++ .+.+.++.-.. +...++.+.++|.+.+++
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---itfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---FTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---cccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 345677788888888999998763 3312121 1111233344433 33344444433 445789999999999999
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.|+. ....++++.+++.|..+.+++.+..+...+.+...+.. +|.+-++...| |.
T Consensus 98 H~Ea~-------------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gf-- 153 (228)
T PRK08091 98 QVEQT-------------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RT-- 153 (228)
T ss_pred cccCc-------------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CC--
Confidence 88863 12446788899999977888888776666665444332 56777777665 32
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..+.. - ...++-+..+|.+.+. ..|.+-+| +..+.......+|||.++.|..+.
T Consensus 154 gGQ~f-~-~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 154 GTKAP-S-DLILDRVIQVENRLGNRRVEKLISIDGS---MTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred CCccc-c-HHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChhhh
Confidence 22221 1 2344445555555443 22555443 223444567889999998887553
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.028 Score=54.75 Aligned_cols=209 Identities=16% Similarity=0.127 Sum_probs=131.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEE--Ee----------cCCCCHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETC--LT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~--~~----------~g~l~~e 159 (348)
++.++.+..++.+.+.|+..|=+.||.+.+ ...+.+.+..+.+.+. +..+. +. +..+.++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHHH
Confidence 789999999999999999999877663221 1123333333333222 33332 21 2234567
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCC
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~ 237 (348)
.++...++|++.+.+..-.++- ....++++.+++.|+.+...+-+-. -.+.+.+.+.++.+.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-- 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-- 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--
Confidence 8889999999998876543321 2466689999999987655544433 457888889999998888
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec
Q psy14485 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL 313 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~ 313 (348)
++.|.+ +.| ....+|....+++...|..++ ..|.+- .|+ +..-....|+.+||+.+-.... +.
T Consensus 168 ad~I~i------~Dt----~G~l~P~~v~~lv~alk~~~~-~pi~~H--~Hnt~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 168 ADSICI------KDM----AGILTPYVAYELVKRIKEAVT-VPLEVH--THATSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred CCEEEE------cCC----CCCCCHHHHHHHHHHHHHhcC-CeEEEE--ecCCCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 776543 223 245678888889888887765 323221 121 2233455689999999822110 10
Q ss_pred -cCCCCCchHHHHHHHHcCCCc
Q psy14485 314 -TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 -~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..++...+++..|+..
T Consensus 235 ~gaGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 235 GGTSQPATESMVAALQDLGYDT 256 (448)
T ss_pred CCcCCHhHHHHHHHHHhcCCCC
Confidence 122333578888898888873
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.024 Score=57.06 Aligned_cols=211 Identities=15% Similarity=0.088 Sum_probs=132.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHhc--CcEEEE--e----------cCCCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKKI--GLETCL--T----------LGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~~--~~~i~~--~----------~g~l~~e~l 161 (348)
++.++.+..++.+.+.|+..|=++||-+... +.--+.=.+.++.+++. +..+.. . +..+.++.+
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 7899999999999999999998876522211 00011123444444431 333321 1 223445678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.++ .+....+++.+++.|+.+...+-+-. ..|.+.+.+.++.+.+.+ .+
T Consensus 98 ~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--ad 164 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALND-----------PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--VD 164 (582)
T ss_pred HHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--CC
Confidence 8899999998876543332 25678889999999998776654443 468899999999999998 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=.... +- .
T Consensus 165 ~I~i------~Dt----~G~~~P~~v~~lv~~lk~~~~-~pi~~H--~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~ 231 (582)
T TIGR01108 165 SICI------KDM----AGILTPKAAYELVSALKKRFG-LPVHLH--SHATTGMAEMALLKAIEAGADGIDTAISSMSGG 231 (582)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHHhCC-CceEEE--ecCCCCcHHHHHHHHHHhCCCEEEecccccccc
Confidence 5432 233 234678888899988887775 222221 122 2233455689999999821100 00 2
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.++..+++..+++..|+..
T Consensus 232 tGn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 232 TSHPPTETMVAALRGTGYDT 251 (582)
T ss_pred ccChhHHHHHHHHHhcCCCc
Confidence 33344578888888888874
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.021 Score=55.57 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=133.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC-C-----CCcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR-E-----LKDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~-~-----~~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++++..+..+.+.|+..+-+.||-+ + ....+++++..+-+.++...+..-+. .| .+-+..+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv 111 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFI 111 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHH
Confidence 6789999999999999999987766622 1 11234555555555554433332222 22 2333457
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|++.+.+ +..+ ...+....+++.+++.|..+...+.|=. ..|.+-+++.++.+.+++ ++
T Consensus 112 ~~a~~~Gidi~Ri--------fd~l---nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--ad 178 (468)
T PRK12581 112 SLSAQNGIDVFRI--------FDAL---NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--AD 178 (468)
T ss_pred HHHHHCCCCEEEE--------cccC---CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--CC
Confidence 8888899997753 3332 3677888999999999997655544422 668888899999898888 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|.+..+++...|. .++..|.+- .|+ +..-....|+.+||+.+=.... +. .
T Consensus 179 ~I~I------kDt----aG~l~P~~v~~Lv~alk~-~~~~pi~~H--~Hnt~GlA~An~laAieAGad~vD~ai~g~g~g 245 (468)
T PRK12581 179 SICI------KDM----AGILTPKAAKELVSGIKA-MTNLPLIVH--THATSGISQMTYLAAVEAGADRIDTALSPFSEG 245 (468)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHh-ccCCeEEEE--eCCCCccHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 6543 222 235677888888888876 344333221 121 2233455689999998821110 11 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+++.+++..+++..|+..
T Consensus 246 agN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 246 TSQPATESMYLALKEAGYDI 265 (468)
T ss_pred cCChhHHHHHHHHHhcCCCC
Confidence 22344578888999999874
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.031 Score=56.42 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=133.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHhc--CcEEE--Ee----------cCCCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKKI--GLETC--LT----------LGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~~--~~~i~--~~----------~g~l~~e~l 161 (348)
++.++.+..+..+.+.|+..+-+.||-+... +.--+.-.+.++.+++. +..+. +. +..+-+..+
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 6789999999999999999997776522110 00112223444444432 23322 11 223456778
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.+ ..+....+++.+++.|..+...+-|-. ..|.+.+++.++.+.+.+ .+
T Consensus 103 ~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--ad 169 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN-----------DVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--CD 169 (592)
T ss_pred HHHHHCCCCEEEEEEecC-----------hHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--CC
Confidence 899999999887654333 235778889999999998776665533 568899999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ ..| .....|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=..-. +. .
T Consensus 170 ~I~i------~Dt----~G~~~P~~~~~lv~~lk~~~~-~pi~~H--~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~ 236 (592)
T PRK09282 170 SICI------KDM----AGLLTPYAAYELVKALKEEVD-LPVQLH--SHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFG 236 (592)
T ss_pred EEEE------CCc----CCCcCHHHHHHHHHHHHHhCC-CeEEEE--EcCCCCcHHHHHHHHHHhCCCEEEeeccccCCC
Confidence 6533 222 234678888899988888775 222221 122 2233455689999998821100 10 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.++..+.+...++..|+.+
T Consensus 237 agn~~~e~vv~~L~~~g~~~ 256 (592)
T PRK09282 237 TSQPPTESMVAALKGTPYDT 256 (592)
T ss_pred cCCHhHHHHHHHHHhCCCCC
Confidence 22344577888888888874
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.075 Score=46.82 Aligned_cols=195 Identities=10% Similarity=0.087 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
+.-.+.++++.+.+.|++.+++- +|-+-|. .. .=.++++.+++. .+.+.++.-.- ....++.+.++|.+.++
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN-~t--fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPN-LT--IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCC-cc--cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 45677788888888899998763 3322221 11 112345555442 34444444433 34568899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.+ ...++++.+|++|++. ++-+..+...+.+...+ +. +|.|-++...| |..
T Consensus 91 ~H~Ea~~-------------~~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l----~~---vD~VlvMtV~P--Gf~ 146 (223)
T PRK08745 91 FHPEASR-------------HVHRTIQLIKSHGCQA--GLVLNPATPVDILDWVL----PE---LDLVLVMSVNP--GFG 146 (223)
T ss_pred EcccCcc-------------cHHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHH----hh---cCEEEEEEECC--CCC
Confidence 9888631 2346678888898765 44444444444443332 22 56777777665 422
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHH
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
.+.. - ...++-+..+|.+++. ..|.+.+| +..+.......+|||.++.|..+.. + ....+..+.+++
T Consensus 147 --GQ~f-i-~~~l~KI~~l~~~~~~~~~~~~IeVDGG---I~~eti~~l~~aGaDi~V~GSaiF~-~-~d~~~~~~~lr~ 217 (223)
T PRK08745 147 --GQAF-I-PSALDKLRAIRKKIDALGKPIRLEIDGG---VKADNIGAIAAAGADTFVAGSAIFN-A-PDYAQVIAQMRA 217 (223)
T ss_pred --Cccc-c-HHHHHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEChhhhC-C-CCHHHHHHHHHH
Confidence 2211 1 2334444444544432 33555554 2234455678899999998876532 2 224445555544
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.077 Score=46.27 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=108.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.++-.+.++++.+.+.|+..+++- +|-+-|. ...=.++++.+++ ..+.+.++.-.. ++..++.+.++|.+.+.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN---~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It 86 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINN---ITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---cccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 345677788888888999988763 3322121 1112244455544 233444444433 44578999999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.+ ...++++.+|++|.+. ++-+..+...+.+...+. . +|.+-++...| |..
T Consensus 87 ~H~Ea~~-------------~~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~----~---vD~VlvMsV~P--Gf~ 142 (210)
T PRK08005 87 IHAESVQ-------------NPSEILADIRAIGAKA--GLALNPATPLLPYRYLAL----Q---LDALMIMTSEP--DGR 142 (210)
T ss_pred EcccCcc-------------CHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHH----h---cCEEEEEEecC--CCc
Confidence 9888631 2335678888899875 444444444444433322 2 56777776654 432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.+. =....++-+..+|.+.+...|.+-+| +..+.......+|||.++.|..+.
T Consensus 143 --GQ~--f~~~~~~KI~~l~~~~~~~~I~VDGG---I~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 143 --GQQ--FIAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred --cce--ecHHHHHHHHHHHHhcccCCEEEECC---CCHHHHHHHHHCCCCEEEEChHhh
Confidence 111 11345555566676666655766554 223444567889999998887553
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.07 Score=53.89 Aligned_cols=208 Identities=17% Similarity=0.135 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++.+..++.+.+.|+..+-+.||-+.+ ...+++++..+.+.+....+...+. .| .+-++.+
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 689999999999999999999776552211 1233444444444433322222222 11 2334568
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.+ ..+....+++.+++.|..+...+-| ....|.+.+.+.++.+.+.+ .+
T Consensus 104 ~~a~~~Gid~~rifd~ln-----------d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G--ad 170 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN-----------DPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG--VD 170 (593)
T ss_pred HHHHhcCCCEEEEeeeCC-----------cHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--CC
Confidence 888999999887653212 2467788999999999975444443 33678888999999998887 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceee---e--CCe
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--GDK 311 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~~~ 311 (348)
.+.+ ..| .....|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+- . |+
T Consensus 171 ~i~i------~Dt----~G~l~P~~~~~lv~~lk~~~~-~pi~~H--~Hnt~GlA~An~laAieAGa~~vD~ai~glG~- 236 (593)
T PRK14040 171 SLCI------KDM----AGLLKPYAAYELVSRIKKRVD-VPLHLH--CHATTGLSTATLLKAIEAGIDGVDTAISSMSM- 236 (593)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHHhcC-CeEEEE--ECCCCchHHHHHHHHHHcCCCEEEeccccccc-
Confidence 5543 222 234678888888888887653 222221 122 222344558999999982 1 22
Q ss_pred eccCCCCCchHHHHHHHHcCCCc
Q psy14485 312 LLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 312 ~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..+.+...++..|+..
T Consensus 237 --~~Gn~~le~vv~~L~~~~~~~ 257 (593)
T PRK14040 237 --TYGHSATETLVATLEGTERDT 257 (593)
T ss_pred --cccchhHHHHHHHHHhcCCCc
Confidence 123344577788888888763
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.065 Score=47.94 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=113.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCC-cccHHHHHHHHHHHHhcCcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELK-DRDLDNIENMICEVKKIGLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~-~~~~~~~~~l~~~i~~~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. .... ++++.+++ .+.+.++.-.. .+..++.+.++|.+.+.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp----~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It 103 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGP----WAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCIT 103 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCH----HHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEE
Confidence 345677888888888899998763 3322221 1223 33333333 23333333333 44568899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe-------eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN-------ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-------i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+-.|+.+ ...++++.+|++|.+ +.+++-+..+...+.+...+. . +|.|-++..
T Consensus 104 ~H~Ea~~-------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~----~---vD~VLvMtV 163 (254)
T PRK14057 104 LQAEGDI-------------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS----D---VEVIQLLAV 163 (254)
T ss_pred Eeecccc-------------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH----h---CCEEEEEEE
Confidence 9888631 234667888888875 456666666555555544432 2 567777776
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCC--Cc
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNT--KT 320 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~--~~ 320 (348)
.| |. ..+.. . ...++-+..+|.+++. ..|.+-+| +..+.......+|||.++.|..+...... ..
T Consensus 164 ~P--Gf--gGQ~F-i-~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i 234 (254)
T PRK14057 164 NP--GY--GSKMR-S-SDLHERVAQLLCLLGDKREGKIIVIDGS---LTQDQLPSLIAQGIDRVVSGSALFRDDRLVENT 234 (254)
T ss_pred CC--CC--Cchhc-c-HHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHH
Confidence 64 32 12211 1 2334444455544443 23555443 23344556788999999888765432111 01
Q ss_pred hHHHHHHHHcCCC
Q psy14485 321 NDDSKLLKKLGIN 333 (348)
Q Consensus 321 ~~~~~~i~~~G~~ 333 (348)
+...+++..+|-+
T Consensus 235 ~~l~~~~~~~~~~ 247 (254)
T PRK14057 235 RSWRAMFKVAGDT 247 (254)
T ss_pred HHHHHHHhhcCCc
Confidence 3445555555543
|
|
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.015 Score=55.35 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecC---
Q psy14485 82 CPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLG--- 154 (348)
Q Consensus 82 C~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g--- 154 (348)
|-+++.. ....| .-+.++|...++.++.. +...|-+.|| + |+ -.+++.++++..++.|+ ++.++..
T Consensus 78 CFa~A~~--ag~vY-Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGG-E-PT--vr~DL~eiv~~a~e~g~~hVqinTnGir 150 (475)
T COG1964 78 CFAYAEE--AGYIY-EPTLEQIREMLRNLKKEHPVGANAVQFTGG-E-PT--LRDDLIEIIKIAREEGYDHVQLNTNGIR 150 (475)
T ss_pred CcCchhh--cCccc-CCCHHHHHHHHHHHHhcCCCCCceeEecCC-C-cc--chhhHHHHHHHHhhcCccEEEEccCcee
Confidence 5555421 22345 47889999888888754 3455777777 3 33 34889999999999876 6666533
Q ss_pred -CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-ee--EeEeeecCCCHHHHHHHHH
Q psy14485 155 -MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-IC--CGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 155 -~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~--~~~i~Glget~e~~~~~l~ 229 (348)
..+.+..+.|++||++.+.+..+. +++.+.+. .-++-.+++.++++|+. +. .+++= |-+..++-+.++
T Consensus 151 lA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~r--gvNd~~lG~iir 223 (475)
T COG1964 151 LAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIR--GVNDHELGAIIR 223 (475)
T ss_pred eccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhc--ccChHHHHHHHH
Confidence 345899999999999999999988 77766554 33444589999999986 32 33333 555566667777
Q ss_pred HHHhc
Q psy14485 230 QLANL 234 (348)
Q Consensus 230 ~l~~l 234 (348)
+....
T Consensus 224 fa~~n 228 (475)
T COG1964 224 FALNN 228 (475)
T ss_pred HHHhc
Confidence 76654
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.053 Score=53.68 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHH----HHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYR----LKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~----Lk~aG~~~ 171 (348)
++.++-++.++.+.+.|++.|-.+.. ..+..+.+.+ +.+.+. +..+++- ....++.++. +..++.++
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p--~~s~~d~e~v----~~i~~~~~~~~i~al-~r~~~~did~a~~al~~~~~~~ 92 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFP--VSSPGDFEAV----QRIARTVKNPRVCGL-ARCVEKDIDAAAEALKPAEKFR 92 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECC--CCCHHHHHHH----HHHHHhCCCCEEEEE-cCCCHHhHHHHHHhccccCCCE
Confidence 79999999999999999999866322 1122333333 444332 3444422 2233444444 44457888
Q ss_pred eeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 172 YNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+.+-+++-.. ..++.. ...+...++++.+++.|..+..+...+.--+++.+.+.++.+.+.+ ++.+.
T Consensus 93 v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~------ 164 (494)
T TIGR00973 93 IHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN------ 164 (494)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE------
Confidence 988877765443 344432 2345556788999999998776666665556788888888888887 65533
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~ 319 (348)
.+.|- ...+|.++.+++...|..+|.. .+.++..-|| +..-....++.+||+.+ +. |+ .+.+..
T Consensus 165 l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGE---RaGNa~ 237 (494)
T TIGR00973 165 IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGE---RAGNAA 237 (494)
T ss_pred eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccc---cccCcc
Confidence 24442 3467789999999888888753 2444422233 11234566899999988 22 22 123344
Q ss_pred chHHHHHHHH
Q psy14485 320 TNDDSKLLKK 329 (348)
Q Consensus 320 ~~~~~~~i~~ 329 (348)
.+++.-.++.
T Consensus 238 le~vv~~L~~ 247 (494)
T TIGR00973 238 LEEVVMALKV 247 (494)
T ss_pred HHHHHHHHHH
Confidence 4566555543
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.094 Score=52.83 Aligned_cols=211 Identities=15% Similarity=0.130 Sum_probs=133.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEE---e-cC------CCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCL---T-LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~---~-~g------~l~~e~l 161 (348)
+..++++..+..+.+.|+..+-+.||.+. ....+++++..+-+.+....+..-+ | +| .+-+..+
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v 102 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV 102 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence 67889999999988899999977766321 1112445555544444433333333 1 22 2334577
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|++.+.+ ++.+ ...+....+++.+++.|..+...+.| ....|.+.+.+.++.+.+++ ++
T Consensus 103 ~~a~~~Gidv~Ri--------fd~l---nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--ad 169 (596)
T PRK14042 103 KLAVNNGVDVFRV--------FDAL---NDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--CD 169 (596)
T ss_pred HHHHHcCCCEEEE--------cccC---cchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--CC
Confidence 7888899997653 3322 35667778899999999976655444 33889999999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|....+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=.... +. .
T Consensus 170 ~I~I------kDt----aG~l~P~~v~~lv~alk~~~~-ipi~~H--~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 170 SIAI------KDM----AGLLTPTVTVELYAGLKQATG-LPVHLH--SHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred EEEe------CCc----ccCCCHHHHHHHHHHHHhhcC-CEEEEE--eCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 6543 222 234677888888888887664 222221 121 2223345689999998821100 00 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+++.++...+++..|+.+
T Consensus 237 tGn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 237 ASHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CCcHhHHHHHHHHHhcCCCC
Confidence 23344578888999999874
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.14 Score=51.08 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=124.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe-----cCC--CCHHHHHHHHHhCC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT-----LGM--LNENQAYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~-----~g~--l~~e~l~~Lk~aG~ 169 (348)
.++.++-++.++.+.+.|++.|-.+-. ..++.+.+.+..+.+.-. .+..++.- .+. -.+..++.+.++|.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p--~~s~~d~~~v~~i~~~~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~ 95 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWP--GANPKDVQFFWQLKEMNF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKAET 95 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCChHHHHHHHHHHHhCC-CCcEEEEEeeecCCCCCCchHHHHHHHhcCCC
Confidence 379999999999999999999866421 112234444444432100 13444432 121 22457899999999
Q ss_pred CeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 170 DYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 170 ~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.+.+.+-+++-..+ .++.. ...+...++++.+++.|+.+..... -|.--+++.+.+.++.+.+.+ ++.+.+
T Consensus 96 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG--ad~i~i 173 (526)
T TIGR00977 96 PVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG--ADWLVL 173 (526)
T ss_pred CEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--CCeEEE
Confidence 999988877654443 44432 2455666778999999998754333 343356788889999988887 776543
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee
Q psy14485 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
. .| ....+|.++.+++...|..+|...+.+-+ || +..-....|+.+||+.+
T Consensus 174 ~------DT----vG~~~P~~v~~li~~l~~~~~~~~i~vH~--HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 174 C------DT----NGGTLPHEISEITTKVKRSLKQPQLGIHA--HNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred e------cC----CCCcCHHHHHHHHHHHHHhCCCCEEEEEE--CCCCChHHHHHHHHHHhCCCEE
Confidence 2 34 23567889999999998888753333221 32 11234566899999998
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=51.73 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=132.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEEe----cCCC---CHHHHHHHHH
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLT----LGML---NENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~----~g~l---~~e~l~~Lk~ 166 (348)
.++.++.++.++.+.+.|++.|-++...- +..+. +.++.+.+. +..++.- ...+ .+..++.+.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~a--s~~d~----~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~ 96 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGS--NPKDT----EFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLD 96 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcC--ChhHH----HHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHh
Confidence 38999999999999999999987743211 22233 334444431 3444321 1222 3567889999
Q ss_pred hCCCeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCe
Q psy14485 167 VGLDYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 167 aG~~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
+|++.+.+.+-+++-.. ..++.. ...+...++++.+++.|+.+..+.. =|.-.+++.+.+.++.+.+.+ ++.
T Consensus 97 ~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G--ad~ 174 (524)
T PRK12344 97 AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--ADW 174 (524)
T ss_pred CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--CCe
Confidence 99999999887765433 344432 3566777888999999998765444 122345677788888888887 776
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---ee--CCee
Q psy14485 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FY--GDKL 312 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~--~~~~ 312 (348)
+. .+.|- ...+|.++.+++...+..+ + +.++..-|| ++ .-....|+.+||+.+ +. |+
T Consensus 175 i~------l~DTv----G~~~P~~v~~li~~l~~~~-~--v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE-- 239 (524)
T PRK12344 175 VV------LCDTN----GGTLPHEVAEIVAEVRAAP-G--VPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE-- 239 (524)
T ss_pred EE------EccCC----CCcCHHHHHHHHHHHHHhc-C--CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc--
Confidence 54 34453 4567888888888877665 3 333321232 11 234566899999998 22 22
Q ss_pred ccCCCCCchHHHHHHH-HcCCC
Q psy14485 313 LTTDNTKTNDDSKLLK-KLGIN 333 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~-~~G~~ 333 (348)
.+.+...+++.-.+. ..|+.
T Consensus 240 -RaGNa~lE~lv~~L~~~~g~~ 260 (524)
T PRK12344 240 -RCGNANLCSIIPNLQLKMGYE 260 (524)
T ss_pred -cccCcCHHHHHHHHHhccCCC
Confidence 123344466654444 46763
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.14 Score=45.06 Aligned_cols=182 Identities=10% Similarity=0.084 Sum_probs=103.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCC-HHHHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLN-ENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~-~e~l~~Lk~aG~~~i 172 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. . ..=.++++.+++. .+.+.++...-+ ...++.+.++|.+.+
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-~--tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i 85 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-L--TFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMI 85 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-c--ccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEE
Confidence 345677788888888899988763 3322221 1 1122444555442 344444444333 456889999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+-+|+.+ ...++++.+|++|++. ++-+..+...+.+...+ +. .+.+-++... ||+
T Consensus 86 ~~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l----~~---~D~vlvMtV~--PGf 141 (220)
T PRK08883 86 TFHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIM----DK---VDLILLMSVN--PGF 141 (220)
T ss_pred EEcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHH----Hh---CCeEEEEEec--CCC
Confidence 99888631 2445678888899865 44444443334333222 22 5677777665 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.-+..-+ ..++.+..+|.+.++ ..|.+-+| +..+.......+|||.++.|..+.
T Consensus 142 gGq~fi~----~~lekI~~l~~~~~~~~~~~~I~vdGG---I~~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 142 GGQSFIP----HTLDKLRAVRKMIDESGRDIRLEIDGG---VKVDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred CCceecH----hHHHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEeHHHh
Confidence 3222222 233344444544442 22444343 223444557899999998887553
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.18 Score=44.66 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
+.-.+.++++.+.+ |++.+++- +|-+-| ... .=.++++.+++ ..+.+.++.... +...++.+.++|.+.+.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVP-N~t--fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVP-NLT--LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCC-Ccc--cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 34566677777766 88888663 332222 111 11234555554 233444444333 345788999999999999
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.|+.. ....++++.+|++|++. ++-+..+...+.+...+. . +|.|-++...| |-.
T Consensus 89 H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~----~---vD~VLvMsV~P--Gf~- 144 (229)
T PRK09722 89 HPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIH----L---LDKITVMTVDP--GFA- 144 (229)
T ss_pred CccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHH----h---cCEEEEEEEcC--CCc-
Confidence 888631 12336788889999875 444444444444433332 2 56777777664 422
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
.+. . ..+.++-+..+|.+++. ..|.+-+| +..+.......+|||.++.|.+
T Consensus 145 -GQ~-f-i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 145 -GQP-F-IPEMLDKIAELKALRERNGLEYLIEVDGS---CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred -chh-c-cHHHHHHHHHHHHHHHhcCCCeEEEEECC---CCHHHHHHHHHcCCCEEEEChH
Confidence 121 1 12445555556655543 22555443 2234445678899999988854
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.22 Score=49.23 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=125.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC-----------cEEEEecCCCCHHHHHHHH
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG-----------LETCLTLGMLNENQAYRLK 165 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~-----------~~i~~~~g~l~~e~l~~Lk 165 (348)
.++.++-++.++.+.+.|++.|-++. |... +...+.++.+.+.. ..+. ..+....+.++.-.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~s--~~e~e~i~~i~~~~~~~~~~~~~l~~~i~-a~~R~~~~dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF----PGSS--EEEFEAVKTIAKTVGNEVDEETGYVPVIC-GIARCKKRDIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--HHHHHHHHHHHHhcccccccccccceEEe-eecccCHhhHHHHH
Confidence 47999999999999999999886633 2111 22233344443321 1121 22333444555555
Q ss_pred Hh----CCCeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCC
Q psy14485 166 KV----GLDYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 166 ~a----G~~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~ 237 (348)
++ |++++.+.+-+++... ..++.. ...+...++++.+++.|+. +..+.-.+.--+++.+.+.++.+.+.+
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G-- 252 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG-- 252 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC--
Confidence 55 7888988777765443 345432 3566777889999999985 333332222223555677777888887
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e--
Q psy14485 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y-- 308 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~-- 308 (348)
++.+. .+.| ....+|.++.+++...|..+|+. .+.++..-|| +..-....|+.+||+.+- .
T Consensus 253 ad~I~------l~DT----vG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~Gi 322 (503)
T PLN03228 253 ATSVG------IADT----VGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGI 322 (503)
T ss_pred CCEEE------EecC----CCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccc
Confidence 66542 2334 24567888899998888877753 2333322232 112345668999999982 2
Q ss_pred CCeeccCCCCCchHHHHHHHHc
Q psy14485 309 GDKLLTTDNTKTNDDSKLLKKL 330 (348)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~i~~~ 330 (348)
|+ .+.+...+++...++..
T Consensus 323 GE---RaGNa~lEevv~~L~~~ 341 (503)
T PLN03228 323 GE---RSGNASLEEVVMALKCR 341 (503)
T ss_pred cc---ccCCccHHHHHHHHHhc
Confidence 22 12334456777777664
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.19 Score=43.55 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=97.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCH--HHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNE--NQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~--e~l~~Lk~aG~~~i~ 173 (348)
.++++.++.++.+ +.|++.|-++.. ...+.=.+.++.+++. +..+-+..-.++. ..++.+.++|.+.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTP------LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCH------HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 4678888888887 677877655321 1112224556666553 3333333222333 368999999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..++.+ ....+.++.+++.|+.+... +.+. .| ..+.+..+.+++ ++.+.++ ||+.
T Consensus 82 vh~~~~~------------~~~~~~i~~~~~~g~~~~~~-~~~~-~t---~~~~~~~~~~~g--~d~v~~~-----pg~~ 137 (206)
T TIGR03128 82 VLGVADD------------ATIKGAVKAAKKHGKEVQVD-LINV-KD---KVKRAKELKELG--ADYIGVH-----TGLD 137 (206)
T ss_pred EeccCCH------------HHHHHHHHHHHHcCCEEEEE-ecCC-CC---hHHHHHHHHHcC--CCEEEEc-----CCcC
Confidence 7665421 33456788899999877554 2222 23 223334445566 7777553 2322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
-....+... +.+...+..++...+.+.+|- ..+.....+.+||+.+..|..+
T Consensus 138 ~~~~~~~~~----~~i~~l~~~~~~~~i~v~GGI---~~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 138 EQAKGQNPF----EDLQTILKLVKEARVAVAGGI---NLDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred cccCCCCCH----HHHHHHHHhcCCCcEEEECCc---CHHHHHHHHHcCCCEEEEeehh
Confidence 111222222 233344444555445444432 2233345678999999887655
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.19 Score=43.71 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCC-HHHHHHHHHhCCCeeecc
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~-~e~l~~Lk~aG~~~i~~g 175 (348)
+...+-++++.+.+.|++.+++-=- +..-+ +.-.=..+++.+++. ...+.++...-+ ...++.+.++|.+.+++-
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVP--NiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H 91 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVP--NITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFH 91 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCC--CcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEE
Confidence 4456667777888889999876321 11111 222223455555542 344444444333 467899999999999988
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+|+++ ...++++.+|+.|.+....+= -+|+-+.++.+ .+. +|.+-++...|--|
T Consensus 92 ~E~~~-------------~~~r~i~~Ik~~G~kaGv~ln---P~Tp~~~i~~~---l~~---vD~VllMsVnPGfg---- 145 (220)
T COG0036 92 AEATE-------------HIHRTIQLIKELGVKAGLVLN---PATPLEALEPV---LDD---VDLVLLMSVNPGFG---- 145 (220)
T ss_pred eccCc-------------CHHHHHHHHHHcCCeEEEEEC---CCCCHHHHHHH---Hhh---CCEEEEEeECCCCc----
Confidence 87432 234567788888887654422 34554433332 222 57888887776432
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CceeccccccccchhhHHHHHHhCcceeeeCCeeccC
Q psy14485 256 GSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 315 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~---~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~ 315 (348)
.+.. ..+.+.-+..+|-+++. ..|.+-+| +..+....+..+|||.++.|..+...
T Consensus 146 GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDGG---I~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 146 GQKF--IPEVLEKIRELRAMIDERLDILIEVDGG---INLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred cccc--CHHHHHHHHHHHHHhcccCCeEEEEeCC---cCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 2221 13566666777777774 23555443 33455666788999999988865433
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.13 Score=49.58 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=125.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecC---CCCHHHHHHHHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLG---MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g---~l~~e~l~~Lk~aG~~~i 172 (348)
.+++++-++.++.+.+.|+..|-.+.. ..+ ++-.+.++.+. ..+..+++... ...+..++.+.++|++++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p--~~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFP--VAS----PGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCC--cCC----hhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEE
Confidence 479999999999999999999866433 112 23334444444 22331121111 223457999999999999
Q ss_pred eccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+-+-|++-..+ .++.. ...+...++++.+++.|+.+..+..-...-+++.+.+.++.+.+.+ .+.|.+
T Consensus 94 ~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~l------ 165 (409)
T COG0119 94 HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRINL------ 165 (409)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEEE------
Confidence 988888654443 33322 2566777889999999988776655555677888889988888776 555432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI 306 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~ 306 (348)
+.|- ...+|.++..++...+..+|+ .+.++..-|| ++ --....|+.+||+.+
T Consensus 166 ~DTv----G~~~P~~~~~~i~~l~~~v~~-~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 166 PDTV----GVATPNEVADIIEALKANVPN-KVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred CCCc----CccCHHHHHHHHHHHHHhCCC-CCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 4442 346788999999999988885 2333321132 11 234567899999998
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.036 Score=53.23 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCH-HHHHHHHH
Q psy14485 152 TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESR-DQRAELIF 229 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~-e~~~~~l~ 229 (348)
+...++++.+++..+.+++-+++++.| ++++..++-+.....+.++.++++.++|+.+.+.+++=.|-+. +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 345689999999999999999999999 7999998877778999999999999999988776555334443 67889999
Q ss_pred HHHhcCC--CCCeeecccccccCCCCCC----CCCCCCHHHHHHHHHHH
Q psy14485 230 QLANLNP--YPESVPINNLVQIKGTPLY----GSSILDPLEFIRTIAVA 272 (348)
Q Consensus 230 ~l~~l~~--~~~~i~~~~l~P~~gT~l~----~~~~~~~~~~~~~~a~~ 272 (348)
.|.+++. .|...++ ..+|..=|.+. ...+.+.++..+++...
T Consensus 202 dL~~~~~~~~P~v~S~-avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSV-AVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHhhcccCCCceeEE-EEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9998821 1333232 23565555543 33566777666666554
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.25 Score=43.74 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC-CHHHHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML-NENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l-~~e~l~~Lk~aG~~~i 172 (348)
.++-.+.++++.+.+.|++.+++- +|-+-|. . ..=.++++.+++. .+.+.++.-.- ....++.+.++|++.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-~--~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-L--SFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-c--CcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEE
Confidence 345677788888888999998763 3322221 1 1123555666553 33333333333 3456789999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
++-.|+... ...++++.+++.|..+...+. .....+++. .+.+.. .++.|-+... .||.
T Consensus 93 tvH~ea~~~------------~~~~~l~~ik~~G~~~gval~--p~t~~e~l~----~~l~~~-~vD~Vl~m~v--~pG~ 151 (228)
T PTZ00170 93 TFHIEATED------------DPKAVARKIREAGMKVGVAIK--PKTPVEVLF----PLIDTD-LVDMVLVMTV--EPGF 151 (228)
T ss_pred EEeccCCch------------HHHHHHHHHHHCCCeEEEEEC--CCCCHHHHH----HHHccc-hhhhHHhhhc--ccCC
Confidence 986665311 144678888889976654433 222333332 222111 1445444333 3443
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. .+ ... ...+.-+..+|...+...|.+.+| +..+.-..+..+|||.++.|..+
T Consensus 152 ~--gq-~~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 152 G--GQ-SFM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred C--Cc-Eec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEchHH
Confidence 2 11 111 233444455566677666766664 22344456788999999888655
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.056 Score=50.80 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=119.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhc-------CcEEE-E--ecCCCCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKI-------GLETC-L--TLGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~-------~~~i~-~--~~g~l~~e~l 161 (348)
+..++++-.++.+.+.|+.++-+-||-+.. ...+++++.++=+.++.. |-++- . -+..+-+..+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 567888888999989999998776662211 112344444443333322 21110 0 1223444566
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|+|.+. +|+.++ +......+++.+++.|..+...+.|-. -+|.+-+++..+.+.+++ ++
T Consensus 105 ~ka~~nGidvfR--------iFDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFR--------IFDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEE--------echhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 777778988664 566654 445556778889999998877777766 799999999999999999 88
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc-ccccchhhHHHHHHhCccee
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG-RKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g-~~~l~~~~~~~~l~~GAn~~ 306 (348)
+|.+--. ....++.+..+++...+..++ ..+.+-+. ...+..-....++.||||.+
T Consensus 172 SIciKDm----------aGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 172 SICIKDM----------AGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred EEEeecc----------cccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 8765321 134677888889999988887 33332110 01122334456899999998
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.16 Score=46.30 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=98.1
Q ss_pred ceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc------cHHH
Q psy14485 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR------DLDN 134 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~------~~~~ 134 (348)
+..+.+++|+ |+- +|+. . .+| .+++++++.++.+.+.|+.-|=++|..+.|... ..++
T Consensus 14 ~~~imGIlNv-TpD--------SFsd---g--g~~--~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~R 77 (282)
T PRK11613 14 HPHVMGILNV-TPD--------SFSD---G--GTH--NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDR 77 (282)
T ss_pred CceEEEEEcC-CCC--------CCCC---C--CCC--CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHH
Confidence 3456677777 443 3332 1 233 589999999999999999988887653333221 3345
Q ss_pred HHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeee--ccCCCCHHHHhcc----------CC---CCC-------
Q psy14485 135 IENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYN--HNLDTSPKLYGDI----------IS---TRD------- 191 (348)
Q Consensus 135 ~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~--~g~et~~e~l~~i----------~~---~~~------- 191 (348)
+..+++.+++. ++ .++..+...+.++.--++|++-|+ .|+. .+++++.+ +. +.+
T Consensus 78 v~pvI~~l~~~~~~--~ISIDT~~~~va~~AL~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y 154 (282)
T PRK11613 78 VIPVVEAIAQRFEV--WISVDTSKPEVIRESAKAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKY 154 (282)
T ss_pred HHHHHHHHHhcCCC--eEEEECCCHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCc
Confidence 66677777753 44 457888888888888888888764 1332 23433311 10 011
Q ss_pred -------HHHHHHHHHHHHHcCC---eeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 192 -------YENRLNTLKNVRNVGI---NICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 192 -------~~~~~~~i~~~~~~G~---~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.+...+.++.+.++|+ ++..+--+|++.+.++-.+.+..+..+
T Consensus 155 ~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 155 DDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHH
Confidence 1344566788889999 677777788888887766665555444
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.41 Score=48.65 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=130.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C-cEEEEecCCCCHHHHHHHHHhC--C
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G-LETCLTLGMLNENQAYRLKKVG--L 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~-~~i~~~~g~l~~e~l~~Lk~aG--~ 169 (348)
.++.++-++.++.+.+.|++.|-.+.- ..+..+.+.+..+.+.+... . +..-+..+....+.++.-.+++ .
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP--~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a 181 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFP--IASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHA 181 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCc--CCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCC
Confidence 389999999999999999999877432 12234555555554443221 0 1212234445566677777763 3
Q ss_pred --CeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 170 --DYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 170 --~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
.++.+.+-+++-.. ..++.. ...+...++++.+++.|.. +..+.-.+.--+++.+.+.++.+.+.+ ++.|.
T Consensus 182 ~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~I~- 258 (632)
T PLN02321 182 KRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATTLN- 258 (632)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCEEE-
Confidence 35776665665433 344432 2455566788888999874 444443333345777888888888887 66543
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCC
Q psy14485 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTD 316 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~ 316 (348)
.+.|- ...+|.++.+++...+..+|.. .+.++..-|| +..-....|+.+||+.+ +.|-- -.+.
T Consensus 259 -----L~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-ERaG 328 (632)
T PLN02321 259 -----IPDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-ERAG 328 (632)
T ss_pred -----ecccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-cccc
Confidence 24442 3456788999999988888753 2444422233 22234566899999998 22210 0233
Q ss_pred CCCchHHHHHHHHcC
Q psy14485 317 NTKTNDDSKLLKKLG 331 (348)
Q Consensus 317 g~~~~~~~~~i~~~G 331 (348)
+...+++.-+++..|
T Consensus 329 Na~LEevv~~L~~~~ 343 (632)
T PLN02321 329 NASLEEVVMAIKCRG 343 (632)
T ss_pred CccHHHHHHHHHhcc
Confidence 444567777776533
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.35 Score=43.57 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+|.++. +.+.+.|++.+++.+-... ......-.++++.+.+ .++++.+..|..+.+.++.+.++|++++.+|-.
T Consensus 31 dp~~~a---~~~~~~G~~~l~v~Dl~~~--~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 31 DPVELA---QRYDEEGADELVFLDITAS--SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred CHHHHH---HHHHHcCCCEEEEEcCCcc--cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 454544 4556789999988764211 1122334566666655 468888899999999999999999999988764
Q ss_pred C--CHHHHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeE--------------eeec-CCCHHHHHHHHHHHHhcCCC
Q psy14485 178 T--SPKLYGDIISTRDYENRLNTLKNVRNVG---INICCGG--------------IIGL-SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 178 t--~~e~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~--------------i~Gl-get~e~~~~~l~~l~~l~~~ 237 (348)
. ++++++.+ .+ ..| +-++.++ +-|- .++..+..+.++.+.+.+
T Consensus 106 ~~~~p~~~~~~------------~~---~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G-- 168 (254)
T TIGR00735 106 AVKNPELIYEL------------AD---RFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG-- 168 (254)
T ss_pred HhhChHHHHHH------------HH---HcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--
Confidence 4 23333322 11 123 2233332 1222 334566777778888887
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhC-cceeeeCCeeccCC
Q psy14485 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAG-ANSIFYGDKLLTTD 316 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~G-An~~~~~~~~~~~~ 316 (348)
.+.+.++... ..|| .+.++. .++...+... +..+-+++|-.. .+.....+..| |+.++.|..+ ...
T Consensus 169 ~~~iivt~i~-~~g~----~~g~~~----~~~~~i~~~~-~ipvia~GGi~s--~~di~~~~~~g~~dgv~~g~a~-~~~ 235 (254)
T TIGR00735 169 AGEILLTSMD-KDGT----KSGYDL----ELTKAVSEAV-KIPVIASGGAGK--PEHFYEAFTKGKADAALAASVF-HYR 235 (254)
T ss_pred CCEEEEeCcC-cccC----CCCCCH----HHHHHHHHhC-CCCEEEeCCCCC--HHHHHHHHHcCCcceeeEhHHH-hCC
Confidence 7887776543 2444 122332 2222233322 223334443222 22233456666 9998776533 222
Q ss_pred CCCchHHHHHHHHcCCCc
Q psy14485 317 NTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 317 g~~~~~~~~~i~~~G~~p 334 (348)
.-+..+..+.+++.|+.+
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 334678889999999864
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.66 Score=46.75 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=127.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHH----HHHHHHhCCCe
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQ----AYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~----l~~Lk~aG~~~ 171 (348)
.+++++=++.++.+.+.|++.|-.+ +..++..+.+.+..+++... ..+..+++ .....++. ++.+..++..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~~s~~D~e~v~~i~~~~l~~~~~~i~a-l~~~~~~did~a~~a~~~~~~~~ 120 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVG--FPSASQTDFDFVREIIEQGAIPDDVTIQV-LTQSREELIERTFEALSGAKRAT 120 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHhcCCCCCcEEEE-EcCCchhhHHHHHHHhcCCCCCE
Confidence 4889999999999999999998764 22333233333333333210 01344432 22222233 33444444457
Q ss_pred eeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee----e--EeEeeecC----CCHHHHHHHHHHHHhcCCCC
Q psy14485 172 YNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI----C--CGGIIGLS----ESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 172 i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i----~--~~~i~Glg----et~e~~~~~l~~l~~l~~~~ 238 (348)
|.+.+-+++-..+ .++.. ...+...++++.+++.|... . ..+.|+.. -.++.+.+.++.+.+.+ .
T Consensus 121 v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag--~ 198 (564)
T TIGR00970 121 VHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVW--A 198 (564)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhC--C
Confidence 8887777654443 34432 24455566777788887632 2 24455542 24677788888888876 3
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e--C
Q psy14485 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--G 309 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~ 309 (348)
....--..+-.|.|- ...+|.++.+++..++..+|+. .+.++..-|| +.--....|+.+||+.+= . |
T Consensus 199 ~~~~~~~~i~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~G 274 (564)
T TIGR00970 199 PTPERPIIFNLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNG 274 (564)
T ss_pred CccCCeeEEEecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCC
Confidence 211100111234553 4568889999999998888763 3444432233 112345668999999982 1 2
Q ss_pred CeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 310 DKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 310 ~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+ .+.+...+++.-++...|+.+
T Consensus 275 E---RaGNa~le~lv~~L~~~g~~t 296 (564)
T TIGR00970 275 E---RTGNVDLVTLALNLYTQGVSP 296 (564)
T ss_pred c---cccCccHHHHHHHHHhcCCCC
Confidence 2 133344567777777778653
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.43 Score=40.46 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCC-CHHHHHHHHHhCCCee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI---GLETCLTLGML-NENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l-~~e~l~~Lk~aG~~~i 172 (348)
+...+.+++..+.+.|++.+++. +| +.-+..++ =--+++.+++. ..-+-++.-.. +++.++.+.++|++.+
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg-~FVpNiT~--G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~ 91 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDG-HFVPNITF--GPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLF 91 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecc-cccCCccc--chHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceE
Confidence 45667788888889999998763 22 21122221 12345566552 21123333333 3467899999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+-.|..+ ++.+.++.+++.|+.+.+-+= .|...+++...+. . .|.+-++..-| |
T Consensus 92 tfH~E~~q-------------~~~~lv~~ir~~Gmk~G~alk--PgT~Ve~~~~~~~----~---~D~vLvMtVeP--G- 146 (224)
T KOG3111|consen 92 TFHYEATQ-------------KPAELVEKIREKGMKVGLALK--PGTPVEDLEPLAE----H---VDMVLVMTVEP--G- 146 (224)
T ss_pred EEEEeecc-------------CHHHHHHHHHHcCCeeeEEeC--CCCcHHHHHHhhc----c---ccEEEEEEecC--C-
Confidence 98776532 256778899999998765432 2444455443332 2 56776666654 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHH
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
|..+.- -++++.-+...|.-.|+..|.+-+| +++.....+..||||-++.|.-+.... .+.+.+..|++
T Consensus 147 -FGGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a~--d~~~vi~~lr~ 215 (224)
T KOG3111|consen 147 -FGGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGAA--DPSDVISLLRN 215 (224)
T ss_pred -Cchhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecCC--CHHHHHHHHHH
Confidence 222221 2466677778888899988887664 334556678899999998887553322 23455555543
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.19 Score=45.40 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=113.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
..+.+.+++.++...+.|..-+=++++ . +.....+.+..+++.+++. +++ ++..+...+.++.-.++ |.+-|+
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~-~-~~~eE~~r~~~~v~~l~~~~~~p--lsIDT~~~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAG-T-AVEEEPETMEWLVETVQEVVDVP--LCIDSPNPAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCC-C-CchhHHHHHHHHHHHHHHhCCCC--EEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 467889999999999999998888766 2 2234567888888888763 544 47788888888877777 876555
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHH----HHhcCCCCCeeeccccc
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQ----LANLNPYPESVPINNLV 247 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~----l~~l~~~~~~i~~~~l~ 247 (348)
++ .... +...+.+..++++|..+..-.+ -|.-+|.++..+.+.. +.+.+ +. -..++
T Consensus 97 -sI----------s~~~--~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G--I~---~~~Ii 158 (261)
T PRK07535 97 -SV----------SAEG--EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG--IP---PEDIY 158 (261)
T ss_pred -eC----------CCCC--ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC--CC---HhHEE
Confidence 11 1100 1122446667788887654334 3554566555444433 44444 21 12233
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-----cc---ccccccchhhHHHHHHhCcceeeeC
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR-----MS---AGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-----~s---~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
.-||.-......-...+.++.+...+..+|+..+- .| +.|+.+..-+-.+++.+|.|.-+.+
T Consensus 159 lDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 159 IDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred EeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeC
Confidence 33443211111223456677777777777753322 22 2244444556677888999887553
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.018 Score=49.95 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
+.-.+.++++.+.+.|+..+++ -+|-.-|.. ..=.++++.+++ ..+.+.++...- +...++.+.++|.+.+++
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~---~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~ 86 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL---TFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITF 86 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB----B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCcc---cCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEE
Confidence 4456677778888889998865 334222221 122345555555 334444443322 346799999999999998
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-+|+.+ +..++++.++++|+++... +..+ |+- +.+..+.+. ++.+-++...| |..
T Consensus 87 H~E~~~-------------~~~~~i~~ik~~g~k~Gia--lnP~-T~~---~~~~~~l~~---vD~VlvMsV~P--G~~- 141 (201)
T PF00834_consen 87 HAEATE-------------DPKETIKYIKEAGIKAGIA--LNPE-TPV---EELEPYLDQ---VDMVLVMSVEP--GFG- 141 (201)
T ss_dssp EGGGTT-------------THHHHHHHHHHTTSEEEEE--E-TT-S-G---GGGTTTGCC---SSEEEEESS-T--TTS-
T ss_pred cccchh-------------CHHHHHHHHHHhCCCEEEE--EECC-CCc---hHHHHHhhh---cCEEEEEEecC--CCC-
Confidence 887531 2345678888899877444 3333 332 222223222 67887777654 532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+ .=..+.++-++.+|.+.+. ..|.+-+| +..+.......+|||.++.|..+
T Consensus 142 -Gq--~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 142 -GQ--KFIPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp -SB----HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESHHH
T ss_pred -cc--cccHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECHHH
Confidence 22 1223455666666666554 34555554 22334455778999999887543
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.86 Score=42.56 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=124.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHH----HHHHHHHh
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNEN----QAYRLKKV 167 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e----~l~~Lk~a 167 (348)
.++++|=++.++.+.+.|++.|-.+-- ..+..+ .+.++.|.+. +..+++-. ....+ .++...++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~P--a~s~~e----~e~ir~I~~~~~~~~~~~i~~~~-r~~~~dId~a~e~~~~~ 122 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFP--SASQTD----FDFVRKLIDERRIPDDVTIEALT-QSRPDLIARTFEALAGS 122 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC--CCCHHH----HHHHHHHHHhCCCCCCcEEEEEe-cCcHHHHHHHHHHhCCC
Confidence 378999999999999999999866321 112222 3444555433 23443322 22233 34444455
Q ss_pred CCCeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee---eEeEeeec-CCC---HHHHHHHHHHHHhc-CC
Q psy14485 168 GLDYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI---CCGGIIGL-SES---RDQRAELIFQLANL-NP 236 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i---~~~~i~Gl-get---~e~~~~~l~~l~~l-~~ 236 (348)
+..+|.+.+-+++-..+ .++.. .-.+...++++.+++.|... ...+-||. .-+ .+-+.+..+.+.+. +
T Consensus 123 ~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~g- 201 (333)
T PRK14847 123 PRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWG- 201 (333)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhC-
Confidence 56779999988766554 34322 23344557788888886631 12456666 333 34444444544333 4
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e-
Q psy14485 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y- 308 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~- 308 (348)
++......+. .+.|- ...+|.++.+.+...+..+++. .+.++..-|| +.......|+.+||+.+- .
T Consensus 202 -a~r~~a~~i~-l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G 275 (333)
T PRK14847 202 -PTPQRKMIIN-LPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFG 275 (333)
T ss_pred -CCccCCcEEE-eCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCc
Confidence 4443333322 24442 4567788888888777666541 2444422232 223345668999999982 1
Q ss_pred -CCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 309 -GDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 309 -~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
|+ ...+...+++...+...|+..
T Consensus 276 ~GE---RaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 276 NGE---RTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred CCc---cccchhHHHHHHHHHhcCCCC
Confidence 22 123344577777777778763
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.56 Score=42.72 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=119.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CC-CCCcccHHHHHHHHHHHHhc--CcEEEEecCC---CC-HHHHHHHHHhC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAA-WR-ELKDRDLDNIENMICEVKKI--GLETCLTLGM---LN-ENQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~-~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~---l~-~e~l~~Lk~aG 168 (348)
-.+++||.+.+..+.+.|..-+++-.- .. .-...+.+.+.++++.|++. ++-+.++.|. .+ ++.++.+....
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 378999999999999999888776432 11 11246889999999999985 6777766553 23 34555555556
Q ss_pred CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 169 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 169 ~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
-+..++++.+ +-. .....-..+.+...+.++.+++.|+.+... +| +..++. .+..+.+.+.-...+.+..+.
T Consensus 102 pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~e-v~----d~~~l~-~~~~l~~~G~l~~p~~~~~vl 174 (272)
T PF05853_consen 102 PDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKPEIE-VF----DPGHLR-NARRLIEKGLLPGPLLVNFVL 174 (272)
T ss_dssp -SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EEEEE-ES----SHHHHH-HHHHHHHTTSS-SSEEEEEEE
T ss_pred CCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeEEEE-EE----cHHHHH-HHHHHHHCCCCCCCeEEEEcc
Confidence 7778877766 311 111111357889999999999999987665 33 344443 334444445211122222221
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc-ccccccchhhHHHHHHhCcceeee-CCeeccCCCCC------
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS-AGRKEMGETTQAFCFLAGANSIFY-GDKLLTTDNTK------ 319 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s-~g~~~l~~~~~~~~l~~GAn~~~~-~~~~~~~~g~~------ 319 (348)
|.+ . -.+++++.+..++..... +....+. .|+.. -.....++..|.|.=++ ++++.-..|..
T Consensus 175 ---G~~-~-g~~~~~~~l~~~l~~l~~---~~~w~v~~~g~~~--~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNae 244 (272)
T PF05853_consen 175 ---GVP-G-GMPATPENLLAMLDMLPE---GAPWSVCGIGRNQ--WPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNAE 244 (272)
T ss_dssp ---S-T-T-S--S-HHHHHHHHHHHHH---TEEEEEEE-GGGH--HHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHH
T ss_pred ---cCC-C-CCCCCHHHHHHHHHhcCC---CCcEEEEccchhh--HHHHHHHHHcCCceEEecCccccCCCCCCCcCHHH
Confidence 433 2 225677777766665554 3322222 22222 23456678888885433 33332334432
Q ss_pred -chHHHHHHHHcCCCchh
Q psy14485 320 -TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 320 -~~~~~~~i~~~G~~p~~ 336 (348)
.+...++++++|++|..
T Consensus 245 lV~~a~~ia~~~grevAt 262 (272)
T PF05853_consen 245 LVERAVRIARELGREVAT 262 (272)
T ss_dssp HHHHHHHHHHHTT-EB--
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 24678899999998764
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.5 Score=40.17 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=124.5
Q ss_pred cCHHHHHHHHHHHHhCC-----CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDG-----ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
.+.++=++.++.+.+.| ++.|-+. . ....+.+.+.++++.-. ....++.. .....+.++...++|++.+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s---~~~~d~~~v~~~~~~~~-~~~~v~~~-~r~~~~die~A~~~g~~~v 91 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFF-L---YTEKDREAVEACLDRGY-KFPEVTGW-IRANKEDLKLVKEMGLKET 91 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEec-C---cChHHHHHHHHHHHcCC-CCCEEEEE-ecCCHHHHHHHHHcCcCEE
Confidence 38888889999999999 9998662 2 12233344444432110 02345444 4556777899999999999
Q ss_pred eccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCH-HHHHHHHHHHH----hcCCCCC-eee
Q psy14485 173 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGL-SESR-DQRAELIFQLA----NLNPYPE-SVP 242 (348)
Q Consensus 173 ~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~-e~~~~~l~~l~----~l~~~~~-~i~ 242 (348)
.+.+-+++... +.+++. ...+...+.++.+++.|+.+..++ -|. -.+. +.+++.+..+. +.+ .+ .+.
T Consensus 92 ~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~i~ 168 (279)
T cd07947 92 GILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVKIR 168 (279)
T ss_pred EEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEEEE
Confidence 99876675544 355543 356677788899999999877664 233 2222 11223333333 355 55 343
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeecc
Q psy14485 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARIT--MPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLT 314 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~--lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~ 314 (348)
+.=-+ --.||+.. ...+.+..+++...|.. +|...+.+- -|| +..-....++.+||+.+ +.|-- -.
T Consensus 169 l~DTv-G~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H--~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlG-e~ 242 (279)
T cd07947 169 LCDTL-GYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWH--GHNDFYKAVANAVAAWLYGASWVNCTLLGIG-ER 242 (279)
T ss_pred eccCC-CcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEE--ecCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 22111 11233211 11246677777777665 444333221 122 22334556899999988 21110 01
Q ss_pred CCCCCchHHHHHHHHc-CCCc
Q psy14485 315 TDNTKTNDDSKLLKKL-GINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~-G~~p 334 (348)
+.+...++...+++.+ |+.+
T Consensus 243 aGN~~tE~lv~~l~~~~g~~t 263 (279)
T cd07947 243 TGNCPLEAMVIEYAQLKGNFD 263 (279)
T ss_pred ccchhHHHHHHHHHHhcCCCC
Confidence 2334457888888887 8764
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.9 Score=47.29 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=129.1
Q ss_pred cCHHHHHHHHHHHHhC--CCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHH
Q psy14485 98 LSIESVITAAQKAKSD--GATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e 159 (348)
++.++.+..+..+.+. |+..+-+.||.+. ....+++++..+-+.+....+...+. ++.+..+
T Consensus 552 ~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~ 631 (1146)
T PRK12999 552 VRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRA 631 (1146)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHH
Confidence 6789999999999998 9999877775211 11223445544444443322222221 4456667
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee------c--CCCHHHHHHHHHHH
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG------L--SESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G------l--get~e~~~~~l~~l 231 (348)
.++...++|++.+.+.. + -...+....+++.++++|......+-|= . ..+.+.+++..+.+
T Consensus 632 ~i~~a~~~Gid~~rifd-~----------lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 632 FVREAAAAGIDVFRIFD-S----------LNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred HHHHHHHcCCCEEEEec-c----------CChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999887642 1 1234567788999999986433332222 1 25888888999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeee
Q psy14485 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~ 308 (348)
.+++ .+.+.+ +.| ....+|.+..+++...|..+ +..|.+- .|+ +..-....|+.+||+.+-.
T Consensus 701 ~~~G--a~~i~i------kDt----~G~l~P~~~~~lv~~lk~~~-~ipi~~H--~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 701 EKAG--AHILAI------KDM----AGLLKPAAAYELVSALKEEV-DLPIHLH--THDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred HHcC--CCEEEE------CCc----cCCCCHHHHHHHHHHHHHHc-CCeEEEE--eCCCCchHHHHHHHHHHhCCCEEEe
Confidence 9888 665543 222 23467888889999888766 2223221 121 1223445689999999821
Q ss_pred CCe-ec-cCCCCCchHHHHHHHHcCCCc
Q psy14485 309 GDK-LL-TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 309 ~~~-~~-~~~g~~~~~~~~~i~~~G~~p 334 (348)
-.. +. .+.++..+++...++..|+..
T Consensus 766 av~glg~~tgn~~le~vv~~L~~~~~~t 793 (1146)
T PRK12999 766 AVASMSGLTSQPSLNSIVAALEGTERDT 793 (1146)
T ss_pred cchhhcCCcCCHHHHHHHHHHHhcCCCC
Confidence 100 00 122333577888888888863
|
|
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.99 Score=41.10 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc------cHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDR------DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~------~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+++.++.+.+.|+.-|=++|..+.|... ..+++..+++.+++.+. .++..+...+.++.--++|++-
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGadi 99 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVGY 99 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCCE
Confidence 689999999999999999999888754434222 35567788888887544 3578888999999888999886
Q ss_pred eeccCCC--CHHHHh---c-------cC----CC-------CCHH--------HHHHHHHHHHHcCC---eeeEeEeeec
Q psy14485 172 YNHNLDT--SPKLYG---D-------II----ST-------RDYE--------NRLNTLKNVRNVGI---NICCGGIIGL 217 (348)
Q Consensus 172 i~~g~et--~~e~l~---~-------i~----~~-------~~~~--------~~~~~i~~~~~~G~---~i~~~~i~Gl 217 (348)
|+ .+.. .+++++ . ++ ++ ..++ ...+.++.+.++|+ ++..+-=+|+
T Consensus 100 IN-DVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF 178 (279)
T PRK13753 100 LN-DIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGF 178 (279)
T ss_pred EE-eCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCC
Confidence 65 2222 344432 1 11 10 0122 22344666778898 4666665666
Q ss_pred --CCCHHHHHHHHHHHHhc
Q psy14485 218 --SESRDQRAELIFQLANL 234 (348)
Q Consensus 218 --get~e~~~~~l~~l~~l 234 (348)
+.|.++=++.+..+.++
T Consensus 179 ~k~k~~~~n~~ll~~l~~l 197 (279)
T PRK13753 179 FLSPAPETSLHVLSNLQKL 197 (279)
T ss_pred CCCCChHHHHHHHHhHHHH
Confidence 34766655555554444
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.82 Score=41.25 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--c----cHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD--R----DLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~----~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++++.++...+.|+.-|=++|..+.|.. . ..+++..+++.+++. ++.+ +..+...+.++.--++|++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl--siDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI--SVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCCHHHHHHHHHcCCC
Confidence 68999999999999999999888654332211 1 233577777888764 6554 5666777777777777877
Q ss_pred eee
Q psy14485 171 YYN 173 (348)
Q Consensus 171 ~i~ 173 (348)
-|+
T Consensus 98 iIN 100 (257)
T TIGR01496 98 IIN 100 (257)
T ss_pred EEE
Confidence 665
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.52 Score=42.53 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=84.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+.+++++.+.+..+.|+.-|=+++..+.|.. ...+++..+++.+++. ++. ++..+...+.++.--++|++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p--lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL--ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc--EEEeCCCHHHHHHHHHhCCC
Confidence 68999999999999999998888764332311 1234666677777764 444 47778888888877778877
Q ss_pred eee-ccCCC-CHHHHhcc----------CC---CCC----------HHH----HHHHHHHHHHcCC---eeeEeEeeecC
Q psy14485 171 YYN-HNLDT-SPKLYGDI----------IS---TRD----------YEN----RLNTLKNVRNVGI---NICCGGIIGLS 218 (348)
Q Consensus 171 ~i~-~g~et-~~e~l~~i----------~~---~~~----------~~~----~~~~i~~~~~~G~---~i~~~~i~Glg 218 (348)
-|+ ++.+. .+++++.+ +. +.+ .++ ..+.++.+.++|+ ++..+-.+|++
T Consensus 99 iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ 178 (257)
T cd00739 99 IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFG 178 (257)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcc
Confidence 666 44444 24454311 11 001 122 3455666778888 57777777786
Q ss_pred CCHHHHHHHHHHHHhc
Q psy14485 219 ESRDQRAELIFQLANL 234 (348)
Q Consensus 219 et~e~~~~~l~~l~~l 234 (348)
.+.++-.+.++.++.+
T Consensus 179 ks~~~~~~~l~~i~~l 194 (257)
T cd00739 179 KTPEHNLELLRRLDEL 194 (257)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6655545555444444
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.8 Score=38.53 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
+..+.++.+.+.|+..+++..-....... ..-.++++.+++ .++++.++.|..+.+.++.+.+.|++.+.+|-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~--~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~-- 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR--ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA-- 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh--
Confidence 44445556667899998776532111111 123466666665 4688999999999999999999999998876432
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee-----------ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGII-----------GL-SESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~-----------Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++ +++...+..+.+.+..+.+..++-. |- .++..+..+.+..+.+.+ .+.+.++....
T Consensus 104 --~~------~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i~~ 173 (243)
T cd04731 104 --VE------NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMDR 173 (243)
T ss_pred --hh------ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEeccCC
Confidence 11 2233333334333223444444332 22 345566667777777887 78887776443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh-CcceeeeCCeeccCCCCCchHHHHHH
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~-GAn~~~~~~~~~~~~g~~~~~~~~~i 327 (348)
.||. +.+. .+.++ ..+... +..+-+++|-.+ .+.....+.. ||+.++.|.-+ ...+-+..+..+.+
T Consensus 174 -~g~~----~g~~-~~~i~---~i~~~~-~~pvia~GGi~~--~~di~~~l~~~g~dgv~vg~al-~~~~~~~~~~~~~~ 240 (243)
T cd04731 174 -DGTK----KGYD-LELIR---AVSSAV-NIPVIASGGAGK--PEHFVEAFEEGGADAALAASIF-HFGEYTIAELKEYL 240 (243)
T ss_pred -CCCC----CCCC-HHHHH---HHHhhC-CCCEEEeCCCCC--HHHHHHHHHhCCCCEEEEeHHH-HcCCCCHHHHHHHH
Confidence 3331 1122 22222 222222 222333443222 2223334555 89999876532 22222344555555
Q ss_pred HH
Q psy14485 328 KK 329 (348)
Q Consensus 328 ~~ 329 (348)
++
T Consensus 241 ~~ 242 (243)
T cd04731 241 AE 242 (243)
T ss_pred hh
Confidence 43
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.9 Score=38.45 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--C
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 179 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et--~ 179 (348)
.++.++.+.+.|++++++.+-... . ..+.-.++++++.+ .++++.+-.|..+.|.++.+.++|++++.+|-.. +
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~-~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAA-F--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEecccc-C--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 344556667789999999875211 1 11223477777765 4688888999999999999999999999887655 2
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 180 PKLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 180 ~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++++..+ .+...+. +.++.++ +.|..++..+..+.++.+.+.+ ...+.++...
T Consensus 111 p~l~~~i------------~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~ 169 (241)
T PRK14024 111 PEWCARV------------IAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVT 169 (241)
T ss_pred HHHHHHH------------HHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeec
Confidence 4544432 3232221 2222222 2244234455666777777777 7777666544
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.9 Score=38.18 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCC-CHHHHHHHHHhCCCeeeccC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML-NENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~g~ 176 (348)
++..+.++++.+.+.|++.|++---+.... .....=.++++.+++. ...+.++.-.. ..+.++.+.++|.+.+.+-+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~-~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~ 96 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFV-PNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI 96 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcC-CccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee
Confidence 335677788888888999988743211100 0111001566666653 22222232222 24678888999999996555
Q ss_pred C-CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 177 D-TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 177 e-t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+ .. .+...+.++.+++.|+.+...+ ...|+.+..+. +.+.+ .++.+.+.++.|..+ -.
T Consensus 97 ~q~~------------~d~~~~~~~~i~~~g~~iGls~---~~~t~~~~~~~---~~~~~-~~Dyi~~~~v~pg~~--~~ 155 (229)
T PLN02334 97 EQAS------------TIHLHRLIQQIKSAGMKAGVVL---NPGTPVEAVEP---VVEKG-LVDMVLVMSVEPGFG--GQ 155 (229)
T ss_pred cccc------------chhHHHHHHHHHHCCCeEEEEE---CCCCCHHHHHH---HHhcc-CCCEEEEEEEecCCC--cc
Confidence 4 11 1234567888888887543332 12354443332 22331 057887877765322 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. .....+..+..+|...++..|.+.+|- ..+.-.....+||+.++.|..+.
T Consensus 156 ~----~~~~~~~~i~~~~~~~~~~~I~a~GGI---~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 156 S----FIPSMMDKVRALRKKYPELDIEVDGGV---GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred c----cCHHHHHHHHHHHHhCCCCcEEEeCCC---CHHHHHHHHHcCCCEEEEChHHh
Confidence 1 112344444555655565445544432 23334457789999998886553
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.6 Score=37.31 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=110.8
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHH---HhCCCeeeccCCC-CH
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLK---KVGLDYYNHNLDT-SP 180 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk---~aG~~~i~~g~et-~~ 180 (348)
+.++.+.+.|-++|.+.. ..+.+++.+-+.++++ ...+.+|.+..+.+.+..+. +.+++.+.+++.- .+
T Consensus 33 ~a~~~~~~rgr~ef~~~~------e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~ 105 (231)
T TIGR00736 33 KASRDIEKRGRKEFSFNL------EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQP 105 (231)
T ss_pred HHHHHHHHcCCcccCcCc------ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcH
Confidence 344567788888874321 1245778888888864 45788898887776554443 2388999988877 45
Q ss_pred HHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy14485 181 KLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 181 e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
++.+.=.. .++++...+.++.+++.+.++++=+=.|. +.++..+..+.+.+.+ .+.+.+....| |.+.
T Consensus 106 ~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~--g~~~--- 176 (231)
T TIGR00736 106 EITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP--GKPY--- 176 (231)
T ss_pred HHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC--CCch---
Confidence 55543221 24788888888888887877776655554 3345567777788888 88887754332 2211
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 258 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 258 ~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
-.++.+...+..+++..|-..+|-.+ .+-....+.+||+.++.+.
T Consensus 177 ------a~~~~I~~i~~~~~~ipIIgNGgI~s--~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 177 ------ADMDLLKILSEEFNDKIIIGNNSIDD--IESAKEMLKAGADFVSVAR 221 (231)
T ss_pred ------hhHHHHHHHHHhcCCCcEEEECCcCC--HHHHHHHHHhCCCeEEEcH
Confidence 22444444454443322222222111 2334446678999997753
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.75 Score=43.05 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEE--EeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFC--MGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~--l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
..+++++.+.++...+.|+..|- +.|+...+ ...+.+.+..+++..++.++.+.++.. ....++.+.++|
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G 193 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAG 193 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcC
Confidence 35689999999998888988863 33321111 124678889999999988888877654 345567777889
Q ss_pred CCeeeccCCCCHHH
Q psy14485 169 LDYYNHNLDTSPKL 182 (348)
Q Consensus 169 ~~~i~~g~et~~e~ 182 (348)
++++.|+.-.+++.
T Consensus 194 ~~~i~H~~~~~~~~ 207 (342)
T cd01299 194 VDTIEHGFLIDDET 207 (342)
T ss_pred CCEEeecCCCCHHH
Confidence 98887765444433
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.1 Score=38.61 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++++.++...+.|+.-|=++++.+.|. ....+++..+++.+++. ++. ++..+...+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p--iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP--ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe--EEEeCCcHHHHHHHHHhCCC
Confidence 6899999999999999999988887644332 12345677888888764 544 46777777888777777766
Q ss_pred eee
Q psy14485 171 YYN 173 (348)
Q Consensus 171 ~i~ 173 (348)
-|+
T Consensus 99 iIN 101 (258)
T cd00423 99 IIN 101 (258)
T ss_pred EEE
Confidence 554
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.1 Score=40.83 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCC-CCcccHHHHHHHHHHHHh-cCcEEEEecCCCCH-----------HHHHHHH
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKK-IGLETCLTLGMLNE-----------NQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~-~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~-----------e~l~~Lk 165 (348)
...+.++.++...+.|+++++|.+-.-. .+....+.+.++++++.+ .++++++-.|..+. |.++.+.
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH
Confidence 3455566777788899999988764211 112233457888888876 57888887776664 7799999
Q ss_pred HhCCCeeeccCCC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEe-------------------------------
Q psy14485 166 KVGLDYYNHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCG------------------------------- 212 (348)
Q Consensus 166 ~aG~~~i~~g~et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~------------------------------- 212 (348)
++|+++|.+|-.. .+|.|=.-+...+++-+.+..+..-+.-+-++.+
T Consensus 345 ~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (538)
T PLN02617 345 RSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAW 424 (538)
T ss_pred HcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceE
Confidence 9999999997544 2332222223334444444444431110212222
Q ss_pred ---Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc
Q psy14485 213 ---GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 288 (348)
Q Consensus 213 ---~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~ 288 (348)
.+.|- ..|.-+..+.++.+.+++ ...+-+.. +-..||.- .++. +.++.++-+ .+..+-+|+|--
T Consensus 425 ~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~t~-id~DGt~~----G~d~-~l~~~v~~~----~~ipviasGG~g 492 (538)
T PLN02617 425 YQCTVKGGREGRPIGAYELAKAVEELG--AGEILLNC-IDCDGQGK----GFDI-ELVKLVSDA----VTIPVIASSGAG 492 (538)
T ss_pred EEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEEee-cccccccc----CcCH-HHHHHHHhh----CCCCEEEECCCC
Confidence 12222 234445667777777777 55654433 33456542 2232 223322211 233344555543
Q ss_pred ccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 289 EMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 289 ~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
++ .++....-..||+..+.+. +..-..-+..+..+.+++.|..+
T Consensus 493 ~~-~d~~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 493 TP-EHFSDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CH-HHHHHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 33 2333322236788876554 33445566788899999998654
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=43.96 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
..-+.++.++...+.|+.++.|-.- +.+....+-+.+.+++..+ ..+++++-.|.-+.|.++.+..+|.|-++++--
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDI--tAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsa 105 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDI--TASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSA 105 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEec--ccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChh
Confidence 3445566777778889999887665 2334455778888888876 588999999999999999999999999998754
Q ss_pred C--CHHHHhccCCCCCHHHHHHHHHHHHH-cCCe-eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 178 T--SPKLYGDIISTRDYENRLNTLKNVRN-VGIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 178 t--~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~-i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
. +|++..++......+-++=+|..-+. -|-. -..-..+|= ..|.-+.++-...+.+++ .-.|-++. +-..||
T Consensus 106 Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLts-mD~DGt 182 (256)
T COG0107 106 AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTS-MDRDGT 182 (256)
T ss_pred HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEee-eccccc
Confidence 4 35554433221111111111111111 1210 001112333 334444455555556666 56665554 334666
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCce--eccccccccchhhHHHHHHhC-cceeeeCCeeccCCCCCchHHHHHHHH
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRI--RMSAGRKEMGETTQAFCFLAG-ANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i--~~s~g~~~l~~~~~~~~l~~G-An~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
.-. .+ +.++...+. ..+| -+|+|--+. +.-+.++..| |+..+.. ++..-..-+..+..+.+++
T Consensus 183 k~G----yD----l~l~~~v~~---~v~iPvIASGGaG~~--ehf~eaf~~~~adAaLAA-siFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 183 KAG----YD----LELTRAVRE---AVNIPVIASGGAGKP--EHFVEAFTEGKADAALAA-SIFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccC----cC----HHHHHHHHH---hCCCCEEecCCCCcH--HHHHHHHHhcCccHHHhh-hhhhcCcccHHHHHHHHHH
Confidence 532 11 122222222 2233 345544332 2234466555 6665332 2334455567889999999
Q ss_pred cCCCc
Q psy14485 330 LGINT 334 (348)
Q Consensus 330 ~G~~p 334 (348)
.|..+
T Consensus 249 ~gi~V 253 (256)
T COG0107 249 QGIEV 253 (256)
T ss_pred cCCCc
Confidence 99865
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.88 Score=44.40 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHh
Q psy14485 156 LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN 233 (348)
Q Consensus 156 l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~ 233 (348)
-+.+.++...++|+|.|.+|.+. +-+.. ....+.++..++++.+|+.|.++...+-.=. .+..+.+.+.+..+.+
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 35677888889999999999987 43332 2355789999999999999988765533222 3445667777788888
Q ss_pred cCCCCCeeecc
Q psy14485 234 LNPYPESVPIN 244 (348)
Q Consensus 234 l~~~~~~i~~~ 244 (348)
++ ++.+-+.
T Consensus 88 ~g--vDgvIV~ 96 (443)
T PRK15452 88 MK--PDALIMS 96 (443)
T ss_pred CC--CCEEEEc
Confidence 87 7776554
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.7 Score=37.01 Aligned_cols=184 Identities=15% Similarity=0.068 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
+..+.++.+.+.|++.+++.+-... ......-.++++.+++ .++++.+..|..+.+.++.+.++|++.+-++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~-- 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA-- 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH--
Confidence 4455556666789999988753111 1111223455555655 3678888899999999999999999998776543
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe------eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGI------IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i------~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+. +++...+..+...+.-+.++.++- .|. ..+..+..+.++.+.+.+ .+.+.+..... .|+.
T Consensus 106 --l~------dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g~~ 174 (234)
T cd04732 106 --VK------NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DGTL 174 (234)
T ss_pred --Hh------ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CCcc
Confidence 11 122222222222111122233221 122 223445556667777777 77776654332 3332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
..++.+ ++...+...+ ..+-+++|-.+ .+.-..++..||+.++.|.-
T Consensus 175 ----~g~~~~----~i~~i~~~~~-ipvi~~GGi~~--~~di~~~~~~Ga~gv~vg~~ 221 (234)
T cd04732 175 ----SGPNFE----LYKELAAATG-IPVIASGGVSS--LDDIKALKELGVAGVIVGKA 221 (234)
T ss_pred ----CCCCHH----HHHHHHHhcC-CCEEEecCCCC--HHHHHHHHHCCCCEEEEeHH
Confidence 223322 2222222222 12333333222 12233456789999987653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=2 Score=41.10 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=88.4
Q ss_pred HHHHHHHHhcC--cEEEEecCCCCHH--HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE
Q psy14485 136 ENMICEVKKIG--LETCLTLGMLNEN--QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~--~~i~~~~g~l~~e--~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
.++++.+++.+ ..+.+.....+.+ ..+.+.++|++.+.+..++. .+...++++.+++.|+.+..
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------------~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------------ISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------------HHHHHHHHHHHHHcCCEEEE
Confidence 45566666542 3344444333332 25677788888887655442 33455678999999987766
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc
Q psy14485 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG 291 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~ 291 (348)
+ +++. +|+.+.++.+ ..+ ++.+-++.-+. |++. . + .. +-+...|....+..|.+.+|- +
T Consensus 282 D-~lnp-~tp~e~i~~l----~~~--vD~Vllht~vd-p~~~----~-~-~~---~kI~~ikk~~~~~~I~VdGGI---~ 340 (391)
T PRK13307 282 D-MLNV-EDPVKLLESL----KVK--PDVVELHRGID-EEGT----E-H-AW---GNIKEIKKAGGKILVAVAGGV---R 340 (391)
T ss_pred E-EcCC-CCHHHHHHHh----hCC--CCEEEEccccC-CCcc----c-c-hH---HHHHHHHHhCCCCcEEEECCc---C
Confidence 5 3333 4554444333 334 78887775332 2211 1 1 11 233444444445456666542 2
Q ss_pred hhhHHHHHHhCcceeeeCCeeccCCCCCch-HHHHHHHHcCCCch
Q psy14485 292 ETTQAFCFLAGANSIFYGDKLLTTDNTKTN-DDSKLLKKLGINTR 335 (348)
Q Consensus 292 ~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~-~~~~~i~~~G~~p~ 335 (348)
.+.-..++.+||+.++.|..+. .+. .+. ...++.+.++..+.
T Consensus 341 ~eti~~l~~aGADivVVGsaIf-~a~-Dp~~aak~l~~~i~~~~~ 383 (391)
T PRK13307 341 VENVEEALKAGADILVVGRAIT-KSK-DVRRAAEDFLNKLKPDID 383 (391)
T ss_pred HHHHHHHHHcCCCEEEEeHHHh-CCC-CHHHHHHHHHHhhccCch
Confidence 3334567889999998887553 222 233 33444444444443
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.9 Score=37.36 Aligned_cols=173 Identities=17% Similarity=0.064 Sum_probs=97.0
Q ss_pred ccHHHHHHHHHHHHh--cCcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHH
Q psy14485 130 RDLDNIENMICEVKK--IGLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNV 202 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~--~~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~ 202 (348)
...+.+.+.++..++ .+..+.++.+..+.+ .++.+.++|++.|.+++.+ .....+. -.++.+...+.++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHHHHH
Confidence 345666666655554 356677776554443 4667777899999888765 2111111 124667777778887
Q ss_pred HHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc-----------cCCCCCCCCC-CCCHHHHHHHH
Q psy14485 203 RNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-----------IKGTPLYGSS-ILDPLEFIRTI 269 (348)
Q Consensus 203 ~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P-----------~~gT~l~~~~-~~~~~~~~~~~ 269 (348)
++. ++++.+-+- .+.+.++..+.++.+.+.+ .+.+.+....+ ...++..... .+.....++.+
T Consensus 158 r~~~~~pv~vKl~--~~~~~~~~~~~a~~l~~~G--ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v 233 (289)
T cd02810 158 KAAVDIPLLVKLS--PYFDLEDIVELAKAAERAG--ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWV 233 (289)
T ss_pred HHccCCCEEEEeC--CCCCHHHHHHHHHHHHHcC--CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHH
Confidence 774 444433322 2457778888889898888 78877643221 0011111111 11112235566
Q ss_pred HHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 270 AVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 270 a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
...|..++ +..|-..+|-.+ .+.....+.+||+.++.+.
T Consensus 234 ~~i~~~~~~~ipiia~GGI~~--~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 234 ARLAARLQLDIPIIGVGGIDS--GEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHhcCCCCCEEEECCCCC--HHHHHHHHHcCccHheEcH
Confidence 66666665 433433443222 3445556789999997664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.2 Score=36.88 Aligned_cols=184 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
.++.++.+.+.|++.+++..-.. .........+.++.+.+ .++++.++.|.-+.+.++.+.++|++++.+|-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~--~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~--- 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDG--AFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA--- 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechh--hhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH---
Confidence 34445556678999998876421 11111233344444433 5788888899999999999999999999886543
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
++ +.+...+..+....-.+-++.+. +-|. .++..+..+..+.+.+.+ .+.+.+....+ .|+.
T Consensus 109 -~~------~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G--~~~i~~~~~~~-~g~~- 177 (241)
T PRK13585 109 -VE------NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELG--AGSILFTNVDV-EGLL- 177 (241)
T ss_pred -hh------ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEEeecC-CCCc-
Confidence 11 11222222222211112222221 2244 233225566666667776 66665444321 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..++.+ ++...+... +..+-+++|-.+. .+... ...+||+.++.|.-+
T Consensus 178 ---~g~~~~----~i~~i~~~~-~iPvia~GGI~~~-~di~~-~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 178 ---EGVNTE----PVKELVDSV-DIPVIASGGVTTL-DDLRA-LKEAGAAGVVVGSAL 225 (241)
T ss_pred ---CCCCHH----HHHHHHHhC-CCCEEEeCCCCCH-HHHHH-HHHcCCCEEEEEHHH
Confidence 222322 222222222 2234444442222 23333 577999999776533
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.23 E-value=3.5 Score=36.01 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=99.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+.+...+.++.+.+.|+..+++.+-... ..... +.++.+++ .++++-+-.+..+++.++.+.++|++.+.++.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~-~~g~~----~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKY-FQGSL----EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccc-cCCCH----HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 44556677777788889999988764221 11223 23333433 25566554456777899999999999998755
Q ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 177 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 177 et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.. ...+...+.++.++..|+.+... . .+.++ +..+.+++ ++.+.+. +..++.+
T Consensus 103 ~~-----------~~~~~~~~~~~~~~~~g~~~~v~----v-~~~~e----~~~~~~~g--~~~i~~t---~~~~~~~-- 155 (217)
T cd00331 103 AA-----------LDDEQLKELYELARELGMEVLVE----V-HDEEE----LERALALG--AKIIGIN---NRDLKTF-- 155 (217)
T ss_pred cc-----------CCHHHHHHHHHHHHHcCCeEEEE----E-CCHHH----HHHHHHcC--CCEEEEe---CCCcccc--
Confidence 32 12245556666777788876222 2 24444 44455666 7777655 3333332
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 257 SSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.++. ..+...+..+| +..+-+.+|-.+ .+.-...+.+||+.++.|.-+
T Consensus 156 --~~~~----~~~~~l~~~~~~~~pvia~gGI~s--~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 156 --EVDL----NTTERLAPLIPKDVILVSESGIST--PEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred --CcCH----HHHHHHHHhCCCCCEEEEEcCCCC--HHHHHHHHHcCCCEEEECHHH
Confidence 2232 23333333454 322323333222 233445678899999888654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.6 Score=36.19 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=95.7
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
..+.++.+.+.|++.+++.+-...... ...-.++++.+.+ .++++.+..|..+.+.++.+.++|++.+-++-..
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g--~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~--- 104 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEG--GPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA--- 104 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccC--CCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH---
Confidence 344455567889999988764211111 1112344455544 3678888889999999999999999998776432
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeEe------eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNVG---INICCGGI------IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~i------~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
++ +.+...+. +++.| +-++.++- .|. ..+..+..+.++.+.+.+ .+.+.+..... .|
T Consensus 105 -l~------d~~~~~~~---~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~-~g 171 (230)
T TIGR00007 105 -VE------NPDLVKEL---LKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR-DG 171 (230)
T ss_pred -hh------CHHHHHHH---HHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC-CC
Confidence 11 12233333 33344 23333432 233 222234556667777777 67666554432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+. ..++. +++...+.. .+..+-+++|-.+. .+.. .++..||+.++.|.
T Consensus 172 ~~----~g~~~----~~i~~i~~~-~~ipvia~GGi~~~-~di~-~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 172 TL----SGPNF----ELTKELVKA-VNVPVIASGGVSSI-DDLI-ALKKLGVYGVIVGK 219 (230)
T ss_pred Cc----CCCCH----HHHHHHHHh-CCCCEEEeCCCCCH-HHHH-HHHHCCCCEEEEeH
Confidence 32 12332 222223322 23334444443222 2333 35679999997764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.3 Score=43.72 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
+++.+.++...+.|+.-|-++++.+. ...+.+..+++.+++. ++. ++..+.+.+.++.--++|.+-|+ ++..
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p~~~~v~~~V~~l~~~~~~p--ISIDT~~~~v~eaAL~aGAdiIN-sVs~~ 238 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---DDPDVVKEKVKTALDALDSP--VIADTPTLDELYEALKAGASGVI-MPDVE 238 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---CcHHHHHHHHHHHHhhCCCc--EEEeCCCHHHHHHHHHcCCCEEE-ECCcc
Confidence 88999999999999999988876332 2456788899888874 444 57888999999999999998776 4433
Q ss_pred C-HHHHhc----------cCC--CCCHHHHHHHHHHHHHcCC-eeeEeEeeecCCCHHHHHHHHHHHHh
Q psy14485 179 S-PKLYGD----------IIS--TRDYENRLNTLKNVRNVGI-NICCGGIIGLSESRDQRAELIFQLAN 233 (348)
Q Consensus 179 ~-~e~l~~----------i~~--~~~~~~~~~~i~~~~~~G~-~i~~~~i~Glget~e~~~~~l~~l~~ 233 (348)
. +++++. ++. ...++...+.++.+.++|+ ++..+-++|. ....+.+++..++.
T Consensus 239 ~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 239 NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 2 555431 111 2245777788999999999 6777777765 22346666666653
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=94.04 E-value=4 Score=36.39 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc-CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCee
Q psy14485 131 DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN-LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g-~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
+.+++.++.+..++.|+.+.+++ .+.+.++.|.+.|+..+-++ -+. ..+..++.+.+.|.++
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl---------------~n~~lL~~~A~tgkPv 116 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDL---------------TNLPLLEYIAKTGKPV 116 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGT---------------T-HHHHHHHHTT-S-E
T ss_pred CHHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEeccccc---------------cCHHHHHHHHHhCCcE
Confidence 45788888888888899887665 68888999999999887753 211 1334566666677764
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc
Q psy14485 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 288 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~ 288 (348)
|+.- +-|.+++.+.+..+++-+. .+.+-++...-+| || ..+--++.+...|..++ ..|-+| -|
T Consensus 117 ----IlSTG~stl~EI~~Av~~~~~~~~-~~l~llHC~s~YP-~~-------~e~~NL~~i~~L~~~f~-~~vG~S--DH 180 (241)
T PF03102_consen 117 ----ILSTGMSTLEEIERAVEVLREAGN-EDLVLLHCVSSYP-TP-------PEDVNLRVIPTLKERFG-VPVGYS--DH 180 (241)
T ss_dssp ----EEE-TT--HHHHHHHHHHHHHHCT---EEEEEE-SSSS----------GGG--TTHHHHHHHHST-SEEEEE--E-
T ss_pred ----EEECCCCCHHHHHHHHHHHHhcCC-CCEEEEecCCCCC-CC-------hHHcChHHHHHHHHhcC-CCEEeC--CC
Confidence 3434 5688999999999965551 3333333332222 23 23344667778888888 444444 36
Q ss_pred ccchhhHHHHHHhCccee
Q psy14485 289 EMGETTQAFCFLAGANSI 306 (348)
Q Consensus 289 ~l~~~~~~~~l~~GAn~~ 306 (348)
..+......++..||..|
T Consensus 181 t~g~~~~~~AvalGA~vI 198 (241)
T PF03102_consen 181 TDGIEAPIAAVALGARVI 198 (241)
T ss_dssp SSSSHHHHHHHHTT-SEE
T ss_pred CCCcHHHHHHHHcCCeEE
Confidence 666667788999999998
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.4 Score=39.99 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=89.6
Q ss_pred CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhc
Q psy14485 157 NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANL 234 (348)
Q Consensus 157 ~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l 234 (348)
+-+.++..-++|+|.|.+|... +-+.+. ...+.+++.+.++.+|++|.++.+.+=.-+ ....+.+.+.++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 4466777778899999999763 222211 357899999999999999997554433333 56667788999999999
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeecc
Q psy14485 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 314 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~ 314 (348)
+ +|.+.+.=. -++.+++...|+..+.+|+--...+.......-..|+..++..
T Consensus 92 G--vDaviv~Dp--------------------g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~----- 144 (347)
T COG0826 92 G--VDAVIVADP--------------------GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLP----- 144 (347)
T ss_pred C--CCEEEEcCH--------------------HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeC-----
Confidence 8 777654321 2556667777776555442111111233344455676666432
Q ss_pred CCCCCchHHHHHHHHc
Q psy14485 315 TDNTKTNDDSKLLKKL 330 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~ 330 (348)
..-+.+++.++.++.
T Consensus 145 -rEls~~ei~~i~~~~ 159 (347)
T COG0826 145 -RELSLEEIKEIKEQT 159 (347)
T ss_pred -ccCCHHHHHHHHHhC
Confidence 122345666666665
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=93.86 E-value=4.3 Score=35.76 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
...+.++.+.+.|++.+++.+-...... ...-.++++.+.+ .++++.+..|..+.+.++.+.++|++.+.+|-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~-- 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA-- 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH--
Confidence 3344455666789999988773111111 1123455555544 4678888899999999999999999999877644
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
++ +.+...+..+...+ .+.++.++ +.|. ..+..+..+..+.+.+++ ++.+.++... ..||.
T Consensus 107 --l~------~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g--~~~ii~~~~~-~~g~~ 174 (233)
T PRK00748 107 --VK------NPELVKEACKKFPG-KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAG--VKAIIYTDIS-RDGTL 174 (233)
T ss_pred --Hh------CHHHHHHHHHHhCC-CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcC--CCEEEEeeec-CcCCc
Confidence 11 11222233333222 13333332 1233 233444566677777777 6665555433 12332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhC-cceeeeCC
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAG-ANSIFYGD 310 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~G-An~~~~~~ 310 (348)
. .++.+.+.++ +...+ ..+-+++|-.+. .+ -...+..| |+.++.|.
T Consensus 175 ~----G~d~~~i~~l----~~~~~-ipvia~GGi~~~-~d-i~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 175 S----GPNVEATREL----AAAVP-IPVIASGGVSSL-DD-IKALKGLGAVEGVIVGR 221 (233)
T ss_pred C----CCCHHHHHHH----HHhCC-CCEEEeCCCCCH-HH-HHHHHHcCCccEEEEEH
Confidence 1 2333322222 22233 223334432222 22 33456667 99998765
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.84 E-value=5.3 Score=36.70 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc
Q psy14485 132 LDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV 205 (348)
Q Consensus 132 ~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~ 205 (348)
.+.+.+.++..++ .+..+.++....+. +.++.+.++|+|.|.+++-+ ..... .-.-..+.+...+.++.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhc
Confidence 3455554444443 45566666543333 34566777899999888765 21100 000124677778888888886
Q ss_pred -CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc------cCCCC-----CCCC-CCCCHHHHHHHHHHH
Q psy14485 206 -GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ------IKGTP-----LYGS-SILDPLEFIRTIAVA 272 (348)
Q Consensus 206 -G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P------~~gT~-----l~~~-~~~~~~~~~~~~a~~ 272 (348)
++++.+-+ +. +.++..+.++.+.+.+ .+.+.+..... ....| .... .+......++.+...
T Consensus 153 ~~~Pv~vKl--~~--~~~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i 226 (296)
T cd04740 153 TDVPVIVKL--TP--NVTDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQV 226 (296)
T ss_pred cCCCEEEEe--CC--CchhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHH
Confidence 66554442 22 3346677777788887 77665432111 11111 1111 111111234444444
Q ss_pred HHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCch
Q psy14485 273 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINTR 335 (348)
Q Consensus 273 R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p~ 335 (348)
+..+ +..|-..+|-.+ .+.....+.+||+.++.+.-+. . ++.. ++..+.+++.||.-+
T Consensus 227 ~~~~-~ipii~~GGI~~--~~da~~~l~~GAd~V~igra~l-~-~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 227 YKAV-EIPIIGVGGIAS--GEDALEFLMAGASAVQVGTANF-V-DPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHhc-CCCEEEECCCCC--HHHHHHHHHcCCCEEEEchhhh-c-ChHHHHHHHHHHHHHHHHcCCCCH
Confidence 4433 222323333222 3445567789999997664332 2 4331 456778888998644
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.8 Score=36.42 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=70.0
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.+ |..+-..+.+-+ .++| ......+. ..-+..+++++...+..+...|++.+++..+.......+
T Consensus 100 ~~-~~e~ip~gYiv~-~~~~-------~v~~v~~a--~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---- 164 (205)
T TIGR01769 100 KL-NLEVIPMAYLIV-GPGG-------AVGYVGKA--REIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---- 164 (205)
T ss_pred Hc-CCcccceEEEEE-CCCC-------ceeeecCc--ccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC----
Confidence 35 566666666666 4454 22221111 122237899999999888888999999976421222223
Q ss_pred HHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 136 ENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 136 ~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++++.+++ .++++.+-.|..+.|.++.+.++|+|++-+|
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 455566655 3678888899999999999999999998654
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=4.7 Score=36.12 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.++. +.+.+.|++.+++.+-..... ....-.++++.+.+ .++++.+..|..+.+.++.+.+.|++.+.+|-.
T Consensus 31 d~~~~a---~~~~~~G~~~i~i~dl~~~~~--~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 31 DPVELA---KRYNEEGADELVFLDITASSE--GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred CHHHHH---HHHHHcCCCEEEEEeCCcccc--cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 444444 445578999999887521111 11344566666665 468889999999999999999999999987643
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe-----------e-ec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI-----------I-GL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i-----------~-Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
. ++ +++...+..+...+-.+.++.++- . |- ..+..+..+.+..+.+.+ .+.+.+.
T Consensus 106 ~----l~------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~ 173 (253)
T PRK02083 106 A----VA------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLT 173 (253)
T ss_pred H----hh------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEc
Confidence 2 11 112222222221111122333321 1 11 122334455556666676 6666554
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHH-hCcceeeeCCeeccCCCCCchHH
Q psy14485 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKLLTTDNTKTNDD 323 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~-~GAn~~~~~~~~~~~~g~~~~~~ 323 (348)
.... .||. . .++ +.++..++...+ ..+-+++|-.+. .+.. .++. .||+.++.|.-+ ....-+.++.
T Consensus 174 ~i~~-~g~~-~---g~d----~~~i~~~~~~~~-ipvia~GGv~s~-~d~~-~~~~~~G~~gvivg~al-~~~~~~~~~~ 240 (253)
T PRK02083 174 SMDR-DGTK-N---GYD----LELTRAVSDAVN-VPVIASGGAGNL-EHFV-EAFTEGGADAALAASIF-HFGEITIGEL 240 (253)
T ss_pred CCcC-CCCC-C---CcC----HHHHHHHHhhCC-CCEEEECCCCCH-HHHH-HHHHhCCccEEeEhHHH-HcCCCCHHHH
Confidence 4321 2332 1 122 233333333333 233344433222 2222 3454 599999877533 2334456777
Q ss_pred HHHHHHcCCCc
Q psy14485 324 SKLLKKLGINT 334 (348)
Q Consensus 324 ~~~i~~~G~~p 334 (348)
.+.+++.|+.+
T Consensus 241 ~~~~~~~~~~~ 251 (253)
T PRK02083 241 KAYLAEQGIPV 251 (253)
T ss_pred HHHHHHCCCcc
Confidence 88888888764
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.1 Score=36.86 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC---------CHHHHHHHHHhCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML---------NENQAYRLKKVGL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l---------~~e~l~~Lk~aG~ 169 (348)
++..+.+.++.+..+ +..+-|++|. ....+.+.+.+.++..++.++.++.- |++ -++.++..++.|+
T Consensus 10 ~~~~~~d~Le~~g~y-ID~lKfg~Gt--~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf 85 (237)
T TIGR03849 10 PPKFVEDYLKVCGDY-ITFVKFGWGT--SALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGF 85 (237)
T ss_pred CHHHHHHHHHHhhhh-eeeEEecCce--EeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCC
Confidence 455555444433332 6777887773 23345567888888888888887532 222 2355669999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--C-----CCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--S-----ESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--g-----et~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.+. ..+.+++.+.++.+++.|+.+-+- +|. . .+.+++++.++...+.+ .+.|-
T Consensus 86 ~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~~Vi 152 (237)
T TIGR03849 86 EAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--ADYVI 152 (237)
T ss_pred CEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--CcEEE
Confidence 9998876551 247789999999999999976543 333 1 45677777777666676 55554
Q ss_pred c
Q psy14485 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 153 i 153 (237)
T TIGR03849 153 I 153 (237)
T ss_pred E
Confidence 3
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.8 Score=35.53 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
++.++.+.+.|++.+++..-.. .....+. ++++.+.+ .+.++.+..|.-+.+.++.+.++|++.+-+|-..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~-- 106 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA-- 106 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH--
Confidence 3444556678999988765311 1122333 44444443 4678888899999999999999999999877433
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-------------CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------------SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-------------get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++ +++...+..+...+.-+.++.++--|+ .++..+..+.+..+.+.+ .+.+.++...
T Consensus 107 --l~------~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~i~~i~ 176 (232)
T TIGR03572 107 --LE------NPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG--AGEILLNSID 176 (232)
T ss_pred --hc------CHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEeCCC
Confidence 11 122222223222111133444432221 123344566777777777 7888777644
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+ .|| .+.+. ++++...+...+ ..+-+++|-.+. .+........||+.++.|.
T Consensus 177 ~-~g~----~~g~~----~~~~~~i~~~~~-ipvia~GGi~s~-~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 177 R-DGT----MKGYD----LELIKTVSDAVS-IPVIALGGAGSL-DDLVEVALEAGASAVAAAS 228 (232)
T ss_pred c-cCC----cCCCC----HHHHHHHHhhCC-CCEEEECCCCCH-HHHHHHHHHcCCCEEEEeh
Confidence 3 233 12222 233333333222 223344433222 3333335668999997764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.33 E-value=1 Score=44.32 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecC-CCCHHHHHHHHHhCCCeeeccCC
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLG-MLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+++.+.++.+.+.|++.|.+... +. ....+.++++.|++. ++.+.+ | ..+.+..+.|.++|++.|.+|+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a--~g---~~~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA--HG---HQVKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC--CC---CcHHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHHhCCCEEEECCc
Confidence 46667777888889999988654 21 227899999999985 455543 6 78999999999999999998776
Q ss_pred C-CH---HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 178 T-SP---KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 178 t-~~---e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
. +- +.+..++. ....-.+++.+.+++.|+++.++ |=-.+..|+.+.+. ++ .+.+-+..+
T Consensus 297 ~Gs~~ttr~~~~~g~-~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 297 PGAMCTTRMMTGVGR-PQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred CCccccCccccCCCC-chHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 5 32 22222222 25677788888888888765443 22356777766653 55 555554443
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.19 E-value=5.1 Score=34.57 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.+.++.+.+.|+..|.+--.+ . +...+.+.++.+++ .++++.++ +.++.+.++|++.+.++.+
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~--~---~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~~ 90 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKG--L---DTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQD 90 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCC--C---CHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCcc
Confidence 45556667777899988775431 1 22344445555443 35666443 5688899999999887543
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.. . ...++..++.|. ++|. -.|.++..+. .+.+ ++.+.+.++.|....+-.
T Consensus 91 ~~-----------~----~~~~~~~~~~~~------~~g~~~~t~~e~~~a----~~~g--aD~v~~~~~~~~~~~~~~- 142 (212)
T PRK00043 91 DL-----------P----VADARALLGPDA------IIGLSTHTLEEAAAA----LAAG--ADYVGVGPIFPTPTKKDA- 142 (212)
T ss_pred cC-----------C----HHHHHHHcCCCC------EEEEeCCCHHHHHHH----hHcC--CCEEEECCccCCCCCCCC-
Confidence 21 0 112233333343 3444 4566654333 3566 899998887765432211
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 257 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+.... +.+...+..+++..|-+.+|- ..+.-...+.+||+.+..|..+
T Consensus 143 ~~~~g~----~~~~~~~~~~~~~~v~a~GGI---~~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 143 KAPQGL----EGLREIRAAVGDIPIVAIGGI---TPENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred CCCCCH----HHHHHHHHhcCCCCEEEECCc---CHHHHHHHHHcCCCEEEEeHHh
Confidence 111122 222333334454444444432 2344456788999999877655
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.1 Score=34.50 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+++.+.+.++.+.+.|++.+.|. +|...+ ....-.++++.+++. ...+.+..... ..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 456778888888889999999884 221111 112344666666652 33332222111 34678899999999977
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..+. .++..+.++.+++.|+.+.. .+. -+|..+..+.+ ... ++.+.+.++.| |+.
T Consensus 85 vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~-~~t~~e~~~~~---~~~---~d~i~~~~~~~--g~t 140 (210)
T TIGR01163 85 VHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLN-PATPLEFLEYV---LPD---VDLVLLMSVNP--GFG 140 (210)
T ss_pred EccCC-------------chhHHHHHHHHHHcCCcEEE--EEC-CCCCHHHHHHH---Hhh---CCEEEEEEEcC--CCC
Confidence 53321 13445666888888876522 222 33444433332 222 45655554433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
-... . ...++.+...|.+.++ ..+-+.+| +..+.-...+..||+.++.|..+
T Consensus 141 g~~~---~-~~~~~~i~~i~~~~~~~~~~~~i~v~GG---I~~env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 141 GQKF---I-PDTLEKIREVRKMIDENGLSILIEVDGG---VNDDNARELAEAGADILVAGSAI 196 (210)
T ss_pred cccc---c-HHHHHHHHHHHHHHHhcCCCceEEEECC---cCHHHHHHHHHcCCCEEEEChHH
Confidence 1111 1 1222333444433332 12333333 22333445678999999888655
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.03 E-value=7.1 Score=35.78 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=128.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHHHHHHHHHh--CC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNENQAYRLKKV--GL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e~l~~Lk~a--G~ 169 (348)
.++.++=++.++.+.+.|++.|-++ . |... +.-.+.++.+.+. +..+. .......+.++.-.++ |+
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~g-f---P~~~--~~e~e~~~~i~~~~~~~~~~~~~-al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVG-F---PSAS--QTDFDFVRELIEEDLIPDDVTIQ-VLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-C---CCCC--HHHHHHHHHHHHccCCCCCCEEE-EEcCCChhhHHHHHHHhCCC
Confidence 4789999999999999999998774 2 3222 2223555555333 33332 2233344556777776 66
Q ss_pred C--eeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe---eeEeEeeec-C---CCHHHHHHHHHHHHhcC-C
Q psy14485 170 D--YYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN---ICCGGIIGL-S---ESRDQRAELIFQLANLN-P 236 (348)
Q Consensus 170 ~--~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~---i~~~~i~Gl-g---et~e~~~~~l~~l~~l~-~ 236 (348)
+ .+.+.+-+++... +.++++ ...+...+.++.+++.|+. ...+..|+. . -.++.+.+.++.+.+.. .
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~ 171 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQP 171 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcC
Confidence 5 5777776665443 345543 2456667788889998875 223445554 1 23566667777766651 0
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---eC
Q psy14485 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---YG 309 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~~ 309 (348)
.++.+. . +-.+.|- ...+|.++.+++...+..+|.. .+.++..-|| +.--....++.+||+.+- .|
T Consensus 172 g~~~~~--~-i~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g 244 (284)
T cd07942 172 TPENKI--I-LNLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGTLFG 244 (284)
T ss_pred CCCcce--E-EEccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEeeCcc
Confidence 122111 1 1123442 3567888889998888888763 2334322232 122345568999999982 11
Q ss_pred CeeccCCCCCchHHHHHHHHcCCC
Q psy14485 310 DKLLTTDNTKTNDDSKLLKKLGIN 333 (348)
Q Consensus 310 ~~~~~~~g~~~~~~~~~i~~~G~~ 333 (348)
-- -...+...+++..+++..|+.
T Consensus 245 ~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 245 NG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred CC-ccccchhHHHHHHHHHhcCCC
Confidence 10 012233457788888888875
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.92 E-value=8.2 Score=36.21 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCH-HHHHHHHHHHHH
Q psy14485 131 DLDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDY-ENRLNTLKNVRN 204 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~-~~~~~~i~~~~~ 204 (348)
..+.+.+.++.+++ .+..+.++.+..+. +.++.+.++|++.+.+++-..+. -.... +... +.+.+.++.+++
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~ 162 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKS 162 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHh
Confidence 46777777777654 35677777654444 45667778899999987743111 01111 2223 346677777776
Q ss_pred c-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC------CCCCCCC---CCCCHHHHHHHHHHHHH
Q psy14485 205 V-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK------GTPLYGS---SILDPLEFIRTIAVARI 274 (348)
Q Consensus 205 ~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~------gT~l~~~---~~~~~~~~~~~~a~~R~ 274 (348)
. .+++.+-+-. ...+..+..+.+.+.+ .+.+.+..-.+.. ..++... .+......++++...+.
T Consensus 163 ~~~iPV~vKl~p----~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~ 236 (334)
T PRK07565 163 AVSIPVAVKLSP----YFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG 236 (334)
T ss_pred ccCCcEEEEeCC----CchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh
Confidence 4 4554443221 1235666677777787 7777654332211 0111111 11112233444444443
Q ss_pred HCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCc
Q psy14485 275 TMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINT 334 (348)
Q Consensus 275 ~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p 334 (348)
.+ ...|-.++|-.+ .+.....+.+||+.+..+.-+ -..|+.. +++.+++.+.||.=
T Consensus 237 ~~-~ipIig~GGI~s--~~Da~e~l~aGA~~V~v~t~~-~~~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 237 RV-GADLAATTGVHD--AEDVIKMLLAGADVVMIASAL-LRHGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred hc-CCCEEEECCCCC--HHHHHHHHHcCCCceeeehHH-hhhCcHHHHHHHHHHHHHHHHcCCCC
Confidence 33 223434444333 233445677999999665322 1234432 56778888999863
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.91 E-value=4.6 Score=36.18 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCC--CcccH----HHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWREL--KDRDL----DNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~--~~~~~----~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
+.|++...++..+..|++-+ .+|. ..| +++++ +.=+.++++.++ .|+.+. ...++.+.++...++ +|-
T Consensus 57 s~E~i~~~A~~vk~~Ga~~l-RGga-fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv--tEvm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKAL-RGGA-FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV--TEVMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhhc-cCCc-CCCCCCcccccccCHHHHHHHHHHHHHcCCeeE--EEecCHHHHHHHHhh-hhH
Confidence 45788888888888887644 2222 222 11111 223344444443 577764 335777778887777 676
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc--ccc
Q psy14485 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN--LVQ 248 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~--l~P 248 (348)
+.+|. .-++.+..++++|-. --.-+==|++.|.|+++...+++.+-+ +.+.|-... ..-
T Consensus 132 lqvGA-----------------RNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCERGIRtf 193 (286)
T COG2876 132 LQVGA-----------------RNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCERGIRTF 193 (286)
T ss_pred HHhcc-----------------cchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEecccccc
Confidence 66544 112334555666532 222334477889999999999988877 222221111 111
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHH--CCC-CceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARIT--MPT-SRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~--lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
...|++. -.+..+.++|.. ||= +.+.=++||..+-..+...++.+|||++|.+.
T Consensus 194 e~~TRnt--------LDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEV 250 (286)
T COG2876 194 EKATRNT--------LDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEV 250 (286)
T ss_pred cccccce--------echHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEe
Confidence 1233321 122344455543 232 11223466666656778889999999998754
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.79 E-value=7.4 Score=35.39 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=104.0
Q ss_pred EEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccC-C--C-CCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHH
Q psy14485 150 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-S--T-RDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 150 ~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~--~-~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~ 224 (348)
.+-+|..+.-......++|+..+.++=-+ +-..++ | + -++++++..++.+.+ ..+++.+++=-|+|+ ....
T Consensus 20 ~~~pg~~d~~sA~la~~aGF~al~~sg~~---vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nv 95 (289)
T COG2513 20 LVLPGAWDAGSALLAERAGFKALYLSGAG---VAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNV 95 (289)
T ss_pred EEecCCcCHHHHHHHHHcCCeEEEeccHH---HHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHH
Confidence 33588899999999999999998853211 111222 2 2 268999999988876 589999999999998 9999
Q ss_pred HHHHHHHHhcCCCCCeeecc-cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc--eec-c--ccccccch--hhHH
Q psy14485 225 AELIFQLANLNPYPESVPIN-NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR--IRM-S--AGRKEMGE--TTQA 296 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~-~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~--i~~-s--~g~~~l~~--~~~~ 296 (348)
.++++.+.+.+ ...+.+- ...|..-.-+.+.+..+.++..+.+..++..-++.. |-+ . .+...+.. +-..
T Consensus 96 artV~~~~~aG--~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~ 173 (289)
T COG2513 96 ARTVRELEQAG--AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQ 173 (289)
T ss_pred HHHHHHHHHcC--cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHH
Confidence 99999999998 5555542 234443233344556788999999999888777532 211 1 11111221 2234
Q ss_pred HHHHhCcceeeeC
Q psy14485 297 FCFLAGANSIFYG 309 (348)
Q Consensus 297 ~~l~~GAn~~~~~ 309 (348)
....+|||.++..
T Consensus 174 AY~eAGAD~if~~ 186 (289)
T COG2513 174 AYVEAGADAIFPE 186 (289)
T ss_pred HHHHcCCcEEccc
Confidence 4578999999654
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=92.78 E-value=16 Score=40.32 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=120.8
Q ss_pred cCHHHHHHHHHHHHh--CCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHH
Q psy14485 98 LSIESVITAAQKAKS--DGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~--~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e 159 (348)
+..++++..+..+.+ .|+-.+-+-||-+.. ...+++++..+=+.+....+..-+. +..+-+.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 445677777776665 377777565552210 1123333333333332222222111 2233345
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee-------c-CCCHHHHHHHHHHH
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-------L-SESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G-------l-get~e~~~~~l~~l 231 (348)
.++...+.|+|.+.+ |+.+ ...+....+++.+++.|..+...+.|- - ..|.+.+++..+.+
T Consensus 630 f~~~~~~~Gidifri--------fD~l---N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRV--------FDSL---NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEE--------CccC---cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 666777788886642 3332 467888889999999999887777774 2 45788888999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeee
Q psy14485 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~ 308 (348)
.+++ .+.+.+ +.| ....+|.....++...|..+ +..|.+- .|+ +..-....|+.+||+.+-.
T Consensus 699 ~~~G--ad~I~i------kDt----~Gll~P~~~~~Lv~~lk~~~-~~pi~~H--~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 699 EKAG--AHILGI------KDM----AGLLKPAAAKLLIKALREKT-DLPIHFH--THDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred HHcC--CCEEEE------CCC----cCCcCHHHHHHHHHHHHHhc-CCeEEEE--ECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9988 666543 222 23567788888888888765 3223221 121 2223345588999999822
Q ss_pred CCeeccCCCCC----chHHHHHHHHcCCC
Q psy14485 309 GDKLLTTDNTK----TNDDSKLLKKLGIN 333 (348)
Q Consensus 309 ~~~~~~~~g~~----~~~~~~~i~~~G~~ 333 (348)
.. ...+|.+ .+.....++..|+.
T Consensus 764 ai--~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 764 AV--DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred cc--hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 11 1112222 36777888887776
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=92.64 E-value=6.3 Score=34.19 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=103.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++....++.+.+.|++.+-++-. ++ .-.+.++.+++....+.+-.| .++.+.++...++|.+-+ +
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~--t~------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-v 85 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLR--TP------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-V 85 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCC--Cc------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998877532 22 344556666653334555555 688999999999999865 3
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+..+.+ |+.|+.. +.+++ .+.+.++|-....|.
T Consensus 86 sP~~~~----------------~v~~~~~~~~i~~iPG~~-----TptEi~~----A~~~G--a~~vKlFPA~~~GG~-- 136 (204)
T TIGR01182 86 SPGLTP----------------ELAKHAQDHGIPIIPGVA-----TPSEIML----ALELG--ITALKLFPAEVSGGV-- 136 (204)
T ss_pred CCCCCH----------------HHHHHHHHcCCcEECCCC-----CHHHHHH----HHHCC--CCEEEECCchhcCCH--
Confidence 322222 567888999998766533 6666544 44566 677766652211111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..+...+-.+|+..+-.++|- + .+.-...|.+|+..+..|..+.
T Consensus 137 ------------~yikal~~plp~i~~~ptGGV-~--~~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 137 ------------KMLKALAGPFPQVRFCPTGGI-N--LANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ------------HHHHHHhccCCCCcEEecCCC-C--HHHHHHHHhCCCEEEEEChhhc
Confidence 234445556777544434432 1 2333446899999997776553
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.5 Score=43.28 Aligned_cols=120 Identities=12% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
+++.+.++.+.+.|++.|.+.... . .-..+.++++.||+....+.+-.| ..+.|..+.|.++|+|.|.+|+.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~-~----~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH-G----HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC-C----ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 456677778888899998876541 1 136889999999986444444453 678999999999999999988887
Q ss_pred C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy14485 179 S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 179 ~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
+ -..+..+.. -.+..+.++.+.+++.|.++.++ |--.+..++.+.+.
T Consensus 301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 3 222222222 25566777777777888775443 22356777776664
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.4 Score=41.45 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-C--
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-S-- 179 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~-- 179 (348)
.+.++.+.+.|++-++|.+. +. ..++..+.++.+++...++.+-.| ..|.+..+.|.++|+|.|-+|+.. +
T Consensus 110 ~er~~~L~~agvD~ivID~a--~g---~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiC 184 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSA--HG---HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSIC 184 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-S--ST---TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTB
T ss_pred HHHHHHHHHcCCCEEEcccc--Cc---cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccc
Confidence 55556677789999988765 11 226788899999885333333333 689999999999999999999876 4
Q ss_pred -HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy14485 180 -PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 180 -~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
.+.-..++.+ ....+.++-+.++++|+++.++. =-.+.-|+...|-
T Consensus 185 tTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADG---Gi~~sGDi~KAla 231 (352)
T PF00478_consen 185 TTREVTGVGVP-QLTAVYECAEAARDYGVPIIADG---GIRTSGDIVKALA 231 (352)
T ss_dssp HHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEES---S-SSHHHHHHHHH
T ss_pred ccccccccCCc-HHHHHHHHHHHhhhccCceeecC---CcCcccceeeeee
Confidence 2333334333 56678888899999998887762 1245667766653
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.32 E-value=7.7 Score=34.42 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
.+.++...+.|++.+++++-. ........+.+.++++. .+.++.+-.|..+.+.++.|.++|++|+.+|-=.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~---~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a--- 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA---TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA--- 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh---CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce---
Confidence 444556677899999887631 11222333333333333 4677888899999999999999999999976422
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCee--eEe------Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNVGINI--CCG------GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~------~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
-++++...+ .+++.|-++ ..+ .+=|- ..+.-+..+.++.+.+.+ ..++- +.-+-..||
T Consensus 108 -------v~~p~~v~~---~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~ii-~TdI~~DGt 174 (241)
T COG0106 108 -------VKNPDLVKE---LCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHIL-YTDISRDGT 174 (241)
T ss_pred -------ecCHHHHHH---HHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeEE-EEecccccc
Confidence 112333322 334444222 222 12233 223335666777777776 44543 333445666
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh-CcceeeeCC
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGD 310 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~-GAn~~~~~~ 310 (348)
- ..++.+-+.++.... +..+.+|+|-..+. +... .-.. |+.+++.|.
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~-Di~~-l~~~~G~~GvIvG~ 222 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLD-DIKA-LKELSGVEGVIVGR 222 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHH-HHHH-HHhcCCCcEEEEeh
Confidence 3 334555444444433 33455666644432 2222 2223 888887765
|
|
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.04 E-value=15 Score=37.10 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHHHHHHHHH----h
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNENQAYRLKK----V 167 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e~l~~Lk~----a 167 (348)
.++.++=++.++.+.+.|++.|-.+ + |...+.+ .+.++.+.+. +..+++-. ......++.-.+ +
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~G--f--P~~s~~e--~e~v~~i~~~~~~~~~~~i~~l~-r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVG--F--PSASQTD--FDFVRELIEEGLIPDDVTIQVLT-QAREHLIERTFEALEGA 120 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE--C--CCcChHH--HHHHHHHHHhcCCCCCCEEEEEe-ccchhHHHHHHHHhcCC
Confidence 4789999999999999999998764 1 2222222 3455555332 34443211 222233444444 4
Q ss_pred CCCeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee---eEeEeeecC----CCHHHHHHHHHHHHhc-CC
Q psy14485 168 GLDYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI---CCGGIIGLS----ESRDQRAELIFQLANL-NP 236 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i---~~~~i~Glg----et~e~~~~~l~~l~~l-~~ 236 (348)
+..++.+.+-+++.+.+ .+++. ...+...++++.+++.|... ...+.|+.. -.++.+.+.++.+.+. +.
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~a 200 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQP 200 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcC
Confidence 44468877777755443 45433 24555677788888888532 244455552 2456666666766553 21
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e-
Q psy14485 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y- 308 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~- 308 (348)
..+... .+-.|.|- ...+|.++.+++...+..+|+. .+.++..-|| +.--....|+.+||+.+= .
T Consensus 201 g~~~~~---~i~l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG 273 (552)
T PRK03739 201 TPERKV---ILNLPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFG 273 (552)
T ss_pred CCCcee---EEEeccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCc
Confidence 133211 11145553 4567888889998888888742 2333322233 222345668999999982 1
Q ss_pred -CCeeccCCCCCchHHHHHHHHcCCC
Q psy14485 309 -GDKLLTTDNTKTNDDSKLLKKLGIN 333 (348)
Q Consensus 309 -~~~~~~~~g~~~~~~~~~i~~~G~~ 333 (348)
|+| +.+...+++.-.++..|+.
T Consensus 274 ~GER---aGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 274 NGER---TGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred Cccc---ccChhHHHHHHHHHhcCCC
Confidence 221 2233346666666667775
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=91.77 E-value=7.7 Score=33.22 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecC--CCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLG--MLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g--~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++++..+.++.+.+. ++.+-++.. . ....=.+.++.+++. ++.+.+... ......++.+.++|.+.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~----~--~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTP----L--IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCH----H--HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 4678888888888776 777655211 0 111114556666653 445444322 2233467899999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..++.+ +...+.++.+++.|+.+... +.+ -.|.++... +...+ .+.+.+++-.. +++
T Consensus 83 ~h~~~~~------------~~~~~~i~~~~~~g~~~~v~-~~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~~- 140 (202)
T cd04726 83 VLGAAPL------------STIKKAVKAAKKYGKEVQVD-LIG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQA- 140 (202)
T ss_pred EEeeCCH------------HHHHHHHHHHHHcCCeEEEE-EeC-CCCHHHHHH----HHHCC--CCEEEEcCccc-ccc-
Confidence 6554421 23345677888888765433 233 345666543 33445 67666642211 111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. . .+...+...++... ++..+.+.+|- +++....++.+|||.+..|..+
T Consensus 141 ~-~-~~~~~~~i~~~~~~-----~~~~i~~~GGI---~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 141 A-G-GWWPEDDLKKVKKL-----LGVKVAVAGGI---TPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-C-CCCCHHHHHHHHhh-----cCCCEEEECCc---CHHHHHHHHhcCCCEEEEeehh
Confidence 1 1 12233333222221 34445444442 2344556789999999888655
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=6.3 Score=35.20 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cCCC-C-HHHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML-N-ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g~l-~-~e~l~~Lk~aG~~~i~~ 174 (348)
..+.+.+.++.+++.|+..|.|+--. .....+.+.+.++++.... ++++.+ .... + .+-++.|.+.|+++|.-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~-~dg~vD~~~~~~Li~~a~~--~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT 147 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLD-VDGHVDMPRMRKIMAAAGP--LAVTFHRAFDMCANPLNALKQLADLGVARILT 147 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC-CCCCcCHHHHHHHHHHhcC--CceEEechhhccCCHHHHHHHHHHcCCCEEEC
Confidence 45777788888899999999886542 2234678888888888764 444443 2322 2 35689999999999873
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHH
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAEL 227 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~ 227 (348)
+ +...+..+-++.++.+.+ ++ .. . +|.|-|=+.+.+.+.
T Consensus 148 S-----------Gg~~~a~~g~~~L~~lv~~a~-~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 148 S-----------GQQQDAEQGLSLIMELIAASD-GP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred C-----------CCCCCHHHHHHHHHHHHHhcC-CC-E-EEeCCCCCHHHHHHH
Confidence 2 111234444555555544 33 21 2 888888888876654
|
|
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.1 Score=42.47 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CHHH
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SPKL 182 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~ 182 (348)
...+.+.+.|++-|+|.+.- . .-.+..++++.+|+..++..+-.| .++.+..+.|.++|+|.+.+|+.+ +--+
T Consensus 254 ~rl~ll~~aGvdvviLDSSq-G----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCi 328 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQ-G----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICI 328 (503)
T ss_pred HHHHHhhhcCCcEEEEecCC-C----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceee
Confidence 34456678899999987652 1 225788999999997666665555 689999999999999999999987 5222
Q ss_pred Hhc---cCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy14485 183 YGD---IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 183 l~~---i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
-+. .+++ ....+.++.+.|+..|+++-++. --++..++...+
T Consensus 329 Tqevma~Grp-Q~TAVy~va~~A~q~gvpviADG---Giq~~Ghi~KAl 373 (503)
T KOG2550|consen 329 TQKVMACGRP-QGTAVYKVAEFANQFGVPCIADG---GIQNVGHVVKAL 373 (503)
T ss_pred eceeeeccCC-cccchhhHHHHHHhcCCceeecC---CcCccchhHhhh
Confidence 222 1222 23467888999999999876652 124555555444
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=91.25 E-value=9.8 Score=33.48 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=94.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
.+.++.+.+.|.+.|.++|. . ....+.+.++++.+|+..+++.+-||..+.=. -++|.+.+- .++
T Consensus 17 ~~~~~~~~~~gtdai~vGGS-~---~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~------~~aDa~l~~-----svl 81 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGS-Q---GVTYEKTDTLIEALRRYGLPIILFPSNPTNVS------RDADALFFP-----SVL 81 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCC-C---cccHHHHHHHHHHHhccCCCEEEeCCCccccC------cCCCEEEEE-----Eee
Confidence 34555667778888877654 2 23557899999999987788877666332100 246666642 122
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCee--eEeEeeecCC-------------CHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 184 GDIISTRDYENRLNTLKNVRNVGINI--CCGGIIGLSE-------------SRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~~i~Glge-------------t~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.-++..-...-.+++...++.+..+ ...++++.|. +.+++........++ ..+..+..
T Consensus 82 Ns~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~------~g~~~vYl 155 (223)
T TIGR01768 82 NSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEM------LGMPIIYL 155 (223)
T ss_pred cCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHH------cCCcEEEE
Confidence 21111111123345556666666643 3556666532 344555554444443 12333333
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
.-|+-..+. .++ +++...|..+++..+.+..|-.+ .+.....+.+||+.++.|.
T Consensus 156 E~gs~~g~~--v~~----e~i~~v~~~~~~~pl~vGGGIrs--~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 156 EAGSGAPEP--VPP----ELVAEVKKVLDKARLFVGGGIRS--VEKAREMAEAGADTIVTGN 209 (223)
T ss_pred EecCCCCCC--cCH----HHHHHHHHHcCCCCEEEecCCCC--HHHHHHHHHcCCCEEEECc
Confidence 333333221 112 34455555554555655554322 3445557788999998875
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.4 Score=39.29 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--C
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 179 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et--~ 179 (348)
+.++.++.+.+.|++++++.+-... ......-.++++.+.+.-.++.+-.|..+.+.++.+.++|++++.+|-++ +
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a--~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~ 108 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA--IENSVENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc--ccCCcchHHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 3355556667789999999875211 11223345566666543257777889999999999999999999887765 2
Q ss_pred HHHHhc
Q psy14485 180 PKLYGD 185 (348)
Q Consensus 180 ~e~l~~ 185 (348)
+++++.
T Consensus 109 p~~l~~ 114 (241)
T PRK14114 109 PSFLKF 114 (241)
T ss_pred HHHHHH
Confidence 555443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.04 E-value=8.6 Score=36.62 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe
Q psy14485 130 RDLDNIENMICEVKKIGLETCLTLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
.+.+.+.++++.+++.++.+.+..+. -..+.++.+.++|++-+.+.--+....| ...... +.+..+..++.+++
T Consensus 116 ~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~--~sg~~~---p~~l~~~i~~~~IP 190 (369)
T TIGR01304 116 LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEH--VSTSGE---PLNLKEFIGELDVP 190 (369)
T ss_pred cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc--cCCCCC---HHHHHHHHHHCCCC
Confidence 35678899999999876555444443 3457889999999999886543322222 111223 34444555566776
Q ss_pred eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCC-----cee
Q psy14485 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-YGSSILDPLEFIRTIAVARITMPTS-----RIR 282 (348)
Q Consensus 209 i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l-~~~~~~~~~~~~~~~a~~R~~lp~~-----~i~ 282 (348)
+- .|-.-|.++..+.+ +.+ ++.|.+..---.. |.. .....+......+..+..|.++... .+-
T Consensus 191 VI----~G~V~t~e~A~~~~----~aG--aDgV~~G~gg~~~-~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVI 259 (369)
T TIGR01304 191 VI----AGGVNDYTTALHLM----RTG--AAGVIVGPGGANT-TRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVI 259 (369)
T ss_pred EE----EeCCCCHHHHHHHH----HcC--CCEEEECCCCCcc-cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 53 34455666654443 356 6776522111000 111 1112233334444555555554332 233
Q ss_pred ccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 283 MSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 ~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+.+|-.+ ...-..++.+||+.++.|..+
T Consensus 260 AdGGI~t--g~di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 260 ADGGIET--SGDLVKAIACGADAVVLGSPL 287 (369)
T ss_pred EeCCCCC--HHHHHHHHHcCCCEeeeHHHH
Confidence 4444322 233455889999999876543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=3.1 Score=38.82 Aligned_cols=113 Identities=10% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHHh--CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CH--
Q psy14485 107 AQKAKS--DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SP-- 180 (348)
Q Consensus 107 ~~~~~~--~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~-- 180 (348)
++.+.+ .|++.|++... + -.-+...++++.+|+....+.+-.| ..|.|..+.|.++|+|.+-+|+.. +-
T Consensus 113 ~~~L~~~~~g~D~iviD~A--h---Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 113 TKQILALSPALNFICIDVA--N---GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHhcCCCCCEEEEECC--C---CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 344444 48888888654 1 1236889999999986444444444 679999999999999999888775 31
Q ss_pred -HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy14485 181 -KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 181 -e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
++-..++.+ ....+.++-+.+++.|.++.++.= -.+.-|+...+
T Consensus 188 Tr~vtGvG~P-QltAV~~~a~~a~~~gvpiIADGG---i~~sGDI~KAl 232 (346)
T PRK05096 188 TRVKTGVGYP-QLSAVIECADAAHGLGGQIVSDGG---CTVPGDVAKAF 232 (346)
T ss_pred CccccccChh-HHHHHHHHHHHHHHcCCCEEecCC---cccccHHHHHH
Confidence 111122222 456778888889999988766521 13445565554
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.5 Score=39.05 Aligned_cols=180 Identities=10% Similarity=0.081 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 99 SIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 99 ~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+|.+ .++.+.+ .|++++++.+-... ....+.-.++++.+.+ .++++.+-.|..+.|.++.+.++|++++.+|-
T Consensus 32 dp~~---~a~~~~~~~Ga~~l~ivDLd~a--~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 32 SAEE---SIAYYSQFECVNRIHIVDLIGA--KAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred CHHH---HHHHHHhccCCCEEEEEECccc--ccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 5545 4455556 58999999864211 1122233555655554 46788888999999999999999999999887
Q ss_pred CC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 177 DT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 177 et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++ ++++++.+. +..-+ .+-++.+. +.|. ..+.-+..+.+..+.+++ ...+-+.. +
T Consensus 107 ~a~~~~~~l~~~~------------~~fg~-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~td-i 170 (234)
T PRK13587 107 KGIQDTDWLKEMA------------HTFPG-RIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIP--LGGIIYTD-I 170 (234)
T ss_pred hHhcCHHHHHHHH------------HHcCC-CEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcC--CCEEEEec-c
Confidence 66 355554331 11111 12233332 2222 233334566666666676 44443332 2
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
-..||- ..++.+.+.++.. . .+..+.+++|-.+. .+. ...+..|++.++.|.
T Consensus 171 ~~dGt~----~G~~~~li~~l~~----~-~~ipvi~~GGi~s~-edi-~~l~~~G~~~vivG~ 222 (234)
T PRK13587 171 AKDGKM----SGPNFELTGQLVK----A-TTIPVIASGGIRHQ-QDI-QRLASLNVHAAIIGK 222 (234)
T ss_pred cCcCCC----CccCHHHHHHHHH----h-CCCCEEEeCCCCCH-HHH-HHHHHcCCCEEEEhH
Confidence 234442 2233332222221 1 23345556553332 223 335678999997764
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=90.91 E-value=17 Score=35.47 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=97.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C-cEEE--EecCCCCHHHHHHHHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G-LETC--LTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~-~~i~--~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
..++++.++.++.+.+.|++.|.++ . + .......+.++.+++. + ..+. +..-......++.+.++|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g---~-p--~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV 85 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAG---T-P--LIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIV 85 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeC---C-H--HHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEE
Confidence 3678899999998888999888762 1 1 1113345666666553 2 1222 1222224558999999999998
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+--++++ ....+.++.+++.|+.+..++ +. .+|..+ .+..+.+++ .+.+.+.+... +.
T Consensus 86 ~v~g~~~~------------~~~~~~i~~a~~~G~~~~~g~-~s-~~t~~e---~~~~a~~~G--aD~I~~~pg~~--~~ 144 (430)
T PRK07028 86 CILGLADD------------STIEDAVRAARKYGVRLMADL-IN-VPDPVK---RAVELEELG--VDYINVHVGID--QQ 144 (430)
T ss_pred EEecCCCh------------HHHHHHHHHHHHcCCEEEEEe-cC-CCCHHH---HHHHHHhcC--CCEEEEEeccc--hh
Confidence 85322221 123567788888888764432 11 234322 245555676 78886553221 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.+ .+...+ .+...+..++ ..|-+.+| +..+.....+.+||+.+..|..+.
T Consensus 145 ~~----~~~~~~---~l~~l~~~~~-iPI~a~GG---I~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 145 ML----GKDPLE---LLKEVSEEVS-IPIAVAGG---LDAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred hc----CCChHH---HHHHHHhhCC-CcEEEECC---CCHHHHHHHHHcCCCEEEEChHHc
Confidence 11 112222 2222222222 22322332 223445567899999998887654
|
|
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=90.89 E-value=12 Score=33.71 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
..+++.+++.++...+.|+.-+=++++. . .....+.+..++..+++. ++. ++..+.+.+.++.-.++ |.+-|+
T Consensus 22 ~~~~d~~~~~A~~~~~~GAdiIDIG~~~-~-~~~~~ee~~r~v~~i~~~~~~p--iSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVEGGAQILDLNVDY-G-GLDGVSAMKWLLNLLATEPTVP--LMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHHHhcCCc--EEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 4688999999999999999998887752 1 222345555665556553 444 46778888888876666 877655
Q ss_pred ccCCCCHHHHhccCCCCCH-HHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 174 HNLDTSPKLYGDIISTRDY-ENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~-~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
++ ... .+ +...+.+..++++|..+..--+ -|..+|.++..+.+..+.+.-..-..++-..++.-|
T Consensus 98 -sI----------s~~-~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDP 165 (252)
T cd00740 98 -SI----------NLE-DGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDP 165 (252)
T ss_pred -eC----------CCC-CCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 11 111 11 1222344667788876543323 345556665555444333210000112223344444
Q ss_pred CCCCCCCC-CCCHHHH---HHHHHHHHHHCCCCceec-----c-----ccccccchhhHHHHHHhCcceeee
Q psy14485 251 GTPLYGSS-ILDPLEF---IRTIAVARITMPTSRIRM-----S-----AGRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 251 gT~l~~~~-~~~~~~~---~~~~a~~R~~lp~~~i~~-----s-----~g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
|.-+.... .-+..+. ++.+...|..+|+..+-+ | +.|+.+..-+..++..+|.|+-+.
T Consensus 166 gig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~SnkSf~~~~~~r~~in~~f~~~a~~~Gl~~ai~ 237 (252)
T cd00740 166 LILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVSNVSFGFNPAAREALNSVFLYEAIKAGLDMAIV 237 (252)
T ss_pred CcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecccccCCCchhHHHHHHHHHHHHHHcccceeec
Confidence 43322110 0111123 334444444466543322 2 113333345666778888888754
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.7 Score=43.70 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEE--ecCC-----CCHHHHHHHHHhCCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCL--TLGM-----LNENQAYRLKKVGLD 170 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~g~-----l~~e~l~~Lk~aG~~ 170 (348)
+.++..+.++.+.+.|+++|+.+=. .+.......+.+.++++..++.++.+.+ |+.. .+.+.++.+++.|++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~ 91 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGID 91 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-S
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 5788899999999999998754322 1111123457788888888888888875 4432 334568899999999
Q ss_pred eeeccCC
Q psy14485 171 YYNHNLD 177 (348)
Q Consensus 171 ~i~~g~e 177 (348)
.+-+.-.
T Consensus 92 ~lRlD~G 98 (357)
T PF05913_consen 92 GLRLDYG 98 (357)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 8887543
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.6 Score=36.80 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHh--cCcEEEEecCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKK--IGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~--~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
.+.++.++.+++..+.|+.-|=++++.+.|.. ...+++..+++.+.+ .++.+ +..+...+.++.--++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~pl--SIDT~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPL--SIDTFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEE--EEEESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEE--EEECCCHHHHHHHHHcCc
Confidence 56788888899999999999999877433321 245577788888875 35555 455666777766666677
Q ss_pred Ceee
Q psy14485 170 DYYN 173 (348)
Q Consensus 170 ~~i~ 173 (348)
+-++
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6555
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.6 Score=42.12 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCeeeccCCCCHHHHhccCCCC-CHHHHHHHHHHHHHcC------CeeeEeEeeec-C----------CC
Q psy14485 159 NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR-DYENRLNTLKNVRNVG------INICCGGIIGL-S----------ES 220 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~-~~~~~~~~i~~~~~~G------~~i~~~~i~Gl-g----------et 220 (348)
+.++.|.++|++ ++..+ -++|+- +.++..++++.+.+.| +...+-+.+|+ . -|
T Consensus 168 ~~l~~l~~~~I~-~h~qi--------VlcPGiNDg~~L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~ 238 (433)
T TIGR03279 168 EQLKWFQERRLQ-LHAQV--------VVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVT 238 (433)
T ss_pred HHHHHHHHcCCe-EEEEE--------EEcCCcCCHHHHHHHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCC
Confidence 566777777765 33211 356664 6678888888888773 23345556676 3 25
Q ss_pred HHHHHHHHHHHHhcC
Q psy14485 221 RDQRAELIFQLANLN 235 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~ 235 (348)
.++-.+.+..+..++
T Consensus 239 ~e~A~~vi~~ie~~q 253 (433)
T TIGR03279 239 PECARRVIAQVEALQ 253 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.40 E-value=12 Score=33.13 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHH----HHHHHhCCCeeeccCCC-CH
Q psy14485 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQA----YRLKKVGLDYYNHNLDT-SP 180 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l----~~Lk~aG~~~i~~g~et-~~ 180 (348)
.++.+.+.|.++|.. ....+++.+.+..+++.+..+.++....+.+.+ +.+.+ +.+.+.+++.- .+
T Consensus 40 aa~~~~~~~~~ef~~--------~~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~ 110 (233)
T cd02911 40 AARKLVKRGRKEFLP--------DDPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQP 110 (233)
T ss_pred HHHHHHhcCCccccc--------cchHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcH
Confidence 345566777777632 124577777888777667777778766555543 33334 45888888876 56
Q ss_pred HHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 181 KLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 181 e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
++.+.=.. .++++...+.++.+++.++++++-+=.|. + ++..+..+.+.+.+ .+.+.+
T Consensus 111 ~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~--~-~~~~~la~~l~~aG--~d~ihv 171 (233)
T cd02911 111 EMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV--D-VDDEELARLIEKAG--ADIIHV 171 (233)
T ss_pred HHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc--C-cCHHHHHHHHHHhC--CCEEEE
Confidence 55543221 24788888888888888777665544443 3 55667777777877 776544
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor | Back alignment and domain information |
|---|
Probab=90.35 E-value=5.4 Score=38.03 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHH
Q psy14485 190 RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 269 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~ 269 (348)
.+.++..+..+.+++.|--+..-+- .|.-.+|+..-++...+++ +|. |+ .+|-||.. ..-....+.+.+
T Consensus 203 ApldE~~~Va~~Akk~gkGveaI~~--vGDGyddLI~G~~a~id~~--vDv-----fV-vEGgPFN~-a~dRl~aFakaV 271 (505)
T PF10113_consen 203 APLDEMEEVAELAKKYGKGVEAIMH--VGDGYDDLITGLKACIDMG--VDV-----FV-VEGGPFNR-AKDRLKAFAKAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEE--ecCChHHHHHHHHHHHhcC--CcE-----EE-EeCCCccc-chhHHHHHHHHH
Confidence 3789999999999998876544333 3677899999999998887 554 33 46778643 333567789999
Q ss_pred HHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy14485 270 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 270 a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
+++|++.|...+...+ -..+.-..+|++|-|.++.|
T Consensus 272 a~sRIL~pGkVVaTNG----AYEDEcRiGLRsGLN~iitG 307 (505)
T PF10113_consen 272 AASRILVPGKVVATNG----AYEDECRIGLRSGLNVIITG 307 (505)
T ss_pred HHheeeecCcEEecCC----cchHHHHHHHhhccceeecc
Confidence 9999999885443211 11345677999999999654
|
Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.1 Score=38.05 Aligned_cols=176 Identities=19% Similarity=0.137 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-- 178 (348)
+.++.++.+.+.|++++++.+-+.. ... ..-.++++++.+ ...++.+-.|..+.+.++.+.++|++++.+|-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~--~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGV--GNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCC--cchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 3455556677789999999875211 111 122377777766 3347788889999999999999999999988766
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeE-----ee--ecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 179 SPKLYGDIISTRDYENRLNTLKNVRNVG---INICCGG-----II--GLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~-----i~--Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+++.++.+ +++.| +-++.++ ++ |..++.-+..+.+..+.+++ ...+-+... -
T Consensus 108 ~p~~~~~~---------------~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g--~~~ii~tdI-~ 169 (232)
T PRK13586 108 NFNLFHDI---------------VREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELE--LLGIIFTYI-S 169 (232)
T ss_pred CHHHHHHH---------------HHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcC--CCEEEEecc-c
Confidence 35555432 22222 1222222 22 22223335667777777776 555544332 2
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
..||- ..++.+ .++.+ +.. +.. +-+++|-.++ .+.... ...|++..+.|.
T Consensus 170 ~dGt~----~G~d~e-l~~~~---~~~-~~~-viasGGv~s~-~Dl~~l-~~~G~~gvivg~ 219 (232)
T PRK13586 170 NEGTT----KGIDYN-VKDYA---RLI-RGL-KEYAGGVSSD-ADLEYL-KNVGFDYIIVGM 219 (232)
T ss_pred ccccC----cCcCHH-HHHHH---HhC-CCC-EEEECCCCCH-HHHHHH-HHCCCCEEEEeh
Confidence 35553 223433 33333 222 444 4456654443 233333 367999887664
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=12 Score=32.77 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C--cEEEEecC-CCCHHHHHHHHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G--LETCLTLG-MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~--~~i~~~~g-~l~~e~l~~Lk~aG~~~i 172 (348)
..+.++.+..++.+.+.|++.+-++-- ++ .-.+.++.+++. + ..+.+-.| .++.+.++...++|.+.+
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~--~~------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYT--NP------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC--Cc------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 457899999999999999998766432 22 233555555542 2 24655566 678999999999998754
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
- +.-.++ +.++.+++.|+.+-.+ -.|+.++...+ +.+ .+.+.+++ ..
T Consensus 93 v-sP~~~~----------------~v~~~~~~~~i~~iPG-----~~T~~E~~~A~----~~G--ad~vklFP-----a~ 139 (213)
T PRK06552 93 V-SPSFNR----------------ETAKICNLYQIPYLPG-----CMTVTEIVTAL----EAG--SEIVKLFP-----GS 139 (213)
T ss_pred E-CCCCCH----------------HHHHHHHHcCCCEECC-----cCCHHHHHHHH----HcC--CCEEEECC-----cc
Confidence 3 222222 3366788899876544 23677665543 576 78888633 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+ ..+ ..+...+-.+|+..+-..+|- ..+.....+.+||+.+..|..+
T Consensus 140 ~------~G~----~~ik~l~~~~p~ip~~atGGI---~~~N~~~~l~aGa~~vavgs~l 186 (213)
T PRK06552 140 T------LGP----SFIKAIKGPLPQVNVMVTGGV---NLDNVKDWFAAGADAVGIGGEL 186 (213)
T ss_pred c------CCH----HHHHHHhhhCCCCEEEEECCC---CHHHHHHHHHCCCcEEEEchHH
Confidence 1 122 234455666776544444432 2233445689999999766554
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.62 Score=40.92 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++-. .-+.+.++.-++.|.+
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFi-DPd~~qi~~A~~~GAd 146 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDV-AGQAEKLKPIIERLKDAGIRVSLFI-DPDPEQIEAAKEVGAD 146 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh-hcCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46677665443 3456666521 1111 2356889999999999998876544 3567899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHH
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~ 224 (348)
+|.+.-+.-.+.+..-.....++...++.+.+++.|+.++++ +|=+++.+
T Consensus 147 ~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAG----HgLny~Nv 196 (234)
T cd00003 147 RVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAG----HGLNYENV 196 (234)
T ss_pred EEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHHH
Confidence 998755441111111001124567777888888899888765 55555544
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=24 Score=39.05 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=117.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
.+.+.+++.++...+.|..-+=+..|. +.....+.+..++..+... ...+-++..+...+.++.--++ |..-|+
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~--~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IIN 458 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDE--GMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVN 458 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEE
Confidence 577899999999999999888776552 2222344555555555531 1233346777888888766666 766555
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHhc-----CCCCCeeecccc
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANL-----NPYPESVPINNL 246 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~l-----~~~~~~i~~~~l 246 (348)
.+.-...-+...+.+..++++|..+...-+ -|.-.|.++.++..+.+.+. +-.++.|.|-++
T Consensus 459 -----------SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dpl 527 (1229)
T PRK09490 459 -----------SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFDPN 527 (1229)
T ss_pred -----------eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCC
Confidence 111110112344667888899987765545 46667888887776554443 322445555555
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-----ccc-------cccccchhhHHHHHHhCcceeee
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR-----MSA-------GRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-----~s~-------g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
+-.-+|-...+ .....+.++.+...+..+|..++. +|- .|+.++.-+-+.++.+|-|.-+.
T Consensus 528 v~~v~t~~ee~-~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld~aIv 600 (1229)
T PRK09490 528 IFAVATGIEEH-NNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGIV 600 (1229)
T ss_pred cceeecChHHH-HHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcchhhc
Confidence 43333332211 224567777777778888875432 221 24444455667788888887643
|
|
| >KOG2367|consensus | Back alignment and domain information |
|---|
Probab=90.16 E-value=19 Score=35.05 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=114.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG---MLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g---~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+++++-++.++.+.+.|+..|-++.- ..+..+++...-+++.+ ...+.+++..- ..-+-.++.|+.|.--+|.
T Consensus 75 ~~~~~qK~eiar~L~~~gvd~IEv~fP--~aSe~~~~~~~~i~k~~-g~~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh 151 (560)
T KOG2367|consen 75 FLTTEQKLEIARQLAKLGVDIIEVGFP--VASEQDFEDCKTIAKTL-GYVPVICTLIRCHMDDIERTVEALKYAKRPRVH 151 (560)
T ss_pred cCCcHHHHHHHHHHHhcCcCEEEecCc--ccCcchHHHHHHHHHhC-CCCceEEEeeccchHHHHHHHHHhhccCcceEE
Confidence 378899999999999999999866432 12334555555555543 33445544332 2223345666655555577
Q ss_pred ccCCCCHHHHhccCCCCCH----HHHHHHHHHHHHcCCeeeEeEeeec---CC-CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 174 HNLDTSPKLYGDIISTRDY----ENRLNTLKNVRNVGINICCGGIIGL---SE-SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~----~~~~~~i~~~~~~G~~i~~~~i~Gl---ge-t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+-+-|++ +++++.-+++. +-..+.++.++++|. .++=|+. +. ..+.+.+.+..+.+.+ ...+.
T Consensus 152 ~~~aTSd-~~rey~~~kskeevi~~Ave~ikfvkslg~---~~ieFSpEd~~rse~~fl~eI~~aV~Kag--~~tvn--- 222 (560)
T KOG2367|consen 152 VFIATSD-IHREYKLKKSKEEVIESAVEVIKFVKSLGK---WDIEFSPEDFGRSELEFLLEILGAVIKAG--VTTVN--- 222 (560)
T ss_pred EEecccH-HHHHHHhcccHHHHHHHHHHHHHHHHhccc---ceEEECccccccCcHHHHHHHHHHHHHhC--Ccccc---
Confidence 6666664 44444434444 445677888888884 2223333 22 3466677777777776 33321
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
.|.|. ...+|.++.+++..++--.|.. .+-++..-|| +.--..+.++.+||+.+
T Consensus 223 ---ipdTV----gia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 223 ---IPDTV----GIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred ---Cccee----cccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 24442 3457788999999998877774 3334432233 11335677899999998
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.15 E-value=9.3 Score=34.99 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHH-Hh
Q psy14485 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLK-KV 167 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk-~a 167 (348)
.+..+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....|. .+++..+.+. +-
T Consensus 89 ~i~~ai~~GftSVMiDgS-~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 89 DIKKKVRAGIRSVMIDGS-HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHcCCCeEEecCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 334566779999988776 2333445666677777777777777654321 1345555444 57
Q ss_pred CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
|+|.+-+++.|.--.|+. .|..+++ +++.|+.. .++++ ++-|- |-..+++ +.+.+++ +..|.+..
T Consensus 168 gvD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~--~~iPL---VlHGgSG~~~e~~----~kai~~G--i~KiNi~T 233 (284)
T PRK12737 168 GIDSLAVAIGTAHGLYKG-EPKLDFE-RLAEIREK--VSIPL---VLHGASGVPDEDV----KKAISLG--ICKVNVAT 233 (284)
T ss_pred CCCEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHH----HHHHHCC--CeEEEeCc
Confidence 999999999986556653 3344555 33333322 25554 44555 5555554 4445666 55555543
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.6 Score=37.51 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=79.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--------cCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--------LGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--------~g~l~~e~l~~Lk~aG~ 169 (348)
+++..+.+.++.+.++ ++.+-|++|. ....+.+.+.+.++..++.++.++.- .-..-++.++.+++.|+
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt--~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf 98 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGT--SALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGF 98 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTG--GGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCce--eeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCC
Confidence 4566665555444333 7888898873 23345577899999999888888631 11233578999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecC-------CCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-------ESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glg-------et~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.|. .-+.+++.+.|+.+++.|+.+-+- +|-. .+.+++++.++.-.+.+ .+.|-
T Consensus 99 ~~IEiSdGti---------~l~~~~r~~~I~~~~~~Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAG--A~~Vi 165 (244)
T PF02679_consen 99 DAIEISDGTI---------DLPEEERLRLIRKAKEEGFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAG--ADKVI 165 (244)
T ss_dssp SEEEE--SSS------------HHHHHHHHHHHCCTTSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHT--ECEEE
T ss_pred CEEEecCCce---------eCCHHHHHHHHHHHHHCCCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCC--CCEEE
Confidence 9998866552 236778889999999999987654 3331 23556777776666666 55544
Q ss_pred c
Q psy14485 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 166 i 166 (244)
T PF02679_consen 166 I 166 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.7 Score=33.90 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-------ecCCCCH-HHHHHHHHhCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-------TLGMLNE-NQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-------~~g~l~~-e~l~~Lk~aG~ 169 (348)
+..+...+......|++.|-++=.+........+.+..+.+.++.. +..+-. ..+.+++ +..+..+++|+
T Consensus 66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 66 PGTASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF 145 (235)
T ss_pred chHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC
Confidence 4555555555556799988764322111222344455555666653 222221 2344544 56678899999
Q ss_pred CeeeccCCC-C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 170 DYYNHNLDT-S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et-~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+.+-+ +| . ..+++. .+.++.-+.++.+|++|+.+ |+ |.= ..+++..|..++ |+.++|-
T Consensus 146 ~gvMl--DTa~Kdg~~L~d~----~~~~~L~~Fv~~ar~~gL~~------aLAGSL---~~~di~~L~~l~--pD~lGfR 208 (235)
T PF04476_consen 146 DGVML--DTADKDGGSLFDH----LSEEELAEFVAQARAHGLMC------ALAGSL---RFEDIPRLKRLG--PDILGFR 208 (235)
T ss_pred CEEEE--ecccCCCCchhhc----CCHHHHHHHHHHHHHccchh------hccccC---ChhHHHHHHhcC--CCEEEec
Confidence 98765 55 2 234443 37888899999999998754 44 321 245667788898 9999886
Q ss_pred ccccc
Q psy14485 245 NLVQI 249 (348)
Q Consensus 245 ~l~P~ 249 (348)
.-.-.
T Consensus 209 GAvC~ 213 (235)
T PF04476_consen 209 GAVCG 213 (235)
T ss_pred hhhCC
Confidence 65533
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.75 E-value=18 Score=34.55 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe
Q psy14485 130 RDLDNIENMICEVKKIGLETCLTLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
.+.+.+.++++.+++.++.+.+..+. -..+.++.+.++|++.+.+..-|.+..|. +...++.+ ..+..++.+++
T Consensus 115 ~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~---i~~~ik~~~ip 189 (368)
T PRK08649 115 IKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLN---LKEFIYELDVP 189 (368)
T ss_pred CCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHH---HHHHHHHCCCC
Confidence 35678888999998866555444433 34688999999999999875544222221 11113444 45555556766
Q ss_pred eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC----CC-CCCCCCCHHHHHHHHHHHHHHCC-----C
Q psy14485 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT----PL-YGSSILDPLEFIRTIAVARITMP-----T 278 (348)
Q Consensus 209 i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT----~l-~~~~~~~~~~~~~~~a~~R~~lp-----~ 278 (348)
+ |.|---|.++..+.+ +.+ .+.|-+. .- +|+ +. .....|......+..+.++.++. +
T Consensus 190 V----IaG~V~t~e~A~~l~----~aG--AD~V~VG-~G--~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~ 256 (368)
T PRK08649 190 V----IVGGCVTYTTALHLM----RTG--AAGVLVG-IG--PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRY 256 (368)
T ss_pred E----EEeCCCCHHHHHHHH----HcC--CCEEEEC-CC--CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCC
Confidence 5 334445666554443 466 7777543 22 332 11 11122322333444444444432 2
Q ss_pred CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 279 SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 279 ~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..|-+.+|-.+ ...-..++.+||+.++.|..+.
T Consensus 257 vpVIAdGGI~~--~~diakAlalGAd~Vm~Gs~fa 289 (368)
T PRK08649 257 VHVIADGGIGT--SGDIAKAIACGADAVMLGSPLA 289 (368)
T ss_pred CeEEEeCCCCC--HHHHHHHHHcCCCeecccchhc
Confidence 22333444222 2334558899999998886553
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=15 Score=32.95 Aligned_cols=205 Identities=17% Similarity=0.176 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCc---ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR---ELKD---RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~~~---~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
=+.+.+.+.++..++.|+.- +..|.+. +|+. ...+.+..+.+.-++.|+.+.. ...+.+.++.+.+ .++.
T Consensus 26 Es~e~~~~~a~~~~~~g~~~-~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNY-FRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD-YLDV 101 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh-cCCE
Confidence 35788888898888888754 4544421 1111 2345555555555557888864 4578888999988 5998
Q ss_pred eeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 172 YNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 172 i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+.++--. .+ .+.++.+.+.|.+|.. =-|..-|.+++...++.+.+-+ ...+.+. +.
T Consensus 102 lqIgs~~~~n---------------~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G--n~~i~L~----eR 158 (250)
T PRK13397 102 IQVGARNMQN---------------FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG--KSNIILC----ER 158 (250)
T ss_pred EEECcccccC---------------HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC--CCeEEEE----cc
Confidence 8875422 10 2334444455655421 1233468899999999988776 3332221 22
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceecc--ccccccchhhHHHHHHhCcceeeeCCeecc----CCCCC---c
Q psy14485 251 GTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKLLT----TDNTK---T 320 (348)
Q Consensus 251 gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~----~~g~~---~ 320 (348)
||.-|..+ ....-.++.+...|..+.-. .+-.| .|...+-......|+.+||++++.+....+ .+|+. .
T Consensus 159 g~~~Y~~~-~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~ 237 (250)
T PRK13397 159 GVRGYDVE-TRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDY 237 (250)
T ss_pred ccCCCCCc-cccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCH
Confidence 44222111 00012233334444322111 11122 222112236778899999999987654321 23332 2
Q ss_pred hHHHHHHHHc
Q psy14485 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++..++++++
T Consensus 238 ~~l~~l~~~~ 247 (250)
T PRK13397 238 KQLEQLGQEL 247 (250)
T ss_pred HHHHHHHHHh
Confidence 4666666654
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.48 E-value=5.3 Score=37.30 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CH-
Q psy14485 106 AAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SP- 180 (348)
Q Consensus 106 ~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~- 180 (348)
.++.+.+. +++.|++... + -.-+...+.++.+++......+-.| ..+.|..+.|.++|+|.+-+|+.. +-
T Consensus 111 r~~~L~~a~~~~d~iviD~A--h---Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSic 185 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVA--N---GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVC 185 (343)
T ss_pred HHHHHHhcCCCCCEEEEECC--C---CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcc
Confidence 34445554 4777877554 1 1236889999999985333444456 899999999999999999887665 32
Q ss_pred --HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy14485 181 --KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 181 --e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
+....+.. -......++.+.+++.|.++.++- | -.+.-|++..+
T Consensus 186 ttR~~~Gvg~-pqltAv~~~a~aa~~~~v~VIaDG--G-Ir~~gDI~KAL 231 (343)
T TIGR01305 186 TTRTKTGVGY-PQLSAVIECADAAHGLKGHIISDG--G-CTCPGDVAKAF 231 (343)
T ss_pred cCceeCCCCc-CHHHHHHHHHHHhccCCCeEEEcC--C-cCchhHHHHHH
Confidence 22222221 256677777777777777665441 1 13345555554
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.36 E-value=12 Score=34.35 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHH-HhC
Q psy14485 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLK-KVG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk-~aG 168 (348)
+..+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....|. .++|..+.+. +-|
T Consensus 90 i~~Ai~~GftSVM~DgS-~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 90 IAQKVRSGVRSVMIDGS-HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred HHHHHHcCCCEEEeCCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC
Confidence 44556779999988776 2333345556666666667677776653221 2445555555 569
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .+..+++ +++.|+.. .++++ ++-|- |-..+++ ..+.+.+ +.-|.++
T Consensus 169 vD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~--~~vPL---VLHGgSG~~~e~~----~~ai~~G--i~KiNi~ 232 (284)
T PRK09195 169 IDSLAVAIGTAHGMYKG-EPKLDFD-RLENIRQW--VNIPL---VLHGASGLPTKDI----QQTIKLG--ICKVNVA 232 (284)
T ss_pred cCEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCe---EEecCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 99999999986556653 3344555 33333332 35554 34455 5555554 4445666 5555544
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.3 Score=37.72 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHhcC--cEEEEecCCCC------H-HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHH
Q psy14485 131 DLDNIENMICEVKKIG--LETCLTLGMLN------E-NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKN 201 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~--~~i~~~~g~l~------~-e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~ 201 (348)
+...+.++++..++.+ ++++++.|... . ...+.+ ..|.+||.+|+... +--+.++.
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~RIGHG~~~~--------------~dp~ll~~ 241 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTKRIGHGFALP--------------KHPLLMDL 241 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCCcCccccccC--------------cCHHHHHH
Confidence 4567778888888777 88888777543 2 334444 57888888887552 01244566
Q ss_pred HHHcCC--eee--EeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 202 VRNVGI--NIC--CGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 202 ~~~~G~--~i~--~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
+++.++ .+| ++++.|.-.+.++ .-+..+.+-+
T Consensus 242 l~~~~I~lEvCPtSN~~~~~v~~~~~--HPl~~ll~~G 277 (345)
T cd01321 242 VKKKNIAIEVCPISNQVLGLVSDLRN--HPAAALLARG 277 (345)
T ss_pred HHHcCCeEEECcchhhhhccccchhh--ChHHHHHHCC
Confidence 777665 444 4566665222221 2255555555
|
|
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=89.10 E-value=3.4 Score=33.52 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EE-EecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TC-LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~-~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++|+++.+ .+..+.-|.+++- +..-...+.++++.+++.|.. +. +-.|.++++.+..|+++|++++..
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~- 121 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFG- 121 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeC-
Confidence 5788888765 4445666655442 112346778888888887654 33 456789999999999999999863
Q ss_pred CCC
Q psy14485 176 LDT 178 (348)
Q Consensus 176 ~et 178 (348)
..|
T Consensus 122 pgt 124 (143)
T COG2185 122 PGT 124 (143)
T ss_pred CCC
Confidence 344
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=16 Score=32.57 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc------HHHHH-----HHHHHHHhc-CcEEE----EecCCCCHH-HH
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRD------LDNIE-----NMICEVKKI-GLETC----LTLGMLNEN-QA 161 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~------~~~~~-----~l~~~i~~~-~~~i~----~~~g~l~~e-~l 161 (348)
++++..+.++.+.+. +.-+-|+=...+|.... ..... ++++.+++. .+++. +|+...+.+ .+
T Consensus 16 ~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 16 NVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred CHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHH
Confidence 567777777766655 76665543322331111 11222 577777753 44443 244333444 48
Q ss_pred HHHHHhCCCeeecc---CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy14485 162 YRLKKVGLDYYNHN---LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g---~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.++++|++.+.+- +| ..++..+.++.++++|+... +.+....+.+.+...+ +..
T Consensus 95 ~~~~~~Gadgvii~dlp~e-------------~~~~~~~~~~~~~~~Gl~~~--~~v~p~T~~e~l~~~~----~~~--- 152 (244)
T PRK13125 95 NMARDVGADGVLFPDLLID-------------YPDDLEKYVEIIKNKGLKPV--FFTSPKFPDLLIHRLS----KLS--- 152 (244)
T ss_pred HHHHHcCCCEEEECCCCCC-------------cHHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHH----HhC---
Confidence 89999999999863 22 23456678899999999763 2333333344333332 232
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+.+-++.. .|||- .. -.....+.+...|...++..|.+..|-.+ ++.....+.+|||.++.|..+
T Consensus 153 ~~~l~msv--~~~~g-~~----~~~~~~~~i~~lr~~~~~~~i~v~gGI~~--~e~i~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 153 PLFIYYGL--RPATG-VP----LPVSVERNIKRVRNLVGNKYLVVGFGLDS--PEDARDALSAGADGVVVGTAF 217 (244)
T ss_pred CCEEEEEe--CCCCC-CC----chHHHHHHHHHHHHhcCCCCEEEeCCcCC--HHHHHHHHHcCCCEEEECHHH
Confidence 22222233 34441 11 13345667777777776544544443222 344445578999999888654
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=15 Score=32.10 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=95.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++.++.++.+.+.|++.+-++- .++ .-.+.++.+++....+.+-.| .++.+.++...++|.+.+-
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEitl--~~~------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv- 92 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEVTL--RTP------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV- 92 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEEec--CCc------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE-
Confidence 346789999999999999999887652 222 244556666653334444445 5788999999999998654
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.. +.+. +.++.+++.|+..-.+. -|+.++ ..+.+++ .+.+.+++ ...+
T Consensus 93 sP------------~~~~----~vi~~a~~~~i~~iPG~-----~TptEi----~~a~~~G--a~~vKlFP-----a~~~ 140 (212)
T PRK05718 93 SP------------GLTP----PLLKAAQEGPIPLIPGV-----STPSEL----MLGMELG--LRTFKFFP-----AEAS 140 (212)
T ss_pred CC------------CCCH----HHHHHHHHcCCCEeCCC-----CCHHHH----HHHHHCC--CCEEEEcc-----chhc
Confidence 11 1122 45667777777654442 366553 4456677 67776632 2211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
. . ...+...+-.+|+..+-.++|- + .+.-...+.+|+..+..|.
T Consensus 141 g-----g----~~~lk~l~~p~p~~~~~ptGGV-~--~~ni~~~l~ag~v~~vggs 184 (212)
T PRK05718 141 G-----G----VKMLKALAGPFPDVRFCPTGGI-S--PANYRDYLALPNVLCIGGS 184 (212)
T ss_pred c-----C----HHHHHHHhccCCCCeEEEeCCC-C--HHHHHHHHhCCCEEEEECh
Confidence 1 1 1344455556787555444442 1 2333445778854444444
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=13 Score=33.99 Aligned_cols=122 Identities=12% Similarity=0.214 Sum_probs=73.4
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC---------------CCCHHHHHHHH-HhCCCee
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG---------------MLNENQAYRLK-KVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g---------------~l~~e~l~~Lk-~aG~~~i 172 (348)
.+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....| ..++|....+. +-|+|.+
T Consensus 95 ~ai~~GftSVM~DgS-~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 95 EAIDAGFTSVMIDAS-HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 173 (285)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE
Confidence 456779999988876 233344556666777777777777765322 13456655555 5799999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. .+..+++ +++.|+. ..++++. +-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 174 AvaiGt~HG~Y~~-~p~L~~~-~L~~I~~--~~~iPLV---LHGgSG~~~e~~----~~ai~~G--i~KiNi~ 233 (285)
T PRK07709 174 APALGSVHGPYKG-EPNLGFA-EMEQVRD--FTGVPLV---LHGGTGIPTADI----EKAISLG--TSKINVN 233 (285)
T ss_pred EEeecccccCcCC-CCccCHH-HHHHHHH--HHCCCEE---EeCCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 9999886566652 2344664 3333433 2366653 4455 5555554 4445566 5555544
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.86 E-value=6.8 Score=34.03 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=74.8
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++|+.+..++.+.+.|++.|-+.-- +| .-.+.++.+++...++.+-.| .++.++++...++|.+-+ +
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~--sp------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi-V 90 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLR--TP------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI-V 90 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecC--CC------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998866422 22 234566666654335555566 689999999999998754 2
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+...++ +.++.+++.|+.+..+.+ |+-++.. +.+++ .+.+.|++
T Consensus 91 sP~~~~----------------ev~~~a~~~~ip~~PG~~-----TptEi~~----Ale~G--~~~lK~FP 134 (211)
T COG0800 91 SPGLNP----------------EVAKAANRYGIPYIPGVA-----TPTEIMA----ALELG--ASALKFFP 134 (211)
T ss_pred CCCCCH----------------HHHHHHHhCCCcccCCCC-----CHHHHHH----HHHcC--hhheeecC
Confidence 222222 347788889998877754 5655544 44555 45544443
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=88.78 E-value=12 Score=34.75 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=80.5
Q ss_pred CcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy14485 146 GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 146 ~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
+.++.+....-+++ .++.+.++|+|.|.+++.. .+..-+.-.. ....+...+.++.+++ .++++.+-+-.|
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 34455555444443 3456667888888887765 2222221111 1255667777777766 477776665556
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHH
Q psy14485 217 LSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQA 296 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~ 296 (348)
..++..+..+.+..+.+.+ ++.+.++.-.+. .....+. .+..+...+...+ ..+-..+|-.+ .+...
T Consensus 142 ~~~~~~~~~~~a~~l~~~G--~d~i~vh~r~~~-----~~~~~~~---~~~~i~~i~~~~~-ipvi~nGgI~~--~~da~ 208 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAG--AQAVTLHGRTRA-----QGYSGEA---NWDIIARVKQAVR-IPVIGNGDIFS--PEDAK 208 (319)
T ss_pred cCCCcchHHHHHHHHHHhC--CCEEEEEccccc-----ccCCCch---hHHHHHHHHHcCC-CcEEEeCCCCC--HHHHH
Confidence 6444445667777778887 788877543221 1111111 2344444444433 22222332222 23344
Q ss_pred HHH-HhCcceeeeC
Q psy14485 297 FCF-LAGANSIFYG 309 (348)
Q Consensus 297 ~~l-~~GAn~~~~~ 309 (348)
.++ ..||+.++.|
T Consensus 209 ~~l~~~gad~Vmig 222 (319)
T TIGR00737 209 AMLETTGCDGVMIG 222 (319)
T ss_pred HHHHhhCCCEEEEC
Confidence 455 5799999776
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=88.76 E-value=1.1 Score=39.69 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=100.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
-+|.+ .++.+.+.|++++++.+-+.. ......-.++++.+.+ .++++.+-.|..+.+.++.+.++|++++.+|-
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa--~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAA--KEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHH--CCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCc--ccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 45544 445566789999999864211 1123445577777765 48999999999999999999999999999876
Q ss_pred CC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee----c-CC---CHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 177 DT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG----L-SE---SRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 177 et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G----l-ge---t~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
++ +++.++ +..+..-..-+-++.++--| . |- +.-+..+.++.+.+++ ...+-+..
T Consensus 104 ~~~~~~~~l~------------~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~td- 168 (229)
T PF00977_consen 104 EALEDPELLE------------ELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG--AGEIILTD- 168 (229)
T ss_dssp HHHHCCHHHH------------HHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT---SEEEEEE-
T ss_pred HHhhchhHHH------------HHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC--CcEEEEee-
Confidence 54 233333 22222222223344554444 1 21 2245677777888887 66764433
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+-..||-- .++. .++...+... +..+-+++|-.++ .+... ....|++.++.|.
T Consensus 169 i~~dGt~~----G~d~----~~~~~l~~~~-~~~viasGGv~~~-~Dl~~-l~~~G~~gvivg~ 221 (229)
T PF00977_consen 169 IDRDGTMQ----GPDL----ELLKQLAEAV-NIPVIASGGVRSL-EDLRE-LKKAGIDGVIVGS 221 (229)
T ss_dssp TTTTTTSS----S--H----HHHHHHHHHH-SSEEEEESS--SH-HHHHH-HHHTTECEEEESH
T ss_pred ccccCCcC----CCCH----HHHHHHHHHc-CCCEEEecCCCCH-HHHHH-HHHCCCcEEEEeh
Confidence 44566642 2332 2232222222 4345555554332 23333 3488998887653
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=15 Score=31.74 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=100.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..+.++....++.+.+.|++.+-++-. +| .-.+.++.+++....+.+-.| .++.+.++...++|.+.+-
T Consensus 11 r~~~~~~a~~ia~al~~gGi~~iEit~~--tp------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv- 81 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLPAIEITLR--TP------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV- 81 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--Cc------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 3467899999999999999998866432 22 234555556543334555555 6789999999999998543
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+-.+.+ |+.|+... .+++ .+.+.++| .+.+
T Consensus 82 SP~~~~----------------~vi~~a~~~~i~~iPG~~-----TptEi~~A----~~~G--a~~vK~FP-----a~~~ 129 (201)
T PRK06015 82 SPGTTQ----------------ELLAAANDSDVPLLPGAA-----TPSEVMAL----REEG--YTVLKFFP-----AEQA 129 (201)
T ss_pred CCCCCH----------------HHHHHHHHcCCCEeCCCC-----CHHHHHHH----HHCC--CCEEEECC-----chhh
Confidence 222222 346778899988766644 67766544 4566 66766654 2221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. .+.+...+-.+|+..+-.++|- + .+.-...|.+|+.....|..+
T Consensus 130 GG---------~~yikal~~plp~~~l~ptGGV-~--~~n~~~~l~ag~~~~~ggs~l 175 (201)
T PRK06015 130 GG---------AAFLKALSSPLAGTFFCPTGGI-S--LKNARDYLSLPNVVCVGGSWV 175 (201)
T ss_pred CC---------HHHHHHHHhhCCCCcEEecCCC-C--HHHHHHHHhCCCeEEEEchhh
Confidence 10 1344555667887554444432 1 222334577877766555544
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.53 E-value=9.1 Score=36.50 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE------ecC-CC--CHHHHHHH
Q psy14485 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL------TLG-ML--NENQAYRL 164 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~------~~g-~l--~~e~l~~L 164 (348)
.|+..+-+-|..-++...+.|++.|.+-+.- -+...+...++.+++.|.++.. +|- ++ -.+.++.|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAl-----ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel 165 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDAL-----NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKEL 165 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechhc-----cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHH
Confidence 4554444444555777888999999886652 1456778888888887665432 221 11 12678889
Q ss_pred HHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCe
Q psy14485 165 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGIN 208 (348)
Q Consensus 165 k~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~ 208 (348)
.+.|+|+|.+- .+..-.++....+.++.+++ .+++
T Consensus 166 ~~~g~DSIciK---------DmaGlltP~~ayelVk~iK~~~~~p 201 (472)
T COG5016 166 LEMGVDSICIK---------DMAGLLTPYEAYELVKAIKKELPVP 201 (472)
T ss_pred HHcCCCEEEee---------cccccCChHHHHHHHHHHHHhcCCe
Confidence 99999999862 22222355555556666655 3443
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=28 Score=34.54 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEEec--C-CCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLTL--G-MLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~--g-~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+++.++.+.+.|+..|+|.+-. ....+..+.++++.+++. ++++.++. . -+.-...-.-.++|++.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDta---Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMA---ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCc---cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 478888999999999999999996641 124567888888888863 35554432 1 23333344456789998
Q ss_pred eeccCCCCHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHh----cCCCCCeeecccc
Q psy14485 172 YNHNLDTSPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN----LNPYPESVPINNL 246 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~----l~~~~~~i~~~~l 246 (348)
+...+..- .-++++ ..++.+.++ +..|+.+..++ +...++.+.+..++. +......+....+
T Consensus 229 vDtai~Gl-----g~~aGn~atE~vv~~L---~~~g~~tgiDl-----~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~ 295 (499)
T PRK12330 229 VDTAISSM-----SLGPGHNPTESLVEML---EGTGYTTKLDM-----DRLLKIRDHFKKVRPKYKEFESKTTGVETEIF 295 (499)
T ss_pred EEeecccc-----cccccchhHHHHHHHH---HhcCCCCCCCH-----HHHHHHHHHHHHHHHHHhcccccccCCCCccc
Confidence 87655431 111222 445554444 44566543331 111222223333322 2111122333444
Q ss_pred cc-cCCCCCCCC-------CCCC-HHHHHHHHHHHHHHCCCC
Q psy14485 247 VQ-IKGTPLYGS-------SILD-PLEFIRTIAVARITMPTS 279 (348)
Q Consensus 247 ~P-~~gT~l~~~-------~~~~-~~~~~~~~a~~R~~lp~~ 279 (348)
.+ .||--+.+. ...+ .+++++.+...|..+...
T Consensus 296 ~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~ 337 (499)
T PRK12330 296 KSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYP 337 (499)
T ss_pred cCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCC
Confidence 44 677666542 1122 357788888899887664
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=88.35 E-value=3.9 Score=35.38 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|++.|-.++|.. +...+++.+..+.+.++ ..+.+-++.|.-+.+.+..|.++|.+|+.
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFG-PGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 4567777777777778888777665532 23345555555545444 34666677777788888888888887764
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=88.30 E-value=10 Score=32.73 Aligned_cols=163 Identities=17% Similarity=0.086 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..+.++....++.+.+.|++.+-++-- ++ ...+.++.+++....+.+-.| .++.+.++...++|.+.+- +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~--t~------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-S 86 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLR--TP------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-S 86 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETT--ST------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-E
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecC--Cc------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-C
Confidence 457889999999999999998877543 22 234555555553233444455 6789999999999998653 2
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
. . --.+.++.++++|+.+..+.+ |+.|+... .+++ .+.+.++|- ..+.
T Consensus 87 P------------~----~~~~v~~~~~~~~i~~iPG~~-----TptEi~~A----~~~G--~~~vK~FPA-----~~~G 134 (196)
T PF01081_consen 87 P------------G----FDPEVIEYAREYGIPYIPGVM-----TPTEIMQA----LEAG--ADIVKLFPA-----GALG 134 (196)
T ss_dssp S------------S------HHHHHHHHHHTSEEEEEES-----SHHHHHHH----HHTT---SEEEETTT-----TTTT
T ss_pred C------------C----CCHHHHHHHHHcCCcccCCcC-----CHHHHHHH----HHCC--CCEEEEecc-----hhcC
Confidence 2 1 122457788999998877755 77776554 4566 666665543 2221
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. +.+...+-.+|+..+-.++|- + .+.-...+.+|+..+..|..+
T Consensus 135 ------G~---~~ik~l~~p~p~~~~~ptGGV-~--~~N~~~~l~ag~~~vg~Gs~L 179 (196)
T PF01081_consen 135 ------GP---SYIKALRGPFPDLPFMPTGGV-N--PDNLAEYLKAGAVAVGGGSWL 179 (196)
T ss_dssp ------HH---HHHHHHHTTTTT-EEEEBSS-----TTTHHHHHTSTTBSEEEESGG
T ss_pred ------cH---HHHHHHhccCCCCeEEEcCCC-C--HHHHHHHHhCCCEEEEECchh
Confidence 11 334445556777544334432 2 222344678999888766644
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=19 Score=32.42 Aligned_cols=181 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.++.+.+.|++++++..-..... ....-.++++.+.+ .++++.+..|.-+.+.++.+.++|++++-+|-..
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~---- 106 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKR--GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAA---- 106 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcC--CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHH----
Confidence 4445567788999998876421111 11122445555544 4678888889999999999999999999887432
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee-----------c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-----------L-SESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G-----------l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
++ +.+.+.+..+...+.-+.++.++--| - ..+..+..+.+..+.+++ +..+.+.... ..
T Consensus 107 ~~------~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g--~~~ii~~~i~-~~ 177 (258)
T PRK01033 107 LE------DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALG--AGEILLNSID-RD 177 (258)
T ss_pred hc------CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcC--CCEEEEEccC-CC
Confidence 21 12223333333321124445554333 1 123334566667777777 6776655432 23
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHH-HhCcceeeeCC
Q psy14485 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCF-LAGANSIFYGD 310 (348)
Q Consensus 251 gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l-~~GAn~~~~~~ 310 (348)
||- ..++.+ .+..++.. .+..+-+++|-.+. .+.. .++ ..|++.++.|.
T Consensus 178 G~~----~G~d~~----~i~~~~~~-~~ipvIasGGv~s~-eD~~-~l~~~~GvdgVivg~ 227 (258)
T PRK01033 178 GTM----KGYDLE----LLKSFRNA-LKIPLIALGGAGSL-DDIV-EAILNLGADAAAAGS 227 (258)
T ss_pred CCc----CCCCHH----HHHHHHhh-CCCCEEEeCCCCCH-HHHH-HHHHHCCCCEEEEcc
Confidence 432 122322 22222322 23334455543332 2333 345 68999997664
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.25 E-value=11 Score=34.60 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC---------------CHHHHHH-HHHhCCCee
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML---------------NENQAYR-LKKVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l---------------~~e~l~~-Lk~aG~~~i 172 (348)
.+.+.|+++|-+.|+ ..|...+.+...++++..+..|+.+...+|.+ +++.+.. ..+-|+|.+
T Consensus 92 ~Ai~~GftSVM~DgS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L 170 (283)
T PRK07998 92 QAVRAGFTSVMIDGA-ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDML 170 (283)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCee
Confidence 445779999988765 22322455666677777777787776543322 4445444 456799999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. ++.+++ +++.|+.. .++++. +-|- |-..+++ +.+.+.+ +.-|.+.
T Consensus 171 AvaiGt~HG~Y~~--p~l~~~-~l~~I~~~--~~vPLV---lHGgSG~~~e~~----~~ai~~G--i~KiNi~ 229 (283)
T PRK07998 171 AVSIGNVHGLEDI--PRIDIP-LLKRIAEV--SPVPLV---IHGGSGIPPEIL----RSFVNYK--VAKVNIA 229 (283)
T ss_pred ehhccccccCCCC--CCcCHH-HHHHHHhh--CCCCEE---EeCCCCCCHHHH----HHHHHcC--CcEEEEC
Confidence 9999885556653 444453 33333322 244443 3455 5555555 4445566 5555544
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=8.7 Score=36.51 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCC----C-HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCC
Q psy14485 133 DNIENMICEVKKIGLETCLTLGML----N-ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 207 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~~~g~l----~-~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~ 207 (348)
..+.++++..++.|+.++++.|.. + .+..+.+...|.+||.+|+... +-.+.++.+++.|+
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~--------------~d~~l~~~l~~~~I 271 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA--------------ESQELIDMVKEKDI 271 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC--------------CCHHHHHHHHHcCC
Confidence 446666666776677777766642 1 2345556666777777776541 11234666777665
Q ss_pred --eee--EeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 208 --NIC--CGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 208 --~i~--~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+| +++..|.-.+.++ .-+..+.+.+
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~--HPi~~l~~~G 301 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDT--HPIRKLYDAG 301 (362)
T ss_pred eEEECCcchhhhhcCCchhh--HHHHHHHHCC
Confidence 444 5666665333322 2355555555
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.6 Score=38.55 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEec---------cCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~g---------g~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+|+++.+...+ ...++|+- ||.+. ....+.+.++++.+++.|+.+++-.. -+.+.++.-++.|++
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv-~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~Gad 147 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDV-AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELGAD 147 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T-CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT-S
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChh-hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcCCC
Confidence 467777665554 46777762 11122 23578999999999999988876543 457899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCC--HHHHHHHHHHHHHcCCeeeEeEeeec-CCCHH
Q psy14485 171 YYNHNLDTSPKLYGDIISTRD--YENRLNTLKNVRNVGINICCGGIIGL-SESRD 222 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~--~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e 222 (348)
+|.+.-+.-.+.+..-..... ++...++.+.+++.|+.++++ -|| .++..
T Consensus 148 ~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAG--HgL~y~N~~ 200 (239)
T PF03740_consen 148 RVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNAG--HGLNYDNVR 200 (239)
T ss_dssp EEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE--TT--TTTHH
T ss_pred EEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecC--CCCCHHHHH
Confidence 998744321122211000011 466778888889999998876 444 44443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=13 Score=32.69 Aligned_cols=169 Identities=17% Similarity=0.096 Sum_probs=101.8
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..+.++....++.+.+.|++.+-++-- +| ...+.+.++.+..++....+.+-.| .++.+.++...++|.+.+ +
T Consensus 22 r~~~~~~a~~~~~al~~gGi~~iEiT~~--tp--~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-V 96 (222)
T PRK07114 22 YHADVEVAKKVIKACYDGGARVFEFTNR--GD--FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-V 96 (222)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--CC--cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998766432 22 2345555555555544345655555 678999999999998754 2
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+-.+.+ |+.|+... .+++ .+.+.++|-. .+
T Consensus 97 sP~~~~----------------~v~~~~~~~~i~~iPG~~-----TpsEi~~A----~~~G--a~~vKlFPA~-----~~ 144 (222)
T PRK07114 97 TPLFNP----------------DIAKVCNRRKVPYSPGCG-----SLSEIGYA----EELG--CEIVKLFPGS-----VY 144 (222)
T ss_pred CCCCCH----------------HHHHHHHHcCCCEeCCCC-----CHHHHHHH----HHCC--CCEEEECccc-----cc
Confidence 322222 346778888988766644 67666544 4566 6666665521 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. ...+...+-.+|+..+-.++|- +...+.-...+.+||..+-.|..+
T Consensus 145 ------G----~~~ikal~~p~p~i~~~ptGGV-~~~~~n~~~yl~aGa~avg~Gs~L 191 (222)
T PRK07114 145 ------G----PGFVKAIKGPMPWTKIMPTGGV-EPTEENLKKWFGAGVTCVGMGSKL 191 (222)
T ss_pred ------C----HHHHHHHhccCCCCeEEeCCCC-CcchhcHHHHHhCCCEEEEEChhh
Confidence 0 1234445555777544444432 221012233467999888656654
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.79 E-value=5.4 Score=37.54 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=56.3
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCC--CcccHHHHHHHHHHHHhcCcEEEEecC--CCCHHHHHHHHHhCCCe
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWREL--KDRDLDNIENMICEVKKIGLETCLTLG--MLNENQAYRLKKVGLDY 171 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--~~~~~~~~~~l~~~i~~~~~~i~~~~g--~l~~e~l~~Lk~aG~~~ 171 (348)
+.++++.+.++++......-+.+ +|.+-.+ ...+.+.+.++.+..++.++.++.+.| .-++-....+...|++|
T Consensus 148 r~~~~e~~~~~~~~a~~~~~~~~--~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~r 225 (345)
T COG1816 148 RHLGFESADEELELALRYRDKLV--TGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAER 225 (345)
T ss_pred eecCHHHHHHHHHHHhhcccccC--ccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhh
Confidence 45677888777776654322222 1221111 235678899999999999999999988 34456677888889999
Q ss_pred eeccCCC
Q psy14485 172 YNHNLDT 178 (348)
Q Consensus 172 i~~g~et 178 (348)
|.+|+..
T Consensus 226 I~HGi~~ 232 (345)
T COG1816 226 IGHGIRA 232 (345)
T ss_pred hcccccc
Confidence 9999977
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.76 E-value=19 Score=33.01 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=72.0
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHHHH-HhCCCee
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYRLK-KVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~Lk-~aG~~~i 172 (348)
.+.+.|+++|-+-|+ .-|...+.....++++..+..++.+....|. .++|..+.+. +-|+|.+
T Consensus 95 ~ai~~GftSVM~DgS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~L 173 (286)
T PRK08610 95 EAIDAGFTSVMIDAS-HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL 173 (286)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEE
Confidence 456779999988876 2333345556666677777777777654321 2456665555 5699999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. .|.-+++ +++.|+.. .++++. +-|- |-..+++ ..+.+.+ +.-|.++
T Consensus 174 AvaiGt~HG~Y~~-~p~Ld~~-~L~~I~~~--~~vPLV---LHGgSG~~~e~~----~~ai~~G--I~KiNi~ 233 (286)
T PRK08610 174 APALGSVHGPYKG-EPKLGFK-EMEEIGLS--TGLPLV---LHGGTGIPTKDI----QKAIPFG--TAKINVN 233 (286)
T ss_pred EeeccccccccCC-CCCCCHH-HHHHHHHH--HCCCEE---EeCCCCCCHHHH----HHHHHCC--CeEEEec
Confidence 9999886566652 2334555 33334332 366553 4455 5555554 4445566 5555544
|
|
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.50 E-value=24 Score=32.83 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHHHHhcCcEEEE--ecCC-----CCHHHHHHHHHhCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEVKKIGLETCL--TLGM-----LNENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~i~~~~~~i~~--~~g~-----l~~e~l~~Lk~aG~ 169 (348)
.++-.+.++.+.+.|++.|+.+=. .|.. .-...+.++++..++.++.+.+ +|.. .+...+..+++.|+
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~--~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLL--IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecc--cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 467777888889999999866443 1211 2356788888888888887665 5543 35578999999999
Q ss_pred CeeeccCCC
Q psy14485 170 DYYNHNLDT 178 (348)
Q Consensus 170 ~~i~~g~et 178 (348)
+.+-+....
T Consensus 93 ~glRlD~gf 101 (360)
T COG3589 93 DGLRLDYGF 101 (360)
T ss_pred hheeecccC
Confidence 988875544
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=87.50 E-value=20 Score=31.89 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--cc--------------HHHHHHHHHHHHhc-CcEEEE----ecCCC-
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD--RD--------------LDNIENMICEVKKI-GLETCL----TLGML- 156 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~--------------~~~~~~l~~~i~~~-~~~i~~----~~g~l- 156 (348)
+.+...+.++.+.+.|+..+.++=-..+|.- .. .+...++++.+++. .+++.+ |+-.-
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 5678888888898999999988621111110 01 12567778888763 444443 22111
Q ss_pred -CHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 157 -NENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 157 -~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+..++.++++|++.+.+.= -.+++..+.++.++++|+....- +. -.|..++++.+ .+..
T Consensus 92 G~~~fi~~~~~aG~~giiipD-------------l~~ee~~~~~~~~~~~g~~~i~~--i~-P~T~~~~i~~i---~~~~ 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD-------------LPPEEAEEFREAAKEYGLDLIFL--VA-PTTPDERIKKI---AELA 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC-------------CCHHHHHHHHHHHHHcCCcEEEE--eC-CCCCHHHHHHH---HhhC
Confidence 15679999999999887521 12457778899999999875322 22 34444443333 3322
Q ss_pred CCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy14485 236 PYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
.+.+-+.... |+|.-...-. ....+.+...|.. .+..|.+..|-.+ ++.......+ ||.++.|..
T Consensus 153 --~~~vy~~s~~--g~tG~~~~~~---~~~~~~i~~lr~~-~~~pI~vggGI~~--~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 153 --SGFIYYVSRT--GVTGARTELP---DDLKELIKRIRKY-TDLPIAVGFGIST--PEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred --CCCEEEEeCC--CCCCCccCCC---hhHHHHHHHHHhc-CCCcEEEEccCCC--HHHHHHHHcc-CCEEEECHH
Confidence 3455444444 3343221111 2345555666654 3434444332211 3233445667 999988753
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.6 Score=35.89 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|++.|-.++|. .+...+.+.+..+.+.+.. .+.+-++.|..+.+.+..|.++|.+|+.
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf-~~~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGF-GAGGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCC-CCCCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 444555555555555566655554442 1222333443333333332 3455555666666666666666666553
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.31 E-value=16 Score=33.46 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-----------------CCCHHHHHHHH-HhCC
Q psy14485 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-----------------MLNENQAYRLK-KVGL 169 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-----------------~l~~e~l~~Lk-~aG~ 169 (348)
..+.+.|+++|-+-|+ ..|...+.....++++..+..++.+....| ..+++..+.+. +-|+
T Consensus 91 ~~ai~~GFtSVM~DgS-~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~Tgv 169 (286)
T PRK12738 91 RRKVHAGVRSAMIDGS-HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGV 169 (286)
T ss_pred HHHHHcCCCeEeecCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCC
Confidence 3455779999988776 233344555666677777766776664322 12455666555 4699
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+. .|..+++ +++.|+.. .++++ ++-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 170 D~LAvaiGt~HG~Y~~-~p~Ldfd-~l~~I~~~--~~vPL---VLHGgSG~~~e~~----~kai~~G--I~KiNi~ 232 (286)
T PRK12738 170 DSLAVAIGTAHGLYSK-TPKIDFQ-RLAEIREV--VDVPL---VLHGASDVPDEFV----RRTIELG--VTKVNVA 232 (286)
T ss_pred CEEEeccCcccCCCCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 9999999986555552 2334544 33333322 35554 34455 5555554 4445666 5555543
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=5.7 Score=34.95 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.+++.+.++.+.+.|++.|--++|. .+.....+.+.-+.+.+. ..+.+-.+.|..+.+.+..|.++|.+++..+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~-~~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS-- 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF-STGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS-- 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC--
Confidence 677888777777778888866555552 223344555544444443 2466777888888888888889998887531
Q ss_pred CCHHHHhcc
Q psy14485 178 TSPKLYGDI 186 (348)
Q Consensus 178 t~~e~l~~i 186 (348)
+..++++..
T Consensus 209 ~~~~i~~~~ 217 (221)
T PRK00507 209 AGVAILKGL 217 (221)
T ss_pred cHHHHHhcc
Confidence 135555543
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=87.17 E-value=3.2 Score=38.95 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCEE-EEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHH
Q psy14485 102 SVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAY 162 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~ 162 (348)
.+.+.++.+++.|...+ .+... ...+.+++.++++.+.+.+.. +++ +.|.++++.+.
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~ 175 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMS----HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVR 175 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcc----cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHH
Confidence 34444555566665432 22222 123456666666666665432 222 45666655443
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=87.04 E-value=18 Score=33.05 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHH-HHHhC
Q psy14485 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYR-LKKVG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~-Lk~aG 168 (348)
+..+.+.|+++|-+-|+ ..|...+.+...++++..+..|+.+....|. .+++.++. .++-|
T Consensus 88 i~~ai~~GFtSVM~DgS-~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 166 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGS-HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATG 166 (282)
T ss_pred HHHHHHcCCCEEeecCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHC
Confidence 34566779999988776 2333445556666666667677776653221 13344444 44679
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .|..+++. ++.|+.. .++++ ++-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 167 vD~LAvaiGt~HG~yk~-~p~Ldf~~-L~~I~~~--~~iPL---VlHGgSG~~~e~~----~~ai~~G--i~KiNi~ 230 (282)
T TIGR01858 167 VDSLAVAIGTAHGLYKK-TPKLDFDR-LAEIREV--VDVPL---VLHGASDVPDEDV----RRTIELG--ICKVNVA 230 (282)
T ss_pred cCEEecccCccccCcCC-CCccCHHH-HHHHHHH--hCCCe---EEecCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 99999999886556653 33445553 3333322 35554 34455 5555554 4445666 5555543
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=86.90 E-value=17 Score=32.64 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=52.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCC------------------------CC-cccHHHHHHHHHHHHh-cCcEEE
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRE------------------------LK-DRDLDNIENMICEVKK-IGLETC 150 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~------------------------~~-~~~~~~~~~l~~~i~~-~~~~i~ 150 (348)
.+++||..+..+.+.+.|+..|.+..-.++ .. ....+.+.++++.+++ .+.++.
T Consensus 114 DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 114 DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 367777777777777777777666532111 00 0113456777777776 367777
Q ss_pred EecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 151 LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+-.|.-+++.++.+.++|.|.+-+|
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 7778888888888888888887754
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.83 E-value=22 Score=32.52 Aligned_cols=123 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHH-HHhCC
Q psy14485 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRL-KKVGL 169 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~L-k~aG~ 169 (348)
..+.+.|+++|-+-|+ .-|...+.+...++++..+..++.+....|. .+++..+.+ ++-|+
T Consensus 91 ~~ai~~GftSVM~DgS-~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~Tgv 169 (284)
T PRK12857 91 MKCIRNGFTSVMIDGS-KLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGV 169 (284)
T ss_pred HHHHHcCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCC
Confidence 3445679999988876 2333445566667777777777776653221 244555555 45699
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+. .+..+++ +++.++.. .++++ ++-|- |-..+++. .+.+++ +.-|.++
T Consensus 170 D~LAvaiGt~HG~y~~-~p~Ld~~-~L~~i~~~--~~vPL---VlHGgSG~~~e~~~----~ai~~G--i~KiNi~ 232 (284)
T PRK12857 170 DALAIAIGTAHGPYKG-EPKLDFD-RLAKIKEL--VNIPI---VLHGSSGVPDEAIR----KAISLG--VRKVNID 232 (284)
T ss_pred CEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHHH----HHHHcC--CeEEEeC
Confidence 9999999886556653 2334554 33333332 24444 45555 65655544 344565 5555443
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=86.75 E-value=6.3 Score=34.68 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c-CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 98 LSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.+.+++...+..+.+ .|.+-||+-.|+......+. ++++.+++ . ++++.+-.|..+.+.++.+.++|+|++-+
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~----e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPP----ELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCH----HHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 467788877776666 59999999644222222223 33444443 2 57788888999999999999999999987
Q ss_pred c
Q psy14485 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 208 G 208 (223)
T TIGR01768 208 G 208 (223)
T ss_pred C
Confidence 5
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=2.7 Score=37.08 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+|+++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++=. .-+.+.++.-++.|.+
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGldv-~~~~~~l~~~i~~L~~~gIrVSLFi-dP~~~qi~~A~~~GAd 149 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGLDV-AGQFDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGAD 149 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh-hcCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46677665544 4556666521 1111 2356789999999999998887655 4678999999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHH
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 226 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~ 226 (348)
+|.+.-+.-.+.+.. ......+.+..+.+.+++.|+.++++ +|=+++.+..
T Consensus 150 ~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnAG----HgLny~Nv~~ 200 (239)
T PRK05265 150 RIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNAG----HGLNYHNVKP 200 (239)
T ss_pred EEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHhHHH
Confidence 998865441111211 11224667777788888889888764 5556555443
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.67 E-value=16 Score=32.07 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CC-CHHHHHHHHHhCCCeeeccCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-ML-NENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l-~~e~l~~Lk~aG~~~i~~g~e 177 (348)
.+-+.+.++.+++.|+..|+++.-. .....+.+.+.++++.....++.++--.. .. ..+.++.|.+.|+.||.-+=+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt-~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg 150 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT-ADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGG 150 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec-CCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCC
Confidence 4455666777889999999887652 23356778888887776644444432222 12 447899999999999873211
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHH
Q psy14485 178 TSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l 228 (348)
. .+..+-++.++.+-+ ++ -...+|.|-|=+.+.+.+..
T Consensus 151 ~-----------~sa~eg~~~l~~li~~a~--gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 151 K-----------ASALEGLDLLKRLIEQAK--GRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred c-----------CchhhhHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHH
Confidence 1 222333333333322 22 23456788887777665543
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=25 Score=31.91 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCCCc---ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW---RELKD---RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~---~~~~~---~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+.+++.++.+++.|+.-+ ..+.. ++|.. ...+.+..+.+..++.|+.+.+. ..+.+.++.+.+. ++.+
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~-r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te--~~d~~~~~~l~~~-vd~~ 114 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHML-RGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE--VMDTRDVEEVADY-ADML 114 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe--eCChhhHHHHHHh-CCEE
Confidence 57888999999999888744 33321 11111 12334444444445568887544 4677778888888 8888
Q ss_pred eccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 173 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.++--+ .+ ...++.+.+.|.+|. +=-|..-+.+++...++.+..-+ ...+.+ -..|
T Consensus 115 kIga~~~~n---------------~~LL~~~a~~gkPV~--lk~G~~~s~~e~~~A~e~i~~~G--n~~i~L----~~rG 171 (266)
T PRK13398 115 QIGSRNMQN---------------FELLKEVGKTKKPIL--LKRGMSATLEEWLYAAEYIMSEG--NENVVL----CERG 171 (266)
T ss_pred EECcccccC---------------HHHHHHHhcCCCcEE--EeCCCCCCHHHHHHHHHHHHhcC--CCeEEE----EECC
Confidence 876533 11 122333434455432 12233447888888888888766 333322 2345
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHCCCC-ceecc--ccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 252 TP-LYGSSILDPLEFIRTIAVARITMPTS-RIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 252 T~-l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +.+++ ...-.+..+...|...+-. .+..+ .|+..+.......++.+||++++.+..+
T Consensus 172 ~~t~~~Y~--~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 172 IRTFETYT--RNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCCCCCC--HHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 53 22333 2233455555555443211 11112 2211222556777899999999876544
|
|
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.39 E-value=13 Score=33.84 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC---------CcccHHHHHHHHHHHHhcCcEEEE--ecCC---------CC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL---------KDRDLDNIENMICEVKKIGLETCL--TLGM---------LN 157 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~---------~~~~~~~~~~l~~~i~~~~~~i~~--~~g~---------l~ 157 (348)
.+.+...+.++.+.+.|+..+++-.|+... ...+...+.++++..++.++.+.+ +-.. -.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 688999999999999999999998887421 112346899999999998865543 2111 12
Q ss_pred HHHHHHHHHhCCCeeecc-CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE
Q psy14485 158 ENQAYRLKKVGLDYYNHN-LDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG 213 (348)
Q Consensus 158 ~e~l~~Lk~aG~~~i~~g-~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~ 213 (348)
++.++.+++.|+..|-++ +++ +++. .+-..+.++.|.++.+-|..|-
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~~---------v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQEM---------VNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHHH---------HHHHHHHHHHHHHTT-EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHHH---------HHHHHHHHHHHHHcCcEEEecC
Confidence 788999999999999987 444 3333 3355677888888888776553
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=86.16 E-value=20 Score=30.51 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=98.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy14485 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++....++.+.+.|++.|-+.-. ++ .-.+.++.+++....+.+-.| .++.+.++...++|.+.+..
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~--~~------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLR--TP------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--Ch------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 3457899999999999999998877543 21 133466666664223444555 45699999999999998853
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+ +++ .+.++.+++.|..+ ++|.. |.++..+. .+.+ .+.+.+++ .++
T Consensus 83 p-~~~----------------~~~~~~~~~~~~~~----i~gv~-t~~e~~~A----~~~G--ad~i~~~p-----~~~- 128 (190)
T cd00452 83 P-GLD----------------PEVVKAANRAGIPL----LPGVA-TPTEIMQA----LELG--ADIVKLFP-----AEA- 128 (190)
T ss_pred C-CCC----------------HHHHHHHHHcCCcE----ECCcC-CHHHHHHH----HHCC--CCEEEEcC-----Ccc-
Confidence 2 222 23556666677643 55654 66665444 3566 88888642 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. .. +.+...+..+|+..+-+.+|- ..+.-...+.+||+.+..+.-+
T Consensus 129 -----~-g~---~~~~~l~~~~~~~p~~a~GGI---~~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 129 -----V-GP---AYIKALKGPFPQVRFMPTGGV---SLDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred -----c-CH---HHHHHHHhhCCCCeEEEeCCC---CHHHHHHHHHCCCEEEEEchhc
Confidence 1 12 233344555666444344432 2333445688999999666533
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=27 Score=31.94 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=101.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.+.+...++.+.+.+..-|.-.+.+ .....+.+.+..++....+ ..+++.++.. ..+.+.++..-++|++.|-+.
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~-~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEV-RLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcc-hhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 456666666666666665544333221 2223456667767665544 5778888776 457789999999999988764
Q ss_pred CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE-eee-------c-CCCHHHHHHHHHHHHhcCCCCCeeec--
Q psy14485 176 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG-IIG-------L-SESRDQRAELIFQLANLNPYPESVPI-- 243 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~-i~G-------l-get~e~~~~~l~~l~~l~~~~~~i~~-- 243 (348)
--+ +. ....+...+..+.+++.|..+...+ -+| . |.+..+..+..++..+.+ +|.+.+
T Consensus 105 ~s~~~~--------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAvai 174 (281)
T PRK06806 105 GSHLPL--------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAVAI 174 (281)
T ss_pred CCCCCH--------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEEcc
Confidence 322 11 1133455667788888898765432 222 0 111122333344455566 788877
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceee
Q psy14485 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
.+.++.. + ..+..+.+.+.++-.... +|= +-. +| ..+..+.-..++.+|++.+-
T Consensus 175 G~~hg~~--~--~~~~l~~~~L~~i~~~~~--iPl--V~h-G~-SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 175 GNAHGMY--N--GDPNLRFDRLQEINDVVH--IPL--VLH-GG-SGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred CCCCCCC--C--CCCccCHHHHHHHHHhcC--CCE--EEE-CC-CCCCHHHHHHHHHcCCcEEE
Confidence 5555422 1 223444443333332211 221 111 10 11233444557899999983
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.8 Score=37.00 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++=. .-+.+.++.-++.|.+
T Consensus 72 ~~emi~ia~~v---kP~~vtLVPEkr~ElTTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFi-DP~~~qi~~A~~~GAd 146 (237)
T TIGR00559 72 TEEMIRIAEEI---KPEQVTLVPEARDEVTTEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFI-DADKDQISAAAEVGAD 146 (237)
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCccCCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46777665544 3456666521 1111 2356789999999999898886543 3458899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHH
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~ 224 (348)
+|.+.-+.-..-+..-......+...++.+.+++.|+.++++ +|=+++.+
T Consensus 147 ~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAG----HgLny~Nv 196 (237)
T TIGR00559 147 RIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAG----HGLNYHNV 196 (237)
T ss_pred EEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHhH
Confidence 998765441111111000123566777778888889888765 55555544
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.5 Score=35.48 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
++++.+.|++.|.+-.. +++.+.++++.++..+ +.+.++ |.++.+.+..+.+.|+|.+++|-
T Consensus 93 ~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~S-GGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 93 AEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEAS-GGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEE-SSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEE-CCCCHHHHHHHHhcCCCEEEcCh
Confidence 34456678888877432 3478888888777643 444444 56899999999999999999864
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.91 E-value=23 Score=30.92 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=58.1
Q ss_pred CcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy14485 146 GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 146 ~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
+.++.++.+.-+.+ ..+.++++|++.|.+++.. .....+. .+. ....+...+.++.+++ .++.+.+.+-.|
T Consensus 54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 54 ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 45555555444443 5667778899999887765 2222221 111 1256666777777766 355555554444
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 217 LSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.... ++..+.+..+.+.+ ++.+.++..
T Consensus 134 ~~~~-~~~~~~~~~l~~~G--vd~i~v~~~ 160 (231)
T cd02801 134 WDDE-EETLELAKALEDAG--ASALTVHGR 160 (231)
T ss_pred cCCc-hHHHHHHHHHHHhC--CCEEEECCC
Confidence 4222 46777778888887 788776554
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=85.91 E-value=5.4 Score=36.33 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCE-EEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHH
Q psy14485 100 IESVITAAQKAKSDGATR-FCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQ 160 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~-i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~ 160 (348)
.+.+...++.+++.|... +.+... ..+..+.+++.++++.+.+.+.. +++ +.|.++++.
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~--~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~ 179 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYT--GSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYA 179 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEec--CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHH
Confidence 344555555555555332 122111 01223455666666665554432 222 355555543
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=22 Score=33.33 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred cEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeeec
Q psy14485 147 LETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIGL 217 (348)
Q Consensus 147 ~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl 217 (348)
.++.+....-+++ -++.++++|+|.|.+++.. .+.+.+. .+. -...+...+.++.+++ .++++++-+=+|.
T Consensus 65 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~ 144 (333)
T PRK11815 65 HPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee
Confidence 3444554444443 3455667788888888766 3444221 111 1356666777777776 4677766555676
Q ss_pred -C-CCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 218 -S-ESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 218 -g-et~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+ +|.++..+.+..+.+.+ ++.+.++.
T Consensus 145 ~~~~t~~~~~~~~~~l~~aG--~d~i~vh~ 172 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAG--CDTFIVHA 172 (333)
T ss_pred CCCcCHHHHHHHHHHHHHhC--CCEEEEcC
Confidence 3 45667777778888887 77777663
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=23 Score=32.45 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH----HhcCcEEEEecCC-----------------CCHHHHHHHHH
Q psy14485 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV----KKIGLETCLTLGM-----------------LNENQAYRLKK 166 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i----~~~~~~i~~~~g~-----------------l~~e~l~~Lk~ 166 (348)
+.+.+.|++.|.+-+.. .+.+...++.+++ +..++.+....|. -+++..+.+.+
T Consensus 85 ~~ai~~Gf~SVM~D~S~-----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 85 MRAIRCGFTSVMIDGSL-----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred HHHHHcCCCEEEEeCCC-----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHH
Confidence 34456799999887652 2334444444444 4456665543221 14566666666
Q ss_pred h-CCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 167 V-GLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 167 a-G~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
. |+|.+-+++.|.--+|+.-+ +..+ ++.++.+++ .++++. +.|- |-..+++ +.+.+++ +.-|.
T Consensus 160 ~TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~~~iPLV---lHGgsg~~~e~~----~~ai~~G--I~KiN 226 (283)
T PRK08185 160 RTGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINERVDIPLV---LHGGSANPDAEI----AESVQLG--VGKIN 226 (283)
T ss_pred hhCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHhhCCCEE---EECCCCCCHHHH----HHHHHCC--CeEEE
Confidence 5 99999999988656665433 3334 444444444 356553 3344 4454544 4455676 55555
Q ss_pred cc
Q psy14485 243 IN 244 (348)
Q Consensus 243 ~~ 244 (348)
++
T Consensus 227 i~ 228 (283)
T PRK08185 227 IS 228 (283)
T ss_pred eC
Confidence 43
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=85.76 E-value=29 Score=31.92 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred HHHHHHHHHH-HHhcCcEEEEecCCCCHH----HHHHHHHhC-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH
Q psy14485 132 LDNIENMICE-VKKIGLETCLTLGMLNEN----QAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN 204 (348)
Q Consensus 132 ~~~~~~l~~~-i~~~~~~i~~~~g~l~~e----~l~~Lk~aG-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~ 204 (348)
.+.+.+.+.. .++.+..+.++.+..+.+ .++.++++| +|.|.+++-. .... ....-.++.+...+.++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~-gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKH-GGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred HHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC-CccccccCHHHHHHHHHHHHH
Confidence 4444444433 333456677776544443 355667788 9999887744 2110 000112466777888888887
Q ss_pred c-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc------CCCC-----CCCC-CCCCHHHHHHHHHH
Q psy14485 205 V-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI------KGTP-----LYGS-SILDPLEFIRTIAV 271 (348)
Q Consensus 205 ~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~------~gT~-----l~~~-~~~~~~~~~~~~a~ 271 (348)
. .+++.+-+ .-+.++..+.++.+.+.+ ++.+.+..-.+- .+.| .... ++......++++..
T Consensus 155 ~~~~pv~vKl----~~~~~~~~~~a~~l~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~ 228 (301)
T PRK07259 155 VVKVPVIVKL----TPNVTDIVEIAKAAEEAG--ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQ 228 (301)
T ss_pred hcCCCEEEEc----CCCchhHHHHHHHHHHcC--CCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHH
Confidence 5 44443332 224457777788888887 776654321110 1111 1111 11101113344444
Q ss_pred HHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCc
Q psy14485 272 ARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINT 334 (348)
Q Consensus 272 ~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p 334 (348)
.+... +..|-..+|-.+ .+.....+.+||+.++.+--+. . ++.. ++..+++.+.||.=
T Consensus 229 i~~~~-~ipvi~~GGI~~--~~da~~~l~aGAd~V~igr~ll-~-~P~~~~~i~~~l~~~~~~~g~~~ 291 (301)
T PRK07259 229 VYQAV-DIPIIGMGGISS--AEDAIEFIMAGASAVQVGTANF-Y-DPYAFPKIIEGLEAYLDKYGIKS 291 (301)
T ss_pred HHHhC-CCCEEEECCCCC--HHHHHHHHHcCCCceeEcHHHh-c-CcHHHHHHHHHHHHHHHHcCCCC
Confidence 44433 222222232222 3444556789999886654221 2 3331 45677888889863
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=85.69 E-value=21 Score=32.60 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHH
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYR 163 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~ 163 (348)
+++.+. .+.+.|+++|-|-|+. -|...+.....++++..+..|+.+....|. .+++.++.
T Consensus 81 ~~~~i~----~ai~~GftSVMiD~S~-l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~ 155 (276)
T cd00947 81 SFELIK----RAIRAGFSSVMIDGSH-LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEE 155 (276)
T ss_pred CHHHHH----HHHHhCCCEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHH
Confidence 445554 3456799999887762 333345566667777777777777654332 23566665
Q ss_pred HHH-hCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCe
Q psy14485 164 LKK-VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 164 Lk~-aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~ 240 (348)
+.+ -|+|.+-+++.|.--.|+.-.+..+++. ++.+++ .++++ ++-|- |-..+++.+ +.+.+ +.-
T Consensus 156 Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~----L~~i~~~~~vPL---VlHGgSG~~~e~~~~----ai~~G--i~K 222 (276)
T cd00947 156 FVEETGVDALAVAIGTSHGAYKGGEPKLDFDR----LKEIAERVNVPL---VLHGGSGIPDEQIRK----AIKLG--VCK 222 (276)
T ss_pred HHHHHCCCEEEeccCccccccCCCCCccCHHH----HHHHHHHhCCCE---EEeCCCCCCHHHHHH----HHHcC--CeE
Confidence 554 6999999999886555553223345542 333332 25554 34455 555555443 34565 555
Q ss_pred eecc
Q psy14485 241 VPIN 244 (348)
Q Consensus 241 i~~~ 244 (348)
|.++
T Consensus 223 iNi~ 226 (276)
T cd00947 223 ININ 226 (276)
T ss_pred EEeC
Confidence 5544
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=85.65 E-value=7.2 Score=34.24 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++++...+..+...|.+-|++-+++. ..+. ++++.+++ . +.++.+-.|..+.|.++.+.++|++++-+|
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe~SG~---~~~~----e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVG 204 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLEYSGA---YGPP----EVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVG 204 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCC---cCCH----HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6899999999988889988888874332 1233 44555554 3 678888889999999999999999999876
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=85.27 E-value=32 Score=32.10 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCC-HHHHHHHHHHHH
Q psy14485 131 DLDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRD-YENRLNTLKNVR 203 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~-~~~~~~~i~~~~ 203 (348)
..+.+.+.++..++ .+..+.++....+. +.++.+.++|+|.+.+++-. ..+ ... .+.. .+.+.+.++.++
T Consensus 83 g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~-~g~~~~~~~~eiv~~v~ 159 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDI-SGAEVEQRYLDILRAVK 159 (325)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCc-ccchHHHHHHHHHHHHH
Confidence 45666666666554 35666666533333 34566677789988887754 111 011 1222 244556677776
Q ss_pred Hc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC------CCCC--C-CCCCHHHHHHHHHHHH
Q psy14485 204 NV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT------PLYG--S-SILDPLEFIRTIAVAR 273 (348)
Q Consensus 204 ~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT------~l~~--~-~~~~~~~~~~~~a~~R 273 (348)
+. .+++.+-+- . ...++.+..+.+.+.+ .+.+.+..-.+.+.- +... . .++.....++++...+
T Consensus 160 ~~~~iPv~vKl~--p--~~~~~~~~a~~l~~~G--adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~ 233 (325)
T cd04739 160 SAVTIPVAVKLS--P--FFSALAHMAKQLDAAG--ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS 233 (325)
T ss_pred hccCCCEEEEcC--C--CccCHHHHHHHHHHcC--CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH
Confidence 63 444433321 1 1235666777777777 777766443322111 0000 0 1111122344444444
Q ss_pred HHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCch
Q psy14485 274 ITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINTR 335 (348)
Q Consensus 274 ~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p~ 335 (348)
... +..|-..+|-.+ .+.....+.+||+.+..+.-+ -..|+.. +++.+++.+.||.=+
T Consensus 234 ~~~-~ipIig~GGI~s--~~Da~e~l~aGA~~Vqv~ta~-~~~gp~~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 234 GRV-KASLAASGGVHD--AEDVVKYLLAGADVVMTTSAL-LRHGPDYIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred ccc-CCCEEEECCCCC--HHHHHHHHHcCCCeeEEehhh-hhcCchHHHHHHHHHHHHHHHcCCCCH
Confidence 322 222333344322 333455677999999765322 2334442 577888999999643
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=85.18 E-value=37 Score=32.61 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHh-c-CcEEEEec-CCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccC--CCCCHHHHHHHHH
Q psy14485 131 DLDNIENMICEVKK-I-GLETCLTL-GMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDII--STRDYENRLNTLK 200 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~-~~~i~~~~-g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~--~~~~~~~~~~~i~ 200 (348)
.++.+++.++.+++ . +..+.+|. +..+.+ .++.+.++|+|.+.+++-. .-...+..+ -.++++...+.++
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 46677776777764 3 46777777 434543 4556667899999988855 321112221 1356666666677
Q ss_pred HHHHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec-ccccccC------CCCC------CCCCCCC-----
Q psy14485 201 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NNLVQIK------GTPL------YGSSILD----- 261 (348)
Q Consensus 201 ~~~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~-~~l~P~~------gT~l------~~~~~~~----- 261 (348)
++++. .+++ ++=+.-+..++.+..+.+.+.+ .+.+.+ +.+.+.. .+|. ......+
T Consensus 176 ~Vk~~~~iPv----~vKLsPn~t~i~~ia~aa~~~G--adgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alk 249 (385)
T PLN02495 176 WINAKATVPV----WAKMTPNITDITQPARVALKSG--CEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVR 249 (385)
T ss_pred HHHHhhcCce----EEEeCCChhhHHHHHHHHHHhC--CCEEEEecccCcccccccccCccccccCCCCCCCCccchhhh
Confidence 77664 2332 2223334455777777777776 666554 3232111 1111 0111112
Q ss_pred HHHHHHHHHHHHHH---CC-CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCC
Q psy14485 262 PLEFIRTIAVARIT---MP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGI 332 (348)
Q Consensus 262 ~~~~~~~~a~~R~~---lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~ 332 (348)
+.-...+..+++.+ ++ +..|-..+|-++ .+-....+.+||+.+-.+.-+ -..|+.. +++.+++.+.||
T Consensus 250 piAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s--~~Da~e~i~aGAs~VQv~Ta~-~~~Gp~vi~~i~~~L~~~m~~~G~ 326 (385)
T PLN02495 250 PIALAKVMAIAKMMKSEFPEDRSLSGIGGVET--GGDAAEFILLGADTVQVCTGV-MMHGYPLVKNLCAELQDFMKKHNF 326 (385)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEECCCCC--HHHHHHHHHhCCCceeEeeee-eecCcHHHHHHHHHHHHHHHHcCC
Confidence 22122222233322 11 223333344333 233455788999998443211 1244442 467888899999
Q ss_pred Cch
Q psy14485 333 NTR 335 (348)
Q Consensus 333 ~p~ 335 (348)
.-.
T Consensus 327 ~si 329 (385)
T PLN02495 327 SSI 329 (385)
T ss_pred CCH
Confidence 743
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=4.8 Score=35.58 Aligned_cols=80 Identities=5% Similarity=0.034 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+|.++.+. +.+. ++++++.+-+...... ..-.++++.+.+ .++++.+..|..+.+.++.|.++|++++.+|-.
T Consensus 31 dp~~~a~~---~~~~-~~~l~ivDldga~~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALR---FSEY-VDKIHVVDLDGAFEGK--PKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHH---HHHh-CCEEEEEECcchhcCC--cchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 56555544 4445 7888776532111111 112345555544 478899999999999999999999999988755
Q ss_pred C-CHHHHh
Q psy14485 178 T-SPKLYG 184 (348)
Q Consensus 178 t-~~e~l~ 184 (348)
+ ++++++
T Consensus 105 a~~~~~l~ 112 (228)
T PRK04128 105 AFDLEFLE 112 (228)
T ss_pred hcCHHHHH
Confidence 5 444444
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=84.78 E-value=20 Score=31.59 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH----HhcCcEEEEecCC--------CCHHHHHH---
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV----KKIGLETCLTLGM--------LNENQAYR--- 163 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i----~~~~~~i~~~~g~--------l~~e~l~~--- 163 (348)
+.+....+++++.+.|+..+.++--.... +.+.+.+.+..+ ++.++.+.++.-. ++.+.+..
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHH
Confidence 44555666777888899887554321111 223334444433 3456666554322 44555554
Q ss_pred -HHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeee-c-CCCHHHHHHHHHHHHhcCCCCC
Q psy14485 164 -LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIG-L-SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 164 -Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~G-l-get~e~~~~~l~~l~~l~~~~~ 239 (348)
..++|.|.|.++..+ + ++.++.+.+ .++++ ++.| . ..|.++..+.+..+.+.+ .+
T Consensus 151 ~a~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~ 209 (235)
T cd00958 151 IGAELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AA 209 (235)
T ss_pred HHHHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--Cc
Confidence 667799988764321 1 233444443 23443 3334 3 368888899999999998 77
Q ss_pred eeeccccc
Q psy14485 240 SVPINNLV 247 (348)
Q Consensus 240 ~i~~~~l~ 247 (348)
.+.+.+-+
T Consensus 210 gv~vg~~i 217 (235)
T cd00958 210 GVAVGRNI 217 (235)
T ss_pred EEEechhh
Confidence 76655543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.75 E-value=6.8 Score=34.75 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=65.0
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHh-CCCe
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV-GLDY 171 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~a-G~~~ 171 (348)
|...+.-++.+.++.+.+.|+..|.++.-. .+....+.+-+.++.+.. .+++..+.|..+-+.++.|++. |+..
T Consensus 141 W~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 141 WQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 333344445555667778899998877531 134456677777777776 6888899999999999999999 8888
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHH
Q psy14485 172 YNHNLDTSPKLYGDIISTRDYENRLNTLK 200 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~ 200 (348)
+-+|= .+|.. ..+.++.+++.+
T Consensus 218 vIvG~----ALy~g---~~~l~ea~~~~~ 239 (241)
T COG0106 218 VIVGR----ALYEG---KFTLEEALACVR 239 (241)
T ss_pred EEEeh----HHhcC---CCCHHHHHHHHh
Confidence 77653 34432 235555555543
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=84.59 E-value=3.9 Score=36.06 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHH-HHHhCCCeeecc
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYR-LKKVGLDYYNHN 175 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~-Lk~aG~~~i~~g 175 (348)
+..+.++.+.+.|+..+.+.+-....... ..-.++++.+++ .++++.++.|..+.+.++. +++.|++.+.++
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~~~--g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGTMK--GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCCcC--CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 34556667778899999887631111111 112455666655 4788888999999999888 999999998865
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=28 Score=30.63 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe----cCC-CCH---HHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT----LGM-LNE---NQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~----~g~-l~~---e~l~~Lk~aG~ 169 (348)
.+.++|.+.++++.+.|+..|++. | .++...-+.++..++.+++- .|. .+. ...+...+.|.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~-----p-----~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN-----P-----SYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC-----H-----HHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 688999999999999999999872 2 22222333444445665543 232 222 34455556788
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+-+.+-+.- ..+. ...++...+-++.+++.--....-+|+-. .-+.+++.+..+.+.+.+ .+.|..+.
T Consensus 89 ~EiD~Vin~-----~~~~-~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKTsT--- 157 (221)
T PRK00507 89 DEIDMVINI-----GALK-SGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKTST--- 157 (221)
T ss_pred ceEeeeccH-----HHhc-CCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEcCC---
Confidence 877653321 1111 23577888888877774212344556655 457788888888888887 77554332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCccee
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
-+. ....+++....|. ...+ +..|..++|-.+. +.....+.+||+.+
T Consensus 158 ----G~~-~~gat~~~v~~m~----~~~~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 158 ----GFS-TGGATVEDVKLMR----ETVGPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCC-CCCCCHHHHHHHH----HHhCCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 221 1224444333333 3333 3567778765443 34555688999998
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=84.38 E-value=7.9 Score=35.94 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=53.5
Q ss_pred HHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy14485 164 LKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 164 Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.+.|++.|.+++.- .+.+.+.-.. -.+++...+.++.+++ .++++++-+=+|..++.++..+.+..+.+.+ +
T Consensus 75 ~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G--~ 152 (309)
T PF01207_consen 75 VAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAG--V 152 (309)
T ss_dssp HCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT---
T ss_pred hhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcc--c
Confidence 333466777776666 4555543211 1477888888888886 5789999999999877888899999999998 8
Q ss_pred Ceeecccccc
Q psy14485 239 ESVPINNLVQ 248 (348)
Q Consensus 239 ~~i~~~~l~P 248 (348)
+.+.++.-.+
T Consensus 153 ~~i~vH~Rt~ 162 (309)
T PF01207_consen 153 SAITVHGRTR 162 (309)
T ss_dssp -EEEEECS-T
T ss_pred ceEEEecCch
Confidence 8888777643
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=84.38 E-value=33 Score=31.44 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=109.7
Q ss_pred CCCEEEEeccC-------CCCCcccHHHHHHHHHHHHh-cCcEEEE--ecCCCCH----HHHHHHHHhCCCeeeccCCCC
Q psy14485 114 GATRFCMGAAW-------RELKDRDLDNIENMICEVKK-IGLETCL--TLGMLNE----NQAYRLKKVGLDYYNHNLDTS 179 (348)
Q Consensus 114 G~~~i~l~gg~-------~~~~~~~~~~~~~l~~~i~~-~~~~i~~--~~g~l~~----e~l~~Lk~aG~~~i~~g~et~ 179 (348)
|++-++++|.+ .+....+++.+.+.++.|.. ..+++.+ ..| .+. ..++.+.++|+..+++-=|+.
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~ 116 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLG 116 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 88888887632 11112456777777777765 3566544 455 454 347888899999888732222
Q ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCCeeeEeEeee----c-CCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 180 PKLYGDII-----STRDYENRLNTLKNVRNVGINICCGGIIG----L-SESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 180 ~e~l~~i~-----~~~~~~~~~~~i~~~~~~G~~i~~~~i~G----l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+..-.... .-.+.++..+.++.++++.-....-++.+ + ++..++.++-.+...+.+ .|.+-+.
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG--AD~ifv~----- 189 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAG--ADGIMIH----- 189 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 22111111 11377888888888887621111222222 2 344666677777777777 7776432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc-ccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHH
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG-RKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g-~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~ 328 (348)
....+.++..++....+..+|+..+-+.++ .... . ....-..|++.+.++......+-....+..+-+.
T Consensus 190 -------~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~--~-~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 190 -------SRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTT--P-TDEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred -------CCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCC--C-HHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 112467788888887776666643322111 1111 1 2234567899987765432222222234444445
Q ss_pred HcCC
Q psy14485 329 KLGI 332 (348)
Q Consensus 329 ~~G~ 332 (348)
+.|-
T Consensus 260 ~~g~ 263 (285)
T TIGR02320 260 EHGR 263 (285)
T ss_pred HcCC
Confidence 5454
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=7.3 Score=35.47 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.++.+.|++.|.+. + .+++.+.++++.++.. .+.+.++.| ++++.++.+.+.|+|.+++|-=
T Consensus 194 ea~~A~~~GaDiI~LD----n---~~~e~l~~~v~~~~~~~~~~~ieAsGg-It~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 194 EAKNAMNAGADIVMCD----N---MSVEEIKEVVAYRNANYPHVLLEASGN-ITLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred HHHHHHHcCCCEEEEC----C---CCHHHHHHHHHHhhccCCCeEEEEECC-CCHHHHHHHHHcCCCEEEeChh
Confidence 3444556777766542 2 2557888888766542 344555555 4999999999999999998753
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=84.24 E-value=27 Score=30.26 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=93.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcE--EEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLE--TCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++-...+.++.+.+.|++.|.+.-.+. +.........+.++.+++. ... +++-... ..+.++.+.++|++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d-~~~~i~~~~~~g~d~v~v 90 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDG-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN-PDRYVPDFAKAGADIITF 90 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccC-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC-HHHHHHHHHHcCCCEEEE
Confidence 3456677788888899999998843211 1101111234566666642 212 2222211 234678888999999765
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.+. .+...+.++.+++.|+.+... ++. .|..+..+.+ ... ++.+.+.+..| |+--
T Consensus 91 h~~~-------------~~~~~~~~~~~~~~~~~~g~~--~~~-~t~~e~~~~~---~~~---~d~i~~~~~~~--g~tg 146 (220)
T PRK05581 91 HVEA-------------SEHIHRLLQLIKSAGIKAGLV--LNP-ATPLEPLEDV---LDL---LDLVLLMSVNP--GFGG 146 (220)
T ss_pred eecc-------------chhHHHHHHHHHHcCCEEEEE--ECC-CCCHHHHHHH---Hhh---CCEEEEEEECC--CCCc
Confidence 3322 123345588888888765442 232 2334433332 222 45555555433 3322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. ......+..+...+-+.+. ..+.+.+| +..+.-.....+||+.++.|..+.
T Consensus 147 ~----~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG---I~~~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 147 Q----KFIPEVLEKIRELRKLIDERGLDILIEVDGG---INADNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred c----cccHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHcCCCEEEEChhhh
Confidence 1 1222334444444444432 22334343 223333345569999998887654
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=38 Score=32.00 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=103.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCc---ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR---ELKD---RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~~~---~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
-+.+++++.++.+++.|++-+. .|.+. +|+. .. +.=+++++++++ .|+.+... ..+.+.++.+.+. +|
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r-~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~te--v~d~~~v~~~~~~-~d 186 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLR-GGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITE--VMDAADLEKIAEV-AD 186 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-eeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHhh-CC
Confidence 3578899999999888876543 33321 1111 12 344455555554 68887543 4778888888888 78
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
.+.++--.. .+ ...++.+.+.|.+|. +=-|+.-|.+++...++++.+-+ ...+.+ -+.
T Consensus 187 ~lqIga~~~----------~n----~~LL~~va~t~kPVl--lk~G~~~t~ee~~~A~e~i~~~G--n~~viL----~er 244 (352)
T PRK13396 187 VIQVGARNM----------QN----FSLLKKVGAQDKPVL--LKRGMAATIDEWLMAAEYILAAG--NPNVIL----CER 244 (352)
T ss_pred eEEECcccc----------cC----HHHHHHHHccCCeEE--EeCCCCCCHHHHHHHHHHHHHcC--CCeEEE----Eec
Confidence 887754220 01 222555555566542 22355568899999999998776 333322 223
Q ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHCCCCce-ecc--ccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 251 GTPLYG--SSILDPLEFIRTIAVARITMPTSRI-RMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 251 gT~l~~--~~~~~~~~~~~~~a~~R~~lp~~~i-~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|+.-+. ++ ...-.++.+...|....-..| ..| .|+..+.......++.+||++++.+...
T Consensus 245 G~rtf~s~y~--~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 245 GIRTFDRQYT--RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred CCccCcCCCC--CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 442221 12 112234455555554321111 122 2432233567788999999999876544
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.4 Score=38.10 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCEE-EEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHH
Q psy14485 102 SVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAY 162 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~ 162 (348)
.+.+.++.+++.|...+ .+... ...+.+++.++++.+.+.+.. +++ +.|.++++.+.
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~ 176 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMS----HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVR 176 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEec----cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHH
Confidence 34444555555665432 22211 123456666666666655432 222 45555554433
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=83.74 E-value=27 Score=32.11 Aligned_cols=124 Identities=16% Similarity=0.270 Sum_probs=70.0
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHHH-hC
Q psy14485 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLKK-VG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk~-aG 168 (348)
+..+.+.|+++|-+-|+ .-|...+.+...++++..+..++.+....|. .+++.++.+-+ -|
T Consensus 93 i~~ai~~GftSVMiDgS-~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 171 (288)
T TIGR00167 93 CAQAVKAGFSSVMIDGS-HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTG 171 (288)
T ss_pred HHHHHHcCCCEEEecCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccC
Confidence 33455679999988776 2233345555666666666667777654332 23466666654 69
Q ss_pred CCeeeccCCCCHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 169 LDYYNHNLDTSPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .+. .+++. ++.|+.. .++++..+ |- |-..+++ +.+.+.+ +.-|.+.
T Consensus 172 vD~LAvaiGt~HG~y~~-~p~~Ld~~~-L~~I~~~--v~vPLVlH---GgSG~~~e~~----~~ai~~G--i~KiNi~ 236 (288)
T TIGR00167 172 VDSLAAAIGNVHGVYKG-EPKGLDFER-LEEIQKY--VNLPLVLH---GGSGIPDEEI----KKAISLG--VVKVNID 236 (288)
T ss_pred CcEEeeccCccccccCC-CCCccCHHH-HHHHHHH--hCCCEEEe---CCCCCCHHHH----HHHHHcC--CeEEEcC
Confidence 99999999886566653 233 34442 3333222 25554433 44 4455554 3444565 5555443
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=83.51 E-value=5.4 Score=35.99 Aligned_cols=68 Identities=13% Similarity=-0.072 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.-++.++...+.|++.++++.-+. ....+ .++++.|.+.++++.+-.|..+ |.++.+.++|+++|.+|
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdg-g~~~n----~~~i~~i~~~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGA-DDASL----AAALEALRAYPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC-CCccc----HHHHHHHHhCCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 335555677788999988876421 11222 4555555555567777777765 99999999999999985
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.29 E-value=34 Score=31.40 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C-c--EEEEe--cCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G-L--ETCLT--LGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~-~--~i~~~--~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+.+.++.+.+.|++.|+|.+... ...+..+.++++.+++. + + .++++ .|.-....+.. .++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIG---VGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYAS-LEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccC---ccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHH-HHhCCCE
Confidence 4688999999999999999999976421 23567888888888863 2 3 34443 34333344444 4789999
Q ss_pred eeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCee
Q psy14485 172 YNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 172 i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i 209 (348)
+...+.. ..--|..=+.+ -..++.+-.++ ..|+.+
T Consensus 228 id~s~~GlGecpfa~g~aGN~~~E~lv~~L~---~~g~~t 264 (287)
T PRK05692 228 FDASVGGLGGCPYAPGASGNVATEDVLYMLH---GLGIET 264 (287)
T ss_pred EEEEccccCCCCCCCCccccccHHHHHHHHH---hcCCCC
Confidence 9876644 22111110012 25566655554 346553
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=83.11 E-value=29 Score=31.90 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC------------------CCHHHHH-HHHHhCC
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM------------------LNENQAY-RLKKVGL 169 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~------------------l~~e~l~-~Lk~aG~ 169 (348)
.+.+.|+++|-|-|+. -|...+.....++++..+..++.+....|. .+++.+. ..++-|+
T Consensus 91 ~ai~~GftSVM~DgS~-l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 91 RAIDAGFTSVMIDGSA-LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp HHHHHTSSEEEEE-TT-S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred HHHHhCcccccccCCc-CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 3445599999887762 233345566677777777778777653221 1345544 5578899
Q ss_pred CeeeccCCCCHHHHhcc-CCCCCHHHHHHHHHHHHH-c-CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 170 DYYNHNLDTSPKLYGDI-ISTRDYENRLNTLKNVRN-V-GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i-~~~~~~~~~~~~i~~~~~-~-G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+.. .|.-+++ .++.+++ . ++++..+ |- |-..|++. .+.+.+ +.-|.+.
T Consensus 170 D~LAvaiGt~HG~y~~~~~p~Ld~~----~L~~I~~~~~~iPLVlH---GgSG~~~e~~~----~ai~~G--i~KiNi~ 235 (287)
T PF01116_consen 170 DALAVAIGTAHGMYKGGKKPKLDFD----RLKEIREAVPDIPLVLH---GGSGLPDEQIR----KAIKNG--ISKINIG 235 (287)
T ss_dssp SEEEE-SSSBSSSBSSSSSTC--HH----HHHHHHHHHHTSEEEES---SCTTS-HHHHH----HHHHTT--EEEEEES
T ss_pred CEEEEecCccccccCCCCCcccCHH----HHHHHHHhcCCCCEEEE---CCCCCCHHHHH----HHHHcC--ceEEEEe
Confidence 99999998854455542 2222443 3333333 2 5665443 44 55555544 344566 5555543
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.07 E-value=30 Score=33.90 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE--e--cCC-CC----HHHHHHHHHhCCCeeec
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL--T--LGM-LN----ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~--~g~-l~----~e~l~~Lk~aG~~~i~~ 174 (348)
...++.+.+.|++.|.+.... + +...+.+.++..++.|..+.+ + .+. .+ .+.++.+.++|+++|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~l---n--d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i 173 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDAL---N--DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICI 173 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEec---C--cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344566677788888765541 1 234677788888877755432 2 221 12 25677788889998887
Q ss_pred c
Q psy14485 175 N 175 (348)
Q Consensus 175 g 175 (348)
.
T Consensus 174 ~ 174 (448)
T PRK12331 174 K 174 (448)
T ss_pred c
Confidence 3
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=82.93 E-value=7.7 Score=34.08 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 105 TAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+.++.+.+.|+..+.+.+-.. .....+. ++++.+.+ .++++.++.|..+.+.++.+++.|++.+.+|
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~----~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPNF----ELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCCH----HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 344556678999887653211 1112233 44444443 4688889999999999999999999998875
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=82.83 E-value=5.7 Score=35.20 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+.++.++.+.+.|++++++.+-.. .. ..+.-.++++.+.+ .++++.+-.|.-+.|.++.+.++|++++.+|-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~--~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDA--IM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcc--cc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 345556667778999999876421 11 22333556666654 4678888899999999999999999999988766
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=82.81 E-value=44 Score=31.74 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC---CC---CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWR---EL---KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~---~~---~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+.+.+.++.+++.|++.+. .|.+. +| .....+.+..+.+..++.|+.+.++ ..+.+.++.+.+. ++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~--v~d~~~~~~l~~~-vd~l 205 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE--IVNPADVEVALDY-VDVI 205 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHHh-CCeE
Confidence 568888888888888876543 33221 11 0124566666666666678888654 4777889999998 8888
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.++--.. .+ ...++.+.+.|.+|.. =-|+.-|.+++...++.+.+-+ ...+.+. ..|+
T Consensus 206 kI~s~~~----------~n----~~LL~~~a~~gkPVil--k~G~~~t~~e~~~Ave~i~~~G--n~~i~L~----erg~ 263 (360)
T PRK12595 206 QIGARNM----------QN----FELLKAAGRVNKPVLL--KRGLSATIEEFIYAAEYIMSQG--NGQIILC----ERGI 263 (360)
T ss_pred EECcccc----------cC----HHHHHHHHccCCcEEE--eCCCCCCHHHHHHHHHHHHHCC--CCCEEEE----CCcc
Confidence 7754220 01 1345555556665421 1234458999999999998876 3333221 1244
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cccccccc-----hhhHHHHHHhCcceeeeCCee
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRM-SAGRKEMG-----ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s~g~~~l~-----~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..|..+... .-.++.+...|..+.-. |-+ + .|..+ ......|+.+||++++.+..+
T Consensus 264 s~yp~~~~~-~ldl~~i~~lk~~~~~P-V~~d~--~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 264 RTYEKATRN-TLDISAVPILKQETHLP-VMVDV--THSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCCCCCC-CcCHHHHHHHHHHhCCC-EEEeC--CCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 333211001 01345555555433211 222 2 13333 345666899999998876544
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=82.75 E-value=14 Score=34.36 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=70.0
Q ss_pred ccCHHHHHHHHHHHHhCCCC-------EEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHH
Q psy14485 97 ILSIESVITAAQKAKSDGAT-------RFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---LNENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~-------~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---l~~e~l~~Lk~ 166 (348)
..+.+++.+....-...|+. -|-..++....+.....-+....+.-++.|++++++++. ...+.++.|++
T Consensus 99 ~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e 178 (308)
T PF02126_consen 99 EASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEE 178 (308)
T ss_dssp TSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHH
Confidence 46778877765433344443 233333321222222222333334444579988887654 44799999999
Q ss_pred hCCC--eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe----eec-------CCCHHHHHHHHHHHHh
Q psy14485 167 VGLD--YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI----IGL-------SESRDQRAELIFQLAN 233 (348)
Q Consensus 167 aG~~--~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i----~Gl-------get~e~~~~~l~~l~~ 233 (348)
+|++ ++.++- +....+. +.++.+-+.|..++.+.+ +|. ..+++++++.+..|.+
T Consensus 179 ~Gv~~~rvvigH---------~D~~~D~----~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~ 245 (308)
T PF02126_consen 179 EGVDPSRVVIGH---------MDRNPDL----DYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIE 245 (308)
T ss_dssp TT--GGGEEETS---------GGGST-H----HHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHH
T ss_pred cCCChhHeEEeC---------CCCCCCH----HHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHH
Confidence 9985 333321 1112232 234555567988888755 244 2567889999999888
Q ss_pred cCCCCCeee
Q psy14485 234 LNPYPESVP 242 (348)
Q Consensus 234 l~~~~~~i~ 242 (348)
-+ ..+.|-
T Consensus 246 ~G-y~~qIl 253 (308)
T PF02126_consen 246 EG-YADQIL 253 (308)
T ss_dssp TT-TGGGEE
T ss_pred cC-CcCcEE
Confidence 77 244443
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=30 Score=30.70 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-------ecCCCC-HHHHHHHHHhCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-------TLGMLN-ENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-------~~g~l~-~e~l~~Lk~aG~ 169 (348)
+..+...+......|+..|-++=.+........+.+..+++.++.. +..+-. ..|.++ .+.....+++|+
T Consensus 66 p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 66 PGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred chHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 4777777777777899987664221111122234444455556653 222221 233434 467788899999
Q ss_pred CeeeccCCC-C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 170 DYYNHNLDT-S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et-~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+.+-+ +| . ..+|+.+ +.++.-+.++.+|++|+.+ |+ |.= ..+++..|+.++ |+.++|-
T Consensus 146 ~g~Ml--DTa~Kdg~~Lfd~l----~~~~L~~Fv~~ar~~Gl~~------gLAGSL---~~~dip~L~~l~--pD~lGfR 208 (238)
T PRK02227 146 DGAML--DTAIKDGKSLFDHM----DEEELAEFVAEARSHGLMS------ALAGSL---KFEDIPALKRLG--PDILGVR 208 (238)
T ss_pred CEEEE--ecccCCCcchHhhC----CHHHHHHHHHHHHHcccHh------HhcccC---chhhHHHHHhcC--CCEEEec
Confidence 98875 55 2 3444433 7888899999999998754 33 321 245677889998 9999987
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHH
Q psy14485 245 NLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
.-.=..|- +...++++...++.+.
T Consensus 209 gavC~g~d---R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 209 GAVCGGGD---RTGRIDPELVAELREA 232 (238)
T ss_pred hhccCCCC---cccccCHHHHHHHHHH
Confidence 65533321 2344566555554443
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=82.58 E-value=24 Score=31.51 Aligned_cols=92 Identities=23% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCEEEEeccCCC--------C-CcccHHHHHHHHHHHHhcCcEEEEecC-C----CC----HHHHHHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRE--------L-KDRDLDNIENMICEVKKIGLETCLTLG-M----LN----ENQAYRLK 165 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~--------~-~~~~~~~~~~l~~~i~~~~~~i~~~~g-~----l~----~e~l~~Lk 165 (348)
.+.++.+.+.|+..|.+.....+ - .....+.+.+.++.+++.++++.++.. . .+ .+.++.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 33445566678888766544110 0 001345666666777777777766542 2 22 35667777
Q ss_pred HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH
Q psy14485 166 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN 204 (348)
Q Consensus 166 ~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~ 204 (348)
++|++.+.+.- | . ...+++++.+.++.+++
T Consensus 157 ~~g~~~i~l~D-t-------~-G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 157 EAGADEISLKD-T-------V-GLATPEEVAELVKALRE 186 (265)
T ss_pred HcCCCEEEech-h-------c-CCcCHHHHHHHHHHHHH
Confidence 78888877521 1 0 11345555555655555
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=23 Score=35.26 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHhCCCeeeccCCC-C
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT-S 179 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~-g~l~~e~l~~Lk~aG~~~i~~g~et-~ 179 (348)
+..+.++.+.+.|+.-|.+... ...+ .+..+.++.+++....+.+-. +..+.+..+.+.++|+|.+.+|+.. +
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a-~G~s----~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS-QGNS----IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC-CCCc----hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 3377788889999999988654 1111 234678888887522233333 4678999999999999999876643 2
Q ss_pred H---HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy14485 180 P---KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 180 ~---e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
- .....++.+ ....+.++.+.+++.|+++.++ |=-.|..|+.+.+.
T Consensus 316 ~~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vIad---GGi~~~~di~kAla 364 (495)
T PTZ00314 316 ICITQEVCAVGRP-QASAVYHVARYARERGVPCIAD---GGIKNSGDICKALA 364 (495)
T ss_pred ccccchhccCCCC-hHHHHHHHHHHHhhcCCeEEec---CCCCCHHHHHHHHH
Confidence 1 111111111 3456667777888888765431 11246677666653
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.32 E-value=11 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCeeeccCCCCHHH----------HhccCCCCCHHHHHHHHHHHHHcCCe
Q psy14485 159 NQAYRLKKVGLDYYNHNLDTSPKL----------YGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et~~e~----------l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
+.++.|-++|+|-+.+|+-.++-+ .+.+..+.+.++.++.++.+++.+..
T Consensus 35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 445556667777777776543222 22444566777777777777766544
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=82.24 E-value=10 Score=35.34 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-------cHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHh-CC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDR-------DLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV-GL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-------~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~a-G~ 169 (348)
+.++.++.++.+.+.|+..|.++++....... ......+.++.+++ .++++.++.+..+.+.++.+.+. |+
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~a 305 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKA 305 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 46777777777888888888777663211110 11344566666665 36777777777778888877777 68
Q ss_pred Ceeecc
Q psy14485 170 DYYNHN 175 (348)
Q Consensus 170 ~~i~~g 175 (348)
|.|.++
T Consensus 306 D~V~ig 311 (327)
T cd02803 306 DLVALG 311 (327)
T ss_pred Ceeeec
Confidence 888775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=82.24 E-value=10 Score=33.41 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.+ .+.+.|+.+|.+.+-.. +....+. ++++.+.+ .+.++.++.|.-+.+.++.|++.|++.+-+
T Consensus 147 ~~~~~~~~---~~~~~g~~~ii~tdi~~dGt~~G~d~----~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAK---RLEELGAGEIILTDIDRDGTMQGPDL----ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHH---HHHHTT-SEEEEEETTTTTTSSS--H----HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHH---HHHhcCCcEEEEeeccccCCcCCCCH----HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45655554 56678999998775321 1222333 44555543 378999999999999999999999988876
Q ss_pred c
Q psy14485 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 220 g 220 (229)
T PF00977_consen 220 G 220 (229)
T ss_dssp S
T ss_pred e
Confidence 4
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=82.18 E-value=38 Score=30.55 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCC---CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW---REL---KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~---~~~---~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+++++.++.+.+.+.+ +...+-. ++| .....+.+..+.+..++.|+.+.++ ..+.+.++.+.+. ++.+
T Consensus 37 ~~~~~~~~A~~lk~~~~k-~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~--~~d~~~~~~l~~~-~d~l 112 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAK-ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTE--VMDPRDVEIVAEY-ADIL 112 (260)
T ss_pred CHHHHHHHHHHHHHHHHH-hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEe--eCChhhHHHHHhh-CCEE
Confidence 456677777776655543 1111100 111 0012234444444444568877654 4677778888887 8887
Q ss_pred eccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 173 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.++--. .+ ...++.+.+.|.+|.. =-|+.-+.+++...++.+++-+ ...+.+. ..|
T Consensus 113 kI~s~~~~n---------------~~LL~~~a~~gkPVil--k~G~~~t~~e~~~Ave~i~~~G--n~~i~l~----~rG 169 (260)
T TIGR01361 113 QIGARNMQN---------------FELLKEVGKQGKPVLL--KRGMGNTIEEWLYAAEYILSSG--NGNVILC----ERG 169 (260)
T ss_pred EECcccccC---------------HHHHHHHhcCCCcEEE--eCCCCCCHHHHHHHHHHHHHcC--CCcEEEE----ECC
Confidence 775422 10 1234455556665421 2244457899999999998876 4443331 224
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-c---ccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRM-S---AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s---~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|.-+. +.+...-.++.+...|..+. ..|-+ + .|+..........++..||++++.+..+
T Consensus 170 ~s~y~-~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 170 IRTFE-KATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CCCCC-CCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 43321 11111223444444544332 11222 1 3322222556677899999998766543
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=82.14 E-value=45 Score=31.29 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEe
Q psy14485 133 DNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 212 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~ 212 (348)
+++.++.+..++.|+.+..++ .+.+.++.|.+.|++.+-++--. + .....++.+.+.|.++-.
T Consensus 76 e~~~~L~~~~~~~Gi~~~stp--fd~~svd~l~~~~v~~~KIaS~~---~-----------~n~pLL~~~A~~gkPvil- 138 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTP--FDLESADFLEDLGVPRFKIPSGE---I-----------TNAPLLKKIARFGKPVIL- 138 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEe--CCHHHHHHHHhcCCCEEEECccc---c-----------cCHHHHHHHHhcCCcEEE-
Confidence 455555555555676665443 66777777777777766653211 0 113456666667776421
Q ss_pred EeeecCCCHHHHHHHHHHHHhcCCCCC--eeec-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc
Q psy14485 213 GIIGLSESRDQRAELIFQLANLNPYPE--SVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE 289 (348)
Q Consensus 213 ~i~Glget~e~~~~~l~~l~~l~~~~~--~i~~-~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~ 289 (348)
--|+ -|.+++...++++++-+ .. .+.+ +... .+|.+..+--++.+...+..++ ..|-+| -|.
T Consensus 139 -StGm-atl~Ei~~Av~~i~~~G--~~~~~i~llhC~s--------~YP~~~~~~nL~~I~~Lk~~f~-~pVG~S--dHt 203 (329)
T TIGR03569 139 -STGM-ATLEEIEAAVGVLRDAG--TPDSNITLLHCTT--------EYPAPFEDVNLNAMDTLKEAFD-LPVGYS--DHT 203 (329)
T ss_pred -ECCC-CCHHHHHHHHHHHHHcC--CCcCcEEEEEECC--------CCCCCcccCCHHHHHHHHHHhC-CCEEEC--CCC
Confidence 1233 48999999999998876 32 1222 2211 1222223345667777776664 334344 366
Q ss_pred cchhhHHHHHHhCccee
Q psy14485 290 MGETTQAFCFLAGANSI 306 (348)
Q Consensus 290 l~~~~~~~~l~~GAn~~ 306 (348)
.+......++..||+.+
T Consensus 204 ~G~~~~~aAvalGA~iI 220 (329)
T TIGR03569 204 LGIEAPIAAVALGATVI 220 (329)
T ss_pred ccHHHHHHHHHcCCCEE
Confidence 66667778899999955
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.09 E-value=5 Score=34.93 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
..+|++..+ .+..-..++++-. |-+. ....+.+.+.+++++..|+.+++-.. .+++.++.-++.|.
T Consensus 72 ~teEml~ia---~~~kP~~vtLVPe~r~evTTegGlD~-~~~~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA 146 (243)
T COG0854 72 PTEEMLAIA---LKTKPHQVTLVPEKREEVTTEGGLDV-AGQLDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGA 146 (243)
T ss_pred chHHHHHHH---HhcCCCeEEeCCCchhhcccccchhh-hhhhhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCC
Confidence 356664443 3444566666532 1111 12467889999999999999876554 78899999999999
Q ss_pred CeeeccCCCCHHHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHH
Q psy14485 170 DYYNHNLDTSPKLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIF 229 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~ 229 (348)
++|.+--.--.+.++.-.+ ..-++..-.+.+.+.+.|+.++.+ -|+ ..+...++....
T Consensus 147 ~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAG--HgLty~Nv~~~a~~~~ 208 (243)
T COG0854 147 PRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAG--HGLTYHNVKPLAAIPP 208 (243)
T ss_pred CEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecC--CCccccchHHHhcCCc
Confidence 9998632210111110000 012334555666777788888765 344 445444444433
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.80 E-value=18 Score=32.77 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCC-------------------------CCcccHHHHHHHHHHHHh-cCcEEE
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRE-------------------------LKDRDLDNIENMICEVKK-IGLETC 150 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-------------------------~~~~~~~~~~~l~~~i~~-~~~~i~ 150 (348)
.++++|..+..+.+.+.|+.-+.+..-.++ -.....+.+.++++.+++ .+.++.
T Consensus 127 DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~ 206 (263)
T CHL00200 127 DLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPII 206 (263)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEE
Confidence 356777776666677777766655533110 001123456667777776 366677
Q ss_pred EecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 151 LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+-.|.-++|.++.+.++|.|.+-+|
T Consensus 207 vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 207 LGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred EECCcCCHHHHHHHHhcCCCEEEEC
Confidence 7777777888888888888887764
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=81.75 E-value=19 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCee--e--EeEeee
Q psy14485 197 NTLKNVRNVGINI--C--CGGIIG 216 (348)
Q Consensus 197 ~~i~~~~~~G~~i--~--~~~i~G 216 (348)
+.++.+++.|+.+ | +.+..|
T Consensus 224 ~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 224 ELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred HHHHHHHHcCceEEECCccccccc
Confidence 5678888888754 3 444555
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=81.68 E-value=4 Score=34.14 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy14485 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
.+.++..+.++.+|+.|+.+..++++.+ +.
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3789999999999999999999999988 55
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=81.51 E-value=10 Score=34.57 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++.+.|++.|.+-. .+++.+.+.++.++.....+.+ -.|.++.+.+..+.+.|+|.++.|.=+
T Consensus 199 eea~ea~~~GaDiI~lDn-------~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 199 EQALTVLQASPDILQLDK-------FTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHHHHcCcCEEEECC-------CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence 344455667887776632 3557888888888753333332 256799999999999999999987533
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=81.46 E-value=46 Score=31.01 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeeec--CCCHHHHHHHHHHHHhc
Q psy14485 162 YRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIGL--SESRDQRAELIFQLANL 234 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l 234 (348)
+.+.++|++.|.+++.- .+.+.+. .+. -..++...+.++.+++ .++++++-+=+|. .++.++..+.++.+.+.
T Consensus 74 ~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~ 153 (318)
T TIGR00742 74 KIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGK 153 (318)
T ss_pred HHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHc
Confidence 34445677777777755 3443321 111 1367777788888876 4778887777777 23556777777778777
Q ss_pred CCCCCeeecccccc
Q psy14485 235 NPYPESVPINNLVQ 248 (348)
Q Consensus 235 ~~~~~~i~~~~l~P 248 (348)
+ ++.+.++.-..
T Consensus 154 G--~~~itvHgRt~ 165 (318)
T TIGR00742 154 G--CQNFIVHARKA 165 (318)
T ss_pred C--CCEEEEeCCch
Confidence 7 77776665543
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=81.32 E-value=23 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCccc--------HHHHHHHHHHHHhcCc-EEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRD--------LDNIENMICEVKKIGL-ETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~--------~~~~~~l~~~i~~~~~-~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+.++...+.|+..|++... +....+ ..++.++++.+++.+. .+.++.-.-....++.+.+.|++.+++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~--~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDS--SGSLISPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEET--TGGGS-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCccccccc--ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEc
Confidence 3344456779998877663 122222 3356667777777665 5544433234448999999999988864
Q ss_pred C
Q psy14485 176 L 176 (348)
Q Consensus 176 ~ 176 (348)
-
T Consensus 264 ~ 264 (343)
T PF01208_consen 264 E 264 (343)
T ss_dssp T
T ss_pred C
Confidence 3
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=81.15 E-value=40 Score=31.50 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccH--------HHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDL--------DNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~--------~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+.+.++...+.|+..|.+..........+. +++.++++.+++.+....+ ..|.. ...+..+++.|++.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-QPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-hhhHHHHHHhCCCEEe
Confidence 344445556779988766553211112222 3445566666654322222 23433 4568889999999877
Q ss_pred cc
Q psy14485 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
+.
T Consensus 261 ~d 262 (340)
T TIGR01463 261 VD 262 (340)
T ss_pred ec
Confidence 53
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=81.12 E-value=7.6 Score=35.60 Aligned_cols=14 Identities=0% Similarity=-0.092 Sum_probs=9.7
Q ss_pred cCCCCCHHHHHHhh
Q psy14485 25 QSLIWKLDEVINLF 38 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll 38 (348)
+++.+|.+|.+...
T Consensus 57 D~~~~~~~e~~~~~ 70 (285)
T TIGR02320 57 DIEEASWTQRLDVV 70 (285)
T ss_pred CcCcCCHHHHHHHH
Confidence 45668888887654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=81.03 E-value=13 Score=34.81 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHH-hCCCeeeccCCC-
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK-VGLDYYNHNLDT- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~-aG~~~i~~g~et- 178 (348)
+..+.++.+.+.|+..|.+.+......... ..-.++++.+++ .++++..+.|..+.+.++.+.+ .|+|.|.+|=..
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCC-CcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 566667777788999888876521111001 011356666665 4788888899889988888886 699999887443
Q ss_pred -CHHHHhcc
Q psy14485 179 -SPKLYGDI 186 (348)
Q Consensus 179 -~~e~l~~i 186 (348)
+|.+++.+
T Consensus 229 ~nP~if~~~ 237 (321)
T PRK10415 229 GRPWIFREI 237 (321)
T ss_pred cCChHHHHH
Confidence 45555543
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=80.88 E-value=49 Score=30.97 Aligned_cols=176 Identities=15% Similarity=0.139 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC-C---CC------------------------cccHHHHHHHHHHHHhcCcEEE
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWR-E---LK------------------------DRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~-~---~~------------------------~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.+...+.++.+.+.|++-|-|+.-.. . +. ..+.+++.++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 567777777788888888776664210 0 00 0112333344444444565554
Q ss_pred EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHH
Q psy14485 151 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQ 230 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~ 230 (348)
++ ..+.+.++.+.+.|++.+.++--. -.....++.+.+.|.++- +=-|+ -|.+++...++.
T Consensus 95 st--pfd~~svd~l~~~~v~~~KI~S~~--------------~~n~~LL~~va~~gkPvi--lstG~-~t~~Ei~~Av~~ 155 (327)
T TIGR03586 95 SS--PFDETAVDFLESLDVPAYKIASFE--------------ITDLPLIRYVAKTGKPII--MSTGI-ATLEEIQEAVEA 155 (327)
T ss_pred Ec--cCCHHHHHHHHHcCCCEEEECCcc--------------ccCHHHHHHHHhcCCcEE--EECCC-CCHHHHHHHHHH
Confidence 33 355666666666666655542110 012344555666677653 12234 489999999999
Q ss_pred HHhcCCCCCeee-cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy14485 231 LANLNPYPESVP-INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 231 l~~l~~~~~~i~-~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
+.+-+ ...+. ++...-+| || ...-.++.+...+..++ ..|-+|. |..+......++.+||+-+
T Consensus 156 i~~~g--~~~i~LlhC~s~YP-~~-------~~~~nL~~i~~lk~~f~-~pVG~SD--Ht~G~~~~~aAva~GA~iI 219 (327)
T TIGR03586 156 CREAG--CKDLVLLKCTSSYP-AP-------LEDANLRTIPDLAERFN-VPVGLSD--HTLGILAPVAAVALGACVI 219 (327)
T ss_pred HHHCC--CCcEEEEecCCCCC-CC-------cccCCHHHHHHHHHHhC-CCEEeeC--CCCchHHHHHHHHcCCCEE
Confidence 98876 33332 22222122 22 22334566666666553 3343342 6666677788999999854
|
|
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
Probab=80.71 E-value=28 Score=32.72 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..+.+..++++..+.+.|..-|.+.- |.....+.+.++.+.+++.+.++-+-.. -++...+-.-.++ ++.+-++
T Consensus 27 t~Dv~atv~QI~~L~~aGceivRvav----p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~-v~kiRIN 101 (359)
T PF04551_consen 27 TRDVEATVAQIKRLEEAGCEIVRVAV----PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEA-VDKIRIN 101 (359)
T ss_dssp TT-HHHHHHHHHHHHHCT-SEEEEEE-----SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC--SEEEE-
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC----CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHH-hCeEEEC
Confidence 35778888899999999998887743 3345677788888887775443322221 2333333334455 7777776
Q ss_pred CCC-CHHHHhccCCCCC-HHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 176 LDT-SPKLYGDIISTRD-YENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~-~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
... .++..+ ...+ .+.+.+.++.+++.|+.+..++=-|-
T Consensus 102 PGNi~~~~~~---~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 102 PGNIVDEFQE---ELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp TTTSS----S---S-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CCcccccccc---cccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 655 331111 1123 56666677777777777766665554
|
It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=20 Score=33.38 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCC-Cccc-HHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHH-HhCCCeeeccC
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWREL-KDRD-LDNIENMICEVKK-IGLETCLTLGMLNENQAYRLK-KVGLDYYNHNL 176 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~-~~~~-~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk-~aG~~~i~~g~ 176 (348)
++..+.++.+.+.|+..+.+.+..... +..+ .+ .+.++.+++ .++++..|.+..+.+.++.+. ..|+|.|.+|=
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~--~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN--WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc--HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 556777777888899999887652111 1111 11 256666665 478888888888998888765 57999999975
Q ss_pred CC--CHHHHhccCC---CCCHHHHHHHHH
Q psy14485 177 DT--SPKLYGDIIS---TRDYENRLNTLK 200 (348)
Q Consensus 177 et--~~e~l~~i~~---~~~~~~~~~~i~ 200 (348)
.. +|.+++.+.. ..+++++++.+.
T Consensus 226 g~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 226 GALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred HhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 54 5777776642 124555544443
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=80.36 E-value=13 Score=29.80 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+++++++.+. +.++.-|.+++-. ....+.+.++++.+++.+. .+.+ -.|....+..+.|+++|++++.
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~----~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA----GGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch----hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 57888887654 5578888887642 1245678888888988643 2222 3556778889999999999875
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=36 Score=33.53 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHHH-HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC----C-C----CHHHHHHHHHhCC
Q psy14485 100 IESVIT-AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG----M-L----NENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~-~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g----~-l----~~e~l~~Lk~aG~ 169 (348)
+++|++ -++.+.+.|++.|.+.+. + -+.+.+...++.+++.|.++.++.. . - -.+.++.+.++|+
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~---l--nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Ga 177 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDA---L--NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGA 177 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEccc---C--CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCC
Confidence 345444 456677889999877654 2 2567888888988887766433211 1 1 1256778888999
Q ss_pred Ceeecc--CCC-CH-HHH---hccCC---------CC-CHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 170 DYYNHN--LDT-SP-KLY---GDIIS---------TR-DYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 170 ~~i~~g--~et-~~-e~l---~~i~~---------~~-~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
++|.+. ... .| +++ +.++. .| +..-.....-.+-++|..+.-.-+-|+
T Consensus 178 d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~ 242 (468)
T PRK12581 178 DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPF 242 (468)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecccc
Confidence 999873 222 22 222 22221 12 444455555556678875332224455
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.10 E-value=58 Score=32.25 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 155 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.-..+.++.|.++|++.+-+. ++ + +|+ +..++.++.+|+.- ....+|.|.+-|.+...+ |.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D--~a-------~-g~~-~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~----l~~~ 286 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVID--TA-------H-GHQ-VKMISAIKAVRALD--LGVPIVAGNVVSAEGVRD----LLEA 286 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEe--CC-------C-CCc-HHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHH----HHHh
Confidence 345689999999999987752 21 1 333 67788888888852 234556687778776544 4456
Q ss_pred CCCCCeeecccccccCCCCC----C-CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy14485 235 NPYPESVPINNLVQIKGTPL----Y-GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l----~-~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
+ .+.|.+.. -+||-. . ....+...-.++....++.. +..+-+.+|-.+ +..-..++.+||+.+|.|
T Consensus 287 G--~d~i~vg~---g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~--~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 287 G--ANIIKVGV---GPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRH--PRDVALALAAGASNVMVG 357 (475)
T ss_pred C--CCEEEECC---cCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCC--HHHHHHHHHcCCCEEeec
Confidence 6 67665322 122221 1 22344555555665555554 333434444333 334456899999999876
Q ss_pred Ce
Q psy14485 310 DK 311 (348)
Q Consensus 310 ~~ 311 (348)
..
T Consensus 358 ~~ 359 (475)
T TIGR01303 358 SW 359 (475)
T ss_pred hh
Confidence 53
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=13 Score=32.96 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.++.+.+.|+..+++.+-.. .....+.+.+.++.+. ..+++.++.|..+.+.+..++++|++.+.++
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 3344455678999988765311 1122344444333332 3688888999999999999999999998864
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=80.05 E-value=48 Score=30.37 Aligned_cols=194 Identities=16% Similarity=0.116 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHh-cCcEEEEecCCCCHH----HHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHH
Q psy14485 132 LDNIENMICEVKK-IGLETCLTLGMLNEN----QAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVR 203 (348)
Q Consensus 132 ~~~~~~l~~~i~~-~~~~i~~~~g~l~~e----~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~ 203 (348)
.+.+.+.++.... .+.++.++....+.+ .++.+.++| ++.+.+++-+ ....+ .-.-..+.+...+.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~-g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG-GIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHH
Confidence 4444444443332 344566665434433 345555553 7888888766 32110 0001246777788888888
Q ss_pred Hc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc------cCCCCCC-----CCCCCCH-HHHHHHHH
Q psy14485 204 NV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ------IKGTPLY-----GSSILDP-LEFIRTIA 270 (348)
Q Consensus 204 ~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P------~~gT~l~-----~~~~~~~-~~~~~~~a 270 (348)
+. ++++.+-+ ..+.++..+..+.+.+.+ ++.+.++.-++ ..++|.. ....+.. .-.++.+.
T Consensus 154 ~~~~~pv~vKi----~~~~~~~~~~a~~l~~~G--~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 227 (300)
T TIGR01037 154 DKTDVPVFAKL----SPNVTDITEIAKAAEEAG--ADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVY 227 (300)
T ss_pred HhcCCCEEEEC----CCChhhHHHHHHHHHHcC--CCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHH
Confidence 74 55544432 234567777888888888 78877642211 1111111 1111110 11233333
Q ss_pred HHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc----hHHHHHHHHcCCCchh
Q psy14485 271 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT----NDDSKLLKKLGINTRN 336 (348)
Q Consensus 271 ~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~----~~~~~~i~~~G~~p~~ 336 (348)
..+..++ ..|-..+|-.+ .+.....+.+||+.++.+--++ ..+.-. +++.+++.+.||.-+.
T Consensus 228 ~i~~~~~-ipvi~~GGI~s--~~da~~~l~~GAd~V~igr~~l-~~p~~~~~i~~~l~~~~~~~g~~~~~ 293 (300)
T TIGR01037 228 DVYKMVD-IPIIGVGGITS--FEDALEFLMAGASAVQVGTAVY-YRGFAFKKIIEGLIAFLKAEGFTSIE 293 (300)
T ss_pred HHHhcCC-CCEEEECCCCC--HHHHHHHHHcCCCceeecHHHh-cCchHHHHHHHHHHHHHHHcCCCCHH
Confidence 3343332 22222233222 3445556789999997764332 222111 4668888899987443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 348 | ||||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 3e-89 | ||
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 4e-05 | ||
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 5e-05 | ||
| 3cix_A | 348 | X-ray Structure Of The [fefe]-hydrogenase Maturase | 6e-05 |
| >pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-dependent Radical Enzyme Length = 369 | Back alignment and structure |
|
| >pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
|
| >pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
|
| >pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 | Back alignment and structure |
|---|
Score = 517 bits (1334), Expect = 0.0
Identities = 176/307 (57%), Positives = 232/307 (75%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 30 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 89
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 90 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 149
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
C+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI
Sbjct: 150 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 209
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+C GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 210 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 269
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +
Sbjct: 270 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 329
Query: 329 KLGINTR 335
KLG+N +
Sbjct: 330 KLGLNPQ 336
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-107
Identities = 51/321 (15%), Positives = 115/321 (35%), Gaps = 26/321 (8%)
Query: 29 WKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQS 85
+++ L +L + L+ A + R ++ N + L + C C +C +
Sbjct: 23 LTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYFS-TYCKNQCSFCYYN 81
Query: 86 THYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145
L++E + + K G + D + ++ VK+
Sbjct: 82 CRNEINR---YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEE 138
Query: 146 -GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVR 203
GL ++ G+++ + ++ G ++ +T +LY + + ++ R+N + +
Sbjct: 139 LGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAK 198
Query: 204 NVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 263
G + G + G+ + + ++ P+ V + + +GTPL G L
Sbjct: 199 QQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMTFLPQEGTPLEGFRDKSNL 256
Query: 264 EFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG-------------D 310
++ I+V R+ P I S + + AGAN + D
Sbjct: 257 SELKIISVLRLMFPKRLIPASLDLEGIDG--MVLRLNAGANIVTSILPPDSQLEGVANYD 314
Query: 311 KLLTTDNTKTNDDSKLLKKLG 331
+ L + + L+ +G
Sbjct: 315 RDLEERDRDIKSVVRRLEIMG 335
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 314 bits (807), Expect = e-106
Identities = 67/321 (20%), Positives = 132/321 (41%), Gaps = 25/321 (7%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
L E +++ + FN+ LF+ R+ + +E+ + ++ + C ++C YC
Sbjct: 18 EVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLR-RD 75
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
N + + ++ E ++ A+ A GA + + D+ I +++ E+KK+G+
Sbjct: 76 NKNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMGVA 132
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVGI 207
L+LG + K+ G D Y +T+ P L+ + +ENRLN L ++ +G
Sbjct: 133 VTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGY 192
Query: 208 NICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFI 266
G ++GL ++ D + + L + + V I + TPL D +
Sbjct: 193 ETGAGSMVGLPGQTIDDLVDDLLFLKEHDF--DMVGIGPFIPHPDTPLANEKKGDFTLTL 250
Query: 267 RTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF--------------YGDKL 312
+ +A+ RI +P S I + + + GAN I Y K+
Sbjct: 251 KMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKI 310
Query: 313 LTTDNTKTNDDS--KLLKKLG 331
+ K+++ LG
Sbjct: 311 CVFEKDTACIPCVMKMIELLG 331
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 8e-08
Identities = 64/421 (15%), Positives = 118/421 (28%), Gaps = 142/421 (33%)
Query: 2 SLKIIQSSKESNSI-KKNNAISSSQSLIWKL----DEVINLF-------NLPF------- 42
K I S +E + I +A+S + L W L +E++ F N F
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 43 ---------------NDLLFRAQKVHRKYF-----DANEIELAVLLSIKT---------G 73
D L+ +V KY ++ A LL ++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVL 159
Query: 74 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA-TRFCMGAAW----RELK 128
G G K + + A S + W
Sbjct: 160 GS----G---------------K-----TWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 129 DRD-LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 187
L+ ++ ++ ++ + + +K + + ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTS--------RSDHSSNIK--------LRIHSIQAELRRLL 238
Query: 188 STRDYENRLNTLKNVRNVGI----NICC--------GGII-GLSESRDQRAELIFQLANL 234
++ YEN L L NV+N N+ C + LS + L L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 235 NPYPES---------VPINNL-VQI-KGTPLYGSSI-------LDPLEFIRTIAVARITM 276
P E +L ++ P S I L + + + ++
Sbjct: 299 TP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-- 355
Query: 277 PTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD-----KLLTT--DNTKTNDDSKLLKK 329
T+ I S E E + F L+ +F LL+ + +D ++ K
Sbjct: 356 -TTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 330 L 330
L
Sbjct: 411 L 411
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 51/342 (14%), Positives = 101/342 (29%), Gaps = 104/342 (30%)
Query: 31 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 90
+D + D+L + FD +++ + SI + E+ + S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILS---KEEIDHIIMSKD--- 59
Query: 91 EITATKILSIESVITAAQKAKSDGATRFCMGA----------AWR-ELKDRDLDNIENMI 139
++ T L T K + +F + E + + I
Sbjct: 60 AVSGTLRL----FWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYI 113
Query: 140 CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTL 199
+ + + N+NQ + V + + Y + L L
Sbjct: 114 EQRDR----------LYNDNQVFAKYNV----------SRLQPYLKL------RQALLEL 147
Query: 200 KNVRNVGINICCGGIIGLSES-------RDQRAEL-----IF--QLANLNPYPESV--PI 243
+ +NV I+ G++G ++ + + IF L N N PE+V +
Sbjct: 148 RPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEML 202
Query: 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGA 303
L +DP R+ + I + I+ R L
Sbjct: 203 QKL----------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----------LLKSK 241
Query: 304 NSIFYGDKLLTTDNTKTNDDSKLLKKLGIN------TRNIKI 339
Y + LL N + ++K ++ TR ++
Sbjct: 242 P---YENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQV 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 100.0 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 100.0 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 100.0 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.94 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.94 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.81 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.79 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.78 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.66 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.57 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.51 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.01 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.57 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.47 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.4 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 98.3 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.26 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 98.16 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.84 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 97.84 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 97.63 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 97.61 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.54 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 97.51 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.42 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.37 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.29 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 97.03 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.89 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 96.83 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.79 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 96.76 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 96.6 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 96.52 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 96.42 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 96.4 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.38 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 96.2 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.18 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 96.08 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 96.02 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 96.02 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 95.93 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 95.91 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.91 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.89 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 95.87 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 95.79 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.72 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 95.7 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.36 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.25 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 95.09 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 95.07 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 94.97 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 94.92 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 94.86 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 94.85 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 94.75 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 94.55 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 94.47 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 94.45 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 94.14 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 94.0 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 93.88 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 93.87 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 93.85 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 93.73 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 93.7 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 93.32 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.19 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.14 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 92.98 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 92.95 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 92.88 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 92.66 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.07 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 92.06 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 92.02 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 91.94 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 91.94 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 91.23 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 90.98 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 90.71 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 90.52 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 90.47 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 90.06 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 89.98 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 89.64 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 89.43 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 89.25 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 89.19 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 88.75 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 88.34 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 88.03 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 87.87 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 87.8 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 87.74 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 87.62 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 87.56 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 87.47 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 87.43 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 87.43 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 87.42 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 87.41 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 87.11 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 86.62 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 86.09 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 85.65 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 85.61 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 85.55 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 85.39 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 85.36 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 85.29 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 84.85 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 84.63 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 84.56 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 84.5 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 84.23 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 84.21 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 84.1 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 83.8 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 83.5 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 83.31 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 82.93 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 82.93 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 82.05 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 81.9 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 81.82 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 81.82 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 81.44 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 81.42 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 81.1 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 80.65 | |
| 3o0f_A | 301 | Putative metal-dependent phosphoesterase; structur | 80.61 |
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=383.51 Aligned_cols=315 Identities=56% Similarity=0.983 Sum_probs=287.4
Q ss_pred cCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy14485 25 QSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
...++|.+|+..|++.|+.+|+..|+++++++|.|+.|.++.++++.|++|+++|.||+++..+.....+++.+++++|+
T Consensus 26 ~~~~ls~~e~~~l~~~~~~~L~~~A~~~~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~ 105 (369)
T 1r30_A 26 HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 105 (369)
T ss_dssp -CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHH
T ss_pred ccCCCCHHHHHHHHhccHHHHHHHHHHHHHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHH
Confidence 46789999999999999999999999999998866899999899966999999999999987543333456568999999
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHh
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYG 184 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~ 184 (348)
++++.+.+.|++.|+|+||++.|...+.+++.++++.+++.++++++++|.++++.++.|+++|++++++++||++++|+
T Consensus 106 ~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~~~ 185 (369)
T 1r30_A 106 ESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYG 185 (369)
T ss_dssp HHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHH
T ss_pred HHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHHHH
Confidence 99999888999999998875345556789999999999998889999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHH
Q psy14485 185 DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 264 (348)
Q Consensus 185 ~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~ 264 (348)
.+++++++++++++++.++++|+.+++++|+|++||.+++.++++++++++..+++++++.|+|.|||||++.++++.++
T Consensus 186 ~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~ 265 (369)
T 1r30_A 186 NIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFD 265 (369)
T ss_dssp HHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999744789999999999999999888999999
Q ss_pred HHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhhhh
Q psy14485 265 FIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 265 ~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
.+++++++|.++|+..++++++|+++++..++.++++|||+++.|+++.+.+|++.+++.++++++|+.|++|.-
T Consensus 266 ~~~~~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 266 FIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred HHHHHHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 999999999999998888888899988888999999999999999988899999999999999999999998874
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=382.70 Aligned_cols=309 Identities=18% Similarity=0.310 Sum_probs=271.4
Q ss_pred hhcccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcccc
Q psy14485 21 ISSSQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATK 96 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~ 96 (348)
+++..+++||++|++.|++.+ +.+|+..|+.+|++++ |+.|+++++|++ |++|+++|.||+++... ...+|.
T Consensus 15 ~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~--~~~~~~ 90 (350)
T 3t7v_A 15 DKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYF-GNRVFLNCFIYF-STYCKNQCSFCYYNCRN--EINRYR 90 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEE-ECCCCCCCTTCTTCTTS--CCCCCB
T ss_pred HHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHC-CCEEEEEEeeec-CCCcCCCCCcCCCcCcC--CCCcee
Confidence 445689999999999999863 4789999999988888 899999999999 99999999999998854 445675
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-cHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDR-DLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+++++|+++++.+.+.|++.|+|+|| ++|... +.+++.++++.+++ .++.+++++|.++++.++.|+++|++++.+
T Consensus 91 -ls~eei~~~~~~~~~~G~~~i~l~gG-e~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~aG~~~i~i 168 (350)
T 3t7v_A 91 -LTMEEIKETCKTLKGAGFHMVDLTMG-EDPYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLAL 168 (350)
T ss_dssp -CCHHHHHHHHHHHTTSCCSEEEEEEC-CCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHHTTEEEEEC
T ss_pred -CCHHHHHHHHHHHHHCCCCEEEEeeC-CCCccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 89999999999998999999999887 344322 46889999999986 478889999999999999999999999999
Q ss_pred cCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 175 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 175 g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
++|| ++++++.+++++++++++++++.++++|+.+++++|+|+|||.+++.++++++++++ ++++++++|+|.||||
T Consensus 169 ~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~--~~~v~~~~f~p~~gT~ 246 (350)
T 3t7v_A 169 YQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTND--PDMVRVMTFLPQEGTP 246 (350)
T ss_dssp CCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTC--CSEEEEEECCCCTTST
T ss_pred eeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCC--CCEEEecceeeCCCCc
Confidence 9999 799999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeee---CCe----eccCC------CCCc
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY---GDK----LLTTD------NTKT 320 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~---~~~----~~~~~------g~~~ 320 (348)
+++.++++.++++++++++|+++|+.+|+++| ...+.+..+.+|.+|||+++. .+. +...+ ..+.
T Consensus 247 l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~--~~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~ 324 (350)
T 3t7v_A 247 LEGFRDKSNLSELKIISVLRLMFPKRLIPASL--DLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDI 324 (350)
T ss_dssp TTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEH--HHHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCH
T ss_pred CccCCCCChHHHHHHHHHHHHhCCCcCccccc--cccChhHHHHHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCH
Confidence 99988899999999999999999999898875 555567788999999999842 221 11111 2345
Q ss_pred hHHHHHHHHcCCCchhhhh
Q psy14485 321 NDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 321 ~~~~~~i~~~G~~p~~~~~ 339 (348)
+++.++|+++||+|++|+-
T Consensus 325 ~~~~~~i~~~G~~~~~r~~ 343 (350)
T 3t7v_A 325 KSVVRRLEIMGMKPARQAD 343 (350)
T ss_dssp HHHHHHHHHHTCEECCHHH
T ss_pred HHHHHHHHHcCCccccHHH
Confidence 8999999999999999974
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=349.51 Aligned_cols=309 Identities=20% Similarity=0.324 Sum_probs=272.5
Q ss_pred hhcccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcccc
Q psy14485 21 ISSSQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATK 96 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~ 96 (348)
+++.. +.||++|++.|++.+ ..+|+..|+.+++++| |+.++++++|++ |++|+++|.||+++... ....+|.
T Consensus 8 ~k~~~-~~l~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~-~~~~~~~ 83 (348)
T 3iix_A 8 EKLER-REFTREVLKEALSINDRGFNEALFKLADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYCGLRRDN-KNLKRYR 83 (348)
T ss_dssp HHHHT-TCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CSEEEEEEEEEE-ECCCSCCCTTCTTCTTC-CSSCCCB
T ss_pred HHHHh-CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc-CCEEEEEEEeEe-cCCcCCcCccCCCCCCC-CCcCcee
Confidence 34455 899999999999863 4678999999988888 899999999999 99999999999988753 3335665
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+++++++++++.+.+.|++.|+|+|| ++| ....+++.++++.+++.++.+++++|.++++.++.|+++|++++.+++
T Consensus 84 -ls~eei~~~i~~~~~~g~~~i~~~gG-e~p-~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~~v~i~l 160 (348)
T 3iix_A 84 -MTPEEIVERARLAVQFGAKTIVLQSG-EDP-YXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRH 160 (348)
T ss_dssp -CCHHHHHHHHHHHHHTTCSEEEEEES-CCG-GGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCCEEECCC
T ss_pred -CCHHHHHHHHHHHHHCCCCEEEEEeC-CCC-CccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCCEEeeee
Confidence 89999999999999999999999988 433 445689999999999888999999999999999999999999999999
Q ss_pred CC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 177 DT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 177 et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
|| ++++++.+++++++++++++++.++++|+.+++++|+|+ +||.+++.+++.++++++ ++.+++++|+|.||||+
T Consensus 161 et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~~~p~~gt~l 238 (348)
T 3iix_A 161 ETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHPDTPL 238 (348)
T ss_dssp BCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT--CSEECCEECCCCTTSTT
T ss_pred eeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeeeeecCCCCCc
Confidence 99 799999999999999999999999999999999999999 999999999999999999 89999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC--------------CeeccCCCCC-
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG--------------DKLLTTDNTK- 319 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~--------------~~~~~~~g~~- 319 (348)
++.++++.++.+++++++|+++|+.+|+++++|..+++..+..++.+|||+++.. ++..+.++..
T Consensus 239 ~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (348)
T 3iix_A 239 ANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTA 318 (348)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTSCTTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCCCchh
Confidence 9999999999999999999999999999877788888889999999999999721 1122222222
Q ss_pred -chHHHHHHHHcCCCchhhh
Q psy14485 320 -TNDDSKLLKKLGINTRNIK 338 (348)
Q Consensus 320 -~~~~~~~i~~~G~~p~~~~ 338 (348)
.++..++|+++||+|+..+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~ 338 (348)
T 3iix_A 319 CIPCVMKMIELLGRKPGRDW 338 (348)
T ss_dssp HHHHHHHHHHHTTCEECSSC
T ss_pred hHHHHHHHHHHcCCEeCCCC
Confidence 3678999999999998763
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-27 Score=229.33 Aligned_cols=239 Identities=13% Similarity=0.142 Sum_probs=185.3
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC----CCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy14485 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
.|.+ ++|+.+|.||+++...... .......++.+.++++...+. ++..|+|+|| +|+..+.+.+.++++.+
T Consensus 56 YihI--pfC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGG--tpt~l~~~~l~~ll~~i 130 (457)
T 1olt_A 56 YVHI--PFCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGG--TPTYLNKAQISRLMKLL 130 (457)
T ss_dssp EEEE--CEESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEES--CGGGSCHHHHHHHHHHH
T ss_pred EEEc--CCCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCC--CcccCCHHHHHHHHHHH
Confidence 3555 6799999999998742111 112223467888887766543 4677899887 35555778999999999
Q ss_pred Hhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeE
Q psy14485 143 KKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGG 213 (348)
Q Consensus 143 ~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~ 213 (348)
++. .+.+.++++.++++.++.|+++|+++|++|+|| ++++++.++|+|++++++++++.++++|+. +++++
T Consensus 131 ~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dl 210 (457)
T 1olt_A 131 RENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDL 210 (457)
T ss_dssp HHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 872 344556788999999999999999999999999 799999999999999999999999999997 99999
Q ss_pred eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCc---eecc
Q psy14485 214 IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-----SSILDPLEFIRTIAVARITMPTSR---IRMS 284 (348)
Q Consensus 214 i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-----~~~~~~~~~~~~~a~~R~~lp~~~---i~~s 284 (348)
|+|+ |||.+++.++++.+.+++ +++++++.|.|.|||+... ...++.++..+++..+...+.... +.++
T Consensus 211 I~GlPget~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~yeis 288 (457)
T 1olt_A 211 IYGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMD 288 (457)
T ss_dssp EESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETT
T ss_pred EcCCCCCCHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 9999 999999999999999999 9999999999999998653 235788888999888876665432 2221
Q ss_pred ----ccc-------------cccc----hhhHHHHHHhCcceeeeCCee
Q psy14485 285 ----AGR-------------KEMG----ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 ----~g~-------------~~l~----~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++. ++++ ....+.++++||.+.+.+.++
T Consensus 289 ~fa~~~~~~~~~~~~~~~~r~~~~Y~~~~~~~~lG~G~gA~s~~~~~~~ 337 (457)
T 1olt_A 289 HFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYA 337 (457)
T ss_dssp EEECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETTEEE
T ss_pred hhcCCCchhhhHHhhcchhhcccccccCCCCeEEEEccceeecCCCCEE
Confidence 111 1111 123467899999998765443
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=210.39 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=144.2
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---cHHHHHHHHHHH
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICEV 142 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~~~l~~~i 142 (348)
+.+.+ ++||+++|.||.++... + +++.+++++|+++++.+.+.|+++|.|+|+....... ..+.+.++++.+
T Consensus 6 ~~v~i-s~GC~~~C~fC~~~~~~--g--~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 6 AYVKI-SDGCDRGCTFCSIPSFK--G--SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp EEEES-BCCC---------------C--CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEE-CCCCCCcCccCCccccC--C--CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHH
Confidence 45677 99999999999988643 1 2345899999999999988999999998752211111 124688888888
Q ss_pred Hhc-CcE-EE---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q psy14485 143 KKI-GLE-TC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 212 (348)
Q Consensus 143 ~~~-~~~-i~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~~ 212 (348)
++. ++. +. +++..++++.++.|+++| ++++.+++|| ++++++.++++++.++++++++.+++ .|+.++++
T Consensus 81 ~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~ 160 (304)
T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304)
T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 875 553 32 457789999999999999 9999999999 89999999999999999999999999 78999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHH
Q psy14485 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIA 270 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a 270 (348)
+|+|+ |||.+++.++++++.+++ ++.+.+++|.|.||||++..+ .++.+...+.+.
T Consensus 161 ~IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~ 218 (304)
T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQE 218 (304)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHH
Confidence 99999 999999999999999999 899999999999999998865 566655444433
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=159.99 Aligned_cols=206 Identities=17% Similarity=0.293 Sum_probs=158.6
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCC---CCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccH
Q psy14485 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYN---TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL 132 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~---~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~ 132 (348)
.| |..+... .+++ |++|+.+|.||.....+. ........++.+++.+.++.+.+.|+..|.|+|| + |...
T Consensus 8 ~~-gr~~~~l-~i~~-T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGG-E-Pll~-- 80 (340)
T 1tv8_A 8 KL-GRPIRDL-RLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGG-E-PLMR-- 80 (340)
T ss_dssp TT-SCBCCEE-EEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESS-C-GGGS--
T ss_pred CC-CCccCeE-EEEe-CCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCC-C-ccch--
Confidence 45 6666433 4677 999999999998765211 0112234589999999999988899999999987 4 3221
Q ss_pred HHHHHHHHHHHhcCc--EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCC
Q psy14485 133 DNIENMICEVKKIGL--ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGI 207 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~--~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~ 207 (348)
..+.++++.+++.+. .+.+ +.|.+..+.++.|+++|+++|.+++++ +++.++.+++.. +++++++.++.++++|+
T Consensus 81 ~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~ 160 (340)
T 1tv8_A 81 RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL 160 (340)
T ss_dssp TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 246788888887633 4443 356665679999999999999999999 799999998877 99999999999999999
Q ss_pred eeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CCCCCHHHHHHHHHH
Q psy14485 208 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SSILDPLEFIRTIAV 271 (348)
Q Consensus 208 ~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~~~~~~~~~~~~a~ 271 (348)
.+.+.+++.-|++.+++.+.++++.+++ ++ +.+..++|.++++.+. ....+.++.++.+..
T Consensus 161 ~v~i~~vv~~g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~ 222 (340)
T 1tv8_A 161 NVKVNVVIQKGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQ 222 (340)
T ss_dssp EEEEEEEECTTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHHh
Confidence 8888877744889999999999999998 65 6777889998887543 345677777776653
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-18 Score=149.39 Aligned_cols=194 Identities=15% Similarity=0.223 Sum_probs=149.5
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
|++|+.+|.||..+..+... ..+.++++++++.++...+. ++..|.|+|| + | ....+.+.++++.+++.++.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GG-E-P-~l~~~~l~~l~~~~~~~~~~ 100 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDTH--GGKEVTVEDLMKEVVTYRHFMNASGGGVTASGG-E-A-ILQAEFVRDWFRACKKEGIH 100 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCTT--CSEEECHHHHHHHHGGGHHHHTSTTCEEEEEES-C-G-GGGHHHHHHHHHHHHTTTCC
T ss_pred eCCCCCCCCCCCCchhcccc--cCccCCHHHHHHHHHHhhhhhcCCCCeEEEECC-C-c-CCCHHHHHHHHHHHHHcCCc
Confidence 78999999999976533221 22347899999998876553 4788999987 4 3 23456688999999987776
Q ss_pred EEEe-cCCC--CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE--eeecCCCHH
Q psy14485 149 TCLT-LGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRD 222 (348)
Q Consensus 149 i~~~-~g~l--~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~--i~Glget~e 222 (348)
+.+. .|.+ +.+.++.|.++ ++.+.+++++ +++.++.+++. ++++++++++.++++|+.+...+ +.|..++.+
T Consensus 101 i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~ 178 (245)
T 3c8f_A 101 TCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDD 178 (245)
T ss_dssp EEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHH
T ss_pred EEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCCCCCHH
Confidence 6553 4666 78899999998 8999999999 79999998764 46999999999999999766554 334457889
Q ss_pred HHHHHHHHHHhcCCCC-CeeecccccccCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q psy14485 223 QRAELIFQLANLNPYP-ESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~-~~i~~~~l~P~~gT---------~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
++.+.++++.+++ + ..+.+.++.|.+++ ++.+.++++.+++.+++..++.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
T 3c8f_A 179 SAHRLGEFTRDMG--NVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 238 (245)
T ss_dssp HHHHHHHHHHHHC--CEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--CCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHh
Confidence 9999999999998 5 77888888886654 3344567888888888777764
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=157.89 Aligned_cols=203 Identities=12% Similarity=0.094 Sum_probs=154.1
Q ss_pred CCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHh--------------------CCCCEEEEeccCCCCCccc
Q psy14485 73 GGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKS--------------------DGATRFCMGAAWRELKDRD 131 (348)
Q Consensus 73 ~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~--------------------~G~~~i~l~gg~~~~~~~~ 131 (348)
++|+.+|.||..+..... .....+.++++++++++..... ..++.|.|+|||+ |...
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGE-Pll~- 156 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGE-PMLY- 156 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSC-GGGS-
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCc-ccch-
Confidence 699999999997643211 0012334789999987765432 1256788974445 3222
Q ss_pred HHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH
Q psy14485 132 LDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN 204 (348)
Q Consensus 132 ~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~ 204 (348)
..+.++++.+++.++.+.+. .|.+ ++.++.|+++| ++.+.+++++ +++.++.+++ ..++++++++++.+++
T Consensus 157 -~~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~ 234 (342)
T 2yx0_A 157 -PYMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRD 234 (342)
T ss_dssp -TTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHh
Confidence 26888999998888887764 4555 88899999998 9999999999 7999999886 4579999999999999
Q ss_pred cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCce
Q psy14485 205 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG--TPLYGSSILDPLEFIRTIAVARITMPTSRI 281 (348)
Q Consensus 205 ~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g--T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i 281 (348)
.|+.+...+++..|++.+++.+.++++.+++ ++.+.+.+|.|.++ +++....+++.+++.+++..++..+|+..|
T Consensus 235 ~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~~I 311 (342)
T 2yx0_A 235 LPTRTVVRLTLVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGYHI 311 (342)
T ss_dssp CSSEEEEEEEECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCCce
Confidence 9999888877755888777888899999998 89988878877654 445445578899999999999988887555
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=143.41 Aligned_cols=204 Identities=13% Similarity=0.131 Sum_probs=127.9
Q ss_pred CCceEEEEEEEeec-CCCCCCCCcCCCCCCCCCC-----CccccccCHHHHHHHHHHHHh--------------------
Q psy14485 59 ANEIELAVLLSIKT-GGCTEDCGYCPQSTHYNTE-----ITATKILSIESVITAAQKAKS-------------------- 112 (348)
Q Consensus 59 g~~v~~~~~i~i~t-~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~-------------------- 112 (348)
|.....+..+.+ | .+|+.+|.||..+.....+ ....+.++++++++++.....
T Consensus 46 ~~~~~~~l~i~~-t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~ 124 (311)
T 2z2u_A 46 GIETHRCIQCTP-SVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKE 124 (311)
T ss_dssp CCCGGGEEEEES-CSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHH
T ss_pred eecCCCeEEecc-ChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhh
Confidence 433333445666 7 7999999999865321110 012345789999887654421
Q ss_pred -CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC
Q psy14485 113 -DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST 189 (348)
Q Consensus 113 -~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~ 189 (348)
..++.|.|++||+ |... +.+.++++.+++.++.+.+. .|.+ ++.++.| |.+.+.+++++ +++.++.+++.
T Consensus 125 ~~~~~~i~~s~gGE-Pll~--~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~ 197 (311)
T 2z2u_A 125 ALEPKHVAISLSGE-PTLY--PYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGG 197 (311)
T ss_dssp HTSCCEEEECSSSC-GGGS--TTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CC
T ss_pred ccCCCEEEEeCCcC-ccch--hhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCC
Confidence 1246788884445 3222 35888999998888877664 4555 5555555 89999999999 79999999876
Q ss_pred --CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC--CCCCCCCHHHH
Q psy14485 190 --RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL--YGSSILDPLEF 265 (348)
Q Consensus 190 --~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l--~~~~~~~~~~~ 265 (348)
.++++++++++.+++.| .+...+++..|.+. ++.+.++++.+++ ++.+.+.+|+|.++++. ....+++.++.
T Consensus 198 ~~~~~~~v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~ 273 (311)
T 2z2u_A 198 KKEYWESILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEI 273 (311)
T ss_dssp CHHHHHHHHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHH
T ss_pred ccchHHHHHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHH
Confidence 68999999999999999 66655444335555 7788888888898 89999999999988873 22357888988
Q ss_pred HHHHHHHHH
Q psy14485 266 IRTIAVARI 274 (348)
Q Consensus 266 ~~~~a~~R~ 274 (348)
.+....++.
T Consensus 274 ~~~~~~l~~ 282 (311)
T 2z2u_A 274 LKLAKMLDE 282 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888877764
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=129.99 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=146.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh----------CCCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy14485 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----------DGATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
+.+|+.+|.||..... . ..+.++++||++++..... .++..|.|.|+|+ | ....+.+.++++.
T Consensus 122 q~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGE-P-Lln~d~v~~~i~~ 194 (404)
T 3rfa_A 122 QVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGE-P-LLNLNNVVPAMEI 194 (404)
T ss_dssp EEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSC-G-GGCHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCC-c-ccCHHHHHHHHHH
Confidence 5789999999986542 1 1235899999998876543 2478899987656 3 3567889999999
Q ss_pred HHh-cCc-----EEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHH-HHHHcCC--
Q psy14485 142 VKK-IGL-----ETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGI-- 207 (348)
Q Consensus 142 i~~-~~~-----~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~-~~~~~G~-- 207 (348)
+++ .|+ .++++ .|.+ +.++.|.+.+...+.+++.+ +++.++.+.+ ..+.++++++++ .+.+.|.
T Consensus 195 lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 195 MLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp HHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred HHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 998 477 67764 5655 45788888876677899999 7999998875 568999999995 4556676
Q ss_pred -eee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy14485 208 -NIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS 284 (348)
Q Consensus 208 -~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s 284 (348)
.+. ..+|-|+.++.+++.+.+++++.++ ..+.+.+|.|.++++ .++++.+++.+...+++..--...|+-+
T Consensus 273 ~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~---~~~ps~e~i~~f~~iL~~~Gi~vtiR~~ 346 (404)
T 3rfa_A 273 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAP---YGRSSNSRIDRFSKVLMSYGFTTIVRKT 346 (404)
T ss_dssp TCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCC---CCBCCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred ccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCC---CCCCCHHHHHHHHHHHHHcCCcEEEcCC
Confidence 554 4555677889999999999999885 467788888887765 4677888888888877764333345444
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-13 Score=128.43 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=136.9
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy14485 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
..+.+ |++|+.+|.||....... . ....++.+++.+.++.+.+ .|+..|.|+|| + |.....+.+.++++.+++
T Consensus 117 v~l~v-T~~Cnl~C~yC~~~~~~~-~--~~~~ls~eei~~~i~~i~~~~gi~~V~ltGG-E-Pll~~d~~L~~il~~l~~ 190 (416)
T 2a5h_A 117 VLLLI-TDMCSMYCRHCTRRRFAG-Q--SDDSMPMERIDKAIDYIRNTPQVRDVLLSGG-D-ALLVSDETLEYIIAKLRE 190 (416)
T ss_dssp EEEEE-ESCCSSCCTTCTTTTTTT-S--SSSBCCHHHHHHHHHHHHTCTTCCEEEEEES-C-TTSSCHHHHHHHHHHHHT
T ss_pred EEEec-CCCccccCcCCCCcccCC-C--ccCCCCHHHHHHHHHHHHhcCCCcEEEEECC-C-CCCCCHHHHHHHHHHHHh
Confidence 35677 999999999997664321 1 2224789999999988887 68999999987 3 333344468888888887
Q ss_pred c-Cc-EEEEe-c------CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE-
Q psy14485 145 I-GL-ETCLT-L------GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG- 213 (348)
Q Consensus 145 ~-~~-~i~~~-~------g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~- 213 (348)
. ++ .+.+. . ..++++.++.|+++ +.+.+++++ .+ +.+. ++++++++.++++|+.+....
T Consensus 191 ~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~i~~v 260 (416)
T 2a5h_A 191 IPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLGNQSV 260 (416)
T ss_dssp STTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEEEEEE
Confidence 5 33 33332 2 25789999999999 788888888 45 2332 899999999999999765543
Q ss_pred -eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q psy14485 214 -IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 214 -i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
+-|+.++.+++.+.++++.+++ +....++.+.+.+||+.+. .+..+..+++..++..+++
T Consensus 261 ll~GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~~~~G 321 (416)
T 2a5h_A 261 LLRGVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRGHTSG 321 (416)
T ss_dssp CCTTTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBTTBCG
T ss_pred EECCCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHHHCCC
Confidence 3377888889999999999998 6555455444467887543 4556666666666654443
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=86.16 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=113.1
Q ss_pred CEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHH
Q psy14485 116 TRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYE 193 (348)
Q Consensus 116 ~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~ 193 (348)
..|.|+|| + | ....+.+.++++.+++.++.+.+. .|.++++.++.|.++ ++.+.+++.+ +++.++.++. .+++
T Consensus 5 ~~v~~tGG-E-P-ll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g-~~~~ 79 (182)
T 3can_A 5 GGVTFCGG-E-P-LLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD-VPNE 79 (182)
T ss_dssp CCEEECSS-T-G-GGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-SCSH
T ss_pred CEEEEEcc-c-c-cCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-CCHH
Confidence 45788887 4 3 234455579999999888777654 678889999999988 8999999999 7999988875 3469
Q ss_pred HHHHHHHHHHHcCCeeeEe--EeeecCCCHHHHHHHHHHHHhc-CCCC-CeeecccccccCCCC---------CCCCCCC
Q psy14485 194 NRLNTLKNVRNVGINICCG--GIIGLSESRDQRAELIFQLANL-NPYP-ESVPINNLVQIKGTP---------LYGSSIL 260 (348)
Q Consensus 194 ~~~~~i~~~~~~G~~i~~~--~i~Glget~e~~~~~l~~l~~l-~~~~-~~i~~~~l~P~~gT~---------l~~~~~~ 260 (348)
.+++.++.+++.|+.+... ++-|+.++.+++.+.++++.++ + + ..+.+.++.|..... +.+.+++
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~ 157 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQ 157 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------CCB
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCCCC
Confidence 9999999999999866544 4445568899999999999999 7 7 788899999876543 3334556
Q ss_pred CHHH--HHHHHHHHHHH
Q psy14485 261 DPLE--FIRTIAVARIT 275 (348)
Q Consensus 261 ~~~~--~~~~~a~~R~~ 275 (348)
+.++ +.++...++..
T Consensus 158 ~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 158 TPSEEVQQQCIQILTDY 174 (182)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 6666 77777777653
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-06 Score=76.25 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=147.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
++.++.++.++.+.+.|++.|-++++. +|.. .......++++.+++. +..+.+-. .+.+.++...++|++.+.+.
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~-~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i~ 100 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFV-SPKWVPQMGDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVIF 100 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECC-CTTTCGGGTTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCc-CcccccccCCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEEE
Confidence 789999999999999999998776642 2210 1112234555555543 44433222 46788999999999999987
Q ss_pred CCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeec-C-----CCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 176 LDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGL-S-----ESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 176 ~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-g-----et~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.-+++. ..+.+++. ..++...+.++.+++.|+.+..++++-+ . .+++.+.+.++.+.+++ ++.+.+.
T Consensus 101 ~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~-- 176 (298)
T 2cw6_A 101 GAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG--CYEISLG-- 176 (298)
T ss_dssp EESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT--CSEEEEE--
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEec--
Confidence 665543 33455543 3667888889999999999988877544 1 36889999999999998 7776554
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---ee--CC-eecc--C
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FY--GD-KLLT--T 315 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~--~~-~~~~--~ 315 (348)
.| ....+|.++.+++...|..+|+..+.+- -|+ ++ .-....++.+||+.+ +. |+ -+.. +
T Consensus 177 ----DT----~G~~~P~~~~~lv~~l~~~~~~~~i~~H--~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~a 246 (298)
T 2cw6_A 177 ----DT----IGVGTPGIMKDMLSAVMQEVPLAALAVH--CHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGAS 246 (298)
T ss_dssp ----ET----TSCCCHHHHHHHHHHHHHHSCGGGEEEE--EBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSC
T ss_pred ----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEE--ECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCc
Confidence 23 2346889999999999988886433321 122 22 223466899999977 11 22 1111 1
Q ss_pred CCCCchHHHHHHHHcCCCc
Q psy14485 316 DNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 316 ~g~~~~~~~~~i~~~G~~p 334 (348)
.+...+++..+++..|+.+
T Consensus 247 GN~~~E~lv~~l~~~g~~~ 265 (298)
T 2cw6_A 247 GNLATEDLVYMLEGLGIHT 265 (298)
T ss_dssp CBCBHHHHHHHHHHHTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 2233478888999999874
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=86.23 Aligned_cols=161 Identities=14% Similarity=0.233 Sum_probs=97.5
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHH-HHhCCCC--EEEEeccCCCCCcccHHH----HHHHHH
Q psy14485 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQK-AKSDGAT--RFCMGAAWRELKDRDLDN----IENMIC 140 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~-~~~~G~~--~i~l~gg~~~~~~~~~~~----~~~l~~ 140 (348)
++. ..||++.|.||.....++....-....+.+++++.++. +.+.+.. .|.+++ .++|. +.+. ..++++
T Consensus 111 ln~-y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~-~TDpy--p~E~~~~ltr~~le 186 (368)
T 4fhd_A 111 IPL-ATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAAC-TSDIV--GIDHLTHSLKKAIE 186 (368)
T ss_dssp CCS-EEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCS-SBCHH--HHHTTTCHHHHHHH
T ss_pred eCC-ccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEc-CCCcc--hhhHHHhHHHHHHH
Confidence 555 89999999999966544321101113678999988764 3333433 343333 23432 3443 445556
Q ss_pred HHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-
Q psy14485 141 EVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGL- 217 (348)
Q Consensus 141 ~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl- 217 (348)
.+.+. +..+.+......-+.+..+...|...|.+++-+ +++.+.+-++ -+.++++++++.++++|+++.+.+.-=+
T Consensus 187 ~l~~~~~~~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaPIiP 265 (368)
T 4fhd_A 187 FIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYR 265 (368)
T ss_dssp HHHHCSSEEEEEEESCCCCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEEECC
T ss_pred HHHhCCCceEEEEeCCcCHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeCcCC
Confidence 66654 445554433222233444545565666666644 6777777764 5899999999999999999876654444
Q ss_pred CCCH-HHHHHHHHHHHh
Q psy14485 218 SESR-DQRAELIFQLAN 233 (348)
Q Consensus 218 get~-e~~~~~l~~l~~ 233 (348)
+++. ++..+.++.+.+
T Consensus 266 ~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 266 HEGWERGYFELFQELAR 282 (368)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 5544 566677766555
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-05 Score=70.89 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=144.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc-HHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-LDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~-~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
++.++.++.++.+.+.|+..|-+++.. .+...+ .....++++.+++. ++.+.+-. .+.+.++...++|++.|.+.
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~-~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~ 99 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFV-SPKWVPQLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAVF 99 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECS-CTTTCGGGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCc-CccccccccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEEE
Confidence 789999999999999999998776532 222111 12345666766654 66665443 56889999999999999886
Q ss_pred CCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe--eec----CCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 176 LDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGI--IGL----SESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 176 ~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i--~Gl----get~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+-+++...+ .++++ .+.+...++++.+++.|+.+...+. +|. -.+++.+.+.++.+.+.+ ++.+.+.-
T Consensus 100 ~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~D- 176 (295)
T 1ydn_A 100 ISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG--CHEVSLGD- 176 (295)
T ss_dssp EESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT--CSEEEEEE-
T ss_pred EecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEecC-
Confidence 655543332 23322 2456666778999999998875554 443 247888999999999998 88877652
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceee---eC--C-eecc--C
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIF---YG--D-KLLT--T 315 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~~--~-~~~~--~ 315 (348)
| ....+|.+..+++...+..+|...+.+-. |+ +.......++.+||+.+- .| + -+.. +
T Consensus 177 -----t----~G~~~P~~~~~lv~~l~~~~~~~~l~~H~--Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~ 245 (295)
T 1ydn_A 177 -----T----IGRGTPDTVAAMLDAVLAIAPAHSLAGHY--HDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAK 245 (295)
T ss_dssp -----T----TSCCCHHHHHHHHHHHHTTSCGGGEEEEE--BCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSC
T ss_pred -----C----CCCcCHHHHHHHHHHHHHhCCCCeEEEEE--CCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCc
Confidence 1 12357889999999888877742222211 21 223345678999999882 12 1 1111 1
Q ss_pred CCCCchHHHHHHHHcCCCc
Q psy14485 316 DNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 316 ~g~~~~~~~~~i~~~G~~p 334 (348)
.+...+++..+++..|+.+
T Consensus 246 GN~~~e~lv~~l~~~g~~~ 264 (295)
T 1ydn_A 246 GNVDTVAVVEMLHEMGFET 264 (295)
T ss_dssp CBCBHHHHHHHHHHTTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 2233578888899999874
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0001 Score=66.92 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=144.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|+..|-.+++ -++.. .......++++.+.+ .+..+.+.. .+.+.++...++|++.|.+
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v~i 102 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSF-VSPKWVPQMAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEVAV 102 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEEC-SCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCC-cCccccccccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEEEE
Confidence 378999999999999999999877653 12211 111223345555543 355665444 4788999999999999987
Q ss_pred cCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC------CCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 175 NLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg------et~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
..-+++- ..+.++.+ .+.+...+.++.+++.|+.+...+.+-++ -+++.+.+.++.+.+.+ ++.+.+.
T Consensus 103 ~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~- 179 (302)
T 2ftp_A 103 FAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG--CYEVSLG- 179 (302)
T ss_dssp EEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT--CSEEEEE-
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEEe-
Confidence 6655543 33445433 25566778889999999988766655332 36788889999899998 8876655
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eecc--
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLLT-- 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~~-- 314 (348)
.|- ...+|.+..+++...+..+|+..+.+-. |+ +.......++.+||+.+ +. |+ -+..
T Consensus 180 -----DT~----G~~~P~~~~~lv~~l~~~~~~~~l~~H~--Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr 248 (302)
T 2ftp_A 180 -----DTI----GVGTAGATRRLIEAVASEVPRERLAGHF--HDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGA 248 (302)
T ss_dssp -----ESS----SCCCHHHHHHHHHHHTTTSCGGGEEEEE--BCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTC
T ss_pred -----CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEe--CCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCC
Confidence 221 1257888888888888777753332211 21 22345667899999988 22 22 1111
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+.+
T Consensus 249 ~GN~~~E~lv~~l~~~g~~~ 268 (302)
T 2ftp_A 249 TGNVASEDVLYLLNGLEIHT 268 (302)
T ss_dssp BCBCBHHHHHHHHHHTTCBC
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 12333578888999999874
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00012 Score=66.62 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=144.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++++ -+|.. .......++++.+++ .+..+.+-. .+.+.++...++|++.+.+
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~-~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v~i 100 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSF-VHPKWIPALRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEACV 100 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEEC-SCTTTCGGGTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCC-cCcccccccCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEEEE
Confidence 378999999999999999999987654 22211 111122344555543 245544322 3577899999999999998
Q ss_pred cCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC------CCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 175 NLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg------et~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
..-+++- ....+++. ...+...+.++.+++.|+.+...+++-++ -+++.+.+.++.+.+++ ++.+.+.
T Consensus 101 ~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~- 177 (307)
T 1ydo_A 101 FMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG--ISELSLG- 177 (307)
T ss_dssp EEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT--CSCEEEE-
T ss_pred EeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEEc-
Confidence 7755543 23344432 24566688899999999998877766542 36788999999999998 7765433
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eec--c
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLL--T 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~--~ 314 (348)
.| ....+|.++.+++...|..+|+..+.+-. || +..-....++.+||+.+ +. |+ -+. .
T Consensus 178 -----DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~--Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~gr 246 (307)
T 1ydo_A 178 -----DT----IGAANPAQVETVLEALLARFPANQIALHF--HDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGS 246 (307)
T ss_dssp -----CS----SCCCCHHHHHHHHHHHHTTSCGGGEEEEC--BGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEE
T ss_pred -----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEE--CCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCC
Confidence 33 13467899999999998888754333211 22 22334567899999988 22 22 000 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+.+
T Consensus 247 aGN~~~E~lv~~L~~~g~~t 266 (307)
T 1ydo_A 247 SGNAATEDIVYMLEQMDIKT 266 (307)
T ss_dssp ECBCBHHHHHHHHHHTTCBC
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 22344578888999999874
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00019 Score=66.17 Aligned_cols=216 Identities=14% Similarity=0.135 Sum_probs=142.5
Q ss_pred cCHHHHHHHHH-HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQ-KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~-~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
++.++.++.++ .+.+.|+..|-++++..+ +.+.+.+..+.+.... .+..+.+-.- ....++...++|++.+
T Consensus 38 ~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~--~~~~i~~a~~~g~~~v 113 (337)
T 3ble_A 38 FSTSEKLNIAKFLLQKLNVDRVEIASARVS--KGELETVQKIMEWAATEQLTERIEILGFVD--GNKTVDWIKDSGAKVL 113 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEETTSC--TTHHHHHHHHHHHHHHTTCGGGEEEEEESS--TTHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--hhHHHHHHHHHhhhhhhccCCCCeEEEEcc--chhhHHHHHHCCCCEE
Confidence 78999999999 999999999987665322 2345555555543211 1334432111 1227999999999999
Q ss_pred eccCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEee---ecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 173 NHNLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGII---GLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 173 ~~g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~---Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.+..-+++. ....++.. ...+...+.++.+++.|+.+..++.. +.-.+++.+.+.++.+.+++ ++.|.+
T Consensus 114 ~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l--- 188 (337)
T 3ble_A 114 NLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEH--IERIFL--- 188 (337)
T ss_dssp EEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSC--CSEEEE---
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcC--CCEEEE---
Confidence 987766643 33445443 25567778889999999998877665 43456788888999999998 766543
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceee---e--CCeeccCCCC
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--GDKLLTTDNT 318 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~~~~~~~~g~ 318 (348)
+.| ....+|.+..+++...|..+|+..|.+-. |+ +..-....|+.+||+.+- . |+ .+.+.
T Consensus 189 ---~DT----~G~~~P~~v~~lv~~l~~~~p~~~i~~H~--Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~---~aGN~ 256 (337)
T 3ble_A 189 ---PDT----LGVLSPEETFQGVDSLIQKYPDIHFEFHG--HNDYDLSVANSLQAIRAGVKGLHASINGLGE---RAGNT 256 (337)
T ss_dssp ---ECT----TCCCCHHHHHHHHHHHHHHCTTSCEEEEC--BCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TTCBC
T ss_pred ---ecC----CCCcCHHHHHHHHHHHHHhcCCCeEEEEe--cCCcchHHHHHHHHHHhCCCEEEEecccccc---cccch
Confidence 233 23467899999999999888864443321 22 223345668999999982 2 22 22334
Q ss_pred CchHHHHHHHHc-CCCc
Q psy14485 319 KTNDDSKLLKKL-GINT 334 (348)
Q Consensus 319 ~~~~~~~~i~~~-G~~p 334 (348)
..+++..+++.. |+.+
T Consensus 257 ~~E~lv~~L~~~~g~~t 273 (337)
T 3ble_A 257 PLEALVTTIHDKSNSKT 273 (337)
T ss_dssp BHHHHHHHHHHHSSCCC
T ss_pred hHHHHHHHHHHhcCCCC
Confidence 457888888887 8763
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0017 Score=58.50 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=134.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHH----HHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYR----LKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~----Lk~aG~~~i 172 (348)
.++.++.++.++.+.+.|++.|-.+... ..+.+.+.+..+.+.+ .+..+.+-.- -.++.++. ++++|+++|
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~--~~~~d~e~v~~i~~~~--~~~~i~~l~~-~~~~di~~a~~~~~~ag~~~v 97 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPI--SSPGDFECVKAIAKAI--KHCSVTGLAR-CVEGDIDRAEEALKDAVSPQI 97 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGG--GCHHHHHHHHHHHHHC--CSSEEEEEEE-SSHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC--CCccHHHHHHHHHHhc--CCCEEEEEec-CCHHHHHHHHHHHhhcCCCEE
Confidence 3789999999999999999998775431 1122334444433322 2444432111 12333444 444799998
Q ss_pred eccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+.+-+++-. ...++.. ...+...+.++.+++.|+.+..+...+..-+++.+.+.++.+.+++ ++.|.+
T Consensus 98 ~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l------ 169 (293)
T 3ewb_X 98 HIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAG--ATVINI------ 169 (293)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--CCEEEE------
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcC--CCEEEe------
Confidence 8776555432 2344332 2445566777888899998876666554567888899999999998 665543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc-eeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSR-IRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~-i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.|- ...+|.++.+++...+..+|+.. +.++..-|+ +..-....++.+||+.+ +. |+ .+.+...
T Consensus 170 ~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlGe---raGN~~~ 242 (293)
T 3ewb_X 170 PDTV----GYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIGE---RAGNTAL 242 (293)
T ss_dssp ECSS----SCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCT---TTCBCBH
T ss_pred cCCC----CCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeecccccc---ccccHhH
Confidence 2332 34678899999999999898632 333322232 22334566899999988 11 22 1233445
Q ss_pred hHHHHHHHH----cCCC
Q psy14485 321 NDDSKLLKK----LGIN 333 (348)
Q Consensus 321 ~~~~~~i~~----~G~~ 333 (348)
+++..+++. .|+.
T Consensus 243 E~vv~~L~~~~~~~g~~ 259 (293)
T 3ewb_X 243 EEVAVALHIRKDFYQAE 259 (293)
T ss_dssp HHHHHHHHHTHHHHCEE
T ss_pred HHHHHHHHhhhhhcCCC
Confidence 777888874 6775
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0013 Score=60.84 Aligned_cols=209 Identities=9% Similarity=0.087 Sum_probs=137.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe----ccCCCCC-cccHHHHHHHHHHHHhc--CcEEEE--ecCCCCHHHHHHHHHhC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG----AAWRELK-DRDLDNIENMICEVKKI--GLETCL--TLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~----gg~~~~~-~~~~~~~~~l~~~i~~~--~~~i~~--~~g~l~~e~l~~Lk~aG 168 (348)
++.++.++.++.+.+.|+..|-++ .++.+|. ......-.+.++.+++. +..+.+ .++.-..+.++...++|
T Consensus 27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG 106 (345)
T 1nvm_A 27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 106 (345)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCC
Confidence 789999999999999999999875 1111110 00111233455555542 444432 44555688999999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.+ ..+...+.++.+++.|+.+...+.-...-+++.+.+.++.+.+.+ ++.+.+
T Consensus 107 vd~v~I~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G--a~~i~l----- 168 (345)
T 1nvm_A 107 ARVVRVATHCT-----------EADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYM----- 168 (345)
T ss_dssp CCEEEEEEETT-----------CGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEE-----
T ss_pred cCEEEEEEecc-----------HHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC--CCEEEE-----
Confidence 99988753222 124567788899999998877765555667888999999999998 665443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~ 319 (348)
++|- ...++.++.+++...|..+| +..|.+- -|+ +.--....++.+||+.+ +. |+ .+.+..
T Consensus 169 -~DT~----G~~~P~~v~~lv~~l~~~~~~~~pi~~H--~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~---~aGN~~ 238 (345)
T 1nvm_A 169 -ADSG----GAMSMNDIRDRMRAFKAVLKPETQVGMH--AHHNLSLGVANSIVAVEEGCDRVDASLAGMGA---GAGNAP 238 (345)
T ss_dssp -ECTT----CCCCHHHHHHHHHHHHHHSCTTSEEEEE--CBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCB
T ss_pred -CCCc----CccCHHHHHHHHHHHHHhcCCCceEEEE--ECCCccHHHHHHHHHHHcCCCEEEecchhccC---CccCcC
Confidence 3342 22458899999999999886 4333221 132 22334566899999987 22 22 133344
Q ss_pred chHHHHHHHHcCCCc
Q psy14485 320 TNDDSKLLKKLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~~~G~~p 334 (348)
.+++..+++..|+.+
T Consensus 239 le~lv~~L~~~g~~~ 253 (345)
T 1nvm_A 239 LEVFIAVAERLGWNH 253 (345)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHhcCCCC
Confidence 578888899999874
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0036 Score=57.23 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=135.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHh----CCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV----GLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~a----G~~~i 172 (348)
.++.++.++.++.+.+.|++.|-++.. ..++.+.+.+.++.+.+ .+..+.+- .....+.++.-.++ |+++|
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p--~~~~~d~e~v~~i~~~~--~~~~i~~l-~r~~~~~i~~a~~al~~ag~~~v 98 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGFP--VSSPGDFNSVVEITKAV--TRPTICAL-TRAKEADINIAGEALRFAKRSRI 98 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEECT--TSCHHHHHHHHHHHHHC--CSSEEEEE-CCSCHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCHhHHHHHHHHHHhC--CCCEEEEe-ecCCHHHHHHHHHhhcccCCCEE
Confidence 378899999999999999998876431 11222333343333322 24444321 22335555555555 99998
Q ss_pred eccCCCCHHH-HhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKL-YGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~-l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+..-+++-. ...++. ....+...++++.+++.|+.+..+..++.--+++.+.+.++.+.+.+ ++.|.+
T Consensus 99 ~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l------ 170 (325)
T 3eeg_A 99 HTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAG--ADVVNI------ 170 (325)
T ss_dssp EEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHT--CSEEEC------
T ss_pred EEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcC--CCEEEe------
Confidence 8766555432 233443 34677888999999999999877777666567888899999999998 665442
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.|- ...+|.++.+++...+..+|+. .+.++..-|+ +..-....++.+||+.+ +. |+ .+.+...
T Consensus 171 ~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~GlGe---r~GN~~l 243 (325)
T 3eeg_A 171 PDTT----GYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIGE---RAGNTAL 243 (325)
T ss_dssp CBSS----SCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCCS---TTCCCBH
T ss_pred cCcc----CCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc---cccchhH
Confidence 3332 3467889999999999989862 1333321232 22334566899999998 21 22 1233445
Q ss_pred hHHHHHHHH----cCCC
Q psy14485 321 NDDSKLLKK----LGIN 333 (348)
Q Consensus 321 ~~~~~~i~~----~G~~ 333 (348)
+++..+++. .|+.
T Consensus 244 E~vv~~L~~~~~~~g~~ 260 (325)
T 3eeg_A 244 EEVVMAMECHKETLGLE 260 (325)
T ss_dssp HHHHHHHHHTHHHHCEE
T ss_pred HHHHHHHHhhhhccCCC
Confidence 777777764 5664
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0042 Score=57.78 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=134.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH----HHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRL----KKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~L----k~aG~~~i 172 (348)
.++.++-++.++.+.+.|++.|-.+.. ..++.+.+.+..+.+.+ .+..++.-. ....+.++.- +.+|+++|
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p--~~~~~d~e~v~~i~~~~--~~~~i~~l~-r~~~~di~~a~~al~~ag~~~v 104 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFA--AASPGDFEAVNAIAKTI--TKSTVCSLS-RAIERDIRQAGEAVAPAPKKRI 104 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEG--GGCHHHHHHHHHHHTTC--SSSEEEEEE-ESSHHHHHHHHHHHTTSSSEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC--CCCHHHHHHHHHHHHhC--CCCeEEEEe-cCCHHHHHHHHHHHhhCCCCEE
Confidence 378999999999999999998866432 11223344444443322 234443211 1134444444 44899999
Q ss_pred eccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+..-+++-. ...++.. ...+...++++.+++.|..+..+...+.-.+++.+.+.++.+.+.+ .+.|.+
T Consensus 105 ~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G--a~~i~l------ 176 (370)
T 3rmj_A 105 HTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG--ATTINI------ 176 (370)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT--CCEEEE------
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC--CCEEEe------
Confidence 8877666433 3345432 1345555677888899998776666666667888999999999998 665432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.|- ...+|.++.+++...+..+|+. .+.++..-|| +..-....|+.+||+.+ +. |+ .+.+...
T Consensus 177 ~DT~----G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGe---raGN~~l 249 (370)
T 3rmj_A 177 PDTV----GYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGE---RAGNASV 249 (370)
T ss_dssp ECSS----SCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBH
T ss_pred cCcc----CCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccCc---ccccccH
Confidence 3342 3467889999999999888862 1333321232 22334566899999998 22 22 1233344
Q ss_pred hHHHHHHHH----cCCCc
Q psy14485 321 NDDSKLLKK----LGINT 334 (348)
Q Consensus 321 ~~~~~~i~~----~G~~p 334 (348)
+++..+++. .|+.+
T Consensus 250 E~vv~~L~~~~~~~g~~t 267 (370)
T 3rmj_A 250 EEIVMALKVRHDLFGLET 267 (370)
T ss_dssp HHHHHHHHHTHHHHCCBC
T ss_pred HHHHHHHHhhhhccCCCC
Confidence 666666653 47753
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0016 Score=63.28 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=134.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC------CCCcccHHHHHHHHHHHHhcCcEEEEe----cCC------CCHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----LGM------LNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~------~~~~~~~~~~~~l~~~i~~~~~~i~~~----~g~------l~~e~l 161 (348)
++.++.++.++.+.+.|+..|-.+++.. .....+.+.+..+.+.+....+...+. .|. +.+..+
T Consensus 44 ~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~v 123 (539)
T 1rqb_A 44 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFV 123 (539)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHH
Confidence 6789999999999999999998876522 012234444444444333222222221 132 245678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE--eeecCCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~--i~Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-+++ .+...++++.+++.|..+...+ ..|...+++.+++.++.+.+++ ++
T Consensus 124 e~a~~aGvd~vrIf~s~sd-----------~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 190 (539)
T 1rqb_A 124 DKSAENGMDVFRVFDAMND-----------PRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--AD 190 (539)
T ss_dssp HHHHHTTCCEEEECCTTCC-----------THHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCCCEEEEEEehhH-----------HHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcC--CC
Confidence 9999999998886543321 1556789999999999875554 4455678999999999999998 76
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccc---cchhhHHHHHHhCccee---eeCCee
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
.|.+ +.|- ...+|.++.+++...|..+| +..|.+- -|+ +..-....|+.+||+.+ +.|- -
T Consensus 191 ~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~i~I~~H--~Hnd~GlAvAN~laAveAGa~~VD~ti~g~-G 257 (539)
T 1rqb_A 191 SIAL------KDMA----ALLKPQPAYDIIKAIKDTYGQKTQINLH--CHSTTGVTEVSLMKAIEAGVDVVDTAISSM-S 257 (539)
T ss_dssp EEEE------EETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEE--EBCTTSCHHHHHHHHHHTTCSEEEEBCGGG-C
T ss_pred EEEe------CCCC----CCcCHHHHHHHHHHHHHhcCCCceEEEE--eCCCCChHHHHHHHHHHhCCCEEEEecccc-C
Confidence 5443 2221 34578899999999888887 4333321 132 12234566899999988 2110 0
Q ss_pred ccCCCCCchHHHHHHHHcCCCc
Q psy14485 313 LTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~~~G~~p 334 (348)
-.+.+...+.+..+++..|+.+
T Consensus 258 ertGN~~lE~lv~~L~~~g~~t 279 (539)
T 1rqb_A 258 LGPGHNPTESVAEMLEGTGYTT 279 (539)
T ss_dssp STTSBCBHHHHHHHTTTSSEEC
T ss_pred CCccChhHHHHHHHHHhcCCCc
Confidence 0123333467777777777754
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0086 Score=60.34 Aligned_cols=209 Identities=13% Similarity=0.068 Sum_probs=138.8
Q ss_pred cCHHHHHHHHHHHHhC--CCCEEEEeccCC------CCCcccHHHHHHHHHHHHhcCcEEEEec----C------CCCHH
Q psy14485 98 LSIESVITAAQKAKSD--GATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLTL----G------MLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~------~~~~~~~~~~~~l~~~i~~~~~~i~~~~----g------~l~~e 159 (348)
++.++.+..++.+.+. |+..|-.+||.+ .+...+++.+.++.+.+....+...+.. | .+...
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~ 201 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFK 201 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHH
Confidence 6899999999999887 576787765522 2223455666666666654333333321 1 11357
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee---c-C----CCHHHHHHHHHHH
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---L-S----ESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G---l-g----et~e~~~~~l~~l 231 (348)
.++...++|++.+.+..-.+ ..+....+++.+++.|..+...+.+. . . .+.+.+++.++.+
T Consensus 202 ~i~~a~~~Gvd~irIf~s~n-----------~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l 270 (718)
T 3bg3_A 202 FCEVAKENGMDVFRVFDSLN-----------YLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEEL 270 (718)
T ss_dssp HHHHHHHHTCCEEEEECSSC-----------CHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEEecHH-----------HHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHH
Confidence 78999999999987653111 35677888999999998877766666 2 1 2778899999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee--
Q psy14485 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI-- 306 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~-- 306 (348)
.+.+ ++.|.+ +.|- ....+.++.+++...|..+|+..|.+-. |+ +..-....|+.+||+.+
T Consensus 271 ~~~G--a~~I~l------~DT~----G~~~P~~v~~lV~~lk~~~p~~~I~~H~--Hnd~GlAvANslaAveAGa~~VD~ 336 (718)
T 3bg3_A 271 VRAG--THILCI------KDMA----GLLKPTACTMLVSSLRDRFPDLPLHIHT--HDTSGAGVAAMLACAQAGADVVDV 336 (718)
T ss_dssp HHHT--CSEEEE------ECTT----SCCCHHHHHHHHHHHHHHSTTCCEEEEC--CCTTSCHHHHHHHHHHTTCSEEEE
T ss_pred HHcC--CCEEEE------cCcC----CCcCHHHHHHHHHHHHHhCCCCeEEEEE--CCCccHHHHHHHHHHHhCCCEEEe
Confidence 9998 665543 3332 3467889999999999988864443322 32 22334566899999998
Q ss_pred -ee--CCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 307 -FY--GDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 307 -~~--~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+. |+ .+.++..+++..+++..|+.+
T Consensus 337 ti~GlGe---rtGN~~lE~vv~~L~~~g~~t 364 (718)
T 3bg3_A 337 AADSMSG---MTSQPSMGALVACTRGTPLDT 364 (718)
T ss_dssp BCGGGCS---TTSCCBHHHHHHHHTTSTTCC
T ss_pred cCccccc---ccCchhHHHHHHHHHhcCCCc
Confidence 22 22 233444578888888888764
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0051 Score=58.87 Aligned_cols=211 Identities=17% Similarity=0.161 Sum_probs=132.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEEe----cCCC------CHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLT----LGML------NENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~----~g~l------~~e~l 161 (348)
++.++.++.++.+.+.|+..|-.+++.+. ....+.+.+..+.+.+....+...+. .|.. .+..+
T Consensus 27 ~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v 106 (464)
T 2nx9_A 27 LRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFV 106 (464)
T ss_dssp CCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHH
Confidence 67888888898999999999988765210 12234444444443322222222232 1321 25678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE--eeecCCCHHHHHHHHHHHHhcCCCCC
Q psy14485 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~--i~Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-++ ..+...++++.+++.|..+..++ ..|...+++.+++.++.+.+.+ ++
T Consensus 107 ~~a~~~Gvd~i~if~~~s-----------d~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 173 (464)
T 2nx9_A 107 ERAVKNGMDVFRVFDAMN-----------DVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG--VD 173 (464)
T ss_dssp HHHHHTTCCEEEECCTTC-----------CTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCcCEEEEEEecC-----------HHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC--CC
Confidence 899999999888654332 12466789999999999876555 4455668999999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeee--CCeecc
Q psy14485 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFY--GDKLLT 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~--~~~~~~ 314 (348)
.|.+- .|- ....|.+..+++...|..+ +..|.+- -|+ +..-....|+.+||+.+=. +..--.
T Consensus 174 ~I~l~------DT~----G~~~P~~v~~lv~~l~~~~-~~~i~~H--~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~ger 240 (464)
T 2nx9_A 174 SIALK------DMA----GILTPYAAEELVSTLKKQV-DVELHLH--CHSTAGLADMTLLKAIEAGVDRVDTAISSMSGT 240 (464)
T ss_dssp EEEEE------ETT----SCCCHHHHHHHHHHHHHHC-CSCEEEE--ECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCST
T ss_pred EEEEc------CCC----CCcCHHHHHHHHHHHHHhc-CCeEEEE--ECCCCChHHHHHHHHHHhCCCEEEEeccccCCC
Confidence 65432 221 3356888999998888776 3223221 122 1123456689999998821 110002
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy14485 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+.+
T Consensus 241 tGN~~lE~lv~~L~~~g~~t 260 (464)
T 2nx9_A 241 YGHPATESLVATLQGTGYDT 260 (464)
T ss_dssp TSCCBHHHHHHHHTTSTTCC
T ss_pred CcCHHHHHHHHHHHhcCCCc
Confidence 33344578888888888874
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.007 Score=52.72 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
.++..+.++.+.+.|++.+++...... ........++++.+++ .++++.++.+..+.+.++.+.++|++.+.++.+
T Consensus 32 ~~~~~~~a~~~~~~G~d~i~v~~~~~~--~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~- 108 (253)
T 1h5y_A 32 VGDPVEMAVRYEEEGADEIAILDITAA--PEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA- 108 (253)
T ss_dssp EECHHHHHHHHHHTTCSCEEEEECCCC--TTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH-
T ss_pred cccHHHHHHHHHHcCCCEEEEEeCCcc--ccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChH-
Confidence 345666777778889998888653211 1233445677777776 478888888999999999999999999998742
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcCC---eeeEeE-------eeec--C--CCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 179 SPKLYGDIISTRDYENRLNTLKNVRNVGI---NICCGG-------IIGL--S--ESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G~---~i~~~~-------i~Gl--g--et~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
.+.. .+...+ .++..|. .+..+. .+-. + ++..+..+.++.+.+++ ++.+.++
T Consensus 109 ---~~~~------~~~~~~---~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G--~d~i~~~ 174 (253)
T 1h5y_A 109 ---AVRN------PQLVAL---LAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLT 174 (253)
T ss_dssp ---HHHC------THHHHH---HHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEE
T ss_pred ---HhhC------cHHHHH---HHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCC--CCEEEEe
Confidence 2211 111222 2233442 222221 1111 1 11122344456667777 8888877
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHH
Q psy14485 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDS 324 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~ 324 (348)
...| .||. ..++.+.+ ...+... +..+-+++|-.+. .+ ....+.+||+.++.|..+. ..+-..++..
T Consensus 175 ~~~~-~g~~----~~~~~~~i----~~l~~~~-~~pvia~GGi~~~-~~-~~~~~~~Ga~~v~vgsal~-~~~~~~~~~~ 241 (253)
T 1h5y_A 175 SIDR-DGTG----LGYDVELI----RRVADSV-RIPVIASGGAGRV-EH-FYEAAAAGADAVLAASLFH-FRVLSIAQVK 241 (253)
T ss_dssp ETTT-TTTC----SCCCHHHH----HHHHHHC-SSCEEEESCCCSH-HH-HHHHHHTTCSEEEESHHHH-TTSSCHHHHH
T ss_pred cccC-CCCc----CcCCHHHH----HHHHHhc-CCCEEEeCCCCCH-HH-HHHHHHcCCcHHHHHHHHH-cCCCCHHHHH
Confidence 6554 2332 11233222 2222223 3334444443221 22 2335678999998887553 3334578889
Q ss_pred HHHHHcCCCc
Q psy14485 325 KLLKKLGINT 334 (348)
Q Consensus 325 ~~i~~~G~~p 334 (348)
+.+++.||.+
T Consensus 242 ~~l~~~g~~~ 251 (253)
T 1h5y_A 242 RYLKERGVEV 251 (253)
T ss_dssp HHHHHTTCBC
T ss_pred HHHHHcCCCC
Confidence 9999999975
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.011 Score=55.82 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=121.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++-++.++.+.+.|++.|-.+. |.. . +...+.++.+.+.+ ..+.. ......+.++...++|++.|.+
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~----P~a-s-p~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~V~i 129 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS----PVA-S-EQSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDGVDV 129 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC----TTS-C-HHHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee----ccc-C-HHHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCEEEE
Confidence 37899999999999999999987743 211 1 23445556666543 33322 1234567789999999999998
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++-..+ .++.. ...+...+.++.+++.|+.+..+..-+...+++.+++.++.+.+.+ ++.+.+ +.
T Consensus 130 ~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~G--a~~i~l------~D 201 (423)
T 3ivs_A 130 VIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIG--VNRVGI------AD 201 (423)
T ss_dssp EEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHC--CSEEEE------EE
T ss_pred EeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhC--CCcccc------CC
Confidence 7766532222 23222 2356777889999999999887777666678899999999999998 665432 33
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
|- ...+|.++.+++...+...+ +.++..-|+ +..-....++.+||+.+
T Consensus 202 Tv----G~~~P~~v~~lv~~l~~~~~---~~i~~H~Hnd~GlAvAN~laAv~aGa~~v 252 (423)
T 3ivs_A 202 TV----GCATPRQVYDLIRTLRGVVS---CDIECHFHNDTGMAIANAYCALEAGATHI 252 (423)
T ss_dssp TT----SCCCHHHHHHHHHHHHHHCS---SEEEEEEBCTTSCHHHHHHHHHHTTCCEE
T ss_pred cc----CcCCHHHHHHHHHHHHhhcC---CeEEEEECCCCchHHHHHHHHHHhCCCEE
Confidence 32 34567788888887776553 223221232 11334566899999988
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.062 Score=48.53 Aligned_cols=228 Identities=13% Similarity=0.079 Sum_probs=136.4
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHh-cCcEEEEecCC------CCHHHHHHHH
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLGM------LNENQAYRLK 165 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~------l~~e~l~~Lk 165 (348)
+.-.+++||.+.+..+.+.|..-+++-.=+ +.-+..+.+.+.++++.|++ .++-+.++.|- -.++.+..+.
T Consensus 26 ~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~ 105 (314)
T 3lot_A 26 YLPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVP 105 (314)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHH
Confidence 334789999999999999999888775421 11124688999999999987 46666665542 2345666666
Q ss_pred HhCCCeeeccCCC-C-H--HHHhc-------------------cCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHH
Q psy14485 166 KVGLDYYNHNLDT-S-P--KLYGD-------------------IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRD 222 (348)
Q Consensus 166 ~aG~~~i~~g~et-~-~--e~l~~-------------------i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e 222 (348)
+..-+..++++.| + . +..++ +- ..++++..+.++.+++.|++...- +| +..
T Consensus 106 ~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~N~~~~i~~~~~~~~e~Gi~pE~e-~f----d~g 179 (314)
T 3lot_A 106 ALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVF-RNTFKDLEALSRIFKENDTKPELE-CY----DIG 179 (314)
T ss_dssp HHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEE-CCCHHHHHHHHHHHHHHTCEEEEE-EC----SHH
T ss_pred hcCCceeeecCCCcccccccccccccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCEEEEE-EE----CHH
Confidence 7677777777765 2 1 11111 11 137888899999999999976544 34 233
Q ss_pred HHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCceec-cccccccchhhHHHHH
Q psy14485 223 QRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP--TSRIRM-SAGRKEMGETTQAFCF 299 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp--~~~i~~-s~g~~~l~~~~~~~~l 299 (348)
++. .+..+.+-+. ...-.+..|+- |-+ .. .+++++.+.-++..+..+++ +....+ +.|++. -.....++
T Consensus 180 ~l~-~~~~l~~~Gl-l~~p~~~~~Vl--Gv~-~G-~~~~p~~L~~~~~~~~~l~~~~~~~Wsv~g~Gr~q--~p~~~~A~ 251 (314)
T 3lot_A 180 QIY-NTAFMFHEGY-LEPPLRLQFIH--GIL-GG-IGTAVEDVLFMKQTADRLIGRENYTWSLVGAGRFQ--MPLGTLAV 251 (314)
T ss_dssp HHH-HHHHHHHTTC-SCSSEEEEEEE--CCB-TS-CCCCHHHHHHHHHHHHHHTCGGGEEEEEEECGGGH--HHHHHHHH
T ss_pred HHH-HHHHHHHCCC-CCCCceEEEEe--cCC-CC-CCCCHHHHHHHHHHhhhccCCCCCeEEEEecChhh--HHHHHHHH
Confidence 333 3444444442 11111112221 221 11 24678888777777755565 333332 244543 24556688
Q ss_pred HhCcceeee-CCeeccCCCC---C----chHHHHHHHHcCCCchh
Q psy14485 300 LAGANSIFY-GDKLLTTDNT---K----TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 300 ~~GAn~~~~-~~~~~~~~g~---~----~~~~~~~i~~~G~~p~~ 336 (348)
..|.|.-++ ++++....|. + .++..++++++|++|..
T Consensus 252 ~~GGhvRVGlEDnl~~~~G~lA~sNa~lV~~~~~i~~~lGr~vAT 296 (314)
T 3lot_A 252 IMGGDVRVGLEDSLYIERGKLAKSNAEQVEKMVRIVKELGKRPAT 296 (314)
T ss_dssp HTTCEEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCEECC
T ss_pred HcCCceEEccCcccccCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 888886543 3333334442 1 25778899999998653
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.086 Score=49.16 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=118.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc--EEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL--ETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~--~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|+..|-+++. .. .+...+.++.+++.+. .+.+- ..-..+.++...++|++.+.+
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~p----~~--~~~~~~~~~~i~~~~~~~~v~~~-~r~~~~di~~a~~~g~~~v~i 93 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTTP----VA--SPQSRKDAEVLASLGLKAKVVTH-IQCRLDAAKVAVETGVQGIDL 93 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECCT----TS--CHHHHHHHHHHHTSCCSSEEEEE-EESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcCC----cC--CHHHHHHHHHHHhcCCCcEEEEE-cccChhhHHHHHHcCCCEEEE
Confidence 378999999999999999999877442 11 1344566777776433 33221 112466789999999999888
Q ss_pred cCCCCHHHHhccCCCCCH----HHHHHHHHHHHHcC--CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 175 NLDTSPKLYGDIISTRDY----ENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~----~~~~~~i~~~~~~G--~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
..-+++-..+ .-+.+. +...++++.+++.| +.+..+..-+...+++.+.+.++.+.+. ++.+.+
T Consensus 94 ~~~~s~~~~~--~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~---a~~i~l----- 163 (382)
T 2ztj_A 94 LFGTSKYLRA--PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY---VDRVGL----- 163 (382)
T ss_dssp EECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG---CSEEEE-----
T ss_pred EeccCHHHHH--HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh---cCEEEe-----
Confidence 7655543322 333444 55778889999999 8887776655566778888888777666 233322
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccc---cchhhHHHHHHhCccee
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~l-p~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
+.|- ...+|.++.+++...+..+ |+..|.+- -|| +..-....|+.+||+.+
T Consensus 164 -~DT~----G~~~P~~~~~lv~~l~~~~~~~~~i~~H--~Hnd~GlAvAN~laAv~aGa~~v 218 (382)
T 2ztj_A 164 -ADTV----GVATPRQVYALVREVRRVVGPRVDIEFH--GHNDTGCAIANAYEAIEAGATHV 218 (382)
T ss_dssp -EETT----SCCCHHHHHHHHHHHHHHHTTTSEEEEE--EBCTTSCHHHHHHHHHHTTCCEE
T ss_pred -cCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEE--eCCCccHHHHHHHHHHHhCCCEE
Confidence 3331 3456888888888888765 54333321 122 22334566899999998
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.061 Score=47.84 Aligned_cols=157 Identities=11% Similarity=0.184 Sum_probs=97.9
Q ss_pred ceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHH
Q psy14485 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDN 134 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~ 134 (348)
+..+.+++++ |+- +|+. . .+| .+++++++.++...+.|..-|=++|..+.|. ....++
T Consensus 5 ~~~imgilN~-TpD--------SFsd---g--g~~--~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~R 68 (280)
T 1eye_A 5 PVQVMGVLNV-TDD--------SFSD---G--GCY--LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSR 68 (280)
T ss_dssp CCEEEEEEEC-SCC--------TTCS---S--CCC--CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHH
T ss_pred CcEEEEEEeC-CCC--------CcCC---C--ccc--CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHH
Confidence 3456677777 543 3332 1 233 6899999999999999999998887422221 234667
Q ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee-ccCCC-CHHHHhc----------cCC---CC---------
Q psy14485 135 IENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGD----------IIS---TR--------- 190 (348)
Q Consensus 135 ~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~g~et-~~e~l~~----------i~~---~~--------- 190 (348)
+..+++.+++.++.+ +..+...+.++.-.++|.+-|+ ++-.. .+++++. ++. +.
T Consensus 69 v~pvi~~l~~~~~pi--SIDT~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y 146 (280)
T 1eye_A 69 VIPVVKELAAQGITV--SIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRY 146 (280)
T ss_dssp HHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCC
T ss_pred HHHHHHHhhcCCCEE--EEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcch
Confidence 778888887655554 5566777777777777777665 22222 3444431 110 00
Q ss_pred -C-----HHHHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 191 -D-----YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 191 -~-----~~~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
+ .+...+.++.+.++|++ +..+--+|++.+.++-.+.++.+..+.
T Consensus 147 ~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~ 200 (280)
T 1eye_A 147 GNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELV 200 (280)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhh
Confidence 1 44556778888889985 777777788778877666666666553
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.048 Score=47.55 Aligned_cols=182 Identities=10% Similarity=0.028 Sum_probs=97.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCCCCc-ccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRELKD-RDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~-~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+...+.++++.+.+.|++.+++ ..|.+-|.. ... .+.+.++... +..+.+++.... ....++.+.++|.+.+.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~-~~v~~lr~~~p~~~ldvHLmv~~-p~~~i~~~~~aGAd~it 114 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGP-MVLKALRDYGITAGMDVHLMVKP-VDALIESFAKAGATSIV 114 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCH-HHHHHHHHHTCCSCEEEEEECSS-CHHHHHHHHHHTCSEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCH-HHHHHHHHhCCCCeEEEEEeeCC-HHHHHHHHHHcCCCEEE
Confidence 45556777777888888886654 334222211 122 2333333332 223334333322 24578899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..|+.+ ...++++.++++|.++...+- ..|+-+.+ +.+.+. ++.+-++... ||..
T Consensus 115 vH~Ea~~-------------~~~~~i~~ir~~G~k~Gvaln---p~Tp~e~l---~~~l~~---vD~VlvMsV~--PGfg 170 (246)
T 3inp_A 115 FHPEASE-------------HIDRSLQLIKSFGIQAGLALN---PATGIDCL---KYVESN---IDRVLIMSVN--PGFG 170 (246)
T ss_dssp ECGGGCS-------------CHHHHHHHHHTTTSEEEEEEC---TTCCSGGG---TTTGGG---CSEEEEECSC--TTC-
T ss_pred Eccccch-------------hHHHHHHHHHHcCCeEEEEec---CCCCHHHH---HHHHhc---CCEEEEeeec--CCCC
Confidence 9887632 234667778889987755422 23332222 222222 5677666554 4532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
=+...+ . .++-+...|.+.+ +..|.+.+| ++.+....+..+|||.++.|..+
T Consensus 171 GQ~fi~-~---~l~KI~~lr~~~~~~~~~~~I~VDGG---I~~~ti~~~~~aGAD~~V~GSaI 226 (246)
T 3inp_A 171 GQKFIP-A---MLDKAKEISKWISSTDRDILLEIDGG---VNPYNIAEIAVCGVNAFVAGSAI 226 (246)
T ss_dssp -CCCCT-T---HHHHHHHHHHHHHHHTSCCEEEEESS---CCTTTHHHHHTTTCCEEEESHHH
T ss_pred Ccccch-H---HHHHHHHHHHHHHhcCCCeeEEEECC---cCHHHHHHHHHcCCCEEEEehHH
Confidence 111222 2 2333334444332 344555554 22344566889999999988654
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.22 Score=44.83 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=135.9
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHh-cCcEEEEecC---CC-CHHHHHHHHH
Q psy14485 94 ATKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG---ML-NENQAYRLKK 166 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g---~l-~~e~l~~Lk~ 166 (348)
++.-.+++||.+.+..+.+.|..-+++--=+ +.-+..+.+.+.++++.|++ .+.-+.++.| .. .++.+..+.+
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~ 104 (311)
T 3e49_A 25 PYLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATH 104 (311)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHh
Confidence 3334789999999999999999888775421 11124688999999999997 4555555544 22 3466777777
Q ss_pred hCCCeeeccCCC-C-H-----------------HHH----hccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHH
Q psy14485 167 VGLDYYNHNLDT-S-P-----------------KLY----GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQ 223 (348)
Q Consensus 167 aG~~~i~~g~et-~-~-----------------e~l----~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~ 223 (348)
..-+..++++.| + . ..+ +.+- ..+++...+.++.+++.|++.... +| +..+
T Consensus 105 ~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi~pE~e-~f----d~g~ 178 (311)
T 3e49_A 105 YMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGTRFEFE-CY----DTSH 178 (311)
T ss_dssp HCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTCEEEEE-EC----SHHH
T ss_pred cCCCeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeeEEE-EE----CHHH
Confidence 677777777665 2 1 011 1111 237788899999999999977655 34 3344
Q ss_pred HHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Ccee-ccccccccchhhHHHHHHh
Q psy14485 224 RAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIR-MSAGRKEMGETTQAFCFLA 301 (348)
Q Consensus 224 ~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~-~s~g~~~l~~~~~~~~l~~ 301 (348)
+.. +..+.+-+. ...-.+..|+. |-+ . -.+.+++.+.-++..+...+|. .... ...|++. -.....++..
T Consensus 179 l~~-~~~l~~~Gl-~~~p~~~~~vl--Gv~-~-g~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~ 250 (311)
T 3e49_A 179 LYN-LAHFVDRKL-ATPPFFVQTVF--GLL-G-GIGPHPEDLAHMRRTADRLFGADYVWSILGAGRHQ--IPLASIGAAQ 250 (311)
T ss_dssp HHH-HHHHHHTTC-SCSSEEEEEEE--SCT-T-SCCCCHHHHHHHHHHHHHHHGGGEEEEEEECGGGH--HHHHHHHHTT
T ss_pred HHH-HHHHHHcCC-CCCCeEEEEEe--cCC-C-CCCCCHHHHHHHHHHHHhhCCCCCeEEEEeeChhh--HHHHHHHHHc
Confidence 433 333444442 11111122221 222 1 1256777777777666445554 3323 2344443 2355667888
Q ss_pred Ccceeee-CCeeccCCCC---C----chHHHHHHHHcCCCchh
Q psy14485 302 GANSIFY-GDKLLTTDNT---K----TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 302 GAn~~~~-~~~~~~~~g~---~----~~~~~~~i~~~G~~p~~ 336 (348)
|.|.-++ ++++....|. + .+...++++++|++|..
T Consensus 251 GGhvRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT 293 (311)
T 3e49_A 251 GANVRVGLEDSLWIAPGELAETNAAQVRKIRQVIEGLSLEVAS 293 (311)
T ss_dssp TCEEEECTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC
T ss_pred CCCeEEcCCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 8886543 3333334452 1 25678899999998653
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.38 Score=43.14 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=114.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH---h-cCcEEEEecCCCCHHHHHHHHH--hCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK---K-IGLETCLTLGMLNENQAYRLKK--VGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~---~-~~~~i~~~~g~l~~e~l~~Lk~--aG~~~ 171 (348)
.+.+.+++.++...+.|..-+-+++|. .+ ....+.+.+++..+. + .++.+ +..+...+.++.--+ +|.+-
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~-~~-v~~~eem~rvv~~i~~~~~~~~vpi--sIDT~~~~V~eaaL~~~~Ga~i 109 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDD-GL-LDARTEMTTFLNLIMSEPEIARVPV--MIDSSKWEVIEAGLKCLQGKSI 109 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCC-TT-SCHHHHHHHHHHHHHTCHHHHTSCE--EEECSCHHHHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CCHHHHHHHHHHHHHHhhhcCCCeE--EEeCCCHHHHHHHHHhcCCCCE
Confidence 578999999999999999998888762 22 223345555555554 2 24554 566788888887777 68876
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHhc--CCCCCeeeccccc
Q psy14485 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANL--NPYPESVPINNLV 247 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~l--~~~~~~i~~~~l~ 247 (348)
|+ .+.....-+.+.+.+..++++|..+..--+ -|.-+|.++..+..+.+.++ . -..++-...+
T Consensus 110 IN-----------dIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~--~~Gi~~~~Ii 176 (300)
T 3k13_A 110 VN-----------SISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVD--KVGFNPHDII 176 (300)
T ss_dssp EE-----------EECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHH--HTCCCGGGEE
T ss_pred EE-----------eCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHH--HcCCCHHHEE
Confidence 65 111111123344667888899997664434 46667777766655444433 1 0111112334
Q ss_pred ccCCC-CCCCCCC---CCHHHHHHHHHHHHHHCCCCceec-----ccc-------ccccchhhHHHHHHhCcceeeeC
Q psy14485 248 QIKGT-PLYGSSI---LDPLEFIRTIAVARITMPTSRIRM-----SAG-------RKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 248 P~~gT-~l~~~~~---~~~~~~~~~~a~~R~~lp~~~i~~-----s~g-------~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
.-||. ++..... -...+.++.+...+..+|+..+-+ |-| |+.++.-+-+.++.+|.|..+..
T Consensus 177 lDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Ivn 254 (300)
T 3k13_A 177 FDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIVN 254 (300)
T ss_dssp EECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEecC
Confidence 44555 3432111 114567777777776677643322 111 22333346677899999998654
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=45.02 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=76.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeee-
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN- 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~- 173 (348)
.+.+.+++.++...+.|..-+-++++. +.....+.+..+++.+++. ++.+ +..+...+.++.-.++ |.+-|+
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s--~~~eE~~rv~~vi~~l~~~~~~pi--sIDT~~~~v~~aal~a~~Ga~iINd 106 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGP--TADDPVRVMEWLVKTIQEVVDLPC--CLDSTNPDAIEAGLKVHRGHAMINS 106 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCS--CSSCHHHHHHHHHHHHHHHCCCCE--EEECSCHHHHHHHHHHCCSCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCc--CchhHHHHHHHHHHHHHHhCCCeE--EEeCCCHHHHHHHHHhCCCCCEEEE
Confidence 567999999999999999999998762 3344688999999999874 5555 5677799999988888 988776
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHH
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELI 228 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l 228 (348)
++.+ .+.+-+.+..++++|..+..--+ -|.-.|.+++.+.+
T Consensus 107 vs~~--------------~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l 149 (271)
T 2yci_X 107 TSAD--------------QWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLA 149 (271)
T ss_dssp ECSC--------------HHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHH
T ss_pred CCCC--------------ccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHH
Confidence 2221 12233445566666765443323 34444544444333
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.5 Score=42.51 Aligned_cols=229 Identities=11% Similarity=0.107 Sum_probs=136.1
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHh-cCcEEEEecC---CC-CHHHHHHHHHh
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG---ML-NENQAYRLKKV 167 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g---~l-~~e~l~~Lk~a 167 (348)
+.-.+++||.+.+..+.+.|..-+++--=+ +.-+..+.+.+.++++.|++ .+.-+.++.| .. .++.+..+.+.
T Consensus 26 ~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~ 105 (311)
T 3e02_A 26 YLPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAA 105 (311)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhc
Confidence 334789999999999999999888775421 11124688999999999997 4555555543 22 34677777776
Q ss_pred CCCeeeccCCC-C-H--HHHhccC---------------C---CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHH
Q psy14485 168 GLDYYNHNLDT-S-P--KLYGDII---------------S---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRA 225 (348)
Q Consensus 168 G~~~i~~g~et-~-~--e~l~~i~---------------~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~ 225 (348)
.-+..++++.| + . ...+++. . ..+++...+.++.+++.|+..... +| +..++.
T Consensus 106 ~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e-~f----d~g~l~ 180 (311)
T 3e02_A 106 RPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFE-CY----DVGHLY 180 (311)
T ss_dssp CCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEE-EC----SHHHHH
T ss_pred CCCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEE-EE----cHHHHH
Confidence 77777777665 2 1 0111111 1 246778889999999999977655 34 334443
Q ss_pred HHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceec-cccccccchhhHHHHHHhCc
Q psy14485 226 ELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRM-SAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 226 ~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~-s~g~~~l~~~~~~~~l~~GA 303 (348)
. +..+.+-+.-..-+. ..|+. |-+ . -.+.+++.+.-++..+...+|. ....+ ..|++. -.....++..|.
T Consensus 181 ~-~~~l~~~Gl~~~p~~-~~~vl--Gv~-~-g~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~GG 252 (311)
T 3e02_A 181 N-LAHFVDRKLVEPPFF-LQCVF--GIL-G-GIGADPENLLHMRTIADRLFGQDYYLSVLAAGRHQ--MPFVTMSAILGG 252 (311)
T ss_dssp H-HHHHHHTTSSCSCEE-EEEEE--CCB-T-SCCSCHHHHHHHHHHHHHHHTTSEEEEEEECGGGH--HHHHHHHHHTTC
T ss_pred H-HHHHHHcCCCCCCeE-EEEEe--cCC-C-CCCCCHHHHHHHHHHHHhhCCCCCceEEEeeChhh--HHHHHHHHHcCC
Confidence 3 333444442011111 22221 222 1 1246788777777766455564 33332 344543 235566888888
Q ss_pred ceeee-CCeeccCCCC---C----chHHHHHHHHcCCCchh
Q psy14485 304 NSIFY-GDKLLTTDNT---K----TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 304 n~~~~-~~~~~~~~g~---~----~~~~~~~i~~~G~~p~~ 336 (348)
|.-++ ++++....|. + .+...++++++|++|..
T Consensus 253 hvRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT 293 (311)
T 3e02_A 253 NVRVGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIAT 293 (311)
T ss_dssp EEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC
T ss_pred CeEEccCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 86543 3333334452 1 25678899999998653
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.081 Score=47.32 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=79.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+.+.+++.+++..+.|..-|=++|..+.|. ....+++..+++.+++.++.+ +..+...+.++.--++|.+-
T Consensus 49 ~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpi--SIDT~~~~Va~aAl~aGa~i 126 (294)
T 2dqw_A 49 LDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPV--SVDTRKPEVAEEALKLGAHL 126 (294)
T ss_dssp ----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCE--EEECSCHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeE--EEECCCHHHHHHHHHhCCCE
Confidence 5788999999999999999998887433231 235677888888887655544 55566666666666666665
Q ss_pred ee-ccCCCCHHHHhc----------cC-C---CCC--------------HHHHHHHHHHHHHcCCe-eeEeEeeecCCCH
Q psy14485 172 YN-HNLDTSPKLYGD----------II-S---TRD--------------YENRLNTLKNVRNVGIN-ICCGGIIGLSESR 221 (348)
Q Consensus 172 i~-~g~et~~e~l~~----------i~-~---~~~--------------~~~~~~~i~~~~~~G~~-i~~~~i~Glget~ 221 (348)
|+ ++-+..+++++. ++ + +.+ .+...+.++.+.++|++ +..+--+|++.|.
T Consensus 127 INdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~ 206 (294)
T 2dqw_A 127 LNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLL 206 (294)
T ss_dssp EECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCH
T ss_pred EEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCH
Confidence 54 111122344321 11 0 111 23445567777788884 5556555777788
Q ss_pred HHHHHHHHHHHhcC
Q psy14485 222 DQRAELIFQLANLN 235 (348)
Q Consensus 222 e~~~~~l~~l~~l~ 235 (348)
++-.+.++.+..+.
T Consensus 207 ~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 207 EHNLALLRRLDEIV 220 (294)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77666666665553
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.19 Score=43.60 Aligned_cols=205 Identities=16% Similarity=0.117 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
.+.++.+.+.|++.+++.+.. ..........+.++.+++ .++++.++.|..+.+.++.+.++|++.+.++-+.
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~--~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~---- 106 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDIT--ASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAA---- 106 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESS--CSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH----
T ss_pred HHHHHHHHHcCCCEEEEECCc--hhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH----
Confidence 444466677899999887542 112234456677788876 4788888999999999999999999999876532
Q ss_pred HhccCCCCCHHHHHHHHHHHHH--cCCeeeEe------EeeecCC---CHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 183 YGDIISTRDYENRLNTLKNVRN--VGINICCG------GIIGLSE---SRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~~------~i~Glge---t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
+.. ++...+.++.+.. ..+.+.+. .+.=.|. +..+..+.++.+.+++ ++.+.++...+. |
T Consensus 107 l~~------p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~~-g 177 (253)
T 1thf_D 107 VEN------PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTSIDRD-G 177 (253)
T ss_dssp HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETTTT-T
T ss_pred HhC------hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCC--CCEEEEEeccCC-C
Confidence 221 1222333333221 11222221 1111221 1112344455566676 676665543322 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcC
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 331 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G 331 (348)
+. ..++.+. +...+... +..+-+++|-.+ .+.....+.+||+.++.|..+. ...-...+..+.+++.|
T Consensus 178 ~~----~g~~~~~----~~~l~~~~-~ipvia~GGI~~--~~d~~~~~~~Gadgv~vGsal~-~~~~~~~~~~~~l~~~g 245 (253)
T 1thf_D 178 TK----SGYDTEM----IRFVRPLT-TLPIIASGGAGK--MEHFLEAFLAGADAALAASVFH-FREIDVRELKEYLKKHG 245 (253)
T ss_dssp SC----SCCCHHH----HHHHGGGC-CSCEEEESCCCS--HHHHHHHHHTTCSEEEESHHHH-TTCSCHHHHHHHHHHTT
T ss_pred CC----CCCCHHH----HHHHHHhc-CCCEEEECCCCC--HHHHHHHHHcCChHHHHHHHHH-cCCCCHHHHHHHHHHcC
Confidence 22 1233322 22222222 222333443222 1223335679999998886442 22225678888899999
Q ss_pred CCch
Q psy14485 332 INTR 335 (348)
Q Consensus 332 ~~p~ 335 (348)
+.+.
T Consensus 246 ~~~~ 249 (253)
T 1thf_D 246 VNVR 249 (253)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7543
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.12 Score=46.03 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=91.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++++.++...+.|+.-|=++|..+.|. ....+++..+++.+++. ++.+ +..+...+.++.--++|.+
T Consensus 35 ~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~pi--SIDT~~~~va~aAl~aGa~ 112 (282)
T 1aj0_A 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKVGAH 112 (282)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEE--EEECCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeE--EEeCCCHHHHHHHHHcCCC
Confidence 5789999999999999999998887433332 23456777788888764 5555 5666777777777777777
Q ss_pred eeec-cCCCCHHHHhc----------cC-C--CCC--------------HHHHHHHHHHHHHcCCe---eeEeEeeecCC
Q psy14485 171 YYNH-NLDTSPKLYGD----------II-S--TRD--------------YENRLNTLKNVRNVGIN---ICCGGIIGLSE 219 (348)
Q Consensus 171 ~i~~-g~et~~e~l~~----------i~-~--~~~--------------~~~~~~~i~~~~~~G~~---i~~~~i~Glge 219 (348)
-|+- +-+..+++++. ++ + +.+ .+...+.++.+.++|++ +..+--+|++.
T Consensus 113 iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k 192 (282)
T 1aj0_A 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGK 192 (282)
T ss_dssp EEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCccc
Confidence 6652 22222344431 11 1 111 55666778888899995 78887778888
Q ss_pred CHHHHHHHHHHHHhcC
Q psy14485 220 SRDQRAELIFQLANLN 235 (348)
Q Consensus 220 t~e~~~~~l~~l~~l~ 235 (348)
+.++-.+.++.+..+.
T Consensus 193 ~~~~n~~ll~~l~~~~ 208 (282)
T 1aj0_A 193 NLSHNYSLLARLAEFH 208 (282)
T ss_dssp CHHHHHHHHHTGGGGG
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8887777776666554
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.2 Score=43.27 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCH-HHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNE-NQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~~ 174 (348)
+...+.++++.+ +.|++.+++. .|.+-| ... .-..+++.+++. +..+-++....++ ..++.+.++|.+.+.+
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvDvmDG~fvp-n~t--~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itv 86 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHIDIMDGHFVP-NLT--LSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITL 86 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEEEECSSSSS-CCC--BCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEE
T ss_pred ChhhHHHHHHHH-HcCCCEEEEEEEeCccCc-cch--hcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 344556666677 7788865443 442222 111 123466677663 3333333322233 3589999999999998
Q ss_pred cCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 175 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 175 g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
-.|+ .+ ...++++.+++.|.++...+ ..+ |+.+.+ +.+.+ . ++.+-++...| |+.
T Consensus 87 h~Ea~~~-------------~~~~~i~~i~~~G~k~gv~l--np~-tp~~~~---~~~l~-~--~D~VlvmsV~p--Gfg 142 (231)
T 3ctl_A 87 HPETING-------------QAFRLIDEIRRHDMKVGLIL--NPE-TPVEAM---KYYIH-K--ADKITVMTVDP--GFA 142 (231)
T ss_dssp CGGGCTT-------------THHHHHHHHHHTTCEEEEEE--CTT-CCGGGG---TTTGG-G--CSEEEEESSCT--TCS
T ss_pred CcccCCc-------------cHHHHHHHHHHcCCeEEEEE--ECC-CcHHHH---HHHHh-c--CCEEEEeeecc--CcC
Confidence 7665 31 13367888899999876554 223 432222 22222 2 67777766665 332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeC-Ceecc
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYG-DKLLT 314 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~-~~~~~ 314 (348)
=+.. .++. ++-+...|.+.+ +..|.+.+| +..+.......+|||.++.| ..+..
T Consensus 143 gQ~f-~~~~---l~kI~~lr~~~~~~~~~~~I~VdGG---I~~~~~~~~~~aGAd~~V~G~saif~ 201 (231)
T 3ctl_A 143 GQPF-IPEM---LDKLAELKAWREREGLEYEIEVDGS---CNQATYEKLMAAGADVFIVGTSGLFN 201 (231)
T ss_dssp SCCC-CTTH---HHHHHHHHHHHHHHTCCCEEEEESC---CSTTTHHHHHHHTCCEEEECTTTTGG
T ss_pred Cccc-cHHH---HHHHHHHHHHHhccCCCceEEEECC---cCHHHHHHHHHcCCCEEEEccHHHhC
Confidence 1111 2222 333333444332 334555554 22344556789999999999 76543
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.23 Score=44.74 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=88.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc----------cHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDR----------DLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKK 166 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~----------~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~ 166 (348)
.+++++++.++...+.|+.-|=++|..+.|... ..+++..+++.+++. ++. ++..+...+.++.-.+
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vp--ISIDT~~~~Va~aAl~ 123 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQL--ISVDTSRPRVMREAVN 123 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSE--EEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCe--EEEeCCCHHHHHHHHH
Confidence 589999999999999999988887643333211 234567777777763 444 4677888888888888
Q ss_pred hCCCeee-ccCCCCHHHHhcc----------C-C--CCC-------------HHHHHHHHHHHHHcCCe---eeEeEeee
Q psy14485 167 VGLDYYN-HNLDTSPKLYGDI----------I-S--TRD-------------YENRLNTLKNVRNVGIN---ICCGGIIG 216 (348)
Q Consensus 167 aG~~~i~-~g~et~~e~l~~i----------~-~--~~~-------------~~~~~~~i~~~~~~G~~---i~~~~i~G 216 (348)
+|.+-|+ ++-...+++++.+ + + +.+ .+...+.++.+.++|+. +..+--+|
T Consensus 124 aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 124 TGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp HTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 8988765 2222234444311 1 1 111 33445677788889984 77776678
Q ss_pred ---cCCCHHHHHHHHHHHHhc
Q psy14485 217 ---LSESRDQRAELIFQLANL 234 (348)
Q Consensus 217 ---lget~e~~~~~l~~l~~l 234 (348)
++.|.++-.+.++.+..+
T Consensus 204 ~~~F~Kt~~~n~~lL~~l~~l 224 (314)
T 3tr9_A 204 QGNYGKNVSENFYLLNKLPEF 224 (314)
T ss_dssp SGGGCCCHHHHHHHHHTTHHH
T ss_pred chhhcCCHHHHHHHHHHHHHH
Confidence 888887766666555444
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.14 Score=44.14 Aligned_cols=181 Identities=15% Similarity=0.187 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--eccCCCCC-cccHHHHHHHHHHH--HhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCM--GAAWRELK-DRDLDNIENMICEV--KKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~-~~~~~~~~~l~~~i--~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+...+.++++.+.+.|++.+++ ..|.+-|. ....+ +.+-++.. ....+.+++..... ...++.+.++|+|.+.
T Consensus 15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~-~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~it 92 (228)
T 3ovp_A 15 DLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHP-VVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQYT 92 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHH-HHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEEE
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHH-HHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEEE
Confidence 4455666677777888886655 33422221 12333 33333333 22233344333222 3468899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..|+.+ ...+.++.+++.|.++...+- ..|+.+. ++.+... ++.+-++... ||.
T Consensus 93 vH~Ea~~-------------~~~~~i~~i~~~G~k~gval~---p~t~~e~---l~~~l~~---~D~Vl~msv~--pGf- 147 (228)
T 3ovp_A 93 FHLEATE-------------NPGALIKDIRENGMKVGLAIK---PGTSVEY---LAPWANQ---IDMALVMTVE--PGF- 147 (228)
T ss_dssp EEGGGCS-------------CHHHHHHHHHHTTCEEEEEEC---TTSCGGG---TGGGGGG---CSEEEEESSC--TTT-
T ss_pred EccCCch-------------hHHHHHHHHHHcCCCEEEEEc---CCCCHHH---HHHHhcc---CCeEEEeeec--CCC-
Confidence 8776531 134567788889987644422 2333222 2222222 5666555554 443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..+.. .+ ..++-+...|...++..|.+.+|- ..+....+..+|||.++.|..+
T Consensus 148 -~Gq~f-~~-~~l~ki~~lr~~~~~~~I~VdGGI---~~~t~~~~~~aGAd~~VvGsaI 200 (228)
T 3ovp_A 148 -GGQKF-ME-DMMPKVHWLRTQFPSLDIEVDGGV---GPDTVHKCAEAGANMIVSGSAI 200 (228)
T ss_dssp -CSCCC-CG-GGHHHHHHHHHHCTTCEEEEESSC---STTTHHHHHHHTCCEEEESHHH
T ss_pred -CCccc-CH-HHHHHHHHHHHhcCCCCEEEeCCc---CHHHHHHHHHcCCCEEEEeHHH
Confidence 22211 11 223335555666666666666543 2445566889999999988654
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.16 Score=54.18 Aligned_cols=208 Identities=10% Similarity=0.025 Sum_probs=131.4
Q ss_pred cCHHHHHHHHHHHHhCC--CCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----cCC------CCHH
Q psy14485 98 LSIESVITAAQKAKSDG--ATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----LGM------LNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----~g~------l~~e 159 (348)
++.++.+..++.+.+.| +..|-+.||.+.+ ...+++.+.++.+.+....+...+. .|. ...+
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~ 649 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKY 649 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHH
Confidence 78899999999998885 5556554442211 2235566666666655422222222 121 2346
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec------C--CCHHHHHHHHHHH
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL------S--ESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl------g--et~e~~~~~l~~l 231 (348)
.++...++|++.+.+.. + + ...+....+++.+++.|..+...+.|.. . .+.+.+++.++.+
T Consensus 650 ~i~~a~~~g~d~irif~-s-------l---~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~ 718 (1165)
T 2qf7_A 650 FVRQAAKGGIDLFRVFD-C-------L---NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVEL 718 (1165)
T ss_dssp HHHHHHHHTCCEEEEEC-T-------T---CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEEe-e-------H---HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHH
Confidence 78999999999977632 2 1 2345667889999999987776665541 1 4778899999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee--
Q psy14485 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI-- 306 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~-- 306 (348)
.+.+ ++.|.+ +.|- ...+|.+..+++...|..+ +..|.+- -|+ +..-....|+.+||+.+
T Consensus 719 ~~~G--a~~i~l------~DT~----G~~~P~~~~~lv~~l~~~~-~~~i~~H--~Hnd~GlAvAn~laAv~aGa~~vd~ 783 (1165)
T 2qf7_A 719 EKAG--AHIIAV------KDMA----GLLKPAAAKVLFKALREAT-GLPIHFH--THDTSGIAAATVLAAVEAGVDAVDA 783 (1165)
T ss_dssp HHTT--CSEEEE------EETT----CCCCHHHHHHHHHHHHHHC-SSCEEEE--ECBTTSCHHHHHHHHHHTTCSEEEE
T ss_pred HHcC--CCEEEE------eCcc----CCcCHHHHHHHHHHHHHhc-CCeEEEE--ECCCCCHHHHHHHHHHHhCCCEEEe
Confidence 9998 775543 2231 3457888899998888776 3333221 122 22334566899999998
Q ss_pred -ee--CCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 307 -FY--GDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 307 -~~--~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+. |+ .+.++..+++..+++..|+.+
T Consensus 784 ti~GlGe---~~Gn~~le~vv~~L~~~g~~t 811 (1165)
T 2qf7_A 784 AMDALSG---NTSQPCLGSIVEALSGSERDP 811 (1165)
T ss_dssp BCGGGCS---BTSCCBHHHHHHHHTTSTTCC
T ss_pred cccccCC---CccchhHHHHHHHHHhcCCCc
Confidence 22 23 133444577888888888764
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.12 Score=46.26 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=98.5
Q ss_pred ceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHH
Q psy14485 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDN 134 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~ 134 (348)
+..+.+++|+ |+- +|+. . .+| .+.+.+++.++...+.|..-|=++|..+.|. ....++
T Consensus 22 ~~~iMgilNv-TPD--------SFsd---g--g~~--~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~R 85 (294)
T 2y5s_A 22 RPLVMGILNA-TPD--------SFSD---G--GRF--LARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELAR 85 (294)
T ss_dssp SCEEEEEEEC-CC-------------------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHH
T ss_pred CceEEEEEeC-CCC--------CCCC---C--CCc--CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHH
Confidence 3566778887 543 2332 1 133 5789999999999999999998887433231 123556
Q ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee-ccCCCCHHHHhcc----------CC---CCC---------
Q psy14485 135 IENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN-HNLDTSPKLYGDI----------IS---TRD--------- 191 (348)
Q Consensus 135 ~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~g~et~~e~l~~i----------~~---~~~--------- 191 (348)
+..+++.+++.++.+ +..+...+.++.--++|.+-|+ ++-+..+++++.+ +. +.+
T Consensus 86 v~pvi~~l~~~~vpi--SIDT~~~~Va~aAl~aGa~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~ 163 (294)
T 2y5s_A 86 VIPLVEALRPLNVPL--SIDTYKPAVMRAALAAGADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYG 163 (294)
T ss_dssp HHHHHHHHGGGCSCE--EEECCCHHHHHHHHHHTCSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCS
T ss_pred HHHHHHHHhhCCCeE--EEECCCHHHHHHHHHcCCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccc
Confidence 777777776555444 6778888888888888987775 2222234555421 11 011
Q ss_pred ------HHHHHHHHHHHHHcCCe---eeEeEeeecCCCH-HHHHHHHHHHHhcC
Q psy14485 192 ------YENRLNTLKNVRNVGIN---ICCGGIIGLSESR-DQRAELIFQLANLN 235 (348)
Q Consensus 192 ------~~~~~~~i~~~~~~G~~---i~~~~i~Glget~-e~~~~~l~~l~~l~ 235 (348)
.+...+.++.+.++|++ +..+--+|++.|. ++-.+.++.+.++.
T Consensus 164 dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 164 DVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHH
Confidence 34445677788889985 7788777777777 77777776666654
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.49 Score=41.55 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred ceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHH
Q psy14485 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDN 134 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~ 134 (348)
+-.+.+++|+ |+- +|+. . .+| .+++..++.++.+.+.|+.-|=++|-.+.|.. ...++
T Consensus 6 r~~iMGIlNv-TPD--------SFsD---G--G~~--~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~R 69 (270)
T 4hb7_A 6 KTKIMGILNV-TPD--------SFSD---G--GKF--NNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNR 69 (270)
T ss_dssp CCEEEEEEEC-C-------------------------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHH
T ss_pred CCeEEEEEeC-CCC--------CCCC---C--CCC--CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHH
Confidence 3456677787 543 2332 1 234 57899999999999999999888775333321 23456
Q ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee-cc-CCCCHHHHhcc----------CC---CC--C-----H
Q psy14485 135 IENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN-HN-LDTSPKLYGDI----------IS---TR--D-----Y 192 (348)
Q Consensus 135 ~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~g-~et~~e~l~~i----------~~---~~--~-----~ 192 (348)
+..+++.+++.++ .++..+...+.++.--++|++-|+ ++ ...++++++.+ +. ++ + .
T Consensus 70 v~pvi~~l~~~~v--~iSIDT~~~~Va~~al~aGa~iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~ 147 (270)
T 4hb7_A 70 VLPVVEAIVGFDV--KISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEML 147 (270)
T ss_dssp HHHHHHHHTTSSS--EEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHH
T ss_pred HHHHHHHhhcCCC--eEEEECCCHHHHHHHHHhccceeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHH
Confidence 7777788876544 457778888888888889988877 32 22256666521 11 11 1 2
Q ss_pred HHHHHHHHHHHHcCC---eeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 193 ENRLNTLKNVRNVGI---NICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 193 ~~~~~~i~~~~~~G~---~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
+...+.++.+.++|+ ++..+-=+|+|-|.++=++.+..+.++
T Consensus 148 ~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~~ 192 (270)
T 4hb7_A 148 TSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDEL 192 (270)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHHHHHhhHHHH
Confidence 334455778888998 366776677788888755555444443
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.81 Score=40.16 Aligned_cols=189 Identities=14% Similarity=0.098 Sum_probs=110.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeeec
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~~ 174 (348)
.+++.+++.++...+.|..-+-++||. ......+.+.+++..+++. ++. ++..+...+.++.-.++ |.+-|+
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~--~~v~~~ee~~rvv~~i~~~~~~p--isIDT~~~~v~~aAl~a~~Ga~iIN- 96 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGP--AVQDKVSAMEWLVEVTQEVSNLT--LCLDSTNIKAIEAGLKKCKNRAMIN- 96 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC------CHHHHHHHHHHHHHTTCCSE--EEEECSCHHHHHHHHHHCSSCEEEE-
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCC--CCCChHHHHHHHHHHHHHhCCCe--EEEeCCCHHHHHHHHhhCCCCCEEE-
Confidence 688999999999999999999998762 2233567777888877764 444 46778899999888888 987665
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHH----HHHHhcCCCCCeeecccccc
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELI----FQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l----~~l~~l~~~~~~i~~~~l~P 248 (348)
.+... .+.+.+.+..++++|..+..--+ -|..+|.++..+.+ +.+.+.+ +. -..++.
T Consensus 97 ----------dvs~~--~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~G--i~---~~~Iil 159 (262)
T 1f6y_A 97 ----------STNAE--REKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFG--LP---MEDLYI 159 (262)
T ss_dssp ----------EECSC--HHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHT--CC---GGGEEE
T ss_pred ----------ECCCC--cccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CC---cccEEE
Confidence 11111 23444667778888887553323 35555666654443 3344444 21 112344
Q ss_pred cCCCC-CCCCCCCCHHHHHHHHHHHHHHC-CCCcee-----cccc---ccccchhhHHHHHHhCcceeeeC
Q psy14485 249 IKGTP-LYGSSILDPLEFIRTIAVARITM-PTSRIR-----MSAG---RKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 249 ~~gT~-l~~~~~~~~~~~~~~~a~~R~~l-p~~~i~-----~s~g---~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
-||.- +. ...-...+.++.+...|..+ |+..+- .|.| +..+..-....++.+|++..+..
T Consensus 160 DPg~g~~g-~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksfg~~~~~~l~~t~~~~a~~~g~~~~iv~ 229 (262)
T 1f6y_A 160 DPLILPAN-VAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAIAD 229 (262)
T ss_dssp ECCCCCTT-TCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eCCCCcCC-CChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcCCCCHHHHHHHHHHHHHHHHhCCeEEEC
Confidence 45542 22 12223456666666666645 553322 1212 11222334556677888877654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.76 Score=42.00 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC--C--CCC--------------------cccHHHHHHHHHHHHhcCcEEEEecC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW--R--ELK--------------------DRDLDNIENMICEVKKIGLETCLTLG 154 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~--~--~~~--------------------~~~~~~~~~l~~~i~~~~~~i~~~~g 154 (348)
+.+...+.++.+++.|++-+-++.-. + ++. ..+.+++..+.+..++.|+.+..++
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~- 111 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL- 111 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee-
Confidence 57888888888888999998887320 0 110 1356777777777788899886555
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 155 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.+.+.++.|.+.|++.+-++--. + +.+..++.+.+.|.++-. --|+. |.+++...++.+++-
T Consensus 112 -~d~~svd~l~~~~v~~~KI~S~~---~-----------~n~~LL~~va~~gkPviL--stGma-t~~Ei~~Ave~i~~~ 173 (349)
T 2wqp_A 112 -FSRAAALRLQRMDIPAYKIGSGE---C-----------NNYPLIKLVASFGKPIIL--STGMN-SIESIKKSVEIIREA 173 (349)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGG---T-----------TCHHHHHHHHTTCSCEEE--ECTTC-CHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCCCEEEECccc---c-----------cCHHHHHHHHhcCCeEEE--ECCCC-CHHHHHHHHHHHHHc
Confidence 78888999999999988764311 1 112335555556766421 23454 999999999999988
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy14485 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
+ .+.+-++ +|.-| |.+..+-.+..+...+..+|+..|-.| -|..+......|+.+||+-+
T Consensus 174 G--~~iiLlh------c~s~Y--p~~~~~~nL~ai~~lk~~f~~lpVg~s--dHt~G~~~~~AAvAlGA~iI 233 (349)
T 2wqp_A 174 G--VPYALLH------CTNIY--PTPYEDVRLGGMNDLSEAFPDAIIGLS--DHTLDNYACLGAVALGGSIL 233 (349)
T ss_dssp T--CCEEEEE------CCCCS--SCCGGGCCTHHHHHHHHHCTTSEEEEE--CCSSSSHHHHHHHHHTCCEE
T ss_pred C--CCEEEEe------ccCCC--CCChhhcCHHHHHHHHHHCCCCCEEeC--CCCCcHHHHHHHHHhCCCEE
Confidence 7 3222222 33222 111222245666777777765444344 36777778888999999944
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.87 Score=40.21 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=130.1
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC---CHHHHHHHHHhC
Q psy14485 95 TKILSIESVITAAQKAKSDGATRFCMGAAW-RELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVG 168 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~-~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l---~~e~l~~Lk~aG 168 (348)
+.-.+++||.+.+..+.+.|..-+++--=+ ..-+..+.+.+.++++.|++. ++-+.++.|.. .++. ..+.+..
T Consensus 24 ~lPvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~ 102 (275)
T 3no5_A 24 AVPITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLR 102 (275)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGC
T ss_pred CCCCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcC
Confidence 334789999999999999999888775321 111245889999999999973 67777666522 2222 2223445
Q ss_pred CCeeeccCCC-C--HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy14485 169 LDYYNHNLDT-S--PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 169 ~~~i~~g~et-~--~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
-+..++++.| + +.+| ..+++...+.++.+++.|++.... +|- ..++.. +..+.+-+.-..-+.+ .
T Consensus 103 Pe~aSl~~gs~Nf~~~v~-----~N~~~~~~~~~~~~~e~Gi~pE~e-~fd----~g~l~~-~~~l~~~Gl~~~p~~~-~ 170 (275)
T 3no5_A 103 PDMASLATGSVNFPTRVY-----DNPPELVDWLAAEMKTYGIKPEVE-AFD----LSMIFQ-AAAMQAAGAIVGPLHI-Q 170 (275)
T ss_dssp CSEEEEECSCEECSSSEE-----CCCHHHHHHHHHHHHHTTCEEEEE-ESS----THHHHH-HHHHHHHTSSCSSCEE-E
T ss_pred CCEEEecCcccccccccc-----cCCHHHHHHHHHHHHHcCCeeEEE-EEc----HHHHHH-HHHHHHCCCCCCCeeE-E
Confidence 5677766665 3 2222 247888889999999999977655 442 233333 3333333320111111 2
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cccccccchhhHHHHHHhCcceeee-CCeeccCCCCC----
Q psy14485 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-SAGRKEMGETTQAFCFLAGANSIFY-GDKLLTTDNTK---- 319 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s~g~~~l~~~~~~~~l~~GAn~~~~-~~~~~~~~g~~---- 319 (348)
|+. |-+ .-.+.+++.+..++...+.+-++....+ +-|+..+ .....++..|.|.-++ ++++....|..
T Consensus 171 ~vl--Gv~--~g~~~~~~~l~~~~~~l~~~~~~~~w~v~g~Gr~~~--p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sN 244 (275)
T 3no5_A 171 FVM--GIK--NAMPVDREVLEFYVQTLKRLSPDATWTGAGIGRHQL--TMARWSLELGGHCRTGLEDNVRLDKNTLAPSN 244 (275)
T ss_dssp EEE--CCT--TSCCCCHHHHHHHHHHHHHHCTTCEEEEEECGGGHH--HHHHHHHHHTCEEEESTTTCCBSSSSCBCSCH
T ss_pred EEe--CCC--CCCCCCHHHHHHHHHHHHhCCCCCeEEEEecCHhhH--HHHHHHHHhCCCeEEcCCcceeCCCCCCCCCH
Confidence 221 221 1224677776666666544334433332 2344332 3556678888886543 34443445532
Q ss_pred ---chHHHHHHHHcCCCchh
Q psy14485 320 ---TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 320 ---~~~~~~~i~~~G~~p~~ 336 (348)
.+...++++++|++|..
T Consensus 245 a~lV~~~~~i~~~~gr~vAt 264 (275)
T 3no5_A 245 AALVRQVAELCEEYGRPVAT 264 (275)
T ss_dssp HHHHHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 24678899999998764
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.95 Score=40.09 Aligned_cols=222 Identities=12% Similarity=0.135 Sum_probs=131.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc--CcEEEEecCCC----CHHHHHHHHHhCC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML----NENQAYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l----~~e~l~~Lk~aG~ 169 (348)
-.+++||.+.+..+.+.|..-+++-.=+. .-...+.+.+.++++.|++. ++-+.++.|.. .++.+.-+ +..-
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~P 108 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALKP 108 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcCC
Confidence 37899999999999999988877643211 11246889999999999974 67777766532 23455555 5666
Q ss_pred CeeeccCCC-C-HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 170 DYYNHNLDT-S-PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 170 ~~i~~g~et-~-~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
+..++++.| + .+ .+ -..+++...+.++.+++.|+..... +| +..++.. +..+.+-+.-++.-.+..|+
T Consensus 109 e~asl~~gs~Nf~~---~v-~~n~~~~~~~~~~~~~e~Gv~pE~e-~f----d~g~l~~-~~~l~~~Gl~p~~p~~~~~V 178 (282)
T 2y7e_A 109 EMATLNAGTLNFGD---DI-FINHPADIIRLAEAFKQYNVVPEVE-VY----ESGMVDA-VARLIKKGIITQNPLHIQFV 178 (282)
T ss_dssp SEEEEECCCEEETT---EE-ECCCHHHHHHHHHHHHHTTCEEEEE-EC----SHHHHHH-HHHHHHTTSCCCSSCEEEEE
T ss_pred CEEEeccccccccc---cc-ccCCHHHHHHHHHHHHHcCCeEEEE-EE----CHHHHHH-HHHHHHcCCCCCCCeEEEEE
Confidence 888877777 4 22 11 1358899999999999999977655 34 2344333 44444444210111111122
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cccccccchhhHHHHHHhCcceeee-CCeeccCCCCC------
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-SAGRKEMGETTQAFCFLAGANSIFY-GDKLLTTDNTK------ 319 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s~g~~~l~~~~~~~~l~~GAn~~~~-~~~~~~~~g~~------ 319 (348)
- |- ..-.+.+++.+..++.....-.|+....+ +.|+..+ .....++..|.|.-++ ++++....|..
T Consensus 179 l--Gv--~~g~~~~~~~L~~~~~~lp~~~~~~~wsv~g~Gr~q~--p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~ 252 (282)
T 2y7e_A 179 L--GV--PGGMSGKPKNLMYMMEHLKEEIPTATWAVAGIGRWHI--PTSLIAMVTGGHIRCGFEDNIFYHKGVIAESNAQ 252 (282)
T ss_dssp E--CC--TTSCCCCHHHHHHHHHHHHHHSTTCEEEEEECGGGHH--HHHHHHHTTTCEEEESTTTCCEEETTEECSCHHH
T ss_pred E--ec--CCCCCCCHHHHHHHHHhcccccCCCeEEEEecCcchH--HHHHHHHHcCCCeEEccccccCCCCCCCCCCHHH
Confidence 1 21 11134677777777654322122443332 2344332 3455678888886543 23333334421
Q ss_pred -chHHHHHHHHcCCCch
Q psy14485 320 -TNDDSKLLKKLGINTR 335 (348)
Q Consensus 320 -~~~~~~~i~~~G~~p~ 335 (348)
.+...++++++|++|.
T Consensus 253 lV~~~~~i~~~lgr~vA 269 (282)
T 2y7e_A 253 LVARLARIAKEIGRPLA 269 (282)
T ss_dssp HHHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 2567888999999865
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.72 E-value=0.26 Score=44.07 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=89.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++.+++.++...+.|..-|-++|..+.|. ....+++..+++.+++. ++.+ +..+...+.++.-.++|.+
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpi--SIDT~~~~V~~aAl~aGa~ 137 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPI--SIDTYKAEVAKQAIEAGAH 137 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCE--EEECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceE--EEeCCCHHHHHHHHHcCCC
Confidence 5789999999999999999998887433231 12344566666777763 5555 5666788888888888888
Q ss_pred eee-ccCCC-CHHHHhcc----------C-CCC-C--------HHHHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHH
Q psy14485 171 YYN-HNLDT-SPKLYGDI----------I-STR-D--------YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRA 225 (348)
Q Consensus 171 ~i~-~g~et-~~e~l~~i----------~-~~~-~--------~~~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~ 225 (348)
-|+ ++-+. .+++++.+ + ++. . .+...+.++.+.++|++ +..+--+|++.+.++-.
T Consensus 138 iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~ 217 (297)
T 1tx2_A 138 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 217 (297)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHH
Confidence 775 33333 45554411 1 110 1 24455667788889985 77887778888888766
Q ss_pred HHHHHHHhcC
Q psy14485 226 ELIFQLANLN 235 (348)
Q Consensus 226 ~~l~~l~~l~ 235 (348)
+.++.+..+.
T Consensus 218 ~ll~~l~~l~ 227 (297)
T 1tx2_A 218 EAMRNLEQLN 227 (297)
T ss_dssp HHHHTGGGGG
T ss_pred HHHHHHHHHH
Confidence 7766666553
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.4 Score=43.31 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=96.0
Q ss_pred CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHH
Q psy14485 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLD 133 (348)
Q Consensus 60 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~ 133 (348)
.+..+.+++|+ |+- +|+. . .+| .+++.+++.++.+.+.|..-|=++|..+.|.. ...+
T Consensus 8 ~~~~iMGIlNv-TPD--------SFsd---g--g~~--~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~ 71 (314)
T 2vef_A 8 AKTVICGIINV-TPD--------SFSD---G--GQF--FALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQ 71 (314)
T ss_dssp CCCEEEEEEEC-CC------------------------CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHH
T ss_pred CCceEEEEEeC-CCC--------CCCC---C--CCC--CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHH
Confidence 45677888888 543 3332 1 234 57899999999999999999988874333321 3456
Q ss_pred HHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeee-ccCCC-CHHHHhc----------cCC-----CCC----
Q psy14485 134 NIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGD----------IIS-----TRD---- 191 (348)
Q Consensus 134 ~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~g~et-~~e~l~~----------i~~-----~~~---- 191 (348)
++..+++.+++. ++.+ +..+...+.++.-.++|.+-|+ ++-.. .+++++. ++. +.+
T Consensus 72 Rv~pvI~~l~~~~~vpi--SIDT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~ 149 (314)
T 2vef_A 72 RVVPVIKAIRKESDVLI--SIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSL 149 (314)
T ss_dssp HHHHHHHHHHHHCCCEE--EEECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTT
T ss_pred HHHHHHHHHHhhCCceE--EEeCCCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccc
Confidence 777777888764 5554 6677888888888888887776 33322 3444431 110 011
Q ss_pred -----------------------HHH-----HHHHHHHHHHcCC---eeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 192 -----------------------YEN-----RLNTLKNVRNVGI---NICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 192 -----------------------~~~-----~~~~i~~~~~~G~---~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.++ ..+.++.+.++|+ ++..+--+|++-|.++-++.++.+.++
T Consensus 150 ~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l 223 (314)
T 2vef_A 150 IFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKL 223 (314)
T ss_dssp TSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHH
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHh
Confidence 222 2345677888998 467776778878887766666665554
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.56 Score=43.44 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC--C--CCC---------------------cccHHHHHHHHHHHHhcCcEEEEec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW--R--ELK---------------------DRDLDNIENMICEVKKIGLETCLTL 153 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~--~--~~~---------------------~~~~~~~~~l~~~i~~~~~~i~~~~ 153 (348)
+.+...+.++.+++.|++-|-++.-. + ++. ..+.+++.++.+..++.|+.+..+
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~st- 120 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLST- 120 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECB-
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEc-
Confidence 67888888888888999998887541 1 121 123455666666666678777533
Q ss_pred CCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHh
Q psy14485 154 GMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 233 (348)
Q Consensus 154 g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~ 233 (348)
..+.+.++.|.+.|++.+-++-- ++ +.+..++.+.+.|.++-. --|+. |.+++...++.+++
T Consensus 121 -pfD~~svd~l~~~~vd~~KIgS~---~~-----------~N~pLL~~va~~gKPViL--StGma-Tl~Ei~~Ave~i~~ 182 (385)
T 1vli_A 121 -VCDEGSADLLQSTSPSAFKIASY---EI-----------NHLPLLKYVARLNRPMIF--STAGA-EISDVHEAWRTIRA 182 (385)
T ss_dssp -CCSHHHHHHHHTTCCSCEEECGG---GT-----------TCHHHHHHHHTTCSCEEE--ECTTC-CHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHhcCCCEEEECcc---cc-----------cCHHHHHHHHhcCCeEEE--ECCCC-CHHHHHHHHHHHHH
Confidence 47788888888888887776431 11 112345555556776421 23444 99999999999998
Q ss_pred cCCCCCeeec-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc-hhhHHHHHHhCccee
Q psy14485 234 LNPYPESVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG-ETTQAFCFLAGANSI 306 (348)
Q Consensus 234 l~~~~~~i~~-~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~-~~~~~~~l~~GAn~~ 306 (348)
-+ ...+.+ ....-+| ||.. +-.+..+...+..+|+..|-.| -|..+ ......|+.+||+.+
T Consensus 183 ~G--n~~iiLlhc~s~YP-tp~~-------~~nL~aI~~Lk~~f~~lpVG~S--dHt~G~~~~~~AAvAlGA~iI 245 (385)
T 1vli_A 183 EG--NNQIAIMHCVAKYP-APPE-------YSNLSVIPMLAAAFPEAVIGFS--DHSEHPTEAPCAAVRLGAKLI 245 (385)
T ss_dssp TT--CCCEEEEEECSSSS-CCGG-------GCCTTHHHHHHHHSTTSEEEEE--ECCSSSSHHHHHHHHTTCSEE
T ss_pred CC--CCcEEEEeccCCCC-CChh-------hcCHHHHHHHHHHcCCCCEEeC--CCCCCchHHHHHHHHcCCCEE
Confidence 87 433332 2222122 1221 2234556666666765444333 36677 778888999999955
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=1.5 Score=38.70 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
.+.++.+.+.|+..+.+.+.. ..+.--.+.++.+++ .++++-..-..+++..++..+.+|+|.|.++...
T Consensus 75 ~~~A~~y~~~GA~~isvltd~-----~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~---- 145 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQ-----RRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA---- 145 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCG-----GGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG----
T ss_pred HHHHHHHHHcCCCEEEEecCh-----hhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc----
Confidence 344556677899999776531 112222344555554 4666655555678878999999999999986533
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCH
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
.+.++..+.++.+++.|+.+-..+ .|.+++. .+.+++ ++.++++.. ..+.+ .++.
T Consensus 146 -------l~~~~l~~l~~~a~~lGl~~lvev-----~t~ee~~----~A~~~G--ad~IGv~~r---~l~~~----~~dl 200 (272)
T 3qja_A 146 -------LEQSVLVSMLDRTESLGMTALVEV-----HTEQEAD----RALKAG--AKVIGVNAR---DLMTL----DVDR 200 (272)
T ss_dssp -------SCHHHHHHHHHHHHHTTCEEEEEE-----SSHHHHH----HHHHHT--CSEEEEESB---CTTTC----CBCT
T ss_pred -------CCHHHHHHHHHHHHHCCCcEEEEc-----CCHHHHH----HHHHCC--CCEEEECCC---ccccc----ccCH
Confidence 123455566788888898753321 4556543 334567 888888742 21222 1222
Q ss_pred HHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhh
Q psy14485 263 LEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~ 337 (348)
+...++ +-.+|. ..+-+.+|-.+ ++.......+||+.++.|..+... ..+.+..+.+.+.|..|..+
T Consensus 201 ~~~~~l----~~~v~~~~pvVaegGI~t--~edv~~l~~~GadgvlVGsal~~a--~dp~~~~~~l~~~~~~~~~~ 268 (272)
T 3qja_A 201 DCFARI----APGLPSSVIRIAESGVRG--TADLLAYAGAGADAVLVGEGLVTS--GDPRAAVADLVTAGTHPSCP 268 (272)
T ss_dssp THHHHH----GGGSCTTSEEEEESCCCS--HHHHHHHHHTTCSEEEECHHHHTC--SCHHHHHHHHHTTTTCSCCC
T ss_pred HHHHHH----HHhCcccCEEEEECCCCC--HHHHHHHHHcCCCEEEEcHHHhCC--CCHHHHHHHHHhhhcCCcCC
Confidence 222222 223553 22222333221 333455678999999988765332 24566777777788777654
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=1.5 Score=37.85 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
+..+.++.+.+.|++.+.+.+... .........++++.+++ .++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~--~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~-- 107 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISA--THEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-- 107 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCS--STTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCc--cccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH--
Confidence 334455566677999888875421 11233456677788876 4788888889999999999999999999876522
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE-------eee-cCC---CHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGG-------IIG-LSE---SRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~-------i~G-lge---t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.. .+...+..+.....-+.+..+. .+- .|. +..+..+.+..+.+++ +..+.++... .
T Consensus 108 --l~~------p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~-~ 176 (252)
T 1ka9_F 108 --VRR------PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSMD-R 176 (252)
T ss_dssp --HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEETT-T
T ss_pred --HhC------cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcC--CCEEEEeccc-C
Confidence 221 1222222332211112223222 111 121 1112334455556676 6665544322 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHH
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
.|+. ..++. ..+...+... +..+-+++|-.+ .+.....+.+||+.++.|.-+ ....-...+..+.+++
T Consensus 177 ~g~~----~g~~~----~~i~~l~~~~-~ipvia~GGI~~--~~d~~~~~~~Gadgv~vgsal-~~~~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 177 DGTK----EGYDL----RLTRMVAEAV-GVPVIASGGAGR--MEHFLEAFQAGAEAALAASVF-HFGEIPIPKLKRYLAE 244 (252)
T ss_dssp TTTC----SCCCH----HHHHHHHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEESHHH-HTTSSCHHHHHHHHHH
T ss_pred CCCc----CCCCH----HHHHHHHHHc-CCCEEEeCCCCC--HHHHHHHHHCCCHHHHHHHHH-HcCCCCHHHHHHHHHH
Confidence 2322 12232 2333333333 222333333222 122233457899999887644 2222256778888888
Q ss_pred cCCCc
Q psy14485 330 LGINT 334 (348)
Q Consensus 330 ~G~~p 334 (348)
.|..+
T Consensus 245 ~~~~~ 249 (252)
T 1ka9_F 245 KGVHV 249 (252)
T ss_dssp TTCCB
T ss_pred CCCCc
Confidence 88754
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.22 Score=45.02 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=86.9
Q ss_pred CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-----cccHHH
Q psy14485 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-----DRDLDN 134 (348)
Q Consensus 60 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-----~~~~~~ 134 (348)
++..+.+++|+ |+- +|+. . .+| .+.+.+++.++++.+.|..-|=++|..+.|. ....++
T Consensus 40 ~~~~vMGIlNv-TPD--------SFsd---g--g~~--~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~R 103 (318)
T 2vp8_A 40 DRALIMAIVNR-TPD--------SFYD---K--GAT--FSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITR 103 (318)
T ss_dssp SSCEEEEEEC------------------------------CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHH
T ss_pred CCcEEEEEEeC-CCC--------cccC---C--Ccc--CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHH
Confidence 44566777777 432 2332 1 233 5789999999999999999988876422221 123445
Q ss_pred HHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeee-ccCCCCHHHHhc----------cCC----CCC------
Q psy14485 135 IENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYN-HNLDTSPKLYGD----------IIS----TRD------ 191 (348)
Q Consensus 135 ~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~g~et~~e~l~~----------i~~----~~~------ 191 (348)
+..+++.+++. ++.+ +..+...+.++.--++|.+-|+ ++-+..+++++. ++. ..+
T Consensus 104 v~pvI~~l~~~~~~vpI--SIDT~~~~VaeaAl~aGa~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~ 181 (318)
T 2vp8_A 104 LVPFIEWLRGAYPDQLI--SVDTWRAQVAKAACAAGADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVS 181 (318)
T ss_dssp HHHHHHHHHHHSTTCEE--EEECSCHHHHHHHHHHTCCEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------
T ss_pred HHHHHHHHHhhCCCCeE--EEeCCCHHHHHHHHHhCCCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccc
Confidence 66667777764 5554 6777888888888888887665 222223444431 111 111
Q ss_pred H------------HHHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 192 Y------------ENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 192 ~------------~~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
| +...+.++.+.++|+. +..+--+|++.+.++-.+.++.+.++
T Consensus 182 y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 182 YGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADL 239 (318)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHH
Confidence 1 3334557777788884 77776677766666656665555544
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=1.3 Score=38.39 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEec--------CCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--------GMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~--------g~l~~e~l~~Lk~aG~ 169 (348)
+++..+.+.++.+..+ ++.+-|++|. ....+.+.+.+.++..++.++.++.-. -..-++.++..++.|+
T Consensus 23 lg~~~~~d~Le~~g~y-ID~lKfg~Gt--~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf 99 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGDY-IDFVKFGWGT--SAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGF 99 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTG--GGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhhhh-cceEEecCce--eeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcCcHHHHHHHHHHcCC
Confidence 5676666665544333 8888998883 234566789999999999888886311 1245678999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-------CCCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------SESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-------get~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.|. .-+.+++.+.++.+++.|+.+-+.+ |- -.+++++++.++.-.+.+ .+.|-
T Consensus 100 ~~iEiS~G~i---------~l~~~~~~~~I~~~~~~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAG--A~~Vi 166 (251)
T 1qwg_A 100 EAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG--ADYVI 166 (251)
T ss_dssp CEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT--CSEEE
T ss_pred CEEEECCCcc---------cCCHHHHHHHHHHHHHCCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCC--CcEEE
Confidence 9999876652 2478899999999999999875442 33 247788999888877777 66654
Q ss_pred c
Q psy14485 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 167 i 167 (251)
T 1qwg_A 167 I 167 (251)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.19 Score=43.21 Aligned_cols=194 Identities=13% Similarity=0.082 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCC-HHHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~-~e~l~~Lk~aG~~~i~~ 174 (348)
+...+.++++.+.+.|++.+++. +|..-| .. ..-.++++.+++. +..+.++.-..+ +..++.+.++|+|.+.+
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-~~--~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-NI--TIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-CB--CBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCc-ch--hhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEE
Confidence 34556666677778899876553 342212 11 1223777777763 334333322222 34689999999999998
Q ss_pred cCC--CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 175 NLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 175 g~e--t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
..| +.+ ...+.++.+++.|+.+...+ .. .|+.+.. +.+.+ + .+.+.+....|.-|.
T Consensus 92 h~e~~~~~-------------~~~~~~~~i~~~g~~~gv~~--~p-~t~~e~~---~~~~~-~--~D~v~~msv~pg~gg 149 (230)
T 1tqj_A 92 HVEHNASP-------------HLHRTLCQIRELGKKAGAVL--NP-STPLDFL---EYVLP-V--CDLILIMSVNPGFGG 149 (230)
T ss_dssp ECSTTTCT-------------THHHHHHHHHHTTCEEEEEE--CT-TCCGGGG---TTTGG-G--CSEEEEESSCC----
T ss_pred Ccccccch-------------hHHHHHHHHHHcCCcEEEEE--eC-CCcHHHH---HHHHh-c--CCEEEEEEeccccCC
Confidence 887 421 23356777888888765443 22 3443332 22222 2 677777777654332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHH
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~ 328 (348)
....+ . .++.+...|.+.+ +..|.+-+|- ..+.......+|||.++.|..+... ..+.+..+.++
T Consensus 150 --q~~~~-~---~~~~i~~lr~~~~~~~~~~~I~v~GGI---~~~~~~~~~~aGad~vvvGSai~~a--~d~~~~~~~l~ 218 (230)
T 1tqj_A 150 --QSFIP-E---VLPKIRALRQMCDERGLDPWIEVDGGL---KPNNTWQVLEAGANAIVAGSAVFNA--PNYAEAIAGVR 218 (230)
T ss_dssp --CCCCG-G---GHHHHHHHHHHHHHHTCCCEEEEESSC---CTTTTHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHH
T ss_pred --ccCcH-H---HHHHHHHHHHHHHhcCCCCcEEEECCc---CHHHHHHHHHcCCCEEEECHHHHCC--CCHHHHHHHHH
Confidence 22222 2 2233333333332 3334444432 1233344678999999888655432 22444444444
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=94.86 E-value=1.9 Score=38.12 Aligned_cols=219 Identities=12% Similarity=0.068 Sum_probs=130.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc--CcEEEEecCCC---CHHHHHHHHHhCCC
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVGLD 170 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l---~~e~l~~Lk~aG~~ 170 (348)
-.+++||.+.+.++.+.|..-+++-.=+. .-...+.+.+.++++.|++. ++-+.++.|.. .++.+.-+ +..-+
T Consensus 30 PvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe 108 (284)
T 3chv_A 30 PITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKPD 108 (284)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCCS
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCCC
Confidence 37899999999999999999887754211 11246889999999999973 67777765422 23444444 45667
Q ss_pred eeeccCCC-C-HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC--CCCeeecccc
Q psy14485 171 YYNHNLDT-S-PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP--YPESVPINNL 246 (348)
Q Consensus 171 ~i~~g~et-~-~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~--~~~~i~~~~l 246 (348)
..++++.| + . +.+ -..+++...+.++.+++.|+..... +| +..++.. +..+.+-+. .+..+.+..=
T Consensus 109 ~aSl~~Gs~Nf~---~~v-~~n~~~~~~~~~~~~~e~Gv~pE~e-~f----d~g~l~~-~~~l~~~Gll~~p~~~~~vlG 178 (284)
T 3chv_A 109 MASLSVGSNNFP---SRV-YENPPDLVDWLAAQMRSYRVTPEIE-AF----DLSHILR-AIDMHGRGLLYGKLYVQFVMG 178 (284)
T ss_dssp EEEECCSCEECS---SSE-ECCCHHHHHHHHHHHHHHTCEEEEE-ES----SHHHHHH-HHHHHHTTCSCSSCEEEEEEC
T ss_pred EEEecCcccccC---Ccc-ccCCHHHHHHHHHHHHHcCCEEEEE-EE----CHHHHHH-HHHHHHcCCCCCCceEEEEEe
Confidence 77777776 3 2 111 1247888999999999999977655 33 2333333 344444442 1222222211
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cccccccchhhHHHHHHhCcceeee-CCeeccCCCCC-----
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-SAGRKEMGETTQAFCFLAGANSIFY-GDKLLTTDNTK----- 319 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s~g~~~l~~~~~~~~l~~GAn~~~~-~~~~~~~~g~~----- 319 (348)
.+| -.+.+++.+..++.....-.|.....+ +.|+..+ .....++..|.|.-++ ++++....|..
T Consensus 179 --v~~-----g~~~~~~~L~~~~~~~p~~~~~~~ws~~g~Gr~q~--p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa 249 (284)
T 3chv_A 179 --VKN-----AMPADREVFDFYVRMMRTRAPQAEWCAAGIGANQL--TVNEWAIAAGGHTRTGLEDNIRLDRQTLAPSNA 249 (284)
T ss_dssp --CTT-----SCCCCHHHHHHHHHHHHHHCTTSEEEEEECTTHHH--HHHHHHHHTTCEEEESTTTCCBSSSSCBCCCHH
T ss_pred --cCC-----CCCCCHHHHHHHHHhccCCCCCceEEEEecCcchh--HHHHHHHHcCCCeEEecccccCCCCCCCCCCHH
Confidence 121 135677777777655422111133322 2334332 3455688889886543 34443445532
Q ss_pred --chHHHHHHHHcCCCch
Q psy14485 320 --TNDDSKLLKKLGINTR 335 (348)
Q Consensus 320 --~~~~~~~i~~~G~~p~ 335 (348)
.+...++++++|++|.
T Consensus 250 ~lV~~~~~i~~~lgr~vA 267 (284)
T 3chv_A 250 ALVRRSVELCDKYQRPVA 267 (284)
T ss_dssp HHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 2466888999999865
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.85 E-value=2.1 Score=38.46 Aligned_cols=224 Identities=15% Similarity=0.136 Sum_probs=130.8
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHhc--CcEEEEecC------C--------
Q psy14485 94 ATKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKI--GLETCLTLG------M-------- 155 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g------~-------- 155 (348)
++.-.+++||.+.+.++.+.|..-+++-.=+ +.-...+.+.+.++++.|++. ++-+.++.| .
T Consensus 41 P~lPvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TTg~gg~~~g~~~~p~~~ 120 (316)
T 3c6c_A 41 PSMPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKA 120 (316)
T ss_dssp TTCCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCccccccCcccCcccc
Confidence 3334789999999999999999988775421 111346889999999999974 666666655 1
Q ss_pred -------CCHHHHHHHHHhCCCeeeccCCC-CH--HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHH
Q psy14485 156 -------LNENQAYRLKKVGLDYYNHNLDT-SP--KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRA 225 (348)
Q Consensus 156 -------l~~e~l~~Lk~aG~~~i~~g~et-~~--e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~ 225 (348)
-.++.+.-+.+..-+..++++.| +- ..-+.+ -..+++...+..+.+++.|++.... +| +..++.
T Consensus 121 ~~~~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v-~~n~~~~i~~~~~~~~e~Gv~pE~e-~f----d~g~l~ 194 (316)
T 3c6c_A 121 LPESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFV-YLNTTRTLRAMARRFQELGIKPELE-VF----SPGDIL 194 (316)
T ss_dssp CTTCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEE-ECCCHHHHHHHHHHHHHHTCEEEEE-ES----SHHHHH
T ss_pred ccccccCCHHHHHHHHHhcCCCeEEeccccccccCCCCcee-ecCCHHHHHHHHHHHHHcCCeEEEE-EE----CHHHHH
Confidence 23456666666677888887776 31 100111 1358889999999999999977655 33 234433
Q ss_pred HHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Ccee-ccccccccchhhHHHHHHhCc
Q psy14485 226 ELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIR-MSAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 226 ~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~-~s~g~~~l~~~~~~~~l~~GA 303 (348)
. +..+.+-+. .+.-.+..|+- |-+. -.+.+++.+..++.. +|. .... .+.|+..+ .....++..|.
T Consensus 195 ~-~~~l~~~Gl-l~~p~~~~~vl--Gv~~--g~p~~p~~L~~~~~~----lp~~~~wsv~g~Gr~q~--p~~~~A~~~GG 262 (316)
T 3c6c_A 195 F-GKQLIEEGL-IDGVPLFQMVL--GVLW--GAPASTETMIYQRNL----IPANAQWAAFGIGRDQM--PMMAQAALLGG 262 (316)
T ss_dssp H-HHHHHHTTC-SCSSCEEEEEC--SCTT--SCCSCHHHHHHHHTT----SCTTSEEEEECCGGGHH--HHHHHHHHHTC
T ss_pred H-HHHHHHcCC-CCCCceEEEEE--ecCC--CCCCCHHHHHHHHHh----cCCCCeEEEEecCcchH--HHHHHHHHcCC
Confidence 3 444444442 11111111211 2111 123566666655432 554 3322 23444332 34555788888
Q ss_pred ceeee-CCeeccCCCC---C---chHHHHHHHHcCCCch
Q psy14485 304 NSIFY-GDKLLTTDNT---K---TNDDSKLLKKLGINTR 335 (348)
Q Consensus 304 n~~~~-~~~~~~~~g~---~---~~~~~~~i~~~G~~p~ 335 (348)
|.-++ ++++....|. . .+...++++++|++|.
T Consensus 263 hvRVGlEDnl~~~~G~~AsNa~lV~~a~~i~~~lGr~vA 301 (316)
T 3c6c_A 263 NVRVGLEDNLYLSRGVFATNGQLVERARTVIEHLGMSVA 301 (316)
T ss_dssp BEEESTTTCCEEETTEECCHHHHHHHHHHHHHHTTCEEC
T ss_pred CeEEccccccCCCCCcCCCHHHHHHHHHHHHHHcCCCCC
Confidence 86543 2333223332 1 2567888999999865
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.51 Score=46.65 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=125.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCC---HHHHHHHHHhCCCee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLN---ENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~---~e~l~~Lk~aG~~~i 172 (348)
.++.++-++.++.+.+.|++.|-.+.. ..+..+.+.+..+.+... ..+..+++-.-... +..++.++.+|.++|
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGfP--~asp~D~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a~~~~V 166 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGFP--SASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIV 166 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECT--TTCHHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCChhHHHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcCCCCEE
Confidence 378999999999999999999866432 112223333333333211 01445543211111 233556677888889
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHH----HHHHHHHcCC---eeeEeEeeec----CCCHHHHHHHHHHHHhcCC-CCCe
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLN----TLKNVRNVGI---NICCGGIIGL----SESRDQRAELIFQLANLNP-YPES 240 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~----~i~~~~~~G~---~i~~~~i~Gl----get~e~~~~~l~~l~~l~~-~~~~ 240 (348)
.+.+-+++-..+. .-+.+.++.++ .++.+++.+- .+..++.|+. .-+++.+++.++.+.+.+. +++.
T Consensus 167 hif~stSd~h~~~-~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~~Gad~ 245 (644)
T 3hq1_A 167 HFYNSTSILQRRV-VFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPER 245 (644)
T ss_dssp EEEEECCHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHCCCSSS
T ss_pred EEEecCCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 8877776443332 22445665554 4455555542 2233444544 1356777788888777531 1331
Q ss_pred -eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e--CC
Q psy14485 241 -VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--GD 310 (348)
Q Consensus 241 -i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~~ 310 (348)
+.++ .|.|- ...++.++.+++...+..+|+. .+.++..-|| +..-....|+.+||+.+= . |+
T Consensus 246 ~~~I~----LpDTv----G~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vdgti~G~GE 317 (644)
T 3hq1_A 246 PIIFN----LPATV----EMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE 317 (644)
T ss_dssp CEEEE----EEESS----CCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS
T ss_pred eeEEE----ecCCC----cccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEEecCCCCCc
Confidence 1111 23342 3467888889998888888862 3444432233 223345668999999982 1 22
Q ss_pred eeccCCCCCchHHHHHHHHcCCCc
Q psy14485 311 KLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 311 ~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+...+++.-.+...|+.+
T Consensus 318 ---RaGNa~LE~lv~~L~~~Gi~t 338 (644)
T 3hq1_A 318 ---RTGNVCLVTLGLNLFSRGVDP 338 (644)
T ss_dssp ---TTCBCBHHHHHHHHHTTTCCC
T ss_pred ---cccCccHHHHHHHHHhcccCC
Confidence 122333466666677777764
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.22 Score=42.49 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cCCC---C-HHHHHHHHHhCCCee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML---N-ENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g~l---~-~e~l~~Lk~aG~~~i 172 (348)
..+.+.+.++.+++.|+..|.|+--. .....+.+.+.++++... +++++.+ .... + .+.++.|.+.|++||
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~Lt-~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rI 150 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGILT-SNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRI 150 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC-TTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC-CCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHcCCCEE
Confidence 45777788888999999999996542 223478889999988776 4555554 2222 2 466899999999998
Q ss_pred ec-cCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy14485 173 NH-NLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 173 ~~-g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
.- |-+.+ .+..+-++.++.+.+ ++- ...+|.|-|=+.+.+.+. +...+ +..+..+.++-.+
T Consensus 151 LTSG~~~~----------~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l---~~~tG--v~e~H~s~i~~~~ 213 (224)
T 2bdq_A 151 LLHGSSNG----------EPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYI---CQETG--VKQAHGTRITQMA 213 (224)
T ss_dssp EECSCSSC----------CCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHH---HHHHT--CCEEEETTCC---
T ss_pred ECCCCCCC----------CcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHH---HHhhC--CCEEccccccCCC
Confidence 73 22211 112222333333322 222 245677766555554443 23456 6777778888889
Q ss_pred CCCCCC
Q psy14485 251 GTPLYG 256 (348)
Q Consensus 251 gT~l~~ 256 (348)
|+|++.
T Consensus 214 ~~~~~~ 219 (224)
T 2bdq_A 214 GDPLEH 219 (224)
T ss_dssp ------
T ss_pred CCcchh
Confidence 999864
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.78 Score=39.21 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEE--EecCCCCHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETC--LTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+...+.+.++.+.+.|++.+.+. .|.+-+. . ..-.+.++.+++. ...+. +-... +.+.++.+.++|+|.+.
T Consensus 17 d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~-~--~~~~~~~~~lr~~~~~~~~v~lmv~d-~~~~i~~~~~agad~v~ 92 (228)
T 1h1y_A 17 DFANLAAEADRMVRLGADWLHMDIMDGHFVPN-L--TIGAPVIQSLRKHTKAYLDCHLMVTN-PSDYVEPLAKAGASGFT 92 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-B--CBCHHHHHHHHTTCCSEEEEEEESSC-GGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc-h--hhCHHHHHHHHhhcCCcEEEEEEecC-HHHHHHHHHHcCCCEEE
Confidence 34556666677778899887554 3322121 1 1123666666653 22322 22221 24468889999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc--CCCCCeeecccccccCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL--NPYPESVPINNLVQIKG 251 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l--~~~~~~i~~~~l~P~~g 251 (348)
+..+..++. +.+.++.+++.|+.+... +. ..|+.+. +..+... + ++.+.+....|..+
T Consensus 93 vH~~~~~~~------------~~~~~~~i~~~g~~igv~--~~-p~t~~e~---~~~~~~~~~~--~d~vl~~sv~pg~~ 152 (228)
T 1h1y_A 93 FHIEVSRDN------------WQELIQSIKAKGMRPGVS--LR-PGTPVEE---VFPLVEAENP--VELVLVMTVEPGFG 152 (228)
T ss_dssp EEGGGCTTT------------HHHHHHHHHHTTCEEEEE--EC-TTSCGGG---GHHHHHSSSC--CSEEEEESSCTTCS
T ss_pred ECCCCcccH------------HHHHHHHHHHcCCCEEEE--Ee-CCCCHHH---HHHHHhcCCC--CCEEEEEeecCCCC
Confidence 655442111 135567777888776522 22 2343332 2333343 4 67887777665322
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. .... ...++.+...|...++..+.+.+|- +.+.......+|||.++.|..+.
T Consensus 153 g--~~~~----~~~l~~i~~~~~~~~~~pi~v~GGI---~~~ni~~~~~aGaD~vvvGsai~ 205 (228)
T 1h1y_A 153 G--QKFM----PEMMEKVRALRKKYPSLDIEVDGGL---GPSTIDVAASAGANCIVAGSSIF 205 (228)
T ss_dssp S--CCCC----GGGHHHHHHHHHHCTTSEEEEESSC---STTTHHHHHHHTCCEEEESHHHH
T ss_pred c--ccCC----HHHHHHHHHHHHhcCCCCEEEECCc---CHHHHHHHHHcCCCEEEECHHHH
Confidence 1 1111 1233445556666655445555542 22334456778999998886553
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.73 Score=41.68 Aligned_cols=198 Identities=9% Similarity=0.033 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--------cccHHHHHHHHHHHHhcCcEEEE--ecCCCCHHHHHHH---
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--------DRDLDNIENMICEVKKIGLETCL--TLGMLNENQAYRL--- 164 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--------~~~~~~~~~l~~~i~~~~~~i~~--~~g~l~~e~l~~L--- 164 (348)
++.++.++.++.+.+.|+..|=++... +|. ..+.+.+..+-+ + .+..+.+ .......+.++.+
T Consensus 21 ~~~~~k~~ia~~L~~aGv~~IEvg~~~-~p~~~f~~~~~~~~~e~l~~i~~-~--~~~~~~~L~r~~~~~~~dv~~~~~a 96 (320)
T 3dxi_A 21 FNSKIVDAYILAMNELPIDYLEVGYRN-KPSKEYMGKFGYTPVSVLKHLRN-I--STKKIAIMLNEKNTTPEDLNHLLLP 96 (320)
T ss_dssp CCHHHHHHHHHHHHTTTCCEEEEEECC-SCCSSCCCHHHHCCHHHHHHHHH-H--CCSEEEEEEEGGGCCGGGHHHHHGG
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeccc-CCccccccccccChHHHHHHHhh-c--cCCeEEEEecCCCCChhhHHHHHHh
Confidence 789999999999999999998665321 111 012333333322 2 3444432 2222223344444
Q ss_pred HHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCC-CHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 165 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSE-SRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 165 k~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glge-t~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
.++|++.+.+.. ..+..+...+.++.+++.|+.+...+++.-+- +.+.++.. +.++..+++.+.
T Consensus 97 ~~~Gvd~~ri~~-----------~~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~---~~~~~~G~~~i~- 161 (320)
T 3dxi_A 97 IIGLVDMIRIAI-----------DPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSK---LKAIDKIADLFC- 161 (320)
T ss_dssp GTTTCSEEEEEE-----------CGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGG---GGGGTTTCSEEE-
T ss_pred hhcCCCEEEEEe-----------cHHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHH---HHHhhCCCCEEE-
Confidence 346888776542 11247888999999999999987777663222 22222222 222221133322
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccC
Q psy14485 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTT 315 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~ 315 (348)
.++|- ...+|.+..+++...|..+| ..+.+- -|+ +..-....++.+||+.+ +. |+ .+
T Consensus 162 -----l~Dt~----G~~~P~~~~~lv~~l~~~~~-~~i~~H--~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~---~~ 226 (320)
T 3dxi_A 162 -----MVDSF----GGITPKEVKNLLKEVRKYTH-VPVGFH--GHDNLQLGLINSITAIDDGIDFIDATITGMGR---GA 226 (320)
T ss_dssp -----EECTT----SCCCHHHHHHHHHHHHHHCC-SCEEEE--CBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TT
T ss_pred -----ECccc----CCCCHHHHHHHHHHHHHhCC-CeEEEE--eCCCCccHHHHHHHHHHhCCCEEEEeccccCC---cc
Confidence 23332 23578889999998888776 222221 122 22334556899999998 11 22 12
Q ss_pred CCCCchHHHHHHHH
Q psy14485 316 DNTKTNDDSKLLKK 329 (348)
Q Consensus 316 ~g~~~~~~~~~i~~ 329 (348)
.+...+++..+++.
T Consensus 227 GN~~~E~lv~~L~~ 240 (320)
T 3dxi_A 227 GNLKMELLLTYLNK 240 (320)
T ss_dssp CBCBHHHHHHHHHH
T ss_pred cchhHHHHHHHHHh
Confidence 33445777777776
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=94.14 E-value=1.6 Score=40.38 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEE--ecCCCCH-----HHHHHHHHhCCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCL--TLGMLNE-----NQAYRLKKVGLD 170 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~g~l~~-----e~l~~Lk~aG~~ 170 (348)
+.++..+.++.+.+.|+++|+.+=- .+.......+.+.++++..++.++++.+ ++..+.. +.+..+++.|++
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~ 118 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGAD 118 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 5677788888899999999754321 1111123457788888888888888775 5655544 678899999999
Q ss_pred eeeccCCCC-HHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCC-eeeccccc
Q psy14485 171 YYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYPE-SVPINNLV 247 (348)
Q Consensus 171 ~i~~g~et~-~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~-~i~~~~l~ 247 (348)
.+-+...-+ .++ .+..+. .|++|....-. +.++ +..+.+.+...+ ....+.|.
T Consensus 119 gLRLD~Gf~~~ei----------------a~ls~n~~glkIeLNASt----~~~~----l~~l~~~~~n~~~l~acHNFY 174 (385)
T 1x7f_A 119 GIRLDVGFDGLTE----------------AKMTNNPYGLKIELNVSN----DIAY----LENILSHQANKSALIGCHNFY 174 (385)
T ss_dssp EEEESSCCSSHHH----------------HHHTTCTTCCEEEEETTS----CSSH----HHHHTTSSCCGGGEEEECCCB
T ss_pred EEEEcCCCCHHHH----------------HHHhcCCCCCEEEEeCcC----CHHH----HHHHHHcCCChHHeEEeeccC
Confidence 887644322 221 111122 35555444221 2222 233334441112 34667777
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
|.|.|-| +.+.+.+.-..++.
T Consensus 175 Pr~~TGL------s~~~f~~~n~~~k~ 195 (385)
T 1x7f_A 175 PQKFTGL------PYDYFIRCSERFKK 195 (385)
T ss_dssp CSTTCSB------CHHHHHHHHHHHHH
T ss_pred CCCCCCC------CHHHHHHHHHHHHH
Confidence 7777754 55666666666554
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=94.00 E-value=1.9 Score=37.01 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCCEEEEecc--CCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 102 SVITAAQKAKSDGATRFCMGAA--WRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg--~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+..+.++.+.+.|++.+++.+- ...+. . .. ++++.+++ .++++.++.+..+++.++.+.++|++.+.++.++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~-~---~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG-D---NR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC-C---CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC-C---hH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH
Confidence 4455556677889999988642 11111 1 22 66666665 5788988999999999999999999999987643
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHH-HcCCeeeEe--E--eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 179 SPKLYGDIISTRDYENRLNTLKNVR-NVGINICCG--G--IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~-~~G~~i~~~--~--i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
+. +++...+.++.+. +.++.+.+. . +.|. ..+. +..+.+..+.+++ ++.+.++...+. |+
T Consensus 108 ----l~------~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G--~~~i~~~~~~~~-~~ 173 (244)
T 1vzw_A 108 ----LE------TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEG--CARYVVTDIAKD-GT 173 (244)
T ss_dssp ----HH------CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTT--CCCEEEEEC------
T ss_pred ----hh------CHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCC--CCEEEEeccCcc-cc
Confidence 21 1222333333322 111222211 1 1222 1111 3445556666777 777766654432 22
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh---CcceeeeCCee
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~---GAn~~~~~~~~ 312 (348)
. ..++.+.+.++ +... +..+-+++|-.+ .+.....+.+ ||+.++.|..+
T Consensus 174 ~----~g~~~~~~~~i----~~~~-~ipvia~GGI~~--~~d~~~~~~~~~~Gadgv~vG~al 225 (244)
T 1vzw_A 174 L----QGPNLELLKNV----CAAT-DRPVVASGGVSS--LDDLRAIAGLVPAGVEGAIVGKAL 225 (244)
T ss_dssp ------CCCHHHHHHH----HHTC-SSCEEEESCCCS--HHHHHHHHTTGGGTEEEEEECHHH
T ss_pred c----CCCCHHHHHHH----HHhc-CCCEEEECCCCC--HHHHHHHHhhccCCCceeeeeHHH
Confidence 1 12333322222 2222 223333443221 2333446677 99999888644
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.82 Score=43.14 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=86.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccH
Q psy14485 59 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDL 132 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~ 132 (348)
+.+..+.+++|+ |+- +|+. .+ .+.+++++.++.+.+.|+.-|=++|..+.|.. ...
T Consensus 188 ~~~~~vMGIlNv-TPD--------SFsD---gg------~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~ 249 (442)
T 3mcm_A 188 LANTIRMGIVNL-SNQ--------SFSD---GN------FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEF 249 (442)
T ss_dssp CCSSEEEEEEEC-SSC--------C-CC---CS------SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHH
T ss_pred CCCceEEEEEeC-CCC--------CCCC---CC------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Confidence 456778888888 543 3332 11 46788999999999999998888764333311 234
Q ss_pred HHHHHHHHHHHh---cC-cEEEEecCCCCHHHHHHHHH--hCCCe-ee-ccCCCCHHHHhcc----------CC-C--CC
Q psy14485 133 DNIENMICEVKK---IG-LETCLTLGMLNENQAYRLKK--VGLDY-YN-HNLDTSPKLYGDI----------IS-T--RD 191 (348)
Q Consensus 133 ~~~~~l~~~i~~---~~-~~i~~~~g~l~~e~l~~Lk~--aG~~~-i~-~g~et~~e~l~~i----------~~-~--~~ 191 (348)
+++..+++.+++ .. ..+-++..+...+.++.--+ +|.+- |+ ++-+..+++++.+ +. + .+
T Consensus 250 ~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~VaeaAL~~~aGa~i~INDVsg~~d~~m~~v~a~~g~~vVlMh~~G~P~t 329 (442)
T 3mcm_A 250 NKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECNNIEQKAQLIAKYNKKYVIIHNLGITDR 329 (442)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCEEEEECCCHHHHHHHHHHHGGGCCEEEECCCTTHHHHHHHHHHHTCEEEEECC------
T ss_pred HHHHHHHHHHHhhccccCCCCeEEEeCCCHHHHHHHHhhCCCCCEEEEcCCCCCChHHHHHHHHhCCeEEEECCCCCCcc
Confidence 566667888876 11 24455788888888888887 88876 54 2222234555421 11 1 11
Q ss_pred -------------HHHHHHHHHHHHHcCC---eeeEeEeeecCCCHHHHHHHHHHH
Q psy14485 192 -------------YENRLNTLKNVRNVGI---NICCGGIIGLSESRDQRAELIFQL 231 (348)
Q Consensus 192 -------------~~~~~~~i~~~~~~G~---~i~~~~i~Glget~e~~~~~l~~l 231 (348)
.+...+.++.+.++|+ ++..+--+|++.|.++-.+.++.+
T Consensus 330 mq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGF~Kt~~~nl~lL~~l 385 (442)
T 3mcm_A 330 NQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYFDIGFGFGKKSDTARYLLENI 385 (442)
T ss_dssp ----------CTHHHHHHHHHHHHHHHTCCGGGEEEECCCC------------CCH
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCCCCCHHHHHHHHHHH
Confidence 2333456777788888 366665567766665544444333
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.16 Score=43.95 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+...+.++++.+.+.|++.+++. .|.+-| .. ..=.++++.+++. ...+++-.. -.+..++.+.++|.|.+.+-
T Consensus 24 D~~~l~~~i~~~~~~gad~lhvDvmDG~fvp-n~--t~G~~~v~~lr~~~~~DvhLMv~-~p~~~i~~~~~aGAd~itvH 99 (237)
T 3cu2_A 24 NWLQLNEEVTTLLENQINVLHFDIADGQFSS-LF--TVGAIGIKYFPTHCFKDVHLMVR-NQLEVAKAVVANGANLVTLQ 99 (237)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS-CB--CBCTHHHHTSCTTSEEEEEEECS-CHHHHHHHHHHTTCSEEEEE
T ss_pred CcccHHHHHHHHHHcCCCEEEEEEecCcccc-ch--hhhHHHHHHHhhhCCCCeEEEEE-CHHHHHHHHHHcCCCEEEEe
Confidence 34455666677778888876553 442222 11 1112566666653 113332221 22567899999999998877
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHc---------CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNV---------GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~---------G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.|+.+ ...++++.+++. |..+...+ . ..|+.+.++ .+.+ ..+.+.++..
T Consensus 100 ~ea~~-------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l--~-p~Tp~~~l~---~~l~---~~D~vlvMsv 157 (237)
T 3cu2_A 100 LEQYH-------------DFALTIEWLAKQKTTYANQVYPVLIGACL--C-PETPISELE---PYLD---QIDVIQLLTL 157 (237)
T ss_dssp TTCTT-------------SHHHHHHHHTTCEEEETTEEEECEEEEEE--C-TTSCGGGGT---TTTT---TCSEEEEESE
T ss_pred cCCcc-------------cHHHHHHHHHhcccccccccCCceEEEEE--e-CCChHHHHH---HHhh---cCceeeeeee
Confidence 76631 123567778887 66554432 1 234433222 1222 2677777766
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHH--hCcceeeeCCeeccCCCCCc
Q psy14485 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFL--AGANSIFYGDKLLTTDNTKT 320 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~--~GAn~~~~~~~~~~~~g~~~ 320 (348)
.|--|+. . -....++-+...|.+.+. ..|.+.+| +..+....... +|||.++.|..+... .+
T Consensus 158 ~pgfggq----~--f~~~~l~ki~~lr~~~~~~~~~~~I~vdGG---I~~~~~~~~~~~~aGad~~VvGSaIf~~---d~ 225 (237)
T 3cu2_A 158 DPRNGTK----Y--PSELILDRVIQVEKRLGNRRVEKLINIDGS---MTLELAKYFKQGTHQIDWLVSGSALFSG---EL 225 (237)
T ss_dssp ETTTTEE----C--CHHHHHHHHHHHHHHHGGGGGGCEEEEESS---CCHHHHHHHHHSSSCCCCEEECGGGGSS---CH
T ss_pred ccCcCCe----e--cChhHHHHHHHHHHHHHhcCCCceEEEECC---cCHHHHHHHHHhCCCCcEEEEeeHHhCC---CH
Confidence 6533322 1 134556666666666543 23444443 22444556788 999999998765432 34
Q ss_pred hHHHHHHH
Q psy14485 321 NDDSKLLK 328 (348)
Q Consensus 321 ~~~~~~i~ 328 (348)
.+..+.++
T Consensus 226 ~~~~~~l~ 233 (237)
T 3cu2_A 226 KTNLKVWK 233 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.85 E-value=2.4 Score=41.03 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhCC-----CCEEEEeccCCCCC------cccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHH
Q psy14485 99 SIESVITAAQKAKSDG-----ATRFCMGAAWRELK------DRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYR 163 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~ 163 (348)
+.+.+++.++.+.+.| +.-|=++|-.+-|. ....+++..+++.+++. ...+-++..+...+.++.
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 7899999999999999 88887876433232 12355677778888751 124455677778888888
Q ss_pred HHHhCCCeee-ccCCC-CHHHHhc---c--------C-C--CCC------H-----------------------------
Q psy14485 164 LKKVGLDYYN-HNLDT-SPKLYGD---I--------I-S--TRD------Y----------------------------- 192 (348)
Q Consensus 164 Lk~aG~~~i~-~g~et-~~e~l~~---i--------~-~--~~~------~----------------------------- 192 (348)
--++|.+-|+ ++-.. .+++++. . + + ..+ +
T Consensus 327 Al~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 406 (545)
T 2bmb_A 327 AIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKT 406 (545)
T ss_dssp HHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHC
T ss_pred HHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccc
Confidence 7778877776 33332 3444431 1 1 0 000 1
Q ss_pred -------HHHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 193 -------ENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 193 -------~~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
+...+.++.+.++|+. +..+--+|++-|.++-.+.++.+..+.
T Consensus 407 ~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~ 459 (545)
T 2bmb_A 407 VLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILK 459 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHH
Confidence 1223567888899994 788888888888888777777777775
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=1.1 Score=38.36 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCCEEEEecc--CCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 102 SVITAAQKAKSDGATRFCMGAA--WRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg--~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+..+.++.+.+.|++.+++.+- ...+. . .. +.++.+++ .++++.++.|..+++.++.+.++|++.+.++.+
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~-~---~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~ 105 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG-S---NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTA 105 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC-C---CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC-C---hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence 4455566777889999988642 11111 1 22 66666665 478998999999999999999999999998764
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=93.70 E-value=1.9 Score=37.74 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----------------ccHHHHHHHHHHHHhc--CcEEEEe--cCC---
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD----------------RDLDNIENMICEVKKI--GLETCLT--LGM--- 155 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~----------------~~~~~~~~l~~~i~~~--~~~i~~~--~g~--- 155 (348)
+.++..+.++.+.+.|++.|.++.-..+|.. ...+...++++.+++. ++++.+- ...
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 3467778888888899999988653212210 0134456788888864 4555442 111
Q ss_pred -CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 156 -LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 156 -l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
-.+..++.+.++|++.+.+.-. ..++..+.++.++++|+... .++....+.+.+ +.+ .+.
T Consensus 109 ~g~~~~~~~~~~aGadgii~~d~-------------~~e~~~~~~~~~~~~g~~~i--~l~~p~t~~~~i-~~i---~~~ 169 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVADV-------------PVEESAPFRQAALRHNIAPI--FICPPNADDDLL-RQV---ASY 169 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTC-------------CGGGCHHHHHHHHHTTCEEE--CEECTTCCHHHH-HHH---HHH
T ss_pred hhHHHHHHHHHHcCCCEEEEcCC-------------CHHHHHHHHHHHHHcCCcEE--EEECCCCCHHHH-HHH---Hhh
Confidence 1257899999999998875321 12455566788889998652 122223333333 322 223
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. ...+.+..+ .|+- ...........+.+...|... +..+-+..|-.+ ++....++.+|||.++.|..+
T Consensus 170 ~--~g~v~~~s~---~G~t--G~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI~t--~e~~~~~~~agAD~vVVGSai 237 (268)
T 1qop_A 170 G--RGYTYLLSR---SGVT--GAENRGALPLHHLIEKLKEYH-AAPALQGFGISS--PEQVSAAVRAGAAGAISGSAI 237 (268)
T ss_dssp C--CSCEEEESS---SSCC--CSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCS--HHHHHHHHHTTCSEEEECHHH
T ss_pred C--CCcEEEEec---CCcC--CCccCCCchHHHHHHHHHhcc-CCcEEEECCCCC--HHHHHHHHHcCCCEEEEChHH
Confidence 3 223222221 1221 111111122334445555544 333433333211 444455688999999988754
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=93.32 E-value=1.5 Score=38.61 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhc--CcEEEE-----ecCCCCHHHHHHHHHhCCCeeeccCCC-C--HHHHhc-c-CCCCCHHHHHHHHH
Q psy14485 133 DNIENMICEVKKI--GLETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT-S--PKLYGD-I-ISTRDYENRLNTLK 200 (348)
Q Consensus 133 ~~~~~l~~~i~~~--~~~i~~-----~~g~l~~e~l~~Lk~aG~~~i~~g~et-~--~e~l~~-i-~~~~~~~~~~~~i~ 200 (348)
+...++.+++-.. ++++.+ .|+.-....++.||++|+..+ ++.-| . +-.|+. + -.+.++++..+.++
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~ 157 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIA 157 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHH
Confidence 4566777766542 555553 355566688999999999998 77654 2 444432 3 24679999999999
Q ss_pred HHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCH----HHHHHHHHHHHHHC
Q psy14485 201 NVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP----LEFIRTIAVARITM 276 (348)
Q Consensus 201 ~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~----~~~~~~~a~~R~~l 276 (348)
.+++.|+.+.... .++++- ..+.+++ +|.|-+++=.-..| -+......+. +..-+++..+|.+.
T Consensus 158 ~A~~~gL~Ti~~v-----~~~eeA----~amA~ag--pDiI~~h~glT~gg-lIG~~~avs~~~~~e~i~~i~~a~~~vn 225 (286)
T 2p10_A 158 EAHKLDLLTTPYV-----FSPEDA----VAMAKAG--ADILVCHMGLTTGG-AIGARSGKSMDDCVSLINECIEAARTIR 225 (286)
T ss_dssp HHHHTTCEECCEE-----CSHHHH----HHHHHHT--CSEEEEECSCC----------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCeEEEec-----CCHHHH----HHHHHcC--CCEEEECCCCCCCC-cccCCCcccHHHhHHHHHHHHHHHHHhC
Confidence 9999999654331 244443 3445777 88876543110111 1111223343 34566777888888
Q ss_pred CCCceeccccccccchhhHHHHHHh--CcceeeeCCeeccCC-CCCchHHHHHHHHcCCCc
Q psy14485 277 PTSRIRMSAGRKEMGETTQAFCFLA--GANSIFYGDKLLTTD-NTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 277 p~~~i~~s~g~~~l~~~~~~~~l~~--GAn~~~~~~~~~~~~-g~~~~~~~~~i~~~G~~p 334 (348)
|+..+-..+|--. .++-.+.++.. |++.++....+.... .....+..+.++...+.|
T Consensus 226 pdvivLc~gGpIs-tpeDv~~~l~~t~G~~G~~gASsier~p~e~ai~~~~~~fk~~~~~~ 285 (286)
T 2p10_A 226 DDIIILSHGGPIA-NPEDARFILDSCQGCHGFYGASSMERLPAEEAIRSQTLAFKAIRRQP 285 (286)
T ss_dssp SCCEEEEESTTCC-SHHHHHHHHHHCTTCCEEEESHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCcEEEecCCCCC-CHHHHHHHHhcCCCccEEEeehhhhcCCHHHHHHHHHHHHHhcccCC
Confidence 8864432222111 24455667787 999997654221111 011134455555555554
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.19 E-value=1.7 Score=37.24 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=98.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
..++++....++.+.+.|++.+-+.-- ++. -.+.++.+++. ++.+... ..++.+.++...++|.+.+-.
T Consensus 42 ~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~------a~e~I~~l~~~~~~~~iGaG-TVlt~~~a~~Ai~AGA~fIvs 112 (232)
T 4e38_A 42 IDNAEDIIPLGKVLAENGLPAAEITFR--SDA------AVEAIRLLRQAQPEMLIGAG-TILNGEQALAAKEAGATFVVS 112 (232)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETT--STT------HHHHHHHHHHHCTTCEEEEE-CCCSHHHHHHHHHHTCSEEEC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCC--CCC------HHHHHHHHHHhCCCCEEeEC-CcCCHHHHHHHHHcCCCEEEe
Confidence 356789999999999999998877432 221 23455555542 3434322 367899999999999997752
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.+.+ .+.++.+++.|+.+-.+.. |+.++... .+++ .+.+.+++- .++
T Consensus 113 -P~~~----------------~~vi~~~~~~gi~~ipGv~-----TptEi~~A----~~~G--ad~vK~FPa-----~~~ 159 (232)
T 4e38_A 113 -PGFN----------------PNTVRACQEIGIDIVPGVN-----NPSTVEAA----LEMG--LTTLKFFPA-----EAS 159 (232)
T ss_dssp -SSCC----------------HHHHHHHHHHTCEEECEEC-----SHHHHHHH----HHTT--CCEEEECST-----TTT
T ss_pred -CCCC----------------HHHHHHHHHcCCCEEcCCC-----CHHHHHHH----HHcC--CCEEEECcC-----ccc
Confidence 2211 2445668888888765533 77776554 4677 888877432 211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. ...+...+--+|+..+-..+|- + .+.....+.+||.....|..+
T Consensus 160 ------gG---~~~lkal~~p~p~ip~~ptGGI-~--~~n~~~~l~aGa~~~vgGs~l 205 (232)
T 4e38_A 160 ------GG---ISMVKSLVGPYGDIRLMPTGGI-T--PSNIDNYLAIPQVLACGGTWM 205 (232)
T ss_dssp ------TH---HHHHHHHHTTCTTCEEEEBSSC-C--TTTHHHHHTSTTBCCEEECGG
T ss_pred ------cC---HHHHHHHHHHhcCCCeeeEcCC-C--HHHHHHHHHCCCeEEEECchh
Confidence 11 1444455555676433333332 2 233445678888887666544
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.14 E-value=2.3 Score=37.35 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----------------ccHHHHHHHHHHHHhc--CcEEEEec--CC---
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD----------------RDLDNIENMICEVKKI--GLETCLTL--GM--- 155 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~----------------~~~~~~~~l~~~i~~~--~~~i~~~~--g~--- 155 (348)
+++...+.++.+.+.|++-+.++--..+|.- ...+.+.++++.+++. .+++.+-. ..
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 4566777778888889998888632212211 1233667888888863 45554421 11
Q ss_pred -CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 156 -LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 156 -l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
=.+..++.++++|++.+.+. ...+++..+..+.++++|+... +++. ..|.+++++. +.+.
T Consensus 110 ~g~e~f~~~~~~aGvdgvii~-------------Dlp~ee~~~~~~~~~~~gl~~i--~lia-P~t~~eri~~---i~~~ 170 (267)
T 3vnd_A 110 NGIDEFYTKAQAAGVDSVLIA-------------DVPVEESAPFSKAAKAHGIAPI--FIAP-PNADADTLKM---VSEQ 170 (267)
T ss_dssp HCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEEE--CEEC-TTCCHHHHHH---HHHH
T ss_pred hhHHHHHHHHHHcCCCEEEeC-------------CCCHhhHHHHHHHHHHcCCeEE--EEEC-CCCCHHHHHH---HHHh
Confidence 12568999999999998752 1233456677888899998741 1222 3343333333 3334
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy14485 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
. ...+......+.-|+. ..-+ .+....+...|.... ..+-+..|-.+ ++.....+.+|||.++.|..
T Consensus 171 ~--~gfvY~vS~~GvTG~~--~~~~---~~~~~~v~~vr~~~~-~pv~vGfGI~~--~e~~~~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 171 G--EGYTYLLSRAGVTGTE--SKAG---EPIENILTQLAEFNA-PPPLLGFGIAE--PEQVRAAIKAGAAGAISGSA 237 (267)
T ss_dssp C--CSCEEESCCCCCC-------------CHHHHHHHHHTTTC-CCEEECSSCCS--HHHHHHHHHTTCSEEEECHH
T ss_pred C--CCcEEEEecCCCCCCc--cCCc---HHHHHHHHHHHHhcC-CCEEEECCcCC--HHHHHHHHHcCCCEEEECHH
Confidence 3 3344443444433432 1111 234555566665542 22333332111 33333378899999988863
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.98 E-value=1.1 Score=37.59 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC-CHH-HHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML-NEN-QAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l-~~e-~l~~Lk~aG~~~i~ 173 (348)
.+.++.++.++.+. .|+.-+-++- |. ....=.++++.+++. +..+.++.... ..+ .++.+.++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~----p~--~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~ 82 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT----PF--LIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVT 82 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH----HH--HHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc----HH--HHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEE
Confidence 45677777777764 4666544421 11 022234667777763 66766654432 233 48999999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..+.. .+...+.++.+++.|+.+... +.+ .+|. .+.+..+.+.+ .+.+.+.+-. .|..
T Consensus 83 v~~~~~------------~~~~~~~~~~~~~~g~~~~v~-~~~-~~t~---~~~~~~~~~~g--~d~i~v~~g~--~g~~ 141 (211)
T 3f4w_A 83 VLGVTD------------VLTIQSCIRAAKEAGKQVVVD-MIC-VDDL---PARVRLLEEAG--ADMLAVHTGT--DQQA 141 (211)
T ss_dssp EETTSC------------HHHHHHHHHHHHHHTCEEEEE-CTT-CSSH---HHHHHHHHHHT--CCEEEEECCH--HHHH
T ss_pred EeCCCC------------hhHHHHHHHHHHHcCCeEEEE-ecC-CCCH---HHHHHHHHHcC--CCEEEEcCCC--cccc
Confidence 755432 234556778888889876433 112 2343 34455566777 6776543111 1111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
+ ++.+ .+.+...|..+++..+.+.+|- + .+.....+.+||+.++.|..+.
T Consensus 142 ~---~~~~----~~~i~~l~~~~~~~~i~~~gGI-~--~~~~~~~~~~Gad~vvvGsai~ 191 (211)
T 3f4w_A 142 A---GRKP----IDDLITMLKVRRKARIAVAGGI-S--SQTVKDYALLGPDVVIVGSAIT 191 (211)
T ss_dssp T---TCCS----HHHHHHHHHHCSSCEEEEESSC-C--TTTHHHHHTTCCSEEEECHHHH
T ss_pred c---CCCC----HHHHHHHHHHcCCCcEEEECCC-C--HHHHHHHHHcCCCEEEECHHHc
Confidence 1 1112 2334445555666555555543 2 3334556789999998886553
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.64 Score=40.59 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+.++.+.+.|+..+.+.+-....... ....++++.+++ .++++.+..|..+.+.++.+.++|++.+.++-
T Consensus 33 ~~~a~~~~~~Ga~~i~v~d~~~~~~~~--g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTSSCSS--CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHHCCCCEEEEEecCcccCCC--cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 444555667799999887631110000 112456666665 47888888888888999999999999998864
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=92.88 E-value=2.2 Score=37.12 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCC----------------CcccHHHHHHHHHHHHhc-CcEEEEecCCCCHH---
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAAWREL----------------KDRDLDNIENMICEVKKI-GLETCLTLGMLNEN--- 159 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~----------------~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e--- 159 (348)
.++..+.++.+.+.|++.|.++....+| ...+.+...++++.+++. ++++.+.. ..+..
T Consensus 31 ~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~ 109 (262)
T 1rd5_A 31 LATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYKPIMFR 109 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe-cCcHHHHH
Confidence 4677788888888999999886431111 012456677888888874 56665432 11111
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCC
Q psy14485 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~ 238 (348)
.++.+.++|++.+.+.-.+. ++..+.++.+++.|+.. ++++ -.|..+..+.+ .... .
T Consensus 110 ~~~~a~~aGadgv~v~d~~~-------------~~~~~~~~~~~~~g~~~----i~~~a~~t~~e~~~~~---~~~~--~ 167 (262)
T 1rd5_A 110 SLAKMKEAGVHGLIVPDLPY-------------VAAHSLWSEAKNNNLEL----VLLTTPAIPEDRMKEI---TKAS--E 167 (262)
T ss_dssp CTHHHHHTTCCEEECTTCBT-------------TTHHHHHHHHHHTTCEE----CEEECTTSCHHHHHHH---HHHC--C
T ss_pred HHHHHHHcCCCEEEEcCCCh-------------hhHHHHHHHHHHcCCce----EEEECCCCCHHHHHHH---HhcC--C
Confidence 23448999999988632111 23455667788899873 3333 33444433333 2333 2
Q ss_pred CeeecccccccCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 239 ESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 239 ~~i~~~~l~P~~g-T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..+.+.. .+| |.-.. . . .....+.+...|... +..|-+..|-.+ ++.....+.+||+.++.|..+
T Consensus 168 g~v~~~s---~~G~tG~~~-~-~-~~~~~~~i~~v~~~~-~~pI~vgGGI~~--~e~~~~~~~~GAdgvvVGSai 233 (262)
T 1rd5_A 168 GFVYLVS---VNGVTGPRA-N-V-NPRVESLIQEVKKVT-NKPVAVGFGISK--PEHVKQIAQWGADGVIIGSAM 233 (262)
T ss_dssp SCEEEEC---SSCCBCTTS-C-B-CTHHHHHHHHHHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEECHHH
T ss_pred CeEEEec---CCCCCCCCc-C-C-CchHHHHHHHHHhhc-CCeEEEECCcCC--HHHHHHHHHcCCCEEEEChHH
Confidence 2332222 233 22111 1 1 123444555555544 323333333211 344445677899999888654
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=92.66 E-value=5 Score=35.35 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=115.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+++++++.+ .+.|+...++++.. ....+-+++.+++++-...-.. +.+++. .+.+.++.+.+.|+..|-+..
T Consensus 53 ~~~e~~l~~~---~~~GV~~~V~v~~~--~~~~~n~~~~~~~~~~p~r~~g~~~v~P~-~~~~eL~~l~~~gv~Gi~l~~ 126 (294)
T 4i6k_A 53 ATVQSFISHL---DEHNFTHGVLVQPS--FLGTNNQAMLNAIQQYPDRLKGIAVVQHT-TTFNELVNLKAQGIVGVRLNL 126 (294)
T ss_dssp BCHHHHHHHH---HHTTCCEEEEECCG--GGTTCCHHHHHHHHHSTTTEEEEECCCTT-CCHHHHHHHHTTTEEEEEEEC
T ss_pred CCHHHHHHHH---HHcCCCeEEEecCc--ccccchHHHHHHHHHCCCeEEEEEEeCCc-ccHHHHHHHHHCCCcEEEecc
Confidence 5677777654 56799987766541 1122335666666543221111 223443 356888999888887777544
Q ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 177 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 177 et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.... .+....+.+...++.+.+.|+.+..+. + ..++.+....+++.. . .+.+.-+ |.|...
T Consensus 127 ~~~~------~~~~~~~~~~~~~~~a~~~glpv~iH~--~----~~~l~~~~~~l~~~p--~-~~Vi~H~----g~p~~~ 187 (294)
T 4i6k_A 127 FGLN------LPALNTPDWQKFLRNVESLNWQVELHA--P----PKYLVQLLPQLNEYS--F-DVVIDHF----GRVDPV 187 (294)
T ss_dssp TTSC------CCCSSSHHHHHHHHHHHHTTCEEEEEC--C----HHHHHHHHHHHTTSS--S-CEEESGG----GCCCTT
T ss_pred CCCC------CCCcccHHHHHHHHHHHHcCCEEEEee--C----cchHHHHHHHHHHCC--C-CEEEECC----CCCCCC
Confidence 2210 011233677888999999999987663 1 233444455555542 2 2222221 222211
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccc-ccc--------chhhHHHHHHhCcceeeeCCee-cc-CCC-CCchHHH
Q psy14485 257 SSILDPLEFIRTIAVARITMPTSRIRMSAGR-KEM--------GETTQAFCFLAGANSIFYGDKL-LT-TDN-TKTNDDS 324 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~-~~l--------~~~~~~~~l~~GAn~~~~~~~~-~~-~~g-~~~~~~~ 324 (348)
... .......+..+++ .|+..+.+|+-. ..- ........-..|++.++.|... .. ..+ ++.....
T Consensus 188 ~g~-~~~~~~~~~~l~~--~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~ 264 (294)
T 4i6k_A 188 KGI-EDPDYQKFLSLLN--VKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAI 264 (294)
T ss_dssp TCT-TCHHHHHHHHHCC--TTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHH
T ss_pred CCC-CCHHHHHHHHHHh--CCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHH
Confidence 111 1122222333332 467777766321 110 0233344455799999777532 22 222 3445578
Q ss_pred HHHHHcCCCchhhhhHHhhhhc
Q psy14485 325 KLLKKLGINTRNIKIKMKNNIK 346 (348)
Q Consensus 325 ~~i~~~G~~p~~~~~~~~~~~~ 346 (348)
+.+.+.+..+.++..-+-.|.+
T Consensus 265 ~~l~~~~~~~~~~~~i~~~NA~ 286 (294)
T 4i6k_A 265 KAFKQIVFDKHEQCLILNQNPT 286 (294)
T ss_dssp HHHHHHCCCHHHHHHHHTHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCHH
Confidence 8888888777766555555543
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=5.1 Score=42.65 Aligned_cols=206 Identities=15% Similarity=0.067 Sum_probs=122.8
Q ss_pred cCHHHHHHHHHHHHhC--CCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEE--Eec----C------CCC
Q psy14485 98 LSIESVITAAQKAKSD--GATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETC--LTL----G------MLN 157 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~--~~~----g------~l~ 157 (348)
++.++.+..++.+.+. |+.++-..||.+. ....+++.+..+.+.+. +..+. +.. | .+.
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~--~~~~~~l~R~~n~vgy~~~pd~v~ 629 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIP--NVLFQMLLRASNAVGYKNYPDNVI 629 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCC--SSEEEEEEETTTBTCSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCC--CCeEEEEeccccccccccCCchhH
Confidence 6789999999988887 8888866554210 11122333333322222 33332 221 1 123
Q ss_pred HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee---c------CCCHHHHHHHH
Q psy14485 158 ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---L------SESRDQRAELI 228 (348)
Q Consensus 158 ~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G---l------get~e~~~~~l 228 (348)
...++...++|++.+.+..-.+ ........++.+++.|..+...+.|- + -.+.+.+++.+
T Consensus 630 ~~~v~~a~~~Gvd~irif~~~s-----------d~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a 698 (1150)
T 3hbl_A 630 HKFVQESAKAGIDVFRIFDSLN-----------WVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLA 698 (1150)
T ss_dssp HHHHHHHHHTTCCEEEEECTTC-----------CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHH
T ss_pred HHHHHHHHhCCcCEEEEEeeCC-----------HHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHH
Confidence 4568888999999987654332 11233456777888897766555554 2 14678889999
Q ss_pred HHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcce
Q psy14485 229 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANS 305 (348)
Q Consensus 229 ~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~ 305 (348)
+.+.+++ .+.+.+- .| ....++....+++...|..+ +..|.+- .|+ +..-....|+.+||+.
T Consensus 699 ~~~~~~G--a~~i~l~------Dt----~G~~~P~~~~~lv~~l~~~~-~~~i~~H--~Hnt~G~a~An~laA~~aGa~~ 763 (1150)
T 3hbl_A 699 KELEREG--FHILAIK------DM----AGLLKPKAAYELIGELKSAV-DLPIHLH--THDTSGNGLLTYKQAIDAGVDI 763 (1150)
T ss_dssp HHHHHTT--CSEEEEE------ET----TCCCCHHHHHHHHHHHHHHC-CSCEEEE--ECBTTSCHHHHHHHHHHTTCSE
T ss_pred HHHHHcC--CCeeeEc------Cc----cCCCCHHHHHHHHHHHHHhc-CCeEEEE--eCCCCcHHHHHHHHHHHhCCCE
Confidence 9999998 6665432 22 13457788888888888765 3333221 232 1223456688999999
Q ss_pred ee---e--CCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 306 IF---Y--GDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 306 ~~---~--~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+= . |+ .+.++..+++..+++..|+.+
T Consensus 764 vD~ai~GlG~---~~gn~~lE~lv~~L~~~g~~t 794 (1150)
T 3hbl_A 764 IDTAVASMSG---LTSQPSANSLYYALNGFPRHL 794 (1150)
T ss_dssp EEEBCGGGCS---BTSCCBHHHHHHHTTTSSCCB
T ss_pred EEEeccccCC---CCCCccHHHHHHHHHhcCCCc
Confidence 81 1 22 122233467777888888764
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.06 E-value=5.9 Score=34.78 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.++.+ .++.+.+.|+..+.+.+... ...-..+++ +.+++ .++++-..-..+++.++...+.+|.|.|.++.
T Consensus 79 ~dp~~---~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 79 FDPPA---LAKAYEEGGAACLSVLTDTP-SFQGAPEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIM 150 (272)
T ss_dssp CCHHH---HHHHHHHTTCSEEEEECCST-TTCCCHHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEET
T ss_pred CCHHH---HHHHHHHCCCCEEEEecccc-ccCCCHHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcc
Confidence 34544 44556678999987765411 111234444 34444 46676555556888899999999999998765
Q ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy14485 177 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 177 et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
-. .+.++..+.++.+++.|+.+-+.+ +|.+++ ..+.+++ ++.|+++.... +.+
T Consensus 151 a~-----------L~~~~l~~l~~~a~~lGl~~lvev-----h~~eEl----~~A~~~g--a~iIGinnr~l---~t~-- 203 (272)
T 3tsm_A 151 AS-----------VDDDLAKELEDTAFALGMDALIEV-----HDEAEM----ERALKLS--SRLLGVNNRNL---RSF-- 203 (272)
T ss_dssp TT-----------SCHHHHHHHHHHHHHTTCEEEEEE-----CSHHHH----HHHTTSC--CSEEEEECBCT---TTC--
T ss_pred cc-----------cCHHHHHHHHHHHHHcCCeEEEEe-----CCHHHH----HHHHhcC--CCEEEECCCCC---ccC--
Confidence 32 134566677888999998654332 355553 4455777 88888875422 112
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceecc-ccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 257 SSILDPLEFIRTIAVARITMPTSRIRMS-AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s-~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.++.+...++. -.+|...+-++ +|-.+ ++.......+||+.++.|+.+
T Consensus 204 --~~dl~~~~~L~----~~ip~~~~vIaesGI~t--~edv~~l~~~Ga~gvLVG~al 252 (272)
T 3tsm_A 204 --EVNLAVSERLA----KMAPSDRLLVGESGIFT--HEDCLRLEKSGIGTFLIGESL 252 (272)
T ss_dssp --CBCTHHHHHHH----HHSCTTSEEEEESSCCS--HHHHHHHHTTTCCEEEECHHH
T ss_pred --CCChHHHHHHH----HhCCCCCcEEEECCCCC--HHHHHHHHHcCCCEEEEcHHH
Confidence 13333333332 23565332222 32222 444455678999999998865
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.53 Score=40.40 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=101.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHH-HHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNEN-QAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e-~l~~Lk~aG~~~i 172 (348)
.+.-.+.++++.+.+.|++.+++- .|.+-| ... .=..+++.+++. +..+-++.-..+++ .++.+.+ .+.+
T Consensus 15 ~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvp-n~t--~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~i 89 (227)
T 1tqx_A 15 SNISKLAEETQRMESLGAEWIHLDVMDMHFVP-NLS--FGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQL 89 (227)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-CBC--CCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEEeCCcCc-chh--cCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEE
Confidence 344556666677777888876543 342222 221 113667777763 34554444433333 3444444 6777
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHH---HHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLK---NVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~---~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+-.|+.++ +.. ++++ .+++.|.++...+ .. .|+. +.++.+.+++. ++.+-++...|-
T Consensus 90 tvH~ea~~~---------~~~---~~i~~~~~i~~~G~k~gval--np-~tp~---~~~~~~l~~g~-~D~VlvmsV~pG 150 (227)
T 1tqx_A 90 TFHFEALNE---------DTE---RCIQLAKEIRDNNLWCGISI--KP-KTDV---QKLVPILDTNL-INTVLVMTVEPG 150 (227)
T ss_dssp EEEGGGGTT---------CHH---HHHHHHHHHHTTTCEEEEEE--CT-TSCG---GGGHHHHTTTC-CSEEEEESSCTT
T ss_pred EEeecCCcc---------CHH---HHHHHHHHHHHcCCeEEEEe--CC-CCcH---HHHHHHhhcCC-cCEEEEeeeccC
Confidence 766665211 222 4556 8889999876653 22 3432 23344445321 688877777754
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
-|. +.. ....++-+...|.+.++..|.+.+| ++.+.......+|||.++.|..+.
T Consensus 151 f~g----q~f--~~~~l~ki~~lr~~~~~~~I~VdGG---I~~~ti~~~~~aGAd~~V~GsaIf 205 (227)
T 1tqx_A 151 FGG----QSF--MHDMMGKVSFLRKKYKNLNIQVDGG---LNIETTEISASHGANIIVAGTSIF 205 (227)
T ss_dssp CSS----CCC--CGGGHHHHHHHHHHCTTCEEEEESS---CCHHHHHHHHHHTCCEEEESHHHH
T ss_pred CCC----ccc--chHHHHHHHHHHHhccCCeEEEECC---CCHHHHHHHHHcCCCEEEEeHHHh
Confidence 332 211 1133444455666666555666654 234455667899999999887654
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.95 Score=43.63 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
++-.+.++.+.+.|+.-+++.+. +. .-+...++++.+++....+.+-.| ..+.+..+.|.++|+|.+-+|+..
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~a--hG---hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpG 354 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSS--QG---NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSG 354 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCS--CC---CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCS
T ss_pred ccHHHHHHHHHhcCCcEEEEecc--cc---ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCC
Confidence 45566778888999999988765 11 126788999999986333333333 688999999999999999998876
Q ss_pred CHHHH---hccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy14485 179 SPKLY---GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 179 ~~e~l---~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
+--.- ..++.+ ....+.++-+.+++.|+++.++.= -.+..|+...+
T Consensus 355 SiCtTr~v~GvG~P-Q~tAi~~~a~~a~~~~vpvIADGG---I~~sGDi~KAl 403 (556)
T 4af0_A 355 SICITQEVMAVGRP-QGTAVYAVAEFASRFGIPCIADGG---IGNIGHIAKAL 403 (556)
T ss_dssp TTBCCTTTCCSCCC-HHHHHHHHHHHHGGGTCCEEEESC---CCSHHHHHHHH
T ss_pred cccccccccCCCCc-HHHHHHHHHHHHHHcCCCEEecCC---cCcchHHHHHh
Confidence 32111 122211 456788888999999988766521 23556666655
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.62 Score=42.89 Aligned_cols=78 Identities=9% Similarity=0.000 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEE--ecC-----CCCHHHHHHHHHhCCC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCL--TLG-----MLNENQAYRLKKVGLD 170 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~g-----~l~~e~l~~Lk~aG~~ 170 (348)
+.++..+.++.+.+.|+++|+.+=- .+.......+.+.++++..++.++++.+ ++. .++.+.+..+++.|++
T Consensus 15 ~~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lGi~ 94 (372)
T 2p0o_A 15 ITNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELGVT 94 (372)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 3567778888899999999844322 1111123457788888888888888875 332 2345778899999999
Q ss_pred eeeccC
Q psy14485 171 YYNHNL 176 (348)
Q Consensus 171 ~i~~g~ 176 (348)
.+-+..
T Consensus 95 glRLD~ 100 (372)
T 2p0o_A 95 GLRMDY 100 (372)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 887644
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=5.8 Score=33.04 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=93.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEe-cCCCCHHHHHHHHHhCCCeeec
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLT-LGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
..+++++.+.++.+.+.|++.|.+... ++. .. +.++.+.+ .+..+.+. .+..+.+.++...++|++.+.+
T Consensus 15 ~~d~~~~~~~~~~~~~~G~~~i~l~~~--~~~--~~----~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~ 86 (212)
T 2v82_A 15 GITPDEALAHVGAVIDAGFDAVEIPLN--SPQ--WE----QSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVT 86 (212)
T ss_dssp TCCHHHHHHHHHHHHHHTCCEEEEETT--STT--HH----HHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCC--Chh--HH----HHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEe
Confidence 356788888888888889999988544 221 22 33333433 34333332 2356788999999999999974
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.. . .+.++.+++.|..+ ++| -.|.++.. ...+.+ .+.+.+++ |.
T Consensus 87 ~~~-~----------------~~~~~~~~~~g~~~----~~g-~~t~~e~~----~a~~~G--~d~v~v~~------t~- 131 (212)
T 2v82_A 87 PNI-H----------------SEVIRRAVGYGMTV----CPG-CATATEAF----TALEAG--AQALKIFP------SS- 131 (212)
T ss_dssp SSC-C----------------HHHHHHHHHTTCEE----ECE-ECSHHHHH----HHHHTT--CSEEEETT------HH-
T ss_pred CCC-C----------------HHHHHHHHHcCCCE----Eee-cCCHHHHH----HHHHCC--CCEEEEec------CC-
Confidence 321 1 12356677788764 334 25666542 334566 78777522 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCeecc
Q psy14485 255 YGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 314 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~ 314 (348)
+.+ +..+...+..++ +..+-+.+|- + .+.....+.+||+.+..|..+..
T Consensus 132 ----~~g----~~~~~~l~~~~~~~ipvia~GGI-~--~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 132 ----AFG----PQYIKALKAVLPSDIAVFAVGGV-T--PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp ----HHC----HHHHHHHHTTSCTTCEEEEESSC-C--TTTHHHHHHHTCSEEEECTTTCC
T ss_pred ----CCC----HHHHHHHHHhccCCCeEEEeCCC-C--HHHHHHHHHcCCCEEEEChHHhC
Confidence 111 233333344455 3333344432 2 23334457799999988876533
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=90.52 E-value=10 Score=34.57 Aligned_cols=146 Identities=13% Similarity=0.177 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCee
Q psy14485 130 RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
.+.+++.++.+..++.|+.+..++ ++.+.++.|.+.|++.+-++--. + +.+..++.+.+.|.++
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~st~--fD~~svd~l~~~~v~~~KI~S~~---~-----------~N~pLL~~va~~gKPv 138 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAICTP--FDEESVDLIEAHGIEIIKIASCS---F-----------TDWPLLERIARSDKPV 138 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEE--CSHHHHHHHHHTTCCEEEECSSS---T-----------TCHHHHHHHHTSCSCE
T ss_pred CCHHHHHHHHHHHHHcCCcEEecc--CCHHHHHHHHHcCCCEEEECccc---c-----------cCHHHHHHHHhhCCcE
Confidence 345667777777777898886655 78888999999999988765321 0 1122344555567664
Q ss_pred eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc
Q psy14485 210 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE 289 (348)
Q Consensus 210 ~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~ 289 (348)
- +--|+. |.+++...++++.+-+ .+.+-++...-+| || ..+-.+..+...+..+|+..|-.|. |.
T Consensus 139 i--LstGms-tl~Ei~~Ave~i~~~g--~~viLlhC~s~YP-t~-------~~~~nL~aI~~Lk~~fp~lpVG~Sd--Ht 203 (350)
T 3g8r_A 139 V--ASTAGA-RREDIDKVVSFMLHRG--KDLTIMHCVAEYP-TP-------DDHLHLARIKTLRQQYAGVRIGYST--HE 203 (350)
T ss_dssp E--EECTTC-CHHHHHHHHHHHHTTT--CCEEEEECCCCSS-CC-------GGGCCTTHHHHHHHHCTTSEEEEEE--CC
T ss_pred E--EECCCC-CHHHHHHHHHHHHHcC--CCEEEEecCCCCC-CC-------cccCCHHHHHHHHHHCCCCCEEcCC--CC
Confidence 2 123444 9999999999998876 3322222211111 12 1222355667777778765454442 44
Q ss_pred cc--hhhHHHHHHhCccee
Q psy14485 290 MG--ETTQAFCFLAGANSI 306 (348)
Q Consensus 290 l~--~~~~~~~l~~GAn~~ 306 (348)
.+ ......|+.+||..+
T Consensus 204 ~g~~~~~~~AAvAlGA~vI 222 (350)
T 3g8r_A 204 DPDLMEPIMLAVAQGATVF 222 (350)
T ss_dssp CSSCCHHHHHHHHTTCCEE
T ss_pred CCCccHHHHHHHHcCCCEE
Confidence 32 123456889999855
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.47 E-value=7.5 Score=33.04 Aligned_cols=158 Identities=9% Similarity=0.014 Sum_probs=94.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.++.++.++.+.+.|++-|-+.-- ++ .-.+.++.+++. ++.+.... .++.+.++...++|.+.+..+
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~k--~~------~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTLR--SQ------HGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESS--ST------HHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--Cc------cHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEeC
Confidence 35677888888899999998877522 21 123445555442 34444333 578899999999999998754
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+++. +.++.+++.|... +.| -.|+++... +.+.+ .+.+.+++
T Consensus 106 -~~d~----------------~v~~~~~~~g~~~----i~G-~~t~~e~~~----A~~~G--ad~vk~FP---------- 147 (225)
T 1mxs_A 106 -GITE----------------DILEAGVDSEIPL----LPG-ISTPSEIMM----GYALG--YRRFKLFP---------- 147 (225)
T ss_dssp -SCCH----------------HHHHHHHHCSSCE----ECE-ECSHHHHHH----HHTTT--CCEEEETT----------
T ss_pred -CCCH----------------HHHHHHHHhCCCE----EEe-eCCHHHHHH----HHHCC--CCEEEEcc----------
Confidence 3332 4566677777643 445 356666533 44677 88888733
Q ss_pred CCCCCCHHHH--HHHHHHHHHHCCCCceeccccccccchhhHHHHHH-hCcceeeeCCee
Q psy14485 256 GSSILDPLEF--IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKL 312 (348)
Q Consensus 256 ~~~~~~~~~~--~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~-~GAn~~~~~~~~ 312 (348)
.... ...+...+-.+|+..+-..+|- + .+.....+. +||+.+. +..+
T Consensus 148 ------a~~~~G~~~lk~i~~~~~~ipvvaiGGI-~--~~N~~~~l~~~Ga~~v~-gSai 197 (225)
T 1mxs_A 148 ------AEISGGVAAIKAFGGPFGDIRFCPTGGV-N--PANVRNYMALPNVMCVG-TTWM 197 (225)
T ss_dssp ------HHHHTHHHHHHHHHTTTTTCEEEEBSSC-C--TTTHHHHHHSTTBCCEE-ECTT
T ss_pred ------CccccCHHHHHHHHhhCCCCeEEEECCC-C--HHHHHHHHhccCCEEEE-Echh
Confidence 1111 3455556666775444333432 1 222333567 6899986 5433
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.06 E-value=2.4 Score=35.63 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=93.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEec--cCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCH-HHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGA--AWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNE-NQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~g--g~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~ 173 (348)
.++..+.+.++.+.+.|++.+.+.- |...+ .. ..-.++++.+++. +..+.+....-+. +.++.+.++|++.+.
T Consensus 13 ~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~-~~--~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 13 ADYANFASELARIEETDAEYVHIDIMDGQFVP-NI--SFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS-CB--CBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC-cc--ccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 3445666667777788988866543 31111 11 1114566666653 5555554443333 357999999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..+.. +...+.++.+++.|..+...+ ...|..+. +..+....+.+-+....|--++.
T Consensus 90 vh~~~~-------------~~~~~~~~~~~~~g~~i~~~~---~~~t~~e~------~~~~~~~~d~vl~~~~~~g~~g~ 147 (220)
T 2fli_A 90 IHTEST-------------RHIHGALQKIKAAGMKAGVVI---NPGTPATA------LEPLLDLVDQVLIMTVNPGFGGQ 147 (220)
T ss_dssp EEGGGC-------------SCHHHHHHHHHHTTSEEEEEE---CTTSCGGG------GGGGTTTCSEEEEESSCTTCSSC
T ss_pred EccCcc-------------ccHHHHHHHHHHcCCcEEEEE---cCCCCHHH------HHHHHhhCCEEEEEEECCCCccc
Confidence 654321 112244566667786654332 12333332 22222124555433343322221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHH
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i 327 (348)
. .. ++. ++.+...|...+ +..+-+.+|-. ++....+..+||+.+..|..+... ..+.+..+.+
T Consensus 148 ~--~~-~~~---~~~i~~~~~~~~~~~~~~~i~v~GGI~---~~~~~~~~~~Gad~vvvGsai~~~--~d~~~a~~~~ 214 (220)
T 2fli_A 148 A--FI-PEC---LEKVATVAKWRDEKGLSFDIEVDGGVD---NKTIRACYEAGANVFVAGSYLFKA--SDLVSQVQTL 214 (220)
T ss_dssp C--CC-GGG---HHHHHHHHHHHHHTTCCCEEEEESSCC---TTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHH
T ss_pred c--cC-HHH---HHHHHHHHHHHHhcCCCceEEEECcCC---HHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHHHH
Confidence 1 11 221 222233333222 33344455421 222334678899999888655322 3344444433
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.98 E-value=11 Score=34.39 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc-CCe
Q psy14485 131 DLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GIN 208 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~-G~~ 208 (348)
+.+...+.++++++. ...+.++.+.-+.+.++.+.++|++.|.++... + ..+.+.+.++.+++. +++
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~----------G-~~~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAH----------G-HSLNIIRTLKEIKSKMNID 147 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSC----------C-SBHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCC----------C-CcHHHHHHHHHHHHhcCCc
Confidence 557788888888864 456666766555899999999999998765321 1 235667778887775 665
Q ss_pred eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC-----CCCCCCCHHHHHHHHHHHHHHCCCCceec
Q psy14485 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-----YGSSILDPLEFIRTIAVARITMPTSRIRM 283 (348)
Q Consensus 209 i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l-----~~~~~~~~~~~~~~~a~~R~~lp~~~i~~ 283 (348)
+.. |-..|.++ ++.+.+.+ .+.+.+. . .||+.- .....++...+..+...++.. +..|-+
T Consensus 148 Viv----g~v~t~e~----A~~l~~aG--aD~I~VG-~--~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~--~iPVIA 212 (361)
T 3khj_A 148 VIV----GNVVTEEA----TKELIENG--ADGIKVG-I--GPGSICTTRIVAGVGVPQITAIEKCSSVASKF--GIPIIA 212 (361)
T ss_dssp EEE----EEECSHHH----HHHHHHTT--CSEEEEC-S--SCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH--TCCEEE
T ss_pred EEE----ccCCCHHH----HHHHHHcC--cCEEEEe-c--CCCcCCCcccccCCCCCcHHHHHHHHHHHhhc--CCeEEE
Confidence 543 33345544 45566777 8888762 1 233211 011123333223332222221 222333
Q ss_pred cccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 284 SAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 284 s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++|-.+ ......++.+||+.++.|..+
T Consensus 213 ~GGI~~--~~di~kala~GAd~V~vGs~~ 239 (361)
T 3khj_A 213 DGGIRY--SGDIGKALAVGASSVMIGSIL 239 (361)
T ss_dssp ESCCCS--HHHHHHHHHHTCSEEEESTTT
T ss_pred ECCCCC--HHHHHHHHHcCCCEEEEChhh
Confidence 443222 233455788999999877543
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=89.64 E-value=8.9 Score=32.69 Aligned_cols=183 Identities=15% Similarity=0.093 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----------------ccHHHHHHHHHHHHhc-CcEEEEecCCCC----
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD----------------RDLDNIENMICEVKKI-GLETCLTLGMLN---- 157 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~----------------~~~~~~~~l~~~i~~~-~~~i~~~~g~l~---- 157 (348)
+.++..+.++.+.+. ++.+.++--..+|.. .+.....++++.+++. ++++.+-.+.-+
T Consensus 17 ~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 95 (248)
T 1geq_A 17 DKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRA 95 (248)
T ss_dssp CHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhc
Confidence 346888888888777 888888721111100 0345567888888874 455544332112
Q ss_pred --HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhc
Q psy14485 158 --ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANL 234 (348)
Q Consensus 158 --~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l 234 (348)
.+.++.+.++|++.+.++-... ++..+.++.+++.|..+ ++++ ..|..+..+.+.. .
T Consensus 96 ~~~~~~~~~~~~Gad~v~~~~~~~-------------~~~~~~~~~~~~~g~~~----~~~i~~~t~~e~~~~~~~---~ 155 (248)
T 1geq_A 96 GVRNFLAEAKASGVDGILVVDLPV-------------FHAKEFTEIAREEGIKT----VFLAAPNTPDERLKVIDD---M 155 (248)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCG-------------GGHHHHHHHHHHHTCEE----EEEECTTCCHHHHHHHHH---H
T ss_pred CHHHHHHHHHHCCCCEEEECCCCh-------------hhHHHHHHHHHHhCCCe----EEEECCCCHHHHHHHHHh---c
Confidence 5789999999999999864331 12335577777888764 3455 4465555444322 2
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. ...+.+ +..+|+- ....... ...++.+...|... +..+.+++|-.. .+.....+.+||+.++.|..+
T Consensus 156 ~--d~~i~~---~~~~G~~-g~~~~~~-~~~~~~i~~l~~~~-~~pi~~~GGI~~--~e~i~~~~~~Gad~vivGsai 223 (248)
T 1geq_A 156 T--TGFVYL---VSLYGTT-GAREEIP-KTAYDLLRRAKRIC-RNKVAVGFGVSK--REHVVSLLKEGANGVVVGSAL 223 (248)
T ss_dssp C--SSEEEE---ECCC--------CCC-HHHHHHHHHHHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEECHHH
T ss_pred C--CCeEEE---EECCccC-CCCCCCC-hhHHHHHHHHHhhc-CCCEEEEeecCC--HHHHHHHHHcCCCEEEEcHHH
Confidence 2 113322 2224421 1111111 23344445555444 333444444211 133334568999999887643
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.43 E-value=4.6 Score=34.16 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+++...+.++.+.+.|++.+.+. .|...+. .. .-.++++.+++. +..+.+..-.- +.+.++.+.++|++.+.
T Consensus 20 ~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~-~~--~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~ 96 (230)
T 1rpx_A 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN-IT--IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-BC--CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc-cc--cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 445666777777778898877665 3322121 11 124666667653 33332222222 33578899999999998
Q ss_pred ccCC--CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 174 HNLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 174 ~g~e--t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
+..+ .. +...+.++.+++.|+.+...+. ..|..+..+ .+....+.+-+..+.|--+
T Consensus 97 vh~~~~~~-------------~~~~~~~~~~~~~g~~ig~~~~---p~t~~e~~~------~~~~~~d~vl~~~~~pg~~ 154 (230)
T 1rpx_A 97 VHCEQSST-------------IHLHRTINQIKSLGAKAGVVLN---PGTPLTAIE------YVLDAVDLVLIMSVNPGFG 154 (230)
T ss_dssp EECSTTTC-------------SCHHHHHHHHHHTTSEEEEEEC---TTCCGGGGT------TTTTTCSEEEEESSCTTCS
T ss_pred EEecCccc-------------hhHHHHHHHHHHcCCcEEEEeC---CCCCHHHHH------HHHhhCCEEEEEEEcCCCC
Confidence 7664 32 1123456667777876544432 223333221 2211256664444443211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
++ .. .++. ++.+...|...+ +..+-+.+|- +++....++.+||+.+..|..+.
T Consensus 155 g~--~~-~~~~---~~~i~~l~~~~~~~~~~~pi~v~GGI---~~~n~~~~~~aGad~vvvgSaI~ 211 (230)
T 1rpx_A 155 GQ--SF-IESQ---VKKISDLRKICAERGLNPWIEVDGGV---GPKNAYKVIEAGANALVAGSAVF 211 (230)
T ss_dssp SC--CC-CTTH---HHHHHHHHHHHHHHTCCCEEEEESSC---CTTTHHHHHHHTCCEEEESHHHH
T ss_pred Cc--cc-cHHH---HHHHHHHHHHHHhcCCCceEEEECCC---CHHHHHHHHHcCCCEEEEChhhh
Confidence 11 11 1222 233333343332 3233344432 22333347888999998886553
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=11 Score=33.35 Aligned_cols=193 Identities=10% Similarity=0.044 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHH-hc--CcEEEEecCCCCH----HHHHHHHHhCCC-eeeccCCCCHHHHhccCC-CCCHHHHHHHHHHH
Q psy14485 132 LDNIENMICEVK-KI--GLETCLTLGMLNE----NQAYRLKKVGLD-YYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNV 202 (348)
Q Consensus 132 ~~~~~~l~~~i~-~~--~~~i~~~~g~l~~----e~l~~Lk~aG~~-~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~ 202 (348)
.+.+.+.++..+ .. +..+.++.+..+. +.++.+.++|+| .|.+++-+ |.. +.-.. +.+.+...+.++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~-P~~-~g~~~~g~~~e~~~~iv~~v 153 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSC-PNV-PGEPQLAYDFEATEKLLKEV 153 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCC-CCS-SSCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccC-CCC-CCcccccCCHHHHHHHHHHH
Confidence 455555555544 23 4556666554443 346677788999 88887754 111 11100 23778888888888
Q ss_pred HHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc-----c--CCCCCCC-------C-CCCCHHHHH
Q psy14485 203 RNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-----I--KGTPLYG-------S-SILDPLEFI 266 (348)
Q Consensus 203 ~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P-----~--~gT~l~~-------~-~~~~~~~~~ 266 (348)
++. ++++..-+- .+-+.+++.+.++.+.+.+ ++.+.+....+ . .+++... . .++.....+
T Consensus 154 r~~~~~Pv~vKi~--~~~~~~~~~~~a~~~~~~G--~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~ 229 (311)
T 1jub_A 154 FTFFTKPLGVKLP--PYFDLVHFDIMAEILNQFP--LTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTAL 229 (311)
T ss_dssp TTTCCSCEEEEEC--CCCSHHHHHHHHHHHTTSC--CCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHH
T ss_pred HHhcCCCEEEEEC--CCCCHHHHHHHHHHHHHcC--CcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHH
Confidence 875 555544322 2336777777788888887 78776654321 1 1111110 0 111122334
Q ss_pred HHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCC-c----hHHHHHHHHcCCC
Q psy14485 267 RTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTK-T----NDDSKLLKKLGIN 333 (348)
Q Consensus 267 ~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~-~----~~~~~~i~~~G~~ 333 (348)
.++...+..++ +..|-..+|-.+ .+.....+.+||+.++.|.-+.. .|+. . ++..+.+.+.|+.
T Consensus 230 ~~i~~v~~~~~~~ipvi~~GGI~~--~~da~~~l~~GAd~V~vg~~~l~-~~p~~~~~i~~~l~~~l~~~g~~ 299 (311)
T 1jub_A 230 ANVRAFYTRLKPEIQIIGTGGIET--GQDAFEHLLCGATMLQIGTALHK-EGPAIFDRIIKELEEIMNQKGYQ 299 (311)
T ss_dssp HHHHHHHTTSCTTSEEEEESSCCS--HHHHHHHHHHTCSEEEECHHHHH-HCTHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCCCEEEECCCCC--HHHHHHHHHcCCCEEEEchHHHh-cCcHHHHHHHHHHHHHHHHcCCC
Confidence 55555555454 333333343222 33445567899999977643321 2332 1 3556777888886
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=14 Score=34.19 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC--CCCC---cccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW--RELK---DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~---~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+.+...+.++.+++.|+.-|.++.-. +++. ....+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--VTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CSGGGHHHHTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--CCHHHHHHHHhh-CCEEE
Confidence 68889999999999999987776531 1111 1345666555555556788886544 666777788777 88887
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec-cc-ccccCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NN-LVQIKG 251 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~-~~-l~P~~g 251 (348)
++--.. .+ ...++.+.+.|.+|. +--|+.-|.+++...++.+.+-+ ...+.+ .. ..-+|.
T Consensus 231 Igs~~~----------~n----~~LL~~~a~~gkPVi--lk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~~rG~s~yp~ 292 (385)
T 3nvt_A 231 IGARNM----------QN----FELLKAAGRVDKPIL--LKRGLSATIEEFIGAAEYIMSQG--NGKIILCERGIRTYEK 292 (385)
T ss_dssp ECGGGT----------TC----HHHHHHHHTSSSCEE--EECCTTCCHHHHHHHHHHHHTTT--CCCEEEEECCBCCSCC
T ss_pred ECcccc----------cC----HHHHHHHHccCCcEE--EecCCCCCHHHHHHHHHHHHHcC--CCeEEEEECCCCCCCC
Confidence 754221 01 133455556666652 23455569999999999998877 333322 21 111221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-cc--ccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIR-MS--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+.... .+..+...+..+.-..+. .+ .|+..+-......|+.+||++++.+..+
T Consensus 293 ~~~~~l-------dl~~i~~lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~ 349 (385)
T 3nvt_A 293 ATRNTL-------DISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHP 349 (385)
T ss_dssp SSSSBC-------CTTHHHHHHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCcccc-------CHHHHHHHHHhcCCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecC
Confidence 121111 122333344332111121 11 2222222345677899999998776543
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=88.75 E-value=2.9 Score=36.25 Aligned_cols=122 Identities=10% Similarity=0.105 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cC-CCC-HHHHHHHHHhCCCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LG-MLN-ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g-~l~-~e~l~~Lk~aG~~~i~~ 174 (348)
..+.+.+.++.+++.|+..|.|+--.. ....+.+.+.++++... +++++.+ .. ..+ .+-++.|.+.|++||.-
T Consensus 71 E~~~M~~Di~~~~~~GadGvV~G~Lt~-dg~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILT 147 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGVLDV-DGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT 147 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBCT-TSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeECC-CCCcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 456777888889999999999965422 23468888999987766 5666654 22 122 45689999999999873
Q ss_pred -cCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy14485 175 -NLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 175 -g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|-+. +..+-++.++.+.+ ++ ...+|.|-|=+.+.+.+.+ ..+ +..+.++
T Consensus 148 SG~~~------------~a~~g~~~L~~Lv~~a~---~i~Im~GgGv~~~Ni~~l~----~tG--v~e~H~S 198 (256)
T 1twd_A 148 SGQKS------------DALQGLSKIMELIAHRD---APIIMAGAGVRAENLHHFL----DAG--VLEVHSS 198 (256)
T ss_dssp CTTSS------------STTTTHHHHHHHHTSSS---CCEEEEESSCCTTTHHHHH----HHT--CSEEEEC
T ss_pred CCCCC------------CHHHHHHHHHHHHHhhC---CcEEEecCCcCHHHHHHHH----HcC--CCeEeEC
Confidence 2211 12222334444433 34 5577887766555554432 345 5555544
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=88.34 E-value=9.7 Score=31.41 Aligned_cols=175 Identities=17% Similarity=0.099 Sum_probs=95.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCC-HH-HHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLN-EN-QAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~-~e-~l~~Lk~aG~~~i~ 173 (348)
.+.++.++.++.+.. |+..+.++.+. ....=.++++.+++. +..+.+..+..+ .+ .++.+.++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~~~------~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~ 82 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGTPL------IKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVT 82 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECHHH------HHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECcHH------HHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEE
Confidence 467888888888776 88888774431 012223456666653 556554433334 44 48899999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCee-eccccccc-CC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESV-PINNLVQI-KG 251 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i-~~~~l~P~-~g 251 (348)
+..+..++ ...++++.+++.|..+...+ .. -.|+++..+.+ .+.+ .+.+ .+..+.|. .|
T Consensus 83 vh~~~~~~------------~~~~~~~~~~~~g~~~gv~~-~s-~~~p~~~~~~~---~~~g--~d~v~~~~~~~~~~~g 143 (207)
T 3ajx_A 83 VLGSADDS------------TIAGAVKAAQAHNKGVVVDL-IG-IEDKATRAQEV---RALG--AKFVEMHAGLDEQAKP 143 (207)
T ss_dssp EETTSCHH------------HHHHHHHHHHHHTCEEEEEC-TT-CSSHHHHHHHH---HHTT--CSEEEEECCHHHHTST
T ss_pred EeccCChH------------HHHHHHHHHHHcCCceEEEE-ec-CCChHHHHHHH---HHhC--CCEEEEEecccccccC
Confidence 65544322 23355666777788753221 11 23556544333 3455 6777 33344442 33
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.. + .. +.++ ..+-. +..+.+.+|- +.+....++.+||+.+..|..+.
T Consensus 144 ~~-----~-~~-~~i~---~~~~~--~~pi~v~GGI---~~~~~~~~~~aGad~vvvGsaI~ 190 (207)
T 3ajx_A 144 GF-----D-LN-GLLA---AGEKA--RVPFSVAGGV---KVATIPAVQKAGAEVAVAGGAIY 190 (207)
T ss_dssp TC-----C-TH-HHHH---HHHHH--TSCEEEESSC---CGGGHHHHHHTTCSEEEESHHHH
T ss_pred CC-----c-hH-HHHH---HhhCC--CCCEEEECCc---CHHHHHHHHHcCCCEEEEeeecc
Confidence 22 1 11 2222 22211 3234333432 12334556899999998886553
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=88.03 E-value=21 Score=34.83 Aligned_cols=186 Identities=17% Similarity=0.179 Sum_probs=106.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeeec
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~~ 174 (348)
.+.+++++.++...+.|..-|-++-|. +.....+.+.+++..+++. ++.+ +..+...+.++.-.++ |.+-|+
T Consensus 337 ~~~~~a~~~A~~~v~~GAdiIDIgpg~--~~v~~~ee~~rvv~~i~~~~~vpi--sIDT~~~~v~eaal~~~~G~~iIN- 411 (566)
T 1q7z_A 337 GNEEIVIKEAKTQVEKGAEVLDVNFGI--ESQIDVRYVEKIVQTLPYVSNVPL--SLDIQNVDLTERALRAYPGRSLFN- 411 (566)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECSS--GGGSCHHHHHHHHHHHHHHTCSCE--EEECCCHHHHHHHHHHCSSCCEEE-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHHHhhCCceE--EEeCCCHHHHHHHHHhcCCCCEEE-
Confidence 467999999999999999998887441 2223556777777777653 5555 6677889999888888 887665
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee-cCCCHHHHHHHHH----HHHhcCCCCCeeeccccccc
Q psy14485 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-LSESRDQRAELIF----QLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G-lget~e~~~~~l~----~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+... . +...+.++.++++|..+...-+-| ..+|.+++.+.+. .+.+.+ + + ..++.-
T Consensus 412 ----------dis~~-~-~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~G--i---~-~~IilD 473 (566)
T 1q7z_A 412 ----------SAKVD-E-EELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHD--F---S-DRVIFD 473 (566)
T ss_dssp ----------EEESC-H-HHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTT--C---G-GGEEEE
T ss_pred ----------ECCcc-h-hhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCC--C---C-CcEEEe
Confidence 11111 1 333455777788888654433444 3445665555443 344444 2 2 334444
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCce-----ecccc---ccccchhhHHHHHHhCcceeeeCC
Q psy14485 250 KGT-PLYGSSILDPLEFIRTIAVARITMPTSRI-----RMSAG---RKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 250 ~gT-~l~~~~~~~~~~~~~~~a~~R~~lp~~~i-----~~s~g---~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
||. |+.. .. ...+.++-+...|.. +..+ +.|.+ +..+..-....++..|++.+...+
T Consensus 474 Pg~~~igf-gk-~~~~~l~~~~~~~~~--g~p~l~G~Snksf~~~~~~~l~~t~a~~a~~~G~~i~rvh~ 539 (566)
T 1q7z_A 474 PGVLPLGA-EG-KPVEVLKTIEFISSK--GFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIMNP 539 (566)
T ss_dssp CCCCCTTT-TC-CHHHHHHHHHHHHHT--TCEECCBGGGGSTTSTTHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCCcccC-cH-HHHHHHHHHHHHHhC--CCCEEEEeCcccccCCHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 554 1111 11 555666666666643 2111 11111 122223344667889999886643
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=87.87 E-value=9 Score=34.26 Aligned_cols=131 Identities=10% Similarity=0.060 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHhc-CcEEEEec-CC----CCHHHHHHHHHhCCC--
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKKI-GLETCLTL-GM----LNENQAYRLKKVGLD-- 170 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~~-~~~i~~~~-g~----l~~e~l~~Lk~aG~~-- 170 (348)
+.+.+.++...+.|+.-|-+++..+.|. ..+.+...++++.+.+. ++.+ +. ++ .+.+.++.-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vpl--sI~DT~~~~~~~~V~eaal~aga~~k 151 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPL--MIIGCGVEEKDAEIFPVIGEALSGRN 151 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCE--EEECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceE--EEECCCCCCCCHHHHHHHHHhCCCCC
Confidence 7888888888899999999988533342 34667777788888764 6665 56 66 777888888888876
Q ss_pred -eee-ccCCCCHHHHhccC---------CCCCHHHHHHHHHHHHHcCC---eeeEeEeeec-CCCHHHHHHHHHHHHh
Q psy14485 171 -YYN-HNLDTSPKLYGDII---------STRDYENRLNTLKNVRNVGI---NICCGGIIGL-SESRDQRAELIFQLAN 233 (348)
Q Consensus 171 -~i~-~g~et~~e~l~~i~---------~~~~~~~~~~~i~~~~~~G~---~i~~~~i~Gl-get~e~~~~~l~~l~~ 233 (348)
-|+ +.-+..++++.... ...+.+...+.++.+.++|+ ++..+-.+|. |-+.+.-...+..++.
T Consensus 152 ~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 152 CLLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp CEEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred CEEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 232 22222255554211 11256777778888889998 4778878885 8666666566666666
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=87.80 E-value=13 Score=32.18 Aligned_cols=174 Identities=14% Similarity=0.017 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
...+.++.+.+.|+..+.+.+... ...-..+++..+-+ ..++++-..-..+++..+...+++|+|.|.++..
T Consensus 66 ~p~~~A~~~~~~GA~~isvlt~~~-~f~G~~~~l~~i~~---~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~---- 137 (254)
T 1vc4_A 66 DPVEAALAYARGGARAVSVLTEPH-RFGGSLLDLKRVRE---AVDLPLLRKDFVVDPFMLEEARAFGASAALLIVA---- 137 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCS-SSCCCHHHHHHHHH---HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHH----
T ss_pred CHHHHHHHHHHcCCCEEEEecchh-hhccCHHHHHHHHH---hcCCCEEECCcCCCHHHHHHHHHcCCCEEEECcc----
Confidence 345555667788999998865421 11123444444333 2467766556678888899999999999998662
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCC
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILD 261 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~ 261 (348)
.+. ++..+.++.+++.|+.+-+. -.+.++. ..+.+++ ++.++++..... .+ .++
T Consensus 138 ~l~--------~~l~~l~~~a~~lGl~~lve-----v~~~~E~----~~a~~~g--ad~IGvn~~~l~---~~----~~d 191 (254)
T 1vc4_A 138 LLG--------ELTGAYLEEARRLGLEALVE-----VHTEREL----EIALEAG--AEVLGINNRDLA---TL----HIN 191 (254)
T ss_dssp HHG--------GGHHHHHHHHHHHTCEEEEE-----ECSHHHH----HHHHHHT--CSEEEEESBCTT---TC----CBC
T ss_pred chH--------HHHHHHHHHHHHCCCeEEEE-----ECCHHHH----HHHHHcC--CCEEEEccccCc---CC----CCC
Confidence 221 34556677777888765321 2344543 2455666 788888775532 12 223
Q ss_pred HHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 262 PLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 262 ~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+...++........++..+-..+|-.+ ++.-..... ||+.++.|..+
T Consensus 192 l~~~~~L~~~i~~~~~~~~vIAegGI~s--~~dv~~l~~-Ga~gvlVGsAl 239 (254)
T 1vc4_A 192 LETAPRLGRLARKRGFGGVLVAESGYSR--KEELKALEG-LFDAVLIGTSL 239 (254)
T ss_dssp TTHHHHHHHHHHHTTCCSEEEEESCCCS--HHHHHTTTT-TCSEEEECHHH
T ss_pred HHHHHHHHHhCccccCCCeEEEEcCCCC--HHHHHHHHc-CCCEEEEeHHH
Confidence 3333333322211011222222333222 233334556 99999888755
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=1.4 Score=37.72 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+|+++.+... .-..++|+-. |-+ .....+.+.++++.+++.|+.+++-.. -+.+.++.-++.|.+
T Consensus 76 t~emi~ia~~~---kP~~vtLVPE~r~e~TTegGld-v~~~~~~l~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GA~ 150 (243)
T 1m5w_A 76 TEEMLAIAVET---KPHFCCLVPEKRQEVTTEGGLD-VAGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVGAP 150 (243)
T ss_dssp SHHHHHHHHHH---CCSEEEECCCCSSCSSCCSCCC-SGGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCcCCCcchh-HHhhHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcC
Confidence 45677665544 4567777632 111 124678999999999999999877664 678999999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHH
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQ 223 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~ 223 (348)
+|.+--+.-.+.+........++.+.++.+.+++.|+.|+++ -|| .++...
T Consensus 151 ~IELhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAG--HgL~y~Nv~~ 202 (243)
T 1m5w_A 151 FIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAG--HGLTYHNVKA 202 (243)
T ss_dssp EEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEE--SSCCTTTHHH
T ss_pred EEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC--CCCCHHHHHH
Confidence 998754321111110001124567778888889999999876 455 455444
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.62 E-value=4.5 Score=35.78 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH--hcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--KIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~--~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
++.+++...++.+.+.|++.|--++|.. ....+.+.+.-+.+.++ ...+.+-++.|..+.+.+..|.++|.+|+-.
T Consensus 185 Lt~eei~~A~~ia~eaGADfVKTSTGf~-~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGt- 262 (288)
T 3oa3_A 185 LTADEIIAGCVLSSLAGADYVKTSTGFN-GPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGA- 262 (288)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCCSSS-SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEE-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeeh-
Confidence 6788888888888889999887666532 22345555433333333 2357788899999999999999999998752
Q ss_pred CCCCHHHHhcc
Q psy14485 176 LDTSPKLYGDI 186 (348)
Q Consensus 176 ~et~~e~l~~i 186 (348)
-+..++++..
T Consensus 263 -S~g~~I~~~~ 272 (288)
T 3oa3_A 263 -SAGVKIVNET 272 (288)
T ss_dssp -SCHHHHHHHH
T ss_pred -hhHHHHHHHH
Confidence 1235666654
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=87.56 E-value=1.3 Score=38.18 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
..+.++.+.+.|++.+++.+........ ....++++.+++ .++++.++.|..+.+.++.+.++|++.+.+|-.
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~--~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~ 110 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTA 110 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSS--CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhH
Confidence 3445566677899999887642111111 112456677766 478899999999999999999999999988753
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=3 Score=38.69 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=57.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCC------CCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRE------LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
-+++++.+.+++..+.|+..+-+ .|+... ....+.+.+.++++..++.++.+.++.. ..+.++...++|+
T Consensus 172 ~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~al~~G~ 249 (426)
T 2r8c_A 172 DGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY--TPAAIARAVRCGV 249 (426)
T ss_dssp CSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEEC--SHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeC--ChHHHHHHHHcCC
Confidence 46788888888877778776533 332111 1134678899999999988888777665 5566777778999
Q ss_pred CeeeccCCCCHHH
Q psy14485 170 DYYNHNLDTSPKL 182 (348)
Q Consensus 170 ~~i~~g~et~~e~ 182 (348)
+++.++.-.+++.
T Consensus 250 ~~i~H~~~~~~~~ 262 (426)
T 2r8c_A 250 RTIEHGNLIDDET 262 (426)
T ss_dssp SEEEECTTCCHHH
T ss_pred CEEecCCcCCHHH
Confidence 9888765444443
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=87.43 E-value=17 Score=33.07 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=79.8
Q ss_pred HHHHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeeec--CCCHHHHHHHHHHHH
Q psy14485 160 QAYRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIGL--SESRDQRAELIFQLA 232 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl--get~e~~~~~l~~l~ 232 (348)
.++.+.++|+|.|.+++.+ ...+.+. .+. ....+...+.++.+++ .++++.+-+-.|. ..+.++..+.+..+.
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~ 154 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMA 154 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHH
Confidence 4556677899999998876 4444332 111 1356777788888777 4777766544566 345667888888888
Q ss_pred hcCCCCCeeecccccccCC-CCCC--CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy14485 233 NLNPYPESVPINNLVQIKG-TPLY--GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 233 ~l~~~~~~i~~~~l~P~~g-T~l~--~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
+.+ ++.+.++.-....| ++-. ..++.+ +..+...+..+|+..|-+.+|-.+ .+.....+. ||+.++.|
T Consensus 155 ~aG--~d~I~V~~r~~~~g~~g~~~~~~~~~~----~~~i~~ik~~~~~iPVianGgI~s--~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 155 EAG--VKVFVVHARSALLALSTKANREIPPLR----HDWVHRLKGDFPQLTFVTNGGIRS--LEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HTT--CCEEEEECSCBC----------CCCCC----HHHHHHHHHHCTTSEEEEESSCCS--HHHHHHHHT-TSSEEEEC
T ss_pred HcC--CCEEEEecCchhcccCcccccCCCccc----HHHHHHHHHhCCCCeEEEECCcCC--HHHHHHHHh-CCCEEEEC
Confidence 888 88887764332111 0000 011222 233444444555544444443222 233334454 99999776
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=4.9 Score=34.97 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=53.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++.+++...++.+.+.|+..|--++|. .+...+++.+.-+.+.+ ...+.+-++.|..+.+.+..|.++|.+|+-
T Consensus 169 ~Lt~eei~~A~~ia~eaGADfVKTSTGf-~~~GAT~edV~lm~~~v-g~~v~VKaAGGIrt~~~al~mi~aGA~RiG 243 (260)
T 3r12_A 169 YLDTEEKIAACVISKLAGAHFVKTSTGF-GTGGATAEDVHLMKWIV-GDEMGVKASGGIRTFEDAVKMIMYGADRIG 243 (260)
T ss_dssp GCCHHHHHHHHHHHHHTTCSEEECCCSS-SSCCCCHHHHHHHHHHH-CTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHHHHHhCcCEEEcCCCC-CCCCCCHHHHHHHHHHh-CCCceEEEeCCCCCHHHHHHHHHcCCceee
Confidence 3678888888888888899888776663 22234455544443333 345778888999999999999999999875
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=87.42 E-value=0.94 Score=39.21 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--CH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--SP 180 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et--~~ 180 (348)
++.++...+.|++++++..-+.. ........++++.+.+ ..+++++-.|..+.+.++.+-++|++++.++-.. ++
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a--~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p 111 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGA--KDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDA 111 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHH--HCGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCH
T ss_pred HHHHHHHHHCCCCEEEEEecCcc--cccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCC
Confidence 33455667789999988753100 1111223456666654 5889999999999999999999999999987554 24
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeEe------eec----CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 181 KLYGDIISTRDYENRLNTLKNVRNVG---INICCGGI------IGL----SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~i------~Gl----get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++.+ +. +++.| +-++.+.. +-. ..|.-+..+.+..+.+++ ...+-+.. +
T Consensus 112 ~li~------------e~---~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~eil~t~-I 173 (243)
T 4gj1_A 112 TLCL------------EI---LKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKG--LKHILCTD-I 173 (243)
T ss_dssp HHHH------------HH---HHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTT--CCEEEEEE-T
T ss_pred chHH------------HH---HhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcC--CcEEEeee-e
Confidence 4432 22 33334 22333321 111 122234566667777776 56654433 3
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
-..||- ..++.+ ++...+...|+..+-+++|-.++ .+.. .+..+++.++.|.
T Consensus 174 d~DGt~----~G~d~~----l~~~l~~~~~~ipviasGGv~~~-~Dl~--~l~~~~~gvivg~ 225 (243)
T 4gj1_A 174 SKDGTM----QGVNVR----LYKLIHEIFPNICIQASGGVASL-KDLE--NLKGICSGVIVGK 225 (243)
T ss_dssp TC---------CCCHH----HHHHHHHHCTTSEEEEESCCCSH-HHHH--HTTTTCSEEEECH
T ss_pred cccccc----cCCCHH----HHHHHHHhcCCCCEEEEcCCCCH-HHHH--HHHccCchhehHH
Confidence 345663 233433 33333444666555566664343 2222 3466777776553
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.41 E-value=13 Score=31.90 Aligned_cols=167 Identities=11% Similarity=-0.028 Sum_probs=88.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCC----CcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWREL----KDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+.+.++.+.+.|++.|.+-.-..+. ...+...+.++.+.+++ .++.+.+|- .++...++|.+.|.+
T Consensus 45 ~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd------~~~lA~~~gAdGVHL 118 (243)
T 3o63_A 45 LAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVND------RADIARAAGADVLHL 118 (243)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeC------HHHHHHHhCCCEEEe
Confidence 4455555667899998884331000 00234455555555543 578887763 245577889999998
Q ss_pred cCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 175 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 175 g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
+.+. .....+ .+ .| .+.++|. -.|.++... +.+.+ ++.+.+.++.|.+..
T Consensus 119 g~~dl~~~~~r----------------~~--~~----~~~~iG~S~ht~~Ea~~----A~~~G--aDyI~vgpvf~T~tK 170 (243)
T 3o63_A 119 GQRDLPVNVAR----------------QI--LA----PDTLIGRSTHDPDQVAA----AAAGD--ADYFCVGPCWPTPTK 170 (243)
T ss_dssp CTTSSCHHHHH----------------HH--SC----TTCEEEEEECSHHHHHH----HHHSS--CSEEEECCSSCCCC-
T ss_pred cCCcCCHHHHH----------------Hh--hC----CCCEEEEeCCCHHHHHH----HhhCC--CCEEEEcCccCCCCC
Confidence 7654 222111 11 11 2346666 678776443 34466 899999887765433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+.. ++.+.+.+.++ +...+ +..+-+-+|- ..+.....+.+||+.+..+..+
T Consensus 171 ~~~--~~~gl~~l~~~----~~~~~~~iPvvAiGGI---~~~ni~~~~~aGa~gvav~sai 222 (243)
T 3o63_A 171 PGR--AAPGLGLVRVA----AELGGDDKPWFAIGGI---NAQRLPAVLDAGARRIVVVRAI 222 (243)
T ss_dssp ------CCCHHHHHHH----HTC---CCCEEEESSC---CTTTHHHHHHTTCCCEEESHHH
T ss_pred CCc--chhhHHHHHHH----HHhccCCCCEEEecCC---CHHHHHHHHHcCCCEEEEeHHH
Confidence 321 23343322222 21121 2222222332 2333455788999999777644
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.11 E-value=14 Score=31.98 Aligned_cols=184 Identities=13% Similarity=0.121 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----------------ccHHHHHHHHHHHHhc--CcEEEEecCCCC---
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD----------------RDLDNIENMICEVKKI--GLETCLTLGMLN--- 157 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~----------------~~~~~~~~l~~~i~~~--~~~i~~~~g~l~--- 157 (348)
+.++.++.++.+.+.|++.|-++.-..+|.. ...+.+.++++.+++. ++++.+- +..+
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 3466777788888899999888543212110 1234567788888874 5666552 1111
Q ss_pred ----HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHh
Q psy14485 158 ----ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 233 (348)
Q Consensus 158 ----~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~ 233 (348)
+..++.++++|++.+.+. ....++..+.++.++++|+.+.. ++... +.++++..+ .+
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~-------------dl~~ee~~~~~~~~~~~gl~~i~--l~~p~-t~~~rl~~i---a~ 168 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP-------------DLPPEEAEELKAVMKKYVLSFVP--LGAPT-STRKRIKLI---CE 168 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT-------------TCCHHHHHHHHHHHHHTTCEECC--EECTT-CCHHHHHHH---HH
T ss_pred HhhHHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCcEEE--EeCCC-CCHHHHHHH---HH
Confidence 467889999999987752 23357788888999999986521 22223 333333332 22
Q ss_pred cCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 234 LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 234 l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. ...+....+...-|+. .+.+.....+++...|... +..+-+..|-.+ ++ +...+.+|||.++.|..+
T Consensus 169 ~a--~gfiy~vs~~g~TG~~----~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t--~e-~~~~~~~gADgvIVGSai 237 (262)
T 2ekc_A 169 AA--DEMTYFVSVTGTTGAR----EKLPYERIKKKVEEYRELC-DKPVVVGFGVSK--KE-HAREIGSFADGVVVGSAL 237 (262)
T ss_dssp HC--SSCEEEESSCC-------------CHHHHHHHHHHHHHC-CSCEEEESSCCS--HH-HHHHHHTTSSEEEECHHH
T ss_pred hC--CCCEEEEecCCccCCC----CCcCcccHHHHHHHHHhhc-CCCEEEeCCCCC--HH-HHHHHHcCCCEEEECHHH
Confidence 32 2222111111122221 1111144567777777765 333433332211 23 333478999999888644
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.62 E-value=3.4 Score=35.54 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=51.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|++.|--++|. .+...+++.+.-+-+.+ ...+.+-++.|..+.+.+..|.++|.+|+-
T Consensus 154 Lt~eei~~a~~ia~~aGADfVKTSTGf-~~ggAt~~dv~lmr~~v-g~~v~VKasGGIrt~~da~~~i~aGA~riG 227 (239)
T 3ngj_A 154 LTNEEKVEVCKRCVAAGAEYVKTSTGF-GTHGATPEDVKLMKDTV-GDKALVKAAGGIRTFDDAMKMINNGASRIG 227 (239)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCSS-SSCCCCHHHHHHHHHHH-GGGSEEEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCcCEEECCCCC-CCCCCCHHHHHHHHHhh-CCCceEEEeCCCCCHHHHHHHHHhccccee
Confidence 677888888887788888888776552 22233445544433333 345777778888888888899999998875
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.09 E-value=11 Score=33.41 Aligned_cols=121 Identities=12% Similarity=0.225 Sum_probs=71.7
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHHHH-HhCCCee
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYRLK-KVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~Lk-~aG~~~i 172 (348)
.+.+.|+++|-|.|+ ..|...+.....++++..+..|+.+....|. .++|+...+. +-|+|.+
T Consensus 98 ~ai~~GFtSVMiDgS-~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~L 176 (288)
T 3q94_A 98 EAIDAGFTSVMIDAS-HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 176 (288)
T ss_dssp HHHHHTCSEEEECCT-TSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEE
T ss_pred HHHHcCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEE
Confidence 445569999988776 3333445566667777777778877765432 3456665554 6899999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
-+++.|.--.|+. .+..+++.. +.|+.. .++++. +-|- |-..+++.+.+ +++ +.-|.+
T Consensus 177 AvaiGt~HG~Y~~-~p~Ld~~~L-~~I~~~--v~vpLV---lHGgSG~~~e~i~~ai----~~G--v~KiNi 235 (288)
T 3q94_A 177 APALGSVHGPYKG-EPNLGFAEM-EQVRDF--TGVPLV---LHGGTGIPTADIEKAI----SLG--TSKINV 235 (288)
T ss_dssp EECSSCBSSCCSS-SCCCCHHHH-HHHHHH--HCSCEE---ECCCTTCCHHHHHHHH----HTT--EEEEEE
T ss_pred EEEcCcccCCcCC-CCccCHHHH-HHHHHh--cCCCEE---EeCCCCCCHHHHHHHH----HcC--CeEEEE
Confidence 9999885445542 234455443 333322 255443 4455 66667665544 455 444444
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=85.65 E-value=7.1 Score=33.34 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+.+++...++.+.+.|...|--++|...+....++.+.-+.+.+. ..+.+-++.|..+.+.+..|.++|.+|+-
T Consensus 144 t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~RiG 217 (231)
T 3ndo_A 144 GEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATRLG 217 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchhcc
Confidence 789999988888899999887776632122344555444444333 46788889999999999999999999875
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=85.61 E-value=15 Score=30.67 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=96.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
.++++.++.++.+.+.|++-|-+.-- ++ .-.+.++.+++.++.+.... .++.+.++...++|.+.+..+ +
T Consensus 22 ~~~~~~~~~~~~l~~gGv~~iel~~k--~~------~~~~~i~~~~~~~~~~gag~-vl~~d~~~~A~~~GAd~v~~~-~ 91 (207)
T 2yw3_A 22 RGGEDLLGLARVLEEEGVGALEITLR--TE------KGLEALKALRKSGLLLGAGT-VRSPKEAEAALEAGAAFLVSP-G 91 (207)
T ss_dssp CSCCCHHHHHHHHHHTTCCEEEEECS--ST------HHHHHHHHHTTSSCEEEEES-CCSHHHHHHHHHHTCSEEEES-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC--Ch------HHHHHHHHHhCCCCEEEeCe-EeeHHHHHHHHHcCCCEEEcC-C
Confidence 35566777788888889998766422 21 12355555555334444444 678899999999999988654 3
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy14485 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
++. +.++.+++.|.. ++.|. .|.++.... .+.+ .+.+.+++ ..+
T Consensus 92 ~d~----------------~v~~~~~~~g~~----~i~G~-~t~~e~~~A----~~~G--ad~v~~fp-----a~~---- 135 (207)
T 2yw3_A 92 LLE----------------EVAALAQARGVP----YLPGV-LTPTEVERA----LALG--LSALKFFP-----AEP---- 135 (207)
T ss_dssp CCH----------------HHHHHHHHHTCC----EEEEE-CSHHHHHHH----HHTT--CCEEEETT-----TTT----
T ss_pred CCH----------------HHHHHHHHhCCC----EEecC-CCHHHHHHH----HHCC--CCEEEEec-----Ccc----
Confidence 322 445666667765 34453 466665443 4567 88888732 111
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeecc
Q psy14485 258 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 314 (348)
Q Consensus 258 ~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~ 314 (348)
.... ..+...+-.+|+..+-..+|- + .+.....+.+||+.+..+..+..
T Consensus 136 --~gG~---~~lk~l~~~~~~ipvvaiGGI-~--~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 136 --FQGV---RVLRAYAEVFPEVRFLPTGGI-K--EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp --TTHH---HHHHHHHHHCTTCEEEEBSSC-C--GGGHHHHHTCSSBSCEEESGGGS
T ss_pred --ccCH---HHHHHHHhhCCCCcEEEeCCC-C--HHHHHHHHhCCCcEEEEehhhhC
Confidence 1122 334456666776444334432 1 23334468899999977665533
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=6.3 Score=33.40 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.+++...++...+.|.+.|--+.|.. +...+.+.+..+.+.+ ...+.+-++.|..+.+.+..|.++|.+|+-. -
T Consensus 130 l~~e~i~~a~~ia~eaGADfVKTsTGf~-~~gat~~dv~~m~~~v-g~~v~VkaaGGirt~~~al~~i~aGa~RiG~--S 205 (220)
T 1ub3_A 130 FSPEEIARLAEAAIRGGADFLKTSTGFG-PRGASLEDVALLVRVA-QGRAQVKAAGGIRDRETALRMLKAGASRLGT--S 205 (220)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCSSS-SCCCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEEE--T
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCC-CCCCCHHHHHHHHHhh-CCCCeEEEECCCCCHHHHHHHHHCCCcccch--h
Confidence 5788888888888889999887766532 2233445554444443 4467888888988999988899999997753 2
Q ss_pred CCHHHHhcc
Q psy14485 178 TSPKLYGDI 186 (348)
Q Consensus 178 t~~e~l~~i 186 (348)
+...+++.+
T Consensus 206 ~g~~I~~~~ 214 (220)
T 1ub3_A 206 SGVALVAGE 214 (220)
T ss_dssp THHHHHC--
T ss_pred HHHHHHHHh
Confidence 234555544
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=85.39 E-value=14 Score=32.86 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC------------------CCCHHHHHHHHHhCCCeeecc
Q psy14485 114 GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG------------------MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 114 G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g------------------~l~~e~l~~Lk~aG~~~i~~g 175 (348)
|+++|-|.|+ ..|...+.....++++..+..++.+...+| ..+++....+.+.|+|.+-++
T Consensus 113 GFtSVMiDgS-~~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv~TgvD~LAva 191 (306)
T 3pm6_A 113 GFDSIMVDMS-HFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFVATGINWLAPA 191 (306)
T ss_dssp CCSEEEECCT-TSCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHHTTTCSEECCC
T ss_pred CCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHHHHHHcCCCEEEEE
Confidence 8999988776 333344556666777777777877775433 135688888878999999999
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.|.--.|+.-.+..+++.. +.++..-..++++. +-|- |-..+++.+.+ +++ +.-+.+
T Consensus 192 iGt~HG~Yk~~~p~Ld~~~L-~~I~~~v~~~vpLV---lHGgSG~p~e~i~~ai----~~G--V~KiNi 250 (306)
T 3pm6_A 192 FGNVHGNYGPRGVQLDYERL-QRINEAVGERVGLV---LHGADPFTKEIFEKCI----ERG--VAKVNV 250 (306)
T ss_dssp SSCCSSCCCTTCCCCCHHHH-HHHHHHHTTTSEEE---ECSCTTCCHHHHHHHH----HTT--EEEEEE
T ss_pred cCccccCcCCCCCccCHHHH-HHHHHHhCCCCCEE---eeCCCCCCHHHHHHHH----HcC--CeEEEe
Confidence 98854555422233455433 33332221144433 4455 66666655444 555 444444
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=3.6 Score=37.32 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-CCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG-~~~i~ 173 (348)
.+.++..+.++.+.+.|+..|.++++..... ........++++.+++ .++++.++.|..+.+.++.+.+.| +|.|.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 3567888888888889999998877631110 1111123455566665 367887777777899999888888 89888
Q ss_pred cc
Q psy14485 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
+|
T Consensus 306 iG 307 (338)
T 1z41_A 306 IG 307 (338)
T ss_dssp EC
T ss_pred ec
Confidence 76
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=16 Score=32.54 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=56.3
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHH-HHhCCC
Q psy14485 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRL-KKVGLD 170 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~L-k~aG~~ 170 (348)
.+.+.|+++|-|-|+ ..|...+.+...++++..+..++.+....|. .++|+...+ ++-|+|
T Consensus 92 ~ai~~GFtSVMiDgS-~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD 170 (307)
T 3n9r_A 92 KAVKAGFTSVMIDAS-HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170 (307)
T ss_dssp HHHHHTCSEEEECCT-TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCS
T ss_pred HHHHhCCCcEEEECC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCC
Confidence 345679999988776 3333455666677777777778877765432 245666554 568999
Q ss_pred eeeccCCCCHHHHhc-cCCCCCHHHHH
Q psy14485 171 YYNHNLDTSPKLYGD-IISTRDYENRL 196 (348)
Q Consensus 171 ~i~~g~et~~e~l~~-i~~~~~~~~~~ 196 (348)
.+-+++.|+--.|+. -.+..+++...
T Consensus 171 ~LAvaiGt~HG~Yk~~~~p~Ld~~~L~ 197 (307)
T 3n9r_A 171 YLAPAIGTSHGAFKFKGEPKLDFERLQ 197 (307)
T ss_dssp EEEECSSCCSSSBCCSSSCCCCHHHHH
T ss_pred EEEEecCCcccccCCCCCCccCHHHHH
Confidence 999999986555652 23444655443
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=3.3 Score=37.66 Aligned_cols=77 Identities=10% Similarity=-0.023 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-CCeeec
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG-~~~i~~ 174 (348)
+.++..+.++.+.+.|+..|.+..|...+.. .......++++.+++ .++++.++.|..+.+.++.+.+.| +|.|.+
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 4567777777777888888887654221110 011223455666665 367777777777888888888887 888776
Q ss_pred c
Q psy14485 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 307 G 307 (340)
T 3gr7_A 307 G 307 (340)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=14 Score=32.90 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=62.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--ccHHHHHHHHHHHHh-cCcEEEEe------cCCCCH-HHHHHHH--
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKK-IGLETCLT------LGMLNE-NQAYRLK-- 165 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~~~l~~~i~~-~~~~i~~~------~g~l~~-e~l~~Lk-- 165 (348)
.+.+++.+.+..+.+.|++.|+...|+. |.. ....+-.++++.+++ .++.+.+. +..-+. ..++.|+
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDp-p~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~K 172 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDL-PPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRK 172 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCC-C------CCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCC-CCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 5778888888888899999987766632 211 112234556666665 34554432 333333 2455554
Q ss_pred -HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy14485 166 -KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 166 -~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
++|.+.+-- | .-.+.+...+.++.+++.|+.+ -++.|+
T Consensus 173 vdAGAdf~iT--Q----------~ffD~~~~~~f~~~~r~~Gi~v--PIi~GI 211 (304)
T 3fst_A 173 VDAGANRAIT--Q----------FFFDVESYLRFRDRCVSAGIDV--EIIPGI 211 (304)
T ss_dssp HHHTCCEEEE--C----------CCSCHHHHHHHHHHHHHTTCCS--CEECEE
T ss_pred HHcCCCEEEe--C----------ccCCHHHHHHHHHHHHhcCCCC--cEEEEe
Confidence 679887541 1 1246677777888888888743 445555
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=2.6 Score=38.83 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=55.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCC------CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWR------ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~------~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
-+++++.+.+++..+.|+..+-+ .|+.. .....+.+.+.++++..++.++.+.++.. ..+.++...++|+
T Consensus 169 ~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~g~ 246 (423)
T 3feq_A 169 DGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAY--TGRAIARAVRCGV 246 (423)
T ss_dssp CSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEE--EHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHcCC
Confidence 46788888888888888776533 22211 11135678899999999988877766554 4556777777899
Q ss_pred CeeeccCCCCHH
Q psy14485 170 DYYNHNLDTSPK 181 (348)
Q Consensus 170 ~~i~~g~et~~e 181 (348)
+++.++.-.+++
T Consensus 247 ~~i~H~~~~~~~ 258 (423)
T 3feq_A 247 RTIEHGNLVDEA 258 (423)
T ss_dssp CEEEEEEECCHH
T ss_pred CEEeccCcCCHH
Confidence 888876544443
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=84.50 E-value=4.4 Score=37.44 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=54.5
Q ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCC--HHH-HHHHHHhCCC
Q psy14485 97 ILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN--ENQ-AYRLKKVGLD 170 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~--~e~-l~~Lk~aG~~ 170 (348)
..++++..+.++.+.+. |+-.|-|.|. +. ..+...+.+.++..++.|+.++++.|... .+. .+.+...|.+
T Consensus 161 ~~~~e~a~~~~~~a~~~~~~~VvG~dL~g~-E~--~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~ 237 (380)
T 4gxw_A 161 EQDPDEAVAIVDWMKANRADEVAGIGIDYR-EN--DRPPELFWKAYRDARAAGFRTTAHAGEFGMPWRNVETAVDLLHVD 237 (380)
T ss_dssp TSCHHHHHHHHHHHHHTCCTTBCEEEEESC-CT--TCCGGGGHHHHHHHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCS
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeecCC-CC--CCCHHHHHHHHHHHHHcCCCeeeeccccCCchHHHHHHHHHcCCc
Confidence 35677777777665543 5667777765 22 22345678888888888999999988643 343 4455557999
Q ss_pred eeeccCCC
Q psy14485 171 YYNHNLDT 178 (348)
Q Consensus 171 ~i~~g~et 178 (348)
||.+|+-.
T Consensus 238 RIgHG~~~ 245 (380)
T 4gxw_A 238 RVDHGYTI 245 (380)
T ss_dssp EEEECGGG
T ss_pred ccccceee
Confidence 99999865
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.23 E-value=7.5 Score=32.94 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=52.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|+..|...+|.. ....+.+.+..+.+.+. ..+++..+.|..+.+.+..+.++|.+++.
T Consensus 129 l~~~~~~~~a~~a~eaGad~I~tstg~~-~gga~~~~i~~v~~~v~-~~ipVia~GGI~t~~da~~~l~aGA~~iG 202 (225)
T 1mzh_A 129 LNEEEIKKAVEICIEAGADFIKTSTGFA-PRGTTLEEVRLIKSSAK-GRIKVKASGGIRDLETAISMIEAGADRIG 202 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSCS-SSCCCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCCC-CCCCCHHHHHHHHHHhC-CCCcEEEECCCCCHHHHHHHHHhCchHHH
Confidence 5677888888888889999986654421 12234555555444432 25788889999999998888899999764
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=84.21 E-value=18 Score=31.64 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=85.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEec--------CCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--------GMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~--------g~l~~e~l~~Lk~aG~ 169 (348)
+++..+.+.++.+..+ ++.+-|++|.... ..+ +.+.++..++.++.++.-. -..-++.++..++.|+
T Consensus 50 lg~~~~~DlLe~ag~y-ID~lKfg~GTs~l---~~~-l~ekI~l~~~~gV~v~~GGTlfE~~l~qg~~~~yl~~~k~lGF 124 (276)
T 1u83_A 50 YPLQFFKDAIAGASDY-IDFVKFGWGTSLL---TKD-LEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGC 124 (276)
T ss_dssp CCHHHHHHHHHHHGGG-CCEEEECTTGGGG---CTT-HHHHHHHHHHTTCEEEECHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhhhh-cceEEecCcchhh---hHH-HHHHHHHHHHcCCeEeCCcHHHHHHHHcCcHHHHHHHHHHcCC
Confidence 5677776665544443 8888898873222 222 8888888888888886311 1245678999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-------CCCHHHHHHHHHHHHhcCCCCCee
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------SESRDQRAELIFQLANLNPYPESV 241 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-------get~e~~~~~l~~l~~l~~~~~~i 241 (348)
+.|.++-.|. .-+.+++.+.|+.+++. +.+-+.+ |- -.+++++++.++.-.+.+ .+.|
T Consensus 125 ~~IEISdGti---------~l~~~~~~~lI~~a~~~-f~Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dLeAG--A~~V 189 (276)
T 1u83_A 125 EYIEISNGTL---------PMTNKEKAAYIADFSDE-FLVLSEV--GSKDAELASRQSSEEWLEYIVEDMEAG--AEKV 189 (276)
T ss_dssp SEEEECCSSS---------CCCHHHHHHHHHHHTTT-SEEEEEC--SCCC------CCSTHHHHHHHHHHHHT--EEEE
T ss_pred CEEEECCCcc---------cCCHHHHHHHHHHHHhh-cEEeeec--cccCccccCCCCHHHHHHHHHHHHHCC--CcEE
Confidence 9999876652 24678899999999888 7665442 33 235677888887777776 4444
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.10 E-value=14 Score=32.13 Aligned_cols=200 Identities=17% Similarity=0.123 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-------ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD-------RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-------~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
+++..++.++.+++.|+.-|.++.- .|-. ...+.+..+.+..++.|+.+.+.+ ++.+.++.+.+. ++.
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~f--kprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~ 109 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAF--KPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEV--MDTRHVELVAKY-SDI 109 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSS--CCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CCGGGHHHHHHH-CSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEec--ccCCCcccccCccHHHHHHHHHHHHHcCCcEEEee--CCHHhHHHHHhh-CCE
Confidence 5788899999999999987777653 2211 125566555555566788886554 566668888888 899
Q ss_pred eeccCCC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy14485 172 YNHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 172 i~~g~et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.++--+ +..+++. +.+.|.+|. +=-|..-|.+++.+.++.+..-+ ...+.+- .
T Consensus 110 ~kIga~~~~n~~ll~~----------------~a~~~kPV~--lk~G~~~t~~e~~~Av~~i~~~G--n~~i~L~----~ 165 (262)
T 1zco_A 110 LQIGARNSQNFELLKE----------------VGKVENPVL--LKRGMGNTIQELLYSAEYIMAQG--NENVILC----E 165 (262)
T ss_dssp EEECGGGTTCHHHHHH----------------HTTSSSCEE--EECCTTCCHHHHHHHHHHHHTTT--CCCEEEE----E
T ss_pred EEECcccccCHHHHHH----------------HHhcCCcEE--EecCCCCCHHHHHHHHHHHHHCC--CCeEEEE----E
Confidence 8886533 2333333 333455442 23444447899999999888876 3332221 1
Q ss_pred CC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc---ccccccchhhHHHHHHhCcceeeeCCeec----cCCCCC--
Q psy14485 250 KG-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMS---AGRKEMGETTQAFCFLAGANSIFYGDKLL----TTDNTK-- 319 (348)
Q Consensus 250 ~g-T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s---~g~~~l~~~~~~~~l~~GAn~~~~~~~~~----~~~g~~-- 319 (348)
.| +-+.+++..+. .++.+...+....-..|-.+ .|...+-+.....++..||+++|.+.++. -.+|+.
T Consensus 166 RG~~~~~~y~~~~v--~L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl 243 (262)
T 1zco_A 166 RGIRTFETATRFTL--DISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQL 243 (262)
T ss_dssp CCBCCSCCSSSSBC--CTTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCTTTCB
T ss_pred CCCCCCCCcChhhc--CHHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccCChhhcCC
Confidence 12 11111111111 11222233333211111222 11111223556668899999998765431 124443
Q ss_pred -chHHHHHHHH
Q psy14485 320 -TNDDSKLLKK 329 (348)
Q Consensus 320 -~~~~~~~i~~ 329 (348)
+++..+++++
T Consensus 244 ~p~~~~~l~~~ 254 (262)
T 1zco_A 244 TFDDFLQLLKE 254 (262)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 3566666544
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=83.80 E-value=23 Score=31.46 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=92.5
Q ss_pred ecCCCCHHHHHHHHHhCCCeeecc-CCCCHHHHhccCC-CCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCCHHHHHHH
Q psy14485 152 TLGMLNENQAYRLKKVGLDYYNHN-LDTSPKLYGDIIS-TRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAEL 227 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g-~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~e~~~~~ 227 (348)
-++..+.-..+.+.++|++.+.++ ...+...+-.=.. .-+.++.+...+.+.+. .+++.+++=.|+| +.+++.++
T Consensus 22 ~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg-~~~~v~~t 100 (302)
T 3fa4_A 22 APGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYG-GPIMVART 100 (302)
T ss_dssp EEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTS-SHHHHHHH
T ss_pred EecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCC-CHHHHHHH
Confidence 355677778888999999998862 2111122221111 24889998888887764 6789999999987 47889999
Q ss_pred HHHHHhcCCCCCeeeccc-ccccCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCCce--eccccc-cccc--hhhHHH
Q psy14485 228 IFQLANLNPYPESVPINN-LVQIKGTPLYGSSILDPLEFIRTIAVARITM----PTSRI--RMSAGR-KEMG--ETTQAF 297 (348)
Q Consensus 228 l~~l~~l~~~~~~i~~~~-l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~l----p~~~i--~~s~g~-~~l~--~~~~~~ 297 (348)
.+.+.+.+ ...+.+-= ..|.+-..+...+..+.++...-+..++..- ++.-| |.-.-. +.+. -.-...
T Consensus 101 v~~l~~aG--aagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~a 178 (302)
T 3fa4_A 101 TEQYSRSG--VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRA 178 (302)
T ss_dssp HHHHHHTT--CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHH
T ss_pred HHHHHHcC--CcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHH
Confidence 99998887 66666532 2233222223345677888877777776542 34333 211100 1111 112233
Q ss_pred HHHhCcceeeeC
Q psy14485 298 CFLAGANSIFYG 309 (348)
Q Consensus 298 ~l~~GAn~~~~~ 309 (348)
...+|||.++..
T Consensus 179 y~eAGAD~ifi~ 190 (302)
T 3fa4_A 179 ARDAGADVGFLE 190 (302)
T ss_dssp HHTTTCSEEEET
T ss_pred HHHcCCCEEeec
Confidence 467999999764
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=83.50 E-value=18 Score=32.49 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHH-hCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHh-cCcEEEEe-cC--CCCHHHHHHHHHhCCCe-
Q psy14485 100 IESVITAAQKAK-SDGATRFCMGAAWRELK--DRDLDNIENMICEVKK-IGLETCLT-LG--MLNENQAYRLKKVGLDY- 171 (348)
Q Consensus 100 ~eei~~~~~~~~-~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~-~~~~i~~~-~g--~l~~e~l~~Lk~aG~~~- 171 (348)
.+++.+.++... +.|+.-|-+++..+.|. ..+.+.+.+.++.+.+ .++.+++- .| +.+.+.++.-.++|.+.
T Consensus 79 ~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~ 158 (323)
T 4djd_D 79 INEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGEN 158 (323)
T ss_dssp TTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCC
Confidence 345777777777 88999998876433442 2456678888888876 46666543 22 45668888888888552
Q ss_pred -eeccCCC--CHHHHhccC---------CCCCHHHHHHHHHHHHHcCC---eeeEeEeee-cCCCHHHHHHHHHHHHh
Q psy14485 172 -YNHNLDT--SPKLYGDII---------STRDYENRLNTLKNVRNVGI---NICCGGIIG-LSESRDQRAELIFQLAN 233 (348)
Q Consensus 172 -i~~g~et--~~e~l~~i~---------~~~~~~~~~~~i~~~~~~G~---~i~~~~i~G-lget~e~~~~~l~~l~~ 233 (348)
+--++.. .++++..+. ...+.+...+.++.+.++|+ ++..+-.+| +|.+.++-.+.++.++.
T Consensus 159 ~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 159 LLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp CEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred CeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 2112222 255554221 12245555666778889999 377787788 48899988888888876
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=83.31 E-value=20 Score=30.38 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=77.4
Q ss_pred HHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCe
Q psy14485 161 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 161 l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
...++++|++.+.++.-- |...+.+.-+.++.++++|+.+ |+=.||+.|. ..+..++ +..
T Consensus 81 ~~~l~~~Ga~~Vllghse---------RR~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 140 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE---------NRMILADLEAAIRRAEEVGLMT----MVCSNNPAVS-----AAVAALN--PDY 140 (225)
T ss_dssp HHHHHHTTCCEEEESCGG---------GCCBHHHHHHHHHHHHHHTCEE----EEEESSHHHH-----HHHHTTC--CSE
T ss_pred HHHHHHcCCCEEEECcch---------hcCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 778999999999976511 1134455778889999999964 3333566554 3345565 555
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|.+.+.- .-||-..- ...+++..-.+....|.+.++..|-..+| .+- .+........|+|.++.|+..
T Consensus 141 Iayep~w-aiGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~ilyggs-V~~-~n~~~~~~~~~vDG~LVG~a~ 208 (225)
T 1hg3_A 141 VAVEPPE-LIGTGIPV-SKAKPEVITNTVELVKKVNPEVKVLCGAG-IST-GEDVKKAIELGTVGVLLASGV 208 (225)
T ss_dssp EEECCTT-TTTTSCCT-TTSCTHHHHHHHHHHHHHCTTSEEEEESS-CCS-HHHHHHHHHTTCSEEEESHHH
T ss_pred EEEeChh-hhccCCCC-CCCChhHHHHHHHHHHhccCCCEEEEeCC-CCc-HHHHHHHHhCCCCEEEeCHHH
Confidence 5554432 23443110 23566667778888888766543332222 221 344555678899999888754
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=82.93 E-value=12 Score=31.93 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++++...+....-.|..-|++.+.+. + .+ .++++++++ . ++++.+-.|..++|.++.+. +|+|.+-+|
T Consensus 137 ~~~e~~~~~a~~a~~~g~~~VYld~sG~-~--~~----~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVG 208 (228)
T 3vzx_A 137 LNMDDIVAYARVSELLQLPIFYLEYSGV-L--GD----IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVG 208 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECTTS-C--CC----HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCC-c--CC----HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEC
Confidence 3578888888777767899999877432 2 12 466666666 4 68899999999999999998 799999875
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=82.93 E-value=16 Score=33.52 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=88.2
Q ss_pred HHHHHHHHhCCCeeeccCCCCHHHHhccCC--CCCHHHHHHHHHHHHHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 159 NQAYRLKKVGLDYYNHNLDTSPKLYGDIIS--TRDYENRLNTLKNVRNV-GINICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~--~~~~~~~~~~i~~~~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
+..+....+|.|.+.+.+...++. +.+ ..++..|++.++.+++. ++++.+-. +|.|-+.++ +..+.+.+
T Consensus 159 ~~~~~ve~~~adal~ihln~~qe~---~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s~e~----A~~l~~aG 230 (365)
T 3sr7_A 159 AGLQAVRDLQPLFLQVHINLMQEL---LMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGMDVKT----IQTAIDLG 230 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECHHHHH---TSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCCHHH----HHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEeccccccc---cCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCCHHH----HHHHHHcC
Confidence 445566688999988776543333 222 24677888999998874 77777664 577777654 45566777
Q ss_pred CCCCeeecccccccCCCCC--------------CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh
Q psy14485 236 PYPESVPINNLVQIKGTPL--------------YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 301 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~gT~l--------------~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~ 301 (348)
++.|.+.-. .||.+ .+...++. +.+. .++...++..|-+++|-.+ ..-...++.+
T Consensus 231 --ad~I~V~g~---GGt~~a~ie~~r~~~~~~~~~~g~pt~-~~L~---~v~~~~~~ipvia~GGI~~--g~Dv~KaLal 299 (365)
T 3sr7_A 231 --VKTVDISGR---GGTSFAYIENRRGGNRSYLNQWGQTTA-QVLL---NAQPLMDKVEILASGGIRH--PLDIIKALVL 299 (365)
T ss_dssp --CCEEECCCB---C--------------CGGGTTCSCBHH-HHHH---HHGGGTTTSEEEECSSCCS--HHHHHHHHHH
T ss_pred --CCEEEEeCC---CCcccchhhccccccccccccccccHH-HHHH---HHHHhcCCCeEEEeCCCCC--HHHHHHHHHc
Confidence 888877543 45443 12233332 2222 2233334444545555322 2334557889
Q ss_pred CcceeeeCCeeccC---CCCC-c--------hHHHHHHHHcCCC
Q psy14485 302 GANSIFYGDKLLTT---DNTK-T--------NDDSKLLKKLGIN 333 (348)
Q Consensus 302 GAn~~~~~~~~~~~---~g~~-~--------~~~~~~i~~~G~~ 333 (348)
||+.++.|..++.. .|.. . +++...+...|..
T Consensus 300 GAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~ 343 (365)
T 3sr7_A 300 GAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQ 343 (365)
T ss_dssp TCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999777543221 2311 1 3555666777875
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=82.05 E-value=22 Score=30.08 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=109.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC----CCCH----HHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG----MLNE----NQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g----~l~~----e~l~~Lk~aG~ 169 (348)
.+.+++.+.++++.+.|+..|++.-+ ......+.++ ++.++.-.| ..+. ...+. .+.|.
T Consensus 14 ~t~~~i~~l~~~A~~~~~~aVcv~p~-------~v~~a~~~l~-----gv~v~tvigFP~G~~~~~~k~~E~~~-i~~GA 80 (226)
T 1vcv_A 14 LTVDEAVAGARKAEELGVAAYCVNPI-------YAPVVRPLLR-----KVKLCVVADFPFGALPTASRIALVSR-LAEVA 80 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECGG-------GHHHHGGGCS-----SSEEEEEESTTTCCSCHHHHHHHHHH-HTTTC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECHH-------HHHHHHHHhC-----CCeEEEEeCCCCCCCchHHHHHHHHH-HHCCC
Confidence 57899999999999999999988432 2222222222 256654333 3333 34566 77899
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc-cc
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINN-LV 247 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~-l~ 247 (348)
+-|.+-+.- ..+ +...++...+-++.++++--....-+|+-. .-|.+++....+...+.+ .+.|.-+. |.
T Consensus 81 dEID~Vini--g~~----~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaG--ADfVKTSTGf~ 152 (226)
T 1vcv_A 81 DEIDVVAPI--GLV----KSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAG--AHFIKSSTGFA 152 (226)
T ss_dssp SEEEEECCH--HHH----HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEECCCSCC
T ss_pred CEEEEecch--hhh----cCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcC--CCEEEeCCCCC
Confidence 988754421 111 134667777777766663111133445544 347888988999999998 88887652 22
Q ss_pred c-cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh---Ccc
Q psy14485 248 Q-IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GAN 304 (348)
Q Consensus 248 P-~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~---GAn 304 (348)
| ...++.++....+.+...-|....+..=++..|.+++|-.+. +.....+.+ ||+
T Consensus 153 ~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~--~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 153 EEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTR--EQAKAIVDAIGWGED 211 (226)
T ss_dssp CHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSH--HHHHHHHHHHCSCSC
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCH--HHHHHHHHHHHCCCC
Confidence 1 112334444556777766665555555556778888775442 223334566 888
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=81.90 E-value=26 Score=30.75 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C---cEEEEecC-CCCHHHHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G---LETCLTLG-MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~---~~i~~~~g-~l~~e~l~~Lk~aG~~~i 172 (348)
.+++++.+.++.+.+.|+..+.+.+. .. ...+..+.++++.+++. . +.++.+.+ -+.......-.++|++.+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~Dt--~G-~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~v 228 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGDT--IG-RGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVF 228 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEET--TS-CCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCC--CC-CcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEE
Confidence 57899999999998999999998753 11 24567888999999873 2 34455333 233444445557899999
Q ss_pred eccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy14485 173 NHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
...+-. ..--|-.-+.+ -..++.+..++ +.|+.+. -+.+.+.+..+++.++
T Consensus 229 d~sv~GlG~cp~a~g~~GN~~~e~lv~~l~---~~g~~~~--------id~~~l~~~~~~~~~~ 281 (295)
T 1ydn_A 229 DASVGGLGGCPFAPGAKGNVDTVAVVEMLH---EMGFETG--------LDLDRLRSAGLFTQAL 281 (295)
T ss_dssp EEBTTCCSCBTTBTTSCCBCBHHHHHHHHH---HTTCBCC--------CCHHHHHHHHHHHHHH
T ss_pred EeccccCCCCCCCCCCcCChhHHHHHHHHH---hcCCCCC--------cCHHHHHHHHHHHHHH
Confidence 977644 22112211222 35676666554 4666542 2455566666665554
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=81.82 E-value=12 Score=31.90 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCcE-EEEecC----CCCH----HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc
Q psy14485 135 IENMICEVKKIGLE-TCLTLG----MLNE----NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV 205 (348)
Q Consensus 135 ~~~l~~~i~~~~~~-i~~~~g----~l~~----e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~ 205 (348)
+.+.++.+++.|+. +.+... ..++ +..+.++++|+.-..++.... .+.+...+.++.+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~----------~~~~~~~~~i~~A~~l 101 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM----------KSEEEIDRAFDYAKRV 101 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE----------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc----------CCHHHHHHHHHHHHHh
Confidence 45556666665442 333322 2333 334455566776544432111 4567777778888888
Q ss_pred CCee
Q psy14485 206 GINI 209 (348)
Q Consensus 206 G~~i 209 (348)
|.+.
T Consensus 102 Ga~~ 105 (257)
T 3lmz_A 102 GVKL 105 (257)
T ss_dssp TCSE
T ss_pred CCCE
Confidence 8753
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.82 E-value=11 Score=32.06 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC---------CCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWR---------ELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKK 166 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---------~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~ 166 (348)
++.+++...++...+.|...|--++|.. ++...+++...-+.+.++.. .+.+-++.|..+.+.+..|.+
T Consensus 125 Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~ 204 (226)
T 1vcv_A 125 LRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVD 204 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 4678888888888888998887766632 02234555554444444443 377888889999999888888
Q ss_pred h---CCC
Q psy14485 167 V---GLD 170 (348)
Q Consensus 167 a---G~~ 170 (348)
+ |.+
T Consensus 205 a~~~Ga~ 211 (226)
T 1vcv_A 205 AIGWGED 211 (226)
T ss_dssp HHCSCSC
T ss_pred HHHCCCC
Confidence 8 988
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.44 E-value=5.8 Score=34.29 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy14485 107 AQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
++.+.+.|+..|++.+... .....+ .++++.+++ .++++.++.|.-+.+.+..+.++|++.+-+|
T Consensus 162 ~~~~~~~G~~~i~~t~~~~~g~~~g~~----~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 162 VVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHTTCSEEEEEETTTTTTCSCCC----HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHcCCCEEEEEeecCCCCcCCCC----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 3445567999998865311 111223 345566665 4788888999999999999999999998875
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=81.42 E-value=24 Score=29.93 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=78.4
Q ss_pred HHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCe
Q psy14485 161 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 161 l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
+..++++|++.+.++.-- |...+.+.-+.++.++++|+.+ |+=.||+.|. ..+..++ +..
T Consensus 78 ~~~l~~~Ga~~Vllghse---------RR~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 137 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSE---------APLKLNDLARLVAKAKSLGLDV----VVCAPDPRTS-----LAAAALG--PHA 137 (226)
T ss_dssp HHHHHHHTCCEEEECCTT---------SCCBHHHHHHHHHHHHHTTCEE----EEEESSHHHH-----HHHHHTC--CSE
T ss_pred HHHHHHcCCCEEEEeeee---------ccCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 778999999999976521 1134455677889999999964 3333566554 3345566 566
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
|.+.+.- .-||...- ...+++..-.+....|.+.++..|-..+| .+- .+........|+|.++.|+...
T Consensus 138 Iayep~w-aiGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~ilyggs-V~~-~n~~~~~~~~giDG~LVG~a~l 206 (226)
T 1w0m_A 138 VAVEPPE-LIGTGRAV-SRYKPEAIVETVGLVSRHFPEVSVITGAG-IES-GDDVAAALRLGTRGVLLASAAV 206 (226)
T ss_dssp EEECCGG-GTTTSCCH-HHHCHHHHHHHHHHHHHHCTTSEEEEESS-CCS-HHHHHHHHHTTCSEEEECHHHH
T ss_pred EEEcChh-hhccCCCC-CCCChhHHHHHHHHHHhccCCCEEEEeCC-CCc-HHHHHHHHhCCCCEEEECHHHH
Confidence 6555532 23443110 13566777778888888766543332222 221 3445556789999998887543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=6.8 Score=35.68 Aligned_cols=77 Identities=21% Similarity=0.117 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-CCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG-~~~i~ 173 (348)
+.++.+..++.+.+.|+..|.+..|+..+.. ....+..++++.+++ .++.+.++.+..+.+.++.+.+.| +|.|.
T Consensus 237 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~ 316 (349)
T 3hgj_A 237 SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVL 316 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEE
Confidence 4667777777777778887777643221110 011123445555555 356666666666777777777777 77777
Q ss_pred cc
Q psy14485 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
+|
T Consensus 317 iG 318 (349)
T 3hgj_A 317 LG 318 (349)
T ss_dssp ES
T ss_pred ec
Confidence 65
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=80.65 E-value=5.7 Score=33.97 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHhCCCCEEEEeccCCC--CCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy14485 107 AQKAKSDGATRFCMGAAWRE--LKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~--~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
++.+.+.|+..|++.+...+ ....+. ++++.+++ .++++.++.|.-+.+.+..+.++|++.+-++= .++
T Consensus 158 ~~~~~~~G~~~i~~~~~~~~g~~~g~~~----~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgs----al~ 229 (252)
T 1ka9_F 158 AVKGVELGAGEILLTSMDRDGTKEGYDL----RLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAAS----VFH 229 (252)
T ss_dssp HHHHHHHTCCEEEEEETTTTTTCSCCCH----HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HHH
T ss_pred HHHHHHcCCCEEEEecccCCCCcCCCCH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHH----HHH
Confidence 34455579998877642111 112233 44444544 47888889998888999999999999987642 222
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCeee
Q psy14485 184 GDIISTRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
. ...++++. .+.+.+.|+.+.
T Consensus 230 ~---~~~~~~~~---~~~l~~~~~~~~ 250 (252)
T 1ka9_F 230 F---GEIPIPKL---KRYLAEKGVHVR 250 (252)
T ss_dssp T---TSSCHHHH---HHHHHHTTCCBC
T ss_pred c---CCCCHHHH---HHHHHHCCCCcC
Confidence 1 22355544 444567787664
|
| >3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* | Back alignment and structure |
|---|
Probab=80.61 E-value=7.9 Score=34.50 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc-CcEEEEec-----C--CCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcC
Q psy14485 135 IENMICEVKKI-GLETCLTL-----G--MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 206 (348)
Q Consensus 135 ~~~l~~~i~~~-~~~i~~~~-----g--~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G 206 (348)
+.+.++.|++. ++.+-++| + ..+.+.++.|+++|++.|.+ ..+.++.++.....+.+++.|
T Consensus 185 ~~eaI~~I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv-----------~~~~~~~~~~~~~~~lA~~~g 253 (301)
T 3o0f_A 185 THEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEV-----------WHRGNPPEQRERLLTIAARHD 253 (301)
T ss_dssp HHHHHHHHHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEE-----------ESTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEE-----------eCCCCCHHHHHHHHHHHHHcC
Confidence 45566666654 45666666 2 34566777777777766642 223456666666677777777
Q ss_pred Ce
Q psy14485 207 IN 208 (348)
Q Consensus 207 ~~ 208 (348)
+-
T Consensus 254 L~ 255 (301)
T 3o0f_A 254 LL 255 (301)
T ss_dssp CE
T ss_pred Cc
Confidence 64
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 348 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 3e-86 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 260 bits (665), Expect = 3e-86
Identities = 176/305 (57%), Positives = 231/305 (75%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 4 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 63
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 64 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 123
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
C+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI
Sbjct: 124 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 183
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+C GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 184 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 243
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +
Sbjct: 244 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 303
Query: 329 KLGIN 333
KLG+N
Sbjct: 304 KLGLN 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.93 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.54 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.57 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.67 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 96.4 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 96.26 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.2 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 96.06 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 95.83 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 95.27 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 94.87 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.41 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 94.13 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.09 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 93.49 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 92.98 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 92.32 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 91.32 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 91.28 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 90.85 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 89.83 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 89.26 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 88.98 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 88.87 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 87.68 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 87.26 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 87.06 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 86.35 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 86.3 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 85.6 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 84.98 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 84.29 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 83.54 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 82.73 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 82.18 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 82.04 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 81.89 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 81.31 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 81.08 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 81.07 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 80.72 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 80.49 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 80.48 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 80.12 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-56 Score=411.69 Aligned_cols=311 Identities=57% Similarity=0.992 Sum_probs=284.0
Q ss_pred CCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHH
Q psy14485 26 SLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 105 (348)
Q Consensus 26 ~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 105 (348)
+++||+||+++|++.|+.+|+..|+++++++|+++.+++...+++.||+|+++|.||+|++.++.....+..++++++++
T Consensus 1 ~~r~s~ee~~~L~~~~~~dL~~~A~~v~r~~~~~~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~ 80 (312)
T d1r30a_ 1 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLE 80 (312)
T ss_dssp CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHcCCHHHHHHHHHHHHHHHcCCCEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHH
Confidence 36899999999999999999999999999889667666666665559999999999999886544334445689999999
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhc
Q psy14485 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 185 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~ 185 (348)
+++.+.+.|+.++++++|.........+++.++++.++...+.++++.+.++++.++.|++||++++.+++||+++.+..
T Consensus 81 ~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~~ 160 (312)
T d1r30a_ 81 SARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGN 160 (312)
T ss_dssp HHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHH
T ss_pred HHHHHHHcCCEEEEEccCCCCCchhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEecccchhhhhhcc
Confidence 99999999999999998854444567889999999999888999999999999999999999999999999998889999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHH
Q psy14485 186 IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEF 265 (348)
Q Consensus 186 i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~ 265 (348)
+++++++++++++++.++++|+.+++++|+|+|||.+|+++++..+++++..++.++++++.|.|||||++.++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~ 240 (312)
T d1r30a_ 161 IITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 240 (312)
T ss_dssp HCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999997557789999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchh
Q psy14485 266 IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336 (348)
Q Consensus 266 ~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~ 336 (348)
++++|++|+++|+..|+++++|++++++.++.+|.+|||++|.|+++++.+|++.+++.+||+++||+|.+
T Consensus 241 l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~~~~~~~~~~~i~~~G~~P~~ 311 (312)
T d1r30a_ 241 IRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQ 311 (312)
T ss_dssp HHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCCCCCHHHHHHHHHHcCCCcCC
Confidence 99999999999999999998899999999999999999999999999899999999999999999999986
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.8e-26 Score=217.81 Aligned_cols=209 Identities=12% Similarity=0.179 Sum_probs=169.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCccc
Q psy14485 59 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRD 131 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~ 131 (348)
+..+.++ |+| ++|+..|.||++++..... ..+| .+.+.++++...+ ..+..++|+|| +|+..+
T Consensus 47 ~~plsLY--iHi--PFC~~~C~yC~~~~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~~~~~~v~~i~~GGG--TPt~L~ 116 (441)
T d1olta_ 47 ERPLSLY--VHI--PFCHKLCYFCGCNKIVTRQQHKADQY----LDALEQEIVHRAPLFAGRHVSQLHWGGG--TPTYLN 116 (441)
T ss_dssp TSCEEEE--EEE--CEESSCCTTCCSSCEECSCTHHHHHH----HHHHHHHHHHHGGGGTTCCEEEEEEEES--CGGGSC
T ss_pred CCceEEE--EEe--CCCCCCCCCCcCeeecCCCcchHHHH----HHHHHHHHHHhhHhcCCCccceeEecCC--CcCCCC
Confidence 3444443 444 9999999999987743221 1223 3555555544332 24678899988 577778
Q ss_pred HHHHHHHHHHHHhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHH
Q psy14485 132 LDNIENMICEVKKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVR 203 (348)
Q Consensus 132 ~~~~~~l~~~i~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~ 203 (348)
.+.+.++++.+++. .+.+.++|..++.+.++.|+++|++|+++|+|| ++++++.++|.++.+++.++++.++
T Consensus 117 ~~~l~~ll~~l~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r 196 (441)
T d1olta_ 117 KAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAR 196 (441)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHH
Confidence 89999999999873 234456889999999999999999999999999 8999999999999999999999999
Q ss_pred HcCCe-eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHC
Q psy14485 204 NVGIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-----SSILDPLEFIRTIAVARITM 276 (348)
Q Consensus 204 ~~G~~-i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-----~~~~~~~~~~~~~a~~R~~l 276 (348)
++|+. +++++|||+ |||.+++.++++.+.+++ |++|++++|...|+|.... ...+++++.++++..+...|
T Consensus 197 ~~g~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~--pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L 274 (441)
T d1olta_ 197 EIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFL 274 (441)
T ss_dssp HTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred hcccceeecccccccCCcchHHHHHHHHHHHhhC--CCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHH
Confidence 99995 999999999 999999999999999999 9999999999989876543 24588999999999988877
Q ss_pred CCC
Q psy14485 277 PTS 279 (348)
Q Consensus 277 p~~ 279 (348)
...
T Consensus 275 ~~~ 277 (441)
T d1olta_ 275 TQS 277 (441)
T ss_dssp HHT
T ss_pred HHc
Confidence 553
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.54 E-value=2.7e-13 Score=122.94 Aligned_cols=206 Identities=18% Similarity=0.264 Sum_probs=143.5
Q ss_pred CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy14485 59 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
|+.+... -|++ |+.|+.+|.||......... ..+-..++.|++.+.++++.+.|+..|.++|| +.+. ...+
T Consensus 8 ~r~~~~l-~iei-T~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GG-Ep~l---~~~~ 81 (327)
T d1tv8a_ 8 GRPIRDL-RLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGG-EPLM---RRDL 81 (327)
T ss_dssp SCBCCEE-EEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESS-CGGG---STTH
T ss_pred CCccCcE-EEEe-ccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCC-cccc---cccH
Confidence 4555422 3678 99999999999754322111 11223489999999999999999999999888 3221 2345
Q ss_pred HHHHHHHHhc-Cc--EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeee
Q psy14485 136 ENMICEVKKI-GL--ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 136 ~~l~~~i~~~-~~--~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
.+++....+. +. .+..+.+.++++.++.|+++|++.+.+++++ .++.++.++. +..++...+.++.++++|+.+.
T Consensus 82 ~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~~~ 161 (327)
T d1tv8a_ 82 DVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVK 161 (327)
T ss_dssp HHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCCCcc
Confidence 6666666553 22 2445677899999999999999999999999 6888888765 5689999999999999999887
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHH
Q psy14485 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~ 272 (348)
....+--+.+.+++.+.++.+...+ .+...+....+..+.........+.++........
T Consensus 162 ~~~~v~~~~n~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (327)
T d1tv8a_ 162 VNVVIQKGINDDQIIPMLEYFKDKH--IEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQH 221 (327)
T ss_dssp EEEEECTTTTGGGHHHHHHHHHHTT--CCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHH
T ss_pred eeEEEecCccccccHHHHHHHHhhc--cccceeeeecccCcccccccccccHHHHHHHHHHh
Confidence 7766544778888888888888887 44333333333333333333445566655544443
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.57 E-value=0.0034 Score=54.08 Aligned_cols=209 Identities=11% Similarity=0.102 Sum_probs=135.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC-----CcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL-----KDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-----~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
++.++.++.++.+.+.|++.|-++.+...+ .........+.++.+.. ..+......+.-..+.+....+.|
T Consensus 26 ~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (289)
T d1nvma2 26 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 105 (289)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHhc
Confidence 789999999999999999999775431111 00111122333444433 233444566777888888899999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+.... ...+...+.++.+++.|+.+...++....-+.+.+.+..+.+.+++ ++.|.+.
T Consensus 106 ~~~~r~~~~~-----------~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~I~l~---- 168 (289)
T d1nvma2 106 ARVVRVATHC-----------TEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYMA---- 168 (289)
T ss_dssp CCEEEEEEET-----------TCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEEE----
T ss_pred ccceEEEeeh-----------hhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhcccc--ceeeeec----
Confidence 8877643221 1233445678899999998877766544667788999999999998 7765432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCC
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~l-p~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~ 319 (348)
.| ....+|.++.+++...|..+ |+..+.+- -|+ +.......|+.+||+.+ +. |+ .+.+..
T Consensus 169 --DT----~G~~~P~~v~~~v~~l~~~~~~~~~i~~H--~Hn~~g~a~an~l~A~~~G~~~id~si~GlG~---~~GN~~ 237 (289)
T d1nvma2 169 --DS----GGAMSMNDIRDRMRAFKAVLKPETQVGMH--AHHNLSLGVANSIVAVEEGCDRVDASLAGMGA---GAGNAP 237 (289)
T ss_dssp --CT----TCCCCHHHHHHHHHHHHHHSCTTSEEEEE--CBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCB
T ss_pred --ch----hhcccchhHHHHHHHHHHHhcccccceee--echHHHHHHHHHHHHHHhCCcEeeccccccCC---CCCCcc
Confidence 22 23457889999999999887 44333321 122 22334557899999988 11 22 123334
Q ss_pred chHHHHHHHHcCCCc
Q psy14485 320 TNDDSKLLKKLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~~~G~~p 334 (348)
.+++..++++.|+..
T Consensus 238 tE~lv~~l~~~g~~~ 252 (289)
T d1nvma2 238 LEVFIAVAERLGWNH 252 (289)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHhcCCCC
Confidence 578899999999963
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.67 E-value=0.016 Score=47.96 Aligned_cols=204 Identities=11% Similarity=0.075 Sum_probs=113.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCH-HHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNE-NQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~ 173 (348)
.+...+.++++.+.+.|++.+++ .+|-.-|.. .+ -.++++.+++ ..+.+.++.-..++ ..++.+.++|++.+.
T Consensus 20 ~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-t~--~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~ 96 (230)
T d1rpxa_ 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-TI--GPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-CC--CHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-cc--ChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeE
Confidence 45567777888888889988765 344232221 11 1245556654 34545555444444 678899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.. ..+..+.+..++++|.++ ++.+......+.+...+ . .++.+-++... ||..
T Consensus 97 ~H~E~~~-----------~~~~~~~i~~ik~~g~k~--Gialnp~T~~~~l~~~l----~---~vD~VllM~V~--PGf~ 154 (230)
T d1rpxa_ 97 VHCEQSS-----------TIHLHRTINQIKSLGAKA--GVVLNPGTPLTAIEYVL----D---AVDLVLIMSVN--PGFG 154 (230)
T ss_dssp EECSTTT-----------CSCHHHHHHHHHHTTSEE--EEEECTTCCGGGGTTTT----T---TCSEEEEESSC--TTCS
T ss_pred Eeccccc-----------cccHHHHHHHHHHcCCeE--EEEeCCCCCHHHHHHHH----h---hCCEEEEEEec--CCcc
Confidence 8887521 012445678888899876 43444444434332221 1 26777777654 4543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcC
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 331 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G 331 (348)
=+...+...+...++.......-++..|.+-+|- ..+.......+|||.++.|..+... ....+.++.++++.
T Consensus 155 GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGI---n~~~i~~l~~~Gad~~V~GS~if~~--~d~~~~i~~lk~~~ 227 (230)
T d1rpxa_ 155 GQSFIESQVKKISDLRKICAERGLNPWIEVDGGV---GPKNAYKVIEAGANALVAGSAVFGA--PDYAEAIKGIKTSK 227 (230)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC---CTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHTCC
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCceEEEEECCc---CHHHHHHHHHcCCCEEEEChHHHCC--CCHHHHHHHHHHhc
Confidence 2222222222222222222333445556665542 2334455789999999988655332 23455666666543
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=96.40 E-value=0.13 Score=43.12 Aligned_cols=134 Identities=18% Similarity=0.267 Sum_probs=91.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+++..++.++.+.+.|+.-|=++|-.+.|.. ..++++..+++.+++.++ .++..+...+.++...++|++-
T Consensus 23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~--~iSIDT~~~eVa~~al~~Ga~i 100 (264)
T d1ad1a_ 23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDV--KISVDTFRSEVAEACLKLGVDI 100 (264)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSS--EEEEECSCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCc--ccchhhhhHHHHHHHHhcCCcE
Confidence 58899999999999999999999875443322 235567777777776554 4578889999999999999999
Q ss_pred ee-c-cCCCCHHHHhcc----------CC---CC---CHH----HHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHHH
Q psy14485 172 YN-H-NLDTSPKLYGDI----------IS---TR---DYE----NRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAE 226 (348)
Q Consensus 172 i~-~-g~et~~e~l~~i----------~~---~~---~~~----~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~~ 226 (348)
|+ + +...++++++.+ +. .. .+. ...+.++.+.++|+. +..+-=+|+|-|.++=.+
T Consensus 101 INDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ 180 (264)
T d1ad1a_ 101 INDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAE 180 (264)
T ss_dssp EEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHH
T ss_pred eeccccccccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCccccchhHHH
Confidence 98 5 334456666522 21 11 123 344556667788983 556655667888887555
Q ss_pred HHHHHHh
Q psy14485 227 LIFQLAN 233 (348)
Q Consensus 227 ~l~~l~~ 233 (348)
.++.+..
T Consensus 181 ll~~l~~ 187 (264)
T d1ad1a_ 181 VMARLDE 187 (264)
T ss_dssp HHHCHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.26 E-value=0.041 Score=45.06 Aligned_cols=184 Identities=13% Similarity=0.108 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--eccCCCCC-cccHHHHHHHHHHHHh-cCcEEEEecCCCCH-HHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCM--GAAWRELK-DRDLDNIENMICEVKK-IGLETCLTLGMLNE-NQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~-~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~ 173 (348)
+...+.++++.+.+.|++.+++ .+|-..|. .... +.++.+++ ..+.+.++.-..++ ..++.+.++|.+.+.
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~----~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~ 87 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVPNISFGA----DVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 87 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCH----HHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCH----HHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEE
Confidence 4456667777778889998876 33422221 1223 34556665 34544444443333 478999999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.+ +..+.++.+++.|.+++. -+......+.+... +. ..+.+-++... ||..
T Consensus 88 ~H~E~~~-------------~~~~~i~~i~~~g~~~Gi--al~p~T~~~~~~~~------l~-~id~vliM~V~--pG~~ 143 (217)
T d2flia1 88 IHTESTR-------------HIHGALQKIKAAGMKAGV--VINPGTPATALEPL------LD-LVDQVLIMTVN--PGFG 143 (217)
T ss_dssp EEGGGCS-------------CHHHHHHHHHHTTSEEEE--EECTTSCGGGGGGG------TT-TCSEEEEESSC--TTCS
T ss_pred ecccccc-------------CHHHHHHHHHhcCCeEEE--EecCCcchhHHHhH------Hh-hcCEEEEEEEc--Cccc
Confidence 8887632 134557888889987643 33334444433221 11 15677766664 5532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
=....+...+...++-......-++..|.+.+|- ..+.......+|||.++.|..+.
T Consensus 144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGI---n~~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV---DNKTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC---CTTTHHHHHHHTCCEEEESHHHH
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCC---CHHHHHHHHHCCCCEEEEchHHh
Confidence 1111222222222222222222334446665542 23345557789999999886543
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.20 E-value=0.028 Score=46.23 Aligned_cols=202 Identities=11% Similarity=0.032 Sum_probs=112.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCH-HHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNE-NQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~ 173 (348)
.+...+.++++.+.+.|+..+++ .+|-..|.. .+ -.++++.++. ....+.++....++ ..++.+.++|.+.+.
T Consensus 12 ~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-t~--~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~ 88 (221)
T d1tqja_ 12 ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI-TI--GPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIIS 88 (221)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-CB--CHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc-cc--CcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEE
Confidence 34556777777888889998865 445232322 11 1245566665 35555555443333 568899999999999
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
+-+|+ +. .+..+.+..+++.|+.++.. +......+.+... .+. .+.+-++...| |-
T Consensus 89 ~H~E~~~~------------~~~~~~~~~i~~~g~~~Gia--l~p~T~~~~l~~~----l~~---~d~vlvM~V~p--G~ 145 (221)
T d1tqja_ 89 VHVEHNAS------------PHLHRTLCQIRELGKKAGAV--LNPSTPLDFLEYV----LPV---CDLILIMSVNP--GF 145 (221)
T ss_dssp EECSTTTC------------TTHHHHHHHHHHTTCEEEEE--ECTTCCGGGGTTT----GGG---CSEEEEESSCC----
T ss_pred EeeccccC------------hhhHHHHHHHHHCCCCEEEE--ecCCCcHHHHHHH----Hhh---hcEEEEEEecC--CC
Confidence 88876 21 12445677788899876544 3343333433222 222 56777766654 42
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHc
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 330 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~ 330 (348)
.=+...+...+...++....+..-++..|.+-+|- ..+.......+|||.++.|..+... ..+.+.++-+++.
T Consensus 146 ~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGI---n~~~i~~l~~~Gad~~V~GS~if~~--~d~~~~i~~lr~~ 218 (221)
T d1tqja_ 146 GGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGL---KPNNTWQVLEAGANAIVAGSAVFNA--PNYAEAIAGVRNS 218 (221)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSC---CTTTTHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHTC
T ss_pred CCcccchhhHHHHHHHHhhhhccccceEEEEECCc---CHHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHHHHHhc
Confidence 21112222333344444444444556566666542 1233445678999999988655332 2345555555544
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.06 E-value=0.042 Score=45.05 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=109.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+...+.++++.+.+.|++.+++ .+|-.-|. .. .-.+.++.+++ ....+.++.... +.+.+..+.++|.+++.
T Consensus 11 ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn-~t--~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~ 87 (220)
T d1h1ya_ 11 SDFANLAAEADRMVRLGADWLHMDIMDGHFVPN-LT--IGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT 87 (220)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-BC--BCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeecCccccc-cc--cCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceee
Confidence 34556777777888889998765 34422221 11 12355666665 345555444333 33568899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy14485 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..|+... ...+.++.+++.|.+++.. +......+.+... +..++ ..+.+-++... ||.
T Consensus 88 ~H~E~~~~------------~~~~~i~~i~~~g~~~Gla--l~p~t~~~~~~~~---l~~~~-~~d~vlim~v~--PG~- 146 (220)
T d1h1ya_ 88 FHIEVSRD------------NWQELIQSIKAKGMRPGVS--LRPGTPVEEVFPL---VEAEN-PVELVLVMTVE--PGF- 146 (220)
T ss_dssp EEGGGCTT------------THHHHHHHHHHTTCEEEEE--ECTTSCGGGGHHH---HHSSS-CCSEEEEESSC--TTC-
T ss_pred ecccccch------------hHHHHHHHHHHcCCCccee--eccccchhHHHHH---Hhccc-ccceEEEEecC--CCC-
Confidence 98876211 2335577788899876533 3333344444333 33333 14666666554 442
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..++. . ...++-+..+|...|+..|.+-+|- ..+.......+|||.++.|..+.
T Consensus 147 -~GQ~f-~-~~~l~kI~~l~~~~~~~~I~VDGGI---n~~~i~~l~~aGad~~V~GS~if 200 (220)
T d1h1ya_ 147 -GGQKF-M-PEMMEKVRALRKKYPSLDIEVDGGL---GPSTIDVAASAGANCIVAGSSIF 200 (220)
T ss_dssp -SSCCC-C-GGGHHHHHHHHHHCTTSEEEEESSC---STTTHHHHHHHTCCEEEESHHHH
T ss_pred -ccccc-c-hhhhHHHHHHHhcCCCceEEEEecC---CHHHHHHHHHCCCCEEEECHHHH
Confidence 22211 1 1334445566788888777776652 23344557789999999887654
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=95.83 E-value=0.15 Score=43.36 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=122.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC-------CcccHHHHHHHHHHHHhcCcEEEEec----C--CCCH----HH
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWREL-------KDRDLDNIENMICEVKKIGLETCLTL----G--MLNE----NQ 160 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-------~~~~~~~~~~l~~~i~~~~~~i~~~~----g--~l~~----e~ 160 (348)
++.++-++.++.+.+.|++.|=++++. .+ ...+.+....+........+...+.. + .... ..
T Consensus 30 ~~~~~ki~i~~~L~~~Gv~~IEvg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (303)
T d1rqba2 30 MAMEDMVGACADIDAAGYWSVECWGGA-TYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRF 108 (303)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETT-HHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCc-ChHHHHHHhcCchHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHH
Confidence 677888888888999999999876541 11 00111222222222222222222221 0 1122 22
Q ss_pred HHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCC
Q psy14485 161 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 161 l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~ 238 (348)
+....+.+.+.+.. .......+....+++.+++.|..+...+.... ..+++.+.+.+..+.+.+ +
T Consensus 109 ~~~~~~~~~~~~r~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~ 175 (303)
T d1rqba2 109 VDKSAENGMDVFRV-----------FDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--A 175 (303)
T ss_dssp HHHHHHTTCCEEEE-----------CCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHhhhhHHhh-----------hhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcC--C
Confidence 33344445554432 11223567778889999999987766555444 457888999999999998 7
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccc---cchhhHHHHHHhCccee---ee--C
Q psy14485 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--G 309 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~l-p~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~ 309 (348)
+.+.+. .| ....+|.++.+++...|..+ |+..+.+- -|| +..-....|+.+||+.+ +. |
T Consensus 176 ~~i~l~------DT----~G~~~P~~v~~li~~l~~~~~~~i~i~~H--~Hnd~Gla~AN~laA~~aG~~~id~ti~GlG 243 (303)
T d1rqba2 176 DSIALK------DM----AALLKPQPAYDIIKAIKDTYGQKTQINLH--CHSTTGVTEVSLMKAIEAGVDVVDTAISSMS 243 (303)
T ss_dssp SEEEEE------ET----TCCCCHHHHHHHHHHHHHHHCTTCCEEEE--EBCTTSCHHHHHHHHHHTTCSEEEEBCGGGC
T ss_pred cEEeec------Cc----cchhhhHHHHHHHHHHHhhcCCcccceec--cCchHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 776543 22 13457889999999998776 55433321 132 22234566899999988 11 2
Q ss_pred CeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 310 DKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 310 ~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+ .+.+.+.+++..+++++|+.+
T Consensus 244 ~---~~GN~~te~lv~~L~~~g~~t 265 (303)
T d1rqba2 244 L---GPGHNPTESVAEMLEGTGYTT 265 (303)
T ss_dssp S---TTSBCBHHHHHHHTTTSSEEC
T ss_pred C---CCCCccHHHHHHHHHhcCCCC
Confidence 2 133444578888999999864
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.27 E-value=0.44 Score=39.92 Aligned_cols=134 Identities=10% Similarity=0.185 Sum_probs=87.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+.++.++.++.+.+.|+.-|=++|-.+.|. ....+++..+++.+++.++.+ +..+...+.++..-++|++-
T Consensus 22 ~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~i--SIDT~~~~Va~~al~~Ga~i 99 (270)
T d1eyea_ 22 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITV--SIDTMRADVARAALQNGAQM 99 (270)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceee--chHhhhHHHHHHHHhcCCeE
Confidence 5899999999999999999998887533332 134567777778777766654 78889999999999999998
Q ss_pred ee-c-cCCCCHHHHh----------ccC-CC------C---C--------HHHHHHHHHHHHHcCCe---eeEeEeeecC
Q psy14485 172 YN-H-NLDTSPKLYG----------DII-ST------R---D--------YENRLNTLKNVRNVGIN---ICCGGIIGLS 218 (348)
Q Consensus 172 i~-~-g~et~~e~l~----------~i~-~~------~---~--------~~~~~~~i~~~~~~G~~---i~~~~i~Glg 218 (348)
++ + |...+++++. .++ ++ + . .....+.++.+.+.|+. +..+-=+|+|
T Consensus 100 INDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiGFg 179 (270)
T d1eyea_ 100 VNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFA 179 (270)
T ss_dssp EEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEccccccC
Confidence 88 5 4444445543 111 00 0 1 13445566777788883 5566556668
Q ss_pred CCHHHHHHHHHHHHh
Q psy14485 219 ESRDQRAELIFQLAN 233 (348)
Q Consensus 219 et~e~~~~~l~~l~~ 233 (348)
-|.++=.+.++.+.+
T Consensus 180 Kt~~~n~~lL~~l~~ 194 (270)
T d1eyea_ 180 KTAQHNWAILHALPE 194 (270)
T ss_dssp CCHHHHHHHHHTHHH
T ss_pred cccchHHHHHHHHHh
Confidence 888765555444433
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=94.87 E-value=0.43 Score=40.05 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=101.0
Q ss_pred CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHH
Q psy14485 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLD 133 (348)
Q Consensus 60 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~ 133 (348)
.+..+.+++|+ |+- +|+. .+ .| .+++.+++.++.+.+.|+.-|=++|-.+.|.. ...+
T Consensus 17 ~~~~iMGIlNi-TpD--------SFsd---gg--~~--~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~ 80 (273)
T d1tx2a_ 17 EKTLIMGILNV-TPD--------SFSD---GG--SY--NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIK 80 (273)
T ss_dssp SSCEEEEECCC-CCC--------TTCS---SC--BH--HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHH
T ss_pred CCceEEEEEeC-CCC--------CCCC---CC--cC--CCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHH
Confidence 44566777777 442 3332 22 33 57899999999999999999988875433321 1234
Q ss_pred HHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeee-c-cCCCCHHHHhc----------cCC-CC---------
Q psy14485 134 NIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYN-H-NLDTSPKLYGD----------IIS-TR--------- 190 (348)
Q Consensus 134 ~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~-~-g~et~~e~l~~----------i~~-~~--------- 190 (348)
++..+++.+++ .++. ++..+...+.++...++|++-|+ + |...++++++. ++. +.
T Consensus 81 rl~p~i~~~~~~~~~~--iSIDT~~~~Va~~al~~G~~iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~ 158 (273)
T d1tx2a_ 81 RVVPMIQAVSKEVKLP--ISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMAD 158 (273)
T ss_dssp HHHHHHHHHHHHSCSC--EEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHH
T ss_pred hhchhHHhhhccceEE--EehHHhhHHHHHHHHHcCCeEEeccccccchhHHHHHHHhhcccccccccccccccccccch
Confidence 56666666655 3444 48888999999999999999888 3 44444555541 111 10
Q ss_pred CHHHHHHHHHHHHHcCCe---eeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy14485 191 DYENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 191 ~~~~~~~~i~~~~~~G~~---i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
......+.++.+.++|+. +..+-=+|+|-|.++-.+.++.+..+.
T Consensus 159 ~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~ 206 (273)
T d1tx2a_ 159 MIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLN 206 (273)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGG
T ss_pred hhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHHHHHhhhcccc
Confidence 133445677888889983 555544566888888777776665553
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=94.41 E-value=1.2 Score=38.14 Aligned_cols=222 Identities=13% Similarity=0.034 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCC-CCcccHHHHHHHHHHHHh-cCcEEEEecCCCC-----------HHHHHHHH
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKK-IGLETCLTLGMLN-----------ENQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~-~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~-----------~e~l~~Lk 165 (348)
..-..++.++...+.|++++++.+-... ........+.++++.+.+ ..+++++-.|..+ .|.++.|-
T Consensus 46 ~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll 125 (323)
T d1jvna1 46 NLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 125 (323)
T ss_dssp -CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence 3456677888888999999987643111 011122356788888765 5888888777555 57789999
Q ss_pred HhCCCeeeccCCC--CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-------------------------
Q psy14485 166 KVGLDYYNHNLDT--SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGL------------------------- 217 (348)
Q Consensus 166 ~aG~~~i~~g~et--~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl------------------------- 217 (348)
++|+++|.+|=.. .|+.+..+... .++..+.+..+..-..-+-++.++.-+.
T Consensus 126 ~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYC 205 (323)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEE
T ss_pred HcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccCCCccce
Confidence 9999999987554 36777665543 3444444444433222244445443221
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccc
Q psy14485 218 ----------SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 287 (348)
Q Consensus 218 ----------get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~ 287 (348)
..|.-++.+.+..+.+++ +..+-+.. +-..||.- .++.+ ++...+...+ ..+-+++|-
T Consensus 206 ~y~v~~~gg~~~t~~~l~~~i~~~~~~G--~GEIlltd-IdrDGt~~----G~D~e----l~~~i~~~~~-iPiIasGGi 273 (323)
T d1jvna1 206 WYQCTIKGGRESRDLGVWELTRACEALG--AGEILLNC-IDKDGSNS----GYDLE----LIEHVKDAVK-IPVIASSGA 273 (323)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECC-GGGTTTCS----CCCHH----HHHHHHHHCS-SCEEECSCC
T ss_pred eEEEEEcCCeEecCchHHHHhhhhhccC--cceeEEEe-eccccccc----ccchh----HHHHHHHhCC-CCEEEECCC
Confidence 122235777888888888 77776554 33567642 23333 3333333333 224456654
Q ss_pred cccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCc
Q psy14485 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 288 ~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
-++ .+.....-..|++++..|.- +....-+..+..+.+++.|+.+
T Consensus 274 ~s~-~di~~ll~~~~v~gv~~gs~-~~~~~~si~elK~~L~~~~i~v 318 (323)
T d1jvna1 274 GVP-EHFEEAFLKTRADACLGAGM-FHRGEFTVNDVKEYLLEHGLKV 318 (323)
T ss_dssp CSH-HHHHHHHHHSCCSEEEESHH-HHTTSCCHHHHHHHHHHTTCCC
T ss_pred CCH-HHHHHHHHhCCCeEEEEhhH-HHcCCCCHHHHHHHHHHCCCcc
Confidence 333 23333223467999876652 2344445678888999988875
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.13 E-value=0.35 Score=39.27 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=106.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHH-HHHHHHHhCCCee
Q psy14485 98 LSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNEN-QAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e-~l~~Lk~aG~~~i 172 (348)
.+.-.+.++++.+.+.|+..+++ .+|-..|. ..+ =.+.++.+++. ++.+.++....+++ .++.+.++|.+.+
T Consensus 12 ~d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn-~t~--g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i 88 (221)
T d1tqxa_ 12 SNISKLAEETQRMESLGAEWIHLDVMDMHFVPN-LSF--GPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTF 88 (221)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-BCC--CHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECccCcCcCc-ccc--ChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeE
Confidence 34556677777788889998765 44422232 111 12455566552 45555554444443 4566777888777
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy14485 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+-.++ .+..+..+.++.+++.|..++..+ ......+.+... +..-. .+.+-++...| |.
T Consensus 89 ~~~~~~-----------~~~~~~~~~i~~i~~~g~~~Gial--~p~t~~~~~~~~---l~~~~--~d~vlim~V~p--G~ 148 (221)
T d1tqxa_ 89 HFEALN-----------EDTERCIQLAKEIRDNNLWCGISI--KPKTDVQKLVPI---LDTNL--INTVLVMTVEP--GF 148 (221)
T ss_dssp EGGGGT-----------TCHHHHHHHHHHHHTTTCEEEEEE--CTTSCGGGGHHH---HTTTC--CSEEEEESSCT--TC
T ss_pred Eeehhc-----------cccchhhHHHHHHHhcCCeEEEee--ccccccccchhh---ccccc--ccEEEEEeecc--cc
Confidence 643322 245567788899999998775543 233343433332 22122 56776666554 42
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy14485 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. .++. . +..++-+..+|...|+..|.+-+|- ..+.......+|||.++.|..+.
T Consensus 149 ~--GQ~f-~-~~~l~KI~~lr~~~~~~~I~VDGGI---n~~~i~~l~~aGad~iV~GS~if 202 (221)
T d1tqxa_ 149 G--GQSF-M-HDMMGKVSFLRKKYKNLNIQVDGGL---NIETTEISASHGANIIVAGTSIF 202 (221)
T ss_dssp S--SCCC-C-GGGHHHHHHHHHHCTTCEEEEESSC---CHHHHHHHHHHTCCEEEESHHHH
T ss_pred c--cccc-C-cchhHHHHHHHHhcCCcceEEEccc---CHHhHHHHHHcCCCEEEEChHHH
Confidence 2 2211 1 1344555667888888777776642 23445567889999999887554
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=94.09 E-value=1.3 Score=36.47 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=119.8
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.++.+.+.|++++++..-. ..........++++.+.+ .++++.+-.|.-+.+.++.+.++|++++.+|-.+
T Consensus 33 ~~~a~~~~~~g~dei~ivDld--~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~---- 106 (253)
T d1thfd_ 33 VELGKFYSEIGIDELVFLDIT--ASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAA---- 106 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESS--CSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH----
T ss_pred HHHHHHHHHcCCCEEEEEeec--ccccCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHH----
Confidence 445666778899999987752 222334556778887776 5788888899999999999999999999986533
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEe--------Eeeec-CC--CHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGINICCG--------GIIGL-SE--SRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~--------~i~Gl-ge--t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
++ +++...+..+..-..-+-++.+ .++.. +. +.-+..+.+..+.+++ +..+-+.- +-..|
T Consensus 107 ~~------n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td-I~~dG 177 (253)
T d1thfd_ 107 VE------NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTS-IDRDG 177 (253)
T ss_dssp HH------CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEE-TTTTT
T ss_pred hh------ChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhcc--CCEEEEEE-ecccC
Confidence 21 1222223333322211222222 23333 22 2234566677777787 66665444 33466
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcC
Q psy14485 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 331 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G 331 (348)
|-- .++.+ .++ ..+.. .+..+-+++|-.++ .+... .+..|++.++.|.- +....-+.++..+.+++.|
T Consensus 178 t~~----G~d~~-ll~---~i~~~-~~~pvi~~GGv~s~-~di~~-l~~~g~~gvivgsa-l~~~~~~~~~~k~~l~~~~ 245 (253)
T d1thfd_ 178 TKS----GYDTE-MIR---FVRPL-TTLPIIASGGAGKM-EHFLE-AFLAGADAALAASV-FHFREIDVRELKEYLKKHG 245 (253)
T ss_dssp SCS----CCCHH-HHH---HHGGG-CCSCEEEESCCCSH-HHHHH-HHHTTCSEEEESHH-HHTTCSCHHHHHHHHHHTT
T ss_pred ccC----Ccccc-ccc---ccccc-ccceEEEecCCCCH-HHHHH-HHHCCCCEEEEchH-HHcCCCCHHHHHHHHHHCC
Confidence 642 23333 222 22222 33334455554333 23333 46789999977653 2444445788899999998
Q ss_pred CCc
Q psy14485 332 INT 334 (348)
Q Consensus 332 ~~p 334 (348)
+.+
T Consensus 246 i~v 248 (253)
T d1thfd_ 246 VNV 248 (253)
T ss_dssp CCC
T ss_pred CcE
Confidence 854
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=1.8 Score=36.21 Aligned_cols=135 Identities=16% Similarity=0.220 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.++++.++.++.+.+.|+.-|=++|-.+.|.. ...+++..+++.+++. ..+.+|..+...+.++..-++|++-
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~-~~~~iSIDT~~~eVa~~al~~Ga~i 113 (282)
T d1ajza_ 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQR-FEVWISVDTSKPEVIRESAKVGAHI 113 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhc-ccceEEEEecChHHHHHHHhcCceE
Confidence 57899999999999999999988875443321 2356777888888653 2234578888899999988999887
Q ss_pred eec--cCCCCHHHHhc----------cC-CC--C---------C-----HHHHHHHHHHHHHcCC---eeeEeEeeecCC
Q psy14485 172 YNH--NLDTSPKLYGD----------II-ST--R---------D-----YENRLNTLKNVRNVGI---NICCGGIIGLSE 219 (348)
Q Consensus 172 i~~--g~et~~e~l~~----------i~-~~--~---------~-----~~~~~~~i~~~~~~G~---~i~~~~i~Glge 219 (348)
|+= |.. +++.++. ++ ++ . + .+...+.++.+.++|+ ++..+-=+|+|-
T Consensus 114 INDvsg~~-~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK 192 (282)
T d1ajza_ 114 INDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGK 192 (282)
T ss_dssp ECCTTTTC-STTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred Eechhhcc-cchhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcCC
Confidence 772 221 3444431 11 00 0 1 3455667788889998 467776677888
Q ss_pred CHHHHHHHHHHHHhc
Q psy14485 220 SRDQRAELIFQLANL 234 (348)
Q Consensus 220 t~e~~~~~l~~l~~l 234 (348)
|.++-.+.+..+..+
T Consensus 193 ~~~~n~~ll~~l~~~ 207 (282)
T d1ajza_ 193 NLSHNYSLLARLAEF 207 (282)
T ss_dssp CHHHHHHHHHTGGGG
T ss_pred ChhhhHHHHhhcchh
Confidence 887766666555544
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.98 E-value=2 Score=35.24 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy14485 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
.++.++.+.+.|++++++..-... ........++++.+.+ ..+++++..|..+.+.++.+.++|++++.++-..
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~--- 108 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAA--PEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA--- 108 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCC--TTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH---
T ss_pred HHHHHHHHHHCCCCEEEEEecccc--ccccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccc---
Confidence 345566777889999988875222 2233445566776665 5788999999999999999999999999876422
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC---eeeEeEeee--------cC-C--CHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 182 LYGDIISTRDYENRLNTLKNVRNVGI---NICCGGIIG--------LS-E--SRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~---~i~~~~i~G--------lg-e--t~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
+. +++...+. +...|- -++.++-.+ .| . +.-+..+.++.+.+++ +..+-+.. +
T Consensus 109 -~~------~~~~~~~~---~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td-I 175 (252)
T d1h5ya_ 109 -VR------NPQLVALL---AREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLTS-I 175 (252)
T ss_dssp -HH------CTHHHHHH---HHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEEE-T
T ss_pred -cC------CcchHHHH---HHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcC--CCEEEEEe-e
Confidence 11 11222222 333443 334443321 11 1 1113455666777777 66665443 4
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHH
Q psy14485 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i 327 (348)
-..||- ..++.+ .++ ..+...+ ..+-+++|-.++ .+... ....|+++++.|.- +....-+.++..+.+
T Consensus 176 ~~dG~~----~G~d~~-~~~---~i~~~~~-~pii~~GGv~~~-~di~~-l~~~g~~gv~~gs~-l~~~~~~~~~lk~~l 243 (252)
T d1h5ya_ 176 DRDGTG----LGYDVE-LIR---RVADSVR-IPVIASGGAGRV-EHFYE-AAAAGADAVLAASL-FHFRVLSIAQVKRYL 243 (252)
T ss_dssp TTTTTC----SCCCHH-HHH---HHHHHCS-SCEEEESCCCSH-HHHHH-HHHTTCSEEEESHH-HHTTSSCHHHHHHHH
T ss_pred cccCcc----CCcCHH-HHH---HHHHhcC-CCEEEecCCCCH-HHHHH-HHHCCCCEEEEhhH-HHcCCCCHHHHHHHH
Confidence 456664 234443 222 2222333 334455554333 23333 45689999876642 234444568889999
Q ss_pred HHcCCCc
Q psy14485 328 KKLGINT 334 (348)
Q Consensus 328 ~~~G~~p 334 (348)
++.|+.+
T Consensus 244 ~~~~i~v 250 (252)
T d1h5ya_ 244 KERGVEV 250 (252)
T ss_dssp HHTTCBC
T ss_pred HHcCCcc
Confidence 9988765
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=92.32 E-value=2.6 Score=35.04 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC----------------CCCC--------cccHHHHHHHHHHHHhcCcEEEEecC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAW----------------RELK--------DRDLDNIENMICEVKKIGLETCLTLG 154 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~----------------~~~~--------~~~~~~~~~l~~~i~~~~~~i~~~~g 154 (348)
+.+...+.++.+.+.|+..|-||.-. .... ..+.+++.++.+..++.++.+.+++
T Consensus 32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~- 110 (280)
T d2zdra2 32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTP- 110 (280)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcccccc-
Confidence 46777777788888899998887420 0000 1234567777777777788886665
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHh
Q psy14485 155 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN 233 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~ 233 (348)
.+.+.+..+.+.|++.+-++--. + .....++.+.+.+.+ +++.. +-+.+++.+.+.++.+
T Consensus 111 -fd~~s~~~~~~~~~~~~KIaS~d---~-----------~n~~Li~~i~k~~kp----iiiStG~s~~~EI~~av~~~~~ 171 (280)
T d2zdra2 111 -FSRAAALRLQRMDIPAYKIGSGE---C-----------NNYPLIKLVASFGKP----IILSTGMNSIESIKKSVEIIRE 171 (280)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGG---T-----------TCHHHHHHHHTTCSC----EEEECTTCCHHHHHHHHHHHHH
T ss_pred -chhhcccccccccccceeccchh---c-----------cccHhhhhhhhccCc----eeecccccchhHhhhhhhhhhh
Confidence 56888999999999987753211 0 112334555556654 35555 6788999999998887
Q ss_pred cCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy14485 234 LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 234 l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
.+ .+.+-++...-+| ||..+. -+..+...+..+|+..|-+|. |..+......|+..||+-+
T Consensus 172 ~~--~~~~llhc~s~YP-t~~~~~-------nL~~i~~lk~~f~~~~iG~Sd--H~~g~~~~~~Ava~GA~~I 232 (280)
T d2zdra2 172 AG--VPYALLHCTNIYP-TPYEDV-------RLGGMNDLSEAFPDAIIGLSD--HTLDNYACLGAVALGGSIL 232 (280)
T ss_dssp HT--CCEEEEECCCCSS-CCGGGC-------CTTHHHHHHHHCTTSEEEEEC--CSSSSHHHHHHHHTTCCEE
T ss_pred cc--ccceEEEeeccCc-cccccc-------cccccceeeccccccceeecC--cccchhhHHHHHHCCCeEE
Confidence 76 4433333332222 333332 234566666677776565553 6666778888999999987
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.32 E-value=0.75 Score=37.52 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=57.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++.+++...++...+.|+..|--++|.. +..........+.+.++..++.+-++.|..+.+....|.++|.+|+-
T Consensus 144 ~L~~~~i~~a~~~a~~aGadFVKTSTG~~-~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIG 219 (234)
T d1n7ka_ 144 LWDDKTLSLLVDSSRRAGADIVKTSTGVY-TKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIG 219 (234)
T ss_dssp GSCHHHHHHHHHHHHHTTCSEEESCCSSS-CCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ccchHHHHHHHHHHHHhhhhheeeccccc-CCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceee
Confidence 46888888888888888998887666632 22334566666666666656778889999999999999999999874
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=91.28 E-value=0.64 Score=37.33 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++.+++.+.++.+.+.|+..|--++|. .+.....+.+.-+.+.+.. .+.+-++.|..+.+.+..|.++|.+|+-
T Consensus 128 ~L~~~ei~~a~~~a~~aGadfiKTSTG~-~~~gat~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~l~aGa~riG 202 (211)
T d1ub3a_ 128 YFSPEEIARLAEAAIRGGADFLKTSTGF-GPRGASLEDVALLVRVAQG-RAQVKAAGGIRDRETALRMLKAGASRLG 202 (211)
T ss_dssp GSCHHHHHHHHHHHHHHTCSEEECCCSS-SSCCCCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHHHHHHhccceEEecCCC-CCCCCCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHHhhhHhc
Confidence 3688999988888888899988777773 3334566676666555553 4667778999999999999999999875
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.85 E-value=4 Score=34.27 Aligned_cols=194 Identities=14% Similarity=0.067 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHHHhc---CcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHH
Q psy14485 130 RDLDNIENMICEVKKI---GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTL 199 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~---~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i 199 (348)
...+++.+.++.++.. ...+..+....+.+ .++.+.++|+|.+.+++.. .....+.... .++.+.+.+.+
T Consensus 84 ~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~ 163 (312)
T d1gtea2 84 KTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 163 (312)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHH
T ss_pred cchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHH
Confidence 4566777777776652 22232333334443 3445567799999988765 3222222211 34667777777
Q ss_pred HHHHHc-CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc-cccccCC-----CCCC--------C----CCC
Q psy14485 200 KNVRNV-GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN-NLVQIKG-----TPLY--------G----SSI 259 (348)
Q Consensus 200 ~~~~~~-G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~-~l~P~~g-----T~l~--------~----~~~ 259 (348)
+.+++. .+++.+-+ +. .++..+ ..+.+.+.+ .+.+.+. .+....+ .+.. . ..+
T Consensus 164 ~~v~~~~~~pv~vKl--~~~~~~~~~---i~~~~~~~g--~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~ 236 (312)
T d1gtea2 164 RWVRQAVQIPFFAKL--TPNVTDIVS---IARAAKEGG--ADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 236 (312)
T ss_dssp HHHHHHCSSCEEEEE--CSCSSCHHH---HHHHHHHHT--CSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG
T ss_pred HHHhhccCCceeecc--cccchhHHH---HHHHHHHhc--ccceEEEeecccccccccccccccccccccccccccccCc
Confidence 777774 34443332 23 344444 445555666 5555432 2222111 1110 0 012
Q ss_pred CCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCC
Q psy14485 260 LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGIN 333 (348)
Q Consensus 260 ~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~ 333 (348)
......++++...|...|+..|-..+|-.+ .+.....+.+||+.+..+.-+ ...|+.. +++.+.+.+.||+
T Consensus 237 ~i~~~al~~v~~~~~~~~~ipIi~~GGI~~--~~d~~~~l~aGA~~Vqv~ta~-~~~G~~~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 237 AIRPIALRAVTTIARALPGFPILATGGIDS--AESGLQFLHSGASVLQVCSAV-QNQDFTVIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp GGHHHHHHHHHHHHHHSTTCCEEEESSCCS--HHHHHHHHHTTCSEEEESHHH-HTSCTTHHHHHHHHHHHHHHHTTCG
T ss_pred CcchhhHHHHHHHHHHcCCCcEEEEcCCCC--HHHHHHHHHcCCCeeEECHhh-hccChHHHHHHHHHHHHHHHHcCCC
Confidence 223455788888888888755555554332 334455788999999665422 2345542 4556777888874
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.35 Score=39.62 Aligned_cols=131 Identities=13% Similarity=0.229 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEec----------cCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy14485 101 ESVITAAQKAKSDGATRFCMGA----------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~g----------g~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
+++++.+... ....++|+- |+ +. ....+.+..+++.+++.++.+++=.. -+.+.++..++.|+|
T Consensus 76 ~e~i~ia~~~---kP~qvtLVPe~r~elTTegGl-d~-~~~~~~L~~~i~~l~~~girvSLFiD-pd~~~i~~a~~lGad 149 (242)
T d1m5wa_ 76 EEMLAIAVET---KPHFCCLVPEKRQEVTTEGGL-DV-AGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVGAP 149 (242)
T ss_dssp HHHHHHHHHH---CCSEEEECCCCSSCSSCCSCC-CS-GGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCS
T ss_pred hhHHHHHHHh---ccceEEEeecCccccCcCCce-ee-hhhHHHHHHHHHHHHhcCCeEEEEec-cchhhHHHHhhcCcc
Confidence 5566655443 457787763 22 21 23568899999999998888875443 578999999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy14485 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
+|.+.-+.-.+.+..-....-.+.+.++.+.+++.|+.++++ -|| -++.. .+.++. ..+.+++..++
T Consensus 150 ~IElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAG--HgLn~~Nl~-------~i~~ip-~i~EvsIGHai 217 (242)
T d1m5wa_ 150 FIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAG--HGLTYHNVK-------AIAAIP-EMHELNIGHAI 217 (242)
T ss_dssp EEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEE--SSCCTTTHH-------HHHTCT-TEEEEEECHHH
T ss_pred eeeeecccccccccchhhHHHHHHHHHHHHHHHhcCCcccCC--CCcCccchH-------HHhcCC-CCeEEeccHHH
Confidence 998744321111110000113456677888899999998876 444 44433 233443 24556655444
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.26 E-value=4.8 Score=32.80 Aligned_cols=130 Identities=18% Similarity=0.111 Sum_probs=91.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--------cCCCCHHHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--------LGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--------~g~l~~e~l~~Lk~aG~ 169 (348)
+++.++.+.++.+.++ ++.+-|++| + ....+.+.+.+-++..++.++.++.- ....-++.++..++.|+
T Consensus 23 lgl~~leD~Le~ag~y-ID~~K~g~G-t-~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg~~~~y~~~~~~lGf 99 (251)
T d1qwga_ 23 LPPKFVEDYLKVCGDY-IDFVKFGWG-T-SAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGF 99 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTT-G-GGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhhhhh-eeEEEecCc-e-eeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 5677777666555443 888889877 2 22446677889999999998888642 11235678999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-------CCCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------SESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-------get~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.+. .-+.+++.+.++.+++.|+.+-+- +|. --+.+++++.++.-.+.+ .+.|-
T Consensus 100 ~~iEiSdg~~---------~i~~~~~~~~I~~~~~~G~~V~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeaG--A~~Vi 166 (251)
T d1qwga_ 100 EAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTE--VGKKMPDKDKQLTIDDRIKLINFDLDAG--ADYVI 166 (251)
T ss_dssp CEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEE--ECCSSHHHHTTCCHHHHHHHHHHHHHHT--CSEEE
T ss_pred CEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCEEeec--ccCCCCCCccccCHHHHHHHHHHHHHCC--CceeE
Confidence 9998765441 246788999999999999976543 232 135678888888777777 55554
Q ss_pred c
Q psy14485 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 167 i 167 (251)
T d1qwga_ 167 I 167 (251)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.042 Score=28.43 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=9.4
Q ss_pred CCCCCcCCCCC
Q psy14485 76 TEDCGYCPQST 86 (348)
Q Consensus 76 ~~~C~fC~~~~ 86 (348)
|++|.||+|..
T Consensus 2 PFkC~~CsFDt 12 (29)
T d1x5wa2 2 PFKCNYCSFDT 12 (29)
T ss_dssp SEECSSSSCEE
T ss_pred Ccccceecccc
Confidence 67899999875
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=88.87 E-value=1.3 Score=35.80 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++.+++...++.+.+.|+..|--++|. .+...+++.+.-+.+.++. .+.+-++.|..+.+.+..|.++|.+|+-
T Consensus 128 ~L~~~ei~~a~~~a~~aGadfiKTSTG~-~~~gat~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~i~~Ga~RiG 202 (225)
T d1mzha_ 128 YLNEEEIKKAVEICIEAGADFIKTSTGF-APRGTTLEEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIG 202 (225)
T ss_dssp GCCHHHHHHHHHHHHHHTCSEEECCCSC-SSSCCCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHHHHHHcccceEeecCCC-CCCCCCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHhchhhee
Confidence 3678899888888888999988777773 3334456665554444433 4677788999999999999999999875
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=87.68 E-value=0.99 Score=37.00 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cC--CCCHHHHHHHHHhCCCeee
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LG--MLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g--~l~~e~l~~Lk~aG~~~i~ 173 (348)
..+.+.+.++.+++.|++.|.|+.-. .....+.+.+.+++...+ +++++.+ .. .-..+.++.|.+.|++||.
T Consensus 70 E~~~M~~di~~~k~~G~dGvV~G~L~-~dg~iD~~~~~~L~~~a~--~l~vTFHRAfD~~~d~~~al~~Li~lG~~rIL 145 (247)
T d1twda_ 70 EFAAILEDVRTVRELGFPGLVTGVLD-VDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVL 145 (247)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC-TTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEC-CCCCccHHHHHHHHHHhc--ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEe
Confidence 45777788888999999999997542 223568888888888776 4666654 22 1234778999999999986
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=87.26 E-value=0.43 Score=40.98 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEeeec-CCC
Q psy14485 191 DYENRLNTLKNVRNVGINICCGGIIGL-SES 220 (348)
Q Consensus 191 ~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get 220 (348)
+.++..+.++.||+.||.|..++++++ +..
T Consensus 79 t~~efk~lV~~~H~~GI~VilDvV~NHt~~~ 109 (390)
T d1ud2a2 79 TKAQLERAIGSLKSNDINVYGDVVMNHKMGA 109 (390)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEECCC
T ss_pred CHHHHHHHHHHHHhcCCceEEEEccccccCc
Confidence 789999999999999999999999998 643
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=87.06 E-value=3.5 Score=33.88 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHH--hCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKK--VGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~--aG~~~i~ 173 (348)
..+++.+++.+++..+.|+.-|=++.| . +.....+.+..++..+++. +++ ++..+...+.++.-.+ +|.+-++
T Consensus 21 ~~d~~~~~~~A~~m~~~GAdiIDIg~g-~-~~~~e~e~~~~vi~~l~~~~~vp--iSIDT~~~~v~~aal~~~~Ga~iIN 96 (262)
T d1f6ya_ 21 ERDPAPVQEWARRQEEGGARALDLNVG-P-AVQDKVSAMEWLVEVTQEVSNLT--LCLDSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp HTCHHHHHHHHHHHHHHTCSEEEEBCC------CHHHHHHHHHHHHHTTCCSE--EEEECSCHHHHHHHHHHCSSCEEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeCCC-C-CCCCHHHHHHHHHHHHHHhhcCC--ccccCCccHHHHHHHHhhcccceee
Confidence 468999999999999999999888644 2 2223445666777777663 444 4677788888876555 5876665
Q ss_pred -ccCCC-CHH-HHh----------ccC--C---CCCHHHH----HHHHHHHHHcCC---eeeEeEeeec----CCCHHHH
Q psy14485 174 -HNLDT-SPK-LYG----------DII--S---TRDYENR----LNTLKNVRNVGI---NICCGGIIGL----SESRDQR 224 (348)
Q Consensus 174 -~g~et-~~e-~l~----------~i~--~---~~~~~~~----~~~i~~~~~~G~---~i~~~~i~Gl----get~e~~ 224 (348)
++.+. .+. ... .+. + ..+.+++ .+.++.+.++|+ .+..+-.+|. +++..+.
T Consensus 97 dIsg~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~DPgi~~~~~~~~~~~~~ 176 (262)
T d1f6ya_ 97 STNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEV 176 (262)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHH
T ss_pred chhcccchHHHHHHHHhcCCceEEEEecCCcccccCHHHHHHHHHHHHHHHHHcCCCHHHhhccceeeeccccchHHHHH
Confidence 22222 211 221 011 1 1244443 344566777898 4666766643 4556666
Q ss_pred HHHHHHHHhcC
Q psy14485 225 AELIFQLANLN 235 (348)
Q Consensus 225 ~~~l~~l~~l~ 235 (348)
.+.++.++++.
T Consensus 177 le~l~~l~~~~ 187 (262)
T d1f6ya_ 177 LKTLQQIKMLA 187 (262)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=86.35 E-value=2.4 Score=34.75 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++.+++...++.+.+.|+..|--++|. .+.....+.+.-+.+.+ ...+.+-++.|.-+.+.+..|.++|.+|+-
T Consensus 161 ~L~~~e~~~a~~ia~~aGadfvKTSTGf-~~~gat~e~V~~m~~~~-~~~~giKasGGIrt~~~a~~~i~aGa~riG 235 (251)
T d1o0ya_ 161 YLDTEEKIAACVISKLAGAHFVKTSTGF-GTGGATAEDVHLMKWIV-GDEMGVKASGGIRTFEDAVKMIMYGADRIG 235 (251)
T ss_dssp GCCHHHHHHHHHHHHHTTCSEEECCCSS-SSCCCCHHHHHHHHHHH-CTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ccCcHHHHHHHHHHHHhCcceeeccCCC-CCCCcCHHHHHHHHHHh-CCCceEeccCCcCCHHHHHHHHHHhhHHhC
Confidence 4778888887777788888887776663 23334555554333333 334667778889999999999999999874
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=86.30 E-value=1.6 Score=35.72 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=116.8
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy14485 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.++.+.+.|++++++..-... ........++++.+.+ ..+++++-.|..+.+.++.+.++|++++.++-.+
T Consensus 33 ~~~a~~~~~~g~dei~iiDl~~~--~~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~---- 106 (251)
T d1ka9f_ 33 VEAARAYDEAGADELVFLDISAT--HEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA---- 106 (251)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSS--TTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH----
T ss_pred HHHHHHHHHcCCCEEEEEecccc--cccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchh----
Confidence 44455667789999988875222 2233456677777776 4788888999999999999999999999876422
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCe-e--eEe--------Eeeec-CC--CHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy14485 183 YGDIISTRDYENRLNTLKNVRNVGIN-I--CCG--------GIIGL-SE--SRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~-i--~~~--------~i~Gl-ge--t~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++ +++...+ .++..|-+ + +.+ .++.. +. +.-+..+.+..+.+++ +..+-+... -
T Consensus 107 ~~------n~~~i~~---~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~tdi-~ 174 (251)
T d1ka9f_ 107 VR------RPELIRE---LADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSM-D 174 (251)
T ss_dssp HH------CTHHHHH---HHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEET-T
T ss_pred hh------CHHHHHH---HHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcC--CCEEEEEee-c
Confidence 11 1122222 23334532 1 111 12222 21 2224556667777787 667655543 3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHH
Q psy14485 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~ 328 (348)
..||- ..++. +.+ .......+ ..+-+++|-.++. +. ..++..|+++++.|. .+....-+..+..+.+.
T Consensus 175 ~dG~~----~G~d~-~l~---~~i~~~~~-~pii~~GGv~~~~-dl-~~l~~~g~~gviig~-al~~g~~~~~~~k~~l~ 242 (251)
T d1ka9f_ 175 RDGTK----EGYDL-RLT---RMVAEAVG-VPVIASGGAGRME-HF-LEAFQAGAEAALAAS-VFHFGEIPIPKLKRYLA 242 (251)
T ss_dssp TTTTC----SCCCH-HHH---HHHHHHCS-SCEEEESCCCSHH-HH-HHHHHTTCSEEEESH-HHHTTSSCHHHHHHHHH
T ss_pred ccCcc----CCcch-hHH---HHHHhhcc-eeEEEecCCCCHH-HH-HHHHHCCCCEEEEhH-HHHcCCCCHHHHHHHHH
Confidence 45653 23443 222 23333333 3344555543332 22 335678999987765 33444445678888888
Q ss_pred HcCCCc
Q psy14485 329 KLGINT 334 (348)
Q Consensus 329 ~~G~~p 334 (348)
+.|..+
T Consensus 243 ~~~i~v 248 (251)
T d1ka9f_ 243 EKGVHV 248 (251)
T ss_dssp HTTCCB
T ss_pred HCCCcc
Confidence 888754
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=85.60 E-value=1 Score=36.89 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEE--ecCCCCH-----HHHHHHHHhCC
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCL--TLGMLNE-----NQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~g~l~~-----e~l~~Lk~aG~ 169 (348)
-+.++..+.++.+.+.|+++|+.+=- .+.......+.+.++++..++.++.+.+ ++..+.. +.+..+++.|+
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi 93 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGA 93 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHCCC
Confidence 35788888999999999998754211 1122223356788888888988888775 5655544 56789999999
Q ss_pred CeeeccC
Q psy14485 170 DYYNHNL 176 (348)
Q Consensus 170 ~~i~~g~ 176 (348)
+.+-+..
T Consensus 94 ~glRlD~ 100 (244)
T d1x7fa2 94 DGIRLDV 100 (244)
T ss_dssp SEEEESS
T ss_pred CEEEEcC
Confidence 9887643
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=84.98 E-value=3.9 Score=32.55 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=77.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..++++.+..++.+.+.|++.+-++-- +| .-.+.++.+++...++.+-.| .++.+.++...++|.+.+- .
T Consensus 25 ~~~~~~a~~~~~al~~~Gi~~iEitl~--~p------~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv-s 95 (216)
T d1mxsa_ 25 IAREEDILPLADALAAGGIRTLEVTLR--SQ------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVV-T 95 (216)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEESS--ST------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEE-C
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCC--Ch------hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEE-C
Confidence 356889999999999999999866432 22 335677777764334555555 6789999999999997543 2
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.-.++ +.++.+++.|+.+..+.+ |+.|+.. +.+++ .+.+.++|-
T Consensus 96 P~~~~----------------~v~~~a~~~~i~~iPGv~-----TpsEi~~----A~~~G--~~~vKlFPA 139 (216)
T d1mxsa_ 96 PGITE----------------DILEAGVDSEIPLLPGIS-----TPSEIMM----GYALG--YRRFKLFPA 139 (216)
T ss_dssp SSCCH----------------HHHHHHHHCSSCEECEEC-----SHHHHHH----HHTTT--CCEEEETTH
T ss_pred CCCcH----------------HHHHHHHhcCCCccCCcC-----CHHHHHH----HHHCC--CCEEEeccc
Confidence 22222 336678889998766644 7776644 44666 667766654
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.29 E-value=9.6 Score=31.26 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=107.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCH-HHHHHHHHhCCCeeecc
Q psy14485 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNE-NQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~-e~l~~Lk~aG~~~i~~g 175 (348)
++.++.++.++.+.+.|++.|=++.. ..++.+.+.+....+..... ............. .........|.....+.
T Consensus 30 ~~~~~k~~i~~~L~~aGv~~IEvG~p--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (310)
T d1sr9a2 30 MSPARKRRMFDLLVRMGYKEIEVGFP--SASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVH 107 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECT--TTCHHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC--cCCHHHHHHHHHHHHhccccccceeeeeeeechhhhHHHHHhhcCcceeeEE
Confidence 78999999999999999999877432 11222222222222211111 2333322212221 22223333454444333
Q ss_pred CCC--CHHHHhccCCCCCHHHHHHH--------HHHHHH-cCCee--eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeee
Q psy14485 176 LDT--SPKLYGDIISTRDYENRLNT--------LKNVRN-VGINI--CCGGIIGLSESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 176 ~et--~~e~l~~i~~~~~~~~~~~~--------i~~~~~-~G~~i--~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
... ...... .....+..+.... ...+.+ .+..+ ..+.........+.....+..+.+... .....
T Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g 185 (310)
T d1sr9a2 108 FYNSTSILQRR-VVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIA-PTPER 185 (310)
T ss_dssp EEEECCHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHC-CBTTB
T ss_pred eecchhHHHHH-HHhhccHHhhhhhhhhhhhHHHHHHHHhhcceeEEEEecccCCCCcHHHHHHHHHHHHHHhh-hhhcC
Confidence 222 333333 2223333322221 222222 22322 222222224455555555554444321 11112
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---ee--CCeec
Q psy14485 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLL 313 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~ 313 (348)
+..+. .++| ....++.+..+++...+..+|+. .+.+...-|+ +.......|+.+||+.+ +. |+
T Consensus 186 ~~~i~-l~Dt----~G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG~--- 257 (310)
T d1sr9a2 186 PIIFN-LPAT----VEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE--- 257 (310)
T ss_dssp CEEEE-EEES----SCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---
T ss_pred ceEEe-eccc----ccccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHHHHHhccCCEEecCCccccc---
Confidence 22221 2223 24567889999999999999873 3443322232 22344566899999998 11 21
Q ss_pred cCCCCCchHHHHHHHHcCCCc
Q psy14485 314 TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 ~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+...+++..++++.|+.+
T Consensus 258 ~aGN~~tE~lv~~l~~~g~~~ 278 (310)
T d1sr9a2 258 RTGNVCLVTLGLNLFSRGVDP 278 (310)
T ss_dssp TTCBCBHHHHHHHHHTTTCCC
T ss_pred ccCChhHHHHHHHHHhcCCCC
Confidence 123334577899999999864
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=83.54 E-value=2.8 Score=36.68 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHhCCCeeeccCCC-
Q psy14485 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~-g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
++-.+.+..+.+.|++-+++... +. ..+.+.++++.+++....+.+-. +..+.+....|.++|+|.|-+|+..
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID~A--hG---~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpG 224 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVIDSA--HG---HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 224 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCS--CC---SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCS
T ss_pred HHHHHHHHHHHhhccceeeeecc--cc---chHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeeccccc
Confidence 34456677788899999998765 22 22577889999987533333233 3689999999999999999988775
Q ss_pred C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy14485 179 S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 179 ~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
+ -+...-++.+ .+..+.++.+.++..+.+|.++ |=--+.-|+...|-
T Consensus 225 s~CtTr~~~GvG~p-q~sai~~~~~~~~~~~vpiIAD---GGi~~~Gdi~KAla 274 (388)
T d1eepa_ 225 SICTTRIVAGVGVP-QITAICDVYEACNNTNICIIAD---GGIRFSGDVVKAIA 274 (388)
T ss_dssp TTSHHHHHHCCCCC-HHHHHHHHHHHHTTSSCEEEEE---SCCCSHHHHHHHHH
T ss_pred cccccccccccCcc-hHHHHHHHHHHhccCCceEEec---cccCcCCceeeeEE
Confidence 3 2222233322 3556677777777777776554 11246677777764
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=82.73 E-value=1 Score=38.44 Aligned_cols=34 Identities=3% Similarity=-0.015 Sum_probs=29.1
Q ss_pred cCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy14485 186 IIST-RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 186 i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
+.+. .+.++..+.++.||+.||.|-.++++.+ +.
T Consensus 85 vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~ 120 (357)
T d1gcya2 85 KNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR 120 (357)
T ss_dssp SCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred cCccCCCHHHHHHHHHHHHhcCCeEEEEEeccccCC
Confidence 4443 3889999999999999999999999998 54
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=82.18 E-value=7 Score=32.77 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=50.5
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHH-HHHhCC
Q psy14485 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYR-LKKVGL 169 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~-Lk~aG~ 169 (348)
..+.+.|+++|-|-|+ .-|...+.....++++..+..++.+....|. .+++.+.. .++.|+
T Consensus 89 ~~ai~~GftSVMiDgS-~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~Tgv 167 (305)
T d1rvga_ 89 LRALRAGFTSVMIDKS-HEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGA 167 (305)
T ss_dssp HHHHHTTCSEEEECCT-TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCC
T ss_pred HHHHhcCCceEEEcCc-cccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCc
Confidence 3455689999988776 2233345556666777777778777764332 23456555 556799
Q ss_pred CeeeccCCCCHHHHh
Q psy14485 170 DYYNHNLDTSPKLYG 184 (348)
Q Consensus 170 ~~i~~g~et~~e~l~ 184 (348)
|.+-+++.+.--.|+
T Consensus 168 D~LAvaiGn~HG~Yk 182 (305)
T d1rvga_ 168 DYLAVAIGTSHGAYK 182 (305)
T ss_dssp SEEEECSSCCSSSBC
T ss_pred cHhhhhhhhhhcccC
Confidence 999999988645554
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=82.04 E-value=3 Score=35.60 Aligned_cols=124 Identities=13% Similarity=0.047 Sum_probs=76.8
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CH-
Q psy14485 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SP- 180 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~- 180 (348)
+.++.+.+.|++-+++..+. . ....+.+.++.+++. ++.+. -....+.+..+.|.++|+|.+-+|+.. +-
T Consensus 101 e~~~~li~agvd~ivId~A~--G---~~~~~~~~ik~ik~~~~~~~vi-aGnV~t~~~a~~l~~~GaD~v~VGig~Gs~c 174 (330)
T d1vrda1 101 ERVEKLVKAGVDVIVIDTAH--G---HSRRVIETLEMIKADYPDLPVV-AGNVATPEGTEALIKAGADAVKVGVGPGSIC 174 (330)
T ss_dssp HHHHHHHHTTCSEEEECCSC--C---SSHHHHHHHHHHHHHCTTSCEE-EEEECSHHHHHHHHHTTCSEEEECSSCSTTC
T ss_pred HHHHHHHHCCCCEEEEecCC--C---CchhHHHHHHHHHHhCCCCCEE-eechhHHHHHHHHHHcCCCEEeeccccCccc
Confidence 34556677899988886552 1 125677888888764 33332 223578899999999999999998876 42
Q ss_pred HHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 181 KLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 181 e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
-.....+-+. ......++-+.++..++++.++ |=-.+..++...| .++ .+.+-+
T Consensus 175 tt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAd---GGi~~~gdiakAl----a~G--Ad~Vm~ 229 (330)
T d1vrda1 175 TTRVVAGVGVPQLTAVMECSEVARKYDVPIIAD---GGIRYSGDIVKAL----AAG--AESVMV 229 (330)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEE---SCCCSHHHHHHHH----HTT--CSEEEE
T ss_pred cccceeccccccchhHHHHHHHHHhcCceEEec---CCcccCCchheee----ecc--Cceeee
Confidence 2222222221 4456677777778888876544 1123556666655 354 555544
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.89 E-value=1.5 Score=33.66 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy14485 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
.++.+.|++.|.|.-. +++.+.+.++.++.. .+.+.++ |.++.+.+..+...|+|.++.|.=|
T Consensus 93 ~~a~~~~~diImLDN~-------sp~~~k~~v~~~~~~~~~i~lEaS-GgI~~~ni~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 93 DAVLPEKPELILLDNF-------AVWQTQTAVQRRDSRAPTVMLESS-GGLSLQTAATYAETGVDYLAVGALT 157 (169)
T ss_dssp HHHGGGCCSEEEEETC-------CHHHHHHHHHHHHHHCTTCEEEEE-SSCCTTTHHHHHHTTCSEEECGGGT
T ss_pred hhhhhcCCcEEEecCc-------ChHhHHHHHHHhhccCCeeEEEEe-CCCCHHHHHHHHHcCCCEEECCccc
Confidence 3455678888877422 346777888777764 3445544 5578899999999999999987543
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=81.31 E-value=0.84 Score=38.56 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy14485 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
.+.++..+.++.+|+.|+.|..++++.+ +.
T Consensus 66 G~~~~f~~lv~~~H~~gi~VilD~V~NH~~~ 96 (347)
T d1ht6a2 66 GNAAELKSLIGALHGKGVQAIADIVINHRCA 96 (347)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred CCHHHHHHHHHHHhhcceEEeeeccccccCC
Confidence 4889999999999999999999999988 54
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.08 E-value=1.2 Score=38.77 Aligned_cols=29 Identities=7% Similarity=0.211 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy14485 191 DYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 191 ~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
+.++..+.++.||+.||+|..++++.+ +.
T Consensus 80 t~~df~~LV~~aH~~GIkVIlDvV~NHt~~ 109 (393)
T d1hvxa2 80 TKAQYLQAIQAAHAAGMQVYADVVFDHKGG 109 (393)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 789999999999999999999999987 53
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=81.07 E-value=2.6 Score=32.20 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy14485 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+.+|+. ++.+.|+..|.+.- .+++.+.+.++.++. .+.+.++ |.++.+.+..+.+.|+|.|++|-
T Consensus 88 ~~~~~~----~a~~~g~diImLDN-------~~pe~~~~av~~i~~-~~~lEaS-GgI~~~ni~~ya~~GVD~IS~ga 152 (167)
T d1qapa1 88 NLDELD----DALKAGADIIMLDN-------FNTDQMREAVKRVNG-QARLEVS-GNVTAETLREFAETGVDFISVGA 152 (167)
T ss_dssp SHHHHH----HHHHTTCSEEEESS-------CCHHHHHHHHHTTCT-TCCEEEC-CCSCHHHHHHHHHTTCSEEECSH
T ss_pred cHHHHH----HHHhcCCcEEEecC-------CCHHHHHHHHHhcCC-ceEEEEe-CCCCHHHHHHHHHcCCCEEECCc
Confidence 445544 34567888887732 244777777766654 3455554 78999999999999999999764
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=80.72 E-value=1.2 Score=38.03 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCeeeccCCC-C--HH----HHh----ccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy14485 159 NQAYRLKKVGLDYYNHNLDT-S--PK----LYG----DIIST-RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et-~--~e----~l~----~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
+..+.|++.|++.|.+..-+ + .. .|. ++.+. .+.++..+.++.||+.||.|-.++++.+ +.
T Consensus 19 ~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~~ 92 (354)
T d1g94a2 19 ECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMAA 92 (354)
T ss_dssp HHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEECS
T ss_pred HHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeecccccc
Confidence 33455888888888885322 2 11 232 24333 3899999999999999999999999988 54
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=80.49 E-value=11 Score=31.18 Aligned_cols=123 Identities=12% Similarity=0.183 Sum_probs=70.9
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC-----------------CHHH-HHHHHHhC
Q psy14485 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML-----------------NENQ-AYRLKKVG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l-----------------~~e~-l~~Lk~aG 168 (348)
++.+.+.|+++|-|-|. ..|...+.....++++..+..++.+....|.+ +++. .+..++-|
T Consensus 89 i~~ai~~GftSVMiD~S-~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~Tg 167 (284)
T d1gvfa_ 89 IRRKVHAGVRSAMIDGS-HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTG 167 (284)
T ss_dssp HHHHHHTTCCEEEECCT-TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCeEEEECC-CCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhC
Confidence 44556789999988776 33333455566667777777777776643322 3344 44556779
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeec
Q psy14485 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+|.+-+++.|.--.|+. .+.-+++. ++.++. ..++++ ++-|- |-..+++.+. .+.+ +..+.+
T Consensus 168 vD~LAvaiGt~HG~y~~-~p~l~~~~-L~~i~~--~~~vPL---VlHGgSG~~~e~i~~a----i~~G--i~KiNi 230 (284)
T d1gvfa_ 168 VDSLAVAIGTAHGLYSK-TPKIDFQR-LAEIRE--VVDVPL---VLHGASDVPDEFVRRT----IELG--VTKVNV 230 (284)
T ss_dssp CSEEEECSSCCSSCCSS-CCCCCHHH-HHHHHH--HCCSCE---EECCCTTCCHHHHHHH----HHTT--EEEEEE
T ss_pred CCEEeeecCceeeccCC-CCccccch-hhhhhc--cccCCe---EeeCCCCCCHHHHHHH----HHcC--eEEEEe
Confidence 99999999885445542 23345543 232322 245554 34455 6666665444 3455 444444
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=80.48 E-value=2.9 Score=34.55 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEe
Q psy14485 100 IESVITAAQKAKSDGATRFCMG 121 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~ 121 (348)
++.+.+.++.+.+.|++.|+|.
T Consensus 147 ~~~~~~~~~~~~~~g~~~I~l~ 168 (289)
T d1nvma2 147 AEKLAEQGKLMESYGATCIYMA 168 (289)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE
T ss_pred chhhhHHHHhhccccceeeeec
Confidence 3334444444444444444443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=80.12 E-value=5.2 Score=31.67 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=97.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy14485 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..+.+++...++.+.+.|++.|-++-- ++ .-.+.++.+++....+.+-.| .++.+.++...++|.+-+- +
T Consensus 22 ~~~~~~~~~~~~al~~~Gi~~iEitl~--~~------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv-S 92 (212)
T d1vhca_ 22 LDNADDILPLADTLAKNGLSVAEITFR--SE------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVV-T 92 (212)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETT--ST------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEE-C
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCC--Ch------hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEE-C
Confidence 356788899999999999999877532 22 234666777654334555555 6789999999999998543 2
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy14485 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
...++ +.++.+++.++.+-.+.+ |+.|+... .+++ .+.+.++|-- .+
T Consensus 93 P~~~~----------------~v~~~a~~~~i~~iPGv~-----TpsEi~~A----~~~G--~~~vK~FPA~-----~~- 139 (212)
T d1vhca_ 93 PGLNP----------------KIVKLCQDLNFPITPGVN-----NPMAIEIA----LEMG--ISAVKFFPAE-----AS- 139 (212)
T ss_dssp SSCCH----------------HHHHHHHHTTCCEECEEC-----SHHHHHHH----HHTT--CCEEEETTTT-----TT-
T ss_pred CCCCH----------------HHHHHHHhcCCCccCCcC-----CHHHHHHH----HHCC--CCEEEEcccc-----cc-
Confidence 22222 346778889988766654 67766544 4566 6666655432 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy14485 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
... +.+...+-.+|+..+-.++|- +. .+ -..-|.+|+.....|..+
T Consensus 140 -----gG~---~~lkal~~p~p~~~~~ptGGV-~~-~N-~~~yl~~g~v~~~~Gs~l 185 (212)
T d1vhca_ 140 -----GGV---KMIKALLGPYAQLQIMPTGGI-GL-HN-IRDYLAIPNIVACGGSWF 185 (212)
T ss_dssp -----THH---HHHHHHHTTTTTCEEEEBSSC-CT-TT-HHHHHTSTTBCCEEECGG
T ss_pred -----chH---HHHHHHhccccCCeEEecCCC-CH-HH-HHHHHhCCCEEEEEChhh
Confidence 111 233444446777544334432 22 12 223467777666555433
|