Psyllid ID: psy14743


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80------
MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPGPMQKLSLT
ccccccHHHHcccHHHHHHHHHccccEEEccccEEEEccccccEEEEEEccEEEEEcccccccccccccccccccccccccccccc
ccHcccHHHHHccHHHHHHHHHHccccEcccccEEEEEcccccEEEEEEccEEEEccccEEccccccccccccccccccccEEEcc
maildndfmknlDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEgkkykvpgsmqkvpgpmqkvpgpmqkvpgpmqklslt
maildndfmknLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKvpgpmqkvpgpmqkvpgpmqklslt
MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPGPMQKLSLT
******DFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKY*********************************
MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSM*KVPGPMQKVPGPMQKVPGP*******
MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPGPMQKLSLT
*AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPGPMQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPGPMQKLSLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query86 2.2.26 [Sep-21-2011]
Q03043 1088 cGMP-dependent protein ki no N/A 0.627 0.049 0.796 2e-18
Q13976 671 cGMP-dependent protein ki yes N/A 0.627 0.080 0.759 3e-17
P00516 671 cGMP-dependent protein ki yes N/A 0.627 0.080 0.759 3e-17
P0C605 671 cGMP-dependent protein ki yes N/A 0.627 0.080 0.759 3e-17
O77676 671 cGMP-dependent protein ki yes N/A 0.627 0.080 0.740 8e-17
Q03042 768 cGMP-dependent protein ki no N/A 0.627 0.070 0.481 1e-09
Q13237 762 cGMP-dependent protein ki no N/A 0.581 0.065 0.450 1e-05
Q64595 762 cGMP-dependent protein ki no N/A 0.581 0.065 0.431 2e-05
Q61410 762 cGMP-dependent protein ki no N/A 0.581 0.065 0.411 8e-05
A8X6H1 749 cGMP-dependent protein ki N/A N/A 0.627 0.072 0.388 0.0002
>sp|Q03043|KGP24_DROME cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B OS=Drosophila melanogaster GN=for PE=1 SV=3 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 2   AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55
           AILDNDFMKNLD+TQIREIVDCMYPV+Y A ++IIKEGDVGSIVYVME  + +V
Sbjct: 514 AILDNDFMKNLDLTQIREIVDCMYPVKYPAKNLIIKEGDVGSIVYVMEDGRVEV 567





Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|Q13976|KGP1_HUMAN cGMP-dependent protein kinase 1 OS=Homo sapiens GN=PRKG1 PE=1 SV=3 Back     alignment and function description
>sp|P00516|KGP1_BOVIN cGMP-dependent protein kinase 1 OS=Bos taurus GN=PRKG1 PE=1 SV=2 Back     alignment and function description
>sp|P0C605|KGP1_MOUSE cGMP-dependent protein kinase 1 OS=Mus musculus GN=Prkg1 PE=1 SV=1 Back     alignment and function description
>sp|O77676|KGP1_RABIT cGMP-dependent protein kinase 1 OS=Oryctolagus cuniculus GN=PRKG1 PE=1 SV=3 Back     alignment and function description
>sp|Q03042|KGP1_DROME cGMP-dependent protein kinase, isozyme 1 OS=Drosophila melanogaster GN=Pkg21D PE=1 SV=2 Back     alignment and function description
>sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo sapiens GN=PRKG2 PE=1 SV=1 Back     alignment and function description
>sp|Q64595|KGP2_RAT cGMP-dependent protein kinase 2 OS=Rattus norvegicus GN=Prkg2 PE=2 SV=1 Back     alignment and function description
>sp|Q61410|KGP2_MOUSE cGMP-dependent protein kinase 2 OS=Mus musculus GN=Prkg2 PE=2 SV=1 Back     alignment and function description
>sp|A8X6H1|EGL4_CAEBR cGMP-dependent protein kinase egl-4 OS=Caenorhabditis briggsae GN=egl-4 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
112983098 738 protein kinase, cGMP-dependent, type I [ 0.627 0.073 0.870 1e-19
18643248 744 PKG-Ib [Bombyx mori] gi|18643250|gb|AAL7 0.627 0.072 0.870 2e-19
255349294 744 cGMP-dependent protein kinase G [Spodopt 0.627 0.072 0.851 3e-19
110225911 743 PKG/For protein [Lobesia botrana] 0.627 0.072 0.851 4e-19
357605198164 hypothetical protein KGM_02249 [Danaus p 0.569 0.298 0.918 7e-19
402502111 634 cGMP-dependent protein kinase, partial [ 0.627 0.085 0.833 9e-19
158299488 303 AGAP008864-PA [Anopheles gambiae str. PE 0.558 0.158 0.916 1e-18
157117039 827 cgmp-dependent protein kinase [Aedes aeg 0.627 0.065 0.833 2e-18
170038391 311 cGMP-dependent protein kinase [Culex qui 0.558 0.154 0.916 3e-18
260595791 592 cGMP-dependent protein kinase foraging p 0.627 0.091 0.833 4e-18
>gi|112983098|ref|NP_001037051.1| protein kinase, cGMP-dependent, type I [Bombyx mori] gi|18643252|gb|AAL76257.1|AF465602_1 PKG-II [Bombyx mori] Back     alignment and taxonomy information
 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 50/54 (92%)

Query: 2   AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55
           AILDNDFMKNL+MTQIREIVDCMYPVEY AGSIIIKEGDVGSIVYVME  + +V
Sbjct: 171 AILDNDFMKNLEMTQIREIVDCMYPVEYAAGSIIIKEGDVGSIVYVMEEGRVEV 224




Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18643248|gb|AAL76255.1|AF465600_1 PKG-Ib [Bombyx mori] gi|18643250|gb|AAL76256.1|AF465601_1 PKG-Ia [Bombyx mori] Back     alignment and taxonomy information
>gi|255349294|gb|ACU09499.1| cGMP-dependent protein kinase G [Spodoptera exigua] Back     alignment and taxonomy information
>gi|110225911|gb|ABG56236.1| PKG/For protein [Lobesia botrana] Back     alignment and taxonomy information
>gi|357605198|gb|EHJ64502.1| hypothetical protein KGM_02249 [Danaus plexippus] Back     alignment and taxonomy information
>gi|402502111|gb|ADP94162.2| cGMP-dependent protein kinase, partial [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|158299488|ref|XP_552730.3| AGAP008864-PA [Anopheles gambiae str. PEST] gi|157013542|gb|EAL38953.3| AGAP008864-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157117039|ref|XP_001652946.1| cgmp-dependent protein kinase [Aedes aegypti] gi|108876230|gb|EAT40455.1| AAEL007826-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170038391|ref|XP_001847034.1| cGMP-dependent protein kinase [Culex quinquefasciatus] gi|167882011|gb|EDS45394.1| cGMP-dependent protein kinase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|260595791|gb|ACX46913.1| cGMP-dependent protein kinase foraging protein [Mythimna separata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query86
FB|FBgn0000721 1088 for "foraging" [Drosophila mel 0.627 0.049 0.796 8.5e-17
ZFIN|ZDB-GENE-040426-1308 667 prkg1a "protein kinase, cGMP-d 0.627 0.080 0.759 4.7e-16
UNIPROTKB|Q5SQU3 659 PRKG1 "cGMP-dependent protein 0.627 0.081 0.759 7.6e-16
UNIPROTKB|P00516 671 PRKG1 "cGMP-dependent protein 0.627 0.080 0.759 7.8e-16
UNIPROTKB|Q13976 671 PRKG1 "cGMP-dependent protein 0.627 0.080 0.759 7.8e-16
MGI|MGI:108174 671 Prkg1 "protein kinase, cGMP-de 0.627 0.080 0.759 7.8e-16
UNIPROTKB|F1NE85 685 F1NE85 "cGMP-dependent protein 0.627 0.078 0.759 8.1e-16
UNIPROTKB|F1MY76 686 PRKG1 "cGMP-dependent protein 0.627 0.078 0.759 8.1e-16
UNIPROTKB|O77676 671 PRKG1 "cGMP-dependent protein 0.627 0.080 0.740 2.1e-15
WB|WBGene00015650 617 pkg-2 [Caenorhabditis elegans 0.534 0.074 0.617 3.1e-09
FB|FBgn0000721 for "foraging" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 220 (82.5 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query:     2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55
             AILDNDFMKNLD+TQIREIVDCMYPV+Y A ++IIKEGDVGSIVYVME  + +V
Sbjct:   514 AILDNDFMKNLDLTQIREIVDCMYPVKYPAKNLIIKEGDVGSIVYVMEDGRVEV 567




GO:0004690 "cyclic nucleotide-dependent protein kinase activity" evidence=ISS
GO:0030536 "larval feeding behavior" evidence=IMP;TAS
GO:0004692 "cGMP-dependent protein kinase activity" evidence=NAS;IDA
GO:0006468 "protein phosphorylation" evidence=NAS;IDA
GO:0008345 "larval locomotory behavior" evidence=IMP
GO:0046959 "habituation" evidence=IMP
GO:0004674 "protein serine/threonine kinase activity" evidence=NAS
GO:0007631 "feeding behavior" evidence=TAS
GO:0008016 "regulation of heart contraction" evidence=IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=IDA
GO:0007616 "long-term memory" evidence=IMP
GO:0007614 "short-term memory" evidence=IMP
GO:0032095 "regulation of response to food" evidence=IMP
ZFIN|ZDB-GENE-040426-1308 prkg1a "protein kinase, cGMP-dependent, type Ia" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SQU3 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P00516 PRKG1 "cGMP-dependent protein kinase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13976 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108174 Prkg1 "protein kinase, cGMP-dependent, type I" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE85 F1NE85 "cGMP-dependent protein kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MY76 PRKG1 "cGMP-dependent protein kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O77676 PRKG1 "cGMP-dependent protein kinase 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
WB|WBGene00015650 pkg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P00516KGP1_BOVIN2, ., 7, ., 1, 1, ., 1, 20.75920.62790.0804yesN/A
O77676KGP1_RABIT2, ., 7, ., 1, 1, ., 1, 20.74070.62790.0804yesN/A
P0C605KGP1_MOUSE2, ., 7, ., 1, 1, ., 1, 20.75920.62790.0804yesN/A
Q13976KGP1_HUMAN2, ., 7, ., 1, 1, ., 1, 20.75920.62790.0804yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 1e-10
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 1e-07
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 8  FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVY-VMEGK 51
            KNLD  ++RE+ D + PV Y AG +II++GDVG   Y ++ G+
Sbjct: 1  LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGE 45


Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
3shr_A 299 Crystal Structure Of Cgmp-Dependent Protein Kinase 5e-18
3ocp_A139 Crystal Structure Of Camp Bound Cgmp-Dependent Prot 8e-18
3pvb_B160 Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca 4e-05
3fhi_B154 Crystal Structure Of A Complex Between The Catalyti 5e-05
1rl3_A 288 Crystal Structure Of Camp-free R1a Subunit Of Pka L 9e-05
1ne4_A 283 Crystal Structure Of Rp-Camp Binding R1a Subunit Of 1e-04
2qcs_B 291 A Complex Structure Between The Catalytic And Regul 1e-04
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals Novel Site Of Interchain Communication Length = 299 Back     alignment and structure

Iteration: 1

Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 41/55 (74%), Positives = 47/55 (85%) Query: 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVP 56 AILDNDFMKNL+++QI+EIVDCMYPVEY S IIKEGDVGS+VYVME K +V Sbjct: 40 AILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT 94
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein Kinase(92-227) Length = 139 Back     alignment and structure
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 160 Back     alignment and structure
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 154 Back     alignment and structure
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288 Back     alignment and structure
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283 Back     alignment and structure
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query86
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 7e-17
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 1e-16
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 4e-16
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 7e-15
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 9e-08
3of1_A 246 CAMP-dependent protein kinase regulatory subunit; 7e-14
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-07
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 2e-13
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-07
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 8e-13
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 5e-07
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 3e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 3e-07
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 2e-10
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 2e-07
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-08
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 4e-08
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 6e-07
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 2e-06
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 6e-06
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 8e-06
2pqq_A149 Putative transcriptional regulator; APC7345, strep 3e-05
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 4e-05
3ukn_A212 Novel protein similar to vertebrate potassium VOL 9e-05
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 2e-04
1ft9_A 222 Carbon monoxide oxidation system transcription reg 3e-04
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 3e-04
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 3e-04
1o5l_A 213 Transcriptional regulator, CRP family; TM1171, str 3e-04
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 4e-04
3d0s_A 227 Transcriptional regulatory protein; CAMP receptor 4e-04
3e97_A 231 Transcriptional regulator, CRP/FNR family; YP_6044 5e-04
2fmy_A 220 COOA, carbon monoxide oxidation system transcripti 5e-04
4ev0_A 216 Transcription regulator, CRP family; CAMP binding, 6e-04
3fx3_A 237 Cyclic nucleotide-binding protein; helix_TURN_heli 7e-04
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
 Score = 69.3 bits (170), Expect = 7e-17
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 2  AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61
          AI  N    +LD  +  +I D M+PV +IAG  +I++GD G   YV++  +  V  + + 
Sbjct: 39 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEW 98

Query: 62 V 62
           
Sbjct: 99 A 99


>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.51
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.45
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.43
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.43
3of1_A 246 CAMP-dependent protein kinase regulatory subunit; 99.42
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.41
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.41
1zyb_A 232 Transcription regulator, CRP family; NP_813211.1, 99.41
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.41
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.41
4ev0_A 216 Transcription regulator, CRP family; CAMP binding, 99.4
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.38
3dv8_A 220 Transcriptional regulator, CRP/FNR family; cyclic 99.37
3iwz_A 230 CAP-like, catabolite activation-like protein; XCC, 99.37
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.36
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.36
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.36
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.35
3dkw_A 227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.35
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.34
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.34
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.33
3fx3_A 237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.33
3e97_A 231 Transcriptional regulator, CRP/FNR family; YP_6044 99.32
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.31
3d0s_A 227 Transcriptional regulatory protein; CAMP receptor 99.3
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 99.3
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 99.3
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.28
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.28
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 99.26
2gau_A 232 Transcriptional regulator, CRP/FNR family; structu 99.25
2fmy_A 220 COOA, carbon monoxide oxidation system transcripti 99.22
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.2
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.18
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.18
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.17
1ft9_A 222 Carbon monoxide oxidation system transcription reg 99.16
3ryp_A 210 Catabolite gene activator; CAMP receptor protein ( 99.15
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.14
2oz6_A 207 Virulence factor regulator; winged helix, helix-tu 99.07
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.04
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.03
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.01
2bgc_A 238 PRFA; bacterial infection, human pathogen, transcr 99.01
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 98.99
3e6c_C 250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 98.98
3kcc_A 260 Catabolite gene activator; helix-turn-helix, CAMP, 98.97
1o5l_A 213 Transcriptional regulator, CRP family; TM1171, str 98.93
3la7_A 243 Global nitrogen regulator; activator, DNA-binding, 98.71
2zcw_A 202 TTHA1359, transcriptional regulator, FNR/CRP famil 98.45
3b02_A 195 Transcriptional regulator, CRP family; structural 98.42
2xp1_A178 SPT6; transcription, IWS1, histone chaperone, mRNA 83.97
3rns_A 227 Cupin 2 conserved barrel domain protein; structura 83.08
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 80.72
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
Probab=99.51  E-value=2.9e-14  Score=88.18  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc---------ccCccCcc
Q psy14743          2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG---------PMQKVPGP   72 (86)
Q Consensus         2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~---------~~~~~~~~   72 (86)
                      .|+++++|++|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|+++..+.++..         .-+++||+
T Consensus         7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~   86 (142)
T 3mdp_A            7 RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGV   86 (142)
T ss_dssp             GGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECG
T ss_pred             HHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEech
Confidence            478999999999999999999999999999999999999999999999999999875544321         24678888


Q ss_pred             cCCCC
Q psy14743         73 MQKVP   77 (86)
Q Consensus        73 ~~~~~   77 (86)
                      ++-..
T Consensus        87 ~~~~~   91 (142)
T 3mdp_A           87 SSLIK   91 (142)
T ss_dssp             GGSST
T ss_pred             HHHcC
Confidence            76553



>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 86
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 7e-09
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 8e-09
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 1e-07
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 8e-07
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 2e-06
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 2e-06
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 2e-05
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 5e-05
d1i5za2132 b.82.3.2 (A:6-137) Catabolite gene activator prote 2e-04
d1o5la1129 b.82.3.2 (A:1-129) CRP-like transcriptional regula 2e-04
d2oz6a2134 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei 3e-04
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]
 Score = 47.0 bits (111), Expect = 7e-09
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 2  AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61
          AI  N    +LD  +  +I D M+PV +IAG  +I++GD G   YV++  +  V  + + 
Sbjct: 21 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEW 80


>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129 Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query86
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.57
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.54
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.53
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.52
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.51
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.5
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.47
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.43
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.35
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.3
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.3
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.16
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.16
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.09
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.06
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 98.96
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 98.67
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 89.76
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 86.18
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57  E-value=1.1e-15  Score=95.66  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc-------ccCccCcccC
Q psy14743          2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG-------PMQKVPGPMQ   74 (86)
Q Consensus         2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~-------~~~~~~~~~~   74 (86)
                      .|+++|+|++|+++.++.|+..++.+.|++|++|+++||.++.+|+|.+|.|+++..+.....       .-+.+||+|+
T Consensus         7 ~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~   86 (137)
T d1wgpa_           7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDEL   86 (137)
T ss_dssp             SCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHH
T ss_pred             HHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchh
Confidence            489999999999999999999999999999999999999999999999999998765433221       2367899875



>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure