Psyllid ID: psy15051
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | 2.2.26 [Sep-21-2011] | |||||||
| P07192 | 574 | Maltase A3 OS=Drosophila | no | N/A | 0.440 | 0.817 | 0.293 | 2e-56 | |
| Q17058 | 567 | Alpha-glucosidase OS=Apis | yes | N/A | 0.471 | 0.885 | 0.288 | 3e-53 | |
| O16099 | 594 | Maltase 2 OS=Drosophila v | N/A | N/A | 0.246 | 0.442 | 0.394 | 2e-46 | |
| O16098 | 632 | Maltase 1 OS=Drosophila v | N/A | N/A | 0.230 | 0.387 | 0.378 | 2e-40 | |
| P21332 | 558 | Oligo-1,6-glucosidase OS= | yes | N/A | 0.430 | 0.820 | 0.270 | 2e-40 | |
| P07190 | 577 | Probable maltase H OS=Dro | no | N/A | 0.247 | 0.457 | 0.324 | 2e-38 | |
| P28904 | 551 | Trehalose-6-phosphate hyd | N/A | N/A | 0.421 | 0.814 | 0.268 | 3e-37 | |
| Q45101 | 555 | Oligo-1,6-glucosidase OS= | yes | N/A | 0.439 | 0.843 | 0.25 | 4e-35 | |
| Q9Z3R8 | 551 | Probable alpha-glucosidas | yes | N/A | 0.446 | 0.862 | 0.241 | 2e-34 | |
| Q54796 | 535 | Glucan 1,6-alpha-glucosid | yes | N/A | 0.413 | 0.822 | 0.238 | 5e-34 |
| >sp|P07192|MAL3_DROME Maltase A3 OS=Drosophila melanogaster GN=Mal-A3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/528 (29%), Positives = 250/528 (47%), Gaps = 59/528 (11%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WWK YQI SFKDS+ DG+GDL +GI +++ YLKE+G+ W
Sbjct: 23 WWKTGQFYQIYPRSFKDSDGDGVGDL---------------IGITQQLPYLKEIGITATW 67
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDE------------LVKLVHSKGKQKIS 663
L+P ++ P D GYD+++ + FGTMEDF+ ++ V + +
Sbjct: 68 LSPIFTSPMADFGYDVADLKGIDPIFGTMEDFEALLARAKELDIKIILDFVPNHTSDECD 127
Query: 664 QKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESM-EHRA 722
+ Y Y++ I N V G+ W Q +A + + A
Sbjct: 128 WFIRSAAGEEEYKDFYVWHTGKVVNGIRQPPTNWVSVFRGSM-WTWNEQRQAYYLHQFHA 186
Query: 723 GMKILVEFVPNHSSNKHD----WFIKSAQ--KIDPYTNYYV--------WKDGLNGKPGT 768
L P D W K A +ID + Y W D + +
Sbjct: 187 KQPDLNYRNPKVVEAMKDVLRFWLRKGAYGFRIDAVPHVYEIPADADGNWPDEPRNEAVS 246
Query: 769 PPNNW---KHINITSR----EVMRSQKDVVQSFPLIL-----MIITEAYSPSLEKVAKYY 816
P ++ +HI T + E++ + +DV++ L +++TEAYSP LE + +YY
Sbjct: 247 DPEDYTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAYSP-LEVLMQYY 305
Query: 817 GTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT 876
G G G+ + N+E++ K +S+A +++ +L ++P G+ ++W+ G H +RI +
Sbjct: 306 GNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQVANWVFGNHDQSRIGS 365
Query: 877 RYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRD 936
R D +DA NM+ L LPG +VT+ G+E+GM + +ED DP+ + + ++ RD
Sbjct: 366 RLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVWISWEDTVDPQACQSNEQEFERLTRD 425
Query: 937 GSRVPFQWNDQENAGFSKAK-SWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSG 995
R PFQW+D+ NAGFS A +WLPV NY +N + E+ SH +VYK L LR
Sbjct: 426 PVRTPFQWSDEVNAGFSNASVTWLPVASNYKLVNVKKERGIALSHLNVYKQLRALR-DEP 484
Query: 996 AVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDLSDCI 1042
++ GD ++ V R+ G S +IN+N E+++L
Sbjct: 485 TLKQGDVSVTAIGPNVLAFKRSLAGYKSYITLININDDVESINLDSVF 532
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Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0 |
| >sp|Q17058|MAL1_APIME Alpha-glucosidase OS=Apis mellifera PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 162/562 (28%), Positives = 262/562 (46%), Gaps = 60/562 (10%)
Query: 533 VALLVLLSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLE 592
V L+ LS + + N KE + ++YQ+ SFKDSN DGIGD+ G
Sbjct: 6 VFCLMALSIVDAAWKPLPENLKE---DLIVYQVYPRSFKDSNGDGIGDIEG--------- 53
Query: 593 LTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVK 652
I EK+D+ E+GV+ WL+P Y P D GYDISN+T+V FGT+ D D LV
Sbjct: 54 ------IKEKLDHFLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVS 107
Query: 653 LVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYL-NPVYAGSGNQ----NW 707
H KG + I + S Q H + + ++ Y+ +P +G + NW
Sbjct: 108 AAHEKGLKIILDFVPNHTSDQ---HEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTNW 164
Query: 708 RAGNQNRAESMEHRAGMKILVEFVPNHSS-NKHD-------------WFIKSAQ--KID- 750
A S L +F P N ++ W + ++D
Sbjct: 165 VGVFGGSAWSWREERQAYYLHQFAPEQPDLNYYNPVVLDDMQNVLRFWLRRGFDGFRVDA 224
Query: 751 -PYT--NYYVWKDGLNGKPGTPPNNWKHINITSREV------MRSQKDVVQSFPLILMII 801
PY + + L+G+ P + I + ++ +R +DV+ FP ++
Sbjct: 225 LPYICEDMRFLDEPLSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLDEFPQPKHML 284
Query: 802 TEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKW 861
EAY+ +L KYY G N+ + SN+ D + +V+ ++ +P
Sbjct: 285 IEAYT-NLSMTMKYY----DYGADFPFNFAFIKNVSRDSNSSDFKKLVDNWMTYMPPSGI 339
Query: 862 SSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPE 921
+W+ G H R+ +R+ + + ++LLLPG AV + GDE+GM + +ED +DP+
Sbjct: 340 PNWVPGNHDQLRLVSRFGEEKARMITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQ 399
Query: 922 GYIFGKDNYLKVCRDGSRVPFQWND-QENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH 980
G GK+NY + RD +R PFQW+D S + +WL V+ NY T+N AEKK K S
Sbjct: 400 GCGAGKENYQTMSRDPARTPFQWDDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSF 459
Query: 981 YSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR-TEGSTSVYLIINLNSRTETVDLS 1039
++++K +L+ S + + N+ VF +R TE + S+Y I+N ++ + VDL
Sbjct: 460 FNMFKKFASLKK-SPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLK 518
Query: 1040 DCIENGGDVAIFTSSVNSGLAS 1061
+ +F ++ NS + S
Sbjct: 519 AFNNVPKKLNMFYNNFNSDIKS 540
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Converts sucrose in nectar to glucose and fructose. Apis mellifera (taxid: 7460) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|O16099|MAL2_DROVI Maltase 2 OS=Drosophila virilis GN=Mal-B2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 799 MIITEAYSPSLEKVAKYY-GTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
+++TEAY+ L+ + YY G +G+ L N+ + S+A+D + +L +P
Sbjct: 306 IMMTEAYA-DLQVLMDYYEDAGGVRGSQLPFNFHFITDVSGDSDARDFVYNIEKWLIYMP 364
Query: 858 SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMES-PILRYED 916
G ++W++G H R+ATR+ P VDAMNML L LPG AVT+ G+ELGM+ + +ED
Sbjct: 365 RGHTANWVMGNHDKPRVATRFGPASVDAMNMLLLTLPGVAVTYNGEELGMQDYDEISWED 424
Query: 917 QRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS-KAKSWLPVHPNYWTLNAQAEKK 975
DP I GK +Y KV RD R PFQW++ NAGFS AK+WLPV+PNY LN +A+K+
Sbjct: 425 TVDPPARIAGKLDYKKVSRDPERTPFQWSNATNAGFSTAAKTWLPVNPNYLVLNLEAQKQ 484
Query: 976 TKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSRTE 1034
SHY VYK L LR +R G + I + VF RT + ++ IIN++++ +
Sbjct: 485 AVKSHYKVYKSLIELRKLP-VLRRGRFSIEPLSRTVFAFKRTLKDYDTLVTIINVSAKEQ 543
Query: 1035 TVDLSDCIENGGDVAIFTSSVNSGLASGK 1063
V+L+D I + + + V+S A G+
Sbjct: 544 LVNLTDFINRPQKLVVEVAGVDSVYAPGQ 572
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Drosophila virilis (taxid: 7244) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|O16098|MAL1_DROVI Maltase 1 OS=Drosophila virilis GN=Mal-B1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 141/251 (56%), Gaps = 6/251 (2%)
Query: 797 ILMIITEAYSPSLEKVAKYYGTGD-TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKS 855
+ +++TE Y+ L + YY D QG H N++ + + A S A D + +L
Sbjct: 342 VRIMMTEGYA-DLSLLMNYYEDEDGVQGAHFPFNFDFITELNANSAAPDFVYFIQRWLTY 400
Query: 856 LPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGM-ESPILRY 914
+P G ++W++G H R+A+RY VDAMNML + LPG +T+ G+ELGM + + +
Sbjct: 401 MPPGHSANWVMGNHDNPRVASRYGVGTVDAMNMLMMTLPGIGITYYGEELGMVDYRDISW 460
Query: 915 EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPNYWTLNAQAE 973
D D G DNY V RD R P QW+D++NAGFS S WLPVHPNY LN +
Sbjct: 461 NDTVDQPACDAGLDNYKWVSRDPERTPMQWSDEKNAGFSTGDSTWLPVHPNYQELNLLTQ 520
Query: 974 KKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSR 1032
++ SHY VY+ L LR S +R G + N VF + R G ++ +IN+++R
Sbjct: 521 QEATYSHYKVYQSLIKLRQ-SRVLRDGSFTAQALNRNVFAIKRELRGQPTLLTVINVSNR 579
Query: 1033 TETVDLSDCIE 1043
T+ VD+S+ I+
Sbjct: 580 TQQVDVSNFID 590
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Drosophila virilis (taxid: 7244) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|P21332|O16G_BACCE Oligo-1,6-glucosidase OS=Bacillus cereus GN=malL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/554 (27%), Positives = 238/554 (42%), Gaps = 96/554 (17%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K+WWK +V+YQI SF DSN DGIGDLRG II K+DYLKELG++
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG---------------IISKLDYLKELGID 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
+WL+P Y PN D GYDIS++ ++ +FGTMED+DEL+ +H + + + + S
Sbjct: 47 VIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSD 106
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ + +K+ + ++ P G NW A A + L F
Sbjct: 107 EHNWFIESRKSKDNKYRDYYIW-RPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSK 165
Query: 733 NHSSNKHDWFIKSAQKIDPYTNYYVW-KDGLNG-----------KPGTP----------- 769
D + D Y W + G++G + G P
Sbjct: 166 KQPDLNWD---NEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVS 222
Query: 770 --------PNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT 821
PN K+++ + EV+ S D+ M + E + E+ AK Y +
Sbjct: 223 GHKHFMNGPNIHKYLHEMNEEVL-SHYDI--------MTVGEMPGVTTEE-AKLYTGEER 272
Query: 822 QGTHLSVNYEIMNKFGATSNAKD--------LENVVNAYLKSLPSGKWSSWMVGGHSITR 873
+ + +E M+ D L+ + + K+L W+S H R
Sbjct: 273 KELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPR 332
Query: 874 IATRYSPD---LVDAMNMLTLLL---PGTAVTFAGDELGMESPILRYE---DQRDPEGYI 924
+ +R+ D +++ ML +L GT + G+E+GM + +R+E + RD E
Sbjct: 333 VVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTN--VRFESIDEYRDIETLN 390
Query: 925 FGKDN---------------YLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLN 969
K+ Y+K RD +R P QW+DQ +AGF+ + W+ V+PNY +N
Sbjct: 391 MYKEKVMERGEDIEKVMQSIYIK-GRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEIN 449
Query: 970 AQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN-YVFILTRTEGSTSVYLIIN 1028
+ + K S + YK L LR + V G Y + NN +F RT G + +I N
Sbjct: 450 VKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLILENNPSIFAYVRTYGVEKLLVIAN 509
Query: 1029 LNSRTETVDLSDCI 1042
+ +L + I
Sbjct: 510 FTAEECIFELPEDI 523
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Bacillus cereus (taxid: 1396) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|P07190|MAL2_DROME Probable maltase H OS=Drosophila melanogaster GN=LvpH PE=2 SV=2 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 147/268 (54%), Gaps = 4/268 (1%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPS 858
+++TEAY+ S E + YYG G G+H+ N++ + S A + + ++ ++P
Sbjct: 293 LLMTEAYT-SFENIMTYYGNGVRNGSHIPFNFDFLTSINNASKAGEYVEHIKKWMDAMPE 351
Query: 859 GKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQR 918
G +++W++G H R+A+R+ D +N+L LPG AVT+ G+ELGM + +ED
Sbjct: 352 GVYANWVLGNHDNKRVASRFGVQRTDLINILLQTLPGHAVTYNGEELGMTDVWISWEDTV 411
Query: 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-SWLPVHPNYWTLNAQAEKKTK 977
DP DNY RD +R P+QW+ AGF+ A +WLPV +Y T NA + +
Sbjct: 412 DPNACNSDPDNYYARSRDPARSPYQWDASSKAGFTSADHTWLPVADDYKTNNALQQLRAP 471
Query: 978 PSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLII-NLNSRTETV 1036
SH ++K L +R + R G+ I ++ V I +R + + +Y+I+ NL S ++T+
Sbjct: 472 RSHLQIFKKLVRVRKEP-SFRQGELNIQAIDDDVIIYSRQKTGSDLYVIVLNLGSTSKTL 530
Query: 1037 DLSDCIENGGDVAIFTSSVNSGLASGKL 1064
DL+ E G + T+S++S G +
Sbjct: 531 DLTKYYELGTQAEVITTSLSSQYIDGDV 558
|
Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|P28904|TREC_ECOLI Trehalose-6-phosphate hydrolase OS=Escherichia coli (strain K12) GN=treC PE=3 SV=3 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 142/529 (26%), Positives = 225/529 (42%), Gaps = 80/529 (15%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WW+N VIYQI SF+D+ G GDLRG +I+ +DYL +LGV+ +W
Sbjct: 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRG---------------VIQHLDYLHKLGVDAIW 51
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLY 675
LTPFY P D GYD++N+T + +GT++DFDELV S+G + I + S Q
Sbjct: 52 LTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQ-- 109
Query: 676 CHMYMYAICADKFAIHSVYL----------NPVYAGSGNQNWRAGNQNRA---------- 715
H + + Y+ N + G WR ++
Sbjct: 110 -HAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQ 168
Query: 716 -----ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPP 770
E+ RA +K + EF + + + + DP + DG P
Sbjct: 169 ADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPR 228
Query: 771 NNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT------ 824
+ + ++ +R+V P LM + E S SLE +Y ++ +
Sbjct: 229 AH-EFLHEMNRDVFT---------PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFH 278
Query: 825 HLSVNYEIMNKFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPD-- 881
HL V+Y K+ A + L+ + + + + + W++ H RI +R+ +
Sbjct: 279 HLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGE 338
Query: 882 -LVDAMNMLTLLL---PGTAVTFAGDELGMESP-ILRYEDQRDPEGY-IFGK-------- 927
V A ML ++L GT + G+E+GM +P R D RD E +F +
Sbjct: 339 YRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDA 398
Query: 928 DNYLKV----CRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSV 983
D L + RD SR P QW++ +NAGF+ + W+ + NY +N +A S +
Sbjct: 399 DELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYT 458
Query: 984 YKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSR 1032
Y+ L LR + G+Y+ PN+ V R E L+I SR
Sbjct: 459 YQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSR 507
|
Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 9 EC: 3 |
| >sp|Q45101|O16G_BACCO Oligo-1,6-glucosidase OS=Bacillus coagulans GN=malL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 135/540 (25%), Positives = 226/540 (41%), Gaps = 72/540 (13%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
EWWK V+YQI SF D+N DGIGDLRG I++K+DYLK LG++ +
Sbjct: 3 EWWKKAVVYQIYPRSFYDTNGDGIGDLRG---------------IMDKLDYLKTLGIDCI 47
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQL 674
W++P Y P D GYDI ++ ++ K FGT ED D L+ H++G + + + S +
Sbjct: 48 WISPVYDSPQDDNGYDIRDYRKIDKMFGTNEDMDRLLDEAHARGIKIVMDLVVNHTSDEH 107
Query: 675 YCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNH 734
+ + + + +P G+ NW + A + G L F
Sbjct: 108 AWFVESRKSKDNPYRDFYFWKDPKPDGTPPNNWGSMFSGSAWEYDETTGQYYLHYFSKKQ 167
Query: 735 SSNKHDWFIKSAQKIDPYTNYYVWKD-GLNG-KPGTPPNNWKHINITSREVMRSQKDVVQ 792
+W + +K + Y W D G++G + + K ++ E+ QK +
Sbjct: 168 PD--LNWENEKVRK-EIYDMMKFWMDKGVDGWRMDVIGSISKFLDFPDYELPEGQKYGIG 224
Query: 793 SF----PLILMIITEAYSPSLEK---------------VAKYYGTGDTQGTHLSVNYEIM 833
+ P + I E L K +A+ Y D ++ N+E M
Sbjct: 225 KYHANGPRLHAFIQEMNREVLSKYDCMTVGEAIGSDVEIARKYTGPDRHELNMIFNFEHM 284
Query: 834 N---KFGATS--------NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATR----- 877
+ K G+ + + +L+ +++ + L W++ H R+ +R
Sbjct: 285 DVDTKPGSPAGKWALKPFDLVELKQILSRWQYELADTGWNALYFENHDQARVVSRWGNDT 344
Query: 878 -YSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRD-----------PEGYIF 925
Y + A + L GT + G+E+GM + L E+ D E I
Sbjct: 345 TYRAECAKAFATILHGLKGTPFIYQGEEIGMVNADLELEEYDDIEIRNAYQELVMENQIM 404
Query: 926 GKDNYL----KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHY 981
KD +L K RD +R P QW+ NAGF+ WL V+ Y +N + S +
Sbjct: 405 SKDEFLTAVRKKGRDNARTPMQWDGSFNAGFTTGTPWLKVNSRYSEINVAKALQEPDSIF 464
Query: 982 SVYKDLTTLRATSGAVRMGDYKISTPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
Y+ L LR + G Y++ P++ ++++ TR S + + NL+ T + D D
Sbjct: 465 YYYQSLIKLRHSYDVFTDGRYELLMPDHPHLYVYTRENESEKLLVAANLSENTVSFDQPD 524
|
Bacillus coagulans (taxid: 1398) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q9Z3R8|AGLA_RHIME Probable alpha-glucosidase OS=Rhizobium meliloti (strain 1021) GN=aglA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/538 (24%), Positives = 223/538 (41%), Gaps = 63/538 (11%)
Query: 541 TASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGII 600
T + SS+ ++WW+ VIYQI SF+D+N DGIGDL+G I
Sbjct: 2 TMNETTSSLLEPDRDWWRGAVIYQIYPRSFQDTNGDGIGDLQG---------------IT 46
Query: 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQ 660
++ ++ LG + +W++PF++ P D GYD+SN+ +V FGT+EDFD L+ H G +
Sbjct: 47 ARLPHIAGLGADAIWISPFFTSPMRDFGYDVSNYVDVDPIFGTLEDFDALIAEAHRLGLR 106
Query: 661 KISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEH 720
+ + S + + + ++ A V+ + G+ NW + A +
Sbjct: 107 VMIDLVLSHTSDRHPWFVESRSSRSNAKADWYVWADSKPDGTPPNNWLSIFGGSAWQWDP 166
Query: 721 RAGMKILVEFVPNHSS-NKHDWFIKSA----------QKIDPY----TNYYVWKDGLNGK 765
L F+ + N H+ ++ A + +D + N+Y L
Sbjct: 167 TRLQYYLHNFLTSQPDLNLHNPQVQEALLAVERFWLERGVDGFRLDTINFYFHDRELRDN 226
Query: 766 PG--------------TPPNNWKHINITSR----EVMRSQKDVVQSFPLILMIITEAYSP 807
P P N +HI +R E ++ + V+ FP I + S
Sbjct: 227 PALVPERRNASTAPAVNPYNYQEHIYDKNRPENLEFLKRFRAVMDEFPAIAAVGEVGDSQ 286
Query: 808 -SLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMV 866
LE +Y GD H+ +E + T + + V+ + ++ P G W+ W
Sbjct: 287 RGLEIAGEYTSGGDK--VHMCYAFEFLAPDRLTP--QRVAEVLRDFHRAAPEG-WACWAF 341
Query: 867 GGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDP 920
H + R +R++ + D + L + L GT + G+EL + L YED +DP
Sbjct: 342 SNHDVVRHVSRWADGVTDHDAHAKLLASLLMSLRGTVCIYQGEELALAEAELDYEDLQDP 401
Query: 921 EGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH 980
G F D RDG R P W + GFS A WLP+ ++ ++ S
Sbjct: 402 YGIQFWPD---FKGRDGCRTPMVWESLPDGGFSSATPWLPISQSHIPRAVAVQEGDPASV 458
Query: 981 YSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDL 1038
Y+ R + A+ G+ + + R+ G+ V+ + N++ T +L
Sbjct: 459 LHHYRRFLAFRKANPALAKGEIEFVETRGSLLGFLRSHGNEKVFCLFNMSDEAATKEL 516
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q54796|DEXB_STRPN Glucan 1,6-alpha-glucosidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=dexB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 224/542 (41%), Gaps = 102/542 (18%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
Q++WW N V+YQ+ SF DSN DG+GDL G I K+DYL +LG+
Sbjct: 2 QEKWWHNAVVYQVYPKSFMDSNGDGVGDLPG---------------ITSKLDYLAKLGIT 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
+WL+P Y P D GYDI+++ + FGTMED D+L+ + + I + S
Sbjct: 47 AIWLSPVYDSPMDDNGYDIADYQAIAAIFGTMEDMDQLIAEAKKRDIRIIMDLVVNHTSD 106
Query: 673 QLYCHMYMYAICADKFAIHSVY---------LNPVYAGSGNQNWRAGNQNRAESMEHRAG 723
+ H + C + + Y L+ +++GS A + ++G
Sbjct: 107 E---HAWFVEACENTDSPERDYYIWRDEPNDLDSIFSGS------------AWEYDEKSG 151
Query: 724 MKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREV 783
L F + + K QKI N+++ K G+ G +++
Sbjct: 152 QYYL-HFFSKKQPDLNWENEKLRQKIYEMMNFWIDK-GIGG---------FRMDVIDMIG 200
Query: 784 MRSQKDVVQSFPLI----------------LMIITEAYSPSLEKVAKYYGTGDTQGTHLS 827
+ VV + P++ L+ + E + + E +AK+Y D +G LS
Sbjct: 201 KIPDEKVVNNGPMLHPYLKEMNQATFGDKDLLTVGETWGATPE-IAKFY--SDPKGQELS 257
Query: 828 VNYEIMN------------KFGATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRI 874
+ ++ + + N L+ + N + L W+S H + RI
Sbjct: 258 MVFQFEHIGLQYQEGQPKWHYQKELNIAKLKEIFNKWQTELGVEDGWNSLFWNNHDLPRI 317
Query: 875 AT------RYSPDLVDAMNMLTLLLPGTAVTFAGDELGMES-PILRYEDQRDPEGYIFGK 927
+ Y A +L L+ GT + G+E+GM + P + D E + +
Sbjct: 318 VSIWGNDQEYREKSAKAFAILLHLMRGTPYIYQGEEIGMTNYPFETLDQVEDIESLNYAR 377
Query: 928 DNYLK-------------VCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
+ K + RD +R P QW++ +NAGFS + WL V+PNY +N Q
Sbjct: 378 EALEKGVPIEEIMDSIRVIGRDNARTPMQWDESKNAGFSTGQPWLAVNPNYEMINVQEAL 437
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034
S + Y+ L +R + + D+++ + VF R +G ++ NL++ +
Sbjct: 438 ANPDSIFYTYQKLVQIRKENSWLVRADFELLDTADKVFAYIRKDGDRRFLVVANLSNEEQ 497
Query: 1035 TV 1036
+
Sbjct: 498 DL 499
|
The physiological substrates may be short isomaltosaccharides. Streptococcus pneumoniae (taxid: 1313) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 7 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| 383856267 | 567 | PREDICTED: probable maltase H-like [Mega | 0.470 | 0.883 | 0.321 | 2e-66 | |
| 328702369 | 588 | PREDICTED: probable maltase L-like [Acyr | 0.455 | 0.824 | 0.303 | 2e-64 | |
| 357620398 | 581 | alpha amylase [Danaus plexippus] | 0.478 | 0.877 | 0.299 | 2e-63 | |
| 328702366 | 573 | PREDICTED: maltase 2-like [Acyrthosiphon | 0.469 | 0.872 | 0.301 | 4e-63 | |
| 306518660 | 583 | alpha amylase precursor [Bombyx mori] gi | 0.470 | 0.859 | 0.314 | 2e-62 | |
| 322797332 | 568 | hypothetical protein SINV_00822 [Solenop | 0.475 | 0.890 | 0.313 | 3e-62 | |
| 195116947 | 586 | GI24705 [Drosophila mojavensis] gi|19391 | 0.448 | 0.815 | 0.299 | 8e-62 | |
| 357620800 | 578 | alpha amylase [Danaus plexippus] | 0.448 | 0.826 | 0.307 | 1e-61 | |
| 195159471 | 564 | GL15372 [Drosophila persimilis] gi|19411 | 0.472 | 0.891 | 0.305 | 2e-61 | |
| 91081577 | 575 | PREDICTED: similar to GA13362-PA [Tribol | 0.470 | 0.871 | 0.303 | 6e-61 |
| >gi|383856267|ref|XP_003703631.1| PREDICTED: probable maltase H-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 183/570 (32%), Positives = 283/570 (49%), Gaps = 69/570 (12%)
Query: 535 LLVLLSTASSVLSSVRCNQKEWWKN-TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLEL 593
+ LL A S L +V W+ + VIYQI SFKDSN DGIGDL G
Sbjct: 1 MFRLLLLACSALVAVAAPSTAWYDHGAVIYQIYPRSFKDSNGDGIGDLNG---------- 50
Query: 594 TLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKL 653
I EK+D+L +LGV+ LW++P ++ P D GYDISN T++ D+GT+ DFD LV
Sbjct: 51 -----ITEKLDHLADLGVQALWMSPIFTSPQVDYGYDISNFTDIDPDYGTLADFDRLVAK 105
Query: 654 VHSKGKQKISQKQTKNRSHQLYCHMYMYAICA--DKFAIHSVYLNPVYAGSGN---QNWR 708
S G + I + S+Q H + + + V+ +P NW
Sbjct: 106 AKSLGLKVILDFVPNHSSNQ---HPWFLKSIKKISPYTDYYVWHDPKIVNGTRYPPNNWI 162
Query: 709 AGNQNRAESMEHRAGMKILVEF-VPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG--- 764
+ QN A L +F V N + +K Q++ ++++ K G++G
Sbjct: 163 SNFQNGAWEWNEERQQYYLHQFAVAQPDLNYRNEVLK--QEMKDVLSFWM-KRGVDGFRI 219
Query: 765 --------------KP-----GTPPNNWKHINITSREVMRSQKDVVQSFPLIL------- 798
+P G P N++++++ + DV++S+ +++
Sbjct: 220 DAINHLFEDPLFRDEPKANVTGVPENDYEYLDHIYTKNYDEVYDVLKSWRVLMDEFSTKT 279
Query: 799 -----MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL 853
MI+TEAY+ + KYY G T + N+ ++ S A D + ++ ++
Sbjct: 280 NSDYKMILTEAYANHTMTI-KYYDAGST----VPFNFMFISDLNNQSTAADFKTFIDRWV 334
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILR 913
S+P GK S+W+VG H R+A+R+ D +NML +LLPG +V + GDE+GME
Sbjct: 335 DSVPQGKVSNWVVGNHDNHRVASRFGTRRADQINMLAMLLPGVSVIYNGDEIGMEDRFFT 394
Query: 914 YEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-SWLPVHPNYWTLNAQA 972
YE+ DP G G D Y RD R PFQW++ +AGFS + +WLPVH NY LN QA
Sbjct: 395 YEETIDPAGCNSGPDRYTLRSRDPERTPFQWDNTTSAGFSTSNVTWLPVHTNYKCLNLQA 454
Query: 973 EKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSR 1032
EK+ K SHY V+K L+ L+ A+R K+ ++V + R GS + L+IN + +
Sbjct: 455 EKQAKESHYHVFKALSALKKVP-AIRHSYLKVLVLADHVLSVVRHIGSRAAVLLINFSDK 513
Query: 1033 TETVDLSDCIENGGDVAIFTSSVNSGLASG 1062
TV+++ ++ ++TSSV SG+ G
Sbjct: 514 PVTVNVTTSYVVAPELLVYTSSVGSGVLVG 543
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702369|ref|XP_001952163.2| PREDICTED: probable maltase L-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 271/556 (48%), Gaps = 71/556 (12%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
+WW++ +IYQI V SFKDSN DGIGD G I EK+DY K + V +
Sbjct: 33 DWWQSEIIYQIYVRSFKDSNGDGIGDFNG---------------ITEKVDYFKSINVGAV 77
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQL 674
WL+P + P D GYD+SN +V FGTM DFD L H +G + I + S +
Sbjct: 78 WLSPIFQSPQDDFGYDVSNFKQVDPLFGTMADFDRLRDAFHQRGIKVILDFVPNHTSDE- 136
Query: 675 YCHMYMYAICADK--FAIHSVYLNPVYAGSGNQ----NWRA---------GNQNRAESME 719
H + K + + V+ +P+ SGN+ NW N+ R +
Sbjct: 137 --HPWFTKSVQRKEPYTNYYVWKDPIIDASGNRTPPNNWLGVFNTGSAWEWNEERQQYYY 194
Query: 720 HRAGMK---------ILVEFVPN------------HSSNKHDWFIKSAQKIDPYTNYYV- 757
H +K ++VE + N + ++ + A D +Y V
Sbjct: 195 HAFQVKQPDLNYRCPMVVEEIKNIILFWLGRGIDGFRFDAVNYLYERADLEDESKSYKVG 254
Query: 758 -----WKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKV 812
+ ++ K P ++ + + RE++ D S + + E YSP L
Sbjct: 255 IMETDYDALIHDKTLDQPETYEMVRVW-RELL---DDYSSSEKVTNFFMVECYSP-LPNT 309
Query: 813 AKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT 872
+YYG + G H N+ ++N F S+A D++ V+ +++ ++P GKW +W++G H +
Sbjct: 310 MRYYGNATSAGAHFPFNFLLINAFNQQSDAYDVDRVIKSWMLNMPEGKWPNWVLGNHDNS 369
Query: 873 RIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLK 932
R+A+R +P LVD ++M LLLPGT +T+ GDE+G++ +R+ DP G G Y K
Sbjct: 370 RLASRTNPLLVDGLHMTQLLLPGTPITYYGDEMGVQDTYVRWSQTVDPAGRNVGILRYTK 429
Query: 933 VCRDGSRVPFQWNDQENAGFSKAK--SWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTL 990
RD +R PF W+D NAGF+ +WLPV+P+YW N K K SH Y+ L+ L
Sbjct: 430 FSRDPARSPFPWDDSVNAGFTNGTNGTWLPVNPDYWHENLVQLSKFK-SHLRTYRQLSRL 488
Query: 991 RATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDLSDCIENGGDV- 1048
R ++ GD + + +VF +R+ + +++IN S ETV++ + + +
Sbjct: 489 RQNPTIIK-GDLHVYVLSKWVFGFSRSFYDHPTFFVVINFGSELETVNIKEARQTLPKIL 547
Query: 1049 AIFTSSVNSGLASGKL 1064
+ SS+NSG +G +
Sbjct: 548 KVKVSSINSGYVTGNM 563
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357620398|gb|EHJ72605.1| alpha amylase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/578 (29%), Positives = 288/578 (49%), Gaps = 68/578 (11%)
Query: 536 LVLLST-----ASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRY 590
++LLS+ + +++ + EWW+ ++IYQI SF DS+ DG+GDL G
Sbjct: 4 IILLSSLVILCSGNIIKQENERELEWWETSIIYQIYPRSFADSDGDGVGDLPG------- 56
Query: 591 LELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDEL 650
I K+ Y+KELGV +WL+P + P D GYDI++ + +FG MEDF+EL
Sbjct: 57 --------ITSKLQYIKELGVGAIWLSPIFQSPMYDFGYDIADFYAIHDEFGNMEDFEEL 108
Query: 651 VKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICA-DKFAIHSVYLNPVYAGSGNQ---- 705
+K + + + S++ + A+ +K+ + V+ + V +GN+
Sbjct: 109 LKRADELDIKIVLDLVPNHTSNE--SMWFQEALNGNEKYYNYFVWEDGVIDENGNRQPPN 166
Query: 706 NWRAGNQNRAESMEHRAGMKILVEFV----------PNHSSNKHD----WFIKSAQ--KI 749
NWR+ + A G L +FV P+ + D W K ++
Sbjct: 167 NWRSHFRGSAWEYREEVGKYYLHQFVVGQPDLNYRNPDVINEMKDIIRFWLGKGVAGFRV 226
Query: 750 DPYTNYY-VWKDGLNGK-PGTP--------PNNWKHI-NITSRE------VMRSQKDVVQ 792
D + V K+ GK P P PN+ ++ +I +++ ++ +DV
Sbjct: 227 DAVNCLFEVDKELFGGKYPDEPLSGRLDVDPNSHDYLSHIYTKDQNETYYMVYEWRDVFD 286
Query: 793 SFP----LILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENV 848
F L +++TE Y+ S++ V +Y+G GD +G + N++++ A+S+A D++
Sbjct: 287 EFKEKDGLQRVMMTEVYA-SIQDVVRYFGEGDKKGAQMPFNFDLITDVDASSSAADIKRA 345
Query: 849 VNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGME 908
V+ +L +P + ++W+VG H +R+ATRY LVD +NM+ LLLPG VT+ G+E+GM
Sbjct: 346 VDKFLTYMPVDQSANWVVGNHDQSRMATRYGSSLVDGINMIVLLLPGVGVTYMGEEIGMV 405
Query: 909 SPILRYEDQRDPEGYIFGKD-NYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYW 966
+ +ED DP G NY+ V RD R PFQWN ++NAGFS A +WLPV Y
Sbjct: 406 DGFVSWEDTVDPSGCNTNDPINYVSVSRDPERTPFQWNSEKNAGFSVADNTWLPVAEGYQ 465
Query: 967 TLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLI 1026
TLN +A+++ + SH VY+ L LR R G Y N +F+ R + ++
Sbjct: 466 TLNVEAQREAERSHLKVYQALAKLRQQK-EFRYGRYDSLAINKDIFVFRRWYNGETYLVL 524
Query: 1027 INLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
+N+ +DL G+ ++ S++S G +
Sbjct: 525 VNMRDIKYEIDLGYFENVSGEASVVVRSIHSPKNEGDI 562
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702366|ref|XP_001943582.2| PREDICTED: maltase 2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 172/570 (30%), Positives = 283/570 (49%), Gaps = 70/570 (12%)
Query: 535 LLVLLSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT 594
++VL++ A S ++ + +WW+ VIYQ+ SFKDSN DG+GDL+G
Sbjct: 7 IVVLITIAFS--TNAEPAKLDWWQTGVIYQVYPRSFKDSNGDGVGDLKG----------- 53
Query: 595 LGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLV 654
I E ++ +E G+ +WL+P + P D GYDIS+ + +GTMEDF L + +
Sbjct: 54 ----IEEMAEHFQETGIGAIWLSPIFKSPLADFGYDISDFVSIDSTYGTMEDFLSLQRKL 109
Query: 655 HSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ----NWRAG 710
S G +I N S + D + + V+L+ +GN+ NWR
Sbjct: 110 KSLGV-RILLDFVPNHSSDEHEWFQKSVKKIDPYTDYYVWLDGKVDENGNKIPPNNWRNN 168
Query: 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY-VWKD-GLNG---- 764
A G L +F ++ + D S ++ N W D G++G
Sbjct: 169 FDGSAWEWSAERGQYYLHQF----AAKQPDLNYNSPALLEEMKNVLRFWLDIGVDGFRID 224
Query: 765 -----------------KPGTPPNNWKHINITSREVMRSQK---DVVQSFPLIL------ 798
P +N+ ++ + ++ R Q +V+ F +L
Sbjct: 225 ALPYIIEDIKFEDESVIHPNIVDDNYTYV-LLDHKLSRDQPGTYKIVEEFRAVLDEYTNR 283
Query: 799 -----MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL 853
+++ EAY+ S+ YY + T+ H+ N+ + TS+A D++N +N +L
Sbjct: 284 DENTRLMLVEAYA-SINYTMMYY-SQQTRRAHMPFNFNFITYLNKTSSAVDIKNTINLWL 341
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILR 913
++PSG+W++W++G H R+A+R+ D+VD MN L +LPGTAVT+ G+E+GM +R
Sbjct: 342 DNMPSGQWANWVMGNHDNKRVASRFGQDMVDPMNTLATMLPGTAVTYNGEEIGMADGTIR 401
Query: 914 YEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQA 972
++ DP G G Y RD R PF WND +NAGFS + ++WLPV+ NYW LN
Sbjct: 402 WDQTVDPFGKNGGMARYEANSRDPFRTPFHWNDFQNAGFSTSQRTWLPVNSNYWYLNLAF 461
Query: 973 EKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNS 1031
+K SHY YK L LR++ R G+ + T ++++ ILTR EG + Y+++N+ +
Sbjct: 462 QKACFRSHYQTYKTLLRLRSSPTIAR-GNLTMHTMSDWILILTRQLEGHETFYIVLNVGT 520
Query: 1032 RTETVDLSDCIENGG-DVAIFTSSVNSGLA 1060
E + L++ ++ + + SS+NS A
Sbjct: 521 EQEAITLNEHFKDVPLHMIVRASSINSWQA 550
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|306518660|ref|NP_001182391.1| alpha amylase precursor [Bombyx mori] gi|213495553|gb|ACJ49024.1| alpha amylase [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 185/588 (31%), Positives = 279/588 (47%), Gaps = 87/588 (14%)
Query: 532 WVALLVLLSTASSVLSSVRCNQKE--WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR 589
W ++LL VL V+C KE WW+ TV YQI SFKDS+ DGIGDL G
Sbjct: 5 WRIGIILLP----VLVLVQCQVKELDWWEKTVFYQIYPRSFKDSDGDGIGDLNG------ 54
Query: 590 YLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDE 649
I + ++YLKELGV WL+P + P D GYDIS+ + +++GTMEDF+
Sbjct: 55 ---------ITDSLEYLKELGVGATWLSPIFKSPMYDFGYDISDFYAIQEEYGTMEDFER 105
Query: 650 LVK------------LVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNP 697
L++ V + G + + + H+ Y Y Y + D + LNP
Sbjct: 106 LLQKAKELDIKIVLDFVPNHGSNESVWFEEALKGHEKY---YNYFVWEDGVEDENGKLNP 162
Query: 698 VYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD--------------WFI 743
NW + + A G L +FV + W
Sbjct: 163 ------PNNWVSVFRKSAWEYRKEVGKYYLHQFVIGQPDLNYRNPEVVEEMKNVIRFWLD 216
Query: 744 K--SAQKIDPYTNYY-VWKDGLNGK-PGTP--------PNNWKHIN-ITSR------EVM 784
K + ++D + + V K GK P P P+N+ +++ I ++ E++
Sbjct: 217 KGIAGFRVDAIAHLFEVDKTLFGGKYPDEPLAQNREIDPDNYDYLDHIYTKDHEETFEMV 276
Query: 785 RSQKDVVQSFP----LILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS 840
+DV+ + +++TEAYS S + KY+G G G + N+ ++++ +S
Sbjct: 277 YQWRDVLDEYKAKDGFTRVMMTEAYS-SPQITMKYFGDGVRAGAQMPFNFVLISEVSGSS 335
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTF 900
A +L+ ++ +L P K ++W+ G H R+A+RYS +LVD +NM+ +LLPG AVT+
Sbjct: 336 TAAELKYALDKFLTFKPVDKLANWVAGNHDNNRVASRYSVELVDGLNMIVMLLPGIAVTY 395
Query: 901 AGDELGMESPILRYEDQRDPEGYIFGKD---NYLKVCRDGSRVPFQWNDQENAGFSKA-K 956
G+E+GM + +ED DP G D NY V RD R PFQWN ++NAGFS K
Sbjct: 396 MGEEIGMVDGYVSWEDTVDPSG--CNTDDPINYWTVSRDPERTPFQWNSEKNAGFSTGDK 453
Query: 957 SWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR 1016
+WLPV Y TLN + +K T SH +VYK LT LR R G ++ N +F R
Sbjct: 454 TWLPVAEGYETLNVEIQKSTSRSHLNVYKQLTRLR-NEPVFRYGRFESVALNPDIFAFKR 512
Query: 1017 TEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
+INL +R T+DL+ G + + + + S G L
Sbjct: 513 WHDGEIYVTVINLKNRDHTIDLTYFEHVVGHLEVVLTDIRSKKVPGDL 560
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322797332|gb|EFZ19444.1| hypothetical protein SINV_00822 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 181/578 (31%), Positives = 293/578 (50%), Gaps = 72/578 (12%)
Query: 530 MNW-VALLVLLSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK 588
M+W + L LL AS+ + + + K WW NT+ YQ+ S DS+ DGIGDL+G
Sbjct: 1 MSWTIRLCALLLLASNSFAFFKIHNKSWWNNTIFYQVYPRSLYDSDADGIGDLKG----- 55
Query: 589 RYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFD 648
I K+ Y+ E G+ +WL+P Y P D GYDISN +V FGT+++F
Sbjct: 56 ----------ITSKLGYIAETGINAIWLSPIYPSPMVDFGYDISNFVDVDPTFGTLQNFK 105
Query: 649 ELV--------KLV------HSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVY 694
L+ K+V H+ K +K +N H +Y + Y++A D +
Sbjct: 106 VLLARAKELGLKVVLDLVPNHTSDKHVWFKKALQN--HLIYKNYYVWAKGKDNDG--KIP 161
Query: 695 LNPVYAGSGNQNW---RAGNQNRAESMEHRA-GMKILVEFVPNHSSNKHDWFIK---SAQ 747
N + GN W ++ +Q E+R + V N +++
Sbjct: 162 PNNWISIFGNSAWTYVQSLDQWYLHQFEYRQPDLNFRNPLVRAEMINVLKFWLDLGVDGF 221
Query: 748 KID--PYT--NYYVWKDGLNGKPGTPPNNWKHIN-------ITSREVMRSQKDVVQSFPL 796
+ID PY +YY+ + + GT P ++K++N I + ++ + V +
Sbjct: 222 RIDSAPYMFEDYYLRDEPRSFVEGTTPQDYKYLNHIYTADLIETYKLFGEWRRFVDWYAY 281
Query: 797 I-----LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNA 851
+++ EAY+ +L+ KYY + L N+E + A S+AKD + ++
Sbjct: 282 FNSQDQKLMVMEAYA-NLDNTMKYY-----EYNVLPFNFEFIINLNAQSSAKDFKRQIDM 335
Query: 852 YLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGM-ESP 910
+++++P G+ ++W++G H R+A+RY PD VD M ML+++LPG AVT+ GDE+GM +
Sbjct: 336 WMEAMPKGEVANWVLGNHDNPRVASRY-PDRVDQMTMLSMILPGMAVTYNGDEIGMVDKR 394
Query: 911 ILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPNYWTLN 969
+ + D +DP+ I G+ Y V RD R PFQW+ +NAGFS A S W+PV+ NY TLN
Sbjct: 395 DISWLDTKDPQACIAGQARYRNVSRDPERTPFQWDATKNAGFSTADSTWIPVNENYKTLN 454
Query: 970 AQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-ISTPNNYVFILTRTEGSTSVYLIIN 1028
EK SHY +YK L + A+ G YK I+T N+ V + R+ V L+IN
Sbjct: 455 LATEKAADESHYKIYKILAQMHRNEPALTEGSYKSITTNNDSVLGIIRSNNWRVVLLLIN 514
Query: 1029 LNSRTETVDLSDCIENG--GDVAIFTSSVNSGLASGKL 1064
++++ V+LS + G ++ + SS+ S + SG +
Sbjct: 515 FTNKSQIVNLS---QEGLPTNLVVKVSSLGSRVKSGSI 549
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195116947|ref|XP_002003012.1| GI24705 [Drosophila mojavensis] gi|193913587|gb|EDW12454.1| GI24705 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 167/558 (29%), Positives = 256/558 (45%), Gaps = 80/558 (14%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WW++ V YQI SFKDSN DGIGDL+G I K+ Y E G+ +W
Sbjct: 36 WWRHEVFYQIYPRSFKDSNGDGIGDLKG---------------ITSKLPYFVETGITAIW 80
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLY 675
L+P YS P D GYDIS++ ++ D+GT++DFDEL+ + G + I + S +
Sbjct: 81 LSPIYSSPMVDFGYDISDYRDIYPDYGTLDDFDELIATANQLGIKVILDFVPNHSSDK-- 138
Query: 676 CHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHS 735
H + A Y+ W G + E + +
Sbjct: 139 -HEWFKKSAARVSGYEDFYV-----------WEDGTEENGERKPPNNWVSVFSGSAWQWH 186
Query: 736 SNKHDWFIKSAQKIDPYTNY------------------------------YVWKDG-LNG 764
+ ++++ K P NY YV++D L
Sbjct: 187 EERKQFYLRQFTKGQPDLNYRNPAVLQAMDAVLTYWLKRGVSGFRIDAVNYVFEDKQLRD 246
Query: 765 KP----GTPPNNWKHINITSREVMRSQKDVVQSFPLIL------------MIITEAYSPS 808
+P + PN+ ++N ++Q + +L +++TE Y+
Sbjct: 247 EPLSGATSDPNSVDYLNHIYTRNQEENYGLIQHWRKLLDDYSEKYGGPARIMMTEGYAEL 306
Query: 809 LEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGG 868
+ + Y QG + N++ + + + S A+D + +L +P G ++W++G
Sbjct: 307 PQVMEFYEDENGVQGANFPFNFDFITELNSESTAQDFVFTIQRWLIYMPPGHSANWVMGN 366
Query: 869 HSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMES-PILRYEDQRDPEGYIFGK 927
H R+A+RY VDAMNML + LPG +T+ G+ELGME + +ED D GK
Sbjct: 367 HDNPRVASRYGAKSVDAMNMLLMTLPGIGITYNGEELGMEDYRDISFEDTVDQPACEAGK 426
Query: 928 DNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPNYWTLNAQAEKKTKPSHYSVYKD 986
DNY + RD R P QW+D++NAGFS A S WLPVHPNY LN ++ SHY VY+
Sbjct: 427 DNYKWISRDPERTPMQWSDEKNAGFSTADSTWLPVHPNYQELNLANQQLAPSSHYKVYQS 486
Query: 987 LTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDLSDCIENG 1045
L LR +S ++ G Y N VF L R G S+ +IN+++RT+ VD+SD I+
Sbjct: 487 LIKLR-SSKVLKDGTYTAQALNRRVFALKRELRGQPSLLTVINVSNRTQQVDVSDFIDLP 545
Query: 1046 GDVAIFTSSVNSGLASGK 1063
+ + VNS G+
Sbjct: 546 NRLTLLVVGVNSQYRVGE 563
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357620800|gb|EHJ72852.1| alpha amylase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 171/557 (30%), Positives = 267/557 (47%), Gaps = 79/557 (14%)
Query: 535 LLVLLSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT 594
+ L+ + + S+V + EWWK +IYQI SFKDSN DGIGDL G
Sbjct: 1 MRFLILSLAVFTSAVAASDTEWWKTALIYQIYPRSFKDSNGDGIGDLNG----------- 49
Query: 595 LGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLV 654
I EK+ YL + GV+ +WL+P Y P D GYDI+++ ++ ++GTM+DF L+
Sbjct: 50 ----ITEKLVYLNQTGVDAIWLSPIYLSPMYDFGYDITDYRKIAPEYGTMDDFKTLMTEA 105
Query: 655 HSKGKQKISQ---KQTKNRSHQLYCHMYM------YAICADKFAIHSVYLNPVYAGSGN- 704
G + I T N S + Y I AD GS +
Sbjct: 106 RRLGIRVIMDLVPNHTGNESEWFQKSIRREPGYEDYYIWADGIKTE---------GSNDT 156
Query: 705 ---QNWRAGNQNRAESMEHRAGMKILVEFVP-----NHSSNKHDWFIKSAQK-------- 748
NW + + A G L +FV N+ S + +K QK
Sbjct: 157 KPPSNWVSTFRKSAWEYNSVRGQYYLHKFVIGQPDLNYRSTRVQQEMKDVQKFWLDLGVS 216
Query: 749 ---IDPYTNYYVWK----------DGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFP 795
+D + Y + L+G P T P++++++N E + +VV +
Sbjct: 217 GFRVDAINHLYESNPANFGGRYPDEPLSGNPNTNPDDYEYLNHIHTENLNETYEVVYDWR 276
Query: 796 LIL-----------MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKD 844
+L +++TEAY+ L+ + +YYGT G+ + N+ + S+A+
Sbjct: 277 DLLDEYIELQGEYKIMMTEAYA-DLDSMMRYYGTSTRNGS-IPFNFSFLGDITKDSDARH 334
Query: 845 LENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDE 904
++ V++ ++ +PSG+ ++W+ G H +R+A R D VDAMNM+ LLLPG A+T+ G+E
Sbjct: 335 IKTVIDKWMTYMPSGRTANWVNGNHDQSRMANRQGVDRVDAMNMIALLLPGVAITYQGEE 394
Query: 905 LGMESPILRYEDQRDPEGYIFGKD-NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHP 963
+GM + +E+ +DP+ NY K RD +R PF W++ NAGFS K+WLPV
Sbjct: 395 IGMTDGEVSWEETKDPQACNTDDPVNYWKKSRDPNRTPFHWDNSTNAGFSTGKTWLPVAS 454
Query: 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR-TEGSTS 1022
NY +N + SHY YKDL +R + AV+ GD + V ++TR G
Sbjct: 455 NYHKVNLAEQINNTKSHYQFYKDLAAIRKMA-AVKYGDVDTRALSETVLVVTRLLPGEQG 513
Query: 1023 VYLIINLNSRTETVDLS 1039
V I+NL+ + VDL+
Sbjct: 514 VLGIVNLSDEDQYVDLT 530
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195159471|ref|XP_002020602.1| GL15372 [Drosophila persimilis] gi|194117552|gb|EDW39595.1| GL15372 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 172/563 (30%), Positives = 275/563 (48%), Gaps = 60/563 (10%)
Query: 543 SSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK 602
SS++ S + +WW++TV YQI SFKDSN DGIGDL G I K
Sbjct: 2 SSLVKSDAEDFIDWWQHTVFYQIYPRSFKDSNGDGIGDLPG---------------ITSK 46
Query: 603 IDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKI 662
+ YL E G+ WL+P + P D GYDIS++ ++ ++GTME F++L+ + G K+
Sbjct: 47 LQYLAETGITATWLSPIFQSPMVDFGYDISDYRQIQPEYGTMEHFEQLIDKAYELGI-KV 105
Query: 663 SQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ----NWRAGNQNRAESM 718
N S + A + + V+++P +G++ NW++ A
Sbjct: 106 ILDFVPNHSSDEHEWFKKSAAREPGYEDYYVWVDPKIDENGDRQPPNNWQSVFYGSAWEW 165
Query: 719 EHRAGMKILVEFVPNHSSNKHD--------------WFIKSAQ--KIDPYTNYY----VW 758
L +F + W K +ID + + +
Sbjct: 166 HEGRQQYYLHQFTKEQPDLNYRNPAVVQAMDDVILFWLNKGVAGFRIDAVNHMFEKESLE 225
Query: 759 KDGLNGKPGTPPNNWKHINITSR------EVMRSQKDVVQSF-------PLILMIITEAY 805
+ L+GK P + +I ++ E+++ + ++ F P +M +TEAY
Sbjct: 226 DEPLSGKTNDPLSYDYTTHIYTKDLPEVLEMVQHWRQLLDDFSSKHPEGPTRIM-MTEAY 284
Query: 806 SPSLEKVAKYYGTGD-TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSW 864
+ L +A YY + +G+ L N+ + S+A+D V +L +P G ++W
Sbjct: 285 A-GLTTLADYYEDRNGVRGSQLPFNFHFITDVNGDSDARDFVYNVEKWLIYMPRGHAANW 343
Query: 865 MVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMES-PILRYEDQRDPEGY 923
++G H R+A+R+ P VDAMNML + LPG AVT+ G+ELGME + +ED DP
Sbjct: 344 VMGNHDNPRVASRFGPSAVDAMNMLLMTLPGVAVTYNGEELGMEDYRDMPWEDTVDPPAR 403
Query: 924 IFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYS 982
G+ + V RD R PFQWN+ +AGFS+A K+WLPVHPNY LN +A+K SHY
Sbjct: 404 NVGEQLFRNVSRDPERTPFQWNNASHAGFSEASKTWLPVHPNYPELNLEAQKAAPKSHYK 463
Query: 983 VYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS-TSVYLIINLNSRTETVDLSDC 1041
VYK L LR S +R+G + I + +VF R+ + S+ +IN++ + + V+LS+
Sbjct: 464 VYKALIELR-KSAIMRLGRFTIEPISRWVFAFKRSFANFDSIITVINVSDKEQLVNLSEF 522
Query: 1042 IENGGDVAIFTSSVNSGLASGKL 1064
+ + + + V S G+
Sbjct: 523 LNQPKKLVVEVAGVESAYQPGQF 545
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91081577|ref|XP_975228.1| PREDICTED: similar to GA13362-PA [Tribolium castaneum] gi|270006189|gb|EFA02637.1| hypothetical protein TcasGA2_TC008358 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 175/576 (30%), Positives = 274/576 (47%), Gaps = 75/576 (13%)
Query: 533 VALLVLLSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLE 592
V L + S A++ + + +WW++ YQI SFKDSNNDGIGDL+G
Sbjct: 9 VFLFAICSAANAATLNKQVRSLDWWQHASFYQIYPRSFKDSNNDGIGDLQG--------- 59
Query: 593 LTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVK 652
IIEK+D+ + V+ +WL+P + P D GYDIS++ +V D+GTM+D EL++
Sbjct: 60 ------IIEKLDHFTDAVVDAVWLSPIFKSPQVDQGYDISDYRDVDPDYGTMDDLKELIQ 113
Query: 653 LVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ----NWR 708
H+K K K+ N + + +++ + V+ N GN+ NW
Sbjct: 114 KAHAK-KIKVILDFVPNHTSDKHQWFIDSVNGVEEYRDYYVWANAKVDDDGNRVPPNNWI 172
Query: 709 AGNQNRAESMEHRAGMKILVEFVPNHSS-NKHDWFIKSAQKIDPYTNYYVWKD-GLNGKP 766
+ +N A + L +F P N + + A K D T W D G++G
Sbjct: 173 SNFKNSAWTWSEERQQYYLHQFAPAQPDLNYRNPKVVQAMK-DVLT---FWLDQGVDGFR 228
Query: 767 --------------GTPPNNWKHINITSREVMRS--QKDVVQSFPLIL------------ 798
P +N N T E + KD+ ++F ++
Sbjct: 229 VDAIPHLVENEELLDEPKSNIPGYNDTDYEYLDHIYTKDLPETFDMVYQWRQLLDDYTNK 288
Query: 799 ------MIITEAYSPSLEKVAKYYGTGDTQ--GTHLSVNYEIMNKFGATSNAKDLENVVN 850
+ +TEAYS + YYG+ D G H + N+ ++ S A+D+ N VN
Sbjct: 289 NGGDSRIFMTEAYS-DINHTMLYYGSADGSQLGAHFTFNFYLITDININSTAQDIANTVN 347
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESP 910
+L ++P S+W++G H R+ATR+ D NML LLPG AVT+ G+E+G E+
Sbjct: 348 KWLDAIPEIYTSNWVLGNHDKHRVATRFGVANADGFNMLKSLLPGVAVTYNGEEIGQENG 407
Query: 911 ILRYEDQRDPEG---YIFGKDNYLKVCRDGSRVPFQWNDQENAGF-SKAKSWLPVHPNYW 966
+ YE+ +DP IF KV RD R P+QW+D NAGF + AK WLPV Y
Sbjct: 408 EVSYEEGQDPSARDPAIFD-----KVSRDFERTPYQWDDSTNAGFNTGAKPWLPVSEKYV 462
Query: 967 TLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLI 1026
N + EK SH+ VYK L LRA + GD + + Y ++ R+ +S+ L+
Sbjct: 463 ETNLKKEKADPVSHFKVYKALAQLRANPTLIS-GDVTVKAVDEYTVLIKRSLNGSSLALV 521
Query: 1027 INLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASG 1062
N+ + T TVD+++ + + + ++V+S +G
Sbjct: 522 FNVGNDTATVDIAEDVSKSNKIVL--TNVDSSRDTG 555
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| FB|FBgn0032382 | 583 | Mal-B2 "Maltase B2" [Drosophil | 0.246 | 0.451 | 0.397 | 7.3e-81 | |
| FB|FBgn0032381 | 584 | Mal-B1 "Maltase B1" [Drosophil | 0.244 | 0.445 | 0.344 | 1.6e-76 | |
| FB|FBgn0050360 | 601 | Mal-A6 "Maltase A6" [Drosophil | 0.234 | 0.415 | 0.353 | 1.4e-74 | |
| FB|FBgn0033296 | 599 | Mal-A7 "Maltase A7" [Drosophil | 0.224 | 0.398 | 0.370 | 2.3e-70 | |
| FB|FBgn0002571 | 574 | Mal-A3 "Maltase A3" [Drosophil | 0.261 | 0.486 | 0.328 | 6.1e-70 | |
| FB|FBgn0002570 | 577 | Mal-A1 "Maltase A1" [Drosophil | 0.246 | 0.454 | 0.327 | 1.4e-67 | |
| FB|FBgn0033297 | 588 | Mal-A8 "Maltase A8" [Drosophil | 0.285 | 0.517 | 0.313 | 1.8e-57 | |
| FB|FBgn0050359 | 630 | Mal-A5 "Maltase A5" [Drosophil | 0.224 | 0.379 | 0.342 | 5e-55 | |
| FB|FBgn0002569 | 567 | Mal-A2 "Maltase A2" [Drosophil | 0.210 | 0.395 | 0.302 | 5.7e-53 | |
| FB|FBgn0033294 | 579 | Mal-A4 "Maltase A4" [Drosophil | 0.224 | 0.412 | 0.338 | 3.8e-52 |
| FB|FBgn0032382 Mal-B2 "Maltase B2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 7.3e-81, Sum P(3) = 7.3e-81
Identities = 107/269 (39%), Positives = 159/269 (59%)
Query: 799 MIITEAYSPSLEKVAKYY-GTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
+++TEAY+ L ++A YY + +G+HL N+ + S+A+D V +L +P
Sbjct: 297 IMMTEAYA-GLTQLADYYEDSNGVRGSHLPFNFHFITDVKGDSDARDYVYNVEKWLIYMP 355
Query: 858 SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGM-ESPILRYED 916
G ++W++G H R+A+R+ P VDAMNML L LPG AVT+ G+ELGM + L +E+
Sbjct: 356 RGHAANWVMGNHDNPRVASRFGPASVDAMNMLLLTLPGVAVTYNGEELGMVDYRELSWEE 415
Query: 917 QRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKK 975
DP G+ Y +V RD R PFQWN++ NAGFS A K+WLPVHPNY LN +A+K
Sbjct: 416 TVDPPARNVGEKLYQEVSRDPVRTPFQWNNETNAGFSTAAKTWLPVHPNYLELNLEAQKV 475
Query: 976 TKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS-TSVYLIINLNSRTE 1034
SHY VYKDL LR S +R+G + I +VF R+ + S+ +IN++ + +
Sbjct: 476 ANRSHYQVYKDLLELRK-SAIMRVGRFNIEPLTRWVFAFKRSYPNFESIITVINVSDKEQ 534
Query: 1035 TVDLSDCIENGGDVAIFTSSVNSGLASGK 1063
VDLS+ + + + S V+S G+
Sbjct: 535 LVDLSEFLSQPKKLVVEVSGVDSKYQPGQ 563
|
|
| FB|FBgn0032381 Mal-B1 "Maltase B1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 92/267 (34%), Positives = 151/267 (56%)
Query: 795 PLILMIITEAYSPSLEKVAKYY-GTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL 853
PL +M+ TE Y+ S+ ++ +YY + QG N++ + + A S A D ++ +L
Sbjct: 292 PLRIMM-TEGYA-SVSQLMEYYEDSNGVQGPQFPFNFDFITELNANSTAADFVFYISRWL 349
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGM-ESPIL 912
+P G ++W++G H R+A+R+ VDAMNML + LPG +T+ G+ELGM + +
Sbjct: 350 IYMPHGHVANWVMGNHDNPRVASRFGEKSVDAMNMLLMTLPGIGITYNGEELGMTDYRDI 409
Query: 913 RYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQ 971
+ D D G DNY + RD R P QW+ NAGFS A ++WLPV+PNY LN +
Sbjct: 410 SWSDTVDQPACEAGIDNYKTISRDPERTPMQWSSDVNAGFSSADRTWLPVNPNYKELNLR 469
Query: 972 AEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLN 1030
+++ + SHY +Y+ L LR ++ G + N VF R + ++ I+N++
Sbjct: 470 NQQQARRSHYKIYQSLLKLRQLP-VLKNGSFVPEVVNRRVFAFKRELKNEHTLLTIVNVS 528
Query: 1031 SRTETVDLSDCIENGGDVAIFTSSVNS 1057
+RTE VD++D IE +++ + V+S
Sbjct: 529 NRTELVDIADFIEQPNRLSVLVAGVDS 555
|
|
| FB|FBgn0050360 Mal-A6 "Maltase A6" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 92/260 (35%), Positives = 148/260 (56%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIM-----NKFGATSNAKDLENVVNAYL 853
+I+ E YS L+ V ++YG T+G + N++ + +K NA +++++L
Sbjct: 311 VIMVETYS-GLDYVMQFYGNRTTKGAQMPFNFQFIIGGNGDKNNTQLNATGFVKIISSWL 369
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILR 913
+P+G+ ++W++G H R+ +RY + +D MNML + LPG ++T+ G+ELGM +
Sbjct: 370 SQMPAGQTANWVMGNHDQRRVGSRYGENRIDLMNMLQMFLPGVSITYQGEELGMTDLDIS 429
Query: 914 YEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS-KAKSWLPVHPNYWTLNAQA 972
+ED RDP D Y + RD +R PFQW+D+ NAGFS A +WLP++PNY T+NA+A
Sbjct: 430 WEDSRDPAACNSNSDIYEQFTRDPARTPFQWSDEANAGFSTNATTWLPINPNYVTVNAKA 489
Query: 973 EKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR-TEGSTSVYLIIN-LN 1030
E T PSH S+YK L LR S ++ G + + + V + R G S L+ N L+
Sbjct: 490 ENSTSPSHLSLYKQLVDLRK-SKTLQFGATRYANVGDNVVAIRRYLSGEPSYVLVANVLD 548
Query: 1031 SRTETVDLSDCIENGGDVAI 1050
+ +D++ I G I
Sbjct: 549 TSVSGIDVASAIYATGSYKI 568
|
|
| FB|FBgn0033296 Mal-A7 "Maltase A7" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 2.3e-70, Sum P(3) = 2.3e-70
Identities = 90/243 (37%), Positives = 138/243 (56%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS-NAKDLENVVNAYLKSLP 857
+++ E Y+P + ++YG T G HL N+ ++ + +A ++ V+ +L +LP
Sbjct: 306 VLLIETYAPPAYTM-QFYGNRSTAGAHLPFNFNLITVLASDGVSAGSIKTAVDNWLDNLP 364
Query: 858 SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQ 917
+G+ ++W++G H R A+RY DAMNML ++LPG +VT+ G+ELGM + +ED
Sbjct: 365 AGRTANWVIGNHDQRRAASRYGTANADAMNMLVMVLPGASVTYQGEELGMTDGEISWEDT 424
Query: 918 RDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKT 976
+DP D Y + RD SR PFQW + NAGFS A K+WLP+ +Y TLN + E
Sbjct: 425 QDPAACNSNSDIYEQFTRDPSRTPFQWTNGTNAGFSTASKTWLPLAADYQTLNVETEAAA 484
Query: 977 KPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR-TEGSTSVYLIINLNSRTET 1035
+ SH +YK L LR +S ++ G K VF++ R GS S+ + N S+ T
Sbjct: 485 QRSHLKIYKALVELRKSSLPLQNGSTKYGVVGENVFVVKRYISGSASIIYVANFASKGVT 544
Query: 1036 VDL 1038
VDL
Sbjct: 545 VDL 547
|
|
| FB|FBgn0002571 Mal-A3 "Maltase A3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 6.1e-70, Sum P(3) = 6.1e-70
Identities = 97/295 (32%), Positives = 163/295 (55%)
Query: 758 WKDGLNGKPGTPPNNW---KHINITSR----EVMRSQKDVVQSFPLIL-----MIITEAY 805
W D + + P ++ +HI T + E++ + +DV++ L +++TEAY
Sbjct: 236 WPDEPRNEAVSDPEDYTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAY 295
Query: 806 SPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWM 865
SP LE + +YYG G G+ + N+E++ K +S+A +++ +L ++P G+ ++W+
Sbjct: 296 SP-LEVLMQYYGNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQVANWV 354
Query: 866 VGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIF 925
G H +RI +R D +DA NM+ L LPG +VT+ G+E+GM + +ED DP+
Sbjct: 355 FGNHDQSRIGSRLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVWISWEDTVDPQACQS 414
Query: 926 GKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-SWLPVHPNYWTLNAQAEKKTKPSHYSVY 984
+ + ++ RD R PFQW+D+ NAGFS A +WLPV NY +N + E+ SH +VY
Sbjct: 415 NEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTWLPVASNYKLVNVKKERGIALSHLNVY 474
Query: 985 KDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDL 1038
K L LR ++ GD ++ V R+ G S +IN+N E+++L
Sbjct: 475 KQLRALR-DEPTLKQGDVSVTAIGPNVLAFKRSLAGYKSYITLININDDVESINL 528
|
|
| FB|FBgn0002570 Mal-A1 "Maltase A1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.4e-67, Sum P(3) = 1.4e-67
Identities = 87/266 (32%), Positives = 146/266 (54%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPS 858
+++TEAY+ S E + YYG G G+H+ N++ + S A + + ++ ++P
Sbjct: 293 LLMTEAYT-SFENIMTYYGNGVRNGSHIPFNFDFLTSINNASKAGEYVEHIKKWMDAMPE 351
Query: 859 GKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQR 918
G +++W++G H R+A+R+ D +N+L LPG AVT+ G+ELGM + +ED
Sbjct: 352 GVYANWVLGNHDNKRVASRFGVQRTDLINILLQTLPGHAVTYNGEELGMTDVWISWEDTV 411
Query: 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-SWLPVHPNYWTLNAQAEKKTK 977
DP DNY RD +R P+QW+ AGF+ A +WLPV +Y T NA + +
Sbjct: 412 DPNACNSDPDNYYARSRDPARSPYQWDASSKAGFTSADHTWLPVADDYKTNNALQQLRAP 471
Query: 978 PSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLII-NLNSRTETV 1036
SH ++K L +R + R G+ I ++ V I +R + + +Y+I+ NL S ++T+
Sbjct: 472 RSHLQIFKKLVRVRKEP-SFRQGELNIQAIDDDVIIYSRQKTGSDLYVIVLNLGSTSKTL 530
Query: 1037 DLSDCIENGGDVAIFTSSVNSGLASG 1062
DL+ E G + T+S++S G
Sbjct: 531 DLTKYYELGTQAEVITTSLSSQYIDG 556
|
|
| FB|FBgn0033297 Mal-A8 "Maltase A8" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 99/316 (31%), Positives = 165/316 (52%)
Query: 727 LVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRS 786
L E VP+ D + A + D Y+ + +P T ++ R V+
Sbjct: 237 LFEVVPDSDGQFPDEVVSGATE-DKEDRDYLTTTYIENQPETIDMVYQW-----RTVLDD 290
Query: 787 QKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS-NAKDL 845
K + +L+I E YSP+ + ++YG T+G HL N+ ++ + +A ++
Sbjct: 291 HKRIFGGNSSVLLI--ETYSPAWFTM-QFYGNRSTEGAHLPFNFNLITVMEQSGLSASNV 347
Query: 846 ENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDEL 905
+ ++ +LK++P+G+ +W++G H R A+RY + +D MNML ++LPG +VT+ G+E+
Sbjct: 348 QEAIDLWLKNMPAGRTPNWVLGNHDKRRAASRYGKENIDGMNMLVMILPGVSVTYQGEEI 407
Query: 906 GMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPN 964
GM + +ED DP G + Y + RD R PFQW NAGF+ S WLP+ +
Sbjct: 408 GMTDGEISWEDTVDPWGCNSNPNIYEQYTRDPERTPFQWTGGTNAGFTNGSSTWLPLAAD 467
Query: 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT-EGSTSV 1023
Y T+N + E SH +YK L LR +S ++ G K + +F++ R+ S ++
Sbjct: 468 YATINVEKELSDDHSHLKIYKALVALRKSSKTLQNGSTKYQALSEDIFVVQRSLTKSATI 527
Query: 1024 YLIINLNSRTETVDLS 1039
L+IN S +TVDLS
Sbjct: 528 VLVINFGSVAKTVDLS 543
|
|
| FB|FBgn0050359 Mal-A5 "Maltase A5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 5.0e-55, Sum P(2) = 5.0e-55
Identities = 83/242 (34%), Positives = 139/242 (57%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPS 858
+++ E YSP ++ V +YYG +G L N+ ++++ +SNA E V +L+ +P
Sbjct: 310 ILMAETYSP-IDIVMQYYGNATAEGAQLPFNFLLISELSNSSNAHAYEGTVLKWLQHMPK 368
Query: 859 GKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQR 918
G+ ++W++G H R+ +R D VD +NMLT LPG +VT+ G+ELGM + + ++D
Sbjct: 369 GRTANWVLGNHDQPRVGSRLGRDRVDMLNMLTATLPGASVTYQGEELGMTNVWISWKDTV 428
Query: 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTK 977
DP Y + RD R PFQW D ++AGFS A K+WLP+ +Y +N + E++
Sbjct: 429 DPSACNTNPSIYEQYSRDPERTPFQWTDAQDAGFSNASKTWLPIAVDYKEVNVEQERQKP 488
Query: 978 PSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYL-IINLNSRTETV 1036
SH +V+K L LR S ++ G+ ++ ++ V + R S YL ++N+ ET+
Sbjct: 489 LSHLNVFKQLWQLRKQSQTLKRGETEVKALSDAVLAVKRYLERDSTYLTLLNIYDGVETI 548
Query: 1037 DL 1038
+L
Sbjct: 549 NL 550
|
|
| FB|FBgn0002569 Mal-A2 "Maltase A2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 5.7e-53, Sum P(3) = 5.7e-53
Identities = 74/245 (30%), Positives = 127/245 (51%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSL-P 857
+++ EAYS S+E ++ Y+G QGT L +N+++M G S AKD+ ++ ++ ++
Sbjct: 294 VLLAEAYS-SVETLSAYFGNSTHQGTQLPMNFQLMYLSGY-STAKDVVGSIDYWMNTMWK 351
Query: 858 SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQ 917
+ ++W+VG H R+A R VD +N++ LPG +VT+ G+E+GM + + E
Sbjct: 352 EHQTANWVVGNHDTNRVADRMGAHKVDLLNVIVNALPGASVTYYGEEIGMSN--VDVECT 409
Query: 918 RDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPNYWTLNAQAEKKT 976
D +D RDG R P QW +NA FS +S WLP+ P Y N Q E+
Sbjct: 410 GDS-----CED------RDGERTPMQWTAGKNADFSDGESTWLPLSPEYQRYNVQTERGV 458
Query: 977 KPSHYSVYKDLTTLRATSGAVRM---GDYKISTPNNYVFILTRTEGSTSVY-LIINLNSR 1032
S +++K L L+++S + G + V + RT + Y +++N+ +
Sbjct: 459 SRSSLNIFKGLQELKSSSAFLAFKEDGGFSYEAVTEQVLQIIRTNKISEEYRILVNMGNG 518
Query: 1033 TETVD 1037
E +D
Sbjct: 519 MEILD 523
|
|
| FB|FBgn0033294 Mal-A4 "Maltase A4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 83/245 (33%), Positives = 133/245 (54%)
Query: 797 ILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSL 856
ILM+ E +SP +E V YYG G + N+++++ S+A E ++N +L +
Sbjct: 291 ILMV--ETWSP-IEIVMHYYGNETADGAQIPFNFQLISNLHYDSDAYHYEYLINNWLNLM 347
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYED 916
P GK ++W++G H R+ +R+ D VD N+L L LPG ++T+ G+ELGM + +ED
Sbjct: 348 PEGKSANWVIGNHDKNRVGSRFGADRVDLFNILLLTLPGCSITYQGEELGMLDGYVSWED 407
Query: 917 QRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS-WLPVHPNYWTLNAQAEKK 975
DP+ + NY+ RD +R P W+D+ AGF+ S WLPV +Y N + E+
Sbjct: 408 TVDPQACNGYEANYMDNSRDPARTPMHWSDETMAGFTTGNSTWLPVSTDYRQRNVKTERG 467
Query: 976 TKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYL-IINLNSRTE 1034
SH +V+K L LR ++ G ++ +NYV + R VY+ + N+ E
Sbjct: 468 VSLSHLNVFKRLQQLRQEP-SIEEGSAEVKAVSNYVLAVKRHLSGDFVYISLFNIFDSIE 526
Query: 1035 TVDLS 1039
V+LS
Sbjct: 527 NVNLS 531
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1065 | |||
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 1e-72 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 7e-42 | |
| cd11331 | 450 | cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly | 6e-41 | |
| COG0366 | 505 | COG0366, AmyA, Glycosidases [Carbohydrate transpor | 2e-40 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 3e-38 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 1e-37 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 4e-34 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 5e-34 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 3e-31 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 6e-31 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 2e-30 | |
| cd11331 | 450 | cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly | 3e-30 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 4e-26 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 9e-26 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 2e-25 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 2e-25 | |
| smart00642 | 166 | smart00642, Aamy, Alpha-amylase domain | 5e-25 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 7e-24 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 3e-22 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 4e-22 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 1e-21 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 3e-21 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 1e-19 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 1e-19 | |
| pfam00128 | 314 | pfam00128, Alpha-amylase, Alpha amylase, catalytic | 4e-19 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 6e-17 | |
| pfam00128 | 314 | pfam00128, Alpha-amylase, Alpha amylase, catalytic | 6e-17 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 1e-16 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 2e-16 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 2e-15 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 9e-15 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 1e-14 | |
| cd11331 | 450 | cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly | 2e-14 | |
| cd11320 | 389 | cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase | 8e-14 | |
| cd11329 | 477 | cd11329, AmyAc_maltase-like, Alpha amylase catalyt | 7e-13 | |
| cd11331 | 450 | cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly | 2e-12 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 6e-12 | |
| cd11324 | 536 | cd11324, AmyAc_Amylosucrase, Alpha amylase catalyt | 8e-12 | |
| cd11339 | 344 | cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal | 1e-11 | |
| cd11352 | 443 | cd11352, AmyAc_5, Alpha amylase catalytic domain f | 1e-11 | |
| cd11340 | 407 | cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal | 1e-11 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 3e-11 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 5e-11 | |
| cd11328 | 470 | cd11328, AmyAc_maltase, Alpha amylase catalytic do | 1e-10 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 1e-10 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 9e-10 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 1e-09 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 1e-09 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 3e-09 | |
| cd11329 | 477 | cd11329, AmyAc_maltase-like, Alpha amylase catalyt | 3e-09 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 4e-09 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 4e-09 | |
| cd11313 | 336 | cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly | 4e-09 | |
| cd11331 | 450 | cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly | 6e-09 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 8e-09 | |
| cd11359 | 456 | cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom | 1e-08 | |
| cd11330 | 472 | cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d | 1e-08 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 1e-08 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 3e-08 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 8e-08 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 1e-07 | |
| PRK10933 | 551 | PRK10933, PRK10933, trehalose-6-phosphate hydrolas | 1e-07 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 1e-07 | |
| TIGR02456 | 539 | TIGR02456, treS_nterm, trehalose synthase | 7e-07 | |
| TIGR02403 | 543 | TIGR02403, trehalose_treC, alpha,alpha-phosphotreh | 1e-06 | |
| cd11350 | 390 | cd11350, AmyAc_4, Alpha amylase catalytic domain f | 2e-06 | |
| COG3280 | 889 | COG3280, TreY, Maltooligosyl trehalose synthase [C | 2e-06 | |
| PRK09505 | 683 | PRK09505, malS, alpha-amylase; Reviewed | 5e-06 | |
| cd11345 | 326 | cd11345, AmyAc_SLC3A2, Alpha amylase catalytic dom | 5e-06 | |
| TIGR02401 | 825 | TIGR02401, trehalose_TreY, malto-oligosyltrehalose | 6e-06 | |
| cd11337 | 328 | cd11337, AmyAc_CMD_like, Alpha amylase catalytic d | 8e-06 | |
| cd11319 | 375 | cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d | 1e-05 | |
| cd00551 | 260 | cd00551, AmyAc_family, Alpha amylase catalytic dom | 2e-05 | |
| cd11336 | 660 | cd11336, AmyAc_MTSase, Alpha amylase catalytic dom | 2e-05 | |
| cd11333 | 428 | cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca | 5e-05 | |
| PRK14511 | 879 | PRK14511, PRK14511, maltooligosyl trehalose syntha | 5e-05 | |
| cd11316 | 403 | cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic | 6e-05 | |
| PRK10785 | 598 | PRK10785, PRK10785, maltodextrin glucosidase; Prov | 6e-05 | |
| cd11332 | 481 | cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti | 7e-05 | |
| cd11338 | 389 | cd11338, AmyAc_CMD, Alpha amylase catalytic domain | 7e-05 | |
| cd11345 | 326 | cd11345, AmyAc_SLC3A2, Alpha amylase catalytic dom | 7e-05 | |
| cd11353 | 366 | cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase cat | 9e-05 | |
| COG0296 | 628 | COG0296, GlgB, 1,4-alpha-glucan branching enzyme [ | 1e-04 | |
| cd11348 | 429 | cd11348, AmyAc_2, Alpha amylase catalytic domain f | 8e-04 | |
| cd11334 | 447 | cd11334, AmyAc_TreS, Alpha amylase catalytic domai | 0.001 | |
| cd11344 | 355 | cd11344, AmyAc_GlgE_like, Alpha amylase catalytic | 0.001 | |
| PRK14507 | 1693 | PRK14507, PRK14507, putative bifunctional 4-alpha- | 0.002 | |
| cd11329 | 477 | cd11329, AmyAc_maltase-like, Alpha amylase catalyt | 0.003 | |
| cd11354 | 357 | cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt | 0.003 | |
| cd11325 | 436 | cd11325, AmyAc_GTHase, Alpha amylase catalytic dom | 0.003 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-72
Identities = 97/224 (43%), Positives = 141/224 (62%), Gaps = 5/224 (2%)
Query: 781 REVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS 840
REV+ ++M TEAYS SL+ KYYG T G H N+E++ S
Sbjct: 251 REVLDEYAKENNGDTRVMM--TEAYS-SLDNTMKYYGNETTYGAHFPFNFELITNLNKNS 307
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTF 900
NA D +++++ +L ++P G+ ++W++G H R+A+R+ + VD MNML++LLPG AVT+
Sbjct: 308 NATDFKDLIDKWLDNMPEGQTANWVLGNHDNPRVASRFGEERVDGMNMLSMLLPGVAVTY 367
Query: 901 AGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWL 959
G+E+GME + +ED DP G +NY RD +R PFQW+D +NAGFS A K+WL
Sbjct: 368 YGEEIGMEDTTISWEDTVDPPACNAGPENYEAYSRDPARTPFQWDDSKNAGFSTANKTWL 427
Query: 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK 1003
PV+PNY TLN +A+KK SHY++YK L LR + +R GD +
Sbjct: 428 PVNPNYKTLNLEAQKKDPRSHYNIYKKLAQLRKSPTFLR-GDLE 470
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 7e-42
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK 860
ITE Y ++ +YYGT Q N+ +++ GA + + +V +++ ++P GK
Sbjct: 266 ITEVYDD-IDTTMRYYGTSFKQEADFPFNFYLLD-LGANLSGNSINELVESWMSNMPEGK 323
Query: 861 WSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDP 920
W +W++G H +RIA+R P V AMNML L LPGT T+ G+E+GME + D+
Sbjct: 324 WPNWVLGNHDNSRIASRLGPQYVRAMNMLLLTLPGTPTTYYGEEIGMED-VDISVDKE-- 380
Query: 921 EGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPS 979
KD Y RD R P QWN+ NAGFS A K+WLPV+ +Y T+N + +K S
Sbjct: 381 ------KDPYTFESRDPERTPMQWNNSNNAGFSDANKTWLPVNSDYKTVNVEVQKTDPTS 434
Query: 980 HYSVYKDLTTLRATS 994
++Y++L LR++
Sbjct: 435 MLNLYRELLLLRSSE 449
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 6e-41
Identities = 73/221 (33%), Positives = 105/221 (47%), Gaps = 11/221 (4%)
Query: 782 EVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSN 841
E++R + VV F ++I E Y P L+++ YYG G G HL N+ +++ +
Sbjct: 240 EIVREMRRVVDEFG-DRVLIGEIYLP-LDRLVAYYGAG-RDGLHLPFNFHLIS---LPWD 293
Query: 842 AKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFA 901
A L + Y +LP+G W +W++G H RIA+R P ML L L GT +
Sbjct: 294 AAALARAIEEYEAALPAGAWPNWVLGNHDQPRIASRVGPAQARVAAMLLLTLRGTPTLYY 353
Query: 902 GDELGMESPILRYEDQRDPEGYIFGKDNYLKV-CRDGSRVPFQWNDQENAGFSKAKSWLP 960
GDELGME + E +DP + RD R P W+ NAGFS A WLP
Sbjct: 354 GDELGMEDVPIPPERVQDP----AELNQPGGGLGRDPERTPMPWDASPNAGFSAADPWLP 409
Query: 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD 1001
+ P+ N ++ S S+Y+ L LR A+ G
Sbjct: 410 LSPDARQRNVATQEADPGSMLSLYRRLLALRRAHPALSAGS 450
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450 |
| >gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-40
Identities = 114/528 (21%), Positives = 201/528 (38%), Gaps = 85/528 (16%)
Query: 560 TVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVET 613
VIYQI F DSN DG GDL+G I EK+DYLKELGV+
Sbjct: 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKG---------------ITEKLDYLKELGVDA 45
Query: 614 LWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVK--------------LVHSKGK 659
+WL+P + P D GYD+S++T+V FGT EDF ELV+ H+ +
Sbjct: 46 IWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDE 105
Query: 660 QKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESME 719
++ ++ + Y++ + + + G W GN E
Sbjct: 106 HPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSV----FGGDAWTWGNTG-----E 156
Query: 720 HRAGMKILVEFVPNHSSNK-HDWFIKSAQK-----IDPY---TNYYVWKDGLNGKPGTPP 770
+ + + N + + + + + +D + ++ KD
Sbjct: 157 YYLHLFSSEQPDLNWENPEVREELLDVVKFWLDKGVDGFRLDAAKHISKDFGLPPSEENL 216
Query: 771 NNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT------QGT 824
+ I E +R + V + + + EA E A + +
Sbjct: 217 TFLEEI----HEYLREENPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFS 272
Query: 825 HLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPD-- 881
H+ +++E + +A++L+ ++ + ++ W++ + H R+ +R+ D
Sbjct: 273 HVGLDFEALAPL----DAEELKEILADWPLAVNLNDGWNNLFLSNHDQPRLLSRFGDDVG 328
Query: 882 ----LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDG 937
+ L LLPGT + GDELG+ + D RDG
Sbjct: 329 GRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLS----RDG 384
Query: 938 SRVPFQWNDQ-ENAGFSKAKSWLPVHPNYWTLNAQAEKKT---KPSHYSVYKDLTTLRAT 993
R P W++ NAGF+ K WL V+PN + S ++ Y+ L LR
Sbjct: 385 CRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQ 444
Query: 994 SGAVRMGDYK---ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDL 1038
A+ ++ + + R G ++ ++ NL+ + V+L
Sbjct: 445 HSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEEEQEVEL 492
|
Length = 505 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-38
Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 15/101 (14%)
Query: 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
K V+YQI SFKDSN DGIGDL G II K+DYLK+LGV+ +WL+
Sbjct: 1 KEAVVYQIYPRSFKDSNGDGIGDLPG---------------IISKLDYLKDLGVDAIWLS 45
Query: 618 PFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P Y P D GYDIS++ + +FGTMEDFDEL+K H +G
Sbjct: 46 PIYPSPQVDNGYDISDYRAIDPEFGTMEDFDELIKEAHKRG 86
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-37
Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 15/105 (14%)
Query: 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVET 613
K+WW+N V YQI SFKDS+ DGIGDL+G I EK+DY K++G++
Sbjct: 2 KDWWENAVFYQIYPRSFKDSDGDGIGDLKG---------------ITEKLDYFKDIGIDA 46
Query: 614 LWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WL+P + P D GYDIS+ T++ FGTMEDF+EL+ G
Sbjct: 47 IWLSPIFKSPMVDFGYDISDFTDIDPIFGTMEDFEELIAEAKKLG 91
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-34
Identities = 48/104 (46%), Positives = 61/104 (58%), Gaps = 15/104 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
WW+ VIYQI SF DSN DGIGDL G I EK+DY+ LGV+ +
Sbjct: 1 PWWRGAVIYQIYPRSFLDSNGDGIGDLPG---------------ITEKLDYIASLGVDAI 45
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
WL+PF+ P D GYD+S++ V FGT++DFD LV H+ G
Sbjct: 46 WLSPFFKSPMKDFGYDVSDYCAVDPLFGTLDDFDRLVARAHALG 89
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-34
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 15/103 (14%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
W+KN VIYQ+ V +F DSN DGIGD RG + EK+DYL+ LGV +W
Sbjct: 1 WYKNAVIYQLDVRTFMDSNGDGIGDFRG---------------LTEKLDYLQWLGVTAIW 45
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L PFY P D GYDI+++ V GT+ DF E ++ H +G
Sbjct: 46 LLPFYPSPLRDDGYDIADYYGVDPRLGTLGDFVEFLREAHERG 88
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-31
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 15/103 (14%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WW+ +VIYQI SFKDSN DG GDL+G I EK+DYLK LGV+T+W
Sbjct: 2 WWQTSVIYQIYPRSFKDSNGDGNGDLKG---------------IREKLDYLKYLGVKTVW 46
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L+P Y P D GYD+S+ T++ FGTMEDF+ L+ +H +G
Sbjct: 47 LSPIYKSPMKDFGYDVSDFTDIDPMFGTMEDFERLLAAMHDRG 89
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-31
Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 15/103 (14%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WW+ VIYQI SF DS DG GDLRG IIEK+DYLK+LGV+ +W
Sbjct: 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRG---------------IIEKLDYLKKLGVDYIW 45
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L PFY P D GYD+S++ + FGTM DF+ELV +
Sbjct: 46 LNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRN 88
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-30
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 15/104 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
WW++ V+YQ+ SF D+N DGIGDL G I ++ YL LGV+ +
Sbjct: 1 PWWRDAVVYQVYPRSFADANGDGIGDLAG---------------IRARLPYLAALGVDAI 45
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
WL+PFY P D GYD++++ +V FGT+ DFD LV H G
Sbjct: 46 WLSPFYPSPMADGGYDVADYRDVDPLFGTLADFDALVAAAHELG 89
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-30
Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 15/104 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
WW+ VIYQI SF+DSN DG+GDLRG II ++DYL +LGV+ +
Sbjct: 1 LWWQTGVIYQIYPRSFQDSNGDGVGDLRG---------------IISRLDYLSDLGVDAV 45
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
WL+P Y P D GYD+S++ + FGT+EDFD LV H++G
Sbjct: 46 WLSPIYPSPMADFGYDVSDYCGIDPLFGTLEDFDRLVAEAHARG 89
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-26
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 15/104 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
W+K+ V Y++ V SF DSN DGIGD G + K+DYLK LGV+ L
Sbjct: 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPG---------------LTSKLDYLKWLGVDAL 45
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
WL PF+ P D GYD+S++ + +FGT++DF + V H++G
Sbjct: 46 WLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARG 89
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 9e-26
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+M + EA E+ KY G HL ++Y K+ + ++L+ +++
Sbjct: 244 IMTVGEAPGVDPEEALKYVGPDRGELSMVFNFEHLDLDYGPGGKWKPKPWDLEELKKILS 303
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDE 904
+ K+L W++ + H R +R+ D + L L L GT + G+E
Sbjct: 304 KWQKALQGDGWNALFLENHDQPRSVSRFGNDGEYRVESAKMLATLLLTLRGTPFIYQGEE 363
Query: 905 LGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964
+GM + RD +R P QW+D NAGFS K WLPV+PN
Sbjct: 364 IGMTNS------------------------RDNARTPMQWDDSPNAGFSTGKPWLPVNPN 399
Query: 965 YWTLNAQAEKKTKPSHYSVYKDLTTLR 991
Y +N +A+ S + YK L LR
Sbjct: 400 YKEINVEAQLADPDSVLNFYKKLIALR 426
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-25
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 16/98 (16%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFY 620
V Y+I V SF DS+ DGIGDL G + EK+DYL +LGV +WL P +
Sbjct: 2 VFYEIFVRSFYDSDGDGIGDLNG---------------LTEKLDYLNDLGVNGIWLMPIF 46
Query: 621 SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P+ GYD++++ + D+GTMEDF+ L+ H +G
Sbjct: 47 PSPS-YHGYDVTDYYAIEPDYGTMEDFERLIAEAHKRG 83
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 15/103 (14%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
WW+N VIYQI SF+D+ G GDLRG + +++DYL++LGV+ +W
Sbjct: 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRG---------------VTQRLDYLQKLGVDAIW 51
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LTPFY P D GYD++N+T + +GT++DFDELV S+G
Sbjct: 52 LTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRG 94
|
Length = 551 |
| >gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 18/98 (18%)
Query: 564 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP 623
QI F D N DG GDL+G IIEK+DYLK+LGV +WL+P + P
Sbjct: 1 QIYPDRFADGNGDGGGDLQG---------------IIEKLDYLKDLGVTAIWLSPIFESP 45
Query: 624 NG---DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
G GYDIS++ ++ FGTMEDF ELV H++G
Sbjct: 46 QGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARG 83
|
Length = 166 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 806 SPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWM 865
LE +A+Y T H++ +++++ G +A + + + A+ P G W W
Sbjct: 269 DDPLEVMAEY--TSGGDRLHMAYSFDLL---GRPFSAAVVRDALEAFEAEAPDG-WPCWA 322
Query: 866 VGGHSITRIATRYSPDLVD---AMNMLTLL--LPGTAVTFAGDELGMESPILRYEDQRDP 920
H + R +R++ D A +L LL L G+ + G+ELG+ L +E+ +DP
Sbjct: 323 FSNHDVPRAVSRWAGGADDPALARLLLALLLSLRGSVCLYQGEELGLPEAELPFEELQDP 382
Query: 921 EG-----YIFGKDNYLKVCRDGSRVPFQWN-DQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
G G RDG R P W D +AGFS AK WLPV P + L ++
Sbjct: 383 YGITFWPEFKG--------RDGCRTPMPWQADAPHAGFSTAKPWLPVPPEHLALAVDVQE 434
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGD 1001
K S + Y+ R A+R G
Sbjct: 435 KDPGSVLNFYRRFLAWRKAQPALRTGT 461
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-22
Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 21/104 (20%)
Query: 561 VIYQILVPSFKDSN---NDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
VIYQ+ F D + DG GDL+G II+K+DYLK+LGV +WLT
Sbjct: 1 VIYQLFPDRFTDGDSSGGDGGGDLKG---------------IIDKLDYLKDLGVTAIWLT 45
Query: 618 PFYSGPNGDIGYDIS---NHTEVGKDFGTMEDFDELVKLVHSKG 658
P + P D ++ E+ GT EDF ELVK H +G
Sbjct: 46 PIFESPEYDGYDKDDGYLDYYEIDPRLGTEEDFKELVKAAHKRG 89
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-22
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+L FWL +GVDGF +D+V L+E E F +EP E PD D DHIYT DQPETY+
Sbjct: 187 VLRFWLDKGVDGFRIDAVPHLFEDEDFLDEPYSDEPGADPD-DYDYLDHIYTKDQPETYD 245
Query: 404 MLYKWRTLVEKFGNQ 418
++Y+WR +++++ +
Sbjct: 246 LVYEWREVLDEYAKE 260
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-21
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGT--PPNNW 773
+ G+K++++FVPNHSS++H+WF KS ++ +PY +YYVW DG N GT PPNNW
Sbjct: 88 KKLGLKVILDFVPNHSSDEHEWFQKSVKRDEPYKDYYVWHDGKNNDNGTRVPPNNW 143
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-21
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFY 620
V Y+I SF DSN DGIGDL+G II K+DY+K LG +WL P +
Sbjct: 1 VFYEIYPQSFYDSNGDGIGDLQG---------------IISKLDYIKSLGCNAIWLNPCF 45
Query: 621 SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P D GYD+ ++ +V +GT ED L H +G
Sbjct: 46 DSPFKDAGYDVRDYYKVAPRYGTNEDLVRLFDEAHKRG 83
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-19
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 690 IHSVYLNPVY------AGSGNQNWRA-----GNQNRAESM---EHRAGMKILVEFVPNHS 735
+ +V+L+P+Y G ++ G E + H GMK++++FVPNH+
Sbjct: 42 VKTVWLSPIYKSPMKDFGYDVSDFTDIDPMFGTMEDFERLLAAMHDRGMKLIMDFVPNHT 101
Query: 736 SNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
S+KH+WF S +PYT+YY+W D PGTPPNNW
Sbjct: 102 SDKHEWFQLSRNSTNPYTDYYIWADCTADGPGTPPNNW 139
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-19
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 888 MLTLLLPGTAVTFAGDELGMESP-ILRYEDQRDPEGY---------IFGKDNYLKV---- 933
LL GT + G+E+GM +P ED RD E ++ L +
Sbjct: 343 AAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQK 402
Query: 934 CRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRAT 993
RD SR P QWN+++NAGF+ K WL V NY +N + S + Y+ L LR +
Sbjct: 403 SRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKS 462
Query: 994 SGAVRMGDYKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+ GDY+ P+ V+ TRT + + +I N +T++L
Sbjct: 463 EPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGEEKTIELPL 510
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSK 657
GII+K+DYLK+LGV +WL+P + P GYDI+++ ++ FGTM+DF EL+ H +
Sbjct: 5 GIIDKLDYLKDLGVTAIWLSPIFDSPQSYHGYDITDYYKIDPHFGTMDDFKELIDKAHER 64
Query: 658 G 658
G
Sbjct: 65 G 65
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-17
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 782 EVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSN 841
++ R + V+ + +++ EA+ P E++A+Y H + N++ + A +
Sbjct: 242 DIYREWRAVLDEYDPPRVLVAEAWVPDPERLARYLRPD---ELHQAFNFDFLK---APWD 295
Query: 842 AKDLENVVNAYLKSL-PSGKWSSWMVGGHSITRIATRY-----------------SPDLV 883
A L ++ L + G +W++ H + R +RY PDL
Sbjct: 296 AAALRRAIDRSLAAAAAVGAPPTWVLSNHDVVRHVSRYGLPTPGPDPSGIDGTDEPPDLA 355
Query: 884 ------DAMNMLTLLLPGTAVTFAGDELGM-ESPILRYEDQRDPEGYIFGKDNYLKVCRD 936
A +L L LPG+A + G+ELG+ E L ++DP I+ + + RD
Sbjct: 356 LGLRRARAAALLMLALPGSAYLYQGEELGLPEVEDLPDALRQDP---IWERSGGTERGRD 412
Query: 937 GSRVPFQWN-DQENAGFS--KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRAT 993
G RVP W+ D GFS A+ WLP + A++ S S+Y+ LR
Sbjct: 413 GCRVPLPWSGDAPPFGFSPGGAEPWLPQPAWWARYAVDAQEADPGSTLSLYRRALRLRRE 472
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 6e-17
Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 63/249 (25%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKDG---LNGKPGTPPNNW-- 773
H G+K++++ VPNH+S++H WF +S D PY +YY+W+ N + W
Sbjct: 62 HERGIKVILDLVPNHTSDEHAWFQESRSSKDNPYRDYYIWRIYSPPNNWISYFGGSAWSD 121
Query: 774 ---------------KHINITSREVMRSQKDVVQ------------------SFPLI--- 797
N R+ + + VV+ S
Sbjct: 122 DEDGQYLFLVSLPDLNTENPEVRKEL--KDWVVKFWLDKGIDGFRIDAVKHISKGFWHEF 179
Query: 798 ----------LMIITEAYSPSLEKVAKYYGTGDTQGT------HLSVNYEIMNKF-GATS 840
+ + E + S E Y + H + + F
Sbjct: 180 TQEMNEYKPDVFTVGEVWGGSDEDARVYAYNSYMELESGFNFPHFDLGQNVFIPFRLNPF 239
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAV 898
+AKDL+ +++++ P W +G H R +R+ D + L L LPGT
Sbjct: 240 SAKDLKEMISSWQSDYPDVDWLVTFLGNHDQPRFLSRFGDDSAKIKLALALLLTLPGTPY 299
Query: 899 TFAGDELGM 907
+ G+E GM
Sbjct: 300 IYYGEEQGM 308
|
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-16
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 559 NTVIYQILVPSFKDSN-----NDGIGDLRGKNVRKRYLELTLGL------------GIIE 601
+ V YQI F + + G + G Y G GIIE
Sbjct: 1 DAVFYQIFPDRFANGDPSNDPKGGEYNYFGWPDLPDYPPPWGGEPTRRDFYGGDLQGIIE 60
Query: 602 KIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
K+DYLK+LGV ++L P F + N YD +++ ++ GT EDF ELV+ H +G
Sbjct: 61 KLDYLKDLGVNAIYLNPIFEAPSNH--KYDTADYFKIDPHLGTEEDFKELVEEAHKRG 116
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-16
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 28/110 (25%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
W ++ VIY++ V F G + + + + LK+LGV+ LW
Sbjct: 1 WLRDAVIYEVNVRQFTPE-----GTFKA---------------VTKDLPRLKDLGVDILW 40
Query: 616 LTPFY-------SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L P + G G Y + ++ V ++GT+EDF LV H +G
Sbjct: 41 LMPIHPIGEKNRKGSLGS-PYAVKDYRAVNPEYGTLEDFKALVDEAHDRG 89
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-15
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKDGLNGKPGTPPNNWKHI 776
H+ G+KI+++ V NH+S++H WF +S D PY +YY+W+D GK G PPNNW+
Sbjct: 83 HKRGIKIIMDLVVNHTSDEHPWFQESRSSRDNPYRDYYIWRD---GKDGKPPNNWRSF 137
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 9e-15
Identities = 51/235 (21%), Positives = 81/235 (34%), Gaps = 44/235 (18%)
Query: 773 WKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI 832
WK R+ ++S K ++ E + +A YY +G + + I
Sbjct: 206 WKEF----RDYVKSVKPDA-------YLVGEVWD-DPSTIAPYYASGLDSAFNFDLAEAI 253
Query: 833 M----NKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNM 888
+ N AK L V Y K P + + H R+A++ D +
Sbjct: 254 IDSVKNGGSGAGLAKALLRVYELYAKYNPDYIDAP-FLSNHDQDRVASQLGGDE-AKAKL 311
Query: 889 ---LTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN 945
L L LPG + G+E+GM D + R P W+
Sbjct: 312 AAALLLTLPGNPFIYYGEEIGMLGS---------------KPDENI-------RTPMSWD 349
Query: 946 DQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
AGF+ P + N T + +A++ S + YK L LR A+ G
Sbjct: 350 ADSGAGFTTWIPPRP-NTNATTASVEAQEADPDSLLNHYKRLIALRNEYPALARG 403
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-14
Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 29/248 (11%)
Query: 788 KDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT------HLSVNYEIMNKFG-ATS 840
+DV P LM + E S SLE +Y ++ + HL V+Y K+ A
Sbjct: 238 RDVFT--PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPNGEKWTLAKP 295
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPD---LVDAMNMLTLLL---P 894
+ L+ + + + + + W++ H RI +R+ + V A ML ++L
Sbjct: 296 DFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQ 355
Query: 895 GTAVTFAGDELGMESP-ILRYEDQRDPEGY-IFG--------KDNYLKV----CRDGSRV 940
GT + G+E+GM +P R D RD E +F D L + RD SR
Sbjct: 356 GTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRT 415
Query: 941 PFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
P QW++ +NAGF++ + W+ + NY +N +A + S + Y+ L LR + G
Sbjct: 416 PMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWG 475
Query: 1001 DYKISTPN 1008
DY+ PN
Sbjct: 476 DYQDLLPN 483
|
Length = 551 |
| >gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-14
Identities = 23/56 (41%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
H G+K++++FVPNH+S++H WF++S + + +P ++Y+W+D G PPNNW+
Sbjct: 86 HARGLKVILDFVPNHTSDQHPWFLESRSSRDNPKRDWYIWRDPAPD--GGPPNNWR 139
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450 |
| >gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-14
Identities = 43/121 (35%), Positives = 56/121 (46%), Gaps = 26/121 (21%)
Query: 558 KNTVIYQILVPSFKD---SNNDGIG----DLRGKNVRKRY----LELTLGLGIIEKIDYL 606
+ VIYQIL F D SNN D N++K Y + GII+K+ YL
Sbjct: 3 ETDVIYQILTDRFYDGDTSNNPPGSPGLYDPTHSNLKK-YWGGDWQ-----GIIDKLPYL 56
Query: 607 KELGVETLWLTPFY----SGPNGDI-----GYDISNHTEVGKDFGTMEDFDELVKLVHSK 657
K+LGV +W++P S G GY + + FGT EDFDELV H+
Sbjct: 57 KDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTNEHFGTWEDFDELVDAAHAN 116
Query: 658 G 658
G
Sbjct: 117 G 117
|
Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-13
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 723 GMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHIN 777
+K++++ PNHSS +H F S K PY + +VW D GK TPPNNW +
Sbjct: 128 DIKVILDLTPNHSSKQHPLFKDSVLKEPPYRSAFVWAD---GKGHTPPNNWLSVT 179
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477 |
| >gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDP-TAYDHIYTIDQPETY 402
+L FWL RGVDGF +D + L + F + P P R P HIYT DQPET+
Sbjct: 182 VLRFWLDRGVDGFRVDVLWLLIKDPQFRDNPPNP--DWRGGMPPHERLLHIYTADQPETH 239
Query: 403 EMLYKWRTLVEKFG 416
E++ + R +V++FG
Sbjct: 240 EIVREMRRVVDEFG 253
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-12
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKDGLNGKP-GTPPNNW 773
H G+K++++ V +H+S++H WF +S Q D P ++YVW D KP G+PPNNW
Sbjct: 86 HALGLKVMIDQVLSHTSDQHPWFEESRQSRDNPKADWYVWAD---PKPDGSPPNNW 138
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-12
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVH 655
G+ EKI YLKELGV L L P P G D GY +S++ EV GTMED L +
Sbjct: 87 GLAEKIPYLKELGVTYLHLMPLLKPPEGDNDGGYAVSDYREVDPRLGTMEDLRALAAELR 146
Query: 656 SKG 658
+G
Sbjct: 147 ERG 149
|
Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 536 |
| >gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 561 VIYQILVPSFKD---SNNDGIGD---LRGKNVRKRYLELTLG---LGIIEKIDYLKELGV 611
IY ++ F D SN++G GD Y G G+I+K+DY+K+LG
Sbjct: 4 TIYFVMTDRFYDGDPSNDNGGGDGDPRSNPTDNGPYH----GGDFKGLIDKLDYIKDLGF 59
Query: 612 ETLWLTP------FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+TP +G G GY + + GT D +L+ H++G
Sbjct: 60 TAIWITPVVKNRSVQAGSAGYHGYWGYDFYRIDPHLGTDADLQDLIDAAHARG 112
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344 |
| >gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-11
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGL-------------GIIEKIDYLK 607
V+Y +LV F D G + E G G+ K+ YLK
Sbjct: 1 VLYFLLVDRFSDGKERPRPLFDGNDPAVATWEDNFGWESQGQRFQGGTLKGVRSKLGYLK 60
Query: 608 ELGVETLWLTPFYSGPNGDI---GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV LWL+P + GY I N +V FGT ED +LV H++G
Sbjct: 61 RLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDPRFGTREDLRDLVDAAHARG 114
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443 |
| >gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-11
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 561 VIYQILVPSFK--DSNNDGIGDLRGK----NVRKRYLELTLG---LGIIEKIDYLKELGV 611
VIY I+ F D +ND + + K N R+ G GII+ +DYL++LGV
Sbjct: 5 VIYLIMPDRFANGDPSNDSVPGMLEKADRSNPNGRH-----GGDIQGIIDHLDYLQDLGV 59
Query: 612 ETLWLTPFY--SGPNGDI-GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WLTP P+ GY ++ + FG+ ED+ ELV H++G
Sbjct: 60 TAIWLTPLLENDMPSYSYHGYAATDFYRIDPRFGSNEDYKELVSKAHARG 109
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
G++I+++ V NH+S +H WF ++ K PY +Y+W+D G+P TPPNNW+
Sbjct: 91 KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRD---GEPETPPNNWR 142
|
Length = 551 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKDGLNGKPGTPPNN-WKHIN 777
H+ G+K++++ V NH+S++H WF ++A D PY +YY+W D G + N W
Sbjct: 80 HKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPYRDYYIWADDDPGGWSSWGGNVWHKAG 139
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRG 54
K+WW+N V YQI SFKDS+ DGIGDL+G
Sbjct: 2 KDWWENAVFYQIYPRSFKDSDGDGIGDLKG 31
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 863 SWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEG 922
S H R+ R + + + L +PG + GDE+GM RY +
Sbjct: 312 SLPTCNHDTPRLNARLTEEELKLAFAFLLTMPGVPFIYYGDEIGM-----RY---IEGLP 363
Query: 923 YIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS---WLPVHPNYWTLNAQAEKKTKPS 979
G N R GSR P QW+ +NAGFS A + +LPV P A++ S
Sbjct: 364 SKEGGYN-----RTGSRTPMQWDSGKNAGFSTAPAERLYLPVDPAPDRPTVAAQEDDPNS 418
Query: 980 HYSVYKDLTTL 990
+ +DL L
Sbjct: 419 LLNFVRDLIAL 429
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 9e-10
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRG 54
WW+ VIYQI SF DSN DGIGDL G
Sbjct: 1 PWWRGAVIYQIYPRSFLDSNGDGIGDLPG 29
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
W+KN VIYQ+ V +F DSN DGIGD RG + YL+ LG+
Sbjct: 1 WYKNAVIYQLDVRTFMDSNGDGIGDFRGLTEKLDYLQ-WLGVT 42
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 65/236 (27%)
Query: 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG---ATSNAKDLENVVNAYLKS 855
+++ EA E+V +Y+G GD H++ N+ + + A +A + + +
Sbjct: 234 ILLAEANQWP-EEVREYFGDGD--ELHMAFNFPLNPRLFLALAREDAFPIIDALRQTPPI 290
Query: 856 LPSGKWSSW----------MVGGHSITRIATRYSPD-----------------------L 882
+W+++ M+ + ++PD
Sbjct: 291 PEGCQWANFLRNHDELTLEMLTDEERDYVYAAFAPDPRMRIYNRGIRRRLAPMLGGDRRR 350
Query: 883 VDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942
++ L LPGT V + GDE+GM G + YL RDG R P
Sbjct: 351 IELAYSLLFSLPGTPVIYYGDEIGM------------------GDNLYLPD-RDGVRTPM 391
Query: 943 QWNDQENAGFSKA---KSWLPVHPN----YWTLNAQAEKKTKPSHYSVYKDLTTLR 991
QW+ N GFS A K +LPV + Y +N +A+++ S + + L LR
Sbjct: 392 QWSADRNGGFSTADPQKLYLPVIDDGPYGYERVNVEAQRRDPSSLLNWVRRLIALR 447
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
WW++ V+YQ+ SF D+N DGIGDL G +R R YL LG+D
Sbjct: 1 PWWRDAVVYQVYPRSFADANGDGIGDLAG--IRARLPYLA-ALGVD 43
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYD---HIYTIDQPE 400
+L+ WL GV GF + + L E + +E ++ P Y HI T + PE
Sbjct: 218 VLKHWLDLGVRGFRLANAKYLLEDPNLKDEEI---SSNTKGVTPNDYGFYTHIKTTNLPE 274
Query: 401 TYEMLYKWRTLV 412
E+L +WR++V
Sbjct: 275 LGELLREWRSVV 286
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 4e-09
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 29 KNTVIYQILVPSFKDSNNDGIGDLRG 54
K V+YQI SFKDSN DGIGDL G
Sbjct: 1 KEAVVYQIYPRSFKDSNGDGIGDLPG 26
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 27/161 (16%)
Query: 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN 945
+ L L LPG+ + + GDE+GM G + +L R+G R P QW+
Sbjct: 356 LTALLLSLPGSPILYYGDEIGM------------------GDNIWLGD-RNGVRTPMQWS 396
Query: 946 DQENAGFSKAKS---WLPV--HPNYW--TLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998
NAGFS A +LP P Y +N +A+ + S + + +R A
Sbjct: 397 PDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFG 456
Query: 999 MGDYK-ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDL 1038
G + T N V R V + N + + V+L
Sbjct: 457 RGSLTFLPTGNRRVLAFLREYEGERVLCVFNFSRNPQAVEL 497
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 63/232 (27%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHI--- 776
H GMK+++++V NH++ H + + +Y+ +G +W +
Sbjct: 86 HDRGMKVILDWVANHTAWDHPLV-------EEHPEWYLRDS--DGNITNKVFDWTDVADL 136
Query: 777 NITSREVMRSQKDVVQ---------------------SF-------------PLILMIIT 802
+ ++ E+ D ++ F + ++
Sbjct: 137 DYSNPELRDYMIDAMKYWVREFDVDGFRCDVAWGVPLDFWKEARAELRAVKPDVFMLAEA 196
Query: 803 EAYSPSLEKVAKYYG----TGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLP 857
E Y T D + +N ++A DL + +NA P
Sbjct: 197 EPRDDDE-----LYSAFDMTYDWDL------HHTLNDVAKGKASASDLLDALNAQEAGYP 245
Query: 858 SGKWSSWMVGGHSITRIA-TRYSPDLVDAMNMLTLLLPGTAVTFAGDELGME 908
+ H R A T D + A L+ LPG + + G E G++
Sbjct: 246 KNAVKMRFLENHDENRWAGTVGEGDALRAAAALSFTLPGMPLIYNGQEYGLD 297
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336 |
| >gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
WW+ VIYQI SF+DSN DG+GDLRG R YL LG+D
Sbjct: 1 LWWQTGVIYQIYPRSFQDSNGDGVGDLRGIISRLDYLS-DLGVD 43
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-09
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEA-AGRPDSDPTAYDHIYTIDQPETY 402
+L FWL +GVDGF +D+V L E +EP++ + + H YT +Q +
Sbjct: 183 VLRFWLDKGVDGFRVDAVKHLLEATHLRDEPQVNPTQPPETQYNYSELYHDYTTNQEGVH 242
Query: 403 EMLYKWRTLVEKFGNQSADRQPSCADKFAIHSVYLNP 439
+++ WR ++K+ ++ +F I VY +
Sbjct: 243 DIIRDWRQTMDKYSSEPG------RYRFMITEVYDDI 273
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLE 63
WW+ +VIYQI SFKDSN DG GDL+G + YL+
Sbjct: 2 WWQTSVIYQIYPRSFKDSNGDGNGDLKGIREKLDYLK 38
|
SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456 |
| >gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 341 LLCILEFWLKRGVDGFGMDSVLKLYEH-ESFANEPRLPEAAGRPDSDPTA----YDHIYT 395
LL + FWL RGVDGF +D+V Y H + + P P PT HI+
Sbjct: 179 LLDVARFWLDRGVDGFRLDAV-NFYMHDPALRDNPPRPPDEREDGVAPTNPYGMQLHIHD 237
Query: 396 IDQPETYEMLYKWRTLVEKFGN 417
QPE L + R L++++
Sbjct: 238 KSQPENLAFLERLRALLDEYPG 259
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-08
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKDGLNGKPGTPPNNW 773
H G++++++ V NH+S++H WF + + D PY +YYVW D TPP
Sbjct: 85 HERGIRVIIDLVVNHTSDQHPWFQAARRDPDSPYRDYYVWSD-------TPPKYK 132
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
+ +KI+++ V NH+S +H+WF K+ PY ++Y+W+D G PP NW+
Sbjct: 85 KKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDP----KGKPPTNWQ 135
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-08
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS--AQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
H G++++V+ VPNH+S++H WF + A P Y+++DG PPNNW
Sbjct: 86 HELGLRVIVDIVPNHTSDQHPWFQAALAAGPGSPERARYIFRDGRGPDGELPPNNW 141
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
W+K+ V Y++ V SF DSN DGIGD G + YL+ LG+D
Sbjct: 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLK-WLGVD 43
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
WW+N VIYQI SF+D+ G GDLRG R YL+ LG+D
Sbjct: 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQ-KLGVD 48
|
Length = 551 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKI-DPYTNYYVWKDGLNGKPGTPP 770
H+ G+ +L++ VP H+S++H WF +S + + Y++ Y+W D + P
Sbjct: 80 HKRGIHVLLDLVPGHTSDEHPWFKESKKAENNEYSDRYIWTDSIWSGGPGLP 131
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYTNYYVWKD 760
H GM+++++ V NH+S++H WF ++ D PY ++YVW D
Sbjct: 86 HARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSD 127
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539 |
| >gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
WW+ VIYQI SF DS DG GDLRG + YL+ LG+D
Sbjct: 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLK-KLGVD 42
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543 |
| >gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
++ VIY++LV F GD +G +I+K+DYL++LGV + L
Sbjct: 14 EDLVIYELLVRDF-----TERGDFKG---------------VIDKLDYLQDLGVNAIELM 53
Query: 618 PF--YSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P + G N GY+ ++ + K +GT ED LV H +G
Sbjct: 54 PVQEFPG-NDSWGYNPRHYFALDKAYGTPEDLKRLVDECHQRG 95
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390 |
| >gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 600 IEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+DYL +LG+ L+L+P F + P GYD+ + TE+ + G E + LV + S+G
Sbjct: 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRG 81
|
Length = 889 |
| >gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 37/129 (28%)
Query: 557 WKNTVIYQILVPSFK--DSNNDG-----------IGDLRGKNVRKRYLELTLGLGIIEKI 603
W N +Y +L F+ D +ND IG G ++R G+ EK+
Sbjct: 187 WHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLR----------GLTEKL 236
Query: 604 DYLKELGVETLWLTPFYS--------GPNGDI------GYDISNHTEVGKDFGTMEDFDE 649
DYL++LGV LW++ G GD GY + T++ + GT D
Sbjct: 237 DYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRT 296
Query: 650 LVKLVHSKG 658
LV H +G
Sbjct: 297 LVDEAHQRG 305
|
Length = 683 |
| >gnl|CDD|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 23/105 (21%)
Query: 555 EWWKNTVIYQIL-VPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVET 613
WW +YQI + +F S G+ G+ K+DYL +L V+
Sbjct: 11 NWWNEGPLYQIGDLQAF--SEAGGLK------------------GVEGKLDYLSQLKVKG 50
Query: 614 LWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L L P + G N TE+ D GT+EDF L+ H KG
Sbjct: 51 LVLGPIHVVQADQPG--ELNLTEIDPDLGTLEDFTSLLTAAHKKG 93
|
4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 326 |
| >gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 603 IDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ YLK LGV L+L+P + P GYD+ +H+E+ + G E L + ++G
Sbjct: 22 LPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARG 78
|
This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 825 |
| >gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-06
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 597 LGIIEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVH 655
L + + + +LKELG L+L P F S +G YD ++ + + GT EDF LV +H
Sbjct: 28 LKLEDWLPHLKELGCNALYLGPVFESDSHG---YDTRDYYRIDRRLGTNEDFKALVAALH 84
Query: 656 SKG 658
+G
Sbjct: 85 ERG 87
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328 |
| >gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
W++ IYQ+L F ++ + Y T GII K+DY++ +G + +W+
Sbjct: 6 WRSRSIYQVLTDRFARTDGSSTAPC--DTADRTYCGGTW-KGIINKLDYIQGMGFDAIWI 62
Query: 617 TPFYSGPNGDIGYDISNH-------TEVGKDFGTMEDFDELVKLVHSKG 658
+P G+ Y + H + FGT +D L K +H +G
Sbjct: 63 SPIVKNIEGNTAYGEAYHGYWAQDLYSLNPHFGTADDLKALSKALHKRG 111
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375 |
| >gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 34/196 (17%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDG--LNGKPGTPPNNWKHIN 777
H+ G+K++++ V NH + + + V DG L+ P
Sbjct: 86 HKRGIKVILDLVFNHDILRF------------WLDEGV--DGFRLDAAKHVPKPEPV--- 128
Query: 778 ITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT-HLSVNYEIMNKF 836
E +R + + +++ EA+ E +AK + + +
Sbjct: 129 ----EFLREIRKDAKLAKPDTLLLGEAWGGPDELLAKAGFDDGLDSVFDFPLLEALRDAL 184
Query: 837 GATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-------PDLVDAMNML 889
A ++ A L P G +G H R+A S + L
Sbjct: 185 KGGEGA---LAILAALLLLNPEGALLVNFLGNHDTFRLADLVSYKIVELRKARLKLALAL 241
Query: 890 TLLLPGTAVTFAGDEL 905
L LPGT + + +L
Sbjct: 242 LLTLPGTPMIYYIKKL 257
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260 |
| >gnl|CDD|200475 cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 603 IDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ YL +LG+ L+ +P + P GYD+ +HT + + G E L + + G
Sbjct: 20 VPYLADLGISHLYASPILTARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 76
|
Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 660 |
| >gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 5e-05
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
++ FWL +GVDGF +D + + + F + P P H Y + P +E
Sbjct: 178 MMRFWLDKGVDGFRLDVINLISKDPDFPDAP--------PGDGDGLSGHKYYANGPGVHE 229
Query: 404 ML 405
L
Sbjct: 230 YL 231
|
The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428 |
| >gnl|CDD|237740 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-05
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 600 IEKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
E + Y +LGV L+L+P + P GYD+ +HT + + G E L + + G
Sbjct: 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 82
|
Length = 879 |
| >gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-05
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 32 VIYQILVPSFKDSNNDGIGDLRG 54
V Y+I V SF DS+ DGIGDL G
Sbjct: 2 VFYEIFVRSFYDSDGDGIGDLNG 24
|
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403 |
| >gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSK 657
GI EK+ YLK+LGV L+L P ++ P+ YD ++ V G L +
Sbjct: 180 GISEKLPYLKKLGVTALYLNPIFTAPSVH-KYDTEDYRHVDPQLGGDAALLRLRHATQQR 238
Query: 658 G 658
G
Sbjct: 239 G 239
|
Length = 598 |
| >gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRP-DSDPTAYDHIYTIDQPETY 402
+L FWL RGVDGF +D L A +P LP+A G H Y D+ E +
Sbjct: 189 VLRFWLDRGVDGFRIDVAHGL------AKDPGLPDAPGGGLPVGERPGSHPY-WDRDEVH 241
Query: 403 EMLYKWRTLVEKF 415
++ +WR +++++
Sbjct: 242 DIYREWRAVLDEY 254
|
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481 |
| >gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-05
Identities = 52/282 (18%), Positives = 91/282 (32%), Gaps = 85/282 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKDGLNGKPGTPPN--NWKH 775
H+ G++++++ V NH+ + +F + + Y +++ PPN +W
Sbjct: 113 HKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAYQDWFSIYYFWPYFTDEPPNYESWWG 172
Query: 776 I------NITSREVMRSQKDVVQ---SFPLI----------------------------- 797
+ N + EV V + I
Sbjct: 173 VPSLPKLNTENPEVREYLDSVARYWLKEGDIDGWRLDVADEVPHEFWREFRKAVKAVNPD 232
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NY---EIMNKF--GATSNAKDLENVVN 850
II E + QG SV NY + + F G +A++ N +N
Sbjct: 233 AYIIGEVW---------EDARPWLQGDQFDSVMNYPFRDAVLDFLAGEEIDAEEFANRLN 283
Query: 851 AYLKSLPSGKWSS--WMVGGHSITRIATRYSPDLVDAMNMLTLL--LPGTAVTFAGDELG 906
+ + P + ++ H RI T D L L LPG + GDE+G
Sbjct: 284 SLRANYPKQVLYAMMNLLDSHDTPRILTLLGGDKARLKLALALQFTLPGAPCIYYGDEIG 343
Query: 907 MESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQE 948
+E GKD +R P W++++
Sbjct: 344 LEG----------------GKDPD-------NRRPMPWDEEK 362
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389 |
| >gnl|CDD|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 44/195 (22%)
Query: 797 ILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSL 856
+L+ +T + S S + +T G L ++ +++ S + +++
Sbjct: 170 VLIGVTSSSSLSEISL-----LLNTSGVDLLLSGALLSASNRPSFGTLVTQLLSTT---- 220
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYED 916
+ +W +G +A+ LV +L LPGT V GDE+G++
Sbjct: 221 -GQRSLAWGIGARQGGHLASLVPAALVRLYQLLLFTLPGTPVFNYGDEIGLQD------- 272
Query: 917 QRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKT 976
G + E + N + A+A+K+
Sbjct: 273 ------------------AQGKSPKMLRPNNE--------PEIAEEVN-ANMTAKAQKED 305
Query: 977 KPSHYSVYKDLTTLR 991
+ S S ++ L+ LR
Sbjct: 306 RGSLRSFFRSLSDLR 320
|
4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 326 |
| >gnl|CDD|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 9e-05
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 597 LGIIEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVH 655
L + + I +LK+LG+ ++ P F S +G YD ++ ++ + GT EDF + K +H
Sbjct: 30 LKLEDWIPHLKKLGINAIYFGPVFESDSHG---YDTRDYYKIDRRLGTNEDFKAVCKKLH 86
Query: 656 SKG 658
G
Sbjct: 87 ENG 89
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 366 |
| >gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
W+ VIY++ V SF G Y EL IE + YLKELG+ + L
Sbjct: 142 WEPIVIYELHVGSFTPDRFLG------------YFELA-----IELLPYLKELGITHIEL 184
Query: 617 TPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P P + GY + + +GT EDF LV H G
Sbjct: 185 MPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAG 227
|
Length = 628 |
| >gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 32 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYL-EL---TLGLDPCGSS 74
V Y+I SF DSN DGIGDL+G + Y+ L + L+PC S
Sbjct: 1 VFYEIYPQSFYDSNGDGIGDLQGIISKLDYIKSLGCNAIWLNPCFDS 47
|
The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429 |
| >gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 23/70 (32%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
I++FWL GVDGF +D+V L E E E PET++
Sbjct: 181 IMDFWLDLGVDGFRLDAVPYLIEREGTNCENL-----------------------PETHD 217
Query: 404 MLYKWRTLVE 413
L + R V+
Sbjct: 218 FLKRLRAFVD 227
|
Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447 |
| >gnl|CDD|200482 cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 599 IIEKIDYLKELGVETLWLTP-------FYSGPN-------GDIG--YDISN----HTEVG 638
++ + +G + L+L P G N GD G + I + H +
Sbjct: 25 AEARLPRIAAMGFDVLYLPPIHPIGRTNRKGKNNALVAGPGDPGSPWAIGSEEGGHDAIH 84
Query: 639 KDFGTMEDFDELVKLVHSKG 658
+ GT+EDFD LV G
Sbjct: 85 PELGTLEDFDRLVAEARELG 104
|
GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 355 |
| >gnl|CDD|237737 PRK14507, PRK14507, putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 600 IEKIDYLKELGVETLWLTPFYSGPNGDI-GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ YL LG+ ++ +P G GYDI +H+++ + G E F+ + + G
Sbjct: 761 EAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHG 820
|
Length = 1693 |
| >gnl|CDD|200468 cd11329, AmyAc_maltase-like, Alpha amylase catalytic domain family found in maltase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 812 VAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSI 871
V + GT D L + + K A L ++ + + W W +
Sbjct: 306 VYQVNGTLDL-LIDLPLYGNFLAKLSKAITANALHKILASISTVSATTSWPQWNLRYRDT 364
Query: 872 TRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYE 915
+A+ DA+ + T LLPGT V EL
Sbjct: 365 KVVAS-------DALTLFTSLLPGTPVVPLDSELYANVSKPTIS 401
|
Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 477 |
| >gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 866 VGGHSITRIATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELG 906
VG H +TRIA++ D A +L +PG + GDE G
Sbjct: 262 VGNHDVTRIASQVGDDGAALAAAVL-FTVPGIPSIYYGDEQG 302
|
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357 |
| >gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 598 GIIEKIDYLKELGVETLWLTP---FYSGPNGDI--GYDISNHTEVGKDFGTMEDFDELVK 652
IE++DYL +LGV + L P F G+ GYD +G +D LV
Sbjct: 56 AAIERLDYLADLGVTAIELMPVAEF----PGERNWGYDGVLPFAPESSYGGPDDLKRLVD 111
Query: 653 LVHSKG 658
H +G
Sbjct: 112 AAHRRG 117
|
Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 100.0 | |
| PRK10933 | 551 | trehalose-6-phosphate hydrolase; Provisional | 100.0 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 100.0 | |
| KOG0471|consensus | 545 | 100.0 | ||
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 100.0 | |
| TIGR02403 | 543 | trehalose_treC alpha,alpha-phosphotrehalase. Treha | 100.0 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 100.0 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 100.0 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 100.0 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 100.0 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 100.0 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 100.0 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 100.0 | |
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 100.0 | |
| KOG0471|consensus | 545 | 100.0 | ||
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 100.0 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 100.0 | |
| TIGR02456 | 539 | treS_nterm trehalose synthase. Trehalose synthase | 100.0 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 100.0 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 100.0 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 100.0 | |
| PLN02960 | 897 | alpha-amylase | 100.0 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 100.0 | |
| PRK10785 | 598 | maltodextrin glucosidase; Provisional | 100.0 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 100.0 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 100.0 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 100.0 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 100.0 | |
| COG0366 | 505 | AmyA Glycosidases [Carbohydrate transport and meta | 100.0 | |
| PRK09505 | 683 | malS alpha-amylase; Reviewed | 100.0 | |
| PLN02361 | 401 | alpha-amylase | 100.0 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 99.98 | |
| PF00128 | 316 | Alpha-amylase: Alpha amylase, catalytic domain; In | 99.97 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 99.97 | |
| TIGR02455 | 688 | TreS_stutzeri trehalose synthase, Pseudomonas stut | 99.96 | |
| PLN02784 | 894 | alpha-amylase | 99.96 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.96 | |
| PRK12313 | 633 | glycogen branching enzyme; Provisional | 99.95 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.94 | |
| PLN03244 | 872 | alpha-amylase; Provisional | 99.93 | |
| TIGR01515 | 613 | branching_enzym alpha-1,4-glucan:alpha-1,4-glucan | 99.92 | |
| PRK09441 | 479 | cytoplasmic alpha-amylase; Reviewed | 99.92 | |
| PRK05402 | 726 | glycogen branching enzyme; Provisional | 99.92 | |
| TIGR02402 | 542 | trehalose_TreZ malto-oligosyltrehalose trehalohydr | 99.92 | |
| KOG0470|consensus | 757 | 99.92 | ||
| PRK12568 | 730 | glycogen branching enzyme; Provisional | 99.92 | |
| PRK13840 | 495 | sucrose phosphorylase; Provisional | 99.91 | |
| TIGR02100 | 688 | glgX_debranch glycogen debranching enzyme GlgX. Th | 99.91 | |
| TIGR03852 | 470 | sucrose_gtfA sucrose phosphorylase. In the forward | 99.91 | |
| PRK03705 | 658 | glycogen debranching enzyme; Provisional | 99.91 | |
| PRK14706 | 639 | glycogen branching enzyme; Provisional | 99.91 | |
| PLN02960 | 897 | alpha-amylase | 99.9 | |
| PRK14705 | 1224 | glycogen branching enzyme; Provisional | 99.9 | |
| TIGR02104 | 605 | pulA_typeI pullulanase, type I. Pullulan is an unu | 99.88 | |
| PLN00196 | 428 | alpha-amylase; Provisional | 99.87 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.87 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 99.87 | |
| PRK14510 | 1221 | putative bifunctional 4-alpha-glucanotransferase/g | 99.87 | |
| TIGR02102 | 1111 | pullulan_Gpos pullulanase, extracellular, Gram-pos | 99.86 | |
| PLN02447 | 758 | 1,4-alpha-glucan-branching enzyme | 99.86 | |
| PLN02361 | 401 | alpha-amylase | 99.84 | |
| PLN02784 | 894 | alpha-amylase | 99.82 | |
| TIGR02103 | 898 | pullul_strch alpha-1,6-glucosidases, pullulanase-t | 99.81 | |
| COG1523 | 697 | PulA Type II secretory pathway, pullulanase PulA a | 99.78 | |
| PLN02877 | 970 | alpha-amylase/limit dextrinase | 99.78 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 99.73 | |
| TIGR02401 | 825 | trehalose_TreY malto-oligosyltrehalose synthase. T | 99.67 | |
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.67 | |
| KOG0470|consensus | 757 | 99.64 | ||
| PLN03244 | 872 | alpha-amylase; Provisional | 99.53 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 99.41 | |
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 99.33 | |
| PRK14511 | 879 | maltooligosyl trehalose synthase; Provisional | 99.15 | |
| KOG2212|consensus | 504 | 99.11 | ||
| PRK14507 | 1693 | putative bifunctional 4-alpha-glucanotransferase/m | 99.07 | |
| KOG2212|consensus | 504 | 98.66 | ||
| TIGR01531 | 1464 | glyc_debranch glycogen debranching enzymye. glycog | 98.51 | |
| PF11941 | 89 | DUF3459: Domain of unknown function (DUF3459); Int | 98.48 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 98.47 | |
| COG3280 | 889 | TreY Maltooligosyl trehalose synthase [Carbohydrat | 98.32 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 98.0 | |
| PF14872 | 811 | GHL5: Hypothetical glycoside hydrolase 5 | 97.14 | |
| KOG3625|consensus | 1521 | 97.11 | ||
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 96.63 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 96.02 | |
| PF02324 | 809 | Glyco_hydro_70: Glycosyl hydrolase family 70; Inte | 95.34 | |
| PF14701 | 423 | hDGE_amylase: glucanotransferase domain of human g | 95.14 | |
| PF11852 | 168 | DUF3372: Domain of unknown function (DUF3372); Int | 94.93 | |
| PF10438 | 78 | Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal | 94.26 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 93.89 | |
| PF02806 | 95 | Alpha-amylase_C: Alpha amylase, C-terminal all-bet | 93.84 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 91.73 | |
| PF14871 | 132 | GHL6: Hypothetical glycosyl hydrolase 6 | 91.26 | |
| COG1649 | 418 | Uncharacterized protein conserved in bacteria [Fun | 89.9 | |
| cd06592 | 303 | GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact | 86.68 | |
| PF00150 | 281 | Cellulase: Cellulase (glycosyl hydrolase family 5) | 86.3 | |
| PF02638 | 311 | DUF187: Glycosyl hydrolase like GH101; InterPro: I | 86.13 | |
| cd06593 | 308 | GH31_xylosidase_YicI YicI alpha-xylosidase is a gl | 81.76 | |
| cd06562 | 348 | GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c | 81.69 | |
| PRK14508 | 497 | 4-alpha-glucanotransferase; Provisional | 81.14 |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=598.35 Aligned_cols=418 Identities=30% Similarity=0.591 Sum_probs=341.6
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.|.||+++|||||+|++|.+++++++|||+ ||+++|||||+||||+|||+||++++..+|||++.
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~---------------gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~ 68 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLR---------------GVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA 68 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHH---------------HHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc
Confidence 478999999999999999999999999999 99999999999999999999999998878999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||+.|||+|||++||++||++|
T Consensus 69 d~~~id~~~Gt~~d~~~lv~~~---------------------------------------------------------- 90 (551)
T PRK10933 69 NYTAIDPTYGTLDDFDELVAQA---------------------------------------------------------- 90 (551)
T ss_pred cCCCcCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCC------CCCC--c----------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTP------PNNW--K---------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~------~~~W--~---------- 774 (1065)
|++||+||+|+|+||++.+|+||+++....++|.+||+|.++.++.+... .+.| .
T Consensus 91 -------h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 91 -------KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred -------HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 99999999999999999999999998767889999999986432221000 0111 1
Q ss_pred ------cccCCCHHHHHHHHHHHHh----------------c-------------------------------C------
Q psy15051 775 ------HINITSREVMRSQKDVVQS----------------F-------------------------------P------ 795 (1065)
Q Consensus 775 ------~ln~~n~~v~~~l~~~lk~----------------~-------------------------------~------ 795 (1065)
.||+.||+|+++|.++++. + +
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTP 243 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcc
Confidence 1999999999999998321 0 0
Q ss_pred CceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH--hhc------CCChHHHHHHHHHHhhcCCCCCccccccc
Q psy15051 796 LILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK--FGA------TSNAKDLENVVNAYLKSLPSGKWSSWMVG 867 (1065)
Q Consensus 796 ~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~--~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~fle 867 (1065)
++++++||.|..+++....|.... ...+++.|+|..... +.+ ..+...++..+..+...+....+..+|++
T Consensus 244 ~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 322 (551)
T PRK10933 244 RGLMTVGEMSSTSLEHCQRYAALT-GSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWC 322 (551)
T ss_pred cCcEEEEeecCCCHHHHHHhhccc-CCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccCeeccccC
Confidence 035799999986666666664321 245677777754321 111 12345667777777666666678888999
Q ss_pred CCChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc------------
Q psy15051 868 GHSITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD------------ 928 (1065)
Q Consensus 868 nHD~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~------------ 928 (1065)
|||++|+++++|.+ .++++++++||+||+|+||||||+||.+.. ...++++|+++.+....
T Consensus 323 NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~ 402 (551)
T PRK10933 323 NHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELL 402 (551)
T ss_pred CCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999999743 367788999999999999999999999853 23456777776554321
Q ss_pred -cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc
Q psy15051 929 -NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP 1007 (1065)
Q Consensus 929 -~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~ 1007 (1065)
.....+||++|.||+|++..++|||+++||++++++|..+|++.|...+.+++++||+||+|||++|+|+.|+++.+..
T Consensus 403 ~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~ 482 (551)
T PRK10933 403 AILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLP 482 (551)
T ss_pred hhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEecc
Confidence 1334589999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1008 -NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1008 -~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++.|++|.|+.+++.++||+|+++++++++++. +.+.+++++++
T Consensus 483 ~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~---~~~~~~~~l~~ 527 (551)
T PRK10933 483 NHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQ---MRGNWQLLMHN 527 (551)
T ss_pred CCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCc---ccCCceEEeec
Confidence 457999999988899999999999999998873 22455666665
|
|
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=592.10 Aligned_cols=414 Identities=34% Similarity=0.617 Sum_probs=341.5
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCc
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHT 635 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~ 635 (1065)
||+++|||||+|++|.++++++.|||+ ||+++|+|||+|||++|||+||+++++.++||++.||+
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~---------------gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~ 65 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLR---------------GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYY 65 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHH---------------HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccC
Confidence 999999999999999999999999999 99999999999999999999999999888999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
.|||+|||++||++||++|
T Consensus 66 ~id~~~Gt~~~~~~lv~~a------------------------------------------------------------- 84 (543)
T TIGR02403 66 AINPLFGTMADFEELVSEA------------------------------------------------------------- 84 (543)
T ss_pred ccCcccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCC------CCCCCc---------------
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGT------PPNNWK--------------- 774 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~------~~~~W~--------------- 774 (1065)
|++||+||+|+|+||++.+|+||+++..+.++|++||+|.+.. |.+.. ....|.
T Consensus 85 ----h~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 159 (543)
T TIGR02403 85 ----KKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPK-GKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK 159 (543)
T ss_pred ----HHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCC-CCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence 9999999999999999999999999887788999999987643 22100 011121
Q ss_pred ---cccCCCHHHHHHHHHHHHh----------------c-------------------------------------CCce
Q psy15051 775 ---HINITSREVMRSQKDVVQS----------------F-------------------------------------PLIL 798 (1065)
Q Consensus 775 ---~ln~~n~~v~~~l~~~lk~----------------~-------------------------------------~~~~ 798 (1065)
.||+.||+|+++|.++++. + .+++
T Consensus 160 ~~pdln~~np~v~~~i~~~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (543)
T TIGR02403 160 TQADLNWENPEVREELKDVVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDS 239 (543)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCe
Confidence 1999999999999998221 0 2368
Q ss_pred EEEeecCCCChHHHhhhccCCCCccccccccHHHHHH--hhc------CCChHHHHHHHHHHhhcCC-CCCcccccccCC
Q psy15051 799 MIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK--FGA------TSNAKDLENVVNAYLKSLP-SGKWSSWMVGGH 869 (1065)
Q Consensus 799 ~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~--~~~------~~~~~~l~~~l~~~~~~~~-~~~~~~~flenH 869 (1065)
+++||+|..+++....|... ....++++|+|..... ..+ ..+...+...+..+....+ ...+..+|++||
T Consensus 240 ~lvgE~~~~~~~~~~~y~~~-~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~fl~NH 318 (543)
T TIGR02403 240 VTVGEMSSTTIENCIRYSNP-ENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNALFWNNH 318 (543)
T ss_pred EEEEEeCCCCHHHHHhhhCC-CCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceeeecCCC
Confidence 99999998767666666542 2246788888763221 111 1345677777777765554 456667799999
Q ss_pred ChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCcccccccc-------------cc
Q psy15051 870 SITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGK-------------DN 929 (1065)
Q Consensus 870 D~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~-------------~~ 929 (1065)
|++|++++++.. ++|++++++||+||+|+||||||+||.+.. ...++++||...+..+ +.
T Consensus 319 D~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~ 398 (543)
T TIGR02403 319 DQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAI 398 (543)
T ss_pred ChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999742 578888999999999999999999999853 2345667776665432 12
Q ss_pred ccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC-
Q psy15051 930 YLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN- 1008 (1065)
Q Consensus 930 ~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~- 1008 (1065)
+...+||++|.||+|+...++|||+..||++++.+|..+|++.|...+.+++++||+||+|||++|+|+.|+++.+..+
T Consensus 399 ~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~ 478 (543)
T TIGR02403 399 LKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDD 478 (543)
T ss_pred hhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCC
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1009 NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1009 ~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++|++|.|..++++++||+|++++.++++|+... ..+++++++
T Consensus 479 ~~v~a~~R~~~~~~~lVv~N~s~~~~~~~l~~~~---~~~~~~~~~ 521 (543)
T TIGR02403 479 PSVWAYTRTYKNQKLLVINNFYGEEKTIELPLDL---LSGKILLSN 521 (543)
T ss_pred CcEEEEEEEcCCcEEEEEEECCCCCeEeeCCccC---cCceEEEec
Confidence 4799999998899999999999999999997532 334455554
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-58 Score=551.01 Aligned_cols=385 Identities=30% Similarity=0.560 Sum_probs=311.8
Q ss_pred hhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCC
Q psy15051 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNH 634 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy 634 (1065)
.||+++|||||+|++|++++++++|||+ ||+++|||||+||||+|||+||+++++.+|||++.||
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~---------------gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy 65 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFP---------------GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDY 65 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHH---------------HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccc
Confidence 4999999999999999999999999999 9999999999999999999999999887899999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
++|||+|||++|||+||++|
T Consensus 66 ~~vd~~~Gt~~df~~Lv~~a------------------------------------------------------------ 85 (539)
T TIGR02456 66 RAILPEFGTIDDFKDFVDEA------------------------------------------------------------ 85 (539)
T ss_pred cccChhhCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCC--C-----CCCCCCc------------
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKP--G-----TPPNNWK------------ 774 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p--~-----~~~~~W~------------ 774 (1065)
|++||+||+|+|+||++.+|+||+++... +++|.+||+|.......+ + ....+|.
T Consensus 86 -----h~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 160 (539)
T TIGR02456 86 -----HARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHR 160 (539)
T ss_pred -----HHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEec
Confidence 99999999999999999999999988755 678999999864321110 0 0112231
Q ss_pred ------cccCCCHHHHHHHHHHHH--------------------------------------------hcCCceEEEeec
Q psy15051 775 ------HINITSREVMRSQKDVVQ--------------------------------------------SFPLILMIITEA 804 (1065)
Q Consensus 775 ------~ln~~n~~v~~~l~~~lk--------------------------------------------~~~~~~~ligE~ 804 (1065)
.||+.||+||++|.++++ +..|+++++||.
T Consensus 161 f~~~~pdln~~np~vr~~l~~~~~~w~~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~ 240 (539)
T TIGR02456 161 FFSHQPDLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEA 240 (539)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 299999999999988722 123488999998
Q ss_pred CCCChHHHhhhccCCCCccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCCh----------
Q psy15051 805 YSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSI---------- 871 (1065)
Q Consensus 805 ~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~---------- 871 (1065)
+.. +..+..|++.....++++.|++.+...+.. ..+...+...+.... ..+......+|++|||+
T Consensus 241 ~~~-~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~-~~~~~~~~~~fl~nHD~~~~~~~~~~~ 318 (539)
T TIGR02456 241 NQW-PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETP-DIPDSCQWCIFLRNHDELTLEMVTDEE 318 (539)
T ss_pred CCC-HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhh-hccCCCceeeecCCCCccCccccChhh
Confidence 654 555667775422236889999988764422 223455555554432 34444444569999998
Q ss_pred ---------------------hhHhhhcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccc
Q psy15051 872 ---------------------TRIATRYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKD 928 (1065)
Q Consensus 872 ---------------------~Rl~s~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~ 928 (1065)
.|+++.++. ++++++++++||+||+|+||||||+||.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~----------------- 381 (539)
T TIGR02456 319 RDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNI----------------- 381 (539)
T ss_pred hhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCC-----------------
Confidence 466666643 4689999999999999999999999998631
Q ss_pred cccccccCCCCCcCCCCcccccCCCCC---CCCCCCC----CCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC
Q psy15051 929 NYLKVCRDGSRVPFQWNDQENAGFSKA---KSWLPVH----PNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 929 ~~~~~~rd~~R~~m~W~~~~~~gFs~~---~~wl~~~----~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~ 1001 (1065)
....++.+|.||+|+...++|||++ .+|+|.. .++..+|++.|...+.+++++||+|++|||++|||+.|+
T Consensus 382 --~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~ 459 (539)
T TIGR02456 382 --WLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGS 459 (539)
T ss_pred --ccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCc
Confidence 0112455899999999889999988 4477653 357899999999999999999999999999999999999
Q ss_pred eEEEccC-CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1002 YKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1002 ~~~l~~~-~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
++.+..+ ++|++|.|..+++.++||+|+|+++++++|+.
T Consensus 460 ~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~ 499 (539)
T TIGR02456 460 LTFLPTGNRRVLAFLREYEGERVLCVFNFSRNPQAVELDL 499 (539)
T ss_pred eEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEeeccc
Confidence 9988764 57999999999999999999999999988864
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=536.37 Aligned_cols=362 Identities=22% Similarity=0.403 Sum_probs=284.5
Q ss_pred cCChhhcccceEEEEecccccCcCCCC---CCCC----CC--------------cccchhhhcccccccHHhhhHHHHHc
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDG---IGDL----RG--------------KNVRKRYLELTLGLGIIEKIDYLKEL 609 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~---~Gdl----~g--------------~~~~~~~~~~t~~~Gl~~kLdYLk~L 609 (1065)
..+|+|++++|||||+||||.+|++++ .|.. +| ......|+||++ +||++||||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl-~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDL-DGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCH-HHHHHHHHHHHHc
Confidence 467899999999999999999988532 1111 00 012346889998 9999999999999
Q ss_pred CcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccc
Q psy15051 610 GVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFA 689 (1065)
Q Consensus 610 GvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~ 689 (1065)
|||+|||+||++++++ |||++.||++|||+|||.+||++||++|
T Consensus 192 Gv~~I~L~Pif~s~s~-hgYd~~Dy~~iDp~~Gt~~df~~Lv~~a----------------------------------- 235 (598)
T PRK10785 192 GVTALYLNPIFTAPSV-HKYDTEDYRHVDPQLGGDAALLRLRHAT----------------------------------- 235 (598)
T ss_pred CCCEEEeCCcccCCCC-CCcCcccccccCcccCCHHHHHHHHHHH-----------------------------------
Confidence 9999999999999886 9999999999999999999999999999
Q ss_pred ccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--------CCCCCcceeecCC
Q psy15051 690 IHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--------IDPYTNYYVWKDG 761 (1065)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--------~~~~~d~y~~~~~ 761 (1065)
|++||+||||+|+||++.+|+||+....+ .++|.+||.+...
T Consensus 236 ------------------------------H~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~ 285 (598)
T PRK10785 236 ------------------------------QQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD 285 (598)
T ss_pred ------------------------------HHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCC
Confidence 99999999999999999999999876432 4689999988753
Q ss_pred CCCCCCCCCCCCcc------ccCCCHHHHHHHHH----H----H------------------------------------
Q psy15051 762 LNGKPGTPPNNWKH------INITSREVMRSQKD----V----V------------------------------------ 791 (1065)
Q Consensus 762 ~dG~p~~~~~~W~~------ln~~n~~v~~~l~~----~----l------------------------------------ 791 (1065)
|. ..+|.. ||+.||+|+++|.+ + +
T Consensus 286 --~~----~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~ 359 (598)
T PRK10785 286 --GR----ALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQA 359 (598)
T ss_pred --CC----cCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHH
Confidence 21 233432 99999999999985 2 1
Q ss_pred -HhcCCceEEEeecCCCChHHHhhhccCC-CCccccc-cccHHHHHHhhc--------CCChHHHHHHHHHHhhcCCCCC
Q psy15051 792 -QSFPLILMIITEAYSPSLEKVAKYYGTG-DTQGTHL-SVNYEIMNKFGA--------TSNAKDLENVVNAYLKSLPSGK 860 (1065)
Q Consensus 792 -k~~~~~~~ligE~~~~~~~~~~~y~~~~-~~~~~d~-~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~ 860 (1065)
++..|+++++||+|... ..++... ....+++ .|...++..+.. ..+...+...+......++...
T Consensus 360 vk~~~pd~~ligE~~~~~----~~~l~~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 435 (598)
T PRK10785 360 AKEENPEAYVLGEHFGDA----RQWLQADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQ 435 (598)
T ss_pred HHhhCCCeEEEEeccCCh----hhhccCccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHH
Confidence 11244789999999762 2333321 1122332 244445444421 2456777777777766666543
Q ss_pred c--ccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccC
Q psy15051 861 W--SSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRD 936 (1065)
Q Consensus 861 ~--~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd 936 (1065)
. ..+|++|||++|+++.++. .++++|++++||+||+||||||||+||.+. .||.
T Consensus 436 ~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~-------~dp~--------------- 493 (598)
T PRK10785 436 QLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGG-------NDPF--------------- 493 (598)
T ss_pred HHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCC-------CCCC---------------
Confidence 2 3358999999999998863 578899999999999999999999999885 2443
Q ss_pred CCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEE
Q psy15051 937 GSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR 1016 (1065)
Q Consensus 937 ~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R 1016 (1065)
+|.+|+|+... ...+++++||+|++|||++|+|+.|+++.+..++++++|.|
T Consensus 494 -~R~~m~W~~~~---------------------------~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R 545 (598)
T PRK10785 494 -CRKPFPWDEAK---------------------------QDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFAR 545 (598)
T ss_pred -ccCCcCCCccc---------------------------CchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEE
Confidence 78999998632 13579999999999999999999999999988889999999
Q ss_pred EcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1017 TEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1017 ~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
..+++.++||+|++ +.+++.|+.
T Consensus 546 ~~~~~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 546 VLQQQRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred ECCCCEEEEEEECC-CCeEEeccc
Confidence 99999999999999 677888874
|
|
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=471.68 Aligned_cols=364 Identities=19% Similarity=0.287 Sum_probs=244.3
Q ss_pred ccCChhhcccceEEEEecccccCcCCCCC---CCC-CCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC--
Q psy15051 550 RCNQKEWWKNTVIYQILVPSFKDSNNDGI---GDL-RGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-- 623 (1065)
Q Consensus 550 ~~~~~~ww~~~vIYei~v~~F~d~~~d~~---Gdl-~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-- 623 (1065)
..+++.||+++|||||+||||.+|+..+- |.- .|....+.|+||++ +||+++|||||+||||+|||+||+++.
T Consensus 180 ~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl-~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~ 258 (683)
T PRK09505 180 EAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDL-RGLTEKLDYLQQLGVNALWISSPLEQIHG 258 (683)
T ss_pred CCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCH-HHHHHhhHHHHHcCCCEEEeCcccccccc
Confidence 34568899999999999999999884321 110 11223467999988 899999999999999999999999873
Q ss_pred ------------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccc
Q psy15051 624 ------------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIH 691 (1065)
Q Consensus 624 ------------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~ 691 (1065)
..+|||++.||+.|||+|||++|||+||++|
T Consensus 259 ~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~a------------------------------------- 301 (683)
T PRK09505 259 WVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEA------------------------------------- 301 (683)
T ss_pred ccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHH-------------------------------------
Confidence 2569999999999999999999999999999
Q ss_pred ccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC------chhhHhhh----c-c---CCCCCccee
Q psy15051 692 SVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK------HDWFIKSA----Q-K---IDPYTNYYV 757 (1065)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~------~~wf~~~~----~-~---~~~~~d~y~ 757 (1065)
|++||+||+|+|+||++.. +.+|.... . . .+.|.+|+-
T Consensus 302 ----------------------------H~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~ 353 (683)
T PRK09505 302 ----------------------------HQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQP 353 (683)
T ss_pred ----------------------------HHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccc
Confidence 5555555555555555531 12222210 0 0 111111110
Q ss_pred --------------ecCC---------------CC---------------CCCCCCCCC--------Ccc----c---cC
Q psy15051 758 --------------WKDG---------------LN---------------GKPGTPPNN--------WKH----I---NI 778 (1065)
Q Consensus 758 --------------~~~~---------------~d---------------G~p~~~~~~--------W~~----l---n~ 778 (1065)
+.+. .. +.|.+...+ |.. + +.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~ 433 (683)
T PRK09505 354 AAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAI 433 (683)
T ss_pred cccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccc
Confidence 0000 00 000000000 000 1 23
Q ss_pred CCHHHHHHHHHHHHh---------------------------------------cCC-------ceEEEeecCCCChHHH
Q psy15051 779 TSREVMRSQKDVVQS---------------------------------------FPL-------ILMIITEAYSPSLEKV 812 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~---------------------------------------~~~-------~~~ligE~~~~~~~~~ 812 (1065)
.|++|+++|.++++. .++ +++++||+|+.++. .
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~-~ 512 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVM-K 512 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchh-h
Confidence 467999999987321 111 37999999986443 3
Q ss_pred hhhccCCCCccccccccHHHHHHhhcCC-ChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH-HHHHHHHHHH
Q psy15051 813 AKYYGTGDTQGTHLSVNYEIMNKFGATS-NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP-DLVDAMNMLT 890 (1065)
Q Consensus 813 ~~y~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~-~~~kla~~ll 890 (1065)
..|++ .++|.+++|.+........ ....+...........+.. ....|++|||++|+.+..+. .+++++++++
T Consensus 513 ~~y~~----~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~FLdNHDt~Rf~s~~~~~~~~klAaall 587 (683)
T PRK09505 513 SDYYR----HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDF-NVLSYLSSHDTRLFFEGGQSYAKQRRAAELL 587 (683)
T ss_pred HHHHh----hcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-ceeecccCCChhhhhhhcCchHHHHHHHHHH
Confidence 45554 4588888888775432111 1122222232222222221 12349999999999998764 4788999999
Q ss_pred HhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccH
Q psy15051 891 LLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970 (1065)
Q Consensus 891 ~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~ 970 (1065)
||+||+|+||||||+||.+.. ...||. ..+|.+|+|+...
T Consensus 588 ~tlpGiP~IYYGdEiGm~gg~----~g~DP~--------------~~~R~~M~W~~~~---------------------- 627 (683)
T PRK09505 588 LLAPGAVQIYYGDESARPFGP----TGSDPL--------------QGTRSDMNWQEVS---------------------- 627 (683)
T ss_pred HhCCCCcEEEechhhCccCCC----CCCCCc--------------ccccccCCccccc----------------------
Confidence 999999999999999998752 112332 1378999998521
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECC
Q psy15051 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLN 1030 (1065)
Q Consensus 971 ~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s 1030 (1065)
....+++++||+|++||+++|||+.|+++.+. ++++++|.|..+++++|||+|-.
T Consensus 628 ----~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~~ 682 (683)
T PRK09505 628 ----GKSAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAGQ 682 (683)
T ss_pred ----cchHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeCC
Confidence 12346999999999999999999999998874 56799999999999999999854
|
|
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=436.52 Aligned_cols=243 Identities=11% Similarity=0.063 Sum_probs=174.4
Q ss_pred EEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCC
Q psy15051 35 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISR 114 (1065)
Q Consensus 35 qi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~ 114 (1065)
+|.+.+|.|++++|.|||+|+++| ||+ + ||+ ++|+. |+|.++ .++|| +|.+
T Consensus 2 ~v~lity~Ds~g~glgdl~g~l~~--yL~-~-~v~---------------~i~Ll-Pffps~-sD~GY--------dv~D 52 (470)
T TIGR03852 2 KAMLITYADSLGKNLKELNKVLEN--YFK-D-AVG---------------GVHLL-PFFPST-GDRGF--------APMD 52 (470)
T ss_pred CceEEEecCCCCCChhhHHHHHHH--HHH-H-hCC---------------EEEEC-CCCcCC-CCCCc--------Cchh
Confidence 366788999999999999999999 999 7 799 66666 888888 49999 6666
Q ss_pred CccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCc
Q psy15051 115 LPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV 194 (1065)
Q Consensus 115 ~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~ 194 (1065)
| ++|||+||||+||++|++ .|+|| +|+ |+|||| .+|+|||+...
T Consensus 53 Y-------~~VDP~~Gt~~Df~~L~~----~~kvm--------lDl-------V~NHtS----------~~h~WFq~~~~ 96 (470)
T TIGR03852 53 Y-------TEVDPAFGDWSDVEALSE----KYYLM--------FDF-------MINHIS----------RQSEYYQDFLE 96 (470)
T ss_pred h-------ceeCcccCCHHHHHHHHH----hhhHH--------hhh-------cccccc----------cchHHHHHHHh
Confidence 6 666679999999999999 49999 665 777765 66666665321
Q ss_pred ceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc--ccccccccCCc--ch---h-----hhccc
Q psy15051 195 NLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY--WGDILERTVSS--NS---L-----QALQR 262 (1065)
Q Consensus 195 ~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~---~-----~~~~~ 262 (1065)
+ .++.+|.++| |.+.|....+. ++ + .++..
T Consensus 97 ~--------------------------------------~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~ 138 (470)
T TIGR03852 97 K--------------------------------------KDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQE 138 (470)
T ss_pred c--------------------------------------CCCCCccceEEecccccCCCCccccccccccCCCCCCCCCc
Confidence 1 0023334444 22212111000 00 0 00011
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH
Q psy15051 263 VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL 342 (1065)
Q Consensus 263 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1065)
+-..+...+++||+|. ++||||||+||.|+ ++|.
T Consensus 139 ~~~~~~~~~~~w~tF~-------------------~~QpDLN~~np~v~---------------------------e~i~ 172 (470)
T TIGR03852 139 VTFADGSTEKVWNTFG-------------------EEQIDLDVTSETTK---------------------------RFIR 172 (470)
T ss_pred eEEcCCCCeEEEccCC-------------------ccccccCCCCHHHH---------------------------HHHH
Confidence 1111223356699998 89999999999996 8899
Q ss_pred HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCc-hhHHHHHHHHHHHHHhhCCccCC
Q psy15051 343 CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQ-PETYEMLYKWRTLVEKFGNQSAD 421 (1065)
Q Consensus 343 ~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~r~~~d~~~~~~~~ 421 (1065)
++++||+++||||||+|||+||||..+ + .|.+. ||+|++|+++|+++.. ++..++
T Consensus 173 ~il~fwl~~GvdgfRLDAv~~l~K~~G------------t-----------~c~~l~pet~~~l~~~r~~~~~-~~~~ll 228 (470)
T TIGR03852 173 DNLENLAEHGASIIRLDAFAYAVKKLG------------T-----------NDFFVEPEIWELLDEVRDILAP-TGAEIL 228 (470)
T ss_pred HHHHHHHHcCCCEEEEecchhhcccCC------------C-----------CcccCChhHHHHHHHHHHHhcc-CCCEEE
Confidence 999999999999999999999999643 1 18776 9999999999998844 599999
Q ss_pred CCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH
Q psy15051 422 RQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV 470 (1065)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~ 470 (1065)
||+. ++++++ ++.++|+||+|+|.|++++
T Consensus 229 ~E~~----~~~~~~----------------~~~gde~~mvY~F~lppl~ 257 (470)
T TIGR03852 229 PEIH----EHYTIQ----------------FKIAEHGYYVYDFALPMLV 257 (470)
T ss_pred eHhh----hhcccc----------------cccccceeEEccCccchhh
Confidence 9992 233322 2323689999999999983
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PRK10933 trehalose-6-phosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=457.23 Aligned_cols=310 Identities=23% Similarity=0.318 Sum_probs=227.2
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.|+||+++||||||||||+|++++|.|||+||++|||||+ +|||| ++|++ |++.++..+|||
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~-~lGv~---------------~i~l~-P~~~~~~~~~gY- 65 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQ-KLGVD---------------AIWLT-PFYVSPQVDNGY- 65 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHH-hCCCC---------------EEEEC-CCCCCCCCCCCC-
Confidence 4689999999999999999999999999999999999999 99999 55555 777777778999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| +.|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 66 -------~~~d~-------~~id~~~Gt~~d~~~lv~~~h~~gi~vi--------lD~-------V~NH~s--------- 107 (551)
T PRK10933 66 -------DVANY-------TAIDPTYGTLDDFDELVAQAKSRGIRII--------LDM-------VFNHTS--------- 107 (551)
T ss_pred -------CcccC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCcc---------
Confidence 66666 677779999999999997 799999999 777 788865
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ 261 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (1065)
.+|+||+.... .+.||.++| |.+......+++|...++
T Consensus 108 -~~~~wf~~~~~----------------------------------------~~~~y~d~y~~~~~~~~~~~~~~~~~~~ 146 (551)
T PRK10933 108 -TQHAWFREALN----------------------------------------KESPYRQFYIWRDGEPETPPNNWRSKFG 146 (551)
T ss_pred -CchhHHHhhcC----------------------------------------CCCCCcCceEecCCCCCCCCCcccccCC
Confidence 66677765321 112222222 221111111111111110
Q ss_pred --ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 262 --RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 262 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
.+...+....+++|.|. +.|||||++||+|+ +
T Consensus 147 ~~~w~~~~~~~~~y~~~f~-------------------~~~pdLn~~np~V~---------------------------~ 180 (551)
T PRK10933 147 GSAWRWHAESEQYYLHLFA-------------------PEQADLNWENPAVR---------------------------A 180 (551)
T ss_pred CccccccCCCCceEeeccc-------------------ccCCccCCCCHHHH---------------------------H
Confidence 01111223344589998 79999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||++.||||||+|||++|.+..+|++++... .+.++.++|++|++++++|+.+...++..
T Consensus 181 ~l~~~~~~W~~~GvDGfRlDa~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (551)
T PRK10933 181 ELKKVCEFWADRGVDGLRLDVVNLISKDQDFPDDLDGD-------------GRRFYTDGPRAHEFLQEMNRDVFTPRGLM 247 (551)
T ss_pred HHHHHHHHHHHCCCcEEEEcchhhcCcCCCCCCCcccc-------------cccccCCChHHHHHHHHHHHHhhcccCcE
Confidence 99999999999999999999999999988887755321 12356789999999999987554444677
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHHHhcCc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFIYCGIV 480 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~Wq~~m~ 480 (1065)
+|||.+....+... ++. +..+++++|+|||.++.+ . ++..||..|.
T Consensus 248 ~vgE~~~~~~~~~~--------------~y~-~~~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (551)
T PRK10933 248 TVGEMSSTSLEHCQ--------------RYA-ALTGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH 312 (551)
T ss_pred EEEeecCCCHHHHH--------------Hhh-cccCCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhc
Confidence 89998543322111 111 122356788888876421 1 5789999998
Q ss_pred CCcccchhhcccCccccchhhhhh
Q psy15051 481 DDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 481 ~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...+..+++.|||++|++||++++
T Consensus 313 ~~~~~~~fl~NHD~~R~~sr~g~~ 336 (551)
T PRK10933 313 NVAWNALFWCNHDQPRIVSRFGDE 336 (551)
T ss_pred ccCeeccccCCCCcccHHHHcCCc
Confidence 888888899999999999999965
|
|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=439.11 Aligned_cols=350 Identities=22% Similarity=0.328 Sum_probs=237.2
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
++++||||+|+++|+. .|+|+ ||+++|||||+||||+||||||++++. .+|||++.||+
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~---------------gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~ 150 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFD---------------AAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPY 150 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHH---------------HHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcc
Confidence 7899999999999976 58999 999999999999999999999999874 46999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++|
T Consensus 151 ~~~~~~G~~~e~k~lV~~a------------------------------------------------------------- 169 (542)
T TIGR02402 151 APHNAYGGPDDLKALVDAA------------------------------------------------------------- 169 (542)
T ss_pred ccccccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccCCCH---HHHHHHHHH-
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INITSR---EVMRSQKDV- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~~n~---~v~~~l~~~- 790 (1065)
|++||+||||+|+||++.++.++.. +..||... ..+.|+. +|+.++ +|+++|.++
T Consensus 170 ----H~~Gi~VilD~V~NH~~~~~~~~~~-------~~~y~~~~---------~~~~wg~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 170 ----HGLGLGVILDVVYNHFGPEGNYLPR-------YAPYFTDR---------YSTPWGAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred ----HHCCCEEEEEEccCCCCCccccccc-------cCccccCC---------CCCCCCCccccCCCcHHHHHHHHHHHH
Confidence 5566666666666666655443322 11222100 1123333 666666 666666654
Q ss_pred -----------------------------------HHhcCCc---eEEEeecCCCChHHHhhhccCCCCccccccccHHH
Q psy15051 791 -----------------------------------VQSFPLI---LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI 832 (1065)
Q Consensus 791 -----------------------------------lk~~~~~---~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~ 832 (1065)
+++..|+ +++|||.+...+......... ..+++..++..+
T Consensus 230 ~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~--~~~~d~~~~~~~ 307 (542)
T TIGR02402 230 LYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDG--GYGLDAQWNDDF 307 (542)
T ss_pred HHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCC--ccceEEEECchH
Confidence 4445567 999999986544322211111 244677777766
Q ss_pred HHHhhcCC-------------ChHHHHHHHHHHhhc-------------CC----CCCcccccccCCCh-------hhHh
Q psy15051 833 MNKFGATS-------------NAKDLENVVNAYLKS-------------LP----SGKWSSWMVGGHSI-------TRIA 875 (1065)
Q Consensus 833 ~~~~~~~~-------------~~~~l~~~l~~~~~~-------------~~----~~~~~~~flenHD~-------~Rl~ 875 (1065)
+..+.... +...+.+.+..-... .+ .....++|++|||+ .|++
T Consensus 308 ~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~ 387 (542)
T TIGR02402 308 HHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLS 387 (542)
T ss_pred HHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhh
Confidence 66552211 233444444321000 00 11234569999997 7999
Q ss_pred hhcCHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccc----ccccccc------CC------CC
Q psy15051 876 TRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKD----NYLKVCR------DG------SR 939 (1065)
Q Consensus 876 s~~~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~----~~~~~~r------d~------~R 939 (1065)
..++.++++++++++||+||+||||||||+|+.+++..++++.|++......+ ++...++ |+ +|
T Consensus 388 ~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~ 467 (542)
T TIGR02402 388 QLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLR 467 (542)
T ss_pred hcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhh
Confidence 98888899999999999999999999999999998766666655432110000 0000000 00 23
Q ss_pred CcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc----cCCcEEEEE
Q psy15051 940 VPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST----PNNYVFILT 1015 (1065)
Q Consensus 940 ~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~----~~~~viaf~ 1015 (1065)
.+++|+... .....+++++||+||+|||++++|+.+....+. .++.++++.
T Consensus 468 ~~~~W~~~~-------------------------~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~ 522 (542)
T TIGR02402 468 SKLDWAEAE-------------------------SGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVR 522 (542)
T ss_pred ccCCccccc-------------------------ccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEE
Confidence 445554321 112457999999999999999999887754433 345688877
Q ss_pred EEcCCcEEEEEEECCCCcEEE
Q psy15051 1016 RTEGSTSVYLIINLNSRTETV 1036 (1065)
Q Consensus 1016 R~~~~~~vlVv~N~s~~~~~v 1036 (1065)
.++++++|++|++++++++
T Consensus 523 --~~~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 523 --FGRGELVLAANLSTSPVAV 541 (542)
T ss_pred --ECCCeEEEEEeCCCCCcCC
Confidence 4667899999999987654
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >KOG0471|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=435.30 Aligned_cols=396 Identities=34% Similarity=0.681 Sum_probs=319.7
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.++||+++++|||+|++|+++++++.|+++ ||++||||||+||||+|||+||++++..++||++.
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~---------------GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~ 75 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLK---------------GITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDAS 75 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccc---------------cchhhhhHHHhcCCceEEeCCCcCCCHHHhccCcc
Confidence 689999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||+.|+|+|||+|||++||+++
T Consensus 76 d~~~l~p~fGt~edf~~Li~~~---------------------------------------------------------- 97 (545)
T KOG0471|consen 76 DLEQLRPRFGTEEDFKELILAM---------------------------------------------------------- 97 (545)
T ss_pred chhhhcccccHHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---CCCCCCCCCCCcc--------------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---NGKPGTPPNNWKH-------------- 775 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---dG~p~~~~~~W~~-------------- 775 (1065)
|++||++|+|+|+||++..|+||......+..|.+||.|..+. .|. +.+|.+|.+
T Consensus 98 -------h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~-~~~p~nw~~~~~~s~~~~~e~~~ 169 (545)
T KOG0471|consen 98 -------HKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGK-RIPPLNWLSVFGGSAWPFDEGRQ 169 (545)
T ss_pred -------hhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccC-CCCccchHhhhccccCccccccc
Confidence 9999999999999999999999999887766699999998765 455 666666654
Q ss_pred -------------ccCCCHHHHHHHHHHHHhc-----------------CC----------ceEEEeecCCCChHHHhhh
Q psy15051 776 -------------INITSREVMRSQKDVVQSF-----------------PL----------ILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 776 -------------ln~~n~~v~~~l~~~lk~~-----------------~~----------~~~ligE~~~~~~~~~~~y 815 (1065)
+|++||+|++.|.++++.+ .. ..+-.||.+...+.....+
T Consensus 170 ~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~gvdGfRiD~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 249 (545)
T KOG0471|consen 170 KYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKGVDGFRIDAVKGYAGENFKNMWPDEPVFDVGEKLQDDNYVAYQY 249 (545)
T ss_pred ceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEcccccccccccccccCCCcccceeEecCcchhhccc
Confidence 9999999999999997620 00 2444555443322111111
Q ss_pred ccC--------------------------------------------------CC-CccccccccHHHHHHhhcCCChHH
Q psy15051 816 YGT--------------------------------------------------GD-TQGTHLSVNYEIMNKFGATSNAKD 844 (1065)
Q Consensus 816 ~~~--------------------------------------------------~~-~~~~d~~~~~~~~~~~~~~~~~~~ 844 (1065)
... .. ..+-+.++.+.....+... .+..
T Consensus 250 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~-~~~~ 328 (545)
T KOG0471|consen 250 NDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLT-VASI 328 (545)
T ss_pred ccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhcc-chHH
Confidence 000 00 0000111111111111111 2355
Q ss_pred HHHHHHHHhhcCC-CCCcccccccCCChhhHhhhcCHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccc
Q psy15051 845 LENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGY 923 (1065)
Q Consensus 845 l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~ 923 (1065)
+...+..++...+ ...+..|.++|||+.|++++++....+++.++++++||+|++|+|+|+|+....+..++..+|..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~ 408 (545)
T KOG0471|consen 329 YKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLM 408 (545)
T ss_pred HHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHh
Confidence 6777777777776 477888999999999999999999999999999999999999999999999864445555555422
Q ss_pred ccccccccccccCCCCCcCCCCcccccCCCCC-CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe
Q psy15051 924 IFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002 (1065)
Q Consensus 924 ~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~-~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~ 1002 (1065)
+ .|.+|+|+...++||+.+ ++|++++.++..+|+..+...+++++..++++..+|+....+..|..
T Consensus 409 ~-------------~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~ 475 (545)
T KOG0471|consen 409 Q-------------SRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSF 475 (545)
T ss_pred c-------------cCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccce
Confidence 2 289999999889999966 99999999998899999999999999999999999999977888888
Q ss_pred EEEccCCcEEEEEEE-cCCcEEEEEEECCCCcEEEEcCCCcc
Q psy15051 1003 KISTPNNYVFILTRT-EGSTSVYLIINLNSRTETVDLSDCIE 1043 (1065)
Q Consensus 1003 ~~l~~~~~viaf~R~-~~~~~vlVv~N~s~~~~~v~l~~~~~ 1043 (1065)
.....++.+++|.|. .+.+.+++++|+++.++...+....+
T Consensus 476 ~~~~~~~~if~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (545)
T KOG0471|consen 476 VLFAATPGLFSFSRNWDGNERFIAVLNFGDSPLSLNLTDLDS 517 (545)
T ss_pred eeecCCCceEEEEeccCCCceEEEEEecCCcccccccccccc
Confidence 887888899999999 56688999999999988888776544
|
|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=442.85 Aligned_cols=379 Identities=18% Similarity=0.237 Sum_probs=255.6
Q ss_pred cccceEEEEecccccCcCCCC---CCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDG---IGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~---~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
++++||||+|+++|+..++++ .|+|.|-...+.. .-+|++++|||||+||||+||||||+++++
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~----~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~ 200 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTK----GPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNA 200 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCcc----ccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCC
Confidence 567899999999999765544 3555521111110 003778889999999999999999999864
Q ss_pred CCCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccC
Q psy15051 625 GDIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLN 696 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 696 (1065)
..|||++.||++|+++||+ ++|||+||++|
T Consensus 201 ~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~------------------------------------------ 238 (605)
T TIGR02104 201 YNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL------------------------------------------ 238 (605)
T ss_pred CCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH------------------------------------------
Confidence 2499999999999999987 59999999999
Q ss_pred ccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCC-CchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 697 PVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSN-KHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~-~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+||++. .+..|+.. .+.||+.... +|. .....+|..
T Consensus 239 -----------------------H~~Gi~VilDvV~NH~~~~~~~~f~~~------~~~~~~~~~~-~g~-~~~~~g~~~ 287 (605)
T TIGR02104 239 -----------------------HENGIRVIMDVVYNHTYSREESPFEKT------VPGYYYRYNE-DGT-LSNGTGVGN 287 (605)
T ss_pred -----------------------HHCCCEEEEEEEcCCccCCCCCcccCC------CCCeeEEECC-CCC-ccCCCcccC
Confidence 888888888888888863 33444331 1234443222 232 111222222
Q ss_pred -ccCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHHHhhhccC-CCC
Q psy15051 776 -INITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEKVAKYYGT-GDT 821 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~~~~y~~~-~~~ 821 (1065)
+++.+|+|+++|.+++ +...|+++++||.|............. +..
T Consensus 288 ~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~ 367 (605)
T TIGR02104 288 DTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANA 367 (605)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhcc
Confidence 8888999999888872 234568999999998643211100000 000
Q ss_pred c--cccccccHHHHHHhhcC--------------CChHHHHHHHHHHh------hcCCCCCcccccccCCChhhHhhhcC
Q psy15051 822 Q--GTHLSVNYEIMNKFGAT--------------SNAKDLENVVNAYL------KSLPSGKWSSWMVGGHSITRIATRYS 879 (1065)
Q Consensus 822 ~--~~d~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~~------~~~~~~~~~~~flenHD~~Rl~s~~~ 879 (1065)
. .-...|++.+++++.+. .....+...+.... .........++|++|||+.|+.+++.
T Consensus 368 ~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~ 447 (605)
T TIGR02104 368 YQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS 447 (605)
T ss_pred CCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH
Confidence 0 01234666666655421 11222322222110 11122234556999999999876642
Q ss_pred -----------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCccc
Q psy15051 880 -----------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQE 948 (1065)
Q Consensus 880 -----------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~ 948 (1065)
.++.|++++++||+||+||||||||+|+.+.. ++. .++++.++.+|+|+...
T Consensus 448 ~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g-------~~n----------~y~~~d~~~~ldW~~~~ 510 (605)
T TIGR02104 448 LANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQG-------DEN----------SYNSPDSINQLDWDRKA 510 (605)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCC-------CCC----------CccCCCcccccCccccc
Confidence 24788999999999999999999999998642 111 12233367889997532
Q ss_pred ccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEE-------Ec-cCCcEEEEEEEcCC
Q psy15051 949 NAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI-------ST-PNNYVFILTRTEGS 1020 (1065)
Q Consensus 949 ~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~-------l~-~~~~viaf~R~~~~ 1020 (1065)
....+++++|+|++|||++|+|+.|++.. +. .++.+++|.|....
T Consensus 511 ---------------------------~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~ 563 (605)
T TIGR02104 511 ---------------------------TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHA 563 (605)
T ss_pred ---------------------------cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCc
Confidence 12469999999999999999999887532 22 24579999998533
Q ss_pred -----cEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1021 -----TSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1021 -----~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+.++|++|+++++++++++. ++.+++++++..+++.
T Consensus 564 ~~~~~~~llVv~N~s~~~~~v~lp~----~~~w~~~~~~~~~~~~ 604 (605)
T TIGR02104 564 NGDPWKDIIVIHNANPEPVDIQLPS----DGTWNVVVDNKNAGSK 604 (605)
T ss_pred CCCCcCeEEEEEeCCCCCeEEECCC----CCCEEEEECCCcCCCC
Confidence 47999999999999999874 4789999998887764
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=441.70 Aligned_cols=306 Identities=23% Similarity=0.328 Sum_probs=225.0
Q ss_pred hhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
||+++|||||+||||++++++|.|||+||++||+||+ +|||+ ++|++ |++.++..++||
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~-~lG~~---------------~i~l~-Pi~~~~~~~~gY---- 59 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLK-KLGVD---------------YIWLN-PFYVSPQKDNGY---- 59 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHH-HcCCC---------------EEEEC-CcccCCCCCCCC----
Confidence 9999999999999999999999999999999999999 99999 56666 778777778899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ .+
T Consensus 60 ----~~~d~-------~~id~~~Gt~~~~~~lv~~ah~~gi~vi--------lD~-------v~NH~~----------~~ 103 (543)
T TIGR02403 60 ----DVSDY-------YAINPLFGTMADFEELVSEAKKRNIKIM--------LDM-------VFNHTS----------TE 103 (543)
T ss_pred ----Ccccc-------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc----------cc
Confidence 66666 677779999999999997 799999999 777 888865 66
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc--c
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ--R 262 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 262 (1065)
|+||++...+ ..+|.++| |.+.. ...+.+|...++ .
T Consensus 104 ~~~f~~~~~~----------------------------------------~~~y~~~y~~~~~~-~~~~~~~~~~~~~~~ 142 (543)
T TIGR02403 104 HEWFKKALAG----------------------------------------DSPYRDFYIWRDPK-GKPPTNWQSKFGGSA 142 (543)
T ss_pred hHHHHHhhcC----------------------------------------CCcccCceEecCCC-CCCCCcccccCCCcC
Confidence 7777654211 12222222 22111 011111111000 0
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH
Q psy15051 263 VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL 342 (1065)
Q Consensus 263 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1065)
+-..+...+++++.|. ..|||||++||+|+ ++|+
T Consensus 143 w~~~~~~~~~y~~~f~-------------------~~~pdln~~np~v~---------------------------~~i~ 176 (543)
T TIGR02403 143 WEYFGDTGQYYLHLFD-------------------KTQADLNWENPEVR---------------------------EELK 176 (543)
T ss_pred ccccCCCCceEEeccC-------------------CcCCccCCCCHHHH---------------------------HHHH
Confidence 1111223445599999 79999999999997 8999
Q ss_pred HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCC
Q psy15051 343 CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADR 422 (1065)
Q Consensus 343 ~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~ 422 (1065)
++++||+++||||||||||++|.+...++|+|... ...++.++|++|+|++++|+.+...++..+||
T Consensus 177 ~~~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvg 243 (543)
T TIGR02403 177 DVVNFWRDKGVDGFRLDVINLISKDQFFEDDEIGD-------------GRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVG 243 (543)
T ss_pred HHHHHHHHcCCCEEEEeeehhhccCcccCCCCCCC-------------CccccCCChHHHHHHHHHHHHhhccCCeEEEE
Confidence 99999999999999999999999988788776421 12346688999999999998876678899999
Q ss_pred CCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHHHhcCc-CC
Q psy15051 423 QPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFIYCGIV-DD 482 (1065)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~Wq~~m~-~~ 482 (1065)
|........... | . +..+.+++++|||.++.. . ++..|+..++ ..
T Consensus 244 E~~~~~~~~~~~------y--------~-~~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (543)
T TIGR02403 244 EMSSTTIENCIR------Y--------S-NPENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGG 308 (543)
T ss_pred EeCCCCHHHHHh------h--------h-CCCCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccC
Confidence 986543321110 1 1 222356788888875421 1 5677988887 44
Q ss_pred cccchhhcccCccccchhhhhh
Q psy15051 483 TSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 483 ~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..++++|||++|.++|++++
T Consensus 309 ~~~~~fl~NHD~~R~~s~~g~~ 330 (543)
T TIGR02403 309 GWNALFWNNHDQPRAVSRFGDD 330 (543)
T ss_pred cceeeecCCCChhhHHHhcCCc
Confidence 4555567999999999999965
|
Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. |
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=410.43 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=171.1
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhh-hhHhhhCCCCcCCCCCCCCCcceeeecccCccc-cccccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR-YLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL-TTAVKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~-yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~-~~~~~~~gy~~~v 106 (1065)
++.|+.-.|++|+. .|||+||+++|| ||+ +| |+ ++|+. |.| .++..++||
T Consensus 2 ~n~~~litY~Ds~~------~GdL~gl~~kLd~yL~-~l-v~---------------~vhll-Pff~psp~sD~GY---- 53 (495)
T PRK13840 2 KNKVQLITYADRLG------DGGLKSLTALLDGRLD-GL-FG---------------GVHIL-PFFYPIDGADAGF---- 53 (495)
T ss_pred CCceEEEEeccCCC------CCCHhHHHHHHHHHHH-HH-hC---------------eEEEC-CCccCCCCCCCCC----
Confidence 45677777777774 279999999999 599 99 99 45555 777 456789999
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
+|.+| ++|||+||||+||++|++ ||+|| +|+ |+||+| .+|
T Consensus 54 ----dv~DY-------~~VDP~fGt~eDf~~L~~----giklm--------lDl-------V~NHtS----------~~h 93 (495)
T PRK13840 54 ----DPIDH-------TKVDPRLGDWDDVKALGK----THDIM--------ADL-------IVNHMS----------AES 93 (495)
T ss_pred ----CCcCh-------hhcCcccCCHHHHHHHHh----CCeEE--------EEE-------CCCcCC----------CCc
Confidence 66666 677779999999999998 99999 776 777765 666
Q ss_pred ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-cccc-cc-ccCCcchhhhc---
Q psy15051 187 FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDI-LE-RTVSSNSLQAL--- 260 (1065)
Q Consensus 187 ~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~--- 260 (1065)
+|||+... ..++.+|.++| |.+. +. +..+.++.+.+
T Consensus 94 ~WFqd~l~--------------------------------------~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~ 135 (495)
T PRK13840 94 PQFQDVLA--------------------------------------KGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPR 135 (495)
T ss_pred HHHHHHHH--------------------------------------hCCCCCccCeEEECCCCCcCCCCCcccccccCCC
Confidence 67666311 01123334444 2221 10 01111111111
Q ss_pred -----cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhh
Q psy15051 261 -----QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFC 335 (1065)
Q Consensus 261 -----~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
..+...+...+++||+|. ++||||||+||+|+
T Consensus 136 ~g~~~~~~~~~~~~~~~~w~tF~-------------------~~QpDLN~~NP~V~------------------------ 172 (495)
T PRK13840 136 PGLPFTTYTLADGKTRLVWTTFT-------------------PQQIDIDVHSAAGW------------------------ 172 (495)
T ss_pred CCCcccceEecCCCceEEeccCC-------------------cccceeCCCCHHHH------------------------
Confidence 001011223345688888 79999999999997
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 336 YEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 336 ~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
++|+++++||+++||||||+|||+|+||+.+ + .|.++||+|+|+++||++++.+
T Consensus 173 ---~~i~~il~fwl~~GVDgfRLDAv~~l~K~~g------------t-----------~c~~~pe~~~~l~~lr~~~~~~ 226 (495)
T PRK13840 173 ---EYLMSILDRFAASHVTLIRLDAAGYAIKKAG------------T-----------SCFMIPETFEFIDRLAKEARAR 226 (495)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEechhhhhcCCC------------C-----------CcCCChHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999642 1 2889999999999999999877
Q ss_pred CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH
Q psy15051 416 GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ 469 (1065)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~ 469 (1065)
+..+|+|. .+ |||... .-.+|+||+|||.|+++
T Consensus 227 -~~~ll~Ei-------~~-------y~~~~~------~~~~e~~~vYnF~Lp~l 259 (495)
T PRK13840 227 -GMEVLVEI-------HS-------YYKTQI------EIAKKVDRVYDFALPPL 259 (495)
T ss_pred -CCEEEEeC-------cc-------ccCccc------cccccccEEecchhhHH
Confidence 55566653 23 333200 01248999999999887
|
|
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=431.03 Aligned_cols=362 Identities=16% Similarity=0.212 Sum_probs=237.7
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
..+..+|||||+++|++++.++.|+|+ ||+++| ||||+||||+||||||++++. .+|||++.|
T Consensus 144 ~~~~~~iYe~hv~~f~~~~~~~~g~~~---------------~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~ 208 (633)
T PRK12313 144 LDRPISIYEVHLGSWKRNEDGRPLSYR---------------ELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTG 208 (633)
T ss_pred CCCCceEEEEehhccccCCCCCccCHH---------------HHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcC
Confidence 346789999999999987777789999 999995 999999999999999999975 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+|+|||++|||+||++||++||+||||+|+
T Consensus 209 y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~---------------------------------------------- 242 (633)
T PRK12313 209 YFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVP---------------------------------------------- 242 (633)
T ss_pred cCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC----------------------------------------------
Confidence 9999999999999999999995555555555554
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhh----------------------------------HhhhccCCCCCcceeec
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWF----------------------------------IKSAQKIDPYTNYYVWK 759 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf----------------------------------~~~~~~~~~~~d~y~~~ 759 (1065)
||++.++..+ ++.+.. .-.||+..
T Consensus 243 -------------------nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~---~~~~W~~~ 300 (633)
T PRK12313 243 -------------------GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLIS---SALFWLDE 300 (633)
T ss_pred -------------------CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHH---HHHHHHHH
Confidence 4444332211 110000 00122211
Q ss_pred CCCCCCCCCCCC------------CCcc------ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCC
Q psy15051 760 DGLNGKPGTPPN------------NWKH------INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT 821 (1065)
Q Consensus 760 ~~~dG~p~~~~~------------~W~~------ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~ 821 (1065)
.+.||+ |++.. .|.. -|....++.+.+.+.|++..|++++|||.+...+......... .
T Consensus 301 ~~iDG~-R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~g--g 377 (633)
T PRK12313 301 YHLDGL-RVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVG--G 377 (633)
T ss_pred hCCcEE-EEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCC--C
Confidence 233444 22210 0110 1111234445555555556678999999886544433332222 2
Q ss_pred ccccccccHHHHHHhhc----C-CChHHHHHHHH-HHhhcCCCCCcccccccCCCh-----hhHhhhcCH------HHHH
Q psy15051 822 QGTHLSVNYEIMNKFGA----T-SNAKDLENVVN-AYLKSLPSGKWSSWMVGGHSI-----TRIATRYSP------DLVD 884 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~----~-~~~~~l~~~l~-~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~------~~~k 884 (1065)
.++|+.++..+...+.. . .........+. .....+.. .+ ++++|||+ .|+++++.+ .++|
T Consensus 378 ~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~--~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r 454 (633)
T PRK12313 378 LGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSE-NF--VLPFSHDEVVHGKKSLMHKMPGDRWQQFANLR 454 (633)
T ss_pred CCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhc-cc--ccCCCCcccccCCccHHHhcCCCHHHHHHHHH
Confidence 56788887666653311 1 10000000000 00011111 11 26689999 688888753 3678
Q ss_pred HHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCC
Q psy15051 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964 (1065)
Q Consensus 885 la~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~ 964 (1065)
++++++||+||+||||||+|+|+.+.. + .+.+|+|+....
T Consensus 455 ~~~~~~~t~pG~Plif~G~E~g~~~~~-------~------------------~~~~l~W~~~~~--------------- 494 (633)
T PRK12313 455 LLYTYMITHPGKKLLFMGSEFGQFLEW-------K------------------HDESLEWHLLED--------------- 494 (633)
T ss_pred HHHHHHHhCCCCcEeecccccccCccC-------C------------------ccCCCCccccCC---------------
Confidence 888999999999999999999998752 1 236788875321
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-----CeEEEcc---CCcEEEEEEEc--CCcEEEEEEECCCCcE
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-----DYKISTP---NNYVFILTRTE--GSTSVYLIINLNSRTE 1034 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-----~~~~l~~---~~~viaf~R~~--~~~~vlVv~N~s~~~~ 1034 (1065)
...+.++++||+|++||+++|+|+.| .++++.. +++|+||.|.. +++.++||+|+++.++
T Consensus 495 ----------~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~ 564 (633)
T PRK12313 495 ----------PMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVER 564 (633)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcc
Confidence 11346999999999999999999754 4666654 34699999997 7789999999998654
Q ss_pred E---EEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1035 T---VDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1035 ~---v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+ +.++ .++.++.+++|+...++
T Consensus 565 ~~y~i~~p----~~g~~~~ilnsd~~~yg 589 (633)
T PRK12313 565 EDYRIGVP----VAGIYEEILNTDSEEFG 589 (633)
T ss_pred cceeECCC----CCCeEEEEEcCCchhcC
Confidence 3 3333 25889999998876544
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=423.84 Aligned_cols=368 Identities=20% Similarity=0.275 Sum_probs=254.1
Q ss_pred hcccceEEEEecccccCcCCC----CCCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCCC-----
Q psy15051 556 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGPN----- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d----~~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~~----- 624 (1065)
.|+++|||||||++|++.+++ ..|+|+ ||+++ |||||+||||+||||||+++.+
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~---------------Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~ 216 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYA---------------GLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL 216 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHH---------------HHhccchhHHHHHcCCCEEEECCcccCCcccccc
Confidence 479999999999999975432 246666 99985 9999999999999999999853
Q ss_pred -----CCCCCcCCCCcccCCCC---CCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccC
Q psy15051 625 -----GDIGYDISNHTEVGKDF---GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLN 696 (1065)
Q Consensus 625 -----~~~GY~~~dy~~idp~~---Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 696 (1065)
++|||++.|||+|||+| |+++|||+||++|
T Consensus 217 ~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~------------------------------------------ 254 (688)
T TIGR02100 217 EKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRAL------------------------------------------ 254 (688)
T ss_pred ccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHH------------------------------------------
Confidence 46999999999999999 6799999999999
Q ss_pred ccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh-hhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 697 PVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK-SAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~-~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+||++..+..... ...+. ....||.......+. .....+|+.
T Consensus 255 -----------------------H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~-d~~~yy~~~~~~~~~-~~~~~g~gn 309 (688)
T TIGR02100 255 -----------------------HDAGIEVILDVVYNHTAEGNELGPTLSFRGI-DNASYYRLQPDDKRY-YINDTGTGN 309 (688)
T ss_pred -----------------------HHCCCEEEEEECcCCccCcCCCCCcccccCC-CCCcceEecCCCCce-ecCCCCccc
Confidence 8888888888888888876543211 11111 122444433221122 112223333
Q ss_pred -ccCCCHHHHHHHHHHHHh---------------------------------------cCCceEEEeecCCCChHHHhhh
Q psy15051 776 -INITSREVMRSQKDVVQS---------------------------------------FPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~---------------------------------------~~~~~~ligE~~~~~~~~~~~y 815 (1065)
+|+.+|+|+++|.++++. ..+++++|||.|...+. .+
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~---~~ 386 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPG---GY 386 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCCC---cc
Confidence 999999999999998332 12258999999986321 11
Q ss_pred ccCCCCccccccccHHHHHHh----hc-CCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC-------
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKF----GA-TSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS------- 879 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~------- 879 (1065)
. .+.....-..+|..+++.+ .+ .....++...+......+. .....++|+++||+.|+.+++.
T Consensus 387 ~-~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~ 465 (688)
T TIGR02100 387 Q-VGNFPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRDLVSYNEKHNE 465 (688)
T ss_pred c-ccCCCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHHHHHhhccchh
Confidence 1 1111111133555555544 33 2345566666654332222 2234557999999988777521
Q ss_pred ---------------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccc
Q psy15051 880 ---------------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFG 926 (1065)
Q Consensus 880 ---------------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~ 926 (1065)
.++.|++++++|++||+||||||||+|+++.. ..
T Consensus 466 ~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G-----~~-------- 532 (688)
T TIGR02100 466 ANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQG-----NN-------- 532 (688)
T ss_pred hccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCC-----CC--------
Confidence 12578889999999999999999999999642 01
Q ss_pred cccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe----
Q psy15051 927 KDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY---- 1002 (1065)
Q Consensus 927 ~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~---- 1002 (1065)
+.++++.....|+|+... ..+++++++|+||+|||++|+|+.+++
T Consensus 533 ----n~y~~~~~~~~~dW~~~~---------------------------~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~ 581 (688)
T TIGR02100 533 ----NAYCQDNEIGWVDWSLDE---------------------------GDDELLAFTKKLIALRKAHPVLRRERFFDGR 581 (688)
T ss_pred ----CCccCCCcccccCccccc---------------------------ccHHHHHHHHHHHHHHHhCchhcccccccCC
Confidence 234566566789998532 235799999999999999999987643
Q ss_pred ---------EEEcc-------------CCcEEEEEEEcC--------CcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 1003 ---------KISTP-------------NNYVFILTRTEG--------STSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 1003 ---------~~l~~-------------~~~viaf~R~~~--------~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
.++.. ...+++|..... .+.++|++|.+.+.+++.||.. +..|++++
T Consensus 582 ~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~---~~~w~~~~ 658 (688)
T TIGR02100 582 NEADGLKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGG---GGRWELVL 658 (688)
T ss_pred cccCCCCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCC---CCcEEEEe
Confidence 33321 237899888732 1579999999999999999862 35788888
Q ss_pred ccCC
Q psy15051 1053 SSVN 1056 (1065)
Q Consensus 1053 ~s~~ 1056 (1065)
++..
T Consensus 659 dt~~ 662 (688)
T TIGR02100 659 DTAD 662 (688)
T ss_pred cCCC
Confidence 7753
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=420.18 Aligned_cols=351 Identities=19% Similarity=0.244 Sum_probs=233.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
+.+..+|||+|+++|+. .|+++ ||+++| ||||+||||+||||||++++. .+|||+++|
T Consensus 135 ~~~~~~iYe~hv~~~~~-----~g~~~---------------~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~ 194 (613)
T TIGR01515 135 YEKPVSIYELHLGSWRH-----GLSYR---------------ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTG 194 (613)
T ss_pred ccCCceEEEEehhhccC-----CCCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCccc
Confidence 34568999999999975 38899 999997 999999999999999999974 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+++|||++|||+||++|
T Consensus 195 y~~~~~~~Gt~~dlk~lV~~~----------------------------------------------------------- 215 (613)
T TIGR01515 195 YYAPTSRFGTPDDFMYFVDAC----------------------------------------------------------- 215 (613)
T ss_pred CcccccccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH-
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV- 790 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~- 790 (1065)
|++||+||||+|+||++.++..+... .+ . .+|......++. ...|.. +|+.+++||++|.++
T Consensus 216 ------H~~Gi~VilD~V~NH~~~~~~~~~~~-~~---~-~~y~~~~~~~~~----~~~w~~~~~~~~~~~Vr~~l~~~~ 280 (613)
T TIGR01515 216 ------HQAGIGVILDWVPGHFPKDDHGLAEF-DG---T-PLYEHKDPRDGE----HWDWGTLIFDYGRPEVRNFLVANA 280 (613)
T ss_pred ------HHCCCEEEEEecccCcCCccchhhcc-CC---C-cceeccCCccCc----CCCCCCceecCCCHHHHHHHHHHH
Confidence 55555555555555555443322211 00 0 011111110010 112322 444555555554444
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
|++..|++++|||.+...+......
T Consensus 281 ~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~ 360 (613)
T TIGR01515 281 LYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPT 360 (613)
T ss_pred HHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccc
Confidence 4445668999999876544433333
Q ss_pred ccCCCCccccccccHHHHHHhhcCCChHHHHHHHH------HHhhcCCCCCcccccccCCCh-----hhHhhhcCH----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVN------AYLKSLPSGKWSSWMVGGHSI-----TRIATRYSP---- 880 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~---- 880 (1065)
... ..++|+.+++.+...+..-.....+..... .....+. ..+. +++|||+ .|+..++.+
T Consensus 361 ~~g--g~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~--~~~sHD~~~~g~~~i~~~~~g~~~~ 435 (613)
T TIGR01515 361 DEG--GLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFV--LPLSHDEVVHGKKSLLNKMPGDYWQ 435 (613)
T ss_pred cCC--cCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccc--cCCCCCCcccCcccHHHhCCCchHH
Confidence 332 256888888766654321111111111100 0000111 1112 6789998 678777654
Q ss_pred --HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCC
Q psy15051 881 --DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958 (1065)
Q Consensus 881 --~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~w 958 (1065)
.++|++++++||+||+||||||+|+|+.++. + .+.+|+|+...
T Consensus 436 ~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~-------~------------------~~~~l~W~~~~---------- 480 (613)
T TIGR01515 436 KFANYRALLGYMWAHPGKKLLFMGSEFAQGSEW-------N------------------DTEQLDWHLLS---------- 480 (613)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCC-------C------------------CCccCCCcccc----------
Confidence 3678899999999999999999999997652 0 12578886421
Q ss_pred CCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcC--CcEEEEEEE
Q psy15051 959 LPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEG--STSVYLIIN 1028 (1065)
Q Consensus 959 l~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~--~~~vlVv~N 1028 (1065)
....+.++++||+|++||+++|+|+.|+ ++++.. +++|++|.|+.+ ++.++||+|
T Consensus 481 ---------------~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N 545 (613)
T TIGR01515 481 ---------------FPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICN 545 (613)
T ss_pred ---------------CcccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEe
Confidence 0123569999999999999999997654 444543 457999999964 568999999
Q ss_pred CCCCcEE---EEcCCCccCCCcEEEEEccCCCcC
Q psy15051 1029 LNSRTET---VDLSDCIENGGDVAIFTSSVNSGL 1059 (1065)
Q Consensus 1029 ~s~~~~~---v~l~~~~~~~~~~~v~~~s~~~~~ 1059 (1065)
+++.+.. |.++. +|.++++++|+...+
T Consensus 546 ~~~~~~~~Y~i~~p~----~g~~~~il~Sd~~~~ 575 (613)
T TIGR01515 546 FTPVVRHQYRVGVPQ----PGQYREVLNSDSETY 575 (613)
T ss_pred CCCCCccceEeCCCC----CCeEEEEEeCChhhc
Confidence 9997554 65542 589999999887554
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=427.01 Aligned_cols=395 Identities=15% Similarity=0.166 Sum_probs=234.8
Q ss_pred cccceEEEEecccccCc-CCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCC
Q psy15051 557 WKNTVIYQILVPSFKDS-NNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISN 633 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~-~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~d 633 (1065)
+++++|||+|+++|++. +.++.|+|+ ||+++| ||||+||||+||||||++++. .+|||++.|
T Consensus 239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~---------------~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~ 303 (726)
T PRK05402 239 DAPISIYEVHLGSWRRHEDGGRFLSYR---------------ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTG 303 (726)
T ss_pred cCCcEEEEEehhhhccCCCCCcccCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCccc
Confidence 46789999999999986 555678999 999996 999999999999999999875 469999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+|+|||++|||+||++||++||+||||+|++| .+...... ..+...+.++.. ++.
T Consensus 304 y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH---~~~~~~~~----------~~~~~~~~y~~~---~~~----- 362 (726)
T PRK05402 304 YYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAH---FPKDAHGL----------ARFDGTALYEHA---DPR----- 362 (726)
T ss_pred CCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCccch----------hccCCCcceecc---CCc-----
Confidence 999999999999999999999666665555555532 11110000 000000000000 000
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCC-------------CCcc-----
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPN-------------NWKH----- 775 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~-------------~W~~----- 775 (1065)
..+..+-.. ..+|. .++-.++.+.. .-.||+...+.||+ |++.. .|..
T Consensus 363 ----~~~~~~w~~---~~~n~---~~~~v~~~l~~---~~~~W~~e~~iDG~-R~D~v~~~~~~~~~~~~g~~~~~~~~~ 428 (726)
T PRK05402 363 ----EGEHPDWGT---LIFNY---GRNEVRNFLVA---NALYWLEEFHIDGL-RVDAVASMLYLDYSRKEGEWIPNIYGG 428 (726)
T ss_pred ----CCccCCCCC---ccccC---CCHHHHHHHHH---HHHHHHHHhCCcEE-EECCHHHhhhccccccccccccccccC
Confidence 000000000 00000 01111110000 00122222233454 33210 0110
Q ss_pred -ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHH----Hhh-cCCChHHHHHHH
Q psy15051 776 -INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN----KFG-ATSNAKDLENVV 849 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~----~~~-~~~~~~~l~~~l 849 (1065)
-|....++++.+.+.|++..|++++|||.+...+......... ..++|+.++..++. .+. ...........+
T Consensus 429 ~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~--G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~ 506 (726)
T PRK05402 429 RENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEG--GLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNEL 506 (726)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCC--CCCCCceecCCcchHHHHHHhhCcccccccccch
Confidence 0111234555555556666779999999765433322222222 24577776654433 221 111100000000
Q ss_pred H-HHhhcCCCCCcccccccCCChh-----hHhhhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCC
Q psy15051 850 N-AYLKSLPSGKWSSWMVGGHSIT-----RIATRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQ 917 (1065)
Q Consensus 850 ~-~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~ 917 (1065)
. .....+.. .+ .+++|||+. |+..++++ .++|++++++||+||+||||||||+|+.+..
T Consensus 507 ~~~~~~~~~e-~~--~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~------ 577 (726)
T PRK05402 507 TFSLLYAYSE-NF--VLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW------ 577 (726)
T ss_pred hHHHhHhhhc-cc--cCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC------
Confidence 0 00111111 12 267899984 67776643 3678889999999999999999999999852
Q ss_pred CCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc
Q psy15051 918 RDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997 (1065)
Q Consensus 918 ~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL 997 (1065)
+ .+.+|+|+.... ...+.++++||+|++||+++|+|
T Consensus 578 -~------------------~~~~l~W~~~~~-------------------------~~~~~l~~~~k~Li~Lr~~~~aL 613 (726)
T PRK05402 578 -N------------------HDASLDWHLLDF-------------------------PWHRGVQRLVRDLNHLYRAEPAL 613 (726)
T ss_pred -C------------------ccCcCCccccCC-------------------------cchHHHHHHHHHHHHHHHhChhh
Confidence 1 246788975321 11346999999999999999999
Q ss_pred cCCC-----eEEEcc---CCcEEEEEEEcC--CcEEEEEEECCCCcE---EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 998 RMGD-----YKISTP---NNYVFILTRTEG--STSVYLIINLNSRTE---TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 998 ~~G~-----~~~l~~---~~~viaf~R~~~--~~~vlVv~N~s~~~~---~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+.|+ +.++.. +++|+||.|..+ ++.+|||+|+++.++ .+.++. ++.++++++|+...++
T Consensus 614 ~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~----~g~~~~ilnsd~~~~g 685 (726)
T PRK05402 614 HELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ----AGRWREVLNTDAEHYG 685 (726)
T ss_pred hccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC----CCeEEEEEcCcchhhC
Confidence 7654 455543 457999999954 589999999998653 444442 5899999998876543
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=412.00 Aligned_cols=358 Identities=16% Similarity=0.221 Sum_probs=243.4
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
.+..+|||+|+++|+....+..|+++ |++++| +|||+||||+|+||||++++. ++|||++.+|
T Consensus 142 ~~~~~IYE~Hvg~f~~~~~g~~~ty~---------------~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~ 206 (639)
T PRK14706 142 DQPISIYEVHVGSWARRDDGWFLNYR---------------ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY 206 (639)
T ss_pred CCCcEEEEEehhhcccCCCCCccCHH---------------HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc
Confidence 34589999999999865433356777 999997 899999999999999999864 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|+|+++|||++|||+||++|
T Consensus 207 ~~~~~~~g~~~~~~~lv~~~------------------------------------------------------------ 226 (639)
T PRK14706 207 YAPTSRLGTPEDFKYLVNHL------------------------------------------------------------ 226 (639)
T ss_pred cccccccCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH--
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV-- 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~-- 790 (1065)
|++||+||||+|+||++.++.++.. .++ ..+|.+.+...|. ..+|.. +|+.+++|+++|.+.
T Consensus 227 -----H~~gi~VilD~v~nH~~~~~~~l~~-~dg----~~~y~~~~~~~g~----~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 227 -----HGLGIGVILDWVPGHFPTDESGLAH-FDG----GPLYEYADPRKGY----HYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred -----HHCCCEEEEEecccccCcchhhhhc-cCC----CcceeccCCcCCc----CCCCCCcccCCCCHHHHHHHHHHHH
Confidence 6666677777777777665433221 111 1122222211121 234544 666677777777666
Q ss_pred ----------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhccC
Q psy15051 791 ----------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGT 818 (1065)
Q Consensus 791 ----------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~ 818 (1065)
|++..|++++|||.+...+........
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~- 371 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY- 371 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-
Confidence 333446799999999875554444322
Q ss_pred CCCccccccccHHHHHHhhcCCChHHHHHHH-HHHhhcCC--CCCcccccccCCChhhHhh-----hc-C-----HHHHH
Q psy15051 819 GDTQGTHLSVNYEIMNKFGATSNAKDLENVV-NAYLKSLP--SGKWSSWMVGGHSITRIAT-----RY-S-----PDLVD 884 (1065)
Q Consensus 819 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~--~~~~~~~flenHD~~Rl~s-----~~-~-----~~~~k 884 (1065)
..+||+.++..+++.+..-.....+.+.. ...+.... .....-.+++|||+.+... +. | ..++|
T Consensus 372 --G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r 449 (639)
T PRK14706 372 --GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYR 449 (639)
T ss_pred --CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHH
Confidence 36799999988877432111111111110 00000000 0001112789999977532 23 2 14578
Q ss_pred HHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCC
Q psy15051 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964 (1065)
Q Consensus 885 la~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~ 964 (1065)
++++++||+||+||||||+|+|+.+.. .++.+|+|.....
T Consensus 450 ~~~~~~~t~PG~pLiFmG~EfG~~~ew-------------------------~~~~~l~W~l~~~--------------- 489 (639)
T PRK14706 450 AFLAMMWTTPGKKLLFMGQEFAQGTEW-------------------------NHDASLPWYLTDV--------------- 489 (639)
T ss_pred HHHHHHHhCCCCcEEEeccccCCCCCC-------------------------CcccCCCCcccCC---------------
Confidence 889999999999999999999975431 1457788875321
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcCC--cEEEEEEECCCC--
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEGS--TSVYLIINLNSR-- 1032 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~~--~~vlVv~N~s~~-- 1032 (1065)
...+.+.+++|+|++||+++|||+.|+ ++++.. +++|+||.|..++ +.+|||+|+++.
T Consensus 490 ----------~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~ 559 (639)
T PRK14706 490 ----------PDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYR 559 (639)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCc
Confidence 012359999999999999999998776 455543 4579999999643 459999999984
Q ss_pred -cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1033 -TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1033 -~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
...|.++. +|.++++++|+...++
T Consensus 560 ~~y~ig~p~----~g~~~~i~nsd~~~~g 584 (639)
T PRK14706 560 EQYRIGVPQ----GGEYRVLLSTDDGEYG 584 (639)
T ss_pred CCeEECCCC----CCeEEEEEcCCccccC
Confidence 55666664 6999999998876654
|
|
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=407.51 Aligned_cols=355 Identities=19% Similarity=0.259 Sum_probs=241.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHh--hhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIE--KIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~--kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
.|+++||||+|++.|+..+++..++++ |+|. |+++ +|||||+||||+||||||+++.+
T Consensus 147 ~~~~~vIYE~hvr~ft~~~~~~~~~~~-----Gtf~------g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~ 215 (658)
T PRK03705 147 PWGSTVIYEAHVRGLTYLHPEIPVEIR-----GTYA------ALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGL 215 (658)
T ss_pred CccccEEEEEehhhhcccCCCCCcccc-----ccHH------HhhcccchHHHHHcCCCEEEecCcccCCCccccccccc
Confidence 478999999999999975544332222 3333 7776 59999999999999999999753
Q ss_pred -CCCCCcCCCCcccCCCCCCH-----HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCcc
Q psy15051 625 -GDIGYDISNHTEVGKDFGTM-----EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPV 698 (1065)
Q Consensus 625 -~~~GY~~~dy~~idp~~Gt~-----edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 698 (1065)
++|||++.|||+|||+|||. +|||+||++|
T Consensus 216 ~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~-------------------------------------------- 251 (658)
T PRK03705 216 SNYWGYNPLAMFALDPAYASGPETALDEFRDAVKAL-------------------------------------------- 251 (658)
T ss_pred ccccCcccccccccccccCCCCcchHHHHHHHHHHH--------------------------------------------
Confidence 57999999999999999984 7999999999
Q ss_pred ccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC---chhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc
Q psy15051 699 YAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK---HDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775 (1065)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~---~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ 775 (1065)
|++||+||||+|+|||+.. ++++.. .+. ....||. ... +|. ..+|..
T Consensus 252 ---------------------H~~GI~VIlDvV~NHt~~~~~~~~~~~~--~~~-d~~~yy~-~~~-~g~----~~~~~g 301 (658)
T PRK03705 252 ---------------------HKAGIEVILDVVFNHSAELDLDGPTLSL--RGI-DNRSYYW-IRE-DGD----YHNWTG 301 (658)
T ss_pred ---------------------HHCCCEEEEEEcccCccCcCCCCcchhc--ccC-CCccceE-ECC-CCC----cCCCCC
Confidence 8888888888888998853 333321 111 1123443 322 232 223332
Q ss_pred ----ccCCCHHHHHHHHHHHHh--------------------------------------cCCceEEEeecCCCChHHHh
Q psy15051 776 ----INITSREVMRSQKDVVQS--------------------------------------FPLILMIITEAYSPSLEKVA 813 (1065)
Q Consensus 776 ----ln~~n~~v~~~l~~~lk~--------------------------------------~~~~~~ligE~~~~~~~~~~ 813 (1065)
+|+++|+|+++|.++++. ..+++.++||.|...+..
T Consensus 302 ~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~~~~-- 379 (658)
T PRK03705 302 CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIGPGG-- 379 (658)
T ss_pred ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCCCCh--
Confidence 999999999999998322 112789999999863221
Q ss_pred hhccCCCCccccccccHHHHHHhh-----cCCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC-----
Q psy15051 814 KYYGTGDTQGTHLSVNYEIMNKFG-----ATSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS----- 879 (1065)
Q Consensus 814 ~y~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~----- 879 (1065)
+ ..+.....-..||..+++.++ ......++...+......++ .....++|+++||+.++.+++.
T Consensus 380 -~-~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~h 457 (658)
T PRK03705 380 -Y-QVGNFPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQKH 457 (658)
T ss_pred -h-hhcCCCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhccc
Confidence 1 111111111234555554432 23445555555543322221 2334556999999988877431
Q ss_pred -----------------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccc
Q psy15051 880 -----------------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYI 924 (1065)
Q Consensus 880 -----------------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~ 924 (1065)
.++.|++++++|+++|+||||+|||+|+++..
T Consensus 458 n~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G------------- 524 (658)
T PRK03705 458 NEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHG------------- 524 (658)
T ss_pred hhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCC-------------
Confidence 12467889999999999999999999999542
Q ss_pred cccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe--
Q psy15051 925 FGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-- 1002 (1065)
Q Consensus 925 ~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-- 1002 (1065)
+.+.++++.....|+|+.. .+++++++|+||+|||++|+|+..++
T Consensus 525 ----~nN~y~~~~~i~~~dW~~~-----------------------------~~~l~~f~k~Li~lRk~~~~l~~~~~~~ 571 (658)
T PRK03705 525 ----NNNAYCQDNALTWLDWSQA-----------------------------DRGLTAFTAALIHLRQRIPALTQNRWWE 571 (658)
T ss_pred ----CCCCccCCCCccccccchh-----------------------------hhHHHHHHHHHHHHHHhChhhccccccc
Confidence 1124456656677888742 14699999999999999999976544
Q ss_pred ------EEEccC------------CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEc
Q psy15051 1003 ------KISTPN------------NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 1003 ------~~l~~~------------~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
.++..+ ...++|... +.++|++|.+.++++++||. +.|+++++
T Consensus 572 ~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~v~~N~~~~~~~~~lp~-----~~w~~~~~ 632 (658)
T PRK03705 572 EGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS---DRWLIAINATLEVTEIVLPE-----GEWHAIPP 632 (658)
T ss_pred CCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC---CCEEEEECCCCCCeEEECCC-----cceEEEEc
Confidence 333322 234555543 45999999999999999985 57888853
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=426.29 Aligned_cols=357 Identities=20% Similarity=0.303 Sum_probs=244.1
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHH--hhhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGII--EKIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~--~kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
-|++.||||+|++.|+.....-.|+++ |+|. ||. ++|+|||+||||+||||||+++..
T Consensus 155 ~~~d~vIYE~hvr~ft~~~~~~gg~~~-----Gt~~------~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~ 223 (1221)
T PRK14510 155 DWDDSPLYEMNVRGFTLRHDFFPGNLR-----GTFA------KLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGL 223 (1221)
T ss_pred CcccCeEEEEccchhhccCCCCCcccC-----cHHh------hcCCchhHHHHHHcCCCEEEeCCccccCcccccccccC
Confidence 378999999999999864433345555 3333 555 567799999999999999998753
Q ss_pred -CCCCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccC
Q psy15051 625 -GDIGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAG 701 (1065)
Q Consensus 625 -~~~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 701 (1065)
+||||++.||++|||+|| +.+|||+||++|
T Consensus 224 ~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~----------------------------------------------- 256 (1221)
T PRK14510 224 SNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEA----------------------------------------------- 256 (1221)
T ss_pred cCcCCCCCCCCCCcChhhccCcHHHHHHHHHHH-----------------------------------------------
Confidence 469999999999999999 999999999999
Q ss_pred CCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc---ccC
Q psy15051 702 SGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---INI 778 (1065)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~---ln~ 778 (1065)
|++||+||||+|+|||+..+.+.............||....+..+. ..+.|+. +|+
T Consensus 257 ------------------H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~---y~~~~G~gn~~n~ 315 (1221)
T PRK14510 257 ------------------QSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKE---YENWWGCGNLPNL 315 (1221)
T ss_pred ------------------HHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCc---ccCCCCCCCcccc
Confidence 8888888888899999877665321110111123344432211111 1222222 788
Q ss_pred CCHHHHHHHHHHHHh----------------------------------cCCceEE-----EeecCCCChHHHhhhccCC
Q psy15051 779 TSREVMRSQKDVVQS----------------------------------FPLILMI-----ITEAYSPSLEKVAKYYGTG 819 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~----------------------------------~~~~~~l-----igE~~~~~~~~~~~y~~~~ 819 (1065)
++++|++++.++++. ..++.++ |||.|..... .|....
T Consensus 316 ~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~---~~~~g~ 392 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLG---GYQYGK 392 (1221)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCC---ccccCC
Confidence 899999999888332 2334444 9999986321 111111
Q ss_pred CC---ccccccccHHHHHHhhcCCC-hHHHHHHHHHHhhcCCC----CCcccccccCCChhhHhhhcC------------
Q psy15051 820 DT---QGTHLSVNYEIMNKFGATSN-AKDLENVVNAYLKSLPS----GKWSSWMVGGHSITRIATRYS------------ 879 (1065)
Q Consensus 820 ~~---~~~d~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~----~~~~~~flenHD~~Rl~s~~~------------ 879 (1065)
.. ..++..|...++..+.+... ..++...+......++. ....++|++|||+.|+.+.++
T Consensus 393 f~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~ 472 (1221)
T PRK14510 393 FPQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGED 472 (1221)
T ss_pred CCcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHHHhhhccccchhcccc
Confidence 11 22444555555555554433 56677777655555542 234556999999999988654
Q ss_pred ----------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccc
Q psy15051 880 ----------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931 (1065)
Q Consensus 880 ----------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~ 931 (1065)
.+++|++++++|+++|+||||||||+|.+... . .+
T Consensus 473 nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~G-n----------------~n 535 (1221)
T PRK14510 473 NRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNG-N----------------NN 535 (1221)
T ss_pred ccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCC-C----------------CC
Confidence 12578899999999999999999999987642 0 12
Q ss_pred ccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc----
Q psy15051 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP---- 1007 (1065)
Q Consensus 932 ~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~---- 1007 (1065)
.++.+.+|.+|+|+... +++++++|+||+|||++|+|+.|++.....
T Consensus 536 ~y~~~~~r~~~~W~~~~-----------------------------~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~ 586 (1221)
T PRK14510 536 GYAQDNNRGTYPWGNED-----------------------------EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDAS 586 (1221)
T ss_pred CCCCCCccccCCccccc-----------------------------HHHHHHHHHHHHHHHhChhhccCccccCcccccC
Confidence 23445578999997521 369999999999999999999888764321
Q ss_pred -CCcEEEEE----------------------EE--cC----CcEEEEEEECCCCcEEEEcCC
Q psy15051 1008 -NNYVFILT----------------------RT--EG----STSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1008 -~~~viaf~----------------------R~--~~----~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
.++|..|. .. .+ ++.++|++|.+.+++++.||.
T Consensus 587 ~~~dv~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 587 GGKDVEWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred CCCCEEEECCCCCcCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 12233332 22 11 247999999999999999974
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=394.87 Aligned_cols=395 Identities=16% Similarity=0.166 Sum_probs=244.1
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
.++++|||+|+++|+.+.+++.++++ +++++ |+|||+||||+||||||++++. .+|||++.+|
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~---------------~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~ 308 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWP---------------TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGL 308 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcC
Confidence 56789999999999986655567777 99988 5999999999999999999875 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|+|+|+|||++|||+||++||++||+||||+|++| .+... .....+...+.|+... +
T Consensus 309 ~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH---~~~d~----------~~l~~fdg~~~Ye~~d---~------- 365 (730)
T PRK12568 309 YAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAH---FPDDA----------HGLAQFDGAALYEHAD---P------- 365 (730)
T ss_pred CccCcccCCHHHHHHHHHHHHHCCCEEEEEecccc---CCccc----------cccccCCCccccccCC---C-------
Confidence 99999999999999999999666666666666532 22110 0000000001110000 0
Q ss_pred hhhhhhhcCcEE-EEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCC-------------CCCcc-----
Q psy15051 715 AESMEHRAGMKI-LVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPP-------------NNWKH----- 775 (1065)
Q Consensus 715 ~~~~~H~~Gi~v-IlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~-------------~~W~~----- 775 (1065)
..|... --++++|.. ++-.++.+.. .-.||+...+.||+ |++. ..|..
T Consensus 366 ------~~g~~~~W~~~~~N~~---~peVr~~li~---~a~~Wl~eyhIDG~-R~DAva~mly~d~~r~~g~w~pn~~gg 432 (730)
T PRK12568 366 ------REGMHRDWNTLIYNYG---RPEVTAYLLG---SALEWIEHYHLDGL-RVDAVASMLYRDYGRAEGEWVPNAHGG 432 (730)
T ss_pred ------cCCccCCCCCeecccC---CHHHHHHHHH---HHHHHHHHhCceEE-EEcCHhHhhhhccccccccccccccCC
Confidence 000000 000011110 0110000000 00122222233444 3321 11221
Q ss_pred -ccCCCHHHHHHHHHHHHhcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhc-----CCChHHHHHHH
Q psy15051 776 -INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA-----TSNAKDLENVV 849 (1065)
Q Consensus 776 -ln~~n~~v~~~l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~l~~~l 849 (1065)
-|....++.+.+.+.+++..|++++|||.+...+......... ..+|++.++..+++.+.. +.....-...+
T Consensus 433 ~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~g--GlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~l 510 (730)
T PRK12568 433 RENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDG--GLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQL 510 (730)
T ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCC--CCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhh
Confidence 1222234555555556667779999999876645544444432 367999999888775422 12111111212
Q ss_pred HHHhhcCCCCCcccccccCCCh-----hhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCC
Q psy15051 850 NAYLKSLPSGKWSSWMVGGHSI-----TRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQR 918 (1065)
Q Consensus 850 ~~~~~~~~~~~~~~~flenHD~-----~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~ 918 (1065)
...+...-...+. +..|||+ .++..+..++ .+|++++++|+.||.||||||+|+|+....
T Consensus 511 tf~~~y~~~e~fv--lp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew------- 581 (730)
T PRK12568 511 TFGLVYAFSERFV--LPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW------- 581 (730)
T ss_pred hhhhhhhhhccEe--ccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc-------
Confidence 2111111111122 6789999 5666665432 467888999999999999999999988753
Q ss_pred CccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 919 Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
....+++|..... ...+.+.+++|+|++||+++|||.
T Consensus 582 ------------------~~~~~ldW~ll~~-------------------------~~h~~~~~~~~dLn~ly~~~paL~ 618 (730)
T PRK12568 582 ------------------NHDQSLDWHLLDG-------------------------ARHRGMQQLVGDLNAALRRTPALY 618 (730)
T ss_pred ------------------cCCCCccccccCC-------------------------hhHHHHHHHHHHHHHHHHhChhhh
Confidence 1225677875321 123568899999999999999996
Q ss_pred CCC-----eEEEcc---CCcEEEEEEEcCC---cEEEEEEECCCCcE---EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 999 MGD-----YKISTP---NNYVFILTRTEGS---TSVYLIINLNSRTE---TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 999 ~G~-----~~~l~~---~~~viaf~R~~~~---~~vlVv~N~s~~~~---~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.++ |+++.. +++|+||.|+..+ +.+|||+||++.++ .|.++. +|.++.+++|+...++
T Consensus 619 ~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~----~G~~~eilNsd~~~yg 690 (730)
T PRK12568 619 RGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPR----AGGWREILNTDSAHYG 690 (730)
T ss_pred cccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCC----CCeEEEEEcCchhhhC
Confidence 654 566654 3479999999643 56999999998754 355553 5999999999877665
|
|
| >KOG0471|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=404.00 Aligned_cols=338 Identities=23% Similarity=0.342 Sum_probs=255.8
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.++||+++++|||+|+||+++++++.||++||++|||||+ +||+| ++|++ |++++++.++||
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~-~lG~t---------------aiWis-P~~~s~~~~~GY- 72 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIK-ELGFT---------------AIWLS-PFTKSSKPDFGY- 72 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHH-hcCCc---------------eEEeC-CCcCCCHHHhcc-
Confidence 4799999999999999999999999999999999999999 99999 66666 888899999999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++++| +.|+|+|||+|||++||. +|++||++| +|+ |+||++
T Consensus 73 -------~~~d~-------~~l~p~fGt~edf~~Li~~~h~~gi~ii--------~D~-------viNh~~--------- 114 (545)
T KOG0471|consen 73 -------DASDL-------EQLRPRFGTEEDFKELILAMHKLGIKII--------ADL-------VINHRS--------- 114 (545)
T ss_pred -------Cccch-------hhhcccccHHHHHHHHHHHHhhcceEEE--------Eee-------ccccCC---------
Confidence 66666 677779999999999997 699999999 887 888865
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQR 262 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1065)
.+|+||...+..-..| -|+.+-|-+..-. ...+.+|.+|.+.+..
T Consensus 115 -~~~~wf~~~~~~~~~y-----~d~~~~~~~~~~~-----------------------------~g~~~~p~nw~~~~~~ 159 (545)
T KOG0471|consen 115 -DEVEWFKASPTSKTGY-----EDWYPWHDGSSLD-----------------------------VGKRIPPLNWLSVFGG 159 (545)
T ss_pred -ccccccccCccccccc-----eeeeeccCccccc-----------------------------ccCCCCccchHhhhcc
Confidence 7788887765433223 2333222111100 1122233444333211
Q ss_pred -cC-CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 263 -VY-PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 263 -~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
.+ .++...++++|+|. ..|||||++||+|+ ++
T Consensus 160 s~~~~~e~~~~~~l~~~~-------------------~~~pDln~~n~~V~---------------------------~~ 193 (545)
T KOG0471|consen 160 SAWPFDEGRQKYYLGQFA-------------------VLQPDLNYENPDVR---------------------------KA 193 (545)
T ss_pred ccCcccccccceeccchh-------------------hcCCCCCCCCHHHH---------------------------HH
Confidence 11 11234456699999 79999999999997 89
Q ss_pred HHHHHH-HHHHcCCCeeeecCccccccCC---CCCCCCCCCcCCCCCCCCCCC-ccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 341 LLCILE-FWLKRGVDGFGMDSVLKLYEHE---SFANEPRLPEAAGRPDSDPTA-YDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 341 ~~~~l~-~Wl~~GvDGfRlDav~~l~~~~---~~~d~p~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
|.++++ ||+++||||||+|+++++.++. ..+|+|+...+.-..+.++.. ..+.|..++++.+.+++.+|..++.+
T Consensus 194 ~~~~l~~~~~~~gvdGfRiD~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 273 (545)
T KOG0471|consen 194 IKEWLRDFWLEKGVDGFRIDAVKGYAGENFKNMWPDEPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDY 273 (545)
T ss_pred HHHHHHHHHhhcCCCeEEEEcccccccccccccccCCCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhhhh
Confidence 999999 9999999999999999999988 888888765433111222222 36889999999999999999999998
Q ss_pred CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHHHhcCc-CCcc
Q psy15051 416 GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFIYCGIV-DDTS 484 (1065)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~Wq~~m~-~~~~ 484 (1065)
.....+++......+.+........+.++ ....+..+.+++|..++.. .+..|...|+ .+.+
T Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~n-------~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (545)
T KOG0471|consen 274 SAAFGFGDKRILQTEAYSSLEQLLRLLEN-------SSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRW 346 (545)
T ss_pred hhcccccchhhhhhhhhccHHHHHhhhcc-------CCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCc
Confidence 77777777777777776653333333332 1111224678888777633 6789999999 6889
Q ss_pred cchhhcccCccccchhhhhhh
Q psy15051 485 ALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 485 ~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
++|+++|||++|.++|++.+.
T Consensus 347 a~W~~~~~~~~r~~sr~~~~~ 367 (545)
T KOG0471|consen 347 AHWVLGNHDQARLASRFGSDS 367 (545)
T ss_pred eeeeecCccchhhHHHhcchh
Confidence 999999999999999999997
|
|
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=392.30 Aligned_cols=396 Identities=32% Similarity=0.579 Sum_probs=280.5
Q ss_pred ceEEEEecccccCcCC------CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCC
Q psy15051 560 TVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISN 633 (1065)
Q Consensus 560 ~vIYei~v~~F~d~~~------d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~d 633 (1065)
+||||++++||.++++ +|+|||+ ||+++|||||+|||++|||+||++++..+|||++.|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~---------------Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~D 65 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLK---------------GITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSD 65 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHH---------------hHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccc
Confidence 4899999999999998 8889999 999999999999999999999999988889999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|+.|||+|||++||++||+++
T Consensus 66 y~~id~~~Gt~~d~~~li~~~----------------------------------------------------------- 86 (505)
T COG0366 66 YTKVDPHFGTEEDFKELVEEA----------------------------------------------------------- 86 (505)
T ss_pred hhhcCcccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCC-CCC-cceeecCCC-------CCCCCCCCCCCc-----c----
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKID-PYT-NYYVWKDGL-------NGKPGTPPNNWK-----H---- 775 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~-~~~-d~y~~~~~~-------dG~p~~~~~~W~-----~---- 775 (1065)
|++||+||+|+|+||+|.+|+||.++....+ +.. +||+|.... +..+......|. .
T Consensus 87 ------H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (505)
T COG0366 87 ------HKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLH 160 (505)
T ss_pred ------HHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEE
Confidence 9999999999999999999999999987643 454 899987531 111122223342 1
Q ss_pred --------ccCCCHHHHHHHHHHHHhcC--------CceEE-Ee--------ecCCCChHHHhhh--------ccC--CC
Q psy15051 776 --------INITSREVMRSQKDVVQSFP--------LILMI-IT--------EAYSPSLEKVAKY--------YGT--GD 820 (1065)
Q Consensus 776 --------ln~~n~~v~~~l~~~lk~~~--------~~~~l-ig--------E~~~~~~~~~~~y--------~~~--~~ 820 (1065)
||+.|++|++++.++++.+- -+++- +. +...........+ +.. ..
T Consensus 161 ~~~~~~~dln~~n~~v~~~~~~~~~~W~~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (505)
T COG0366 161 LFSSEQPDLNWENPEVREELLDVVKFWLDKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAI 240 (505)
T ss_pred ecCCCCCCcCCCCHHHHHHHHHHHHHHHHcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcCcce
Confidence 99999999999998744311 01000 00 0000000000000 000 00
Q ss_pred ---------------------CccccccccHHHHHHh---hcCCChHHHHHHHHHHhhcCC-CCCcccccccCCChhhHh
Q psy15051 821 ---------------------TQGTHLSVNYEIMNKF---GATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRIA 875 (1065)
Q Consensus 821 ---------------------~~~~d~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~ 875 (1065)
...+++.+++.....- ........+...+..+..... ...+...|..|||++|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hD~~r~~ 320 (505)
T COG0366 241 TDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLSNHDQPRLL 320 (505)
T ss_pred eeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhhhhhcCcccee
Confidence 0001111111111000 011245566666666665554 356666689999999999
Q ss_pred hhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCC-ccc
Q psy15051 876 TRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN-DQE 948 (1065)
Q Consensus 876 s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~-~~~ 948 (1065)
++.+. ..++++++++++++|+|+||||+|+|+.+.........+... ........|+++|.+|+|+ ...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~ 396 (505)
T COG0366 321 SRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVE----LDSIILLSRDGCRTPMPWDENGL 396 (505)
T ss_pred eeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhh----hhhhhhccccCCCCCcCCCCCCC
Confidence 98754 456777889999999999999999999987522211111100 1223345688899999999 677
Q ss_pred ccCCCCCCCCCCCCCCccc-ccHHHhhcC--CCcHHHHHHHHHHHHHhccc-ccCCC-eEEEccC-CcEEEEEEEcCCcE
Q psy15051 949 NAGFSKAKSWLPVHPNYWT-LNAQAEKKT--KPSHYSVYKDLTTLRATSGA-VRMGD-YKISTPN-NYVFILTRTEGSTS 1022 (1065)
Q Consensus 949 ~~gFs~~~~wl~~~~~~~~-~~~~~~~~~--~~~l~~~~r~Li~LRk~~pa-L~~G~-~~~l~~~-~~viaf~R~~~~~~ 1022 (1065)
.+||+...+|+..+..... .+++.+... ..+++.++++|+++|+.+.+ +..|. +..+..+ ..+++|.|...++.
T Consensus 397 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (505)
T COG0366 397 NAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGET 476 (505)
T ss_pred CCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCce
Confidence 8899887889888887755 777776555 77999999999999999844 45573 4433333 37999999988889
Q ss_pred EEEEEECCCCcEEEEcC
Q psy15051 1023 VYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 1023 vlVv~N~s~~~~~v~l~ 1039 (1065)
++|++|++.....+.++
T Consensus 477 ~~~~~n~~~~~~~~~~p 493 (505)
T COG0366 477 LLVVNNLSEEEQEVELP 493 (505)
T ss_pred EEEEEcCCCccccccCC
Confidence 99999999886455554
|
|
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=389.75 Aligned_cols=310 Identities=19% Similarity=0.256 Sum_probs=210.5
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCCC--CCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGPN--GDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
+||++||||||+||||+|||+||+++.+ .+|||++.||+ +|||+|||.+|||+||++||++||+||+|+
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4999999999999999999999999975 36999999999 799999999999999999955555555555
Q ss_pred cccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCC--chhhH
Q psy15051 666 QTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNK--HDWFI 743 (1065)
Q Consensus 666 v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~--~~wf~ 743 (1065)
|+ ||++.. |+||+
T Consensus 102 V~-----------------------------------------------------------------NH~~~~~~~~~~~ 116 (479)
T PRK09441 102 VL-----------------------------------------------------------------NHKAGADEKETFR 116 (479)
T ss_pred Cc-----------------------------------------------------------------ccccCCCcceeee
Confidence 55 444421 22332
Q ss_pred hhh------------------------c-cCCCC----CcceeecCCC-------CCC-C-CCCCCCCc-----------
Q psy15051 744 KSA------------------------Q-KIDPY----TNYYVWKDGL-------NGK-P-GTPPNNWK----------- 774 (1065)
Q Consensus 744 ~~~------------------------~-~~~~~----~d~y~~~~~~-------dG~-p-~~~~~~W~----------- 774 (1065)
... . ..+.| .+|+.+.... .+. + .....+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 100 0 00011 1121111100 000 0 00001221
Q ss_pred -----cccCCCHHHHHHHHHHHHh--------------------------------c-CCceEEEeecCCCChHHHhhhc
Q psy15051 775 -----HINITSREVMRSQKDVVQS--------------------------------F-PLILMIITEAYSPSLEKVAKYY 816 (1065)
Q Consensus 775 -----~ln~~n~~v~~~l~~~lk~--------------------------------~-~~~~~ligE~~~~~~~~~~~y~ 816 (1065)
.||+.||+|+++|.++++. . .++++++||.|..++..+..|.
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~ 276 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYL 276 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHH
Confidence 2999999999999987221 1 2478999999998776666676
Q ss_pred cCC--CCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH---HHHHHHHHHHH
Q psy15051 817 GTG--DTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP---DLVDAMNMLTL 891 (1065)
Q Consensus 817 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~---~~~kla~~ll~ 891 (1065)
+.. ....+|+++++.+..++... ....+.+.+..... ........+|++|||++|+.+..+. ...++|++++|
T Consensus 277 ~~~~~~~~~~Df~~~~~l~~~~~~~-~~~~l~~~~~~~~~-~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~ll 354 (479)
T PRK09441 277 EQVEGKTDLFDVPLHYNFHEASKQG-RDYDMRNIFDGTLV-EADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALIL 354 (479)
T ss_pred HhcCCCceEecHHHHHHHHHHHhcC-CccchHhhhCcchh-hcCcccceeeeccccCCCcccccccccccchHHHHHHHH
Confidence 532 12467888888888877532 22334443322111 1112223459999999999887652 23579999999
Q ss_pred hCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccH
Q psy15051 892 LLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970 (1065)
Q Consensus 892 tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~ 970 (1065)
|+| |+|+||||+|+|+.+.. +
T Consensus 355 T~p~GiP~IYYGdE~g~~g~~--------~-------------------------------------------------- 376 (479)
T PRK09441 355 LREEGYPCVFYGDYYGASGYY--------I-------------------------------------------------- 376 (479)
T ss_pred hCCCCceeeEeccccCCCCCc--------c--------------------------------------------------
Confidence 999 99999999999987641 0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCC--cEEEEEEECCCC-cEEEEcCC
Q psy15051 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS--TSVYLIINLNSR-TETVDLSD 1040 (1065)
Q Consensus 971 ~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~--~~vlVv~N~s~~-~~~v~l~~ 1040 (1065)
..++++++|+|++|||++ +.|++..+..++++++|.|..++ +.++||+|.+.. .++++++.
T Consensus 377 ------~~~l~~~i~~Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~ 440 (479)
T PRK09441 377 ------DMPFKEKLDKLLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGE 440 (479)
T ss_pred ------cchHHHHHHHHHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCc
Confidence 024789999999999986 47999888888899999998653 578988888653 44477753
|
|
| >TIGR02456 treS_nterm trehalose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=406.62 Aligned_cols=291 Identities=26% Similarity=0.421 Sum_probs=205.8
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccce
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWI 105 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~ 105 (1065)
+||+++|||||+|+||+|++++|.|||+||++|||||+ +|||| ++|++ |++.++..+|||
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~-~LGv~---------------~i~L~-Pi~~~~~~~~gY--- 60 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLK-WLGVD---------------ALWLL-PFFQSPLRDDGY--- 60 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHH-HCCCC---------------EEEEC-CCcCCCCCCCCC---
Confidence 59999999999999999999999999999999999999 99999 66666 777777778999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ .
T Consensus 61 -----~~~dy-------~~vd~~~Gt~~df~~Lv~~ah~~Gi~vi--------lD~-------V~NH~s----------~ 103 (539)
T TIGR02456 61 -----DVSDY-------RAILPEFGTIDDFKDFVDEAHARGMRVI--------IDL-------VLNHTS----------D 103 (539)
T ss_pred -----Ccccc-------cccChhhCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccCcCC----------C
Confidence 66666 667779999999999997 799999999 888 999976 7
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcc--cccccccccCCcch--hhhc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEK--YWGDILERTVSSNS--LQAL 260 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~ 260 (1065)
+|+||++...+ ++ ++.+.||..... + .++.+. ...+ ...++| ....
T Consensus 104 ~~~~f~~~~~~-------------~~--~~~~~~~~~~~~----------~-~~~~~~~~~~~~----~~~~~w~~~~~~ 153 (539)
T TIGR02456 104 QHPWFQEARSN-------------PD--GPYRDFYVWSDT----------D-EKYKDTRIIFVD----TEKSNWTFDPVA 153 (539)
T ss_pred CCHHHHHHhhC-------------CC--CCCCceEEecCC----------C-cccccccccccc----cCCCCccccCCc
Confidence 78888764221 00 111222210000 0 000000 0000 000001 0112
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 261 QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 261 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
+.+| +|.|. ..+||||+.||+|| ++
T Consensus 154 ~~~y---------~~~f~-------------------~~~pdln~~np~vr---------------------------~~ 178 (539)
T TIGR02456 154 KQYY---------WHRFF-------------------SHQPDLNYDNPAVH---------------------------DA 178 (539)
T ss_pred CeeE---------Eeccc-------------------CCCCccCCCCHHHH---------------------------HH
Confidence 3344 88888 79999999999997 88
Q ss_pred HHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCcc
Q psy15051 341 LLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQS 419 (1065)
Q Consensus 341 ~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~ 419 (1065)
|+++++||++.||||||||||++|+|..+ . -|.+.|++++|+++||+.+.+ +|+..
T Consensus 179 l~~~~~~w~~~GvDGfRlDav~~~~~~~~------------~-----------~~~~~p~~~~f~~~~~~~v~~~~p~~~ 235 (539)
T TIGR02456 179 VHDVMRFWLDLGVDGFRLDAVPYLYEREG------------T-----------SCENLPETHEFLKRLRKMVDREYPGRM 235 (539)
T ss_pred HHHHHHHHHHcCCCEEEEecHHhhhccCC------------C-----------ccCCCchHHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999999999988432 1 156789999999999998875 59999
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHH---HHHhcCcCCcccc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSH---FIYCGIVDDTSAL 486 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~---~Wq~~m~~~~~~~ 486 (1065)
++||......+.. .|+|. ..+.++++.|+|++.... .+. .++...+....++
T Consensus 236 ~iaE~~~~~~~~~-------~y~~~--------~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~ 300 (539)
T TIGR02456 236 LLAEANQWPEEVV-------AYFGD--------EGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIPDSCQWC 300 (539)
T ss_pred EEEEeCCCHHHHH-------HhhCC--------CCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhccCCCcee
Confidence 9999743322211 22221 112268899999986422 111 2333444555666
Q ss_pred hhhcccCccc
Q psy15051 487 MVMNERRLST 496 (1065)
Q Consensus 487 ~~~~nhd~~r 496 (1065)
+++.|||.+|
T Consensus 301 ~fl~nHD~~~ 310 (539)
T TIGR02456 301 IFLRNHDELT 310 (539)
T ss_pred eecCCCCccC
Confidence 7789999976
|
Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530). |
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=399.67 Aligned_cols=387 Identities=20% Similarity=0.283 Sum_probs=243.6
Q ss_pred cccceEEEEecccccCcCCC------CCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-------
Q psy15051 557 WKNTVIYQILVPSFKDSNND------GIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP------- 623 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d------~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~------- 623 (1065)
++++||||+|+|+|+...+. ..|+|+ ||+++|+|||+|||||||||||+++.
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~---------------gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~ 513 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFA---------------AFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKN 513 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHH---------------HHHHhHHHHHHcCCCEEEEcCcccccccccccc
Confidence 57899999999999943221 247777 99999999999999999999998631
Q ss_pred ------------CCCCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhh
Q psy15051 624 ------------NGDIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAI 683 (1065)
Q Consensus 624 ------------~~~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~ 683 (1065)
..+|||++.+||+|+++||+ ++|||+||++|
T Consensus 514 ~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~al----------------------------- 564 (1111)
T TIGR02102 514 KERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEI----------------------------- 564 (1111)
T ss_pred ccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHH-----------------------------
Confidence 12499999999999999998 58999999999
Q ss_pred ccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCC
Q psy15051 684 CADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLN 763 (1065)
Q Consensus 684 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~d 763 (1065)
|++||+||||+|+||++..+. |... .+.||++... +
T Consensus 565 ------------------------------------H~~GI~VILDVVyNHt~~~~~-f~~~------~p~Yy~~~~~-~ 600 (1111)
T TIGR02102 565 ------------------------------------HKRGMGVILDVVYNHTAKVYI-FEDL------EPNYYHFMDA-D 600 (1111)
T ss_pred ------------------------------------HHCCCEEEEeccccccccccc-cccc------CCCceEeeCC-C
Confidence 777777888888888877654 2221 2345554332 3
Q ss_pred CCCCCCCCCCcc--ccCCCHHHHHHHHHH--------------------------------HHhcCCceEEEeecCCCC-
Q psy15051 764 GKPGTPPNNWKH--INITSREVMRSQKDV--------------------------------VQSFPLILMIITEAYSPS- 808 (1065)
Q Consensus 764 G~p~~~~~~W~~--ln~~n~~v~~~l~~~--------------------------------lk~~~~~~~ligE~~~~~- 808 (1065)
|.+ .++|.. ++..+++||++|.++ +++..|+++|+||.|...
T Consensus 601 G~~---~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liGE~W~~~~ 677 (1111)
T TIGR02102 601 GTP---RTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIGEGWRTYA 677 (1111)
T ss_pred CCc---ccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEEecccccC
Confidence 432 122322 788888888888887 233466899999999751
Q ss_pred -hHHH-hhhccCCCC--ccccccccHHHHHHhhcCCC-----------hHHHHHHHHHHhhc---C--CCCCcccccccC
Q psy15051 809 -LEKV-AKYYGTGDT--QGTHLSVNYEIMNKFGATSN-----------AKDLENVVNAYLKS---L--PSGKWSSWMVGG 868 (1065)
Q Consensus 809 -~~~~-~~y~~~~~~--~~~d~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~~~~---~--~~~~~~~~flen 868 (1065)
.... ......... ......|+..+++++++... ...+.......... + ......++|+++
T Consensus 678 g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~a 757 (1111)
T TIGR02102 678 GDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAA 757 (1111)
T ss_pred CCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCcccEEEEEec
Confidence 1000 000000000 11235788888888864211 11222222222211 1 122334569999
Q ss_pred CChhhHhhhcC----------H------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCc--cccccccccc
Q psy15051 869 HSITRIATRYS----------P------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDP--EGYIFGKDNY 930 (1065)
Q Consensus 869 HD~~Rl~s~~~----------~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp--~~~~~~~~~~ 930 (1065)
||+.++..++. . +|.|++++++|+++|+||||+|||++.+..... +.+.-| +.+...++.
T Consensus 758 HDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnn-n~y~~~~~~~~~~~~~~- 835 (1111)
T TIGR02102 758 HDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRN-PDYRTPVSEDKVPNKST- 835 (1111)
T ss_pred CCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCc-ccccccccccccccccc-
Confidence 99999866542 1 267888899999999999999999999876310 000000 000000000
Q ss_pred cccccC-----------------CCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHh
Q psy15051 931 LKVCRD-----------------GSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRAT 993 (1065)
Q Consensus 931 ~~~~rd-----------------~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~ 993 (1065)
....++ ..-..++|+...+. .. ......+++++|.||+|||+
T Consensus 836 ~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~---------------~~------~~~~~~~~~y~~~LI~lRk~ 894 (1111)
T TIGR02102 836 LMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDA---------------DA------YPINNKTRDYTAGLIELRRS 894 (1111)
T ss_pred cccccccccccccccccccccCCCccceecccccccc---------------cc------cchhHHHHHHHHHHHHHHhc
Confidence 000011 11223334332100 00 00113689999999999999
Q ss_pred cccccCCCe-------EEEcc--------CCcEEEEEEEcC-CcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCC
Q psy15051 994 SGAVRMGDY-------KISTP--------NNYVFILTRTEG-STSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNS 1057 (1065)
Q Consensus 994 ~paL~~G~~-------~~l~~--------~~~viaf~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~ 1057 (1065)
+|+|+.++. .++.. .+.+++|..... ++.++|++|.+.++++++|+........++++++...+
T Consensus 895 ~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~~~~ 974 (1111)
T TIGR02102 895 TDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDAEQA 974 (1111)
T ss_pred CccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCcccccceEEEEccccc
Confidence 999987664 23222 146889987633 36799999999999999999743334466777775443
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=396.44 Aligned_cols=350 Identities=18% Similarity=0.268 Sum_probs=231.9
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
+.++|||+|+++|+. .++++ +++++ |||||+||||+||||||++++. ++|||++++||
T Consensus 746 ~p~~IYEvHvgsf~~-----~~~~~---------------~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ 805 (1224)
T PRK14705 746 SPMSVYEVHLGSWRL-----GLGYR---------------ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYF 805 (1224)
T ss_pred CCcEEEEEEeccccc-----CCchH---------------HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccC
Confidence 568999999999976 36788 88888 6999999999999999999875 46999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++||
T Consensus 806 ap~~ryGt~~dfk~lVd~~H------------------------------------------------------------ 825 (1224)
T PRK14705 806 APTSRFGHPDEFRFLVDSLH------------------------------------------------------------ 825 (1224)
T ss_pred CcCcccCCHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999995
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH---
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV--- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~--- 790 (1065)
++||+||||+|+||++.+. |+....++.. +|...+...|. ...|+. +|+.+++|+++|.++
T Consensus 826 -----~~GI~VILD~V~nH~~~d~-~~l~~fdg~~----~y~~~d~~~g~----~~~Wg~~~fn~~~~eVr~fli~~a~~ 891 (1224)
T PRK14705 826 -----QAGIGVLLDWVPAHFPKDS-WALAQFDGQP----LYEHADPALGE----HPDWGTLIFDFGRTEVRNFLVANALY 891 (1224)
T ss_pred -----HCCCEEEEEeccccCCcch-hhhhhcCCCc----ccccCCcccCC----CCCCCCceecCCCHHHHHHHHHHHHH
Confidence 4455555555555554332 2221111110 11111110111 122333 444444444444444
Q ss_pred -----------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhcc
Q psy15051 791 -----------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYYG 817 (1065)
Q Consensus 791 -----------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~ 817 (1065)
|++..|++++|||.+...+........
T Consensus 892 Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~ 971 (1224)
T PRK14705 892 WLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSH 971 (1224)
T ss_pred HHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccC
Confidence 555567899999998876665554443
Q ss_pred CCCCccccccccHHHHHHhhcCCChHHH------HHHHHHHhhcCCCCCcccccccCCChh-----hHhhhcCHH-----
Q psy15051 818 TGDTQGTHLSVNYEIMNKFGATSNAKDL------ENVVNAYLKSLPSGKWSSWMVGGHSIT-----RIATRYSPD----- 881 (1065)
Q Consensus 818 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l------~~~l~~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~~----- 881 (1065)
. ..|||+.++..+++....-.....+ .+........+.. .+. +..|||+. .+..+..++
T Consensus 972 G--GlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~~e-~fv--l~~SHDevvhgk~sl~~km~Gd~~~k~ 1046 (1224)
T PRK14705 972 G--GLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAFTE-NFL--LPISHDEVVHGKGSMLRKMPGDRWQQL 1046 (1224)
T ss_pred C--CccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHhhc-CEe--cccccccccccchhHHHhCCCcHHHHH
Confidence 3 3789999998888843211111101 0011111111111 122 45689973 344555432
Q ss_pred -HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC
Q psy15051 882 -LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP 960 (1065)
Q Consensus 882 -~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~ 960 (1065)
.+|++++++|+.||+||||||+|+|..... + ....++|.....
T Consensus 1047 a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew---~----------------------~~~~LdW~ll~~----------- 1090 (1224)
T PRK14705 1047 ANLRAFLAYQWAHPGKQLIFMGTEFGQEAEW---S----------------------EQHGLDWFLADI----------- 1090 (1224)
T ss_pred HHHHHHHHHHHhcCCcCEEECccccCCCCCc---c----------------------ccccCCCcccCC-----------
Confidence 467888999999999999999999998753 1 224577775321
Q ss_pred CCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC-----eEEEcc---CCcEEEEEEEcC-CcEEEEEEECCC
Q psy15051 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD-----YKISTP---NNYVFILTRTEG-STSVYLIINLNS 1031 (1065)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~-----~~~l~~---~~~viaf~R~~~-~~~vlVv~N~s~ 1031 (1065)
...+.+..++|+|++||+++|+|..++ ++++.. +++|++|.|..+ ++.+|||+||++
T Consensus 1091 --------------~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp 1156 (1224)
T PRK14705 1091 --------------PAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG 1156 (1224)
T ss_pred --------------hhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC
Confidence 123568899999999999999996544 566643 457999999953 457999999999
Q ss_pred CcEE---EEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1032 RTET---VDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1032 ~~~~---v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.++. +.++ .+|.++.+++|+...++
T Consensus 1157 ~~~~~y~igvp----~~G~y~eilnsd~~~yg 1184 (1224)
T PRK14705 1157 GPHKGYTLGVP----AAGAWTEVLNTDHETYG 1184 (1224)
T ss_pred CCccCceECCC----CCCeEEEEEeCchhhcC
Confidence 7766 4344 35899999998877654
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=356.96 Aligned_cols=247 Identities=34% Similarity=0.614 Sum_probs=188.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCH 677 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~ 677 (1065)
||++||||||+||||+|||+||++++..+|||++.||++|||+|||++|||+||++|
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~----------------------- 61 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAA----------------------- 61 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHH-----------------------
T ss_pred HHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhcc-----------------------
Confidence 999999999999999999999999987789999999999999999999999999999
Q ss_pred hhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcce
Q psy15051 678 MYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYY 756 (1065)
Q Consensus 678 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y 756 (1065)
|++||+||+|+|+||++..|+||..... ...++.+||
T Consensus 62 ------------------------------------------h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 99 (316)
T PF00128_consen 62 ------------------------------------------HKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYY 99 (316)
T ss_dssp ------------------------------------------HHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTB
T ss_pred ------------------------------------------ccccceEEEeeeccccccccccccccccccccccccce
Confidence 9999999999999999999999988765 355689999
Q ss_pred eecCC---CCCC-C-CCCCCCCc------------c---ccCCCHHHHHHHHHHHHh-----------------------
Q psy15051 757 VWKDG---LNGK-P-GTPPNNWK------------H---INITSREVMRSQKDVVQS----------------------- 793 (1065)
Q Consensus 757 ~~~~~---~dG~-p-~~~~~~W~------------~---ln~~n~~v~~~l~~~lk~----------------------- 793 (1065)
.|... .++. . ......|. . ||+.|++||++|+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~~~~~ 179 (316)
T PF00128_consen 100 YWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAKHIPKEFWK 179 (316)
T ss_dssp EEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGGGSSHHHHH
T ss_pred eecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhceEeEEEEccccccchhhHH
Confidence 98643 1110 0 00111121 1 999999999999998332
Q ss_pred --------cCCceEEEeecCCCChHHHhhhccCCCCccccccccHHH---HHHhh-----cCCChHHHHHHHHHHhhcCC
Q psy15051 794 --------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI---MNKFG-----ATSNAKDLENVVNAYLKSLP 857 (1065)
Q Consensus 794 --------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~---~~~~~-----~~~~~~~l~~~l~~~~~~~~ 857 (1065)
..++++++||.+.........+..... ......+++.. ...+. +......+...+.......+
T Consensus 180 ~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (316)
T PF00128_consen 180 EFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGY-FDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP 258 (316)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGT-TSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST
T ss_pred HHhhhhhhhccccceeeeeccCCccccchhhhccc-cccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhhc
Confidence 224799999999986543332221110 11222222222 22111 23346777778887777777
Q ss_pred CCCcccccccCCChhhHhhhcCHH--HHHHHHHHHHhCCCeEEEEcccccCccCC
Q psy15051 858 SGKWSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAVTFAGDELGMESP 910 (1065)
Q Consensus 858 ~~~~~~~flenHD~~Rl~s~~~~~--~~kla~~ll~tlpGiP~IyyGdE~G~~~~ 910 (1065)
.....++|++|||+.|+.+.++.. +++++++++||+||+||||||||+|+.+.
T Consensus 259 ~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 259 DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 766777899999999999999865 58999999999999999999999999986
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=372.95 Aligned_cols=366 Identities=16% Similarity=0.180 Sum_probs=232.2
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC-CCCCCcC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN-GDIGYDI 631 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~-~~~GY~~ 631 (1065)
|.+.++++|||+|+++|+. ..+.|+++ |++++ |+|||+||||+||||||++++. .+|||++
T Consensus 390 p~~~~~~vIYElHvg~~~~--e~~~gtf~---------------~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~ 452 (897)
T PLN02960 390 PKVPKSLRIYECHVGISGS--EPKISSFK---------------EFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKV 452 (897)
T ss_pred CCCCCCcEEEEEecccccC--CCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCc
Confidence 4456789999999998864 23568888 99976 9999999999999999999864 4599999
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCc
Q psy15051 632 SNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN 711 (1065)
Q Consensus 632 ~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1065)
++||+|+++|||++|||+||++|
T Consensus 453 ~~yfa~~~~yGtp~dfk~LVd~a--------------------------------------------------------- 475 (897)
T PLN02960 453 TNFFAVSSRFGTPDDFKRLVDEA--------------------------------------------------------- 475 (897)
T ss_pred ccCCCcccccCCHHHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999999999999
Q ss_pred ccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHH
Q psy15051 712 QNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKD 789 (1065)
Q Consensus 712 ~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~ 789 (1065)
|++||+||||+|+||++.++.+.....++. .++|.... ..|. ...|+. +|+.+++|+++|.+
T Consensus 476 --------H~~GI~VILDvV~NH~~~d~~~~L~~FDG~---~~~Yf~~~-~~g~----~~~WG~~~fNy~~~eVr~fLls 539 (897)
T PLN02960 476 --------HGLGLLVFLDIVHSYAAADEMVGLSLFDGS---NDCYFHSG-KRGH----HKRWGTRMFKYGDHEVLHFLLS 539 (897)
T ss_pred --------HHCCCEEEEEecccccCCccccchhhcCCC---ccceeecC-CCCc----cCCCCCcccCCCCHHHHHHHHH
Confidence 777777777777777777653322111121 12333221 1121 234544 67777777777776
Q ss_pred H---------------------------------------------------------HHhcCCceEEEeecCCCChHHH
Q psy15051 790 V---------------------------------------------------------VQSFPLILMIITEAYSPSLEKV 812 (1065)
Q Consensus 790 ~---------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~ 812 (1065)
. |++..|++++|||.....+..+
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt 619 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLC 619 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCcc
Confidence 6 2223358899999887766555
Q ss_pred hhhccCCCCccccccccHHHHHHh----hcCCChHHHHHHHHHHhh-cCCCCCcccccccCCCh-----hhHhhhcCHH-
Q psy15051 813 AKYYGTGDTQGTHLSVNYEIMNKF----GATSNAKDLENVVNAYLK-SLPSGKWSSWMVGGHSI-----TRIATRYSPD- 881 (1065)
Q Consensus 813 ~~y~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-~~~~~~~~~~flenHD~-----~Rl~s~~~~~- 881 (1065)
...... ..|||+.+++.+++.+ ........-...+...+. ......-.+.|.+|||+ .++..++.+.
T Consensus 620 ~P~~~G--GLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~ 697 (897)
T PLN02960 620 EPTSQG--GLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKN 697 (897)
T ss_pred ccCCCC--CCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCch
Confidence 443332 3678887777665432 111100000000110000 00011112349999999 5555554321
Q ss_pred ------------H----HHH--HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCC
Q psy15051 882 ------------L----VDA--MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQ 943 (1065)
Q Consensus 882 ------------~----~kl--a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~ 943 (1065)
| .++ ++++++ .||+||+|||+|+|.... .+..||....+ -.+..++
T Consensus 698 ~~k~~~~~~~~lRa~al~~~~rllt~~~-~Pg~pLlFMG~EFGh~e~----~~~PdP~n~~t-----------f~~s~Ld 761 (897)
T PLN02960 698 KESSPAVKELLLRGVSLHKMIRLITFTL-GGSAYLNFMGNEFGHPER----VEFPRASNNFS-----------FSLANRR 761 (897)
T ss_pred hhhhcccChhhhhhhhHHHHHHHHHHHh-CCCCCEeeCccccCChhh----hhCcCCCCccc-----------cccccCC
Confidence 1 111 234444 489999999999997431 12223320000 0234566
Q ss_pred CCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEE--ccCCcEEEEEEEcCCc
Q psy15051 944 WNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS--TPNNYVFILTRTEGST 1021 (1065)
Q Consensus 944 W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l--~~~~~viaf~R~~~~~ 1021 (1065)
|+-... ...+.+++++|+|++||+++|+|..|..... ..+++|+||.|.
T Consensus 762 W~Ll~~-------------------------~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~---- 812 (897)
T PLN02960 762 WDLLED-------------------------GVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG---- 812 (897)
T ss_pred cccccC-------------------------hhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC----
Confidence 765321 1245699999999999999999976654333 334579999993
Q ss_pred EEEEEEECCCCcE----EEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1022 SVYLIINLNSRTE----TVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1022 ~vlVv~N~s~~~~----~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.... .+.++ .+|.++++++|+...++
T Consensus 813 ~llvV~NFsp~~~~~~Y~vgvP----~~G~y~eilNSD~~~yG 851 (897)
T PLN02960 813 PLLFAFNFHPTNSYEEYEVGVE----EAGEYELILNTDEVKYG 851 (897)
T ss_pred CeEEEEeCCCCCcCcCceECCC----CCCcEEEEEeCchhhcC
Confidence 5999999997532 23333 35899999998876543
|
|
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=338.52 Aligned_cols=327 Identities=14% Similarity=0.197 Sum_probs=206.2
Q ss_pred ccceEEEEec-ccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcc
Q psy15051 558 KNTVIYQILV-PSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v-~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~ 636 (1065)
.+.||+|-|- .++.. ..|+++ ||++||||||+||||+|||+|++++.+. |||++.|||.
T Consensus 23 ~~~v~~Q~F~W~~~~~----~gg~~~---------------~i~~kldyL~~LGvtaIWL~P~~~s~s~-hGY~~~D~y~ 82 (428)
T PLN00196 23 AGQVLFQGFNWESWKQ----NGGWYN---------------FLMGKVDDIAAAGITHVWLPPPSHSVSE-QGYMPGRLYD 82 (428)
T ss_pred CCCEEEEeeccCCCCC----CCcCHH---------------HHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCccccCC
Confidence 4468888776 44422 346788 9999999999999999999999998764 9999999999
Q ss_pred cC-CCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 637 VG-KDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 637 id-p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+| ++|||.+|||+||++|
T Consensus 83 ld~~~fGt~~elk~Lv~~a------------------------------------------------------------- 101 (428)
T PLN00196 83 LDASKYGNEAQLKSLIEAF------------------------------------------------------------- 101 (428)
T ss_pred CCcccCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 99 5999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhh---hc--cCCCCCcceeecCCC------CCCCCCCCCCCc------cccC
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKS---AQ--KIDPYTNYYVWKDGL------NGKPGTPPNNWK------HINI 778 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~---~~--~~~~~~d~y~~~~~~------dG~p~~~~~~W~------~ln~ 778 (1065)
|++||+||+|+|+||++.++.-+... .. ....+.+|+...... ++. . ....|. .||+
T Consensus 102 ----H~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~~~~~~~~~~lpDLn~ 175 (428)
T PLN00196 102 ----HGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGT-G-NLDTGADFAAAPDIDH 175 (428)
T ss_pred ----HHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCC-C-ceeCCCCCCCCCccCC
Confidence 55555555555555555433210000 00 011123332110000 010 0 000011 1999
Q ss_pred CCHHHHHHHHHHHHh-----------------------------cCCceEEEeecCCCC---------------hHHHhh
Q psy15051 779 TSREVMRSQKDVVQS-----------------------------FPLILMIITEAYSPS---------------LEKVAK 814 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~-----------------------------~~~~~~ligE~~~~~---------------~~~~~~ 814 (1065)
.||+|+++|.++++. .. +.+++||.|... ...+..
T Consensus 176 ~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~-p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~ 254 (428)
T PLN00196 176 LNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTE-PSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVN 254 (428)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccC-CcEEEEEEeccccccccCCccccchhhHHHHHH
Confidence 999999999988322 12 478999999751 112223
Q ss_pred hccCCC-CccccccccHHHHHHhhcCCChHHHHHHHH------HHhhcCCCCCcccccccCCChhhHhhhcC--HHHHHH
Q psy15051 815 YYGTGD-TQGTHLSVNYEIMNKFGATSNAKDLENVVN------AYLKSLPSGKWSSWMVGGHSITRIATRYS--PDLVDA 885 (1065)
Q Consensus 815 y~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~flenHD~~Rl~s~~~--~~~~kl 885 (1065)
+++... .....+.|+|.+...+......+ .-..+. ......|...+ +|++|||+.|+.+..+ .++.++
T Consensus 255 ~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~P~~aV--tFvdNHDT~r~~~~~~~~~~~~~l 331 (428)
T PLN00196 255 WVDRVGGAASPATVFDFTTKGILNVAVEGE-LWRLRGADGKAPGVIGWWPAKAV--TFVDNHDTGSTQHMWPFPSDKVMQ 331 (428)
T ss_pred HHHhcCCccCcceeecccchHHHHHHhcCC-chhhhhhcccCcchhhcChhhce--eeccCCCCccccccCCCccchHHH
Confidence 333111 11112234443332111111001 111111 11223343333 4999999999988764 456799
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCc
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNY 965 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~ 965 (1065)
|++++||+||+||||||+=+ +|
T Consensus 332 AyA~iLT~pG~P~IyYg~~~-------------------------------------~~--------------------- 353 (428)
T PLN00196 332 GYAYILTHPGNPCIFYDHFF-------------------------------------DW--------------------- 353 (428)
T ss_pred HHHHHHcCCCcceEeeCCCc-------------------------------------Cc---------------------
Confidence 99999999999999999411 11
Q ss_pred ccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCC
Q psy15051 966 WTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045 (1065)
Q Consensus 966 ~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~ 1045 (1065)
.+.+.+++|+++||++++++.|+++.+..+++++++.| ++.++|.+|..-..-. . .|
T Consensus 354 -------------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~---~~~~~~~i~~~~~~~~----~---~~ 410 (428)
T PLN00196 354 -------------GLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEI---DGKVIVKIGSRYDVSH----L---IP 410 (428)
T ss_pred -------------cHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEE---CCEEEEEECCCCCccc----c---Cc
Confidence 13458999999999999999999999999999999999 3679999998522100 0 13
Q ss_pred CcEEEEEccCC
Q psy15051 1046 GDVAIFTSSVN 1056 (1065)
Q Consensus 1046 ~~~~v~~~s~~ 1056 (1065)
..+++.+++..
T Consensus 411 ~~~~~~~~g~~ 421 (428)
T PLN00196 411 EGFQVVAHGNG 421 (428)
T ss_pred ccceEEEecCC
Confidence 44777777653
|
|
| >PRK10785 maltodextrin glucosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=362.64 Aligned_cols=218 Identities=18% Similarity=0.238 Sum_probs=156.2
Q ss_pred cCchhhhcccceEEEecccccCcCCC-----C------------------------------cccccchhhhhhhhHhhh
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNND-----G------------------------------IGDLRGKNVRKRYLELTL 66 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~~-----g------------------------------~Gdl~gi~~kL~yl~~~L 66 (1065)
...|+|++++|||||||+||.+++++ + .|||+||++|||||| +|
T Consensus 113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~-~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLK-KL 191 (598)
T ss_pred CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHH-Hc
Confidence 34578999999999999999987751 1 399999999999999 99
Q ss_pred CCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCC
Q psy15051 67 GLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDS 145 (1065)
Q Consensus 67 Gv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~g 145 (1065)
||| ++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++|
T Consensus 192 Gv~---------------~I~L~-Pif~s~-s~hgY--------d~~Dy-------~~iDp~~Gt~~df~~Lv~~aH~rG 239 (598)
T PRK10785 192 GVT---------------ALYLN-PIFTAP-SVHKY--------DTEDY-------RHVDPQLGGDAALLRLRHATQQRG 239 (598)
T ss_pred CCC---------------EEEeC-CcccCC-CCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCC
Confidence 999 44555 666554 46899 67777 777779999999999997 79999
Q ss_pred CEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCC
Q psy15051 146 LHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGL 225 (1065)
Q Consensus 146 i~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~ 225 (1065)
|||| +|+ |+||++ .+|+||+...... +
T Consensus 240 ikVi--------lD~-------V~NH~~----------~~~~~f~~~~~~~-----------~----------------- 266 (598)
T PRK10785 240 MRLV--------LDG-------VFNHTG----------DSHPWFDRHNRGT-----------G----------------- 266 (598)
T ss_pred CEEE--------EEE-------CCCcCC----------CCCHHHHHhhccc-----------c-----------------
Confidence 9999 776 777754 5566665421000 0
Q ss_pred CCCCCCCCCCCCCCCccc-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15051 226 PSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCA 304 (1065)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln 304 (1065)
.....-..|+.++| |.+.. . | .+ |..+ ..+||||
T Consensus 267 ----ga~~~~~spy~dwf~~~~~~-------------~-~------~~-w~g~--------------------~~lPdLN 301 (598)
T PRK10785 267 ----GACHHPDSPWRDWYSFSDDG-------------R-A------LD-WLGY--------------------ASLPKLD 301 (598)
T ss_pred ----ccccCCCCCcceeeEECCCC-------------C-c------CC-cCCC--------------------CcCcccc
Confidence 00000112344444 22100 0 0 00 1111 4799999
Q ss_pred CCCCcccccccccccCCCCCccccccchhhhHHHHHHHH----HHHHHHHc--CCCeeeecCccccccCCCCCCCCCCCc
Q psy15051 305 VPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC----ILEFWLKR--GVDGFGMDSVLKLYEHESFANEPRLPE 378 (1065)
Q Consensus 305 ~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~Wl~~--GvDGfRlDav~~l~~~~~~~d~p~~~~ 378 (1065)
+.||+|+ ++|++ +++||++. ||||||||+|+++.+...
T Consensus 302 ~~np~v~---------------------------~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~--------- 345 (598)
T PRK10785 302 FQSEEVV---------------------------NEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGG--------- 345 (598)
T ss_pred CCCHHHH---------------------------HHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccC---------
Confidence 9999997 77884 89999986 999999999999875321
Q ss_pred CCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCCCCCC
Q psy15051 379 AAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSADRQPS 425 (1065)
Q Consensus 379 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~~~~~ 425 (1065)
....++|++++|+.+.+ .|+..++||..
T Consensus 346 -------------------~~~~~~f~~~~~~~vk~~~pd~~ligE~~ 374 (598)
T PRK10785 346 -------------------ARNNLQHVAGITQAAKEENPEAYVLGEHF 374 (598)
T ss_pred -------------------ccccHHHHHHHHHHHHhhCCCeEEEEecc
Confidence 01236999999998865 49999999974
|
|
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=352.95 Aligned_cols=394 Identities=16% Similarity=0.183 Sum_probs=246.2
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCC-----------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPN----------- 624 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~----------- 624 (1065)
+.++||||+|+|.|+..+.+.....+ |+|.++|.- ...++.|+|||+||||||+|||++++.+
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~R-----GtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~ 411 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFR-----GGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCV 411 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCC-----CcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCccccccccccc
Confidence 46889999999999976543222333 666655431 1124557778888999999999998632
Q ss_pred ---------------------------CCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeeccccccc
Q psy15051 625 ---------------------------GDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNR 670 (1065)
Q Consensus 625 ---------------------------~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~ 670 (1065)
.+|||+|.+|++++++|+| +.|||+||++|
T Consensus 412 ~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~l---------------- 475 (970)
T PLN02877 412 DPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQAL---------------- 475 (970)
T ss_pred ccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHH----------------
Confidence 5699999999999999998 46899999999
Q ss_pred ccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCC
Q psy15051 671 SHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKID 750 (1065)
Q Consensus 671 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~ 750 (1065)
|++||+||||+|+||++..++|+..+.- +.
T Consensus 476 -------------------------------------------------H~~GI~VImDVVyNHt~~~g~~~~~s~l-d~ 505 (970)
T PLN02877 476 -------------------------------------------------NRIGLRVVLDVVYNHLHSSGPFDENSVL-DK 505 (970)
T ss_pred -------------------------------------------------HHCCCEEEEEECCccccCCCCcchhhcc-cC
Confidence 8888899999999999988887644321 12
Q ss_pred CCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHH--------------------------------HHhcC---
Q psy15051 751 PYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV--------------------------------VQSFP--- 795 (1065)
Q Consensus 751 ~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~--------------------------------lk~~~--- 795 (1065)
..+.||++.. .+|. .....++...+.+++.|+++|.+. +++..
T Consensus 506 ~vP~YY~r~~-~~G~-~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~ 583 (970)
T PLN02877 506 IVPGYYLRRN-SDGF-IENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLER 583 (970)
T ss_pred CCCCceEEEC-CCCC-cccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhh
Confidence 2346776553 3554 222222333777889999999887 22232
Q ss_pred -----CceEEEeecCCCChH-HHhhhccCCCC--ccc-cccccHHHHHHhhcCCCh------------------------
Q psy15051 796 -----LILMIITEAYSPSLE-KVAKYYGTGDT--QGT-HLSVNYEIMNKFGATSNA------------------------ 842 (1065)
Q Consensus 796 -----~~~~ligE~~~~~~~-~~~~y~~~~~~--~~~-d~~~~~~~~~~~~~~~~~------------------------ 842 (1065)
+.++|+||.|..... ......+.... .+. -..|+..+++++++....
T Consensus 584 ~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~ 663 (970)
T PLN02877 584 DGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGE 663 (970)
T ss_pred cccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccc
Confidence 468999999975211 00000000000 011 235788888887642100
Q ss_pred HH-------HHHHHHHH----hhc------------------CC--------CCCcccccccCCChhhHhhhcC------
Q psy15051 843 KD-------LENVVNAY----LKS------------------LP--------SGKWSSWMVGGHSITRIATRYS------ 879 (1065)
Q Consensus 843 ~~-------l~~~l~~~----~~~------------------~~--------~~~~~~~flenHD~~Rl~s~~~------ 879 (1065)
.. ....+..- +.. +. ...-.++|+++||+..+.+++.
T Consensus 664 ~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~ 743 (970)
T PLN02877 664 DVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPME 743 (970)
T ss_pred hhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCC
Confidence 00 01111110 000 00 1112346999999988887641
Q ss_pred ---H---HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCC
Q psy15051 880 ---P---DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953 (1065)
Q Consensus 880 ---~---~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs 953 (1065)
. ++.+++++++++++|||+|+.|+|+..+... |.+++|++. .-..++|+... .+|.
T Consensus 744 ~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~-------d~nSYnSgD----------~~N~lDw~~~~-nn~~ 805 (970)
T PLN02877 744 ISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSL-------DRDSYNSGD----------WFNRLDFSYDS-NNWG 805 (970)
T ss_pred CCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCC-------CCCCCcCch----------hhheecccccc-Cccc
Confidence 1 2466889999999999999999999888763 333333332 12456777533 2333
Q ss_pred CCCCCC-CCCCCccc-------ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe-------EEEcc----CCcEEEE
Q psy15051 954 KAKSWL-PVHPNYWT-------LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-------KISTP----NNYVFIL 1014 (1065)
Q Consensus 954 ~~~~wl-~~~~~~~~-------~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~----~~~viaf 1014 (1065)
.+.|-. ....+|.- .+......+-....++||.||+|||++|+|+.++. .++.. .++||+|
T Consensus 806 ~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~ 885 (970)
T PLN02877 806 VGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIVM 885 (970)
T ss_pred cCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEEE
Confidence 331100 00001100 01111112224578899999999999999987653 33332 2489999
Q ss_pred EEEcCC-------------cEEEEEEECCCCcEEEEcCCC
Q psy15051 1015 TRTEGS-------------TSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1015 ~R~~~~-------------~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
.-.++. +.++||+|.+.+.++++++.+
T Consensus 886 ~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~ 925 (970)
T PLN02877 886 SIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPAL 925 (970)
T ss_pred EEcCCCCccccccccccccCcEEEEEcCCCccEEEecccc
Confidence 887531 579999999999999998863
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=352.44 Aligned_cols=392 Identities=16% Similarity=0.250 Sum_probs=241.2
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCC----------
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPN---------- 624 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~---------- 624 (1065)
-++++||||+|+|+|+..+.+.... .+|+|.+.+.- ...++.|+|||+||||||+|||||+..+
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~-----~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~ 323 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAE-----LRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVAD 323 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcC-----cCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccc
Confidence 3678899999999998654332211 22555544320 0123457777788999999999998631
Q ss_pred -----------------------------------------------------CCCCCcCCCCcccCCCCCC-------H
Q psy15051 625 -----------------------------------------------------GDIGYDISNHTEVGKDFGT-------M 644 (1065)
Q Consensus 625 -----------------------------------------------------~~~GY~~~dy~~idp~~Gt-------~ 644 (1065)
.+|||+|.+|++++++|++ +
T Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri 403 (898)
T TIGR02103 324 IQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARI 403 (898)
T ss_pred cccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHH
Confidence 2599999999999999987 4
Q ss_pred HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCc
Q psy15051 645 EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGM 724 (1065)
Q Consensus 645 edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi 724 (1065)
+|||+||++| |++||
T Consensus 404 ~Efk~mV~al-----------------------------------------------------------------H~~Gi 418 (898)
T TIGR02103 404 KEFREMVQAL-----------------------------------------------------------------NKTGL 418 (898)
T ss_pred HHHHHHHHHH-----------------------------------------------------------------HHCCC
Confidence 7999999999 88888
Q ss_pred EEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHH--------------
Q psy15051 725 KILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV-------------- 790 (1065)
Q Consensus 725 ~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~-------------- 790 (1065)
+||||+|+|||+..++.+.....+ ..+.||+... .+|. .....+|..++.++++|+++|.+.
T Consensus 419 ~VIlDVVyNHt~~~g~~~~s~ld~--~~P~YY~r~~-~~G~-~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFR 494 (898)
T TIGR02103 419 NVVMDVVYNHTNASGPNDRSVLDK--IVPGYYHRLN-EDGG-VENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFR 494 (898)
T ss_pred EEEEEeecccccccCccCcccccc--cCcHhhEeeC-CCCC-eecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 888888889998877665433322 1234554332 2343 222334545888899999998887
Q ss_pred ------------------HHhcCCceEEEeecCCCCh-HHHhhhccCCCC--ccc-cccccHHHHHHhhcCC--Ch----
Q psy15051 791 ------------------VQSFPLILMIITEAYSPSL-EKVAKYYGTGDT--QGT-HLSVNYEIMNKFGATS--NA---- 842 (1065)
Q Consensus 791 ------------------lk~~~~~~~ligE~~~~~~-~~~~~y~~~~~~--~~~-d~~~~~~~~~~~~~~~--~~---- 842 (1065)
+++..|+++++||.|.... .....+.+.... .+. -..|+..+++++++.. +.
T Consensus 495 fDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~ 574 (898)
T TIGR02103 495 FDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDAL 574 (898)
T ss_pred EechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCcccccccc
Confidence 3345679999999997521 111111111110 011 1357788888876421 11
Q ss_pred --------------H-----------H---HHHHHHHHhh-cC----------------------------CCCCccccc
Q psy15051 843 --------------K-----------D---LENVVNAYLK-SL----------------------------PSGKWSSWM 865 (1065)
Q Consensus 843 --------------~-----------~---l~~~l~~~~~-~~----------------------------~~~~~~~~f 865 (1065)
. . ....+..-+. .+ ....-.++|
T Consensus 575 ~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inY 654 (898)
T TIGR02103 575 RQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINY 654 (898)
T ss_pred ccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheee
Confidence 0 0 0011111000 00 011123469
Q ss_pred ccCCChhhHhhhcC---------H---HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccccc
Q psy15051 866 VGGHSITRIATRYS---------P---DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKV 933 (1065)
Q Consensus 866 lenHD~~Rl~s~~~---------~---~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~ 933 (1065)
++.||+.++.+++. . ++.+++++++++++|||+|++|+|+..+... |.++++++.
T Consensus 655 vs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~-------~~nSY~sgD------ 721 (898)
T TIGR02103 655 VSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSF-------DRDSYDSGD------ 721 (898)
T ss_pred eeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCC-------CCCCCcCch------
Confidence 99999988877641 1 2346889999999999999999999888763 333333321
Q ss_pred ccCCCCCcCCCCcccccCCCCC--------CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe---
Q psy15051 934 CRDGSRVPFQWNDQENAGFSKA--------KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY--- 1002 (1065)
Q Consensus 934 ~rd~~R~~m~W~~~~~~gFs~~--------~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~--- 1002 (1065)
.-..++|+...+ +|..+ ..|--..+--...+......+-..+.++||.||+||+++|+|+.++.
T Consensus 722 ----~~N~vdw~~~~~-~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I 796 (898)
T TIGR02103 722 ----WFNRVDFSGQDN-NWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEV 796 (898)
T ss_pred ----hhheeccccccc-ccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHH
Confidence 123456665332 22222 11210000000001111111224688999999999999999987653
Q ss_pred ----EEEcc----CCcEEEEEEEcC-----------CcEEEEEEECCCCcEEEEcCC
Q psy15051 1003 ----KISTP----NNYVFILTRTEG-----------STSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1003 ----~~l~~----~~~viaf~R~~~-----------~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
.+... .+++++|.-.++ -+.++||+|.+.+.+++ ++.
T Consensus 797 ~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~ 852 (898)
T TIGR02103 797 MKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPD 852 (898)
T ss_pred HhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEE-ecc
Confidence 33332 158999988753 25799999999999887 654
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=342.50 Aligned_cols=362 Identities=17% Similarity=0.232 Sum_probs=227.7
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHH-hhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGII-EKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~-~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
++++|||+|++.|+. ....|+++ +++ ++|+|||+||||+||||||++++. .+|||+++|||
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~---------------~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~f 290 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYR---------------EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFF 290 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCc
Confidence 568999999998853 22357777 765 569999999999999999999875 56999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+++|||++|||+||++|
T Consensus 291 a~~~~~Gtp~dlk~LVd~a------------------------------------------------------------- 309 (758)
T PLN02447 291 AVSSRSGTPEDLKYLIDKA------------------------------------------------------------- 309 (758)
T ss_pred ccccccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH---
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV--- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~--- 790 (1065)
|++||+||||+|+||++.++..-....++ ....||. .+..|. ...|.. +|+.+++|+++|.+.
T Consensus 310 ----H~~GI~VilDvV~nH~~~~~~~gl~~fDg--~~~~Yf~--~~~~g~----~~~w~~~~~N~~~~eVr~fLl~~~~~ 377 (758)
T PLN02447 310 ----HSLGLRVLMDVVHSHASKNTLDGLNGFDG--TDGSYFH--SGPRGY----HWLWDSRLFNYGNWEVLRFLLSNLRW 377 (758)
T ss_pred ----HHCCCEEEEEeccccccccccccccccCC--CCccccc--cCCCCC----cCcCCCceecCCCHHHHHHHHHHHHH
Confidence 55555566666666665433100000000 1112222 111111 122333 666666666666665
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
|++..|++++|||.....|......
T Consensus 378 Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~ 457 (758)
T PLN02447 378 WLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPV 457 (758)
T ss_pred HHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccC
Confidence 3334568999999988766655554
Q ss_pred ccCCCCccccccccHHHHHHh----hc-CCChHHHHHHHHHHhh-cCCCCCcccccccCCChhhH---------h-----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKF----GA-TSNAKDLENVVNAYLK-SLPSGKWSSWMVGGHSITRI---------A----- 875 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~-~~~~~~~~~~flenHD~~Rl---------~----- 875 (1065)
...| .|||+.++..+++.+ +. ....-.+..+...... .+... .+.|.+|||+... .
T Consensus 458 ~~GG--lGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~--~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 458 QEGG--VGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEK--CVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred CCCc--CCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCc--eEeccCCcCeeecCcchhHhhhcchhhh
Confidence 4332 678888877766643 22 1111112222222222 12222 2248899999443 2
Q ss_pred hhcCH--------HH----HHHHHHHHHhCCCe-EEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcC
Q psy15051 876 TRYSP--------DL----VDAMNMLTLLLPGT-AVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942 (1065)
Q Consensus 876 s~~~~--------~~----~kla~~ll~tlpGi-P~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m 942 (1065)
..... .| .|++.+++|++||. +|+|||+|+|.... +++...+ +... ......
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew-~Dfpr~~-----n~ws---------~~~~~~ 598 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEW-IDFPREG-----NGWS---------YDKCRR 598 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchh-ccCcccc-----cccC---------cccccC
Confidence 11111 11 25566889999999 79999999999742 1111000 0000 012335
Q ss_pred CCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc---cCCcEEEEEEEcC
Q psy15051 943 QWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST---PNNYVFILTRTEG 1019 (1065)
Q Consensus 943 ~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~---~~~~viaf~R~~~ 1019 (1065)
+|+-... +....+.+.+|+|+|++|++++|+|..| +.++. .+++|+||.|.
T Consensus 599 ~W~L~d~-----------------------~~l~~~~l~~f~~~L~~l~~~~~~L~~~-~~~i~~~d~~~~Viaf~R~-- 652 (758)
T PLN02447 599 RWDLADA-----------------------DHLRYKFLNAFDRAMMHLDEKYGFLTSE-HQYVSRKDEGDKVIVFERG-- 652 (758)
T ss_pred CccccCC-----------------------CchhhhHHHHHHHHHHHHHhcCccccCC-CceeeeecCCCCEEEEEeC--
Confidence 5654210 0012356889999999999999999755 44443 35689999995
Q ss_pred CcEEEEEEECCCC----cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1020 STSVYLIINLNSR----TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1020 ~~~vlVv~N~s~~----~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.. ...|.++ .+|.++++++|+...++
T Consensus 653 --~ll~V~NF~p~~s~~~Y~igvp----~~G~y~~ilnSD~~~fG 691 (758)
T PLN02447 653 --DLVFVFNFHPTNSYSDYRVGCD----KPGKYKIVLDSDAWEFG 691 (758)
T ss_pred --CeEEEEeCCCCCCCCCcEECCC----CCCeEEEEECCCchhcC
Confidence 39999999973 2334444 46999999999887664
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=322.19 Aligned_cols=374 Identities=14% Similarity=0.175 Sum_probs=275.9
Q ss_pred ccceEEEEecccccCcCCCC-CCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC---------CCCCC
Q psy15051 558 KNTVIYQILVPSFKDSNNDG-IGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG---------PNGDI 627 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~-~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~---------~~~~~ 627 (1065)
.-.|.+.++|.++....+.. .+.| |-....+||++|||++|||+|++++ +..+.
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L----------------~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~ 113 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEAL----------------ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDG 113 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHh----------------cChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCC
Confidence 34578899999997533221 1222 4456679999999999999999999 88889
Q ss_pred CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 628 GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 628 GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
||++.| +.|||.|||++||++|+++|
T Consensus 114 gyDi~d-~~Idp~~GT~eDf~~L~~~A----------------------------------------------------- 139 (688)
T TIGR02455 114 NFDRIS-FDIDPLLGSEEELIQLSRMA----------------------------------------------------- 139 (688)
T ss_pred CCCccc-CccCcccCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999 59999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcce-----------eecCCCCC------------
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY-----------VWKDGLNG------------ 764 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y-----------~~~~~~dG------------ 764 (1065)
|++||+||+|+|+||||..|+ |+.+..+.++|++|| +|.+...+
T Consensus 140 ------------h~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~ 206 (688)
T TIGR02455 140 ------------AAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCD 206 (688)
T ss_pred ------------HHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHH
Confidence 999999999999999999999 888877799999999 88776544
Q ss_pred ---------C---------CCCCCCCCcc--------------------------ccCCCHH--HHHHHH-HHHHh----
Q psy15051 765 ---------K---------PGTPPNNWKH--------------------------INITSRE--VMRSQK-DVVQS---- 793 (1065)
Q Consensus 765 ---------~---------p~~~~~~W~~--------------------------ln~~n~~--v~~~l~-~~lk~---- 793 (1065)
. |....++|.. |||.||. +++.|. ++++.
T Consensus 207 ~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~l 286 (688)
T TIGR02455 207 ELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDCL 286 (688)
T ss_pred HHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHHh
Confidence 1 2222346643 9999999 999999 66221
Q ss_pred ------------------------------------------cCCceEEEeecCCCChHHHhhhccCCCCccccccccHH
Q psy15051 794 ------------------------------------------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYE 831 (1065)
Q Consensus 794 ------------------------------------------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~ 831 (1065)
-+++.++++|.... ++.+..|++. ++|+.|+|.
T Consensus 287 G~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~-~~d~~~~~g~----~~dl~~dF~ 361 (688)
T TIGR02455 287 GARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT-IDDIAAMSHG----GADLSYDFI 361 (688)
T ss_pred ccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC-HHHHHHHhCC----Ccceeeccc
Confidence 12378899998887 8888888873 688888887
Q ss_pred HHHHhh---cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHh---------------------------------
Q psy15051 832 IMNKFG---ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIA--------------------------------- 875 (1065)
Q Consensus 832 ~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~--------------------------------- 875 (1065)
.+..+. ...++.-+...++.....--+......|+.|||+-.+-
T Consensus 362 t~p~~~~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m 441 (688)
T TIGR02455 362 TRPAYHHALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEI 441 (688)
T ss_pred ccHHHHHHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHH
Confidence 766542 34577778877777654331444444599999981110
Q ss_pred -hh----------------------------cC-----------HHHHHHHHHHHHh----CCCeEEEEcc---------
Q psy15051 876 -TR----------------------------YS-----------PDLVDAMNMLTLL----LPGTAVTFAG--------- 902 (1065)
Q Consensus 876 -s~----------------------------~~-----------~~~~kla~~ll~t----lpGiP~IyyG--------- 902 (1065)
.+ .| .++.+++.+++++ +||+|+||||
T Consensus 442 ~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~ 521 (688)
T TIGR02455 442 YERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLA 521 (688)
T ss_pred HHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeeccccccccccc
Confidence 00 01 1256777888888 9999999999
Q ss_pred -----cccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCC-----C----CCCCCC-Cccc
Q psy15051 903 -----DELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK-----S----WLPVHP-NYWT 967 (1065)
Q Consensus 903 -----dE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~-----~----wl~~~~-~~~~ 967 (1065)
+|+||.... |- .++||+... . .+|... -|.
T Consensus 522 ~~~v~deigmGD~~--------------------------------wl--~rggfs~~~~~p~~~~s~~~lP~~~~~Yg- 566 (688)
T TIGR02455 522 AEAVAELMGDGDTR--------------------------------WI--HRGGYDLADLAPEAEASAEGLPKARALYG- 566 (688)
T ss_pred ccchhhhhccCccc--------------------------------cc--cCCCcccCCCCchhhhccCCCCCCcCCCC-
Confidence 777766431 11 134444331 1 334322 344
Q ss_pred ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc-CCcEEEEEEEc--CCcEEEEEEECCCCcEEEEcCCCccC
Q psy15051 968 LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP-NNYVFILTRTE--GSTSVYLIINLNSRTETVDLSDCIEN 1044 (1065)
Q Consensus 968 ~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~-~~~viaf~R~~--~~~~vlVv~N~s~~~~~v~l~~~~~~ 1044 (1065)
|++.|...+.|+++.+|+|+++||+++++..|.+..+.. ++.|+++.|.. ++..+|+|.|||.+++.+.|....-.
T Consensus 567 -nv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~ 645 (688)
T TIGR02455 567 -SLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA 645 (688)
T ss_pred -CHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC
Confidence 899999999999999999999999999999999988776 45899999983 34789999999998777666432223
Q ss_pred CCcEEEEEccC
Q psy15051 1045 GGDVAIFTSSV 1055 (1065)
Q Consensus 1045 ~~~~~v~~~s~ 1055 (1065)
++.+..++++.
T Consensus 646 ~~~~~dl~~~~ 656 (688)
T TIGR02455 646 PGPVVDIIHES 656 (688)
T ss_pred CCCceeccCCC
Confidence 44555555544
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=345.38 Aligned_cols=300 Identities=22% Similarity=0.291 Sum_probs=203.0
Q ss_pred cceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 31 TVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 31 ~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
+|||||+|+||.++++ +|+|||+||+++||||+ +|||+ ++|++ |++.+++.+|||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~-~LGv~---------------aiwl~-Pi~~s~~~~~gY-- 61 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLK-ELGVD---------------AIWLS-PIFESPQADHGY-- 61 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHH-HhCCC---------------EEEeC-CCCCCCccCCCc--
Confidence 5899999999999999 99999999999999999 99999 56666 888888899999
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| +.|||.|||++||++|++ +|++||+|| +|+ |+||++
T Consensus 62 ------~~~Dy-------~~id~~~Gt~~d~~~li~~~H~~gi~vi--------~D~-------V~NH~s---------- 103 (505)
T COG0366 62 ------DVSDY-------TKVDPHFGTEEDFKELVEEAHKRGIKVI--------LDL-------VFNHTS---------- 103 (505)
T ss_pred ------cccch-------hhcCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccCcCC----------
Confidence 67766 677778999999999997 699999999 887 899977
Q ss_pred CccccccCCCccee-----ccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhh
Q psy15051 184 GQNFLFQGRPVNLM-----SYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQ 258 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~-----~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1065)
.+|.||+....... +|+.|+..+. +...+.++ ...++++.|..
T Consensus 104 ~~~~~f~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~~----------------------~~~~~~~~~~~-------- 151 (505)
T COG0366 104 DEHPWFKEARSSKPNPKRSDYYIWRDPDP--DGTPPNNW----------------------FSVFGGDAWTW-------- 151 (505)
T ss_pred CccHHHHHHhcCCCCcccCCCceEccCcc--cCCCCCcc----------------------hhhcCCCCCCc--------
Confidence 88888877543221 2222211111 00000000 00011111100
Q ss_pred hccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHH
Q psy15051 259 ALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEI 338 (1065)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1065)
+....+++|.|. ..|||||+.||+||
T Consensus 152 --------~~~~~~~~~~~~-------------------~~~~dln~~n~~v~--------------------------- 177 (505)
T COG0366 152 --------GNTGEYYLHLFS-------------------SEQPDLNWENPEVR--------------------------- 177 (505)
T ss_pred --------CCCCceEEEecC-------------------CCCCCcCCCCHHHH---------------------------
Confidence 112334499999 89999999999997
Q ss_pred HHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CC
Q psy15051 339 TLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GN 417 (1065)
Q Consensus 339 ~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~ 417 (1065)
+++.++++||+++||||||+||++++.+..... +. .....+.++.++.++....-+-.+ ..
T Consensus 178 ~~~~~~~~~W~~~gvDGfRlDa~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
T COG0366 178 EELLDVVKFWLDKGVDGFRLDAAKHISKDFGLP--PS----------------EENLTFLEEIHEYLREENPDVLIYGEA 239 (505)
T ss_pred HHHHHHHHHHHHcCCCeEEeccHhhhccccCCC--Cc----------------ccccccHHHHHHHHHHHHHHHHhcCcc
Confidence 789999999999999999999999999965433 10 011335556666666664422222 12
Q ss_pred ccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------------HHHHHHhcCc-CC
Q psy15051 418 QSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------------VSHFIYCGIV-DD 482 (1065)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------------~~~~Wq~~m~-~~ 482 (1065)
...+++......+. . ... ....+.+++|.|+|.+..+. ++..|+..+. ..
T Consensus 240 ~~~~~~~~~~~~~~---~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
T COG0366 240 ITDVGEAPGAVKED---F-----------ADN-TSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLND 304 (505)
T ss_pred eeeeeccccccchh---h-----------hhc-cchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhcccc
Confidence 22222222111110 0 000 12233566777777766431 6688888886 45
Q ss_pred cccchhhcccCccccchhhhhhhh
Q psy15051 483 TSALMVMNERRLSTIASRTMAAMS 506 (1065)
Q Consensus 483 ~~~~~~~~nhd~~r~~sr~~~~~s 506 (1065)
.+.+.+..|||++|..+|++.+..
T Consensus 305 ~~~~~~~~~hD~~r~~~~~~~~~~ 328 (505)
T COG0366 305 GWNNLFLSNHDQPRLLSRFGDDVG 328 (505)
T ss_pred CchhhhhhhcCccceeeeccCCcc
Confidence 666667899999999999987654
|
|
| >PRK09505 malS alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=342.77 Aligned_cols=343 Identities=14% Similarity=0.146 Sum_probs=198.1
Q ss_pred cCchhhhcccceEEEecccccCcCC----------CC--------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcce
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNN----------DG--------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIY 83 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~----------~g--------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~ 83 (1065)
.+.+.||+++|||||+||||.++++ ++ .|||+||++||+||+ +||||+||++|..++...+
T Consensus 181 ~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~-~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQ-QLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHH-HcCCCEEEeCccccccccc
Confidence 3457899999999999999998872 22 299999999999999 9999988888877753211
Q ss_pred ee--ecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccc
Q psy15051 84 IS--FWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDI 160 (1065)
Q Consensus 84 ~~--~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~ 160 (1065)
+. ...+.| ...+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 260 ~~~g~~g~~~----~~~yhgY--------~~~D~-------~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi--------lD~ 312 (683)
T PRK09505 260 VGGGTKGDFP----HYAYHGY--------YTLDW-------TKLDANMGTEADLRTLVDEAHQRGIRIL--------FDV 312 (683)
T ss_pred cccccccCCC----cCCCCCC--------Ccccc-------ccCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE
Confidence 00 000001 1367898 66666 777789999999999997 799999999 998
Q ss_pred ccccccCCCCCccccccCcccccCccccccCCCc---ceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy15051 161 ESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV---NLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEG 237 (1065)
Q Consensus 161 ~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1065)
|+||++..+.. ..++.+|+..-. ..........-+|.+......|++. . .... ++.
T Consensus 313 -------V~NH~~~~~~~----d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~--------~~~~-~~~ 371 (683)
T PRK09505 313 -------VMNHTGYATLA----DMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFN-D--------YINF-SDS 371 (683)
T ss_pred -------CcCCCcccccc----cccccchhhhhhhccccccccCcccccccccccccccccc-c--------cccc-CCc
Confidence 99998622221 234556655210 0000000011122211111111110 0 0000 112
Q ss_pred CCCcccccccccccCCcchh-----------hhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q psy15051 238 PSSEKYWGDILERTVSSNSL-----------QALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAV- 305 (1065)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~- 305 (1065)
+..+.+|+..|.++.-.+.. ..+..+. .+......++.|. ..+||+|+
T Consensus 372 ~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~-te~~~~~~lp~f~-------------------~~~p~~~~~ 431 (683)
T PRK09505 372 TAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK-TESTQASGLPVFY-------------------ANKPDTRAK 431 (683)
T ss_pred cccccccccccccccccccccccccccccccccCCccc-ccCccccccchhh-------------------hcCcccccc
Confidence 22334454444221100000 0000000 0111233355555 57788876
Q ss_pred --CCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCC
Q psy15051 306 --PNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGR 382 (1065)
Q Consensus 306 --~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~ 382 (1065)
+||+|+ ++|+++++||++ .||||||||||+||-++-
T Consensus 432 ~~~n~~Vr---------------------------~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~F-------------- 470 (683)
T PRK09505 432 AIDGYTPR---------------------------DYLTHWLSQWVRDYGIDGFRVDTAKHVELPA-------------- 470 (683)
T ss_pred cccCHHHH---------------------------HHHHHHHHHHHHhcCCCEEEEechHhCCHHH--------------
Confidence 678886 889999999997 699999999999995420
Q ss_pred CCCCCCCccccccCCchhHHHHHHHHHHHHHh----hCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccc
Q psy15051 383 PDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK----FGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAE 458 (1065)
Q Consensus 383 ~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~ 458 (1065)
...-..++++.+++||++-.+ .++..++||........ ..++ + +.+
T Consensus 471 -----------W~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~---------------~~y~-~---~~f 520 (683)
T PRK09505 471 -----------WQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK---------------SDYY-R---HGF 520 (683)
T ss_pred -----------HHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhh---------------HHHH-h---hcC
Confidence 011245667888888865332 13467888875322211 0111 1 346
Q ss_pred cccccchhhhHH---------HHHHHHhcCcC-Ccccch-hhcccCccccchhhhhh
Q psy15051 459 SMEHRADLLHQV---------VSHFIYCGIVD-DTSALM-VMNERRLSTIASRTMAA 504 (1065)
Q Consensus 459 ~~~~~f~l~~~~---------~~~~Wq~~m~~-~~~~~~-~~~nhd~~r~~sr~~~~ 504 (1065)
++++||++.... +...++..... .....+ ++.|||++|..++..+.
T Consensus 521 Dsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~~~~ 577 (683)
T PRK09505 521 DAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGGQSY 577 (683)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhcCch
Confidence 788999866332 12223222211 112222 56999999999988654
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=312.06 Aligned_cols=299 Identities=13% Similarity=0.153 Sum_probs=189.7
Q ss_pred cccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccc
Q psy15051 596 GLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLY 675 (1065)
Q Consensus 596 ~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~ 675 (1065)
+++|+++|+||++||||+|||+|++++.+. |||++.|||.+|++|||.+||++||++||++||+||+|+|+||
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~-~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH------ 100 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPSQSLAP-EGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH------ 100 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCcCCCC-CCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc------
Confidence 359999999999999999999999998765 9999999999999999999999999999666666666666643
Q ss_pred cchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCch----hhHhhhccCCC
Q psy15051 676 CHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD----WFIKSAQKIDP 751 (1065)
Q Consensus 676 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~----wf~~~~~~~~~ 751 (1065)
++.... ++... .+.+
T Consensus 101 -----------------------------------------------------------~~g~~~~~~~~y~~~-~g~~- 119 (401)
T PLN02361 101 -----------------------------------------------------------RVGTTQGHGGMYNRY-DGIP- 119 (401)
T ss_pred -----------------------------------------------------------ccCCCCCCCCCcccC-CCCc-
Confidence 321100 00000 0000
Q ss_pred CCcce---eec--------CCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHh-----------------cC--------
Q psy15051 752 YTNYY---VWK--------DGLNGKPGTPPNNWKHINITSREVMRSQKDVVQS-----------------FP-------- 795 (1065)
Q Consensus 752 ~~d~y---~~~--------~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~lk~-----------------~~-------- 795 (1065)
.+|. +.. ...+..+..+. ||+.||+|+++++++++. +.
T Consensus 120 -~~wd~~~~~~~~~g~~~~~~~~~~~~lpD-----Ld~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~ 193 (401)
T PLN02361 120 -LPWDEHAVTSCTGGLGNRSTGDNFNGVPN-----IDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYI 193 (401)
T ss_pred -CCCCccccccccCCCCCccCCCCCccCCc-----cCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 0000 000 00000101111 999999999999988432 11
Q ss_pred ---CceEEEeecCCCCh----------------HHHhhhccCC--CCccccccccHHHHHHhhcCCChHHHHHHHHH---
Q psy15051 796 ---LILMIITEAYSPSL----------------EKVAKYYGTG--DTQGTHLSVNYEIMNKFGATSNAKDLENVVNA--- 851 (1065)
Q Consensus 796 ---~~~~ligE~~~~~~----------------~~~~~y~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~--- 851 (1065)
.+.+++||.|.... ..+..++... ....||+++...+.+++. .++.+....
T Consensus 194 ~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~-----~~~~~l~~~~~~ 268 (401)
T PLN02361 194 EAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVK-----GQWWRLRDAQGK 268 (401)
T ss_pred HhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHh-----hhHHHHhhhhcC
Confidence 14789999997621 1233444421 123455555555555552 122222111
Q ss_pred ---HhhcCCCCCcccccccCCChhhHhhhcC--HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccc
Q psy15051 852 ---YLKSLPSGKWSSWMVGGHSITRIATRYS--PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFG 926 (1065)
Q Consensus 852 ---~~~~~~~~~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~ 926 (1065)
.....|.. .+.|++|||+.|+.+..+ .++.++|++++||.||+|+||||+=+
T Consensus 269 ~~~~~~~~p~~--aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~--------------------- 325 (401)
T PLN02361 269 PPGVMGWWPSR--AVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFY--------------------- 325 (401)
T ss_pred CcchhhcChhh--ceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeecccc---------------------
Confidence 11112222 234999999999988654 45678889999999999999998611
Q ss_pred cccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc
Q psy15051 927 KDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006 (1065)
Q Consensus 927 ~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~ 1006 (1065)
+|+ .++.+.+++|++|||++++++.|+++.+.
T Consensus 326 ----------------~~~--------------------------------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~ 357 (401)
T PLN02361 326 ----------------DWG--------------------------------GSIHDQIVKLIDIRKRQDIHSRSSIRILE 357 (401)
T ss_pred ----------------CCC--------------------------------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 011 13678999999999999999999999999
Q ss_pred cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1007 ~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
.++++++-.-. ++++|=++.. .....+..+++.+++..
T Consensus 358 a~~~~y~a~i~---~~~~~k~g~~---------~~~p~~~~~~~~~~g~~ 395 (401)
T PLN02361 358 AQSNLYSAIID---EKLCMKIGDG---------SWCPSGREWTLATSGHR 395 (401)
T ss_pred ecCCeEEEEEC---CeEEEEecCC---------CCCCCCCCceEEEecCc
Confidence 88877765542 2344444332 11111235777777654
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-32 Score=318.10 Aligned_cols=359 Identities=20% Similarity=0.267 Sum_probs=231.3
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
-|+..+|||+|+.+|+. + ...|+++ +.+++|+|||+||||||+||||.+++. .+|||+++.|
T Consensus 141 ~~e~~vIYElHvGs~~~-~-~~~~~~e---------------~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~ 203 (628)
T COG0296 141 FWEPIVIYELHVGSFTP-D-RFLGYFE---------------LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGY 203 (628)
T ss_pred CCCCceEEEEEeeeccC-C-CCcCHHH---------------HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCccee
Confidence 37799999999999987 2 4456666 889999999999999999999999974 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
|++..+|||++|||+||++|
T Consensus 204 yAp~sryGtPedfk~fVD~a------------------------------------------------------------ 223 (628)
T COG0296 204 YAPTSRYGTPEDFKALVDAA------------------------------------------------------------ 223 (628)
T ss_pred ccccccCCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH--
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV-- 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~-- 790 (1065)
|++||.||||+|+||.+.+...+...- + ..+|-..+...|. .+.|+. .++..++||++|.+.
T Consensus 224 -----H~~GIgViLD~V~~HF~~d~~~L~~fd-g----~~~~e~~~~~~~~----~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 224 -----HQAGIGVILDWVPNHFPPDGNYLARFD-G----TFLYEHEDPRRGE----HTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred -----HHcCCEEEEEecCCcCCCCcchhhhcC-C----ccccccCCccccc----CCCcccchhccCcHHHHHHHHHHHH
Confidence 888888888899999987655443311 0 0111111111222 345666 555588899888887
Q ss_pred ------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhhc
Q psy15051 791 ------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKYY 816 (1065)
Q Consensus 791 ------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~ 816 (1065)
|+...|..+.|+|.|...+.....-.
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~ 369 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVA 369 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeec
Confidence 11123367889999988665444433
Q ss_pred cCCCCccccccccHHHHH-HhhcCCChHHHHHHHHHHhhcCC---CCCcccccccCCChh-----hHhhhc------CHH
Q psy15051 817 GTGDTQGTHLSVNYEIMN-KFGATSNAKDLENVVNAYLKSLP---SGKWSSWMVGGHSIT-----RIATRY------SPD 881 (1065)
Q Consensus 817 ~~~~~~~~d~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~flenHD~~-----Rl~s~~------~~~ 881 (1065)
.+| .++++..++..+. .+..-......++.-.... .+. ..+-...+..|||+. .+..++ ...
T Consensus 370 ~gG--~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~-tf~~~y~~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a 446 (628)
T COG0296 370 IGG--LGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGEL-TFGLLYAFSENVVLPLSHDEVVHGKRSLGERMPGDAWQKFA 446 (628)
T ss_pred ccc--cchhhhhhhhhHhhHHHhcccCccccccccCCC-ccccccccceeEeccccccceeecccchhccCCcchhhhHH
Confidence 332 4567777766333 2211100000111000000 000 011122388999995 233333 123
Q ss_pred HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCC
Q psy15051 882 LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPV 961 (1065)
Q Consensus 882 ~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~ 961 (1065)
.+|++++++++.||+|+||||+|+|+..+...+. ..+|.....+
T Consensus 447 ~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~-------------------------~~~w~~L~~~----------- 490 (628)
T COG0296 447 NLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFS-------------------------SLDWLLLDQA----------- 490 (628)
T ss_pred HHHHHHHHHHhCCCceeeecchhhccCCCCcccC-------------------------CCChhhhhhc-----------
Confidence 6788899999999999999999999998752222 2233221100
Q ss_pred CCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-----CeEEEccC---CcEEEEEEE---cCCcEEEEEEECC
Q psy15051 962 HPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-----DYKISTPN---NYVFILTRT---EGSTSVYLIINLN 1030 (1065)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-----~~~~l~~~---~~viaf~R~---~~~~~vlVv~N~s 1030 (1065)
......+.+..+.+.|.++-+..+++..- .+.++..+ ++|++|.|. .+.+.++++.|++
T Consensus 491 ----------~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~ 560 (628)
T COG0296 491 ----------VREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFT 560 (628)
T ss_pred ----------cccchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCC
Confidence 00011245677888888888888887543 34555542 369999995 3455577888877
Q ss_pred CCcE-EEEcCCCccCCCcEEEEEccCC
Q psy15051 1031 SRTE-TVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1031 ~~~~-~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
.... ...+.-. ..+.++.++.++.
T Consensus 561 ~~~~~~y~~~~~--~~g~~~~~lntd~ 585 (628)
T COG0296 561 PVPRVDYRVGVP--VAGRWREVLNTDL 585 (628)
T ss_pred CCcccccccCCc--ccccEEEeccchH
Confidence 6443 2333321 4577888877643
|
|
| >PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=308.85 Aligned_cols=259 Identities=21% Similarity=0.303 Sum_probs=169.9
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|||+||++|||||| +|||+ ++|++ |+++++..+||| ++.+| ++|||+|
T Consensus 1 Gd~~gi~~kLdyl~-~lGv~---------------~I~l~-Pi~~~~~~~~gY--------~~~d~-------~~vd~~~ 48 (316)
T PF00128_consen 1 GDFRGIIDKLDYLK-DLGVN---------------AIWLS-PIFESPNGYHGY--------DPSDY-------YAVDPRF 48 (316)
T ss_dssp SSHHHHHHTHHHHH-HHTES---------------EEEES-S-EESSSSTTTT--------SESEE-------EEESTTT
T ss_pred CCHHHHHHhhHHHH-HcCCC---------------ceecc-cccccccccccc--------cceee-------ecccccc
Confidence 89999999999999 99999 66666 777777788999 55555 5666699
Q ss_pred CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccC
Q psy15051 130 FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKH 208 (1065)
Q Consensus 130 Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v 208 (1065)
||++||++||+ ||++||+|| +|+ |+||++ ..|+||+......
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~Vi--------lD~-------V~NH~~----------~~~~~~~~~~~~~------------ 91 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVI--------LDV-------VPNHTS----------DDHPWFQDSLNYF------------ 91 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEE--------EEE-------ETSEEE----------TTSHHHHHHHTHT------------
T ss_pred chhhhhhhhhhccccccceEE--------Eee-------eccccc----------ccccccccccccc------------
Confidence 99999999998 699999999 887 888866 6666765421110
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhc--cccCCCCCCCCccccccccCCCCCC
Q psy15051 209 PPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQAL--QRVYPPPHHSMTLPHQYSMSMPPRH 285 (1065)
Q Consensus 209 ~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~ 285 (1065)
..++.++| |.+. ....++++.... ..+....... .+.+.
T Consensus 92 ---------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------- 133 (316)
T PF00128_consen 92 ---------------------------DNPYSDYYYWRDG-EGSPPGNWYSYFGGSNWEYDDWGD---EYQFW------- 133 (316)
T ss_dssp ---------------------------TSTTGTTBEEESB-TSTTSSTBBCSTTTSSEESCHHTH---CHSSS-------
T ss_pred ---------------------------ccccccceeeccc-cccccccccccccccccccccccc---ccccc-------
Confidence 00111111 2111 000011110000 0000000000 02333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccc
Q psy15051 286 SMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLY 365 (1065)
Q Consensus 286 ~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~ 365 (1065)
..+||||++||+|| ++|+++++||+++||||||+|+|+++.
T Consensus 134 ------------~~~~dln~~n~~v~---------------------------~~i~~~~~~w~~~giDGfR~D~~~~~~ 174 (316)
T PF00128_consen 134 ------------SDLPDLNYENPEVR---------------------------EYIIDVLKFWIEEGIDGFRLDAAKHIP 174 (316)
T ss_dssp ------------TTSEEBETTSHHHH---------------------------HHHHHHHHHHHHTTESEEEETTGGGSS
T ss_pred ------------cccchhhhhhhhhh---------------------------hhhcccccchhhceEeEEEEccccccc
Confidence 68999999999997 889999999999999999999999996
Q ss_pred cCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCC
Q psy15051 366 EHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGS 444 (1065)
Q Consensus 366 ~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (1065)
+ +++++|++.+.+. |+..++||......+........ .++
T Consensus 175 ~------------------------------------~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~-~~~-- 215 (316)
T PF00128_consen 175 K------------------------------------EFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYD-GYF-- 215 (316)
T ss_dssp H------------------------------------HHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHH-GTT--
T ss_pred h------------------------------------hhHHHHhhhhhhhccccceeeeeccCCccccchhhhc-ccc--
Confidence 5 8888998877665 89999999866554321111000 000
Q ss_pred CCcccccCCCcccccccccchh--------------------hhHHHHHHHHhcCcCCcccchhhcccCccccchhhhhh
Q psy15051 445 GNQNWRAGNQNRAESMEHRADL--------------------LHQVVSHFIYCGIVDDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 445 ~~~~~~~g~~~~e~~~~~~f~l--------------------~~~~~~~~Wq~~m~~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...+.++|.. +.. .+..|+...+......++.+|||++|..++++..
T Consensus 216 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~ 282 (316)
T PF00128_consen 216 ------------DLDSVFDFPDYGLRSSFFDFWRHGDGDASDLAN-WLSSWQSSYPDPYRAVNFLENHDTPRFASRFGNN 282 (316)
T ss_dssp ------------SHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHH-HHHHHHHHSTTGGGEEEESSHTTSSTHHHHTTTH
T ss_pred ------------ccchhhcccccccccchhhhhccccchhhhhhh-hhhhhhhhhcccceeeecccccccccchhhhccc
Confidence 0011122221 111 6677888887766777777999999999999987
Q ss_pred hh
Q psy15051 505 MS 506 (1065)
Q Consensus 505 ~s 506 (1065)
..
T Consensus 283 ~~ 284 (316)
T PF00128_consen 283 RD 284 (316)
T ss_dssp HH
T ss_pred ch
Confidence 54
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A .... |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=312.02 Aligned_cols=352 Identities=21% Similarity=0.280 Sum_probs=229.7
Q ss_pred cccceEEEEecccccCcCCCC----CCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCC-------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDG----IGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGP------- 623 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~----~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~------- 623 (1065)
|.++||||+|+|.|+..+++- .|++. |+++. |+|||+||||||+||||+...
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~---------------gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~ 233 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYL---------------GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDK 233 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhcccee---------------hhccccHHHHHHHhCCceEEEecceEEeccccccc
Confidence 899999999999999633321 25555 88888 999999999999999999863
Q ss_pred ---CCCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 624 ---NGDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 624 ---~~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
.++|||+|.+||+++++|.+ ..|||.||+++
T Consensus 234 ~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~l--------------------------------------- 274 (697)
T COG1523 234 SGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKAL--------------------------------------- 274 (697)
T ss_pred cccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHH---------------------------------------
Confidence 35799999999999999953 56999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh-hhccCCCCCcceeecCCCCCCCCCCCCC
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK-SAQKIDPYTNYYVWKDGLNGKPGTPPNN 772 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~-~~~~~~~~~d~y~~~~~~dG~p~~~~~~ 772 (1065)
|++||.||||||+|||+........ ..++ --+.+|++... +|. ....++
T Consensus 275 --------------------------HkaGI~VILDVVfNHTae~~~~g~t~~f~~--id~~~Yyr~~~-dg~-~~N~TG 324 (697)
T COG1523 275 --------------------------HKAGIEVILDVVFNHTAEGNELGPTLSFRG--IDPNYYYRLDP-DGY-YSNGTG 324 (697)
T ss_pred --------------------------HHcCCEEEEEEeccCcccccCcCccccccc--CCcCceEEECC-CCC-eecCCc
Confidence 8888888888888999742111110 1111 12356665554 355 222233
Q ss_pred Ccc-ccCCCHHHHHHHHHHHHh----c----------------------CC-------------ceEEEeecCCCChHHH
Q psy15051 773 WKH-INITSREVMRSQKDVVQS----F----------------------PL-------------ILMIITEAYSPSLEKV 812 (1065)
Q Consensus 773 W~~-ln~~n~~v~~~l~~~lk~----~----------------------~~-------------~~~ligE~~~~~~~~~ 812 (1065)
.+. +|.++|.||+.+.|.|+- + .+ ...+|||.|+..+.
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kliAepwD~g~~-- 402 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKLIAEPWDIGPG-- 402 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCceeeecchhhcCC--
Confidence 332 999999999999998432 0 11 34467777753210
Q ss_pred hhhccCCCC------ccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC--
Q psy15051 813 AKYYGTGDT------QGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS-- 879 (1065)
Q Consensus 813 ~~y~~~~~~------~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~-- 879 (1065)
.| +-|.- ...+-.|+...+..+.+ ......+.+.+......+. .....++|+.+||..++.+.+.
T Consensus 403 -gy-qvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~ 480 (697)
T COG1523 403 -GY-QVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYN 480 (697)
T ss_pred -Cc-ccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhc
Confidence 11 11100 11122333333333333 2344555555544321221 1233456999999977665531
Q ss_pred -------------------------------------HH-HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcc
Q psy15051 880 -------------------------------------PD-LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPE 921 (1065)
Q Consensus 880 -------------------------------------~~-~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~ 921 (1065)
++ ..+.+++.++++.|+||+-.|+|.|.+...
T Consensus 481 ~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~g---------- 550 (697)
T COG1523 481 HKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQYG---------- 550 (697)
T ss_pred cCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccccccccccc----------
Confidence 01 234556777888999999999999997653
Q ss_pred ccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCC
Q psy15051 922 GYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 922 ~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~ 1001 (1065)
+.+.+|.+..-..++|+. .....++++.|.||+|||++|+|+...
T Consensus 551 -------nnNsYcqdn~inwlDW~~----------------------------~~~~~l~~f~~~lIaLRk~~~af~~~~ 595 (697)
T COG1523 551 -------NNNAYCQDNEINWLDWST----------------------------EANNDLVEFTKGLIALRKAHPAFRRRS 595 (697)
T ss_pred -------ccccccCCcccceeccCc----------------------------cccHHHHHHHHHHHHHhhhcchhcccc
Confidence 123455565566777771 123579999999999999999997633
Q ss_pred eEE----------Ec-------------cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCC
Q psy15051 1002 YKI----------ST-------------PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1002 ~~~----------l~-------------~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
+.. +. .....+++......++++|++|...+++.+.++..
T Consensus 596 f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~~~~~~~lp~~ 658 (697)
T COG1523 596 FFEGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATAEPVEFELPED 658 (697)
T ss_pred hhhccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCccccceecccc
Confidence 322 21 01245666665557799999999999888888863
|
|
| >TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=293.61 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=188.6
Q ss_pred cccceEEEecccccCcCCCCcccccch--hhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGK--NVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi--~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
...|.+.+||.|+-...+. .-|.-+ ..-.+||+ +|||+.||++|.+.++++|- | -..|+.+.||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~--s~~~~L~~~~~wdyL~-~LGV~~iwl~P~~~SGgi~g--~-----~~tP~~D~gy---- 115 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGC--SVLEALADDALWKALS-EIGVQGIHNGPIKLSGGIRG--R-----EFTPSIDGNF---- 115 (688)
T ss_pred hcCeeEEecchhhcCCCCC--cHHHHhcChHHHHHHH-HhCCCEEEeCcceecccccc--c-----CCCCCCCCCC----
Confidence 3568899999999644332 223333 33379999 99999666666666655432 1 1237778899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
+|.+ +.|||.|||++||++|++ ||++||+|| +|+ |+|||| .+
T Consensus 116 ----Di~d--------~~Idp~~GT~eDf~~L~~~Ah~~G~~vi--------~Dl-------VpnHTs----------~g 158 (688)
T TIGR02455 116 ----DRIS--------FDIDPLLGSEEELIQLSRMAAAHNAITI--------DDI-------IPAHTG----------KG 158 (688)
T ss_pred ----Cccc--------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------CCCCCC----------CC
Confidence 5666 467779999999999997 799999999 887 999988 88
Q ss_pred cccccCCCcceeccccC--------cccccCCCCCCCCCCCccCCCCCCCCCC-----CC--CCCCCCCCcccccccc--
Q psy15051 186 NFLFQGRPVNLMSYVLG--------RELRKHPPHSTPHLPHVCCPSGLPSTSR-----PD--IEGEGPSSEKYWGDIL-- 248 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~--------~~~d~v~nh~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~-- 248 (1065)
|. |+.+..+..+|-.. ..+.+-|.. +.++.+... .. .+|--++... ...+
T Consensus 159 hd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~----------~~~~~~~~l~~~~~~~L~~~g~i~~~l~--rviF~~ 225 (688)
T TIGR02455 159 AD-FRLAELAHGDYPGLYHMVEIREEDWALLPEV----------PAGRDAVNLLPAQCDELKAKHYIVGQLQ--RVIFFE 225 (688)
T ss_pred cc-hHHHhhcCCCCCCceeeccccccccccCCCC----------CcccccccccHHHHHHHhhccCcccccc--cceecC
Confidence 88 76665545555211 111122111 111000000 00 0000001000 0011
Q ss_pred cccCCcchh----------hhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc--ccccccc
Q psy15051 249 ERTVSSNSL----------QALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPK--VLMVPNA 316 (1065)
Q Consensus 249 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~--v~~~~~~ 316 (1065)
.....++|. +.++.|| +|.|. ..||||||.||. |+
T Consensus 226 pg~e~s~Wt~d~~v~g~dG~~Rrw~Y---------~H~F~-------------------~~QPdLNw~dPs~av~----- 272 (688)
T TIGR02455 226 PGIKDTDWSATGEITGVDGKTRRWVY---------LHYFK-------------------EGQPSLNWLDPTFAAQ----- 272 (688)
T ss_pred CCcccCCceecccccCCCccchhhhh---------hhhcc-------------------CCCCccCccCccHHHH-----
Confidence 122233343 2345566 99998 899999999999 86
Q ss_pred cccCCCCCccccccchhhhHHHHHHH-HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCcccccc
Q psy15051 317 DIAWNPSCQTTVVDCQMFCYEITLLL-CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYT 395 (1065)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~ 395 (1065)
++|+ ++++||++.|++|||+||++||.++++. .|
T Consensus 273 ----------------------~~~~gdal~~w~~lG~~GfRLDAvpfLg~e~~~-----------------------~~ 307 (688)
T TIGR02455 273 ----------------------QLIIGDALHAIDCLGARGLRLDANGFLGVERRA-----------------------EG 307 (688)
T ss_pred ----------------------HHHHHHHHHHHHHhccccceeccccceeeecCC-----------------------CC
Confidence 7899 8999999999999999999999986531 16
Q ss_pred CCchhHHHHHHHHHHHHH---hhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH
Q psy15051 396 IDQPETYEMLYKWRTLVE---KFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV 470 (1065)
Q Consensus 396 ~~~~~~~~~~~~~r~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~ 470 (1065)
...+|+|.+++.+|++++ ++++..+.+|-|++..+--.++ | .++||.|+|...+..
T Consensus 308 ~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~----------------g---~~~dl~~dF~t~p~~ 366 (688)
T TIGR02455 308 TAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMS----------------H---GGADLSYDFITRPAY 366 (688)
T ss_pred CCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHh----------------C---CCcceeecccccHHH
Confidence 677899999999999987 3588899999999888855544 3 278999999866443
|
Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. |
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=290.98 Aligned_cols=324 Identities=15% Similarity=0.196 Sum_probs=196.2
Q ss_pred cceEEEEeccccc-CcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCccc
Q psy15051 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEV 637 (1065)
Q Consensus 559 ~~vIYei~v~~F~-d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~i 637 (1065)
....|+|+...|. +...++. -++ ||+++|+||++||||+|||+|++++.+. |||++.|||.+
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~-w~~---------------~I~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~l 560 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGR-WYM---------------ELGEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNL 560 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCc-hHH---------------HHHHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCccccccc
Confidence 4567888888886 4333321 134 9999999999999999999999998765 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhh
Q psy15051 638 GKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAES 717 (1065)
Q Consensus 638 dp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1065)
|++|||.+||++||++||++||+||+|+|+
T Consensus 561 ds~yGT~~ELk~LI~a~H~~GIkVIlDiVi-------------------------------------------------- 590 (894)
T PLN02784 561 NSRYGTIDELKDLVKSFHEVGIKVLGDAVL-------------------------------------------------- 590 (894)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECc--------------------------------------------------
Confidence 999999999999999995555555555555
Q ss_pred hhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---C--CCC----CCCCCCCc---cccCCCHHHHH
Q psy15051 718 MEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---N--GKP----GTPPNNWK---HINITSREVMR 785 (1065)
Q Consensus 718 ~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---d--G~p----~~~~~~W~---~ln~~n~~v~~ 785 (1065)
||++.. |.......+.|..++.|.... + .++ .....+|. .||+.||+||+
T Consensus 591 ---------------NH~ag~---f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 591 ---------------NHRCAH---FQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred ---------------cccccc---ccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHH
Confidence 444321 000000001111111111100 0 000 00000111 19999999999
Q ss_pred HHHHHHHh-----------------cC-----------CceEEEeecCCCC--------------hHHHhhhccCCC--C
Q psy15051 786 SQKDVVQS-----------------FP-----------LILMIITEAYSPS--------------LEKVAKYYGTGD--T 821 (1065)
Q Consensus 786 ~l~~~lk~-----------------~~-----------~~~~ligE~~~~~--------------~~~~~~y~~~~~--~ 821 (1065)
+|.++++. |. ...|++||.|... ...+..|+.... .
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~ 732 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTA 732 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCCCce
Confidence 99998432 11 1479999999861 123455554322 2
Q ss_pred ccccccccHHHHHHhhcCCChHHHHHHHHHH-------hhcCCCCCcccccccCCChhhHhhh--cCHHHHHHHHHHHHh
Q psy15051 822 QGTHLSVNYEIMNKFGATSNAKDLENVVNAY-------LKSLPSGKWSSWMVGGHSITRIATR--YSPDLVDAMNMLTLL 892 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~flenHD~~Rl~s~--~~~~~~kla~~ll~t 892 (1065)
..||+++.+.+..++.. .+.-. +... ....|..++ .|++|||+.+..+. +......++++++||
T Consensus 733 saFDfplk~~L~~A~~~----~e~wr-L~d~~g~~~glv~~~P~~AV--TFVDNHDTg~~Q~~w~~p~~k~~~AYAyILt 805 (894)
T PLN02784 733 GAFDVTTKGILHSALER----CEYWR-LSDQKGKPPGVVGWWPSRAV--TFIENHDTGSTQGHWRFPEGKEMQGYAYILT 805 (894)
T ss_pred eeechhHHHHHHHHHhc----cchhh-hhhccCCCCCeeccccCceE--EEecCCCCCCCcccCCCCccchhhHHHHHHc
Confidence 44666666666665532 11111 1111 111222233 39999999886543 223355668899999
Q ss_pred CCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHH
Q psy15051 893 LPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQA 972 (1065)
Q Consensus 893 lpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~ 972 (1065)
.||+||||||+=+|.
T Consensus 806 hpG~PcVFy~h~y~~----------------------------------------------------------------- 820 (894)
T PLN02784 806 HPGTPAVFYDHIFSH----------------------------------------------------------------- 820 (894)
T ss_pred CCCcceEEehhhhhh-----------------------------------------------------------------
Confidence 999999999875421
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 973 EKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 973 ~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
+.+-+++|+.+||+.-.=.....+++..+.++|+-.-. ++++|-+-... -++ .+.+..+++.+
T Consensus 821 -------~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~---~k~~~kiG~~~-----~~p--~~~~~~~~~~~ 883 (894)
T PLN02784 821 -------YHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIID---EKVAMKIGPGH-----YEP--PNGPQNWSVAL 883 (894)
T ss_pred -------hHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeC---CeeEEEECCcc-----cCC--CCCCCceEEEE
Confidence 11248999999999854456777777777778775543 24444443321 000 01234678877
Q ss_pred ccCC
Q psy15051 1053 SSVN 1056 (1065)
Q Consensus 1053 ~s~~ 1056 (1065)
++..
T Consensus 884 sG~~ 887 (894)
T PLN02784 884 EGQD 887 (894)
T ss_pred ecCC
Confidence 7654
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=292.21 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=99.2
Q ss_pred cccCCChhhHhhhcCHH----------HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccc
Q psy15051 865 MVGGHSITRIATRYSPD----------LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934 (1065)
Q Consensus 865 flenHD~~Rl~s~~~~~----------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~ 934 (1065)
.+++||+.|+.+.+... ..+...++.||+||+|+||||+|+++.+. .||+
T Consensus 619 lLds~dt~rfL~~~~~~~~~i~~~G~~nsLsq~lLklT~PGvPdIYqGtE~wd~sl-------vDPD------------- 678 (825)
T TIGR02401 619 VLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSL-------VDPD------------- 678 (825)
T ss_pred HcCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCCcccccccccccCC-------CCCC-------------
Confidence 57999999988876533 34555789999999999999999999986 3776
Q ss_pred cCCCCCcCCCCccccc--CCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccC---
Q psy15051 935 RDGSRVPFQWNDQENA--GFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPN--- 1008 (1065)
Q Consensus 935 rd~~R~~m~W~~~~~~--gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~--- 1008 (1065)
||+||+|+..... .... ..+ .............+.++++|++||+++|+| ..|+++.+..+
T Consensus 679 ---NRRpvd~~~r~~~L~~l~~-~~~---------~~l~~~~~dg~~Kl~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~ 745 (825)
T TIGR02401 679 ---NRRPVDYAARRAALLQLTT-PNW---------SELELWLLDGLVKLAVTAAALQLRREHPELFGQGDYQPLEAGGPG 745 (825)
T ss_pred ---ccCCCChHHHHHHHHhhhc-ccc---------hhhhccccccHHHHHHHHHHHHHHHhCHHhhhcCCeEEEeccCCC
Confidence 8999999853311 0000 000 000111123355778999999999999985 89999999764
Q ss_pred -CcEEEEEEEcCCcEEEEEEECCC
Q psy15051 1009 -NYVFILTRTEGSTSVYLIINLNS 1031 (1065)
Q Consensus 1009 -~~viaf~R~~~~~~vlVv~N~s~ 1031 (1065)
++|+||.|..+++.+|||+|...
T Consensus 746 ~~~vvaFaR~~~~~~~vvvv~R~~ 769 (825)
T TIGR02401 746 AAHVIAFARGTDRQAAIVVVTRLS 769 (825)
T ss_pred cCcEEEEEEecCCcEEEEEEecch
Confidence 58999999988889999999864
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >PRK12313 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=291.00 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=147.2
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
++..+|||||+++|+++++++.|+|+||+++| |||| +||||+||++ |++.++. ..|||
T Consensus 145 ~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~-~LGv~~i~L~----------------Pi~~~~~~~~~GY--- 204 (633)
T PRK12313 145 DRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVK-EMGYTHVEFM----------------PLMEHPLDGSWGY--- 204 (633)
T ss_pred CCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHH-HcCCCEEEeC----------------chhcCCCCCCCCC---
Confidence 36689999999999998878899999999995 9999 9999944444 5555443 46899
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|+|+|||++|||+||+ ||++||+|| +|+ |+||++
T Consensus 205 -----~~~~y-------~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vi--------lD~-------V~nH~~----------- 246 (633)
T PRK12313 205 -----QLTGY-------FAPTSRYGTPEDFMYLVDALHQNGIGVI--------LDW-------VPGHFP----------- 246 (633)
T ss_pred -----CCcCc-------CcCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC-----------
Confidence 66666 677779999999999997 799999999 777 777764
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccC
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
..+... ..++|.. . +++.+.. ..+
T Consensus 247 -----------------------------~~~~~~-----------~~~~~~~-~--~~~~~~~------------~~~- 270 (633)
T PRK12313 247 -----------------------------KDDDGL-----------AYFDGTP-L--YEYQDPR------------RAE- 270 (633)
T ss_pred -----------------------------CCcccc-----------cccCCCc-c--eeecCCC------------CCc-
Confidence 111100 0000100 0 0000000 000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
...+ ..++||+.||+|| ++|+++
T Consensus 271 ---------~~~w---------------------~~~~~n~~~~~vr---------------------------~~l~~~ 293 (633)
T PRK12313 271 ---------NPDW---------------------GALNFDLGKNEVR---------------------------SFLISS 293 (633)
T ss_pred ---------CCCC---------------------CCcccCCCCHHHH---------------------------HHHHHH
Confidence 0001 2358999999997 789999
Q ss_pred HHHHHHc-CCCeeeecCccccc-cCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCC
Q psy15051 345 LEFWLKR-GVDGFGMDSVLKLY-EHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSAD 421 (1065)
Q Consensus 345 l~~Wl~~-GvDGfRlDav~~l~-~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~ 421 (1065)
++||++. ||||||+|+|+++. ++.+ .+.+..+...| ...+ .+.++|++++++.+.+ +|+..+|
T Consensus 294 ~~~W~~~~~iDG~R~D~~~~~~~~d~~-~~~~~~~~~~~------------~~~~-~~~~~fl~~~~~~v~~~~p~~~li 359 (633)
T PRK12313 294 ALFWLDEYHLDGLRVDAVSNMLYLDYD-EEGEWTPNKYG------------GREN-LEAIYFLQKLNEVVYLEHPDVLMI 359 (633)
T ss_pred HHHHHHHhCCcEEEEcChhhhhhcccc-cccCcCCcccC------------CCCC-cHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999975 99999999998665 4433 32222111110 1223 3789999999987765 5999999
Q ss_pred CCCC
Q psy15051 422 RQPS 425 (1065)
Q Consensus 422 ~~~~ 425 (1065)
+|..
T Consensus 360 aE~~ 363 (633)
T PRK12313 360 AEES 363 (633)
T ss_pred EECC
Confidence 9964
|
|
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=271.37 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=96.2
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCccccc--CCCCCCCCCCCCC
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENA--GFSKAKSWLPVHP 963 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~--gFs~~~~wl~~~~ 963 (1065)
..++.||+||+|+||||+|+|+.+. .||+ ||+|++|+..... .....
T Consensus 706 q~lLqlT~PGVPdIYqG~E~wd~sl-------vDPD----------------NRRpvd~~~r~~~L~~l~~~-------- 754 (879)
T PRK14511 706 QTLLKLTSPGVPDVYQGTELWDFSL-------VDPD----------------NRRPVDFAARAAALARLDEG-------- 754 (879)
T ss_pred HHHHHHCcCCCCcccCcccchhccC-------CCCC----------------CCCCCChHHHHHHHhhcccc--------
Confidence 3589999999999999999999986 3666 8999999853210 00000
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccC----CcEEEEEEEcCCcEEEEEEECCCC------
Q psy15051 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPN----NYVFILTRTEGSTSVYLIINLNSR------ 1032 (1065)
Q Consensus 964 ~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~----~~viaf~R~~~~~~vlVv~N~s~~------ 1032 (1065)
.......+....+.++++|+++|+++|+| ..|++..+..+ ++++||.|..+++.++||+|....
T Consensus 755 -----~~~~~~~dg~~kl~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~~~~~~vvvv~R~~~~l~~~~ 829 (879)
T PRK14511 755 -----AELLPWDDGRIKLLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGGGGGRALTVAPRLPAGLLGAG 829 (879)
T ss_pred -----cccccCCcchHHHHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEecCCceEEEEeccccccccccC
Confidence 00000112234678999999999999999 57999999864 689999999888999999988653
Q ss_pred ---cEEEEcCCCccCCCcEEEEEccC
Q psy15051 1033 ---TETVDLSDCIENGGDVAIFTSSV 1055 (1065)
Q Consensus 1033 ---~~~v~l~~~~~~~~~~~v~~~s~ 1055 (1065)
..+|.|+.. ..++.++-++++.
T Consensus 830 ~W~dt~v~LP~~-~~~~~w~d~lTG~ 854 (879)
T PRK14511 830 GWGDTRLVLPEI-LSGGRWRDLLTGE 854 (879)
T ss_pred CcCCeEEeCCCc-cCCCceeEeccCC
Confidence 457777741 1345677777654
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=253.71 Aligned_cols=304 Identities=16% Similarity=0.230 Sum_probs=184.4
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC
Q psy15051 631 ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG 710 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
+++||+|+++|||++|||+||++|
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~a-------------------------------------------------------- 450 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEA-------------------------------------------------------- 450 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHH--------------------------------------------------------
Confidence 789999999999999999999999
Q ss_pred cccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHH
Q psy15051 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQK 788 (1065)
Q Consensus 711 ~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~ 788 (1065)
|++||+||||+|+||++.+.........+.+ ..||. . +..|. ...|+. +|+.+++|+++|.
T Consensus 451 ---------H~~GI~VILDvV~NH~~~d~~~GL~~fDGt~--~~Yf~-~-~~~g~----~~~WGs~~fnyg~~EVr~FLL 513 (872)
T PLN03244 451 ---------HGLGLLVFLDIVHSYAAADEMVGLSLFDGSN--DCYFH-T-GKRGH----HKHWGTRMFKYGDLDVLHFLI 513 (872)
T ss_pred ---------HHCCCEEEEEecCccCCCccccchhhcCCCc--cceec-c-CCCCc----cCCCCCceecCCCHHHHHHHH
Confidence 6677777777777777765432111111111 01222 1 11122 234554 6777777777777
Q ss_pred HH---------------------------------------------------------HHhcCCceEEEeecCCCChHH
Q psy15051 789 DV---------------------------------------------------------VQSFPLILMIITEAYSPSLEK 811 (1065)
Q Consensus 789 ~~---------------------------------------------------------lk~~~~~~~ligE~~~~~~~~ 811 (1065)
+. |++..|++++|||..+..|..
T Consensus 514 sna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~v 593 (872)
T PLN03244 514 SNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGL 593 (872)
T ss_pred HHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCc
Confidence 66 333456899999998875655
Q ss_pred HhhhccCCCCccccccccHHHHHHh----hc----CCChHHHHHHHHHHhhcCCCCCcccccccCCCh-----hhHhhhc
Q psy15051 812 VAKYYGTGDTQGTHLSVNYEIMNKF----GA----TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSI-----TRIATRY 878 (1065)
Q Consensus 812 ~~~y~~~~~~~~~d~~~~~~~~~~~----~~----~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~-----~Rl~s~~ 878 (1065)
....... ..|||+.++..+++.. +. .++...+...+. ...........|.||||+ .+++..+
T Consensus 594 t~Pv~~G--GLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~---~nrr~~ek~~aYsESHDqaLvGdKTlaf~l 668 (872)
T PLN03244 594 CEPTSQG--GLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI---ANKEYADKMLSYAENHNQSISGGRSFAEIL 668 (872)
T ss_pred cccCCCC--CCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh---cccCCcceEEEEecccceeccccchHHhhh
Confidence 4443332 3678888887755533 21 122222222221 111112233459999999 2233222
Q ss_pred -----------------CHHHHHHHHHHHHhCCCeE-EEEcccccCccCCCCccCCCCCccccccccccccccccCCCCC
Q psy15051 879 -----------------SPDLVDAMNMLTLLLPGTA-VTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRV 940 (1065)
Q Consensus 879 -----------------~~~~~kla~~ll~tlpGiP-~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~ 940 (1065)
+....|++.++++++||.| ++|||+|+|..... +|..-++ ..+.. -.
T Consensus 669 ~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~-dfPr~gN------------~~s~~--~a 733 (872)
T PLN03244 669 FGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERI-EFPMPSN------------NFSFS--LA 733 (872)
T ss_pred cccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchhe-eccccCC------------Ccccc--cc
Confidence 1113466667889999987 79999999997642 1100000 00000 01
Q ss_pred cCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEE--ccCCcEEEEEEEc
Q psy15051 941 PFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS--TPNNYVFILTRTE 1018 (1065)
Q Consensus 941 ~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l--~~~~~viaf~R~~ 1018 (1065)
..+|+-.. ....+.+.+++|+|++|++++++|..|..-.. ..+++|+||.|.
T Consensus 734 rrdW~Lld-------------------------~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~- 787 (872)
T PLN03244 734 NRCWDLLE-------------------------NEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG- 787 (872)
T ss_pred ccCccccC-------------------------ChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-
Confidence 23555321 01135688999999999999999975543222 235679999996
Q ss_pred CCcEEEEEEECCCC----cEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1019 GSTSVYLIINLNSR----TETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1019 ~~~~vlVv~N~s~~----~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+|||+||+.. ...|.++ .+|.++++++|+...++
T Consensus 788 ---~LLfVfNF~P~~sy~dYrIGVp----~~G~Y~eILNSD~~~FG 826 (872)
T PLN03244 788 ---PFLFIFNFHPSNSYEGYDVGVE----EAGEYQIILNSDETKYG 826 (872)
T ss_pred ---CEEEEEeCCCCCCccCCEECCC----CCCeEEEEEeCChhhhC
Confidence 59999999974 2334444 46999999999887655
|
|
| >TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=269.31 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=141.4
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~v 106 (1065)
+..+|||+++++|+++ |+|+||+++| |||| +||||+||++|. +.++. ..|||
T Consensus 137 ~~~~iYe~hv~~~~~~-----g~~~~i~~~l~dyl~-~LGvt~i~L~Pi----------------~e~~~~~~wGY---- 190 (613)
T TIGR01515 137 KPVSIYELHLGSWRHG-----LSYRELADQLIPYVK-ELGFTHIELLPV----------------AEHPFDGSWGY---- 190 (613)
T ss_pred CCceEEEEehhhccCC-----CCHHHHHHHHHHHHH-HcCCCEEEECCc----------------ccCCCCCCCCC----
Confidence 4579999999999764 9999999996 9999 999995555554 44432 36999
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|+++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 191 ----~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~Vi--------lD~-------V~NH~~------------ 232 (613)
T TIGR01515 191 ----QVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVI--------LDW-------VPGHFP------------ 232 (613)
T ss_pred ----CcccC-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccCcC------------
Confidence 66666 667779999999999997 699999999 776 777764
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCC
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYP 265 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1065)
+.+..+ ..+++. + .++..+.. ...
T Consensus 233 ----------------------------~~~~~~-----------~~~~~~-~--~y~~~~~~------------~~~-- 256 (613)
T TIGR01515 233 ----------------------------KDDHGL-----------AEFDGT-P--LYEHKDPR------------DGE-- 256 (613)
T ss_pred ----------------------------Cccchh-----------hccCCC-c--ceeccCCc------------cCc--
Confidence 111111 000010 0 00000000 000
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL 345 (1065)
Q Consensus 266 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (1065)
+ +. -..++||+.||+|| ++|++++
T Consensus 257 ---------~-----------------~~---w~~~~~~~~~~~Vr---------------------------~~l~~~~ 280 (613)
T TIGR01515 257 ---------H-----------------WD---WGTLIFDYGRPEVR---------------------------NFLVANA 280 (613)
T ss_pred ---------C-----------------CC---CCCceecCCCHHHH---------------------------HHHHHHH
Confidence 0 00 13468999999997 8899999
Q ss_pred HHHHHc-CCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCC
Q psy15051 346 EFWLKR-GVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADR 422 (1065)
Q Consensus 346 ~~Wl~~-GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~ 422 (1065)
+||++. ||||||+|+|++|.. +.+-.+ |....+. ..+...++.++|++++|+.+.+. |+..+|+
T Consensus 281 ~~W~~ey~iDG~R~D~v~~~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 281 LYWAEFYHIDGLRVDAVASMLYLDYSRDE--------GEWSPNE-----DGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred HHHHHHhCCcEEEEcCHHHhhhhcccccc--------ccccccc-----cCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 999975 999999999987753 111000 1000010 01445678999999999988765 9999999
Q ss_pred CCC
Q psy15051 423 QPS 425 (1065)
Q Consensus 423 ~~~ 425 (1065)
|..
T Consensus 348 E~~ 350 (613)
T TIGR01515 348 EES 350 (613)
T ss_pred EeC
Confidence 953
|
A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. |
| >PRK09441 cytoplasmic alpha-amylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=262.72 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=81.7
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecc
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNH 109 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~ 109 (1065)
..||.|.|=-..- .+...++||++|||||+ +||||+||++|+.++.. ...+|||. +.||
T Consensus 3 ~~~~~q~f~w~~~----~~~~~~~~I~~kldyl~-~LGvtaIwl~P~~~~~~--------------~~~~hgY~--~~D~ 61 (479)
T PRK09441 3 NGTMMQYFEWYLP----NDGKLWNRLAERAPELA-EAGITAVWLPPAYKGTS--------------GGYDVGYG--VYDL 61 (479)
T ss_pred CceEEEEEEeccC----CCccHHHHHHHHHHHHH-HcCCCEEEeCCCccCCC--------------CCCCCCCC--eecc
Confidence 4567776542221 11246779999999999 99999555555444321 13457885 8888
Q ss_pred cccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcccc
Q psy15051 110 EQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFL 188 (1065)
Q Consensus 110 ~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~ 188 (1065)
+++.+|-++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ -...|+|
T Consensus 62 ~~~~~~~~~----~~id~~fGt~~dl~~Li~~~H~~Gi~vi--------~D~-------V~NH~~--------~~~~~~~ 114 (479)
T PRK09441 62 FDLGEFDQK----GTVRTKYGTKEELLNAIDALHENGIKVY--------ADV-------VLNHKA--------GADEKET 114 (479)
T ss_pred ccccccccc----CCcCcCcCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc--------CCCccee
Confidence 888875111 379999999999999997 699999999 998 999986 1134578
Q ss_pred ccC
Q psy15051 189 FQG 191 (1065)
Q Consensus 189 f~~ 191 (1065)
|+.
T Consensus 115 ~~~ 117 (479)
T PRK09441 115 FRV 117 (479)
T ss_pred eee
Confidence 863
|
|
| >PRK05402 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-25 Score=275.65 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=80.5
Q ss_pred cccceEEEecccccCc-CCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 29 KNTVIYQILVPSFKDS-NNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~-~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
+..+|||||+++|+++ ++++.|+|+||++|| |||| +||||+||++|. +..+. ..|||
T Consensus 240 ~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk-~LGv~~i~L~Pi----------------~e~~~~~~~GY--- 299 (726)
T PRK05402 240 APISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVK-EMGFTHVELLPI----------------AEHPFDGSWGY--- 299 (726)
T ss_pred CCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHH-HcCCCEEEECCc----------------ccCCCCCCCCC---
Confidence 4679999999999987 666789999999996 9999 999995555554 44332 36899
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|+|+|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 300 -----~~~~y-------~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vi--------lD~-------V~NH~~ 341 (726)
T PRK05402 300 -----QPTGY-------YAPTSRFGTPDDFRYFVDACHQAGIGVI--------LDW-------VPAHFP 341 (726)
T ss_pred -----CcccC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC
Confidence 66666 677779999999999997 799999999 776 777763
|
|
| >TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=267.01 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=77.1
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc-ccccCcccee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA-VKTWSRRWIV 106 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~gy~~~v 106 (1065)
|+++|||||++++|.+ .|||+||+++||||| +||||+||++|+.+ .+ ..+|||
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~-~LGv~~i~L~Pi~~----------------~~~~~~~GY---- 144 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLA-DLGITAIELMPVAQ----------------FPGTRGWGY---- 144 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHH-HcCCCEEEeCcccc----------------CCCCCCCCC----
Confidence 7899999999999976 399999999999999 99999555555444 33 246899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|+++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 145 ----~~~~~-------~~~~~~~G~~~e~k~lV~~aH~~Gi~Vi--------lD~-------V~NH~~ 186 (542)
T TIGR02402 145 ----DGVLP-------YAPHNAYGGPDDLKALVDAAHGLGLGVI--------LDV-------VYNHFG 186 (542)
T ss_pred ----CccCc-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCCCC
Confidence 55555 566779999999999998 799999999 776 777753
|
Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. |
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=252.98 Aligned_cols=91 Identities=30% Similarity=0.494 Sum_probs=74.6
Q ss_pred cceEEEEecccccCcCCCC--CCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCC--CCCCCcCCC
Q psy15051 559 NTVIYQILVPSFKDSNNDG--IGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPN--GDIGYDISN 633 (1065)
Q Consensus 559 ~~vIYei~v~~F~d~~~d~--~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~--~~~GY~~~d 633 (1065)
+.+|||+|||.|+...+.. .|.++ |.++| |++||+||+|||+||||+++.+ ..|||.|++
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~---------------~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~n 293 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYL---------------GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTN 293 (757)
T ss_pred heEEEEEeeccccCCCCccccccchh---------------hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeE
Confidence 7899999999998765421 22255 88899 9999999999999999999953 259999999
Q ss_pred CcccCCCCCCHH------HHHHHHHHHHhcCCceeec
Q psy15051 634 HTEVGKDFGTME------DFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 634 y~~idp~~Gt~e------dfk~LV~~aH~~Gi~VIlD 664 (1065)
||++-.+|||.+ |||+||++||..||-|+||
T Consensus 294 FFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLD 330 (757)
T KOG0470|consen 294 FFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLD 330 (757)
T ss_pred eecccccccCCCcccchHHHHHHHHHHhhCCcEEehh
Confidence 999999999999 9999999994444433333
|
|
| >PRK12568 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=263.72 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=146.2
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
++..+|||||+++|+.+.+.+.++++|++++ |+||| +||||.|+++|..+ .+. ..|||
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk-~LGvt~I~LmPi~e----------------~~~~~~wGY--- 303 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQ-QLGFTHIELLPITE----------------HPFGGSWGY--- 303 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHH-HcCCCEEEECcccc----------------CCCCCCCCC---
Confidence 3568999999999998766678899999999 59999 99999555555443 332 46999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++..| ++++|+||+.+||++||+ +|++||+|| +|+ |+||++
T Consensus 304 -----~~~~~-------~a~~~~~G~~~dfk~lV~~~H~~Gi~VI--------lD~-------V~nH~~----------- 345 (730)
T PRK12568 304 -----QPLGL-------YAPTARHGSPDGFAQFVDACHRAGIGVI--------LDW-------VSAHFP----------- 345 (730)
T ss_pred -----CCCcC-------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccCC-----------
Confidence 66666 677889999999999998 699999999 777 777764
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCC-CCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcccc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPH-LPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1065)
+. +.+ ..++|. ..|.... +....
T Consensus 346 -----------------------------~d~~~l------------~~fdg~----~~Ye~~d-----------~~~g~ 369 (730)
T PRK12568 346 -----------------------------DDAHGL------------AQFDGA----ALYEHAD-----------PREGM 369 (730)
T ss_pred -----------------------------cccccc------------ccCCCc----cccccCC-----------CcCCc
Confidence 11 000 000110 0000000 00000
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
+ ..+. .+ .+||.||+|| .+|++
T Consensus 370 ~----------~~W~--------------------~~-~~N~~~peVr---------------------------~~li~ 391 (730)
T PRK12568 370 H----------RDWN--------------------TL-IYNYGRPEVT---------------------------AYLLG 391 (730)
T ss_pred c----------CCCC--------------------Ce-ecccCCHHHH---------------------------HHHHH
Confidence 0 0111 11 5899999997 78999
Q ss_pred HHHHHHHc-CCCeeeecCccccccC-CCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccC
Q psy15051 344 ILEFWLKR-GVDGFGMDSVLKLYEH-ESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSA 420 (1065)
Q Consensus 344 ~l~~Wl~~-GvDGfRlDav~~l~~~-~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~ 420 (1065)
+++||++. ||||||+|||++|... .+-.+ |...+|... ...+.++++||+++++.+.+ +|+..+
T Consensus 392 ~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~--------g~w~pn~~g-----g~en~ea~~Fl~~ln~~v~~~~P~~~~ 458 (730)
T PRK12568 392 SALEWIEHYHLDGLRVDAVASMLYRDYGRAE--------GEWVPNAHG-----GRENLEAVAFLRQLNREIASQFPGVLT 458 (730)
T ss_pred HHHHHHHHhCceEEEEcCHhHhhhhcccccc--------ccccccccC-----CccChHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999965 9999999999988752 21111 111111111 33456899999999998875 599999
Q ss_pred CCCCC
Q psy15051 421 DRQPS 425 (1065)
Q Consensus 421 ~~~~~ 425 (1065)
|+|.+
T Consensus 459 IAEes 463 (730)
T PRK12568 459 IAEES 463 (730)
T ss_pred EEEcC
Confidence 99964
|
|
| >PRK13840 sucrose phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=250.58 Aligned_cols=346 Identities=19% Similarity=0.268 Sum_probs=242.4
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhH-HHHHcCcCEEEeCCCCc-CCCCCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKID-YLKELGVETLWLTPFYS-GPNGDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLd-YLk~LGvnaI~L~PI~~-~~~~~~GY~~~dy~ 635 (1065)
++.|+.-.+.|++.+ |||+ ||+++|| ||++| |++|||+|+|+ ++..++||+|.||+
T Consensus 2 ~n~~~litY~Ds~~~------GdL~---------------gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~ 59 (495)
T PRK13840 2 KNKVQLITYADRLGD------GGLK---------------SLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHT 59 (495)
T ss_pred CCceEEEEeccCCCC------CCHh---------------HHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChh
Confidence 456788888888853 8999 9999999 59999 99999999994 56778999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
.|||+|||++||++|++
T Consensus 60 ~VDP~fGt~eDf~~L~~--------------------------------------------------------------- 76 (495)
T PRK13840 60 KVDPRLGDWDDVKALGK--------------------------------------------------------------- 76 (495)
T ss_pred hcCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence 99999999999999974
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC--CCC------------CCCCCCC-------
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL--NGK------------PGTPPNN------- 772 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~--dG~------------p~~~~~~------- 772 (1065)
||+||+|+|+||||.+|+||++++++ +++|.|||+|.+.. +|. |..+...
T Consensus 77 -------giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~ 149 (495)
T PRK13840 77 -------THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGK 149 (495)
T ss_pred -------CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCC
Confidence 35888889999999999999998643 78999999986521 110 0000111
Q ss_pred ----Ccc-------ccCCCHHHHHHHHHHHHh-------------------------------------cC-----CceE
Q psy15051 773 ----WKH-------INITSREVMRSQKDVVQS-------------------------------------FP-----LILM 799 (1065)
Q Consensus 773 ----W~~-------ln~~n~~v~~~l~~~lk~-------------------------------------~~-----~~~~ 799 (1065)
|.. ||+.||+|+++|.++++. ++ .+..
T Consensus 150 ~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ 229 (495)
T PRK13840 150 TRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGME 229 (495)
T ss_pred ceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCE
Confidence 221 999999999999999332 00 0456
Q ss_pred EEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhH
Q psy15051 800 IITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRI 874 (1065)
Q Consensus 800 ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl 874 (1065)
+++|.+.. ++.+. ...++++|+|.+...+.. ..+...+...+.. .|.... +|+.|||.-.+
T Consensus 230 ll~Ei~~y--------~~~~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~----~p~~~~--n~L~~HDgIgl 295 (495)
T PRK13840 230 VLVEIHSY--------YKTQIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI----RPRNAV--TVLDTHDGIGI 295 (495)
T ss_pred EEEeCccc--------cCccccccccccEEecchhhHHHHHHHHhCCchHHHHHHHh----CCCccE--EeeecCCCCCc
Confidence 78887653 21110 135889999998886533 2344444444443 466653 59999999877
Q ss_pred ----------hhhcCHH-HHHHHHHHHHhCCCeEEEEcccccCc----------cCCC-------------------Ccc
Q psy15051 875 ----------ATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELGM----------ESPI-------------------LRY 914 (1065)
Q Consensus 875 ----------~s~~~~~-~~kla~~ll~tlpGiP~IyyGdE~G~----------~~~~-------------------~~~ 914 (1065)
...++.+ +..+...+.-...|+++.+.|+.... .... ++.
T Consensus 296 ~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~ 375 (495)
T PRK13840 296 IDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQ 375 (495)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCcce
Confidence 2234433 44444555557789999998876211 1100 000
Q ss_pred -------CCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHH
Q psy15051 915 -------EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDL 987 (1065)
Q Consensus 915 -------~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~L 987 (1065)
-..+|-+.... ...+|+.||..++|+..+ ..-+.++++-+++|
T Consensus 376 iY~~~ll~~~ND~~~~~~-----t~~~R~inR~~~~~~~~~-------------------------~~l~~~v~~~l~~l 425 (495)
T PRK13840 376 VYYVGLLAGPNDMELLAR-----TNVGRDINRHYYSTAEID-------------------------EALERPVVKALNAL 425 (495)
T ss_pred eeechhhccCccHHHHHh-----cCCCcccCCCCCCHHHHH-------------------------HHHHHHHHHHHHHH
Confidence 00011111111 234677788887777532 11234599999999
Q ss_pred HHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 988 TTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 988 i~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
+++|+++||| .|++.....+++.++..|..+.....+.+|+.....++....
T Consensus 426 i~~R~~~~aF-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (495)
T PRK13840 426 IRFRNEHPAF-DGAFSYAADGDTSLTLSWTAGDSSASLTLDFAPKKGLITALD 477 (495)
T ss_pred HHHHhcCccc-CceEEEecCCCCeEEEEEecCCceEEEEEEcccceEEEEecc
Confidence 9999999999 699987777778899999988888899999988877777664
|
|
| >TIGR02100 glgX_debranch glycogen debranching enzyme GlgX | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=267.56 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=84.3
Q ss_pred hhcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTW 100 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (1065)
.|+++||||||||+|++.+++ ..|+|+||+++ |+||| +||||+||++|+.++..... ..-.....+|
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk-~LGvtaI~L~Pi~~~~~~~~------~~~~~~~~yw 224 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLK-KLGVTAVELLPVHAFIDDRH------LLEKGLRNYW 224 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHH-HcCCCEEEECCcccCCcccc------ccccCCCCcc
Confidence 468999999999999875443 46999999996 99999 99999888888777543100 0001112469
Q ss_pred CccceeecccccCCCcccccccccccccc---CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 101 SRRWIVVNHEQISRLPTRTVSSLNIICKY---FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 101 gy~~~v~d~~~v~~~~~~~~~~~~i~~~~---Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|| +..+| ++|+|+| |+++|||+||+ +|++||+|| +|+ |+||++
T Consensus 225 GY--------d~~~y-------~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI--------lDv-------V~NHt~ 271 (688)
T TIGR02100 225 GY--------NTLGF-------FAPEPRYLASGQVAEFKTMVRALHDAGIEVI--------LDV-------VYNHTA 271 (688)
T ss_pred Cc--------Ccccc-------cccChhhcCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcCCcc
Confidence 99 55555 5666688 67999999998 699999999 887 888875
|
This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. |
| >TIGR03852 sucrose_gtfA sucrose phosphorylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=250.30 Aligned_cols=346 Identities=18% Similarity=0.269 Sum_probs=226.7
Q ss_pred EecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCH
Q psy15051 565 ILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTM 644 (1065)
Q Consensus 565 i~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~ 644 (1065)
|.+.+|.|+++++.|||+ |+.++ ||++ ||++|||+|+|++++ ++||+|.||+.|||+|||+
T Consensus 3 v~lity~Ds~g~glgdl~---------------g~l~~--yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~ 63 (470)
T TIGR03852 3 AMLITYADSLGKNLKELN---------------KVLEN--YFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDW 63 (470)
T ss_pred ceEEEecCCCCCChhhHH---------------HHHHH--HHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCH
Confidence 456788888888899999 99988 9999 799999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCc
Q psy15051 645 EDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGM 724 (1065)
Q Consensus 645 edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi 724 (1065)
+||++|++++
T Consensus 64 ~Df~~L~~~~---------------------------------------------------------------------- 73 (470)
T TIGR03852 64 SDVEALSEKY---------------------------------------------------------------------- 73 (470)
T ss_pred HHHHHHHHhh----------------------------------------------------------------------
Confidence 9999999876
Q ss_pred EEEEEeccCCCCCCchhhHhhhcc--CCCCCccee-----ecCCCC--C-----C-CC--CCCCCCc-----------c-
Q psy15051 725 KILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYV-----WKDGLN--G-----K-PG--TPPNNWK-----------H- 775 (1065)
Q Consensus 725 ~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~-----~~~~~d--G-----~-p~--~~~~~W~-----------~- 775 (1065)
+||+|+|+||||.+|+||++++++ +++|+|||+ |.++.. . + |+ .+...|. .
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 788899999999999999999865 789999998 443210 0 0 01 1111221 1
Q ss_pred ------ccCCCHHHHHHHHHHHHh-------------------------------------------cCCceEEEeecCC
Q psy15051 776 ------INITSREVMRSQKDVVQS-------------------------------------------FPLILMIITEAYS 806 (1065)
Q Consensus 776 ------ln~~n~~v~~~l~~~lk~-------------------------------------------~~~~~~ligE~~~ 806 (1065)
||+.||+|++++.++++. ..+++++|+|++.
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~ 233 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHE 233 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhh
Confidence 999999999999888322 1237889999964
Q ss_pred CChHHHhhhccCCCCccccccccHHHHHHhh---cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhh---hcCH
Q psy15051 807 PSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG---ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT---RYSP 880 (1065)
Q Consensus 807 ~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s---~~~~ 880 (1065)
. . .+... .....+++|+|.+...+- ...+...+...+. ..|...+ +|+.|||+--+.. .+..
T Consensus 234 ~----~-~~~~~-~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~----~~p~~~~--nfL~sHDgigl~~~~glL~~ 301 (470)
T TIGR03852 234 H----Y-TIQFK-IAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR----KSPMKQF--TTLDTHDGIGVVDVKDLLTD 301 (470)
T ss_pred h----c-ccccc-cccceeEEccCccchhhHHHhhccCHHHHHHHHH----hCcccce--EEeecCCCCCCccccccCCH
Confidence 2 1 12211 024678889988877553 2345555555544 4555555 4999999965532 3443
Q ss_pred HHH-HHHHHHHHhCCCeEEEEcccccCccCCC-CccC-----CC----------------CCcccc----ccccccccc-
Q psy15051 881 DLV-DAMNMLTLLLPGTAVTFAGDELGMESPI-LRYE-----DQ----------------RDPEGY----IFGKDNYLK- 932 (1065)
Q Consensus 881 ~~~-kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~-----~~----------------~Dp~~~----~~~~~~~~~- 932 (1065)
+.. .+...+.---+++-.+|-+.+.|-.... +... +. +-|.-+ --..+.+..
T Consensus 302 ~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~ 381 (470)
T TIGR03852 302 EEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELL 381 (470)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEEechhhcCCchHHHH
Confidence 333 2333332233444444444433322110 0000 00 000000 000000000
Q ss_pred ----cccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccC-CCeEEEcc
Q psy15051 933 ----VCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM-GDYKISTP 1007 (1065)
Q Consensus 933 ----~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~-G~~~~l~~ 1007 (1065)
.+|+.+|.. -.++.++++.+.. +.+-+.+|+++|+++|||+. |++.....
T Consensus 382 ~rt~~~R~Inr~~---------------------~~~~~i~~~l~~~----v~~~L~~li~~R~~~~aF~~~g~~~~~~~ 436 (470)
T TIGR03852 382 EETKEGRNINRHY---------------------YTLEEIAEEVKRP----VVAKLLNLLRFRNTSKAFDLDGSIDIETP 436 (470)
T ss_pred HhcCCCCCCCCCC---------------------CCHHHHHHHHhhH----HHHHHHHHHHHHhhCcccCCCCceEecCC
Confidence 111111111 1345666666643 66666779999999999986 99986667
Q ss_pred CCcEEEEEEEcC--CcEEEEEEECCCCcEEE
Q psy15051 1008 NNYVFILTRTEG--STSVYLIINLNSRTETV 1036 (1065)
Q Consensus 1008 ~~~viaf~R~~~--~~~vlVv~N~s~~~~~v 1036 (1065)
++.++++.|... ++++.+++|++++++++
T Consensus 437 ~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 437 SENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred CCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 889999999844 78999999999998765
|
In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. |
| >PRK03705 glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=262.26 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=84.5
Q ss_pred hhcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc--cccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT--TAVK 98 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~--~~~~ 98 (1065)
-|+++||||+|+|+|+.++++ ..|+|+|++++ ||||| +||||+||++|..++... +... ....
T Consensus 147 ~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk-~LGvt~I~L~Pv~~~~~~--------~~~~~~g~~~ 217 (658)
T PRK03705 147 PWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLK-QLGITALELLPVAQFASE--------PRLQRMGLSN 217 (658)
T ss_pred CccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHH-HcCCCEEEecCcccCCCc--------cccccccccc
Confidence 478999999999999875543 35999999974 99999 999998888888875431 1111 1125
Q ss_pred ccCccceeecccccCCCccccccccccccccCcH-----HHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYM-----KKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHS 172 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~-----~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~ 172 (1065)
+||| ++.+| ++|+|+|||. ++||+||+ +|++||+|| +|+ |+||+
T Consensus 218 ywGY--------d~~~y-------fa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VI--------lDv-------V~NHt 267 (658)
T PRK03705 218 YWGY--------NPLAM-------FALDPAYASGPETALDEFRDAVKALHKAGIEVI--------LDV-------VFNHS 267 (658)
T ss_pred ccCc--------ccccc-------cccccccCCCCcchHHHHHHHHHHHHHCCCEEE--------EEE-------cccCc
Confidence 7999 55555 6666789984 79999998 699999999 888 88887
Q ss_pred c
Q psy15051 173 M 173 (1065)
Q Consensus 173 ~ 173 (1065)
+
T Consensus 268 ~ 268 (658)
T PRK03705 268 A 268 (658)
T ss_pred c
Confidence 5
|
|
| >PRK14706 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=259.95 Aligned_cols=214 Identities=15% Similarity=0.190 Sum_probs=145.6
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
+..+|||+|+++|+.......|+++|++++| +||| +||||+|+++|..+... ...|||
T Consensus 143 ~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk-~lG~t~velmPv~e~~~---------------~~~wGY----- 201 (639)
T PRK14706 143 QPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVT-YMGYTHVELLGVMEHPF---------------DGSWGY----- 201 (639)
T ss_pred CCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHH-HcCCCEEEccchhcCCC---------------CCCCCc-----
Confidence 4589999999999876444468999999997 9999 99999777777655211 246899
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
++.+| ++++++|||.+|||+||+ +|++||+|| +|+ |+||++
T Consensus 202 ---~~~~~-------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi--------lD~-------v~nH~~------------- 243 (639)
T PRK14706 202 ---QVTGY-------YAPTSRLGTPEDFKYLVNHLHGLGIGVI--------LDW-------VPGHFP------------- 243 (639)
T ss_pred ---Ccccc-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccC-------------
Confidence 55556 667779999999999997 799999999 776 777753
Q ss_pred ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCCC
Q psy15051 187 FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYPP 266 (1065)
Q Consensus 187 ~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1065)
+...++ ..++|.. . +++.+.. .. +
T Consensus 244 ---------------------------~~~~~l-----------~~~dg~~-~--y~~~~~~------------~g-~-- 267 (639)
T PRK14706 244 ---------------------------TDESGL-----------AHFDGGP-L--YEYADPR------------KG-Y-- 267 (639)
T ss_pred ---------------------------cchhhh-----------hccCCCc-c--eeccCCc------------CC-c--
Confidence 111111 0011100 0 0000000 00 0
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHH
Q psy15051 267 PHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILE 346 (1065)
Q Consensus 267 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 346 (1065)
-..+. ...+|+.||+|| ++|+++++
T Consensus 268 -------~~~w~---------------------~~~~~~~~~eVr---------------------------~~l~~~~~ 292 (639)
T PRK14706 268 -------HYDWN---------------------TYIFDYGRNEVV---------------------------MFLIGSAL 292 (639)
T ss_pred -------CCCCC---------------------CcccCCCCHHHH---------------------------HHHHHHHH
Confidence 00011 124789999997 78999999
Q ss_pred HHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCC
Q psy15051 347 FWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQP 424 (1065)
Q Consensus 347 ~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~ 424 (1065)
||++ .||||||+|||++|..-.. ...+..+ ++.. ...+.++++||+++++.+.+. |+..+|+|-
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~-~~~~~~~--------~~~g-----g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~ 358 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDF-SRTEWVP--------NIHG-----GRENLEAIAFLKRLNEVTHHMAPGCMMIAEE 358 (639)
T ss_pred HHHHHhCCCeEEEeeehheeeccc-Ccccccc--------cccC-----CcccHHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 9996 5999999999999865221 1011111 1111 456789999999999988775 999999997
Q ss_pred Cc
Q psy15051 425 SC 426 (1065)
Q Consensus 425 ~~ 426 (1065)
+.
T Consensus 359 ~~ 360 (639)
T PRK14706 359 ST 360 (639)
T ss_pred CC
Confidence 53
|
|
| >PLN02960 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=253.60 Aligned_cols=218 Identities=17% Similarity=0.185 Sum_probs=145.9
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
.+++.++|||+|+++|.. ..+.|+|+|++++ |+||| +||||+|+++|..+... ...|||
T Consensus 391 ~~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk-~LGvt~IeLmPv~e~~~---------------~~swGY-- 450 (897)
T PLN02960 391 KVPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVK-KAGYNAIQLIGVQEHKD---------------YSSVGY-- 450 (897)
T ss_pred CCCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHH-HcCCCEEEECCcccCCC---------------CCCCCC--
Confidence 456788999999999863 3478999999987 99999 99999666666554211 235899
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| ++|+++|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 451 ------~~~~y-------fa~~~~yGtp~dfk~LVd~aH~~GI~VI--------LDv-------V~NH~~---------- 492 (897)
T PLN02960 451 ------KVTNF-------FAVSSRFGTPDDFKRLVDEAHGLGLLVF--------LDI-------VHSYAA---------- 492 (897)
T ss_pred ------CcccC-------CCcccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccC----------
Confidence 66666 667779999999999997 799999999 666 666654
Q ss_pred CccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcccc
Q psy15051 184 GQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1065)
+.+++. ...++|.. ..|+.... ..
T Consensus 493 ------------------------------~d~~~~----------L~~FDG~~---~~Yf~~~~------------~g- 516 (897)
T PLN02960 493 ------------------------------ADEMVG----------LSLFDGSN---DCYFHSGK------------RG- 516 (897)
T ss_pred ------------------------------Cccccc----------hhhcCCCc---cceeecCC------------CC-
Confidence 322211 01111110 01111000 00
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
.|..- ....+||.+|+|| .+|++
T Consensus 517 ----------~~~~W--------------------G~~~fNy~~~eVr---------------------------~fLls 539 (897)
T PLN02960 517 ----------HHKRW--------------------GTRMFKYGDHEVL---------------------------HFLLS 539 (897)
T ss_pred ----------ccCCC--------------------CCcccCCCCHHHH---------------------------HHHHH
Confidence 01000 1246899999997 78999
Q ss_pred HHHHHHH-cCCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccC
Q psy15051 344 ILEFWLK-RGVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSA 420 (1065)
Q Consensus 344 ~l~~Wl~-~GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~ 420 (1065)
+++||++ .||||||+|||..|.. +.++...+ | ++..+... ....++..||+++++.+.+ +|+.++
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~------G----~~~~~~n~--~~d~~Ai~fL~~lN~~v~~~~P~vil 607 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFT------G----DLDEYCNQ--YVDRDALIYLILANEMLHQLHPNIIT 607 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccC------C----cccccCCc--cCCchHHHHHHHHHHHHHhhCCCeEE
Confidence 9999996 5999999999988776 22221111 1 00111111 2457899999999987766 599999
Q ss_pred CCCCCc
Q psy15051 421 DRQPSC 426 (1065)
Q Consensus 421 ~~~~~~ 426 (1065)
|.|-+.
T Consensus 608 IAEdss 613 (897)
T PLN02960 608 IAEDAT 613 (897)
T ss_pred EEECCC
Confidence 999654
|
|
| >PRK14705 glycogen branching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=265.65 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=143.5
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
.+..+|||||+++|++. |++++++++ ||||| +||||.|+++|..+ .+. ..|||
T Consensus 745 ~~p~~IYEvHvgsf~~~-----~~~~~l~~~lldYlk-~LGvt~IeLmPv~e----------------~p~~~swGY--- 799 (1224)
T PRK14705 745 NSPMSVYEVHLGSWRLG-----LGYRELAKELVDYVK-WLGFTHVEFMPVAE----------------HPFGGSWGY--- 799 (1224)
T ss_pred cCCcEEEEEEecccccC-----CchHHHHHHHHHHHH-HhCCCEEEECcccc----------------CCCCCCCCC---
Confidence 35689999999999873 789999999 59999 99999666555544 332 46999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++++++|||++|||+||+ +|++||+|| +|+ |+||++
T Consensus 800 -----~~~~y-------~ap~~ryGt~~dfk~lVd~~H~~GI~VI--------LD~-------V~nH~~----------- 841 (1224)
T PRK14705 800 -----QVTSY-------FAPTSRFGHPDEFRFLVDSLHQAGIGVL--------LDW-------VPAHFP----------- 841 (1224)
T ss_pred -----Ccccc-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccCC-----------
Confidence 66666 677779999999999998 699999999 666 666643
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccC
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
.. .|+ ...++|..- ++..+.. ..
T Consensus 842 -----------------------------~d-~~~----------l~~fdg~~~---y~~~d~~------------~g-- 864 (1224)
T PRK14705 842 -----------------------------KD-SWA----------LAQFDGQPL---YEHADPA------------LG-- 864 (1224)
T ss_pred -----------------------------cc-hhh----------hhhcCCCcc---cccCCcc------------cC--
Confidence 22 121 111111100 0000000 00
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
.| ++| ....+||.+|+|| .+|+++
T Consensus 865 ---------~~-----------------~~W---g~~~fn~~~~eVr---------------------------~fli~~ 888 (1224)
T PRK14705 865 ---------EH-----------------PDW---GTLIFDFGRTEVR---------------------------NFLVAN 888 (1224)
T ss_pred ---------CC-----------------CCC---CCceecCCCHHHH---------------------------HHHHHH
Confidence 00 011 1246899999997 789999
Q ss_pred HHHHHHc-CCCeeeecCcccccc-CCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCC
Q psy15051 345 LEFWLKR-GVDGFGMDSVLKLYE-HESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSAD 421 (1065)
Q Consensus 345 l~~Wl~~-GvDGfRlDav~~l~~-~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~ 421 (1065)
++||+++ ||||||+|+|++|.. +.+ .++ |.+.+|.++ ...+.++.+||+++++.+.+ +|+..+|
T Consensus 889 a~~Wl~eyhiDGfR~Dav~~mly~Dys--r~~------g~w~pn~~g-----g~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 889 ALYWLDEFHIDGLRVDAVASMLYLDYS--REE------GQWRPNRFG-----GRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred HHHHHHHhCCCcEEEeehhhhhhcccc--ccc------ccccccccC-----CccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999976 999999999998864 221 111 222222222 34568999999999988776 4999999
Q ss_pred CCCCc
Q psy15051 422 RQPSC 426 (1065)
Q Consensus 422 ~~~~~ 426 (1065)
+|.+-
T Consensus 956 AEest 960 (1224)
T PRK14705 956 AEEST 960 (1224)
T ss_pred EEcCC
Confidence 99644
|
|
| >TIGR02104 pulA_typeI pullulanase, type I | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-23 Score=251.86 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=83.4
Q ss_pred hcccceEEEecccccCcCCCC---cccccchhhh-----------hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccc
Q psy15051 28 WKNTVIYQILVPSFKDSNNDG---IGDLRGKNVR-----------KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL 93 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g---~Gdl~gi~~k-----------L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~ 93 (1065)
++++||||+|+|+|+..++++ .|+|+|++++ |+||| +||||+||++|+.++.... ...
T Consensus 125 ~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~-~LGvt~I~L~Pi~~~~~~~-------~~~ 196 (605)
T TIGR02104 125 PEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLK-ELGVTHVQLLPVFDFAGVD-------EED 196 (605)
T ss_pred hhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHH-HcCCCEEEeCCcccccccc-------ccc
Confidence 456899999999999776655 5888888876 99999 9999988888877644310 000
Q ss_pred cccccccCccceeecccccCCCccccccccccccccCc--HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCC
Q psy15051 94 TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPS 170 (1065)
Q Consensus 94 ~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~n 170 (1065)
......|||. ..||+.+++- +..+|.+|+ ++|||+||+ ||++||+|| +|+ |+|
T Consensus 197 ~~~~~~wGY~--~~~y~~~~~~-------y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi--------lDv-------V~N 252 (605)
T TIGR02104 197 PNNAYNWGYD--PLNYNVPEGS-------YSTNPYDPATRIRELKQMIQALHENGIRVI--------MDV-------VYN 252 (605)
T ss_pred CCCCCCCCCC--CccCCCcChh-------hhcCCCccchHHHHHHHHHHHHHHCCCEEE--------EEE-------EcC
Confidence 0111248884 6666666653 555666554 699999998 699999999 887 888
Q ss_pred Ccc
Q psy15051 171 HSM 173 (1065)
Q Consensus 171 H~~ 173 (1065)
|++
T Consensus 253 H~~ 255 (605)
T TIGR02104 253 HTY 255 (605)
T ss_pred Ccc
Confidence 874
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases. |
| >PLN00196 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-22 Score=231.54 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=72.1
Q ss_pred cccceEEEec-ccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILV-PSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~-~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
.+.|++|-|- .++.. ..|+++||++||+||+ +||||+||++| ++++ ..+|||
T Consensus 23 ~~~v~~Q~F~W~~~~~----~gg~~~~i~~kldyL~-~LGvtaIWL~P----------------~~~s-~s~hGY----- 75 (428)
T PLN00196 23 AGQVLFQGFNWESWKQ----NGGWYNFLMGKVDDIA-AAGITHVWLPP----------------PSHS-VSEQGY----- 75 (428)
T ss_pred CCCEEEEeeccCCCCC----CCcCHHHHHHHHHHHH-HcCCCEEEeCC----------------CCCC-CCCCCC-----
Confidence 4478888776 44432 2479999999999999 99999555444 4443 246898
Q ss_pred cccccCCCccccccccccc-cccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 108 NHEQISRLPTRTVSSLNII-CKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~-~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++|| ++|||.+||++||+ ||++||+|| +|+ |+||++
T Consensus 76 ---~~~D~-------y~ld~~~fGt~~elk~Lv~~aH~~GIkVi--------lDv-------V~NH~~ 118 (428)
T PLN00196 76 ---MPGRL-------YDLDASKYGNEAQLKSLIEAFHGKGVQVI--------ADI-------VINHRT 118 (428)
T ss_pred ---Ccccc-------CCCCcccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CccCcc
Confidence 55555 5666 48999999999997 699999999 998 999986
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=207.45 Aligned_cols=76 Identities=54% Similarity=0.969 Sum_probs=73.9
Q ss_pred EEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---CCCCCcCCCCcccCCC
Q psy15051 564 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN---GDIGYDISNHTEVGKD 640 (1065)
Q Consensus 564 ei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~---~~~GY~~~dy~~idp~ 640 (1065)
||++++|.++++++.|||+ ||+++|+|||+||||+|||+||++++. .+|||++.||++++|+
T Consensus 1 qi~~~~F~~~~~~~~G~~~---------------gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~ 65 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQ---------------GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPR 65 (166)
T ss_pred CeeeccccCCCCCCCcCHH---------------HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcc
Confidence 6899999999999999999 999999999999999999999999986 6799999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy15051 641 FGTMEDFDELVKLV 654 (1065)
Q Consensus 641 ~Gt~edfk~LV~~a 654 (1065)
|||++||++||++|
T Consensus 66 ~Gt~~d~~~lv~~~ 79 (166)
T smart00642 66 FGTMEDFKELVDAA 79 (166)
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999999
|
|
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-22 Score=235.12 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=75.7
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
|+..||||+|+.+|+. + ..-|++++.+++|+||| +||||+|-++|+.+.- .. ..|||
T Consensus 142 ~e~~vIYElHvGs~~~-~-~~~~~~e~a~~llpYl~-elG~T~IELMPv~e~p-----------~~----~sWGY----- 198 (628)
T COG0296 142 WEPIVIYELHVGSFTP-D-RFLGYFELAIELLPYLK-ELGITHIELMPVAEHP-----------GD----RSWGY----- 198 (628)
T ss_pred CCCceEEEEEeeeccC-C-CCcCHHHHHHHHhHHHH-HhCCCEEEEcccccCC-----------CC----CCCCC-----
Confidence 7799999999999998 4 66799999999999999 9999977777765532 22 46999
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
+..-| +++..+|||.+|||+||+ ||++||.||
T Consensus 199 ---q~~g~-------yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 199 ---QGTGY-------YAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred ---Cccee-------ccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 66665 677779999999999997 799999999
|
|
| >PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=256.60 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=81.1
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhh------hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccC
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK------RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWS 101 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL------~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~g 101 (1065)
|++++|||+++++|+..+....|+++|+.++| +||| +||||+||++|+.++....- + + -.....+||
T Consensus 156 ~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk-~LGvt~I~L~Pi~~~~~~~~---~--~-~~g~~~yWG 228 (1221)
T PRK14510 156 WDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLK-KLGVSIVELNPIFASVDEHH---L--P-QLGLSNYWG 228 (1221)
T ss_pred cccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHH-HcCCCEEEeCCccccCcccc---c--c-cccCcCcCC
Confidence 68899999999999865443345555555555 5999 99999888888877543100 0 0 011235799
Q ss_pred ccceeecccccCCCccccccccccccccC--cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 102 RRWIVVNHEQISRLPTRTVSSLNIICKYF--YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 102 y~~~v~d~~~v~~~~~~~~~~~~i~~~~G--t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
| ++.+| ++|||+|| +.+|||+||+ +|++||+|| +|+ |+|||+
T Consensus 229 Y--------~~~~y-------fa~dp~yg~~~~~efk~lV~~~H~~GI~VI--------LDv-------V~NHt~ 273 (1221)
T PRK14510 229 Y--------NTVAF-------LAPDPRLAPGGEEEFAQAIKEAQSAGIAVI--------LDV-------VFNHTG 273 (1221)
T ss_pred C--------CCCCC-------CCcChhhccCcHHHHHHHHHHHHHCCCEEE--------EEE-------cccccc
Confidence 9 66666 67777999 9999999998 699999999 887 888875
|
|
| >TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=247.55 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=82.5
Q ss_pred hcccceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeee-cccCccccc-cc-c
Q psy15051 28 WKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISF-WMNCPILTT-AV-K 98 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~-~~~~p~~~~-~~-~ 98 (1065)
++++||||+|+|+|+.... ...|+|+||+++|+||| +||||.||++|.++...+.-.- -...+.+.+ .. -
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLk-eLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQ-DLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY 527 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHH-HcCCCEEEEcCcccccccccccccccccccccccccc
Confidence 5689999999999984221 13699999999999999 9999999999987632210000 000000111 11 2
Q ss_pred ccCccceeecccccCCCccccccccccccccC--cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYF--YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~G--t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.|||. +.||+.+++. +..+|..| ++++||+||+ +|++||+|| ||| |+||++
T Consensus 528 nWGYd--p~~yfape~~-------Ygtdp~dp~~ri~EfK~LV~alH~~GI~VI--------LDV-------VyNHt~ 581 (1111)
T TIGR02102 528 NWGYD--PQNYFALSGM-------YSEDPKDPELRIAEFKNLINEIHKRGMGVI--------LDV-------VYNHTA 581 (1111)
T ss_pred ccCCC--cCcCcccccc-------cccCCcCccccHHHHHHHHHHHHHCCCEEE--------Eec-------cccccc
Confidence 48884 7777777654 44444332 3799999998 699999999 887 888864
|
Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645). |
| >PLN02447 1,4-alpha-glucan-branching enzyme | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=236.37 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=77.0
Q ss_pred cccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
+..+|||++++.|+. ....|++++++++ |+||| +||||+|+++|..+... ...|||
T Consensus 228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk-~LG~t~I~LmPi~e~~~---------------~~~wGY----- 284 (758)
T PLN02447 228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIK-ALGYNAVQLMAIQEHAY---------------YGSFGY----- 284 (758)
T ss_pred CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHH-HcCCCEEEECCccccCC---------------CCCCCc-----
Confidence 467999999999853 3357999998765 99999 99999666666555221 246899
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| ++++++|||.+|||+||+ ||++||+|| +|+ |+||++
T Consensus 285 ---~~~~~-------fa~~~~~Gtp~dlk~LVd~aH~~GI~Vi--------lDv-------V~nH~~ 326 (758)
T PLN02447 285 ---HVTNF-------FAVSSRSGTPEDLKYLIDKAHSLGLRVL--------MDV-------VHSHAS 326 (758)
T ss_pred ---CcccC-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccc
Confidence 56666 666778999999999997 799999999 887 888865
|
|
| >PLN02361 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=216.75 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=69.4
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecc
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNH 109 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~ 109 (1065)
..|++|-|--.-.+. .-+++|++||+||+ +||||+||++|+.+ + ..+|||
T Consensus 11 ~~v~lQ~F~W~~~~~-----~~w~~i~~kl~~l~-~lG~t~iwl~P~~~----------------~-~~~~GY------- 60 (401)
T PLN02361 11 REILLQAFNWESHKH-----DWWRNLEGKVPDLA-KSGFTSAWLPPPSQ----------------S-LAPEGY------- 60 (401)
T ss_pred CcEEEEEEeccCCcc-----HHHHHHHHHHHHHH-HcCCCEEEeCCCCc----------------C-CCCCCC-------
Confidence 467777764221111 36799999999999 99999555555444 3 235898
Q ss_pred cccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 110 EQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 110 ~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| +++|++|||.+||++||+ +|++||+|| +|+ |+||++
T Consensus 61 -~~~d~-------y~~~~~~Gt~~el~~li~~~h~~gi~vi--------~D~-------V~NH~~ 102 (401)
T PLN02361 61 -LPQNL-------YSLNSAYGSEHLLKSLLRKMKQYNVRAM--------ADI-------VINHRV 102 (401)
T ss_pred -Ccccc-------cccCcccCCHHHHHHHHHHHHHcCCEEE--------EEE-------cccccc
Confidence 66666 677779999999999998 699999999 998 999975
|
|
| >PLN02784 alpha-amylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-20 Score=222.53 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=77.6
Q ss_pred ccceEEEeccccc-CcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 30 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~-d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
....|+|+...|. ++..+|.. ++||+++|+||+ +||||.||++|..+ +. .++||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w-~~~I~ekldyL~-~LG~taIWLpP~~~----------------s~-s~~GY------ 552 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRW-YMELGEKAAELS-SLGFTVVWLPPPTE----------------SV-SPEGY------ 552 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCch-HHHHHHHHHHHH-HhCCCEEEeCCCCC----------------CC-CCCCc------
Confidence 5678999999998 87777655 899999999999 99999555555433 32 45798
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| +.++++|||.+||++||+ +|++||+|| +|| |+||++
T Consensus 553 --~p~D~-------y~lds~yGT~~ELk~LI~a~H~~GIkVI--------lDi-------ViNH~a 594 (894)
T PLN02784 553 --MPKDL-------YNLNSRYGTIDELKDLVKSFHEVGIKVL--------GDA-------VLNHRC 594 (894)
T ss_pred --Ccccc-------cccCcCcCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc
Confidence 56665 666678999999999998 699999999 998 999975
|
|
| >TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-20 Score=226.98 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=82.3
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh-------hhhhHhhhCCCCcCCCCCCCCCcceee--eccc-----
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR-------KRYLELTLGLDPCGSSMNTDSNTIYIS--FWMN----- 89 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k-------L~yl~~~LGv~~~~~~p~~~~~~~~~~--~~~~----- 89 (1065)
+++++|||+|+|.|+..+.. ..|+|.|++++ |.||+ +||||.|.+.|.+|..++--. -+..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~-eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLA-DAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHH-hCCCcEEEEcChhhcCccccccccccccccch
Confidence 56789999999999854433 45999999987 66666 779999999999886543100 0000
Q ss_pred ------Ccccc---------------------------------c-cccccCccceeecccccCCCcccccccccccccc
Q psy15051 90 ------CPILT---------------------------------T-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 90 ------~p~~~---------------------------------~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
.|... . ..-+|||+ ..+|+....- |..+|.
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYD--P~~y~aPegS-------Yatdp~- 398 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYD--PFHYTVPEGS-------YATDPE- 398 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC--CcccCCcChh-------hccCCC-
Confidence 00000 0 01258884 6666666642 566664
Q ss_pred Cc--HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FY--MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt--~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|. .++||+||+ +|++||+|| ||+ |+||++
T Consensus 399 g~~Ri~Efk~mV~alH~~Gi~VI--------lDV-------VyNHt~ 430 (898)
T TIGR02103 399 GPARIKEFREMVQALNKTGLNVV--------MDV-------VYNHTN 430 (898)
T ss_pred CchHHHHHHHHHHHHHHCCCEEE--------EEe-------eccccc
Confidence 43 689999998 699999999 887 888864
|
Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). |
| >COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-19 Score=214.82 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=88.9
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc--ccccc
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT--TAVKT 99 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~--~~~~~ 99 (1065)
|.++||||+|+|.|+..+++ -.|++.|++++ |+||| +||||+|.+.|..+.... +... .-..+
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk-~LGvtaVeLLPV~~~~~~--------~~l~~~gl~n~ 239 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLK-DLGVTAVELLPVFDFYDE--------PHLDKSGLNNN 239 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHH-HhCCceEEEecceEEecc--------ccccccccccc
Confidence 89999999999999865443 34999999999 99999 999999999998774331 3332 23357
Q ss_pred cCccceeecccccCCCccccccccccccc-cCcHHHHHHHHHH-HhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 100 WSRRWIVVNHEQISRLPTRTVSSLNIICK-YFYMKKFKHRIDA-KNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 100 ~gy~~~v~d~~~v~~~~~~~~~~~~i~~~-~Gt~~df~~Li~a-h~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|||. ..+|....+- |.-+|. -+...+||+||++ |++||.|| +|| |+|||.
T Consensus 240 WGYd--P~~fFAp~~~-------Yss~p~p~~~i~EfK~mV~~lHkaGI~VI--------LDV-------VfNHTa 291 (697)
T COG1523 240 WGYD--PLNFFAPEGR-------YASNPEPATRIKEFKDMVKALHKAGIEVI--------LDV-------VFNHTA 291 (697)
T ss_pred cCCC--cccccCCCcc-------ccCCCCcchHHHHHHHHHHHHHHcCCEEE--------EEE-------eccCcc
Confidence 9995 7777777753 555554 3446799999985 99999999 998 999985
|
|
| >PLN02877 alpha-amylase/limit dextrinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-19 Score=218.69 Aligned_cols=121 Identities=13% Similarity=0.142 Sum_probs=79.2
Q ss_pred hcccceEEEecccccCcCCC----Ccccccchhhh-------hhhhHhhhCCCCcCCCCCCCCCcceee--ec--ccCcc
Q psy15051 28 WKNTVIYQILVPSFKDSNND----GIGDLRGKNVR-------KRYLELTLGLDPCGSSMNTDSNTIYIS--FW--MNCPI 92 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k-------L~yl~~~LGv~~~~~~p~~~~~~~~~~--~~--~~~p~ 92 (1065)
+.++||||+|+|.|+..+.. ..|+|.|++++ |+||+ +||||.|.+.|.++..++.-. -+ ..++.
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~Lk-elGVThVeLLPvfDf~tvdE~~~~~~~~~~~~ 415 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLA-DAGLTHVHLLPTFQFGSVDDEKENWKCVDPKE 415 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHH-HcCCCEEEeCCccccCCcccccccccccccch
Confidence 45789999999999865432 35999999987 55666 669999999999886543100 00 00000
Q ss_pred c------------------cccccccCccceeecccccCCCccccccccccccc-cCcHHHHHHHHH-HHhCCCEEEecc
Q psy15051 93 L------------------TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK-YFYMKKFKHRID-AKNDSLHLIDSV 152 (1065)
Q Consensus 93 ~------------------~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~-~Gt~~df~~Li~-ah~~gi~vi~~~ 152 (1065)
+ ....-+|||+ ..+|+....- |.-||. -....+||+||+ +|++||+||
T Consensus 416 l~~~~~~s~~~q~~v~~~~~~d~yNWGYD--P~~YfaPEgS-------YatdP~g~~RI~efk~mV~~lH~~GI~VI--- 483 (970)
T PLN02877 416 LEKLPPDSEEQQAAITAIQDDDGYNWGYN--PVLWGVPKGS-------YASNPDGPCRIIEFRKMVQALNRIGLRVV--- 483 (970)
T ss_pred hccccccchhhhhcccccccCCCCCCCCC--ccccCCCCcc-------cccCCCCcchHHHHHHHHHHHHHCCCEEE---
Confidence 0 0122568884 6666666632 333331 023678999998 699999999
Q ss_pred CCCcccccccccccCCCCCcc
Q psy15051 153 LGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 153 ~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
||+ |+||++
T Consensus 484 -----mDV-------VyNHt~ 492 (970)
T PLN02877 484 -----LDV-------VYNHLH 492 (970)
T ss_pred -----EEE-------CCcccc
Confidence 776 777764
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-18 Score=175.35 Aligned_cols=92 Identities=32% Similarity=0.449 Sum_probs=79.1
Q ss_pred EEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc---cccCccceeecccc
Q psy15051 35 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV---KTWSRRWIVVNHEQ 111 (1065)
Q Consensus 35 qi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~---~~~gy~~~v~d~~~ 111 (1065)
||+|+||.++++++.|||+||+++|+||+ +|||+.||++ |+++++. .++|| +
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~-~lG~~~I~l~----------------Pi~~~~~~~~~~~gY--------~ 55 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLK-DLGVTAIWLS----------------PIFESPQGYPSYHGY--------D 55 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHH-HCCCCEEEEC----------------cceeCCCCCCCCCCc--------C
Confidence 79999999999999999999999999999 9999944444 5555554 67888 5
Q ss_pred cCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 112 ISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 112 v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 56 ~~d~-------~~i~~~~Gt~~d~~~lv~~~h~~Gi~vi--------lD~-------V~NH~~ 96 (166)
T smart00642 56 ISDY-------KQIDPRFGTMEDFKELVDAAHARGIKVI--------LDV-------VINHTS 96 (166)
T ss_pred cccc-------CCCCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCCCC
Confidence 5555 566668999999999997 799999999 998 999987
|
|
| >TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=195.24 Aligned_cols=90 Identities=24% Similarity=0.187 Sum_probs=70.6
Q ss_pred cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccc
Q psy15051 49 IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIIC 127 (1065)
Q Consensus 49 ~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~ 127 (1065)
.|+|++++++|+||+ +|||+.||++ |++.+ +..+||| ++.+| +.|||
T Consensus 12 ~~tf~~~~~~L~YL~-~LGv~~V~ls----------------Pi~~a~~gs~hGY--------dv~D~-------~~idp 59 (825)
T TIGR02401 12 GFTFDDAAALLPYLK-SLGVSHLYLS----------------PILTAVPGSTHGY--------DVVDH-------SEINP 59 (825)
T ss_pred CCCHHHHHHhhHHHH-HcCCCEEEeC----------------cCccCCCCCCCCC--------CCCCC-------CCcCC
Confidence 389999999999999 9999944444 55543 3457999 56665 66667
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCC
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
+||++++|++|++ +|++||+|| +|| |+||++.. ..+|+||++.
T Consensus 60 ~lGt~edf~~Lv~aah~~Gm~vI--------lDi-------VpNH~a~~-------~~~n~wf~dv 103 (825)
T TIGR02401 60 ELGGEEGLRRLSEAARARGLGLI--------VDI-------VPNHMAVH-------LEQNPWWWDV 103 (825)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccccc-------cccChHHHHH
Confidence 9999999999998 699999999 998 99998611 1246888753
|
This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. |
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=206.73 Aligned_cols=96 Identities=23% Similarity=0.577 Sum_probs=88.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcC-CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~-~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
+++++|+|||+|||++|||+||+++ +..+|||++.||+.|||+|||.++|++||++|
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a---------------------- 816 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL---------------------- 816 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH----------------------
Confidence 9999999999999999999999996 45679999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC---CCchhhHhhhcc--CCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS---NKHDWFIKSAQK--IDP 751 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts---~~~~wf~~~~~~--~~~ 751 (1065)
|++||+||+|+|+||++ .+|+||.+.... .++
T Consensus 817 -------------------------------------------h~~Gi~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~ 853 (1693)
T PRK14507 817 -------------------------------------------KAHGLGQLLDIVPNHMGVGGADNPWWLDVLENGPASP 853 (1693)
T ss_pred -------------------------------------------HHCCCEEEEEecccccCCCccCCHHHHHHHHhCCCCC
Confidence 99999999999999998 579999998753 789
Q ss_pred CCcceee
Q psy15051 752 YTNYYVW 758 (1065)
Q Consensus 752 ~~d~y~~ 758 (1065)
|.+||.+
T Consensus 854 y~~~Fdi 860 (1693)
T PRK14507 854 AADAFDI 860 (1693)
T ss_pred ccCeeee
Confidence 9999953
|
|
| >KOG0470|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=184.60 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=80.1
Q ss_pred ccceEEEecccccCcCCCC--cccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcccee
Q psy15051 30 NTVIYQILVPSFKDSNNDG--IGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIV 106 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g--~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v 106 (1065)
+.+|||.+||.|+...+.. .|-++|+++| |+||| .||+|+|.++|..+.+.. ...|||. |
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK-~LG~NaiqLmpi~Ef~~~--------------~~s~GY~--~ 291 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLK-KLGYNAIQLMPIFEFGHY--------------YASWGYQ--V 291 (757)
T ss_pred heEEEEEeeccccCCCCccccccchhhhhhhhhhHHH-HhCccceEEeehhhhhhh--------------hhccCcc--e
Confidence 7899999999998665443 2229999999 99999 999998777777665421 1358985 6
Q ss_pred ecccccCCCccccccccccccccCcHH------HHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMK------KFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~------df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++|..... +|||.+ |||.||+ ||..||-|+ +|| |.||++
T Consensus 292 ~nFFapss-------------rYgt~~s~~ri~efK~lVd~aHs~GI~Vl--------LDV-------V~sHaa 337 (757)
T KOG0470|consen 292 TNFFAPSS-------------RYGTPESPCRINEFKELVDKAHSLGIEVL--------LDV-------VHSHAA 337 (757)
T ss_pred eEeecccc-------------cccCCCcccchHHHHHHHHHHhhCCcEEe--------hhh-------hhhhcc
Confidence 66666665 789999 9999997 799999999 898 999986
|
|
| >PLN03244 alpha-amylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-14 Score=169.07 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=63.0
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCcccccc-CCCCCCCCCCCc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYE-HESFANEPRLPE 378 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~-~~~~~d~p~~~~ 378 (1065)
..+|+.+|+|+ ..|+++++||++ .||||||+|+|..|.. +.+. .+..
T Consensus 499 ~~fnyg~~EVr---------------------------~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~--~~f~-- 547 (872)
T PLN03244 499 RMFKYGDLDVL---------------------------HFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF--ASFN-- 547 (872)
T ss_pred ceecCCCHHHH---------------------------HHHHHHHHHHHHHhCcCcceeecchhheeecccc--cccc--
Confidence 35799999997 789999999995 5999999999988876 3221 0100
Q ss_pred CCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCc
Q psy15051 379 AAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSC 426 (1065)
Q Consensus 379 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~ 426 (1065)
.++..+.+.+ ...++..||+.+++++.+. |+.++|.|-+.
T Consensus 548 ------g~~~~y~n~~--~d~dAv~fL~laN~~ih~~~P~~itIAEDsS 588 (872)
T PLN03244 548 ------GDLDDYCNQY--VDKDALMYLILANEILHALHPKIITIAEDAT 588 (872)
T ss_pred ------CCcccccccc--CCchHHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 0122222222 3578999999999987765 99999999643
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-13 Score=160.63 Aligned_cols=95 Identities=28% Similarity=0.678 Sum_probs=83.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
.....||||++|||+|+|++|||... ...|||+|+|+..|+|.+|+.+.|.+||+++
T Consensus 20 ~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaal---------------------- 77 (889)
T COG3280 20 DARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAAL---------------------- 77 (889)
T ss_pred HHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHH----------------------
Confidence 66778999999999999999999984 3359999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC---CCchhhHhhhcc--CCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS---NKHDWFIKSAQK--IDP 751 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts---~~~~wf~~~~~~--~~~ 751 (1065)
|++||.+|+|+||||++ ..++|+.+.+.. ++.
T Consensus 78 -------------------------------------------k~~GlGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ 114 (889)
T COG3280 78 -------------------------------------------KSRGLGLIVDIVPNHMAVGGHENPWWWDVLENGRDSA 114 (889)
T ss_pred -------------------------------------------HhcCCceEEEecccchhcccccChHHHHHHHhCcCcc
Confidence 88888888999999986 447888887753 777
Q ss_pred CCccee
Q psy15051 752 YTNYYV 757 (1065)
Q Consensus 752 ~~d~y~ 757 (1065)
|.+||-
T Consensus 115 ya~yFD 120 (889)
T COG3280 115 YANYFD 120 (889)
T ss_pred chhhcc
Confidence 888873
|
|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-12 Score=163.48 Aligned_cols=82 Identities=21% Similarity=0.419 Sum_probs=76.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCC----CCHHHHHHHHHHHHhcCCceeecccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDF----GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQ 673 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~----Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~ 673 (1065)
...++|+|||+||+|.||||||++-....+.|++.||+.|||.| |+.+||++||+++
T Consensus 133 ~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~------------------- 193 (1464)
T TIGR01531 133 EWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKL------------------- 193 (1464)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHH-------------------
Confidence 88999999999999999999999776555999999999999999 4899999999999
Q ss_pred cccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhc-CcEEEEEeccCCCCCCchhhHh
Q psy15051 674 LYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRA-GMKILVEFVPNHSSNKHDWFIK 744 (1065)
Q Consensus 674 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-Gi~vIlDvV~NHts~~~~wf~~ 744 (1065)
|++ ||++|+|+|+|||+.+|+|+.+
T Consensus 194 ----------------------------------------------h~~~Gm~~ilDvV~NHTa~ds~Wl~e 219 (1464)
T TIGR01531 194 ----------------------------------------------HRDWNVLSITDIVFNHTANNSPWLLE 219 (1464)
T ss_pred ----------------------------------------------HHhcCCEEEEEeeecccccCCHHHHh
Confidence 775 9999999999999999999986
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >PRK14511 maltooligosyl trehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-11 Score=150.31 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK 128 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~ 128 (1065)
++|++++++|+||+ +|||+.||++ |++++ +..+||| ++.+| ..|||+
T Consensus 17 ~tf~~~~~~l~YL~-~LGis~IyLs----------------Pi~~a~~gs~hGY--------dv~D~-------~~idp~ 64 (879)
T PRK14511 17 FTFDDAAELVPYFA-DLGVSHLYLS----------------PILAARPGSTHGY--------DVVDH-------TRINPE 64 (879)
T ss_pred CCHHHHHHHhHHHH-HcCCCEEEEC----------------cCccCCCCCCCCC--------CcCCC-------CCcCCC
Confidence 79999999999999 9999944444 55544 3457999 55555 666668
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccC
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQG 191 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~ 191 (1065)
||+.++|++||+ +|++||+|| +|| |+||++. .+ .+|+||++
T Consensus 65 lGt~e~f~~Lv~aah~~Gi~VI--------lDi-------V~NH~~~----~~---~~n~ww~d 106 (879)
T PRK14511 65 LGGEEGLRRLAAALRAHGMGLI--------LDI-------VPNHMAV----GG---PDNPWWWD 106 (879)
T ss_pred CCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccccccC----cC---ccCHHHHH
Confidence 999999999998 699999999 998 9999861 11 26788865
|
|
| >KOG2212|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=117.30 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHcCcCEEEeCCCCcCCCC-----CC--CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 604 DYLKELGVETLWLTPFYSGPNG-----DI--GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 604 dYLk~LGvnaI~L~PI~~~~~~-----~~--GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
..|.--|+.+|+.+|+.|+... .| .|.|..| .++.+=|.+|||+.||++|.+-|.|+++|+|++||.
T Consensus 48 ~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~ 121 (504)
T KOG2212|consen 48 RFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMC 121 (504)
T ss_pred hhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhc
Confidence 3777799999999999998422 22 5999998 689999999999999999988888888888876654
|
|
| >PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-11 Score=154.20 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=72.6
Q ss_pred cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccc
Q psy15051 49 IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIIC 127 (1065)
Q Consensus 49 ~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~ 127 (1065)
.++|++++++|+||+ +|||+ .+|++ |++++ +..+||| +|.+| +.|||
T Consensus 754 ~~tf~~~~~~l~Yl~-~LGv~---------------~i~ls-Pi~~a~~gs~hGY--------dv~D~-------~~idp 801 (1693)
T PRK14507 754 DFTFADAEAILPYLA-ALGIS---------------HVYAS-PILKARPGSTHGY--------DIVDH-------SQINP 801 (1693)
T ss_pred CCCHHHHHHHhHHHH-HcCCC---------------EEEEC-CCcCCCCCCCCCC--------CCCCC-------CccCc
Confidence 389999999999999 99999 44444 66653 4568999 56665 66667
Q ss_pred ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCC
Q psy15051 128 KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 128 ~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
+||+++||++|++ +|++||+|| +|| |+||++.. ..+|+||++.
T Consensus 802 ~lG~~edf~~Lv~~ah~~Gi~vi--------lDi-------V~NH~~~~-------~~~n~w~~dv 845 (1693)
T PRK14507 802 EIGGEEGFERFCAALKAHGLGQL--------LDI-------VPNHMGVG-------GADNPWWLDV 845 (1693)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccCCC-------ccCCHHHHHH
Confidence 9999999999998 699999999 998 99998611 2578899764
|
|
| >KOG2212|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=99.29 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccccccCchhhhc-ccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc
Q psy15051 17 LSSVRCNQKEWWK-NTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT 94 (1065)
Q Consensus 17 ~~~~~~~~~~w~~-~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~ 94 (1065)
...-....+.||+ ...|-.+|---+ ..|..+. .+|. --|+..+..||..++-.. . |.+
T Consensus 14 ~~~~aq~~t~~~~~R~tmVHLFEWKW-----------~DiA~ECE~FL~-p~G~~gVQVSP~nEn~~~--~-----~~~- 73 (504)
T KOG2212|consen 14 YNFWAQYSTNTQQGRTTIVHLFEWKW-----------VDIALECERFLA-PKGFGGVQVSPPNENVAI--H-----NPF- 73 (504)
T ss_pred HHHHhhcCchhhcCcceEEEEEEeeh-----------HHHHHHHHhhcC-cCCcceeeecCcchhhhh--c-----CCC-
Confidence 3333344567887 455656655444 3566665 4776 888888999998886431 0 111
Q ss_pred ccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 95 TAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 95 ~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|.| -..| .-.|++++.+-|..|+|+.+|+ +.+-|.|++ +|| |+||-+
T Consensus 74 -------rPW-------WeRY---QPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiy--------VDv-------v~NHM~ 121 (504)
T KOG2212|consen 74 -------RPW-------WERY---QPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIY--------VDA-------VINHMC 121 (504)
T ss_pred -------CCc-------eeec---ccceEEeeccCCCHHHHHHHHHHhhccceEEE--------ehh-------hhhhhc
Confidence 111 1111 1123788889999999999997 799999999 898 999954
|
|
| >TIGR01531 glyc_debranch glycogen debranching enzymye | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-08 Score=123.26 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|.|....++|+||+ +||++ ++|++ |++..+...+.| +|.|| .+|||.|
T Consensus 129 G~~~~w~~~L~~ik-~lGyN---------------~Ihft-PI~~~G~SnS~Y--------si~Dy-------l~idP~~ 176 (1464)
T TIGR01531 129 GPLSEWEPRLRVAK-EKGYN---------------MIHFT-PLQELGGSNSCY--------SLYDQ-------LQLNQHF 176 (1464)
T ss_pred CCHHHHHHHHHHHH-HcCCC---------------EEEeC-CCccCCCCCCCc--------cccch-------hhcChhh
Confidence 99999999999999 99999 55555 666444456777 55555 5555678
Q ss_pred ----CcHHHHHHHHH-HHhC-CCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCc
Q psy15051 130 ----FYMKKFKHRID-AKND-SLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPV 194 (1065)
Q Consensus 130 ----Gt~~df~~Li~-ah~~-gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~ 194 (1065)
|+.+||++||+ +|++ ||++| +|+ |+|||+ ..|+||++-|.
T Consensus 177 ~~~~~~~~d~~~lV~~~h~~~Gm~~i--------lDv-------V~NHTa----------~ds~Wl~eHPE 222 (1464)
T TIGR01531 177 KSQKDGKNDVQALVEKLHRDWNVLSI--------TDI-------VFNHTA----------NNSPWLLEHPE 222 (1464)
T ss_pred cccCCcHHHHHHHHHHHHHhcCCEEE--------EEe-------eecccc----------cCCHHHHhChH
Confidence 59999999997 6886 99999 998 999976 78888887554
|
glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground. |
| >PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-07 Score=82.78 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccccCCCeEEEc----cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCc
Q psy15051 983 VYKDLTTLRATSGAVRMGDYKIST----PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSG 1058 (1065)
Q Consensus 983 ~~r~Li~LRk~~paL~~G~~~~l~----~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~ 1058 (1065)
+||+||+|||++|+|+.|++..+. .++.++++.|..+++.++|++|+|+++++++ .....+++.++....
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~~~~~~------~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDEPVTVP------EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-EEEE------TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCCcEEcc------CCCCCeEEEcCCCcc
Confidence 699999999999999999887665 2456888888889999999999999999998 235567777765543
|
It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A .... |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=104.52 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=76.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCC------HHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGT------MEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt------~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
...++|..++++|+|.|+++|+.+-+.....|.+.|...+||.+.. .++++++|.+++
T Consensus 23 ~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~---------------- 86 (423)
T PF14701_consen 23 DWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAE---------------- 86 (423)
T ss_pred HHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHH----------------
Confidence 7799999999999999999999999876688999999999999843 479999999992
Q ss_pred cccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHh
Q psy15051 672 HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIK 744 (1065)
Q Consensus 672 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~ 744 (1065)
++.||..|.|+|.|||+.+++|..+
T Consensus 87 ------------------------------------------------~~~~ll~~~DvV~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 87 ------------------------------------------------KKYGLLSMTDVVLNHTANNSPWLRE 111 (423)
T ss_pred ------------------------------------------------HHcCceEEEEEeeccCcCCChHHHh
Confidence 6889999999999999999999987
|
|
| >COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-07 Score=108.62 Aligned_cols=76 Identities=28% Similarity=0.301 Sum_probs=60.5
Q ss_pred cccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCcccccccccccccc
Q psy15051 51 DLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 51 dl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
+|.....-||||+ +|||..+|.| |+++. +...|||+ |+|++.| +|.+
T Consensus 17 tF~~A~~~l~yl~-~LGIShLY~S----------------PIftA~pGStHGYD--VvD~t~I-------------nPeL 64 (889)
T COG3280 17 TFADARALLDYLA-DLGISHLYLS----------------PIFTARPGSTHGYD--VVDPTEI-------------NPEL 64 (889)
T ss_pred CHHHHHHhhHHHH-hcCchheecc----------------chhhcCCCCCCCcc--CCCcccc-------------Chhh
Confidence 6778888899999 9999955555 45443 34579994 5555554 5599
Q ss_pred CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|+.+.|..|++ +|.+||.+| +|| ||||-.
T Consensus 65 GG~egl~rLvaalk~~GlGlI--------~DI-------VPNHMa 94 (889)
T COG3280 65 GGEEGLERLVAALKSRGLGLI--------VDI-------VPNHMA 94 (889)
T ss_pred cChHHHHHHHHHHHhcCCceE--------EEe-------cccchh
Confidence 99999999998 599999999 999 999964
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=84.46 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcccccC----CC-eEEEccCCcEEEEE-EEcC--------CcEEEEEEECCCCcEEEEcCCCccC-
Q psy15051 980 HYSVYKDLTTLRATSGAVRM----GD-YKISTPNNYVFILT-RTEG--------STSVYLIINLNSRTETVDLSDCIEN- 1044 (1065)
Q Consensus 980 l~~~~r~Li~LRk~~paL~~----G~-~~~l~~~~~viaf~-R~~~--------~~~vlVv~N~s~~~~~v~l~~~~~~- 1044 (1065)
..++-..|-++|+++|-|+. ++ |..+..++.++-|. |+.. .+++++|.|.+.++.+|++.+...+
T Consensus 700 q~~fnlaLR~fR~~~PWLr~NL~~~Drf~~i~~~~~TlfyglR~~P~~~d~~~~~~~v~~v~hMgG~p~tv~l~dwL~ld 779 (811)
T PF14872_consen 700 QTAFNLALRQFRRAHPWLRHNLRGGDRFNRISDDGRTLFYGLRTNPQEEDTSEDPEQVAMVAHMGGEPMTVTLGDWLQLD 779 (811)
T ss_pred HHHHHHHHHHHhhcCchhhhcccccccccccCCCCeEEEEEecCCCCcccccCCCccEEEEEecCCCceEecHHHhhhhh
Confidence 44677899999999998853 33 34344444444343 4432 3689999999999999998876532
Q ss_pred CCcEEEEEccCC
Q psy15051 1045 GGDVAIFTSSVN 1056 (1065)
Q Consensus 1045 ~~~~~v~~~s~~ 1056 (1065)
-.+|++.+.|.-
T Consensus 780 ~~~W~~aiasPg 791 (811)
T PF14872_consen 780 LSEWQVAIASPG 791 (811)
T ss_pred hhhheEeecCCC
Confidence 356777776643
|
|
| >PF14872 GHL5: Hypothetical glycoside hydrolase 5 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0032 Score=74.80 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccc
Q psy15051 300 QPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLK 363 (1065)
Q Consensus 300 q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~ 363 (1065)
.-|||+.||-|| .-++++-|-=++.|+||+|+|-+.=
T Consensus 356 GQdlnhq~P~VR---------------------------AILLEmQRRK~n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 356 GQDLNHQNPVVR---------------------------AILLEMQRRKINTGADGIRVDGGQD 392 (811)
T ss_pred cccccccChHHH---------------------------HHHHHHHHhhcccCCceeEeccccc
Confidence 359999999998 4467777776788999999997643
|
|
| >KOG3625|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00039 Score=84.34 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=75.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCC------CHHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFG------TMEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~G------t~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
....+|.-+|+-|.|.|+++|+.+-+.....|...|-..+++.+. +.||.++||+.+|
T Consensus 143 eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~---------------- 206 (1521)
T KOG3625|consen 143 EWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLK---------------- 206 (1521)
T ss_pred hhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHH----------------
Confidence 459999999999999999999999876557899999999999996 7899999999993
Q ss_pred cccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhh
Q psy15051 672 HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKS 745 (1065)
Q Consensus 672 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~ 745 (1065)
++-+|--|-|+|+|||+.+++|..+-
T Consensus 207 ------------------------------------------------rewnvlsi~DvV~NHtAnns~WlleH 232 (1521)
T KOG3625|consen 207 ------------------------------------------------REWNVLSITDVVYNHTANNSKWLLEH 232 (1521)
T ss_pred ------------------------------------------------hhcCeeeeehhhhhccccCCchhHhC
Confidence 56689999999999999999998773
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0026 Score=76.18 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=50.5
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCCCC--------CCCCcCCCCccc----CCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGPNG--------DIGYDISNHTEV----GKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~--------~~GY~~~dy~~i----dp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
.-|.+..+-+|++|||..||-|-+-+... .-||+-+|-|.+ .-.||+.+||+.-|+++|+.||+||.|
T Consensus 587 ~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~GiqviaD 666 (809)
T PF02324_consen 587 VVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIAD 666 (809)
T ss_dssp HHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhhh
Confidence 45777889999999999999998886432 269999987665 567999999999999999999999999
Q ss_pred ccc
Q psy15051 665 KQT 667 (1065)
Q Consensus 665 vv~ 667 (1065)
+|+
T Consensus 667 wVp 669 (809)
T PF02324_consen 667 WVP 669 (809)
T ss_dssp E-T
T ss_pred hch
Confidence 998
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.098 Score=51.97 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=47.0
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-+++||++|+++|-+.-=- .+.+-|.|+..-..+|.++ .+-|+++|++||++||+|+.=+.+
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~---h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKC---HGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHhCCCEEEEEccc---ccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 345789999999999774311 1112366777778899998 788899999998877777765554
|
|
| >PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.018 Score=69.34 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred hcccceEEEecccccCcCCC-CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc--------
Q psy15051 28 WKNTVIYQILVPSFKDSNND-GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK-------- 98 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~-g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~-------- 98 (1065)
....||||=|- -|++-... -.-+-+=|.+..+-+| ++||| ++||. |.|+|...
T Consensus 562 LDSqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk-~wGIT---------------sFemA-PQY~Ss~D~tFLDSii 623 (809)
T PF02324_consen 562 LDSQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFK-SWGIT---------------SFEMA-PQYRSSTDGTFLDSII 623 (809)
T ss_dssp HHT-EEEE----TTB---SSGGGSHHHHHHHTHHHHH-HTTEE---------------EEE-----S-B--SSSSHHHHT
T ss_pred hhcchhhcccc-ccccCCCChHHHHHHHHHHhHHHHH-hcCcc---------------eeeeC-cceecCCCCcchhhHh
Confidence 34678998653 23322111 1133455777789999 99999 55555 65554322
Q ss_pred ccCccceeecccccCCCccccccccccccccCcHHHHHHHHHH-HhCCCEEE
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDA-KNDSLHLI 149 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~a-h~~gi~vi 149 (1065)
.-||+ ..|=+++- ..-..+||+.+||+.-|+| |+.||+||
T Consensus 624 qNGYA--FtDRYDLg---------~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 624 QNGYA--FTDRYDLG---------MSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp T-SSS--BS-TT-SS---------SSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred hcCcc--ccchhhhc---------CCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 24775 33433333 3446689999999999997 99999999
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A. |
| >PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.022 Score=66.61 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=57.7
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCcccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKY 129 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~ 129 (1065)
|.|..-.++|..++ ++|.+-|+.+|...-+ ..+..|. |.|+..+++-+. -+..=
T Consensus 19 G~~~~W~~~l~~~~-~~GYNmIHftPlq~~G----------------~S~S~YS--I~Dql~~~~~~~-------~~~~~ 72 (423)
T PF14701_consen 19 GPFSDWEKHLKVIS-EKGYNMIHFTPLQERG----------------ESNSPYS--IYDQLKFDPDFF-------PPGKE 72 (423)
T ss_pred CCHhHHHHHHHHHH-HcCCcEEEecccccCC----------------CCCCCcc--ccchhhcChhhc-------CCCcc
Confidence 89999999999999 9999955555544433 2334453 666666664210 00111
Q ss_pred CcHHHHHHHHH-H-HhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 130 FYMKKFKHRID-A-KNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 130 Gt~~df~~Li~-a-h~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.++++++++|. + ++.||..| .|| |.|||+
T Consensus 73 ~~~~~v~~~v~~~~~~~~ll~~--------~Dv-------V~NHtA 103 (423)
T PF14701_consen 73 STFEDVKEFVKEAEKKYGLLSM--------TDV-------VLNHTA 103 (423)
T ss_pred ccHHHHHHHHHHHHHHcCceEE--------EEE-------eeccCc
Confidence 34689999996 4 78999999 998 999986
|
|
| >PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.025 Score=57.93 Aligned_cols=63 Identities=14% Similarity=0.326 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHhcccccCCCe-------EEEcc----CCcEEEEEEEcC----------CcEEEEEEECCCCcEEEE
Q psy15051 979 SHYSVYKDLTTLRATSGAVRMGDY-------KISTP----NNYVFILTRTEG----------STSVYLIINLNSRTETVD 1037 (1065)
Q Consensus 979 ~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~----~~~viaf~R~~~----------~~~vlVv~N~s~~~~~v~ 1037 (1065)
...++|+.|++||+++|.|+.++- .+... .+++|++.-.++ -+.++||+|.+.++++++
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~~ 121 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTFT 121 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEEE
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEEE
Confidence 467899999999999999988763 33332 358999998863 257999999999999999
Q ss_pred cCCC
Q psy15051 1038 LSDC 1041 (1065)
Q Consensus 1038 l~~~ 1041 (1065)
++.+
T Consensus 122 ~~~~ 125 (168)
T PF11852_consen 122 VPGL 125 (168)
T ss_dssp TGGG
T ss_pred cCCc
Confidence 9864
|
Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A. |
| >PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.084 Score=47.40 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=31.6
Q ss_pred EEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCcc
Q psy15051 1004 ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIE 1043 (1065)
Q Consensus 1004 ~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~ 1043 (1065)
...+.++||+|.|..+++.++|++|.+++++++++....+
T Consensus 4 hf~P~~gvYvYfR~~~~~tVmVilN~n~~~~~ldl~ry~E 43 (78)
T PF10438_consen 4 HFAPQDGVYVYFRYYDGKTVMVILNKNDKEQTLDLKRYAE 43 (78)
T ss_dssp E---BTTEEEEEEEESSEEEEEEEE-SSS-EEEEGGGGHH
T ss_pred eECccCCEEEEEEEcCCCEEEEEEcCCCCCeEEcHHHHHH
Confidence 3456788999999999999999999999999999986653
|
Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B. |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=55.48 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHc-CCCeeeecCcccc
Q psy15051 302 HCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKR-GVDGFGMDSVLKL 364 (1065)
Q Consensus 302 dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l 364 (1065)
=||-.+|+|| ++|+++++=-+++ .|||+-+|=.-+.
T Consensus 130 ~lnP~~PeVr---------------------------~~i~~~v~Eiv~~YdvDGIhlDdy~yp 166 (311)
T PF02638_consen 130 WLNPGHPEVR---------------------------DYIIDIVKEIVKNYDVDGIHLDDYFYP 166 (311)
T ss_pred EECCCCHHHH---------------------------HHHHHHHHHHHhcCCCCeEEecccccc
Confidence 4788999998 7889988888864 9999999954443
|
|
| >PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.064 Score=49.80 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred cCCcEEEEEEEc--CCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1007 PNNYVFILTRTE--GSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1007 ~~~~viaf~R~~--~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
.+++|+||.|.. ++ .+|||+||+++....+..-...-++.++.+++|+...++
T Consensus 7 ~~~~v~af~R~~~~~~-~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~ 61 (95)
T PF02806_consen 7 NENNVIAFERKDKGDD-RVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYG 61 (95)
T ss_dssp ESSSEEEEEETTTETT-EEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEE
T ss_pred CCCCEEEEEEcCCCCC-EEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEEC
Confidence 467899999984 44 899999999983333332222236888888888665544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A .... |
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.92 Score=51.69 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhcCCce---eecccccccccccccchhhhhhccccccccccccCccccCCCCCCCcc---Ccccc
Q psy15051 641 FGTMEDFDELVKLVHSKGKQK---ISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA---GNQNR 714 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~V---IlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 714 (1065)
|.+.++++++++++.++||-+ ++|........ .....|+. ++...
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~-----------------------------~~~f~~d~~~FPd~~~ 70 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQ-----------------------------WCDFEFDPDRFPDPEG 70 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCc-----------------------------ceeeEECcccCCCHHH
Confidence 367899999999999999875 33432210000 00111111 12234
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc----ccCCCHHHHHHHHHH
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH----INITSREVMRSQKDV 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~----ln~~n~~v~~~l~~~ 790 (1065)
.....|++|+++++-+.| +++.+++.|.+..+ .+|++... +|.+. ....|.. +|+.||++++++.+.
T Consensus 71 ~i~~l~~~G~~~~~~~~P-~i~~~~~~~~e~~~-----~g~~v~~~--~g~~~-~~~~w~g~~~~~Dftnp~a~~w~~~~ 141 (308)
T cd06593 71 MLSRLKEKGFKVCLWINP-YIAQKSPLFKEAAE-----KGYLVKKP--DGSVW-QWDLWQPGMGIIDFTNPDACKWYKDK 141 (308)
T ss_pred HHHHHHHCCCeEEEEecC-CCCCCchhHHHHHH-----CCeEEECC--CCCee-eecccCCCcccccCCCHHHHHHHHHH
Confidence 444469999999999887 67767777777652 35565432 23311 1122333 999999999999988
Q ss_pred HHhc
Q psy15051 791 VQSF 794 (1065)
Q Consensus 791 lk~~ 794 (1065)
++++
T Consensus 142 ~~~~ 145 (308)
T cd06593 142 LKPL 145 (308)
T ss_pred HHHH
Confidence 8763
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >PF14871 GHL6: Hypothetical glycosyl hydrolase 6 | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.6 Score=46.45 Aligned_cols=24 Identities=0% Similarity=-0.027 Sum_probs=19.8
Q ss_pred cccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 125 IICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 125 i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
..|.++ -+=|+++|+ ||++||+|+
T Consensus 37 ~hp~L~-~Dllge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 37 RHPGLK-RDLLGEQVEACHERGIRVP 61 (132)
T ss_pred CCCCCC-cCHHHHHHHHHHHCCCEEE
Confidence 356677 677799998 699999998
|
|
| >COG1649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.6 Score=51.29 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CCCcccccchhhhhhhhHhhhCCCCcCCCCCCC
Q psy15051 46 NDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTD 78 (1065)
Q Consensus 46 ~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~ 78 (1065)
..+..+=..+...|+.|+ .||+|++|+.-..+
T Consensus 57 ~~v~~~~~el~~~ld~l~-~ln~NTv~~qV~~~ 88 (418)
T COG1649 57 SRVLFQRQELKDILDDLQ-KLNFNTVYPQVWND 88 (418)
T ss_pred CcccccHHHHHHHHHHHH-HcCCceeEEEEecC
Confidence 334455566777799999 99999666544333
|
|
| >cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase | Back alignment and domain information |
|---|
Probab=86.68 E-value=4.1 Score=46.40 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=34.6
Q ss_pred cHHhhhHHHHHcCc--CEEEeCCCCcCCCCCCCCcCCCCcccCC-CCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGV--ETLWLTPFYSGPNGDIGYDISNHTEVGK-DFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGv--naI~L~PI~~~~~~~~GY~~~dy~~idp-~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.|.+.++.++++|| +.|+|=-=+... . .+| ..|+ +|- +.++||+++|++|+|+++=+.
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~----g~f-~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETC---Y----GDF-DFDPTKFP---DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCcccc---C----Ccc-ccChhhCC---CHHHHHHHHHHCCCeEEEEEC
Confidence 67778888899884 577764322111 1 122 3443 554 478999999666665555443
|
Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. |
| >PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.9 Score=50.34 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=40.9
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCC--C--CCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKD--F--GTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~--~--Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
..+.++.+|++|+|+|-|.--.+... ..+|. + ...+.|+++|+.|+++||+||+|+-.
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~-----------~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ-----------EPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS-----------TTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc-----------CCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 46779999999999999864332111 11111 2 23689999999999999999999654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A .... |
| >PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.13 E-value=3.1 Score=47.54 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=39.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCC-CCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGD-IGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~-~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.+.|+.|+++|+|+|.+-=-.....-| .-+.+..-+......+ +.+=|+.+|++|||+||+|..=+
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE
Confidence 78889999999999999874221110000 0111111111111111 25679999999999999776443
|
|
| >cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose | Back alignment and domain information |
|---|
Probab=81.76 E-value=5.6 Score=45.33 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCcccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKL 364 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l 364 (1065)
.-+||.||+++ +...+.++.+++.|||||-+|....+
T Consensus 125 ~~~Dftnp~a~---------------------------~w~~~~~~~~~~~Gid~~~~D~~e~~ 161 (308)
T cd06593 125 GIIDFTNPDAC---------------------------KWYKDKLKPLLDMGVDCFKTDFGERI 161 (308)
T ss_pred ccccCCCHHHH---------------------------HHHHHHHHHHHHhCCcEEecCCCCCC
Confidence 34689999997 56777788888999999999976554
|
YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes. |
| >cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=81.69 E-value=8.5 Score=44.75 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=40.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-------CCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-------DFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-------~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-||.+..+++|.+++-= .+ ...|.+.+..|=.+.. .|=|.+|+++||+-|.++||.||-.+.+
T Consensus 19 ~ik~~Id~ma~~KlN~lh~Hl-tD--d~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 19 SIKRTIDAMAYNKLNVLHWHI-TD--SQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred HHHHHHHHHHHhCCcEEEEeE-Ec--CCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC
Confidence 677888999999999988730 00 0012222222211111 1117999999999996666666666555
|
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in |
| >PRK14508 4-alpha-glucanotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=1.7 Score=52.80 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=42.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCH
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTM 644 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~ 644 (1065)
++.+-++.+++.|++.|+|+|+.....++.+|.+.+=++.||-|=++
T Consensus 28 dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l 74 (497)
T PRK14508 28 GAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDL 74 (497)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCh
Confidence 88999999999999999999999987666799999999999888554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1065 | ||||
| 1uok_A | 558 | Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas | 2e-41 | ||
| 2ze0_A | 555 | Alpha-glucosidase Gsj Length = 555 | 3e-40 | ||
| 1m53_A | 570 | Crystal Structure Of Isomaltulose Synthase (Pali) F | 5e-24 | ||
| 1m53_A | 570 | Crystal Structure Of Isomaltulose Synthase (Pali) F | 1e-16 | ||
| 4gin_A | 584 | Crystal Structure Of The Mutb R284c Mutant From Cry | 2e-22 | ||
| 4gin_A | 584 | Crystal Structure Of The Mutb R284c Mutant From Cry | 6e-21 | ||
| 4gi6_A | 557 | Crystal Structure Of The Mutb F164l Mutant In Compl | 2e-22 | ||
| 4gi6_A | 557 | Crystal Structure Of The Mutb F164l Mutant In Compl | 7e-21 | ||
| 2pwg_A | 556 | Crystal Structure Of The Trehalulose Synthase Mutb | 2e-22 | ||
| 2pwg_A | 556 | Crystal Structure Of The Trehalulose Synthase Mutb | 6e-21 | ||
| 2pwf_A | 556 | Crystal Structure Of The Mutb D200a Mutant In Compl | 2e-22 | ||
| 2pwf_A | 556 | Crystal Structure Of The Mutb D200a Mutant In Compl | 7e-21 | ||
| 1zja_A | 557 | Crystal Structure Of The Trehalulose Synthase Mutb | 2e-22 | ||
| 1zja_A | 557 | Crystal Structure Of The Trehalulose Synthase Mutb | 7e-21 | ||
| 2pwe_A | 556 | Crystal Structure Of The Mutb E254q Mutant In Compl | 2e-22 | ||
| 2pwe_A | 556 | Crystal Structure Of The Mutb E254q Mutant In Compl | 7e-21 | ||
| 4h2c_A | 557 | Trehalulose Synthase Mutb R284c Mutant Length = 557 | 2e-22 | ||
| 4h2c_A | 557 | Trehalulose Synthase Mutb R284c Mutant Length = 557 | 7e-21 | ||
| 3gbd_A | 558 | Crystal Structure Of The Isomaltulose Synthase Smua | 2e-21 | ||
| 3gbd_A | 558 | Crystal Structure Of The Isomaltulose Synthase Smua | 8e-15 | ||
| 4aie_A | 549 | Structure Of Glucan-1,6-Alpha-Glucosidase From Lact | 6e-20 | ||
| 4aie_A | 549 | Structure Of Glucan-1,6-Alpha-Glucosidase From Lact | 1e-13 | ||
| 3axh_A | 589 | Crystal Structure Of Isomaltase In Complex With Iso | 9e-19 | ||
| 3axh_A | 589 | Crystal Structure Of Isomaltase In Complex With Iso | 1e-05 | ||
| 3a47_A | 589 | Crystal Structure Of Isomaltase From Saccharomyces | 1e-18 | ||
| 3a47_A | 589 | Crystal Structure Of Isomaltase From Saccharomyces | 1e-05 | ||
| 2zid_A | 543 | Crystal Structure Of Dextran Glucosidase E236q Comp | 5e-18 | ||
| 2zid_A | 543 | Crystal Structure Of Dextran Glucosidase E236q Comp | 1e-17 | ||
| 2zic_A | 543 | Crystal Structure Of Streptococcus Mutans Dextran G | 6e-18 | ||
| 2zic_A | 543 | Crystal Structure Of Streptococcus Mutans Dextran G | 2e-17 | ||
| 1wza_A | 488 | Crystal Structure Of Alpha-Amylase From H.Orenii Le | 2e-15 | ||
| 3k8k_A | 669 | Crystal Structure Of Susg Length = 669 | 1e-12 | ||
| 3k8l_A | 669 | Crystal Structure Of Susg-D498n Mutant With Maltohe | 2e-12 | ||
| 4aee_A | 696 | Crystal Structure Of Maltogenic Amylase From S.Mari | 1e-11 | ||
| 1lwh_A | 441 | Crystal Structure Of T. Maritima 4-Alpha-Glucanotra | 2e-09 | ||
| 1sma_A | 588 | Crystal Structure Of A Maltogenic Amylase Length = | 2e-09 | ||
| 1g1y_A | 585 | Crystal Structure Of Alpha-Amylase Ii (Tvaii) From | 5e-09 | ||
| 1jf5_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 5e-09 | ||
| 1wzk_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 5e-09 | ||
| 1wzl_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T | 5e-09 | ||
| 1vfm_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 5e-09 | ||
| 1jl8_A | 585 | Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact | 5e-09 | ||
| 1jf6_A | 585 | Crystal Structure Of Thermoactinomyces Vulgaris R-4 | 5e-09 | ||
| 1wzm_A | 585 | Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t | 5e-09 | ||
| 1bvz_A | 585 | Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul | 5e-09 | ||
| 1j0h_A | 588 | Crystal Structure Of Bacillus Stearothermophilus Ne | 1e-07 | ||
| 1j0j_A | 588 | Crystal Structure Of Neopullulanase E357q Complex W | 3e-07 | ||
| 1gvi_A | 588 | Thermus Maltogenic Amylase In Complex With Beta-Cd | 2e-06 | ||
| 2wc7_A | 488 | Crystal Structure Of Nostoc Punctiforme Debranching | 3e-06 | ||
| 1mvy_A | 628 | Amylosucrase Mutant E328q Co-Crystallized With Malt | 8e-06 | ||
| 1jgi_A | 628 | Crystal Structure Of The Active Site Mutant Glu328g | 8e-06 | ||
| 4fls_A | 628 | Crystal Structure Of Amylosucrase Inactive Double M | 3e-05 | ||
| 4flo_A | 628 | Crystal Structure Of Amylosucrase Double Mutant A28 | 3e-05 | ||
| 4flr_A | 628 | Crystal Structure Of Amylosucrase Double Mutant A28 | 3e-05 | ||
| 4flq_A | 628 | Crystal Structure Of Amylosucrase Double Mutant A28 | 3e-05 | ||
| 1g5a_A | 628 | Amylosucrase From Neisseria Polysaccharea Length = | 3e-05 | ||
| 3ueq_A | 632 | Crystal Structure Of Amylosucrase From Neisseria Po | 3e-05 | ||
| 3ucq_A | 655 | Crystal Structure Of Amylosucrase From Deinococcus | 7e-05 | ||
| 1ea9_C | 583 | Cyclomaltodextrinase Length = 583 | 1e-04 | ||
| 1qho_A | 686 | Five-Domain Alpha-Amylase From Bacillus Stearotherm | 2e-04 |
| >pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558 | Back alignment and structure |
|
| >pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj Length = 555 | Back alignment and structure |
|
| >pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570 | Back alignment and structure |
|
| >pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570 | Back alignment and structure |
|
| >pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584 | Back alignment and structure |
|
| >pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584 | Back alignment and structure |
|
| >pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557 | Back alignment and structure |
|
| >pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557 | Back alignment and structure |
|
| >pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556 | Back alignment and structure |
|
| >pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556 | Back alignment and structure |
|
| >pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556 | Back alignment and structure |
|
| >pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556 | Back alignment and structure |
|
| >pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557 | Back alignment and structure |
|
| >pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557 | Back alignment and structure |
|
| >pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556 | Back alignment and structure |
|
| >pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556 | Back alignment and structure |
|
| >pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557 | Back alignment and structure |
|
| >pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557 | Back alignment and structure |
|
| >pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558 | Back alignment and structure |
|
| >pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558 | Back alignment and structure |
|
| >pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549 | Back alignment and structure |
|
| >pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549 | Back alignment and structure |
|
| >pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose Length = 589 | Back alignment and structure |
|
| >pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose Length = 589 | Back alignment and structure |
|
| >pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces Cerevisiae Length = 589 | Back alignment and structure |
|
| >pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces Cerevisiae Length = 589 | Back alignment and structure |
|
| >pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543 | Back alignment and structure |
|
| >pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543 | Back alignment and structure |
|
| >pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543 | Back alignment and structure |
|
| >pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543 | Back alignment and structure |
|
| >pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488 | Back alignment and structure |
|
| >pdb|3K8K|A Chain A, Crystal Structure Of Susg Length = 669 | Back alignment and structure |
|
| >pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose Length = 669 | Back alignment and structure |
|
| >pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus Length = 696 | Back alignment and structure |
|
| >pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441 | Back alignment and structure |
|
| >pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588 | Back alignment and structure |
|
| >pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin Complex Length = 585 | Back alignment and structure |
|
| >pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2 Mutant F286a Length = 585 | Back alignment and structure |
|
| >pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt D465n Length = 585 | Back alignment and structure |
|
| >pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt R469l Length = 585 | Back alignment and structure |
|
| >pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2ALPHA-Cyclodextrin Complex Length = 585 | Back alignment and structure |
|
| >pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin Based On A Co- Crystallization With Methyl Beta-Cyclodextrin Length = 585 | Back alignment and structure |
|
| >pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase Mutant F286y Length = 585 | Back alignment and structure |
|
| >pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii) Mutatnt R469k Length = 585 | Back alignment and structure |
|
| >pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R- 47 Length = 585 | Back alignment and structure |
|
| >pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588 | Back alignment and structure |
|
| >pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588 | Back alignment and structure |
|
| >pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588 | Back alignment and structure |
|
| >pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme( Npde)(Acarbose Soaked) Length = 488 | Back alignment and structure |
|
| >pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With Maltoheptaose. Length = 628 | Back alignment and structure |
|
| >pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of Amylosucrase From Neisseria Polysaccharea In Complex With The Natural Substrate Sucrose Length = 628 | Back alignment and structure |
|
| >pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant F290k-E328q From Neisseria Polysaccharea In Complex With Sucrose Length = 628 | Back alignment and structure |
|
| >pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290c From Neisseria Polysaccharea Length = 628 | Back alignment and structure |
|
| >pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290l From Neisseria Polysaccharea Length = 628 | Back alignment and structure |
|
| >pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290i From Neisseria Polysaccharea Length = 628 | Back alignment and structure |
|
| >pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea Length = 628 | Back alignment and structure |
|
| >pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria Polysaccharea In Complex With Turanose Length = 632 | Back alignment and structure |
|
| >pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus Geothermalis Length = 655 | Back alignment and structure |
|
| >pdb|1EA9|C Chain C, Cyclomaltodextrinase Length = 583 | Back alignment and structure |
|
| >pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424 | Back alignment and structure |
|---|
Score = 255 bits (652), Expect = 1e-75
Identities = 75/489 (15%), Positives = 157/489 (32%), Gaps = 126/489 (25%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
++WW +Y+I + G G+L G + ++DYL L V+
Sbjct: 9 AQKWWHTGALYRI--GDLQAFQGHGAGNLAG---------------LKGRLDYLSSLKVK 51
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
L L P + D+ ++ ++ +FG+ EDFD L++ K
Sbjct: 52 GLVLGPIHKNQKDDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKS-------------- 95
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ I L+ G +W V
Sbjct: 96 -------IRVI-----------LDLTPNYRGENSW-------------------FSTQVD 118
Query: 733 NHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQ 792
++ D W G G + +++ S + +++ +
Sbjct: 119 TVATKVKDA-------------LEFWLQA--GVDGFQVRDIENLKDAS-SFLAEWQNITK 162
Query: 793 SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAY 852
F ++I S L+++ + L + ++ + S + +++V Y
Sbjct: 163 GFSEDRLLIAGTNSSDLQQILSLLESNK----DLLLTSSYLSD--SGSTGEHTKSLVTQY 216
Query: 853 LKSLPSGKWSSWMVGGHSITRIATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELGMESPI 911
L + + W SW + R+ T + P L+ ++ LPGT V GDE+G+++
Sbjct: 217 LNATGNR-WCSWSLSQA---RLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAA 272
Query: 912 LRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQ 971
L + P W++ +P + +
Sbjct: 273 LPGQPMEAP--------------------VMLWDESSFP-------DIPG-AVSANMTVK 304
Query: 972 AEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLII-NLN 1030
+ + S S+++ L+ R+ ++ GD+ + +F R +L++ N
Sbjct: 305 GQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNFG 364
Query: 1031 SRTETVDLS 1039
+ L
Sbjct: 365 DVGLSAGLQ 373
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLD 69
++WW +Y+I + G G+L G R YL +L +
Sbjct: 9 AQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLS-SLKVK 51
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 4e-65
Identities = 52/382 (13%), Positives = 114/382 (29%), Gaps = 90/382 (23%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPN-------- 771
H +G+K++++ +H+ H WF K+ + Y +YYVW +
Sbjct: 80 HDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANK--ETDLDERREWDGEKIW 137
Query: 772 --------------------NW-----------------------------KHINITSRE 782
N+ KH+ T +
Sbjct: 138 HPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQ 197
Query: 783 VMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNA 842
+R K + + + E ++ V ++ +N++ +
Sbjct: 198 NVRFWKYFLSDLKG--IFLAEIWAE-ARMVDEHGR-----IFGYMLNFDTSHCIKEAVWK 249
Query: 843 KDLENVVNAYLKS-LPSGKWSSWMVGGHSITRIATRY---SPDLVDAMNMLTLLLPGTAV 898
++ ++ + ++ + H ++R+A+ S + + + LPG +
Sbjct: 250 ENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPL 309
Query: 899 TFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958
F GDELGM K Y K + PF WN+ W
Sbjct: 310 VFYGDELGM-------------------KGVYQKPNTEVVLDPFPWNESMCVEGQTFWKW 350
Query: 959 LPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTE 1018
+ + ++ + +K+ S S T R + + + + + +
Sbjct: 351 PAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDRAKLEFLCKEDKFLVYRLYD 410
Query: 1019 GSTSVYLIINLNSRTETVDLSD 1040
S+ + NL+ +
Sbjct: 411 DQHSLKVFHNLSGEEVVFEGVK 432
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-35
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFY 620
+ YQI V SF+D N DG+GD R G+ + YLKELG++ +WL P +
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFR---------------GLKNAVSYLKELGIDFVWLMPVF 46
Query: 621 SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
S + GYD+ + ++G+ +F E+++ H G
Sbjct: 47 SSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSG 83
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 32 VIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ YQI V SF+D N DG+GD RG ++ YL+ LG+D
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRG--LKNAVSYLK-ELGID 38
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-47
Identities = 68/398 (17%), Positives = 116/398 (29%), Gaps = 116/398 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKH---------------DWFI---------------KSAQKI 749
H+ G+K++++ NH+S +H D+++
Sbjct: 92 HQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHY 151
Query: 750 DPYTNYY-----------------V----------WKD-GLNG----------KPGTPPN 771
P T Y V W G++G P
Sbjct: 152 SP-TGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDK 210
Query: 772 N---WKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDT---QGTH 825
N W+ R+ + K V ++ E + S E VA Y+ G
Sbjct: 211 NFTWWEKF----RQEIEEVKPV--------YLVGEVWDIS-ETVAPYFKYGFDSTFNFKL 257
Query: 826 LSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD 884
K +++ Y + + G + + H RI + D
Sbjct: 258 AEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNK 317
Query: 885 A--MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942
A + L LPG + G+E+GM Q + R PF
Sbjct: 318 ARVAASIYLTLPGNPFIYYGEEIGMR-------GQGP---------------HEVIREPF 355
Query: 943 QWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002
QW + G + W P N + + E+K S + Y+ L R + G
Sbjct: 356 QWYNGSGEGET---YWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKI 412
Query: 1003 KISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+I V R +Y+ NL +R + ++
Sbjct: 413 EIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVAS 450
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 6e-36
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 24/111 (21%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKE------- 608
+ K+ Y+I V SF DS+ DGIGDL+ GIIEK+DYL +
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLK---------------GIIEKLDYLNDGDPETIA 45
Query: 609 -LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV +WL P + P+ GYD++++ ++ D+GT+EDF +LV+ H +G
Sbjct: 46 DLGVNGIWLMPIFKSPSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-11
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRG 54
+ K+ Y+I V SF DS+ DGIGDL+G
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKG 28
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-40
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 15/119 (12%)
Query: 540 STASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGI 599
S + WWK V YQI SFKD+N+DGIGD+RG I
Sbjct: 3 SLNQDIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRG---------------I 47
Query: 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
IEK+DYLK LG++ +W+ P Y PN D GYDISN+ ++ K++GTMEDFD LV + +
Sbjct: 48 IEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 6e-32
Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 30/278 (10%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+ E + L++ ++++ + ++ + ++ S + +++
Sbjct: 262 VATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIIS 321
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAGD 903
++ W+++ + H R + + D A+ +TL T + G
Sbjct: 322 KMDVTVGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGS 381
Query: 904 ELGME-SPILRYEDQRDPEG----------YIFGKDNYLKVC----RDGSRVPFQWNDQE 948
ELGM P + + D E +L RD SR PFQWND
Sbjct: 382 ELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKVTATEFLDNVRLTSRDNSRTPFQWNDTL 441
Query: 949 NAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-ISTP 1007
NAGF++ K W ++PNY +NA+ E+ + S + YK + LR A+ G Y+ ++
Sbjct: 442 NAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVYGAYQDLNPQ 501
Query: 1008 NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
+N V+ TRT G+ +++N L
Sbjct: 502 DNTVYAYTRTLGNERYLVVVNFKEYPVRYTLPANDAIE 539
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 4e-15
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNWK 774
+ M+++++ V NH+S++H WFI+S K +PY +YY W+D GK PPNN+
Sbjct: 103 KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRD---GKDNQPPNNYP 155
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 11 STASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGL 68
S + WWK V YQI SFKD+N+DGIGD+RG + ++ YL+ +LG+
Sbjct: 3 SLNQDIHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRG--IIEKLDYLK-SLGI 59
Query: 69 D 69
D
Sbjct: 60 D 60
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 2e-40
Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K WWK V YQI SF D+N DGIGDLRG IIEK+DYL ELGV+
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRG---------------IIEKLDYLVELGVD 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+ P Y PN D GYDIS++ + +FGTM+DFDEL+ H +G
Sbjct: 47 IVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-32
Identities = 62/296 (20%), Positives = 118/296 (39%), Gaps = 34/296 (11%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN---KFGATS-NAKDLENVVNAYL 853
+M + EA ++++ ++ G + ++ +E + + S + + L+ + +
Sbjct: 251 IMTVGEANGVTVDEAEQWVGE-ENGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQ 309
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDELGM 907
K L + W++ + H + R + + D A+ L + GT + G E+GM
Sbjct: 310 KGLENRGWNALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGM 369
Query: 908 E-SPILRYEDQRDPEGYIFGKDNY-------------LKVC----RDGSRVPFQWNDQEN 949
D RD Y + + RD SR P QW+ N
Sbjct: 370 TNVRFDDIRDYRDVSA----LRLYELERAKGRTHEEAMTIIWKTGRDNSRTPMQWSGASN 425
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
AGF+ W+ V+ NY T+N +AE++ S +S Y+ + LR + G Y + N+
Sbjct: 426 AGFTTGTPWIKVNENYRTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTYDLLLENH 485
Query: 1010 -YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
++ TRT G +++NL+ R D+A+ V + +
Sbjct: 486 PSIYAYTRTLGRDRALVVVNLSDRPSLYRYDGFRLQSSDLALSNYPVRPHKNATRF 541
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 4e-15
Identities = 24/56 (42%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
HR G+K++++ V NH+S++H WFI+S + + +P ++Y+W+D GK G PNNW+
Sbjct: 89 HRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRD---GKDGREPNNWE 141
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+K WWK V YQI SF D+N DGIGDLRG + ++ YL LG+D
Sbjct: 2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRG--IIEKLDYLV-ELGVD 46
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
++ +WL +G+DGF +D++ + + + P P ++QP E
Sbjct: 184 MVNWWLDKGIDGFRIDAISHIKKKPGLPDLP-------NPKGLKYVPSFAGHMNQPGIME 236
Query: 404 ML 405
L
Sbjct: 237 YL 238
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-40
Identities = 44/106 (41%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
QK WW +YQI SF D+N DGIGDL+G I K+DYL++LGV
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKG---------------ITSKLDYLQKLGVM 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WL+P Y P D GYDI+N+ + FG M D D L+ +G
Sbjct: 47 AIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-29
Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 34/298 (11%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS---NAKDLENV 848
L+ + E + + E +Y + Q H+ + ++ N L+ +
Sbjct: 231 LLTVGETWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTI 290
Query: 849 VNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFA 901
N + L G+ W+S H + R+ + + A+ +L L+ GT +
Sbjct: 291 FNKWQTELELGQGWNSLFWNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQ 350
Query: 902 GDELGME-SPILRYEDQRDPEGYIF-------GKD------NYLKVCRDGSRVPFQWNDQ 947
G+E+GM P + D E + GK + + RD +R P QW+
Sbjct: 351 GEEIGMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDAS 410
Query: 948 ENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006
+NAGFS A K+WLPV+PNY +N QA K S + Y+ L LR + + D+++
Sbjct: 411 QNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLP 470
Query: 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGKL 1064
+ VF R +++N++ + E +++ + + I ++ ++ LA+ KL
Sbjct: 471 TADKVFAYLRKVREERYLIVVNVSDQEEVLEID---VDKQETLISNTNESAALANHKL 525
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-12
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
G+KI+++ V NH+S++H WFI++ +YY+W D PN+ +
Sbjct: 89 KMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCD--------QPNDLE 136
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-12
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
QK WW +YQI SF D+N DGIGDL+G + + YL+ LG+
Sbjct: 2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKG--ITSKLDYLQ-KLGVM 46
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 3e-40
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K+WWK +V+YQI SF DSN DGIGDLRG II K+DYLKELG++
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG---------------IISKLDYLKELGID 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+WL+P Y PN D GYDIS++ ++ +FGTMED+DEL+ +H +
Sbjct: 47 VIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERN 92
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-31
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+M + E + E+ Y G Q H+ ++ K+ + L+ +
Sbjct: 250 IMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLT 309
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDE 904
+ K+L W+S H R+ +R+ D + + + ++ GT + G+E
Sbjct: 310 KWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEE 369
Query: 905 LGME-SPILRYEDQRDPEGYIFGKDNYLKVC------------------RDGSRVPFQWN 945
+GM ++ RD E + Y + RD +R P QW+
Sbjct: 370 IGMTNVRFESIDEYRDIET----LNMYKEKVMERGEDIEKVMQSIYIKGRDNARTPMQWD 425
Query: 946 DQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS 1005
DQ +AGF+ + W+ V+PNY +N + + K S + YK L LR + V G Y +
Sbjct: 426 DQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVYGSYDLI 485
Query: 1006 TPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGG 1046
NN +F RT G + +I N + +L + I
Sbjct: 486 LENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISYSE 527
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 5e-15
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNWK 774
H MK++++ V NH+S++H+WFI+S + K + Y +YY+W+ GK G PNNW
Sbjct: 89 HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRP---GKEGKEPNNWG 141
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+K+WWK +V+YQI SF DSN DGIGDLRG + + YL+ LG+D
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG--IISKLDYLK-ELGID 46
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
WWK+ V YQ+ SFKD+N DGIGD +G + EK+DYLK LG++
Sbjct: 3 GAPWWKSAVFYQVYPRSFKDTNGDGIGDFKG---------------LTEKLDYLKGLGID 47
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+ P Y+ PN D GYDIS++ EV K++GTMEDFD L+ + +G
Sbjct: 48 AIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-32
Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 29/277 (10%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATSNAKDLENVVNA 851
+ E + L +V + + + + + D ++
Sbjct: 249 AVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDK 308
Query: 852 YLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAGDE 904
W+++ +G H R + + D A+ +TL GT F GDE
Sbjct: 309 VDAIAGEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDE 368
Query: 905 LGME-SPILRYEDQRDPEG----------YIFGKDNYLKVC----RDGSRVPFQWNDQEN 949
LGM P +D D E + L RD +R PFQW+D N
Sbjct: 369 LGMTNYPFKTLQDFDDIEVKGFFQDYVETGKATAEELLTNVALTSRDNARTPFQWDDSAN 428
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
AGF+ K WL V+PNY +NA E S YS Y++L ++R + A+ G Y+ P+N
Sbjct: 429 AGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALSTGSYRDIDPSN 488
Query: 1010 -YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
V+ TR++ + +++N + + L D +
Sbjct: 489 ADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIA 525
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 3e-15
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774
+ GM+++V+ V NHSS++H+WF S A K +PY +YY W+D GK G PNN+
Sbjct: 90 KKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRD---GKDGHEPNNYP 142
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
WWK+ V YQ+ SFKD+N DGIGD +G + ++ YL+ LG+D
Sbjct: 3 GAPWWKSAVFYQVYPRSFKDTNGDGIGDFKG--LTEKLDYLK-GLGID 47
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 5e-40
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 15/106 (14%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+ +WWK YQI SFKDSN+DG GD++G I K++Y+KELG +
Sbjct: 11 EPKWWKEATFYQIYPASFKDSNDDGWGDMKG---------------IASKLEYIKELGAD 55
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W++PFY P D+GYDI+N+ +V +GT ED L++ H G
Sbjct: 56 AIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-24
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 40/288 (13%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDT------QGTHLSVNYEIMNKFGATS-NAKDLENVVN 850
+M + E S E Y +H V + ++ KD + +
Sbjct: 272 IMTVGEMQHASDETKRLYTSASRHELSELFNFSHTDVGTSPLFRYNLVPFELKDWKIALA 331
Query: 851 AYLKSLPSGK-WSSWMVGGHSITRIATRYSPDLVD-------AMNMLTLLLPGTAVTFAG 902
+ + WS+ + H R TR+ D +++L L GT + G
Sbjct: 332 ELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQG 391
Query: 903 DELGME----SPILRYED--------------QRDPEGYIFGKDNYLKVCRDGSRVPFQW 944
ELG P+ +YED + E + + RD +R P QW
Sbjct: 392 QELGQINFKNWPVEKYEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQW 451
Query: 945 NDQE-NAGFSK--AKSWLPVHPNYWT-LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM- 999
+ +E NAGFS AK W ++ ++ +N + E K S + +K+ R + +
Sbjct: 452 SREEPNAGFSGPSAKPWFYLNDSFREGINVEDEIKDPNSVLNFWKEALKFRKAHKDITVY 511
Query: 1000 -GDYKISTPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
D++ +N +F T+ + +++ +N +S + + +
Sbjct: 512 GYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDDSSF 559
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-14
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGK---PGTPPNNWK 774
H+ GMK + + V NH S++H+WF +S + K +P +++ W+ PPNNWK
Sbjct: 98 HKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWK 156
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ +WWK YQI SFKDSN+DG GD++G + + Y++ LG D
Sbjct: 11 EPKWWKEATFYQIYPASFKDSNDDGWGDMKG--IASKLEYIK-ELGAD 55
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403
+ +WL GVDGF +D + + P + + + YT++ P +E
Sbjct: 200 AVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDK------NSTWQSSDPYTLNGPRIHE 253
Query: 404 ML 405
Sbjct: 254 FH 255
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-38
Identities = 104/531 (19%), Positives = 185/531 (34%), Gaps = 123/531 (23%)
Query: 555 EWWKNTVIYQILVPSFK--DSNNDGIGDLRGKNVRKRY-----LELTLGLGIIEKIDYLK 607
W+ TV YQI + SF D NND ++ R+ L GI++ ID+L+
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLA-----GIMKHIDHLE 275
Query: 608 ELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKIS---- 663
+LGVET++LTP +S + YD ++ + K GTMEDF++LV+++HS+ I
Sbjct: 276 DLGVETIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSRK---IKIVLD 331
Query: 664 -------------QKQTKNRSHQLYCHMYMYAICADK--FAIHSVYLNPVYAGSGNQNWR 708
K + + Y M+ + K + Y++ S
Sbjct: 332 ITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKL 391
Query: 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKH--DWFIKSAQKIDPYTNYYVW-KDGLNG- 764
+N E + ++ +F NH N D+FI + W G++G
Sbjct: 392 DYFRNNKPFYEAFFNIWLMAKF--NH-DNPRTVDYFIDITKF---------WIDKGIDGF 439
Query: 765 ----KPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGD 820
G + K + + D +++ E + + +
Sbjct: 440 RIDVAMGIHYSWMKQYY---EYIKNTYPDF--------LVLGELAENPRIYMDYFDSAMN 488
Query: 821 TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRY 878
+ I + + NV P K S +G H + RI +
Sbjct: 489 YYLRKAILELLIYKRIDLNEFISRINNVYAYI----PHYKALSLYNMLGSHDVPRIKSMV 544
Query: 879 S-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDG 937
L+ M +L LPG+ V + GDE+G+ E RDP
Sbjct: 545 QNNKLLKLMYVLIFALPGSPVIYYGDEIGL-------EGGRDP----------------D 581
Query: 938 SRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997
+R P W+ Y K L + + ++
Sbjct: 582 NRRPMIWD---------------------------RGNWDLELYEHIKKLIRIYKSCRSM 614
Query: 998 RMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDV 1048
R G + + + + + R + + ++N++S+ +VDL + D+
Sbjct: 615 RHGYFLVENLGSNLLFIKRWINNEEIIFLLNVSSKDISVDLKKLGKYSFDI 665
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 8e-38
Identities = 80/513 (15%), Positives = 164/513 (31%), Gaps = 84/513 (16%)
Query: 554 KEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKEL 609
+ + IYQI+ F + + ND + +R + R+ G G I+ +DY+ L
Sbjct: 101 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGL 160
Query: 610 GVETLWLTPFYSGPNGDI---GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666
G LW TP GY ++H + +G+ EDF L +G + Q
Sbjct: 161 GFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG-MGLIQDV 219
Query: 667 TKNRSHQLYCHMYMYAICA-DKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMK 725
+ H H +M + D ++ + Q+ A + E+ ++
Sbjct: 220 VLS--HIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADS-ENFTKGWFVE 276
Query: 726 ILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG-----KPGTPPNNWKHINITS 780
+ + N ++ ++ +++ GL+G + +
Sbjct: 277 GMPDL--NQTNPLVANYLIQNNI------WWIEYAGLSGLRIDTYGYSDGAFLTEY---T 325
Query: 781 REVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQ----GTHL-SV-NYEIMN 834
R +M + ++ + +S + VA + G +HL S+ ++ +++
Sbjct: 326 RRLMAEYPRLN--------MVGQEWSTRVPVVA-RWQRGKANFDGYTSHLPSLMDFPLVD 376
Query: 835 K----FGATSNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNM 888
T L V + + + G H + R+ + D
Sbjct: 377 AMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMN 436
Query: 889 LTLLL--PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWND 946
L L+ P ++GDE+ M S + + + D R P W
Sbjct: 437 LVFLMTMPRIPQFYSGDEILMTSTV---KGRDDAS------------YR--RDFPGGWAG 479
Query: 947 QENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST 1006
+ FS A + + + + L R + G
Sbjct: 480 DKANAFSGAGLT----------------SQQRAAQDLVRKLANWRKNQPVIHNGRLMHFG 523
Query: 1007 PNNYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039
P ++ R + + +N N + T+ +
Sbjct: 524 PEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTA 556
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-37
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 16/120 (13%)
Query: 539 LSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLG 598
+ + L++ E + + YQ+L+ SF DS+ DG GDL G
Sbjct: 17 VEGQWTALTASPDTWDETKRADISYQLLLYSFADSDGDGYGDLN---------------G 61
Query: 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ +K+DYL +LGV+ LWL+P + + GYD++++T+V GT DFD LV H++G
Sbjct: 62 VTQKLDYLNQLGVKALWLSPIHPCMS-YHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG 120
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 51/273 (18%), Positives = 83/273 (30%), Gaps = 40/273 (14%)
Query: 781 REVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEI---MNKFG 837
E M + +I E S +KVA YY G S Y + +N
Sbjct: 387 YEDMNAYYKQKGHTDDF-YMIGEVLSE-YDKVAPYYK-GLPALFEFSFWYRLEWGINNST 443
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDA--MNMLTLLLPG 895
AKD+ + Y S + + H R +++ + L G
Sbjct: 444 GCYFAKDILSYQQKYAN-YRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSAG 502
Query: 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955
+ G+ELG+ G + R P W D ++
Sbjct: 503 HPYIYYGEELGLYGTK--------DNG------------DEYVRSPMLWGDSYTTNYTDK 542
Query: 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNY----- 1010
V N T+ Q S ++Y LT LR T A+ G+ + N
Sbjct: 543 T-DATVSKNVKTVADQQADTH--SLLNIYFSLTRLRNTYPALAEGNMTKHSVYNESQEKD 599
Query: 1011 ---VFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+ T+ + + +I N + L+D
Sbjct: 600 YKPIAAWYMTKDNEKLLVIHNFGGTAMQLPLTD 632
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-13
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLN---GKPGTPPNNWK 774
H G+KI +++V NH+ H WF +++ PY NYY + + +
Sbjct: 117 HNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQE 175
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 9e-12
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 10 LSTASSVLSSVRCNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLG 67
+ + L++ E + + YQ+L+ SF DS+ DG GDL G V ++ YL LG
Sbjct: 17 VEGQWTALTASPDTWDETKRADISYQLLLYSFADSDGDGYGDLNG--VTQKLDYLN-QLG 73
Query: 68 LD 69
+
Sbjct: 74 VK 75
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 720 HRAGMKILVEFVPNH-----SSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNW 773
++ V+F +SN W + + KD G P N
Sbjct: 250 GNNIYELTVDFESTWGLLIRTSNASFWPSGTKYGASSSSEKLALNKDFKLTNAG-NPANI 308
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-28
Identities = 97/556 (17%), Positives = 169/556 (30%), Gaps = 133/556 (23%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGL--------------- 597
+W KN V+YQI F + + ND N +
Sbjct: 128 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 187
Query: 598 ----GIIEKIDYLKE-LGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELV 651
GI +K+ Y+K+ LG L+L P F + N YD ++ V FG L+
Sbjct: 188 GDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNH--KYDTQDYMAVDPAFGDNSTLQTLI 245
Query: 652 KLVHSKGKQ---KISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708
+HS + N H H + F ++ + + S + W
Sbjct: 246 NDIHSTANGPKGYLILDGVFN--HTGDSHPW--------FDKYNNFSSQGAYESQSSPWY 295
Query: 709 AGNQNRAESMEHR--AGMKILVEFVPNHSSNKHDWFIKSAQK------IDPYTN------ 754
+ G L + +S + I + ++P +
Sbjct: 296 NYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRL 355
Query: 755 ---YYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEK 811
YV +G NG T W V + II E + +
Sbjct: 356 DAAQYVDANGNNGSDVTNHQIWSEFR---NAVKGVNSNAA--------IIGEYWGNANPW 404
Query: 812 VAKYYGTGDT----QGTHLSVNYEIMNKFGATS----NAKDLENVVNAYLKSLPSGKWSS 863
A D G V+ I K + + ++ + + P+ S
Sbjct: 405 TA-QGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQS 463
Query: 864 WM--VGGHSITRIATRYSPDLVDAMNM---LTLLLPGTAVTFAGDELGMESPILRYEDQR 918
M + H ITR ATR D + + + GT + GDE GM+
Sbjct: 464 MMNFLSNHDITRFATRSGGD-LWKTYLALIFQMTYVGTPTIYYGDEYGMQG--------- 513
Query: 919 DPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKP 978
G D +R F W+ +
Sbjct: 514 -------GAD-------PDNRRSFDWS---------------------------QATPSN 532
Query: 979 SHYSVYKDLTTLRATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETV 1036
S ++ + L T+R A+R G + I+ N ++ R + + +++N +S + TV
Sbjct: 533 SAVALTQKLITIRNQYPALRTGSFMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTV 592
Query: 1037 DLSDCIENGGDVAIFT 1052
++ + + + T
Sbjct: 593 NVPVWQLSMPNGSTVT 608
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGV 611
+ + +N +IY + V ++ ++ G+ G + + +K+LG
Sbjct: 5 DTQTQLRNEMIYSVFVRNYSEA-----GNFAG---------------VTADLQRIKDLGT 44
Query: 612 ETLWLTPFYSGPNGDI------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ LWL P + Y I ++ + ++GT+ DF L H G
Sbjct: 45 DILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 41/365 (11%), Positives = 95/365 (26%), Gaps = 109/365 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHI--- 776
H GMK++++ V NH+S + ++ +G+ +W +
Sbjct: 94 HELGMKVMLDIVYNHTSPDSVLA-------TEHPEWFYHDA--DGQLTNKVGDWSDVKDL 144
Query: 777 NITSREVMRSQKDV------------------------------VQSFPLILMIITEAYS 806
+ E+ + Q D V + + + E+
Sbjct: 145 DYGHHELWQYQIDTLLYWSQFVDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAG 204
Query: 807 PSLEKVAKYYGTGDTQGTHLSV------NYEIMNK----FGATSNAKDLENVVNAYLKSL 856
+ + G + L +Y++ + S + +++ +
Sbjct: 205 SGFIEELRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATF 264
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLL--LPGTAVTFAGDELGMESPILRY 914
P + H R+ + +A+N LT + G + + G E E
Sbjct: 265 PGNYVKMRFLENHDNARMMSLMHSK-AEAVNNLTWIFMQRGIPLIYNGQEFLAE------ 317
Query: 915 EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
RD + +
Sbjct: 318 ------HQPSLF-------DRD----TMVADRHGDV------------------------ 336
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034
+ + L T++ +R DY+++ + +T ++ I L +
Sbjct: 337 ------TPLIQKLVTIKQLP-LLRAADYQLAVVEEGIVKITYRAAGEALTAWIPLKGQVT 389
Query: 1035 TVDLS 1039
V
Sbjct: 390 AVATK 394
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 23 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKR--YLELTLGLD 69
+ + +N +IY + V ++ ++ G+ G V ++ LG D
Sbjct: 5 DTQTQLRNEMIYSVFVRNYSEA-----GNFAG--VTADLQRIK-DLGTD 45
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGI-------GDLRGKNVRKRYLELTLGLGIIEKIDYLKE 608
W++ YQI F + G + + TL G+ EK+ YL +
Sbjct: 3 WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTL-WGVAEKLPYLLD 61
Query: 609 LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGVE ++L P ++ + Y ++ +V G E L+++ H+ G
Sbjct: 62 LGVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG 110
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 58/389 (14%), Positives = 99/389 (25%), Gaps = 134/389 (34%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKDGLNGKPGTPPN-----N 772
H G++++++ V NH+ F + + PY ++Y K PN
Sbjct: 107 HAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWG 166
Query: 773 WKH---INITSREVMR-----SQK-----------DVVQSFPLI---------------- 797
+ + + V ++ DV P
Sbjct: 167 NPELPKLKVETPAVREYLLAVAEHWIRFGVDGWRLDVPNEIPDPTFWREFRQRVKGANPE 226
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-GATSNAKDLENVVNAYLKSL 856
I+ E + A ++ GD +NY + G ++
Sbjct: 227 AYIVGEIWEE-----ADFWLQGD--MFDAVMNYPLARAVLGFVGGEALDRDLAAQTGLGR 279
Query: 857 PSGKWSSWMVGGHSITRIATRYSPDLVDA-MNMLT------------------------- 890
+ H + + RY P++V A MN+LT
Sbjct: 280 IEPLQALAFS--HRLEDLFGRYRPEVVRAQMNLLTSHDTPRLLSLMRGSVERARLALALL 337
Query: 891 LLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWND-QEN 949
LLPG + G+E+GM G GKD +R W + +
Sbjct: 338 FLLPGNPTVYYGEEVGM-------------AG---GKD-------PENRGGMVWEEARWQ 374
Query: 950 AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNN 1009
K L LR A+R Y +
Sbjct: 375 KDL----------------------------RETVKRLARLRKEHPALRTAPYLRIYAQD 406
Query: 1010 YVFILTRTEGSTSVYLIINLNSRTETVDL 1038
R ++N + D
Sbjct: 407 GHLAFAR----GPYLAVVNASPHPFRQDF 431
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
+W K +V+Y L + N+ G G +V T ++ + ++K LG + +
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF-FKMMLLLPFVKSLGADAI 137
Query: 615 WLTPFY-------SGPNGDIGYDISN--------HTEVGKDFGTMEDFDELVKLVHSKG 658
+L P G Y + N H + + F E+F V+ H G
Sbjct: 138 YLLPVSRMSDLFKKGDAPS-PYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 24/242 (9%), Positives = 52/242 (21%), Gaps = 45/242 (18%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
++I E +K +K G G++ +
Sbjct: 409 FVMIAEELDMEKDKASKEAGYDVI--------------LGSSWYFAGRVEEIGKLPDIAE 454
Query: 858 SGKWSSWMVGG-HSITRIATRYSPDLVDAMN--MLTLLLPGTAVTFAGDELGMESPILRY 914
RIATR + + + L G E+G + P+
Sbjct: 455 ELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLG 514
Query: 915 EDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974
D + P + A F
Sbjct: 515 LDTDPNLRKVL--------------SPTDEFFGKLAFFDHY--------------VLHWD 546
Query: 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034
+ K L +R + + + + + + + + N+ +
Sbjct: 547 SPDRGVLNFIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEKNGQKIVIAANVGKEPK 606
Query: 1035 TV 1036
+
Sbjct: 607 EI 608
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
H G++++++F+P ++ D + + +++ W TPP
Sbjct: 192 HILGIRVILDFIPRTAARDSDLIRE-------HPDWFYWIKVEELADYTPPRAE 238
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 8e-05
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL 66
+W K +V+Y L + N+ G G +V T
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF 119
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGL-------GIIEKIDYLK 607
+W K+ V YQI F S L+ TL GI+E +DY++
Sbjct: 7 DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQ 66
Query: 608 ELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LG+ ++ TP F S N Y ++ +V G E F EL+ H +
Sbjct: 67 NLGINAIYFTPIFQSASNH--RYHTHDYYQVDPMLGGNEAFKELLDAAHQRN 116
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 55/203 (27%)
Query: 841 NAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPGT 896
A + + L+ P + + + H R+ T D+ LL PG
Sbjct: 292 FAAEYATKIQEVLQLYPWEIQLTQLNLLASHDTARLMTIAGGDIASVELSTLLLLTFPGA 351
Query: 897 AVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAK 956
+ GDE+G+ G G D SR F N
Sbjct: 352 PSIYYGDEVGLP-------------G---GID-------PDSRRGFPLEANWNQEI---- 384
Query: 957 SWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTR 1016
++ ++ L T+R T A+R GDY++ +++ R
Sbjct: 385 ------------------------FNTHRQLITIRQTYPALRTGDYQVLYAQGQLYLFAR 420
Query: 1017 TEGSTSVYLIINLNSRTETVDLS 1039
T G+ + + IN + + T ++
Sbjct: 421 TLGTEELIIAINAGTSSATANVD 443
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKD-GLNGKPGTPPNNW 773
H+ +K++++ V NHSS +F + P+ N++ + L+ G P N+
Sbjct: 113 HQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANY 169
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-22
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLR-GKNVRKRYLELTLG--LGIIEKIDYLKEL 609
EW K VIYQI F + + ND G + K+ R R+ G G+I+++ YL+EL
Sbjct: 126 EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEEL 185
Query: 610 GVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
GV L+ TP F S + YD +++ + FG + F LV H +G
Sbjct: 186 GVTALYFTPIFASPSHH--KYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 58/384 (15%), Positives = 103/384 (26%), Gaps = 119/384 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGKPGTPPNN---WK 774
HR G+KI+++ V NH+ ++ F QK Y +++ +D + N
Sbjct: 230 HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDF-PVSKTSRTNYETFAV 288
Query: 775 HI------NITSREVMR-----SQK-----------DVVQSFPLILM------------- 799
+ + EV ++ DV
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPD 348
Query: 800 --IITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYEIMNKF-----GATSNAKDLENVVN 850
I+ E + + +G G SV NY +A+ + +
Sbjct: 349 ALIVGEIWHDA---------SGWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELT 399
Query: 851 AYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLLL---PGTAVTFAGDEL 905
P + H R T + + L GT + + GDE+
Sbjct: 400 RARMLYPEQAAQGLWNLLDSHDTERFLTSCGGN-EAKFRLAVLFQMTYLGTPLIYYGDEI 458
Query: 906 GMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWN-DQENAGFSKAKSWLPVHPN 964
GM D P W ++N G
Sbjct: 459 GMAG----------------ATD-------PDCLRPMIWEEKEQNRGL------------ 483
Query: 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI--STPNNYVFILTRTEGSTS 1022
+ YK+L LR ++ G+ + + ++ RT
Sbjct: 484 ----------------FEFYKELIRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQH 527
Query: 1023 VYLIINLNSRTETVDLSDCIENGG 1046
V +++N +TV L G
Sbjct: 528 VGVVLNNRGEKQTVLLQVPESGGK 551
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-21
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKELG 610
W K+ + YQI F + + ND G L + G G+I+ +D+L +LG
Sbjct: 126 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLG 185
Query: 611 VETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
V ++ TP F + N YD ++ ++ FG + +LV L H +G
Sbjct: 186 VNAVYFTPLFKATTNH--KYDTEDYFQIDPQFGDKDTLKKLVDLCHERG 232
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-11
Identities = 59/386 (15%), Positives = 110/386 (28%), Gaps = 136/386 (35%)
Query: 720 HRAGMKILVEFVPNHSSNKH----------------DWFIKSAQKIDPY---TNYYVWK- 759
H G+++L++ V NHS DWF + ++ Y +
Sbjct: 229 HERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAF 288
Query: 760 -------------------------------DG--LNGKPGTPPNNWKHINITSREVMRS 786
DG L+ W+ R V ++
Sbjct: 289 EPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFR---RVVKQA 345
Query: 787 QKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYE----IMNKF-GAT 839
D I+ E + S + +G +V NY +++ F
Sbjct: 346 NPDAY--------ILGEVWHES---------SIWLEGDQFDAVMNYPFTNAVLDFFIHQI 388
Query: 840 SNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPG 895
++A+ ++ L P + H R+ T+ D + G
Sbjct: 389 ADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFG 448
Query: 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955
T + GDE+G++ G D G R +W+
Sbjct: 449 TPCIYYGDEVGLDG----------------GHD-------PGCRKCMEWD---------- 475
Query: 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP--NNYVFI 1013
E K ++ Y+ + LR A+R G +K T N+
Sbjct: 476 -----------------ETKHDKDLFAFYQTVIRLRQAHAALRTGTFKFLTAEKNSRQIA 518
Query: 1014 LTRTEGSTSVYLIINLNSRTETVDLS 1039
R + ++ +++N + T+ L
Sbjct: 519 YLREDDQDTILVVMNNDKAGHTLTLP 544
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-21
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKELG 610
+W K+TV YQI F + N G + G GII+ +DYL +LG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 611 VETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+ ++LTP F S N YD +++ EV FG E L+ H KG
Sbjct: 190 ITGIYLTPIFRSPSNH--KYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 59/388 (15%), Positives = 105/388 (27%), Gaps = 115/388 (29%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---- 775
H G++++++ V NH + F + K + Y W T P
Sbjct: 233 HEKGIRVMLDAVFNHCGYEFAPF-QDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAF 291
Query: 776 ------INITSREVMR-----SQK------------DVVQSFPLILM------------- 799
+N + EV R + DV
Sbjct: 292 VPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPD 351
Query: 800 --IITEAYSPSLEKVAKYYGTGDTQGTHL-SV-NYEIMNKF-----GATSNAKDLENVVN 850
I+ E + + +G +V NY + +A+ N +
Sbjct: 352 VYILGEIWHDA---------MPWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMM 402
Query: 851 AYLKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNMLTLL--LPGTAVTFAGDELG 906
L S P+ + +G H +RI T D+ + G+ + GDE+G
Sbjct: 403 HVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIG 462
Query: 907 MESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYW 966
M G D R W+
Sbjct: 463 MTG----------------GND-------PECRKCMVWD--------------------- 478
Query: 967 TLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI--STPNNYVFILTRTEGSTSVY 1024
+ + K L LR ++R G+ + I +T+G +V
Sbjct: 479 ------PMQQNKELHQHVKQLIALRKQYRSLRRGEISFLHADDEMNYLIYKKTDGDETVL 532
Query: 1025 LIINLNSRTETVDLSDCIENGGDVAIFT 1052
+IIN + + + + V + T
Sbjct: 533 VIINRSDQKADIPIPLDARGTWLVNLLT 560
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 6e-21
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 26/113 (23%)
Query: 550 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLK 607
R + +W + V Y F G L+G + E++DYL+
Sbjct: 84 RLLRPDWLQRPEMVGYVAYTDRF-------AGTLKG---------------VEERLDYLE 121
Query: 608 ELGVETLWLTPFYSG--PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV+ L L P D GY + ++ V D GTM+D L + + +G
Sbjct: 122 GLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRG 174
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVW---KDGLNGKPGTPPNNW 773
G+ ++++ V NH + +H W K+ Y Y+ + G + T P +
Sbjct: 171 RGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIF 227
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 19/182 (10%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 872 TRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931
+ + ++ + L G + + GDEL + ++Y
Sbjct: 473 DPGRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALL-------------------NDYA 513
Query: 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH-YSVYKDLTTL 990
+W + ++ A+ E + + + L +
Sbjct: 514 FEDVPEHAPDNRWVHRPQMDWALAERVR------------QEPSSPAGRVNTGLRHLLRV 561
Query: 991 RATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDV 1048
R + + + +P++ +L R + + N + T + + GD
Sbjct: 562 RRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGMVQVYNFSEETVMLPSHVLRDVLGDH 621
Query: 1049 AI 1050
Sbjct: 622 VQ 623
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 2e-20
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
W+ + + + G L+G + E++ YL+ELGV
Sbjct: 82 HAGWFGQPHML-----GYSAYADRFAGTLQG---------------VAERVPYLQELGVR 121
Query: 613 TLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
L L PF G D G+ +S++ +V G+ +D L + G
Sbjct: 122 YLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAG 169
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 5e-11
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNW 773
AG+ + +FV NH+++ H W + Y +YY T P+ +
Sbjct: 166 REAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFA-----DRTVPDRY 214
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 44/177 (24%)
Query: 875 ATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934
A + D + + + L +PG + + GDEL M ++
Sbjct: 466 ALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMV-------------------NDPGYRD 506
Query: 935 RDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH----YSVYKDLTTL 990
+ +W +H A++ S Y + L
Sbjct: 507 DPHRQHEGRW----------------LHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQ 550
Query: 991 RATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENG 1045
RA GA+ I+ + VF LTR + S + N + + V+L+ +G
Sbjct: 551 RAALGALAADQALASIALNDPRVFALTRGD---SFIALHNFSDQLLDVELAAIGVDG 604
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 2e-20
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 555 EWWKNTVIYQILVPSFKD---SNNDGIGDLRGKNVRKRYLELTLG---LGIIEKIDYLKE 608
K VIYQI++ F D +NN+ + K ++ G G+ +K+ YLK+
Sbjct: 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQ 63
Query: 609 LGVETLWLTPFYSGPNGDI--------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
LGV T+WL+P + GY + ++ + FG FD LV H G
Sbjct: 64 LGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNG 121
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 54/382 (14%), Positives = 100/382 (26%), Gaps = 120/382 (31%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQK--------------IDPYTNYYVWKDGLNGK 765
H+ G+K++V+FVPNHS+ A+ D Y+ ++
Sbjct: 118 HQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNW 177
Query: 766 PGTPPNNWKH-----------INITSREVMR------------------------SQKDV 790
WK+ ++ + + +
Sbjct: 178 DDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGF 237
Query: 791 VQSFPLILM------IITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GA 838
+S L ++ E Y + ++V ++++
Sbjct: 238 SKSLADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTF 297
Query: 839 TSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLLP 894
T DL N+VN + ++ H ++R + S + L
Sbjct: 298 TQTMYDLNNMVNQTGNEYK---YKENLITFIDNHDMSRFLSVNSNKANLHQALAFILTSR 354
Query: 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954
GT + G E M G D Y +R D
Sbjct: 355 GTPSIYYGTEQYMAG----------------GNDPY-------NRGMMPAFDTTTTA--- 388
Query: 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFIL 1014
+ L LR + A++ G NN V+I
Sbjct: 389 --------------------------FKEVSTLAGLRRNNAAIQYGTTTQRWINNDVYIY 422
Query: 1015 TRTEGSTSVYLIINLNSRTETV 1036
R + V + IN N+++
Sbjct: 423 ERKFFNDVVLVAINRNTQSSYS 444
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 9e-20
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 26/113 (23%)
Query: 550 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLK 607
R N +W V V F GDL+G + +KI Y +
Sbjct: 86 RENNPDWILSNKQVGGVCYVDLFA-------GDLKG---------------LKDKIPYFQ 123
Query: 608 ELGVETLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
ELG+ L L P + P G D GY +S++ +V GT+ D E++ +H G
Sbjct: 124 ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTN-YYVWKDGLNGKPGTPPNNWKHI 776
H AG+ +V+F+ NH+SN+H+W + A + N YY++ D P + I
Sbjct: 173 HEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRM--PDQYDRTLREI 228
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 21/159 (13%), Positives = 41/159 (25%), Gaps = 39/159 (24%)
Query: 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQW 944
+ + L G + + GDE+G W
Sbjct: 470 LLYSIALSTGGLPLIYLGDEVGT-------------------------------LNDDDW 498
Query: 945 NDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH--YSVYKDLTTLRATSGAVRMGDY 1002
+ N W L AQ + + Y + + +R ++ G
Sbjct: 499 SQDSNKSDDSR--WAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGGRL 556
Query: 1003 -KISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040
+T N ++ R ++ N + +TV
Sbjct: 557 VTFNTNNKHIIGYIRNN---ALLAFGNFSEYPQTVTAHT 592
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
K Y++ F + I ++DY ELGV L+L+
Sbjct: 2 KLLSTYRLQPMKFSE--------------------------IRNRLDYFVELGVTHLYLS 35
Query: 618 PFY-SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
P + P GYD+ ++ + + G E++ L+ SKG
Sbjct: 36 PVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKG 77
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ----KIDPYTNYYVWKDGLNGKPGTPPNNW 773
G+ I+ + VPNH + H + + Y NY+ + + + P
Sbjct: 74 KSKGLGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEE--EEKIRIPILG 129
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-19
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
W++ IY +L F ++ + ++Y T GII+K+DY++ +G
Sbjct: 4 ADWRSQSIYFLLTDRFARTDGSTTATCNTA----DQKYCGGTWQ-GIIDKLDYIQGMGFT 58
Query: 613 TLWLTPFYSGPNGDI-------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+W+TP + GY + + +++GT +D L +H +G
Sbjct: 59 AIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERG 111
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 52/375 (13%), Positives = 93/375 (24%), Gaps = 115/375 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP---------YTNYYVWKDGLNGKPGTPP 770
H GM ++V+ V NH P + ++D +
Sbjct: 108 HERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLG 167
Query: 771 NNWKH---INITSREVMR----SQK-------------DVVQSFPLILM----------I 800
+N ++ T V D V+
Sbjct: 168 DNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYC 227
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GATSNAKDLENVVNAYLK 854
I E Y D V NY I + + DL N++N
Sbjct: 228 IGEVLDGDPAYTCPYQNVMD------GVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKS 281
Query: 855 SLPSGKWSSWMV---GGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGMES 909
P S+ + H R A+ Y+ D+ A N+ ++ G + +AG E
Sbjct: 282 DCP---DSTLLGTFVENHDNPRFAS-YTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAG 337
Query: 910 PILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLN 969
G D +R +
Sbjct: 338 ----------------GND-------PANREATWLS------------------------ 350
Query: 970 AQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK----ISTPNNYVFILTRT-EGSTSVY 1024
T Y + +R + + G ++ + + +GS V
Sbjct: 351 ---GYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVT 407
Query: 1025 LIINLNSRTETVDLS 1039
++ N + ++ LS
Sbjct: 408 ILSNKGASGDSYTLS 422
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 6e-19
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 25/126 (19%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRY------LELTLGLGIIEKID 604
K + + V+YQI+V F D N N+ G L + GII KI+
Sbjct: 5 NKVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQ-----GIINKIN 59
Query: 605 --YLKELGVETLWLTPFYSGPNGDI----------GYDISNHTEVGKDFGTMEDFDELVK 652
YL ++GV +W++ + GY + + FGT+ DF LV
Sbjct: 60 DGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVD 119
Query: 653 LVHSKG 658
H+KG
Sbjct: 120 AAHAKG 125
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 6e-11
Identities = 53/386 (13%), Positives = 95/386 (24%), Gaps = 131/386 (33%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFI---------KSAQKIDPYTNYYVWKDGLNGKPGTPP 770
H G+K++++F PNH+S + + + YTN NG
Sbjct: 122 HAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSS 181
Query: 771 NNW-------------------------------------------KHINITS----REV 783
KH+ +
Sbjct: 182 LEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWIDMGIDGIRMDAVKHMPFGWQKSLMDE 241
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ + + V E + E A + + G S+ ++ K
Sbjct: 242 IDNYRPVF--------TFGEWFLSENEVDANNHYFANESGM--SLLDFRFGQKLRQVLRN 291
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLL 893
+ N ++ + V H + R P VD + L
Sbjct: 292 NSDNWYGFNQMIQDTASAYD---EVLDQVTFIDNHDMDRFMIDGGDPRKVDMALAVLLTS 348
Query: 894 PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953
G + G E M DP +N R ++
Sbjct: 349 RGVPNIYYGTEQYMTG-------NGDP-------NN---------RKMMSSFNKNT---- 381
Query: 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFI 1013
Y V + L++LR + A+ GD + N V++
Sbjct: 382 -------------RA------------YQVIQKLSSLRRNNPALAYGDTEQRWINGDVYV 416
Query: 1014 LTRTEGSTSVYLIINLNSRTETVDLS 1039
R G V + +N +S +
Sbjct: 417 YERQFGKDVVLVAVNRSSSSNYSITG 442
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 7e-19
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLR---GKNVRKRY---LELTLGLGIIEKID 604
K+ + VIYQI F D N N+ G N+R + GII KI+
Sbjct: 8 NKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQ-----GIINKIN 62
Query: 605 --YLKELGVETLWLTPFYSGPNGDI-----------GYDISNHTEVGKDFGTMEDFDELV 651
YL +GV +W++ I GY + + +GT+ DF L+
Sbjct: 63 DGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLI 122
Query: 652 KLVHSKG 658
H+K
Sbjct: 123 AAAHAKN 129
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 6e-10
Identities = 50/378 (13%), Positives = 85/378 (22%), Gaps = 131/378 (34%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPY-------------TNYYVWKDGLNGKP 766
H +K++++F PNH+S A+ Y N + G +
Sbjct: 126 HAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFST 185
Query: 767 GTPPNNW---------------------------------------KHINITS----REV 783
KH+
Sbjct: 186 TENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMNAVKHMPFGWQKSFMAA 245
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ + K V + + E + + + G S+ ++ K
Sbjct: 246 VNNYKPVF--------TFGQWFLGVNEVSPENHKFANESGM--SLLDFRFAQKVRQVFRD 295
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYS-PDLVDAMNMLTLLL 893
T N L+ ++ V H + R + ++ TL
Sbjct: 296 NTDNMYGLKAMLEGSAADYA---QVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTS 352
Query: 894 PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953
G + G E M G D +R
Sbjct: 353 RGVPAIYYGTEQYMSG----------------GTDPD-------NRARIPSFSTSTT--- 386
Query: 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFI 1013
Y V + L LR + A+ G + NN V I
Sbjct: 387 --------------------------AYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLI 420
Query: 1014 LTRTEGSTSVYLIINLNS 1031
R GS + +N N
Sbjct: 421 YERKFGSNVAVVAVNRNL 438
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 2e-18
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 598 GIIEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHS 656
+I+ + Y +LGV L+L+P + P + GYD+ +H+ + + G +++ L++ H+
Sbjct: 18 DVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHT 77
Query: 657 KG 658
G
Sbjct: 78 IG 79
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFI-KSAQKIDPYTNYYVWKDGLNGKPG----TPPNNWK 774
H G+ I+ + VPNH + + + + YY + D +
Sbjct: 76 HTIGLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLD 135
Query: 775 HI 776
+
Sbjct: 136 TV 137
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 4e-18
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 553 QKEWWKNTVIYQILVPSFKDSN--NDGIGDLR---GKNVRKRY---LELTLGLGIIEKID 604
+ VIYQI+ F D N N+ GDL +++K + + GII KI+
Sbjct: 8 NVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQ-----GIINKIN 62
Query: 605 --YLKELGVETLWLTPFYSGPNGDI------------GYDISNHTEVGKDFGTMEDFDEL 650
YL +GV +W+ + GY + FG+ DF L
Sbjct: 63 DGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNL 122
Query: 651 VKLVHSKG 658
+ H+
Sbjct: 123 INTAHAHN 130
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 56/385 (14%), Positives = 95/385 (24%), Gaps = 130/385 (33%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPY-------------TNYYVWKDGLNGKP 766
H +K++++F PNH+S + A+ Y Y+ G +
Sbjct: 127 HAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSS 186
Query: 767 GTPPNNW---------------------------------------KHINITS----REV 783
KH+ +
Sbjct: 187 YEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMDS 246
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----G 837
+ S + V E + + E + G S+ ++ K
Sbjct: 247 ILSYRPVF--------TFGEWFLGTNEIDVNNTYFANESGM--SLLDFRFSQKVRQVFRD 296
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMV---GGHSITRIATRYSPDLVDAMNMLTLLLP 894
T L++++ + + + MV H + R S V+ TL
Sbjct: 297 NTDTMYGLDSMIQSTASDYN---FINDMVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSR 353
Query: 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954
G + G E M DP N R +
Sbjct: 354 GVPAIYYGTEQYMTG-------NGDP-------YN---------RAMMTSFNTSTT---- 386
Query: 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFIL 1014
Y+V K L LR ++ A+ G + NN V+I
Sbjct: 387 -------------------------AYNVIKKLAPLRKSNPAIAYGTTQQRWINNDVYIY 421
Query: 1015 TRTEGSTSVYLIINLNSRTETVDLS 1039
R G+ + IN N T
Sbjct: 422 ERKFGNNVALVAINRNLSTSYNITG 446
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWL 616
W+ IY +L F ++N + Y + GII+ +DY++ +G +W+
Sbjct: 6 WRTQSIYFLLTDRFGRTDNST--TATCNTGNEIYCGGSWQ-GIIDHLDYIEGMGFTAIWI 62
Query: 617 TPFYSGPNGDI-------GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
+P D GY +V +FGT ++ L +H++G
Sbjct: 63 SPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 54/374 (14%), Positives = 97/374 (25%), Gaps = 113/374 (30%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP------YTNYYVWKDGLNGKPGTPPNNW 773
H GM ++V+ VP+H + DP + Y + D N + W
Sbjct: 108 HARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDN--LTMVEDCW 165
Query: 774 KH--------INITSREVMR----SQK-------------DVVQSFPLILM--------- 799
+ ++ T V D V
Sbjct: 166 EGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGV 225
Query: 800 -IITEAYSPSLEKVAKYYGTGDTQGTHLSV-NYEIMNKF-----GATSNAKDLENVVNAY 852
+ E + + Y D V NY I + ++ + +L N++ +
Sbjct: 226 YCVGEIDNGNPASDCPYQKVLD------GVLNYPIYWQLLYAFESSSGSISNLYNMIKSV 279
Query: 853 LKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGMESP 910
+ H R A Y+ D A N+L+ + G + +AG+E
Sbjct: 280 ASDCSDPTLLGNFIENHDNPRFAK-YTSDYSQAKNVLSYIFLSDGIPIVYAGEEQHYAG- 337
Query: 911 ILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNA 970
GK Y +R +
Sbjct: 338 ---------------GKVPY-------NREATWLS------------------------- 350
Query: 971 QAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-----ISTPNNYVFILTRTEGSTSVYL 1025
T Y+ +R + A T +N + + T GS + +
Sbjct: 351 --GYDTSAELYTWIATTNAIRKLAIAADSAYITYANDAFYTDSNTIAMAKGTSGSQVITV 408
Query: 1026 IINLNSRTETVDLS 1039
+ N S + L+
Sbjct: 409 LSNKGSSGSSYTLT 422
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 3e-17
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 36/126 (28%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
++E Y+ S + + G R ++ + +G +
Sbjct: 225 ERERALYGAWYEFFPRSE-GTPHTPHGTFRT---------------AARRLPAIAAMGFD 268
Query: 613 TLWLTPFYS-------GPNG-------------DIGYDISNHTEVGKDFGTMEDFDELVK 652
++L P + G N IG H + GT++DFD V
Sbjct: 269 VVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVT 328
Query: 653 LVHSKG 658
G
Sbjct: 329 EAGKLG 334
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 6e-15
Identities = 53/363 (14%), Positives = 103/363 (28%), Gaps = 100/363 (27%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWK-DGLNGKPGTPPNNWK---H 775
+ G++I ++F S + H W K + ++ + DG PP ++
Sbjct: 331 GKLGLEIALDFALQCSPD-HPWVHK-------HPEWFHHRPDGTIAHAENPPKKYQDIYP 382
Query: 776 INITS---------REVMR---------------SQKDVVQSFPLI---------LMIIT 802
I + ++R K V +I ++ +
Sbjct: 383 IAFDADPDGLATETVRILRHWMDHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLA 442
Query: 803 EAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWS 862
EA++ T G S Y ++L + S
Sbjct: 443 EAFTR-----PAMMATLAQIGFQQSYTYFTWRN-----TKQELTEYLTELSGEAASYMRP 492
Query: 863 SWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPE 921
++ I ++ + +L L T ++G EL +P+
Sbjct: 493 NFFANTPDILHAYLQHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPL---------- 542
Query: 922 GYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHY 981
G + YL P W G +
Sbjct: 543 --REGSEEYLD-SEKYQLKPRDWTRAAREGT--------------------------TIA 573
Query: 982 SVYKDLTTLRATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINL---NSRTETV 1036
+ L T+R + A+R T V ++ +GS +V +++NL +++ TV
Sbjct: 574 PLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATV 633
Query: 1037 DLS 1039
L
Sbjct: 634 SLD 636
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 559 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTP 618
N + Q F+ D + + + L LG+ LWL P
Sbjct: 5 NGTMMQ----YFEWYLPDDGTLWTK---------------VANEANNLSSLGITALWLPP 45
Query: 619 FY-SGPNGDIGYDIS---------NHTEVGKDFGTMEDFDELVKLVHSKG 658
Y D+GY + V +GT + + ++ H+ G
Sbjct: 46 AYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAG 95
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 720 HRAGMKILVEFVPNHS--SNKHDWFIKS-------AQKIDPYTNYYVWKD----GLNGKP 766
H AGM++ + V +H ++ +W Q+I W G
Sbjct: 92 HAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTY 151
Query: 767 GTPPNNWKHINIT 779
+ W H +
Sbjct: 152 SSFKWRWYHFDGV 164
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857
L + E +S + K+ Y T GT + + NKF S + ++ +L
Sbjct: 259 LFTVGEYWSYDINKLHNY--IMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLM 316
Query: 858 SGKWSSWM--VGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGM 907
+ + + V H S A + G F GD G+
Sbjct: 317 KDQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGI 372
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 9e-16
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q F+ + NDG + + ++L ++G+ +W+
Sbjct: 2 NGTLMQ----YFEWYTPNDG-QHWKR---------------LQNDAEHLSDIGITAVWIP 41
Query: 618 PFY-SGPNGDIGYDIS---------NHTEVGKDFGTMEDFDELVKLVHSKG 658
P Y D GY V +GT + + + +HS+
Sbjct: 42 PAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRN 92
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 798 LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF---GATSNAKDLENVVNAYLK 854
+ + E + + K+ Y + + + D+ +++ +
Sbjct: 256 MFTVAEYWQNNAGKLENYLNKTS--FNQSVFDVPLHFNLQAASSQGGGYDMRRLLDGTVV 313
Query: 855 SLPSGKWSSWMVGGHSITRIATRYSPDLVD----AMNMLTLLLPGTAVTFAGDELGM 907
S K + V H + S A + G F GD G
Sbjct: 314 SRHPEKAVT-FVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGT 369
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP---------YTNYYVWKDGLNGKPGTPP 770
H +++ + V NH + +A +++P W D G
Sbjct: 89 HSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTY 148
Query: 771 NNWK 774
+++K
Sbjct: 149 SDFK 152
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-14
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 563 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS 621
+Q+L F +S G ++ K+D + GV +WL P
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNM---------------MMGKVDDIAAAGVTHVWLPPPSH 45
Query: 622 GPNGDIGYDISNHTEVGKD-FGTMEDFDELVKLVHSKG 658
+ + GY ++ +G + L+ +H KG
Sbjct: 46 SVSNE-GYMPGRLYDIDASKYGNAAELKSLIGALHGKG 82
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 26/118 (22%)
Query: 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGV 611
+++ + + + + E+ L E G
Sbjct: 120 EVNHTILQAFYWEMNTGEYATEHPEEANLWNL---------------LAERAPELAEAGF 164
Query: 612 ETLWLTPFYSG--PNGDIGYDISN---------HTEVGKDFGTMEDFDELVKLVHSKG 658
+WL P G D+GY + V +GT + + + +H+
Sbjct: 165 TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNND 222
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 720 HRAGMKILVEFVPNHSS--NKHDWFIKSAQKID-PYTNYYVWKD----GLNGKPGTPPNN 772
H +K+ + V NH + + + D P W G NG+ N
Sbjct: 219 HNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWN 278
Query: 773 WKHINIT 779
+ + T
Sbjct: 279 GQCFDGT 285
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 31/120 (25%)
Query: 553 QKEWWKNTVIYQI--LVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELG 610
Q + V+++ +F + I + +D E G
Sbjct: 604 QNAALDSRVMFEGFSNFQAFATKKEEYTNV-----------------VIAKNVDKFAEWG 646
Query: 611 VETLWLTPFYSGPNG--------DIGYDISNHTEVGKD----FGTMEDFDELVKLVHSKG 658
V + P Y GY ++ ++G +GT +D + +K +HSKG
Sbjct: 647 VTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKG 706
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY----VWKDGLNGKPGTPPNNWK 774
H G+K++ ++VP+ + + +A ++D Y + + + +
Sbjct: 703 HSKGIKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQ 761
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 5e-13
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 564 QILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS-G 622
++ + ++ D G G ++ + + + + + + + PF++
Sbjct: 4 KVQLITYADRL--GDGTIKS---------------MTDILRTRFDGVYDGVHILPFFTPF 46
Query: 623 PNGDIGYDISNHTEVGKDFGTMEDFDELVK 652
D G+D +HT+V + G+ +D EL K
Sbjct: 47 DGADAGFDPIDHTKVDERLGSWDDVAELSK 76
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 723 GMKILVEFVPNHSSNKHDWFIKSAQKID--PYTNYYVWKD 760
I+V+ + NH S + F K + Y ++
Sbjct: 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMS 116
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q ++ NDG + + L + G+ +W+
Sbjct: 4 NGTMMQ----YYEWHLENDG-QHWNR---------------LHDDAAALSDAGITAIWIP 43
Query: 618 PFY-SGPNGDIGYDISNHTEVGK---------DFGTMEDFDELVKLVHSKG 658
P Y D+GY + ++G+ +GT + + + S
Sbjct: 44 PAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSND 94
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 7e-12
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 31/111 (27%)
Query: 559 NTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
N + Q F+ NDG + LK G+ +W+
Sbjct: 6 NGTMMQ----YFEWYLPNDG-NHWNR---------------LNSDASNLKSKGITAVWIP 45
Query: 618 PFYSGPNG-DIGYDISNHTEVGK---------DFGTMEDFDELVKLVHSKG 658
P + G + D+GY + ++G+ +GT V + + G
Sbjct: 46 PAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNG 96
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDI----------GYDISNHTEVGKDFGTMEDF 647
+ + + + G + +P G+ Y +++ + GT ++F
Sbjct: 18 TLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEF 77
Query: 648 DELVKLVHSKG 658
E+ G
Sbjct: 78 KEMCAAAEEYG 88
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 52/232 (22%)
Query: 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQ----------KIDPYTNYY-VWKDGLNGKP-- 766
G+K++V+ V NH++ + + +I +++ + V ++ L G
Sbjct: 85 EEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDW 144
Query: 767 --GTPP---------NNW-------------KHINITSREVMRSQKDVVQSFP--LILMI 800
KHI + +
Sbjct: 145 NTQNTQVQSYLKRFLERALNDGADGFRFDAAKHIELPDDGSY--GSQFWPNITNTSAEFQ 202
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGK 860
E S + A Y D T + + I + + + N+ + Y + + K
Sbjct: 203 YGEILQDSASRDAAYANYMDV--TASNYGHSIRSAL--KNRNLGVSNISH-YASDVSADK 257
Query: 861 WSSWMVGGHSITRIATRYSPDLVD-----AMNMLTLLLPGTAVTFAGDELGM 907
+W V H S + D ++ T + F+ E G
Sbjct: 258 LVTW-VESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGG 308
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDI--------GYDISNHTEVGK---DFGTMED 646
I KI E G+ +WL P G +G +D+ + + G FG+ E+
Sbjct: 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEE 88
Query: 647 FDELVKLVHSKG 658
L++ H+ G
Sbjct: 89 LVRLIQTAHAYG 100
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 6e-07
Identities = 71/606 (11%), Positives = 150/606 (24%), Gaps = 225/606 (37%)
Query: 340 LLLCILEFWLKRGVDGFGMDSVLKL-YE--HESFANEPRLP--------EAAGRPDSDPT 388
L L + V F ++ VL++ Y+ E R P E R +D
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 389 AYDHIYTIDQPETYEMLYKWRTLVEK--------------FGNQS--ADRQPSCADKFAI 432
+ Y + + + Y L R + + G D C + +
Sbjct: 125 VFAK-YNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWVALD---VCLS-YKV 176
Query: 433 HSVYLNPVYAGSGNQNW-RAGNQNRAES-MEHRADLLHQ--------------------- 469
++ W N N E+ +E LL+Q
Sbjct: 177 QCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 470 ----------------------------VVSHF-IYCGIVDDTSALMVMNERRLSTIASR 500
+ F + C I+ T V + +T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 501 TMAAMSLGFIVMVTPWTIQEVVAACTGSK-------MNWVALLVLLSTASSVLSSVRCNQ 553
++ S+ TP ++ ++ + + L S + S+R
Sbjct: 290 SLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL----SIIAESIRDGL 341
Query: 554 KEW--WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL---GLGIIEKIDYLKE 608
W WK + + L RK + L++ I +
Sbjct: 342 ATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----- 391
Query: 609 LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668
+ +W D +V +H + K++
Sbjct: 392 --LSLIWFDVIK------------------------SDVMVVVNKLHKYSLVEKQPKEST 425
Query: 669 NRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILV 728
+Y + + +++A+H ++ +
Sbjct: 426 ISIPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSD--------------------- 462
Query: 729 EFVPNHSSNKHDWFI-------KSAQKIDPYTNYYV---W------KDGLNGKPGTPPNN 772
+ +P + I + +++ + ++ + D N
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 773 W--------KHI--NITSRE----------------VMRSQ-KDVVQSFPLILM-----I 800
+I N E ++ S+ D+++ + LM I
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEAI 579
Query: 801 ITEAYS 806
EA+
Sbjct: 580 FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 63/439 (14%), Positives = 100/439 (22%), Gaps = 162/439 (36%)
Query: 131 YMKKFKHRIDAKN--DSLHLI------DSVLGVPTVDIES-----LFSTKPPSHSMCLTD 177
+ F D K+ D I D ++ + +K +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 178 SKHQCQGQNFLF-------QGRPVNLMSYVLGRE-LRKHPPHSTPHLPHVCCP------- 222
+ FL + + Y+ R+ L + +V
Sbjct: 85 EVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQPYLKLR 141
Query: 223 SGLPS-TSRPDI-----EGEGPS--------SEK---------YWGDILERTVSSNSLQA 259
L ++ G G + S K +W ++ L+
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 260 LQRVY--------PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHC-----AVP 306
LQ++ HS + + S+ L S P Y C V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKP-YEN-----CLLVLLNVQ 254
Query: 307 NPKVLMVPNADIAWNPSCQ---TT----VVDCQMFCYEITLLLCILEFWLKRGVDGFGMD 359
N K A+N SC+ TT V D L D
Sbjct: 255 NAKAWN------AFNLSCKILLTTRFKQVTDFLSAATTT-------HISLDHHSMTLTPD 301
Query: 360 SVLKLYEHESFAN-----EPRLPEAA-----------GRPDSDPTA----YDHIYTIDQ- 398
V L LP D A + H D+
Sbjct: 302 EVKSL-----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKL 355
Query: 399 ------------PETYEMLYK-------------------W--------RTLVEKFGNQS 419
P Y ++ W +V K S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 420 -ADRQPSCADKFAIHSVYL 437
++QP +I S+YL
Sbjct: 416 LVEKQP-KESTISIPSIYL 433
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 8/96 (8%), Positives = 25/96 (26%), Gaps = 24/96 (25%)
Query: 572 DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDI---- 627
+ + D + ++ + G +W+ + +
Sbjct: 26 NVVREAPNDWYN--------------ILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSK 71
Query: 628 -----GYDISNHTEVGKDFGTMEDFDELVKLVHSKG 658
GY + + G+ +G+ + + G
Sbjct: 72 SGGGEGYFWHDFNKNGR-YGSDAQLRQAASALGGAG 106
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 1uok_A | 558 | Oligo-1,6-glucosidase; sugar degradation, hydrolas | 100.0 | |
| 1zja_A | 557 | Trehalulose synthase; sucrose isomerase, alpha-amy | 100.0 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 100.0 | |
| 3aj7_A | 589 | Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro | 100.0 | |
| 1m53_A | 570 | Isomaltulose synthase; klebsiella SP. LX3, sucrose | 100.0 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 100.0 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 100.0 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 100.0 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 100.0 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 100.0 | |
| 4aie_A | 549 | Glucan 1,6-alpha-glucosidase; hydrolase, glycoside | 100.0 | |
| 2ze0_A | 555 | Alpha-glucosidase; TIM barrel, glucoside hydrolase | 100.0 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 100.0 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 100.0 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 100.0 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 100.0 | |
| 2zic_A | 543 | Dextran glucosidase; TIM barrel, (beta/alpha)8-bar | 100.0 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 100.0 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 100.0 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 100.0 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 100.0 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 100.0 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 100.0 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 100.0 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 100.0 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 100.0 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 100.0 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 100.0 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 100.0 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 100.0 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 100.0 | |
| 3k8k_A | 669 | Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet | 100.0 | |
| 1wza_A | 488 | Alpha-amylase A; hydrolase, halophilic, thermophil | 100.0 | |
| 3czg_A | 644 | Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; | 100.0 | |
| 1g5a_A | 628 | Amylosucrase; glycosyltransferase, glycoside hydro | 100.0 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 100.0 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 100.0 | |
| 1lwj_A | 441 | 4-alpha-glucanotransferase; alpha-amylase family, | 100.0 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 100.0 | |
| 3ucq_A | 655 | Amylosucrase; thermostability, amylose synthesis, | 100.0 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 100.0 | |
| 4aee_A | 696 | Alpha amylase, catalytic region; hydrolase, hypert | 100.0 | |
| 2wc7_A | 488 | Alpha amylase, catalytic region; CD/PUL-hydrolyzin | 100.0 | |
| 4aef_A | 645 | Neopullulanase (alpha-amylase II); hydrolase, ther | 100.0 | |
| 3edf_A | 601 | FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c | 100.0 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 100.0 | |
| 1j0h_A | 588 | Neopullulanase; beta-alpha-barrels, hydrolase; 1.9 | 100.0 | |
| 1qho_A | 686 | Alpha-amylase; glycoside hydrolase, starch degrada | 100.0 | |
| 1ea9_C | 583 | Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A | 100.0 | |
| 1wzl_A | 585 | Alpha-amylase II; pullulan, GH-13, alpha-amylase f | 100.0 | |
| 2dh2_A | 424 | 4F2 cell-surface antigen heavy chain; TIM-barrel, | 100.0 | |
| 1ji1_A | 637 | Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6 | 100.0 | |
| 2aaa_A | 484 | Alpha-amylase; glycosidase; 2.10A {Aspergillus nig | 100.0 | |
| 2guy_A | 478 | Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; | 100.0 | |
| 1cyg_A | 680 | Cyclodextrin glucanotransferase; glycosyltransfera | 100.0 | |
| 3bmv_A | 683 | Cyclomaltodextrin glucanotransferase; glycosidase, | 100.0 | |
| 1d3c_A | 686 | Cyclodextrin glycosyltransferase; alpha-amylase, p | 100.0 | |
| 3dhu_A | 449 | Alpha-amylase; structural genomics, hydrolase, gly | 99.97 | |
| 3bc9_A | 599 | AMYB, alpha amylase, catalytic region; acarbose, t | 99.97 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 99.97 | |
| 1r7a_A | 504 | Sucrose phosphorylase; beta-alpha-barrels, dimer, | 99.97 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.97 | |
| 1m7x_A | 617 | 1,4-alpha-glucan branching enzyme; alpha/beta barr | 99.97 | |
| 1wpc_A | 485 | Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr | 99.96 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 99.96 | |
| 1ht6_A | 405 | AMY1, alpha-amylase isozyme 1; barley, beta-alpha- | 99.96 | |
| 3zss_A | 695 | Putative glucanohydrolase PEP1A; alpha-glucan bios | 99.96 | |
| 1mxg_A | 435 | Alpha amylase; hyperthermostable, family 13 glycos | 99.96 | |
| 1ud2_A | 480 | Amylase, alpha-amylase; calcium-free, alkaline, hy | 99.96 | |
| 3bh4_A | 483 | Alpha-amylase; calcium, carbohydrate metabolism, g | 99.95 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.95 | |
| 2wan_A | 921 | Pullulanase; hydrolase, glycoside hydrolase, polys | 99.95 | |
| 1gcy_A | 527 | Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b | 99.95 | |
| 1hvx_A | 515 | Alpha-amylase; hydrolase, glycosyltransferase, the | 99.95 | |
| 2e8y_A | 718 | AMYX protein, pullulanase; multiple domain, beta-a | 99.95 | |
| 2wsk_A | 657 | Glycogen debranching enzyme; carbohydrate metaboli | 99.95 | |
| 1gjw_A | 637 | Maltodextrin glycosyltransferase; alpha-amylase, m | 99.95 | |
| 2vr5_A | 718 | Glycogen operon protein GLGX; hydrolase, glycosida | 99.94 | |
| 2bhu_A | 602 | Maltooligosyltrehalose trehalohydrolase; alpha-amy | 99.94 | |
| 1jae_A | 471 | Alpha-amylase; glycosidase, carbohydrate metabolis | 99.94 | |
| 3aml_A | 755 | OS06G0726400 protein; starch-branching, transferas | 99.94 | |
| 3k1d_A | 722 | 1,4-alpha-glucan-branching enzyme; mycobacterium t | 99.94 | |
| 3m07_A | 618 | Putative alpha amylase; IDP00968, csgid, structura | 99.93 | |
| 1g94_A | 448 | Alpha-amylase; beta-alpha-8-barrel, 3 domain struc | 99.93 | |
| 1bf2_A | 750 | Isoamylase; hydrolase, glycosidase, debranching en | 99.92 | |
| 3vgf_A | 558 | Malto-oligosyltrehalose trehalohydrolase; alpha/be | 99.92 | |
| 1ua7_A | 422 | Alpha-amylase; beta-alpha-barrels, acarbose, greek | 99.91 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.9 | |
| 3faw_A | 877 | Reticulocyte binding protein; TIM barrel, beta bar | 99.89 | |
| 2fhf_A | 1083 | Pullulanase; multiple domain, beta-alpha-barrel, a | 99.89 | |
| 2ya0_A | 714 | Putative alkaline amylopullulanase; hydrolase, gly | 99.89 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 99.88 | |
| 2ya1_A | 1014 | Putative alkaline amylopullulanase; hydrolase, gly | 99.87 | |
| 1iv8_A | 720 | Maltooligosyl trehalose synthase; beta alpha barre | 99.84 | |
| 4aio_A | 884 | Limit dextrinase; hydrolase, pullulanase, glycosid | 99.83 | |
| 3hje_A | 704 | 704AA long hypothetical glycosyltransferase; treha | 99.81 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.73 | |
| 3aie_A | 844 | Glucosyltransferase-SI; beta-alpha-barrels; HET: M | 99.68 | |
| 3klk_A | 1039 | Glucansucrase; native form, open conformation, mul | 99.59 | |
| 3ttq_A | 1108 | Dextransucrase; (beta/alpha)8 barrel, transferase; | 99.54 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 94.71 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 94.55 | |
| 3mi6_A | 745 | Alpha-galactosidase; NESG, structural genomics, PS | 94.22 | |
| 1qnr_A | 344 | Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt | 93.33 | |
| 1zy9_A | 564 | Alpha-galactosidase; TM1192, struc genomics, joint | 92.66 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 91.88 | |
| 2yfo_A | 720 | Alpha-galactosidase-sucrose kinase agask; hydrolas | 90.3 | |
| 3civ_A | 343 | Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. | 87.77 | |
| 2whl_A | 294 | Beta-mannanase, baman5; glycoside hydrolase, hydro | 87.28 | |
| 3n9k_A | 399 | Glucan 1,3-beta-glucosidase; aromatic entranceway/ | 87.17 | |
| 3vup_A | 351 | Beta-1,4-mannanase; TIM barrel, digestive fluid, H | 86.65 | |
| 2xn2_A | 732 | Alpha-galactosidase; hydrolase, glycosidase; HET: | 86.37 | |
| 3nco_A | 320 | Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 | 85.98 | |
| 3pzt_A | 327 | Endoglucanase; alpha/beta barrel, glycosyl hydrola | 85.68 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 85.62 | |
| 1ece_A | 358 | Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. | 85.41 | |
| 1bqc_A | 302 | Protein (beta-mannanase); glycosyl hydrolase, fami | 84.78 | |
| 2y8k_A | 491 | Arabinoxylanase, carbohydrate binding family 6; hy | 84.03 | |
| 3icg_A | 515 | Endoglucanase D; cellulase, xylanase, carbohydrate | 83.89 | |
| 3jug_A | 345 | Beta-mannanase; TIM-barrel, glycosidase, hydrolase | 83.71 | |
| 3pzg_A | 383 | Mannan endo-1,4-beta-mannosidase. glycosyl hydrol | 83.18 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 82.58 | |
| 3ndz_A | 345 | Endoglucanase D; cellotriose, xylanase, carbohydra | 81.75 | |
| 1h4p_A | 408 | Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca | 81.69 | |
| 1vjz_A | 341 | Endoglucanase; TM1752, structural genomics, JCSG, | 81.09 | |
| 3qho_A | 458 | Endoglucanase, 458AA long hypothetical endo-1,4-be | 80.93 | |
| 1edg_A | 380 | Endoglucanase A; family A, cellulases, xylanases, | 80.84 | |
| 4fnq_A | 729 | Alpha-galactosidase AGAB; glycoside hydrolase, hyd | 80.77 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 80.32 | |
| 1rh9_A | 373 | Endo-beta-mannanase; endo-beta-mannase, retaining, | 80.09 | |
| 3aof_A | 317 | Endoglucanase; glycosyl hydrolase family 5, cellul | 80.07 |
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-64 Score=611.84 Aligned_cols=418 Identities=34% Similarity=0.663 Sum_probs=349.0
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISN 633 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~d 633 (1065)
|+||+++|||||+|++|++++++++|||+ ||+++|||||+||||+|||+||++++..+|||+++|
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~---------------gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~d 67 (558)
T 1uok_A 3 KQWWKESVVYQIYPRSFMDSNGDGIGDLR---------------GIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISD 67 (558)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSE
T ss_pred chhhhcCeEEEEecHHhcCCCCCCcCCHH---------------HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCccc
Confidence 68999999999999999999999999999 999999999999999999999999998889999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|||+|||++||++||++|
T Consensus 68 y~~id~~~Gt~~df~~lv~~~----------------------------------------------------------- 88 (558)
T 1uok_A 68 YCKIMNEFGTMEDWDELLHEM----------------------------------------------------------- 88 (558)
T ss_dssp EEEECGGGCCHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ccccCcccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCCCCCCCCCCC---------Cc---------
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNN---------WK--------- 774 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~dG~p~~~~~~---------W~--------- 774 (1065)
|++||+||+|+|+||+|.+|+||.++.. ..++|.+||+|.+..+|. ++++ |.
T Consensus 89 ------h~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~---~p~~~~~~f~~~~w~~~~~~~~~y 159 (558)
T 1uok_A 89 ------HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGK---EPNNWGAAFSGSAWQYDEMTDEYY 159 (558)
T ss_dssp ------HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSS---CSSCBBCTTSSBSEEEETTTTEEE
T ss_pred ------HHCCCEEEEEEecccccccchHHHHHhcCCCCCcccceEeccCcCCC---CCccccccCCCccccccCCcCcEE
Confidence 9999999999999999999999998764 477899999998765553 2222 21
Q ss_pred ---------cccCCCHHHHHHHHHHHHh----------------c-----------------------------------
Q psy15051 775 ---------HINITSREVMRSQKDVVQS----------------F----------------------------------- 794 (1065)
Q Consensus 775 ---------~ln~~n~~v~~~l~~~lk~----------------~----------------------------------- 794 (1065)
.||+.||+|+++|.++++. +
T Consensus 160 ~~~f~~~~pdLn~~np~Vr~~i~~~~~~W~~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (558)
T 1uok_A 160 LHLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHE 239 (558)
T ss_dssp ECSSCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHH
T ss_pred eeccccccccccCCCHHHHHHHHHHHHHHHHcCCCEEEEccccccccccccCCCCCcccccccccccccCChHHHHHHHH
Confidence 1999999999999998322 0
Q ss_pred -------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH-------hh-cCCChHHHHHHHHHHhhcCCCC
Q psy15051 795 -------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK-------FG-ATSNAKDLENVVNAYLKSLPSG 859 (1065)
Q Consensus 795 -------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~-------~~-~~~~~~~l~~~l~~~~~~~~~~ 859 (1065)
.++++++||.|...+.....|.+.+ ..+++++|+|.+... +. ...+...+...+..+....+..
T Consensus 240 ~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 318 (558)
T 1uok_A 240 MNEEVLSHYDIMTVGEMPGVTTEEAKLYTGEE-RKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHT 318 (558)
T ss_dssp HHHHTGGGSCCEEEEECTTCCHHHHHHHHCGG-GCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhhccCCeEEEEeccCCCHHHHHHHhccC-CCccceEEehhhhhcccccccccccCCCCHHHHHHHHHHHHHhcccC
Confidence 0157999999976677777777632 245788888765421 11 2345678888888777666655
Q ss_pred CcccccccCCChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc----
Q psy15051 860 KWSSWMVGGHSITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD---- 928 (1065)
Q Consensus 860 ~~~~~flenHD~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~---- 928 (1065)
.+..+|++|||+.|+.++++.+ +++++++++|++||+|+||||||+|+.+.. ..++++.||+.++..++
T Consensus 319 ~~~~~fl~NHD~~R~~~~~g~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~~~~~~~~~ 398 (558)
T 1uok_A 319 GWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVME 398 (558)
T ss_dssp SCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHHT
T ss_pred CccceeecCCCccchhhhcCCchhhhHHHHHHHHHHHHhCCCceEEEechhcCccCCCCCCHHhhcChhhhcchhhhhhh
Confidence 6777899999999999998753 589999999999999999999999999864 23567788876553321
Q ss_pred ----------cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 929 ----------NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 929 ----------~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
.....+||++|.||+|+...++||++++||+|++++|..+|++.|..++.+++++||+|++||+++|+|+
T Consensus 399 ~g~~~~~~~~~~~~~sRd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~y~~Li~lRk~~~~l~ 478 (558)
T 1uok_A 399 RGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVV 478 (558)
T ss_dssp SCCCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHHH
T ss_pred cCCcHHHhhhhhccccCCCCcCCccCCCcCCCCCcCCCCCCcCCccccccCHHHHhhccccHHHHHHHHHHHHccCcccc
Confidence 1233468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEc-cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 999 MGDYKIST-PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 999 ~G~~~~l~-~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
.|+++.+. .+++|+||.|..++++++||+|+++++++++++..... +.+++++++..
T Consensus 479 ~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~~~~-~~~~~ll~~~~ 536 (558)
T 1uok_A 479 YGSYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDISY-SEVELLIHNYD 536 (558)
T ss_dssp HCEEEEESTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTTCCC-SCEEEEEESSC
T ss_pred ccceEEeecCCCCEEEEEEEeCCcEEEEEEECCCCCEEEeccccccc-ccceEEecCCC
Confidence 99999875 45689999999999999999999999999999753211 23567777653
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-64 Score=607.50 Aligned_cols=417 Identities=33% Similarity=0.643 Sum_probs=345.8
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.+.||+++|||||||++|++++++++|||+ ||+++|||||+||||+||||||++++..+|||+++
T Consensus 3 ~~~w~~~~viYqi~~~~F~~~~~dg~Gdl~---------------gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~ 67 (557)
T 1zja_A 3 GAPWWKSAVFYQVYPRSFKDTNGDGIGDFK---------------GLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDIS 67 (557)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCS
T ss_pred cchhhhcCcEEEEEchHhcCCCCCCccCHH---------------HHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcc
Confidence 568999999999999999999999999999 99999999999999999999999999888999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||++|||+|||++||++||++|
T Consensus 68 dy~~idp~~Gt~~df~~Lv~~a---------------------------------------------------------- 89 (557)
T 1zja_A 68 DYREVMKEYGTMEDFDRLMAEL---------------------------------------------------------- 89 (557)
T ss_dssp EEEEECTTTCCHHHHHHHHHHH----------------------------------------------------------
T ss_pred cccccCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCCCCCCCCCCCC---------c--------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNW---------K-------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~dG~p~~~~~~W---------~-------- 774 (1065)
|++||+||||+|+||++.+|+||.++.. +.++|.+||+|.+..+|. ++++| .
T Consensus 90 -------H~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~---~p~~~~~~f~~~~w~~~~~~~~~ 159 (557)
T 1zja_A 90 -------KKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGH---EPNNYPSFFGGSAWEKDPVTGQY 159 (557)
T ss_dssp -------HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCBTTB---CSSCCBCTTSSBSEEEETTTTEE
T ss_pred -------HHCCCEEEEEEeccccccchhHHHHhhcCCCCCCccceEecCCcCCC---CCccccccCCCccccccCCcCcE
Confidence 9999999999999999999999998864 477899999998754443 22222 1
Q ss_pred ----------cccCCCHHHHHHHHHHHHh----------------c----------------------------------
Q psy15051 775 ----------HINITSREVMRSQKDVVQS----------------F---------------------------------- 794 (1065)
Q Consensus 775 ----------~ln~~n~~v~~~l~~~lk~----------------~---------------------------------- 794 (1065)
.||+.||+||++|.++++. +
T Consensus 160 y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (557)
T 1zja_A 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYTQGPNLHRYLQEM 239 (557)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHH
T ss_pred EEecccccCCccCCCCHHHHHHHHHHHHHHHHcCCCEEeecchhhcccccccCcCCCcccccccccccCChHHHHHHHHH
Confidence 1999999999999998322 0
Q ss_pred ------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH------hh-cCCChHHHHHHHHHHhhcCCCCCc
Q psy15051 795 ------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK------FG-ATSNAKDLENVVNAYLKSLPSGKW 861 (1065)
Q Consensus 795 ------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~------~~-~~~~~~~l~~~l~~~~~~~~~~~~ 861 (1065)
.++++++||.|...+.....|.+.+ ..+++++|++.+... +. ...+...+...+..+...++...+
T Consensus 240 ~~~v~~~~~~~~igE~~~~~~~~~~~y~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 318 (557)
T 1zja_A 240 HEKVFDHYDAVTAGEIFGAPLNQVPLFIDSR-RKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIAGEYGW 318 (557)
T ss_dssp HHHTGGGSCCEEEEECCSCCGGGHHHHHCGG-GCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHhccCCeEEEEeccCCCHHHHHHHhccC-CCcccEEEehhhhhhcccccccccCCCCHHHHHHHHHHHHHhcccCCc
Confidence 1258999999976566677776532 246788887765421 11 234567788888776665555567
Q ss_pred ccccccCCChhhHhhhcCHH-------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc-----
Q psy15051 862 SSWMVGGHSITRIATRYSPD-------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD----- 928 (1065)
Q Consensus 862 ~~~flenHD~~Rl~s~~~~~-------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~----- 928 (1065)
..+|++|||+.|+.++++.+ +++++++++||+||+|+||||||+||.+.. ..++++.||+.++...+
T Consensus 319 ~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~~~~~~~~~g 398 (557)
T 1zja_A 319 NTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTPFIFQGDELGMTNYPFKTLQDFDDIEVKGFFQDYVETG 398 (557)
T ss_dssp BEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSGGGCCCHHHHHHHHHHTTTT
T ss_pred cceeccCCCCcchhhhhCCCchhhHHHHHHHHHHHHHhCCCceEEEecccccccCCCcCCHHHccCHHHhhhHHHHhhcC
Confidence 77899999999999988643 489999999999999999999999999853 23567778876553321
Q ss_pred ---------cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccC
Q psy15051 929 ---------NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM 999 (1065)
Q Consensus 929 ---------~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~ 999 (1065)
.+...+||.+|.||+|+...++||++++||+|++.+|..+|++.|...+.+++++||+|++||+++|+|+.
T Consensus 399 ~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~~~~Li~lRk~~~~l~~ 478 (557)
T 1zja_A 399 KATAEELLTNVALTSRDNARTPFQWDDSANAGFTTGKPWLKVNPNYTEINAAREIGDPKSVYSFYRNLISIRHETPALST 478 (557)
T ss_dssp SSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHTCTTSHHHHHHHHHHHHHHCTHHHH
T ss_pred CccHHHHHhhhccccCCCCcCCccCCCCCCCCCCCCCCCCcCCccccccCHHHHhcccchHHHHHHHHHHHHccCchhhc
Confidence 12233588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEc-cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 1000 GDYKIST-PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1000 G~~~~l~-~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
|+++.+. .+++|+||.|..+++.++||+|+++++++++++.. .+.+++++++..
T Consensus 479 g~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~---~~~~~~l~~~~~ 533 (557)
T 1zja_A 479 GSYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDG---MHIAETLIESSS 533 (557)
T ss_dssp SEEEESCTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTT---CCEEEEEEEESC
T ss_pred ceEEEeecCCCcEEEEEEEcCCceEEEEEECCCCCEEEeccCC---CccceEEEecCC
Confidence 9999875 45689999999888999999999999999998641 122367776553
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=602.76 Aligned_cols=415 Identities=28% Similarity=0.567 Sum_probs=336.3
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
+++||+++||||||||+|++++++++|||+ ||++||||||+||||+||||||+++++.+|||+++
T Consensus 3 ~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~---------------Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~ 67 (549)
T 4aie_A 3 SASWWKNAVVYQVYPKSFQDSNGDGIGDLQ---------------GIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDIS 67 (549)
T ss_dssp -CCGGGSCCEEEECGGGTCCSSSSSSCCHH---------------HHHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCS
T ss_pred CchhhccCeEEEEEcchhcCCCCCCCcCHH---------------HHHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCcc
Confidence 578999999999999999999999999999 99999999999999999999999999888999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||++|||+|||++|||+||++|
T Consensus 68 dy~~vdp~~Gt~~dfk~Lv~~a---------------------------------------------------------- 89 (549)
T 4aie_A 68 DYEAIDPQYGTMADMDELISKA---------------------------------------------------------- 89 (549)
T ss_dssp EEEEECTTTCCHHHHHHHHHHH----------------------------------------------------------
T ss_pred CCCCcCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCCCCCCCCCc-----------------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKPGTPPNNWK----------------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p~~~~~~W~----------------- 774 (1065)
|++||+||||+|+||||.+|+||.+...+ ..+|.+||+|.+...+. ++++|.
T Consensus 90 -------H~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 159 (549)
T 4aie_A 90 -------KEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEH---EPNDLKSAFSGSAWKYDERSGQY 159 (549)
T ss_dssp -------HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTB---CSSCCBCTTSSBSEEEETTTTEE
T ss_pred -------HHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccC---CCCCcccccCCCcccccccCCce
Confidence 99999999999999999999999998766 67899999998765333 111111
Q ss_pred ----------cccCCCHHHHHHHHHHHHh--------------------------------------------cCCceEE
Q psy15051 775 ----------HINITSREVMRSQKDVVQS--------------------------------------------FPLILMI 800 (1065)
Q Consensus 775 ----------~ln~~n~~v~~~l~~~lk~--------------------------------------------~~~~~~l 800 (1065)
.||+.||+|+++|.++++. ..+++++
T Consensus 160 ~~~~f~~~~~dln~~np~v~~~i~~~~~~W~e~gvDGfRlD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (549)
T 4aie_A 160 YLHFFADQQPDLNWQNTELRQKIYNMMNFWLDKGIGGFRMDVIELIGKDPDKNIRENGPMLHPYLQEMNKATFGKRDVMT 239 (549)
T ss_dssp EECSSCTTSCBBCTTCHHHHHHHHHHHHHHHHTTCCEEEETTGGGTTCBGGGTBCTTCTTHHHHHHHHHHHTTTTTCCEE
T ss_pred EecccCCCCCccccCCHHHHHHHHHHHHHHHHhcCCceeEecHHhccccchhhhcccccccchHHHhhhhccccccceee
Confidence 1999999999999998332 0226899
Q ss_pred EeecCCCChHHHhhhccCCCCccccccccHHHHHHh---------hcCCChHHHHHHHHHHhhcCC-CCCcccccccCCC
Q psy15051 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF---------GATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHS 870 (1065)
Q Consensus 801 igE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~-~~~~~~~flenHD 870 (1065)
+||.|...+.....|.+. ....+.+.+.+...... ........+............ ...+..+|++|||
T Consensus 240 vgE~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD 318 (549)
T 4aie_A 240 VGETWNATPKIAEEYSDP-DRHELSMVFQFENQSLDQQPGKEKWDLKPLDLGELKKVLVKWQTKIDFDHAWNSLFWENHD 318 (549)
T ss_dssp EEECTTCCHHHHHHHHCG-GGCSCSEEECCGGGGGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSSCTTSCCCEECSCCTT
T ss_pred eecccCCCHHHHHHhcCC-ccccccccccccccccccccccccccccccchHHHHHHHHHhhhhccccccccceeeccCC
Confidence 999999877666555442 22233444433322111 112344556665555554443 4456677999999
Q ss_pred hhhHhhhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc-------------cc
Q psy15051 871 ITRIATRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD-------------NY 930 (1065)
Q Consensus 871 ~~Rl~s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~-------------~~ 930 (1065)
+.|+.++++. +++++++++++++||+||||||+|+|+.+.. .......||...+...+ ..
T Consensus 319 ~~r~~s~~~~~~~~~~~~~~~~~~~~~~~pG~P~iy~G~E~g~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~ 398 (549)
T 4aie_A 319 IPRVISRWGNDQEYRVQCAKMFAIILHMMHGTPYIFNGEEIGMTNCPVKNIDEVEDIESINMYNERLAEGYDEEELIHAI 398 (549)
T ss_dssp SCCHHHHHSCCSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chhhhhhcCCcHHHHHHHHHHHHHHHhcCCCceEEEcchhhCccCCCCCChhhcCCHHHHhhHHHHHhcCCCHHHHHhhh
Confidence 9999998864 3678889999999999999999999998753 34455667665443321 12
Q ss_pred cccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC-C
Q psy15051 931 LKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN-N 1009 (1065)
Q Consensus 931 ~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~-~ 1009 (1065)
...+|+.+|.+|+|++..++||++..+|++++++|..+|++.|..++.+++++||+|++|||++|+|+.|+++.+..+ +
T Consensus 399 ~~~~r~~~R~~m~W~~~~~~gfs~~~~~~~~~~~~~~~nv~~q~~d~~Sll~~~r~Li~lRk~~pal~~G~~~~~~~~~~ 478 (549)
T 4aie_A 399 NVKGRDNARRPMQWNDEKNAGFSEVDPWLSVNPNYKDINVENALADPNSIFYTYQKLIKLRHENPIVVDGDFSLVSNTQD 478 (549)
T ss_dssp HHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHHHHCEEEECTTCCT
T ss_pred hccCCccccCCCCCCCCCCCCCCCCCccccCCcchhhhhHHHHHhCcchHHHHHHHHHHHHhhCHHhhCCceEEEecCCC
Confidence 235788899999999999999999999999999999999999999999999999999999999999999999988764 5
Q ss_pred cEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCC
Q psy15051 1010 YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNS 1057 (1065)
Q Consensus 1010 ~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~ 1057 (1065)
.|+||.|..+++++|||+|+|+++++++++ +.+++++++...
T Consensus 479 ~v~a~~R~~~~~~~lvv~N~s~~~~~~~~~------~~~~~ll~~~~~ 520 (549)
T 4aie_A 479 AVLAYYRILNDKKWLVVANLSNEEQNFVSN------DQIETILSNYPE 520 (549)
T ss_dssp TEEEEEEEETTEEEEEEEECSSSCEEEECC------CCEEEEEESSSC
T ss_pred cEEEEEEEeCCCEEEEEEECCCCCEEEeCC------CCeEEEccCCCc
Confidence 799999999999999999999999998775 456677765443
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-64 Score=608.47 Aligned_cols=419 Identities=32% Similarity=0.641 Sum_probs=347.3
Q ss_pred cCChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCc
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYD 630 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~ 630 (1065)
...+.||+++|||||||++|++++++++|||+ ||+++|||||+||||+||||||++++..+|||+
T Consensus 14 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~---------------gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd 78 (570)
T 1m53_A 14 SEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIR---------------GIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYD 78 (570)
T ss_dssp -CCCCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHHTCCEEEECCCEECCCTTTTSS
T ss_pred ccCchhHhhCcEEEEechhhccCCCCCccCHH---------------HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCC
Confidence 34578999999999999999999999999999 999999999999999999999999998889999
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC
Q psy15051 631 ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG 710 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
++||++|||+|||++||++||++|
T Consensus 79 ~~dy~~idp~~Gt~~df~~lv~~a-------------------------------------------------------- 102 (570)
T 1m53_A 79 ISNYRQIMKEYGTMEDFDSLVAEM-------------------------------------------------------- 102 (570)
T ss_dssp CSEEEEECGGGCCHHHHHHHHHHH--------------------------------------------------------
T ss_pred cccccccCcccCCHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred cccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCCCCCCCCCCC---------Cc------
Q psy15051 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNN---------WK------ 774 (1065)
Q Consensus 711 ~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~dG~p~~~~~~---------W~------ 774 (1065)
|++||+||+|+|+||++.+|+||.++.. ..++|.+||+|.++.+|. ++++ |.
T Consensus 103 ---------H~~Gi~VilD~V~NH~s~~~~wf~~~~~~~~~~y~d~y~~~~~~~g~---~p~~~~~~f~~~~w~~~~~~~ 170 (570)
T 1m53_A 103 ---------KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQ---PPNNYPSFFGGSAWQKDAKSG 170 (570)
T ss_dssp ---------HHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSS---CSSCCBCTTSSBSEEECTTTC
T ss_pred ---------HHCCCEEEEEEeccccccccHHHHHhhcCCCCCCccceeecCCCCCC---CCccccccCCCccccccCCCC
Confidence 9999999999999999999999998764 478899999998765443 2222 21
Q ss_pred ------------cccCCCHHHHHHHHHHHHh----------------------c--------------------------
Q psy15051 775 ------------HINITSREVMRSQKDVVQS----------------------F-------------------------- 794 (1065)
Q Consensus 775 ------------~ln~~n~~v~~~l~~~lk~----------------------~-------------------------- 794 (1065)
.||+.||+||++|.++++. +
T Consensus 171 ~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 250 (570)
T 1m53_A 171 QYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQ 250 (570)
T ss_dssp CEEECSSCTTCCBBCTTSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHH
T ss_pred cEEECcccCcCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEccccccccccccccCCCcccccccccccCchHHHHHHH
Confidence 1999999999999998322 0
Q ss_pred --------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH-------hh-cCCChHHHHHHHHHHhhcCCC
Q psy15051 795 --------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK-------FG-ATSNAKDLENVVNAYLKSLPS 858 (1065)
Q Consensus 795 --------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~-------~~-~~~~~~~l~~~l~~~~~~~~~ 858 (1065)
.++++++||.|...+.....|.+.+ ..+++++|+|.+... +. ...+...+...+..+...++.
T Consensus 251 ~~~~~v~~~~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 329 (570)
T 1m53_A 251 EMNRKVLSRYDVATAGEIFGVPLDRSSQFFDRR-RHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGK 329 (570)
T ss_dssp HHHHHTGGGSCCEEEEECTTCCGGGTHHHHCGG-GCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCeEEEecccCCCHHHHHHHhccc-CcccceeechhhhhcccccccccccCCCCHHHHHHHHHHHHHhccc
Confidence 1157999999976666667776532 246788887766532 11 233457788878776665555
Q ss_pred CCcccccccCCChhhHhhhcCHH-------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc--
Q psy15051 859 GKWSSWMVGGHSITRIATRYSPD-------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD-- 928 (1065)
Q Consensus 859 ~~~~~~flenHD~~Rl~s~~~~~-------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~-- 928 (1065)
..+..+|++|||+.|+.++++.+ +++++++++|++||+|+||||||+|+.+.. ..++++.||+.++..++
T Consensus 330 ~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~D~~~~~~~~~~~ 409 (570)
T 1m53_A 330 YGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYV 409 (570)
T ss_dssp TCCBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGGGCCCHHHHHHHHHHT
T ss_pred CCcccccCCCCCchhhHHhhCCCchhHHHHHHHHHHHHHHhCCCCeEEEechhcCCCCCCCCCHHhccCHHHhcchhhhh
Confidence 56777899999999999988643 589999999999999999999999999853 33567788876553321
Q ss_pred ------------cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccc
Q psy15051 929 ------------NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGA 996 (1065)
Q Consensus 929 ------------~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~pa 996 (1065)
.+...+||++|.||+|+...++||++++||+|++.+|..+|++.|...+.+++++||+|++||+++|+
T Consensus 410 ~~g~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~agFs~~~pwl~~~~~~~~~nv~~q~~~~~s~~~~~~~Li~lR~~~~~ 489 (570)
T 1m53_A 410 QSGKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPA 489 (570)
T ss_dssp TTTSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHHHHHHHHHHHHHHCHH
T ss_pred hcCCccHHHHhhhhhcccCCCCCCCcccCCCCCCCCcCCCCCCcCCcccccccHHHhhhccchHHHHHHHHHHHHcCCch
Confidence 12234688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEc-cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 997 VRMGDYKIST-PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 997 L~~G~~~~l~-~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
|+.|+++.+. .+++|+||.|..+++.+|||+|+++++++++++.. .+.+++++++..
T Consensus 490 l~~G~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~~---~~~~~~ll~~~~ 547 (570)
T 1m53_A 490 LVYGAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKEYPVRYTLPAN---DAIEEVVIDTQQ 547 (570)
T ss_dssp HHHSEEEESCTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTT---CCEEEEEEESCS
T ss_pred hhccceEEeecCCCCEEEEEEECCCcEEEEEEECCCCCEEEeccCC---CccceEEeecCC
Confidence 9999999874 45689999999989999999999999999998641 122467777653
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=607.10 Aligned_cols=419 Identities=28% Similarity=0.510 Sum_probs=348.5
Q ss_pred cCChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCc
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYD 630 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~ 630 (1065)
.+.+.||+++|||||||++|++++++++|||+ ||+++|||||+||||+|||+||++++..+|||+
T Consensus 9 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~---------------gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~ 73 (589)
T 3aj7_A 9 ETEPKWWKEATFYQIYPASFKDSNDDGWGDMK---------------GIASKLEYIKELGADAIWISPFYDSPQDDMGYD 73 (589)
T ss_dssp GGSCCHHHHCCEEEECGGGSCCSSSSSSCCHH---------------HHHHTHHHHHHHTCSEEEECCCEECCCTTTTSS
T ss_pred CCCccchhhCeEEEEEhHHhcCCCCCCccCHH---------------HHHHHHHHHHHcCCCEEEECCcccCCCCCCCcC
Confidence 34578999999999999999999999999999 999999999999999999999999998889999
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC
Q psy15051 631 ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG 710 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
++||++|||+|||++||++||++|
T Consensus 74 ~~dy~~id~~~Gt~~df~~lv~~~-------------------------------------------------------- 97 (589)
T 3aj7_A 74 IANYEKVWPTYGTNEDCFALIEKT-------------------------------------------------------- 97 (589)
T ss_dssp CSEEEEECTTTCCHHHHHHHHHHH--------------------------------------------------------
T ss_pred cccccccccccCCHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred cccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCC----CCCCCCCCCCc-----------
Q psy15051 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLN----GKPGTPPNNWK----------- 774 (1065)
Q Consensus 711 ~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~d----G~p~~~~~~W~----------- 774 (1065)
|++||+||+|+|+||++.+|+||.++.. ..++|++||+|.++.+ |. ..++++|.
T Consensus 98 ---------h~~Gi~VilD~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~g~-~~~p~~~~~~f~g~~w~~~ 167 (589)
T 3aj7_A 98 ---------HKLGMKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGK-PIPPNNWKSYFGGSAWTFD 167 (589)
T ss_dssp ---------HHTTCEEEEEECCSBCCTTSHHHHHHTTCSSSTTGGGBCEECCSEECTTSC-EECSSCBBCTTSSBSEEEE
T ss_pred ---------HHCCCEEEEEecccccccchhHHHHHhcCCCCCCCCceeecCCcccccccC-CCCCCcccccCCCccceec
Confidence 9999999999999999999999998765 4778999999876431 11 01223321
Q ss_pred ----------------cccCCCHHHHHHHHH-HHHh----------------c---------------------------
Q psy15051 775 ----------------HINITSREVMRSQKD-VVQS----------------F--------------------------- 794 (1065)
Q Consensus 775 ----------------~ln~~n~~v~~~l~~-~lk~----------------~--------------------------- 794 (1065)
.||+.||+||++|.+ +++. +
T Consensus 168 ~~~~~~y~~~f~~~~pdLN~~np~Vr~~l~~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~n 247 (589)
T 3aj7_A 168 EKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDKNSTWQSSDPYTLN 247 (589)
T ss_dssp TTTTEEEECSSSTTCCBBCTTCHHHHHHHHHHHTHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCTTCSSBCCHHHHSS
T ss_pred CCCCeEEECccCCCCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEccccccccccCCCcCCccccccccccccccccc
Confidence 189999999999999 5111 1
Q ss_pred ---------------------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH-------h-hcCCChHHH
Q psy15051 795 ---------------------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK-------F-GATSNAKDL 845 (1065)
Q Consensus 795 ---------------------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~-------~-~~~~~~~~l 845 (1065)
.++++++||.|...+..+..|.+.+ ..++++.|++..... + ....+...+
T Consensus 248 ~~~~~~~l~~~~~~~~~~v~~~~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~l 326 (589)
T 3aj7_A 248 GPRIHEFHQEMNQFIRNRVKDGREIMTVGEMQHASDETKRLYTSAS-RHELSELFNFSHTDVGTSPLFRYNLVPFELKDW 326 (589)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCCCCEEEEEEECCCHHHHHHHHCGG-GCSCSEEEECHHHHTTEETTEEEEECCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHhhccC-CCccceeeehhhhhhhcccccccccCCCCHHHH
Confidence 2357999999988766666666532 245778888776532 1 134567888
Q ss_pred HHHHHHHhhcCC-CCCcccccccCCChhhHhhhcCH-------HHHHHHHHHHHhCCCeEEEEcccccCccCC-CCccCC
Q psy15051 846 ENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRYSP-------DLVDAMNMLTLLLPGTAVTFAGDELGMESP-ILRYED 916 (1065)
Q Consensus 846 ~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~~~-------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~-~~~~~~ 916 (1065)
...+..+...++ ...+..+|++|||++|+.++++. +++|++++++||+||+|+||||||+||.+. ...+++
T Consensus 327 ~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~~~~~~~~~~k~~~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~ 406 (589)
T 3aj7_A 327 KIALAELFRYINGTDCWSTIYLENHDQPRSITRFGDDSPKNRVISGKLLSVLLSALTGTLYVYQGQELGQINFKNWPVEK 406 (589)
T ss_dssp HHHHHTTTGGGTTSSCCCEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCSCCGGG
T ss_pred HHHHHHHHHhcccCCCcccccccCCCCcchHHHhCCCchhhHHHHHHHHHHHHHHCCCCcEEEcChhcccCCCCCCCHHH
Confidence 888877665555 55677789999999999999874 478999999999999999999999999986 346678
Q ss_pred CCCcccccccc-----------------ccccccccCCCCCcCCCCccc-ccCCCCCC--CCCCCCCC-cccccHHHhhc
Q psy15051 917 QRDPEGYIFGK-----------------DNYLKVCRDGSRVPFQWNDQE-NAGFSKAK--SWLPVHPN-YWTLNAQAEKK 975 (1065)
Q Consensus 917 ~~Dp~~~~~~~-----------------~~~~~~~rd~~R~~m~W~~~~-~~gFs~~~--~wl~~~~~-~~~~~~~~~~~ 975 (1065)
+.||++++..+ +.+...+||++|.||+|+... ++||+++. ||+|++++ |..+|++.|..
T Consensus 407 ~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~rd~~R~pm~W~~~~~~~GFs~~~~~pwl~~~~~~~~~~nv~~q~~ 486 (589)
T 3aj7_A 407 YEDVEIRNNYNAIKEEHGENSEEMKKFLEAIALISRDHARTPMQWSREEPNAGFSGPSAKPWFYLNDSFREGINVEDEIK 486 (589)
T ss_dssp CCCHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHCGGGGTSCCCCCSCTTTTTSSCTTCCCSSCCCGGGGGTCSHHHHHH
T ss_pred hcCHHhhhhhHHHhhcCCcccchhhhhhhhhcccCCCCCccceecCCCCCCCCCCCCCCCCCccCCccccccccHHHHhh
Confidence 88998776543 122345799999999999988 99999986 99999999 99999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccc-C-CCeEEEccCC-cEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVR-M-GDYKISTPNN-YVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~-~-G~~~~l~~~~-~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
++++++++||+|++|||++|+|+ . |+++.+..++ +|+||.|..++++++||+|+++++++++|+... ...++++
T Consensus 487 d~~Sl~~~yr~Li~lRk~~~~l~~~~G~~~~~~~~~~~v~ay~R~~~~~~~lvv~N~s~~~~~~~l~~~~---~~~~~l~ 563 (589)
T 3aj7_A 487 DPNSVLNFWKEALKFRKAHKDITVYGYDFEFIDLDNKKLFSFTKKYNNKTLFAALNFSSDATDFKIPNDD---SSFKLEF 563 (589)
T ss_dssp CTTSHHHHHHHHHHHHHHTHHHHTSCEEEEEESTTCSSEEEEEEEETTEEEEEEEECSSSCEECCCTTCC---TTEEEEE
T ss_pred CCCcHHHHHHHHHHHHhcChhhhccCCceEEEecCCCcEEEEEEEcCCCEEEEEEeCCCCCEEeecCccc---ccceEEe
Confidence 99999999999999999999999 8 9999988764 899999998889999999999999998886431 2235555
Q ss_pred cc
Q psy15051 1053 SS 1054 (1065)
Q Consensus 1053 ~s 1054 (1065)
++
T Consensus 564 ~~ 565 (589)
T 3aj7_A 564 GN 565 (589)
T ss_dssp ES
T ss_pred ec
Confidence 54
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-63 Score=596.18 Aligned_cols=416 Identities=29% Similarity=0.575 Sum_probs=343.8
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISN 633 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~d 633 (1065)
|.||+++|||||+|++|++++++++|||+ ||+++|||||+||||+|||+||+++++.+|||+++|
T Consensus 3 ~~W~~~~viYqi~~~~F~~~~~dg~Gdl~---------------gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~d 67 (543)
T 2zic_A 3 KHWWHKATVYQIYPKSFMDTNGDGIGDLK---------------GITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIAN 67 (543)
T ss_dssp CCGGGGCCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSE
T ss_pred ccchhhCeEEEEEcHHhcCCCCCCccCHH---------------HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCccc
Confidence 68999999999999999999999999999 999999999999999999999999998889999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|||+|||++||++||++|
T Consensus 68 y~~idp~~Gt~~df~~lv~~~----------------------------------------------------------- 88 (543)
T 2zic_A 68 YEAIADIFGNMADMDNLLTQA----------------------------------------------------------- 88 (543)
T ss_dssp EEEECGGGCCHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ccccCcccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCC-CCCCCCCCc-----------------
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGK-PGTPPNNWK----------------- 774 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~-p~~~~~~W~----------------- 774 (1065)
|++||+||+|+|+||++.+|+||.++..+ .++|.+||+|.+..... .......|.
T Consensus 89 ------h~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~ 162 (543)
T 2zic_A 89 ------KMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQ 162 (543)
T ss_dssp ------HTTTCEEEEEECCSBCCTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTS
T ss_pred ------HHCCCEEEEEEecCcccccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCC
Confidence 99999999999999999999999988654 67899999987631110 001112231
Q ss_pred -cccCCCHHHHHHHHHHHHh----------------c----------------------------CCceEEEeecCCCCh
Q psy15051 775 -HINITSREVMRSQKDVVQS----------------F----------------------------PLILMIITEAYSPSL 809 (1065)
Q Consensus 775 -~ln~~n~~v~~~l~~~lk~----------------~----------------------------~~~~~ligE~~~~~~ 809 (1065)
.||+.||+|+++|.++++. + .++++++||.|...+
T Consensus 163 pdLN~~np~Vr~~i~~~~~~Wl~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~vgE~~~~~~ 242 (543)
T 2zic_A 163 PDLNWENANLRQKIYDMMNFWIDKGIGGFRMDVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTVGETWGATP 242 (543)
T ss_dssp CBBCTTCHHHHHHHHHHHHHHHTTTCCEEEETTGGGTTCBGGGTBCSSCTTHHHHHHHHHHHTGGGSCCEEEEECTTCCH
T ss_pred CccCcCCHHHHHHHHHHHHHHHhcCCCEEEECCccceeecCCCccccccHHHHHHHHHHHHHHhccCCeEEEeeecCCCH
Confidence 1999999999999998321 1 236899999998767
Q ss_pred HHHhhhccCCCCccccccccHHHHHH--h------h--cCCChHHHHHHHHHHhhcCC-CCCcccccccCCChhhHhhhc
Q psy15051 810 EKVAKYYGTGDTQGTHLSVNYEIMNK--F------G--ATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRY 878 (1065)
Q Consensus 810 ~~~~~y~~~~~~~~~d~~~~~~~~~~--~------~--~~~~~~~l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~ 878 (1065)
.....|.+.+ ..+++++|++.+... . . ...+..++...+..+...++ ...+..+|++|||+.|+.+++
T Consensus 243 ~~~~~y~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~ 321 (543)
T 2zic_A 243 EIAKQYSNPV-NHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQTELELGQGWNSLFWNNHDLPRVLSIW 321 (543)
T ss_dssp HHHHHHHCGG-GCSCSEEECCTTGGGGBCTTSCTTSBCSSCCHHHHHHHHHHHHHHSCTTTCCCEECSCCTTSCCHHHHT
T ss_pred HHHHHHhCCC-CCccceEecchhhccccccccccccccCCCCHHHHHHHHHHHHHhcccCCCeeeeeecCCCCccchhhc
Confidence 7777777642 245778877765421 0 0 23456778888877766665 556777899999999999998
Q ss_pred CHH------HHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCccccccccc-------------cccccccCCC
Q psy15051 879 SPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKD-------------NYLKVCRDGS 938 (1065)
Q Consensus 879 ~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~-------------~~~~~~rd~~ 938 (1065)
+.+ ++|++++++|++||+|+||||||+|+.+.. ...+++.||+.++..+. .+...+|+.+
T Consensus 322 ~~~~~~~~~~~k~a~~~llt~pG~P~iy~G~E~G~~~~~~~~~~~~~D~~~~n~~~~~~~~g~~~~~~~~~~~~~~rd~~ 401 (543)
T 2zic_A 322 GNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMDSIRMIGRDNA 401 (543)
T ss_dssp SCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCCSSTTCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHCGGGG
T ss_pred CCchhhhHHHHHHHHHHHHhCCCceEEEeccccCCCCCCCCCHHHcCCHHHhhhHHHHHhcCCCHHHHHHHHHhhCCCCC
Confidence 753 688999999999999999999999999853 34567788876654421 1223468889
Q ss_pred CCcCCCCcccccCCCCC-CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEE
Q psy15051 939 RVPFQWNDQENAGFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRT 1017 (1065)
Q Consensus 939 R~~m~W~~~~~~gFs~~-~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~ 1017 (1065)
|.||+|+...++||+++ +||++++++|..+|++.|...+.+++++||+|++|||++|+|+.|+++.+..+++|+||.|.
T Consensus 402 R~pm~W~~~~~agFs~~~~pwl~~~~~y~~~nv~~q~~~~~s~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~a~~R~ 481 (543)
T 2zic_A 402 RTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPTADKVFAYLRK 481 (543)
T ss_dssp CSCCCCCSSGGGGTCSSSSCSSCCCGGGGTSCHHHHHHSTTSHHHHHHHHHHHHHHCTHHHHCCCEECCCCTTEEEEEEE
T ss_pred cCCcccCCCCCCCCCCCCCCCcCCCCCcCccCHHHHHhchhhHHHHHHHHHHHHhcChhhhcCceEEecCCCcEEEEEEE
Confidence 99999999999999998 99999999999999999999999999999999999999999999999988555689999999
Q ss_pred cCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccC
Q psy15051 1018 EGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSV 1055 (1065)
Q Consensus 1018 ~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~ 1055 (1065)
.+++.++||+|+++++++++++. ...++++++.
T Consensus 482 ~~~~~~lvv~N~s~~~~~~~l~~-----~~~~~l~~~~ 514 (543)
T 2zic_A 482 VREERYLIVVNVSDQEEVLEIDV-----DKQETLISNT 514 (543)
T ss_dssp ETTEEEEEEEECSSSCEECCCCC-----CEEEEEEESS
T ss_pred eCCcEEEEEEECCCCCEEEecCC-----CcceEEEecC
Confidence 88999999999999999988864 1225666543
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-63 Score=600.49 Aligned_cols=403 Identities=33% Similarity=0.675 Sum_probs=339.3
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISN 633 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~d 633 (1065)
|.||+++|||||||++|++++++++|||+ ||+++|||||+||||+|||+||++++..+|||+++|
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gd~~---------------gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~d 67 (555)
T 2ze0_A 3 KTWWKEGVAYQIYPRSFMDANGDGIGDLR---------------GIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISD 67 (555)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSE
T ss_pred hhhhhcCcEEEEEchHhcCCCCCCcCCHH---------------HHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCccc
Confidence 68999999999999999999999999999 999999999999999999999999998889999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|||+|||++||++||++|
T Consensus 68 y~~id~~~Gt~~d~~~lv~~~----------------------------------------------------------- 88 (555)
T 2ze0_A 68 YYAIMDEFGTMDDFDELLAQA----------------------------------------------------------- 88 (555)
T ss_dssp EEEECGGGCCHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ccccCcccCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCCCCCCCCCCCC---------c---------
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNW---------K--------- 774 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~dG~p~~~~~~W---------~--------- 774 (1065)
|++||+||+|+|+||++.+|+||.++.. ..++|.+||+|.+..+|. ++++| .
T Consensus 89 ------h~~Gi~vilD~V~NH~~~~~~~f~~~~~~~~~~~~~~y~~~~~~~g~---~p~~~~~~f~~~~w~~~~~~~~~~ 159 (555)
T 2ze0_A 89 ------HRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGR---EPNNWESIFGGSAWQYDERTGQYY 159 (555)
T ss_dssp ------HHTTCEEEEEEECSBCCTTSHHHHHHHHCSSSTTGGGBCEECCBTTB---CSSCEECTTSSBSEEEETTTTEEE
T ss_pred ------HHCCCEEEEEEecccccchhhHHHHhhcCCCCCccccccccCCCCCC---CCCcccccCCCccceecCCCCcee
Confidence 9999999999999999999999998764 477899999998654443 22222 1
Q ss_pred ---------cccCCCHHHHHHHHHHHHh----------------c-----------------------------------
Q psy15051 775 ---------HINITSREVMRSQKDVVQS----------------F----------------------------------- 794 (1065)
Q Consensus 775 ---------~ln~~n~~v~~~l~~~lk~----------------~----------------------------------- 794 (1065)
.||+.||+|+++|.++++. +
T Consensus 160 ~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~~gvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 2ze0_A 160 LHIFDVKQPDLNWENSEVRQALYEMVNWWLDKGIDGFRIDAISHIKKKPGLPDLPNPKGLKYVPSFAGHMNQPGIMEYLR 239 (555)
T ss_dssp ECSSCTTCCBBCTTCHHHHHHHHHHHHHHHHHTCCEEEEESGGGSSCCTTCCCCC----CCSEECHHHHSSCTTHHHHHH
T ss_pred ecccCccCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEccccccccccccccCCcccccccccccccccCcHHHHHHHH
Confidence 1899999999999998322 0
Q ss_pred --------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhh----cCCChHHHHHHHHHHhhcCCCCCcc
Q psy15051 795 --------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG----ATSNAKDLENVVNAYLKSLPSGKWS 862 (1065)
Q Consensus 795 --------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~ 862 (1065)
.++++++||.|...+.....|.+.. ..+++++|++.+...+. ...+..++...+..+....+...+.
T Consensus 240 ~~r~~v~~~~~~~~vgE~~~~~~~~~~~y~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 318 (555)
T 2ze0_A 240 ELKEQTFARYDIMTVGEANGVTVDEAEQWVGEE-NGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQKGLENRGWN 318 (555)
T ss_dssp HHHHHTGGGSSCEEEEECTTCCTTTTHHHHCSS-SCSCSEEECCTTCCCCCCCC--CCCHHHHHHHHHHHHHHHTTTCCB
T ss_pred HHHHHhhccCCeEEEeccCCCCHHHHHHHhccc-cccccceeehHHHhhhhccccCCCCHHHHHHHHHHHHhhccCCCce
Confidence 1157899999976566666777532 35678888877653322 3456778888888777666666777
Q ss_pred cccccCCChhhHhhhcCHH------HHHHHHHHHHhCCCeEEEEcccccCccCCCC-ccCCCCCccccccccc-------
Q psy15051 863 SWMVGGHSITRIATRYSPD------LVDAMNMLTLLLPGTAVTFAGDELGMESPIL-RYEDQRDPEGYIFGKD------- 928 (1065)
Q Consensus 863 ~~flenHD~~Rl~s~~~~~------~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~-~~~~~~Dp~~~~~~~~------- 928 (1065)
.+|++|||++|+.++++.+ +++++++++|++||+|+||||||+|+.+... ..+++.||+..+....
T Consensus 319 ~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~~~~l~t~pG~P~iy~G~E~G~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~ 398 (555)
T 2ze0_A 319 ALFLENHDLPRSVSTWGNDRDYWAESAKALGALYFFMQGTPFIYQGQEIGMTNVRFDDIRDYRDVSALRLYELERAKGRT 398 (555)
T ss_dssp EECSCCTTSCCHHHHTSCSSSSHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCSHHHHC-----------
T ss_pred eeeecCCCCcchhhhhCCchhhhHHHHHHHHHHHHhCCCceEEEeceecCcCCCCCCCHHHccCHHhhcchhhhhhcCCc
Confidence 7899999999999998753 4889999999999999999999999998642 2456778876554321
Q ss_pred ------cccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe
Q psy15051 929 ------NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002 (1065)
Q Consensus 929 ------~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~ 1002 (1065)
.....+||.+|.||+|+...++||++++||+|++++|..+|++.|..++.+++++||+|++|||++|+|+.|++
T Consensus 399 ~~~~~~~~~~~~rd~~R~pm~W~~~~~~gFs~~~pWl~~~~~~~~~nv~~q~~~~~s~~~~y~~Li~lRk~~~al~~G~~ 478 (555)
T 2ze0_A 399 HEEAMTIIWKTGRDNSRTPMQWSGASNAGFTTGTPWIKVNENYRTINVEAERRDPNSVWSFYRQMIQLRKANELFVYGTY 478 (555)
T ss_dssp ------CHHHHCGGGGTSCCCCCSSGGGGSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCTHHHHSEE
T ss_pred HHHHHhhhhcccCCCCcCCcccCCCCCCCCcCCCCCccCCCcccccCHHHHhhccccHHHHHHHHHHHHcCCchhhccce
Confidence 12334688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc-cCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1003 KIST-PNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1003 ~~l~-~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
+.+. .+++|+||.|..++++++||+|+++++++++++.
T Consensus 479 ~~~~~~~~~v~a~~R~~~~~~~lvv~N~s~~~~~~~l~~ 517 (555)
T 2ze0_A 479 DLLLENHPSIYAYTRTLGRDRALVVVNLSDRPSLYRYDG 517 (555)
T ss_dssp EEESTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECTT
T ss_pred EEeecCCCcEEEEEEEcCCceEEEEEECCCCCEEEeccc
Confidence 9875 4568999999998999999999999999999873
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=536.48 Aligned_cols=371 Identities=27% Similarity=0.505 Sum_probs=304.3
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHH--------HHcCcCEEEeCCCCcCCCCCCCC
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYL--------KELGVETLWLTPFYSGPNGDIGY 629 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYL--------k~LGvnaI~L~PI~~~~~~~~GY 629 (1065)
+++|||||||++|++++++++|||+ ||+++|||| |+||||+||||||+++++. |||
T Consensus 3 ~~~viYqi~~~~F~~~~~~g~Gdl~---------------gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~-~GY 66 (488)
T 1wza_A 3 KHGTYYEIFVRSFYDSDGDGIGDLK---------------GIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSY-HGY 66 (488)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHH---------------HHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSS-SCC
T ss_pred CCcEEEEEEChhhcCCCCCCcCCHH---------------HHHHhhhhhhccccchhhhcCccEEEECCcccCCCC-CCc
Confidence 6789999999999999999999999 999999999 9999999999999999876 999
Q ss_pred cCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCcc
Q psy15051 630 DISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA 709 (1065)
Q Consensus 630 ~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 709 (1065)
++.||++|||+|||++||++||++|
T Consensus 67 d~~dy~~idp~~Gt~~d~~~Lv~~a------------------------------------------------------- 91 (488)
T 1wza_A 67 DVTDYYKINPDYGTLEDFHKLVEAA------------------------------------------------------- 91 (488)
T ss_dssp SCSEEEEECGGGCCHHHHHHHHHHH-------------------------------------------------------
T ss_pred CcccccccCcccCCHHHHHHHHHHH-------------------------------------------------------
Confidence 9999999999999999999999999
Q ss_pred CcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCC--CC-CCCCCCc-----------
Q psy15051 710 GNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGK--PG-TPPNNWK----------- 774 (1065)
Q Consensus 710 ~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~--p~-~~~~~W~----------- 774 (1065)
|++||+||+|+|+||++.+|+||.++..+ .++|++||+|.+...+. +. .....|.
T Consensus 92 ----------H~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~f 161 (488)
T 1wza_A 92 ----------HQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYF 161 (488)
T ss_dssp ----------HHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECSS
T ss_pred ----------HHCCCEEEEEeccccccCccHhhhhhhcCCCCCCcCeeecCCCCCCCCCccccCCCcccccCCceEEecc
Confidence 99999999999999999999999988754 67899999987642111 00 0111232
Q ss_pred -----cccCCCHHHHHHHHHHHHh---------------------------------------cCCceEEEeecCCCChH
Q psy15051 775 -----HINITSREVMRSQKDVVQS---------------------------------------FPLILMIITEAYSPSLE 810 (1065)
Q Consensus 775 -----~ln~~n~~v~~~l~~~lk~---------------------------------------~~~~~~ligE~~~~~~~ 810 (1065)
.||+.||+|+++|.++++. ..| ++++||.|.. +.
T Consensus 162 ~~~~pdln~~np~Vr~~i~~~~~~Wl~~gvDGfR~Da~~~i~~~~~~~~~~~~~~~~~~~~~~~~p-~~~vgE~~~~-~~ 239 (488)
T 1wza_A 162 WSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKP-VYLVGEVWDI-SE 239 (488)
T ss_dssp CTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSC-CEEEEECCSC-HH
T ss_pred CCCCcccccCCHHHHHHHHHHHHHHHHcCCCChhHhhHhhhccccCcchHHHHHHHHHHHHhhcCC-CEEEEEeCCC-HH
Confidence 2999999999999998332 123 8999999984 77
Q ss_pred HHhhhccCCCCccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCC-----CCCcccccccCCChhhHhhhcCH--
Q psy15051 811 KVAKYYGTGDTQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLP-----SGKWSSWMVGGHSITRIATRYSP-- 880 (1065)
Q Consensus 811 ~~~~y~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~-----~~~~~~~flenHD~~Rl~s~~~~-- 880 (1065)
.+..|++. +++++|++.+...+.. ..+...+...+......++ ...+..+|++|||+.|+.++++.
T Consensus 240 ~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~ 315 (488)
T 1wza_A 240 TVAPYFKY----GFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDR 315 (488)
T ss_dssp HHGGGGTT----TCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCH
T ss_pred HHHHHHhc----CCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhhcccccccceeeeeccCCCcchhhhhhcCCH
Confidence 67777653 3677788777665421 1234456555555433222 23344569999999999999864
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC
Q psy15051 881 DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP 960 (1065)
Q Consensus 881 ~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~ 960 (1065)
++++++++++|++||+|+||||||+|+.+.. .| +.+|.||+|+. ..+++ ..+|.+
T Consensus 316 ~~~~la~~~llt~pG~P~iy~G~E~G~~~~~------~d----------------~~~R~pm~w~~-~~~~~--~~~w~~ 370 (488)
T 1wza_A 316 NKARVAASIYLTLPGNPFIYYGEEIGMRGQG------PH----------------EVIREPFQWYN-GSGEG--ETYWEP 370 (488)
T ss_dssp HHHHHHHHHHTTSSSCCEEETTGGGTCCCCS------SH----------------HHHTCCCCCSS-SCCTT--CCCSSC
T ss_pred HHHHHHHHHHHhCCCCcEEEechhcCccCCC------CC----------------CCCcCCCCCCc-cCCCC--CCCCCC
Confidence 5789999999999999999999999998752 01 12589999965 33332 268999
Q ss_pred CCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
...++...+++.|...+.+++++||+|++||+++|+|+.|+++.+..+++++||.|..+++.++||+|++.++++++++.
T Consensus 371 ~~~~~~~~~v~~q~~~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~a~~R~~~~~~~~v~~N~s~~~~~~~l~~ 450 (488)
T 1wza_A 371 AMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVAS 450 (488)
T ss_dssp CTTTTTTCCHHHHTTCTTSHHHHHHHHHHHHHHCTHHHHSEEEEECCCTTEEEEEEECSSCEEEEEEECSSSCEEEEEES
T ss_pred CCcccccccHhhhccCcHHHHHHHHHHHHHHhcChHhhCCeeEEEcCCCcEEEEEEECCCceEEEEEECCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999998887788999999988889999999999999988864
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-56 Score=527.40 Aligned_cols=368 Identities=22% Similarity=0.396 Sum_probs=300.8
Q ss_pred ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC
Q psy15051 560 TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK 639 (1065)
Q Consensus 560 ~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp 639 (1065)
+|||||||++|++++++++|||+ ||+++|||||+||||+||||||+++++ +|||++.||++|||
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~---------------gi~~~LdyL~~LGv~~I~L~Pi~~~~~-~~GY~~~dy~~idp 64 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFR---------------GLKNAVSYLKELGIDFVWLMPVFSSIS-FHGYDVVDFYSFKA 64 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHH---------------HHHHTHHHHHHTTCCEEEECCCEECSS-SSCCSCSEEEEECT
T ss_pred CeEEEEehHHhcCCCCCCccCHH---------------HHHHhhHHHHHcCCCEEEeCCCcCCCC-CCCCCcccccccCc
Confidence 58999999999999999999999 999999999999999999999999986 59999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhh
Q psy15051 640 DFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESME 719 (1065)
Q Consensus 640 ~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1065)
+|||++|||+||++|
T Consensus 65 ~~Gt~~df~~lv~~a----------------------------------------------------------------- 79 (441)
T 1lwj_A 65 EYGSEREFKEMIEAF----------------------------------------------------------------- 79 (441)
T ss_dssp TTCCHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999999999999
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCC--CC-CCC-CCCc-----------------cccC
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGK--PG-TPP-NNWK-----------------HINI 778 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~--p~-~~~-~~W~-----------------~ln~ 778 (1065)
|++||+||+|+|+||++.+|+||.++....++|++||+|.+...+. +. ... ..|. .||+
T Consensus 80 H~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~w~~~~~~~~y~~~f~~~~pdln~ 159 (441)
T 1lwj_A 80 HDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNY 159 (441)
T ss_dssp HHTTCEEEEEECTTBCCTTCHHHHHHHTTCHHHHTTBCBCCTTSCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCS
T ss_pred HHCCCEEEEEeCCCcccCchHHHHHHhccCCCCcceeeecCCCCCCcccccCCCccccccccCCceEEcccCCCCCccCC
Confidence 9999999999999999999999998876666789999887543111 00 000 1221 2999
Q ss_pred CCHHHHHHHHHHHHh----------------c--------------CC--ceEEEeecCCCChHHHhhhccCCCCccccc
Q psy15051 779 TSREVMRSQKDVVQS----------------F--------------PL--ILMIITEAYSPSLEKVAKYYGTGDTQGTHL 826 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~----------------~--------------~~--~~~ligE~~~~~~~~~~~y~~~~~~~~~d~ 826 (1065)
.||+|+++|.++++. + .. ...++||.|.. +..+..|.+ ++++
T Consensus 160 ~np~V~~~l~~~~~~wl~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~igE~~~~-~~~~~~y~~-----~~~~ 233 (441)
T 1lwj_A 160 DNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAE-ARMVDEHGR-----IFGY 233 (441)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSSSHHHHHHHHHHHTTTCCSEEEECCCSC-HHHHHHHHH-----HHSE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEeChhhhccCCccHHHHHHHHHHHhHhhEEEccCCC-HHHHHHHHH-----hCCE
Confidence 999999999998432 1 11 12399999984 666666654 4677
Q ss_pred cccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC---HHHHHHHHHHHHhCCCeEEEE
Q psy15051 827 SVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS---PDLVDAMNMLTLLLPGTAVTF 900 (1065)
Q Consensus 827 ~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~---~~~~kla~~ll~tlpGiP~Iy 900 (1065)
+|++.+...+.. ..+...+...+..... .......+|++|||+.|+.++++ .++++++++++|++||+|+||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy 311 (441)
T 1lwj_A 234 MLNFDTSHCIKEAVWKENTRVLIESIERAVI--AKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVF 311 (441)
T ss_dssp EECHHHHHHHHHHHHTTCSHHHHHHHHHHTS--SCSSEEEEESCCTTSCCGGGTTTCCCHHHHHHHHHHHHTSSSEEEEE
T ss_pred eEehHHHHHHHHhhccCCHHHHHHHHHHHhc--cCCCceeeeccCCCCCCcccccCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 888877765532 2244566666666543 33445567999999999999986 357899999999999999999
Q ss_pred cccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC--CCCCcccccHHHhhcCCC
Q psy15051 901 AGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP--VHPNYWTLNAQAEKKTKP 978 (1065)
Q Consensus 901 yGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~--~~~~~~~~~~~~~~~~~~ 978 (1065)
||||+|+.+.. ..+ .++.+|.+|+|+...++||+ .+|++ .+.++...+++.|...+.
T Consensus 312 ~G~E~g~~~~~------~~~-------------~~~~~R~~m~W~~~~~~g~~--~~w~~~~~~~~~~~~~v~~q~~~~~ 370 (441)
T 1lwj_A 312 YGDELGMKGVY------QKP-------------NTEVVLDPFPWNESMCVEGQ--TFWKWPAYNGPFSGISVEYQKRDPD 370 (441)
T ss_dssp TTTTTTCCCCC------CSS-------------CGGGGSCCCCSSSSSCSTTC--CCSSCCSSCCSSSSCSHHHHTTCTT
T ss_pred chHhhCCCCCC------CCC-------------CCccccCCcccccCCCCCCC--CCCCCcccccccccCCHHHhhcCcH
Confidence 99999998852 000 13347899999987778874 57877 455678899999999999
Q ss_pred cHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEE
Q psy15051 979 SHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVD 1037 (1065)
Q Consensus 979 ~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~ 1037 (1065)
+++++||+|++||+++|+|+.|+++.+..++++++|.|..+++.++||+|+++++++++
T Consensus 371 ~l~~~~~~L~~lR~~~~al~~g~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~ 429 (441)
T 1lwj_A 371 SILSHTLGWTRFRKENQWIDRAKLEFLCKEDKFLVYRLYDDQHSLKVFHNLSGEEVVFE 429 (441)
T ss_dssp SHHHHHHHHHHHHHHTGGGTTCEEEEEEECSSEEEEEEEETTEEEEEEEECSSSCEEET
T ss_pred HHHHHHHHHHHHHhCChhhhcCceEEEecCCCEEEEEEEeCCcEEEEEEECCCCCeeec
Confidence 99999999999999999999999998887789999999988899999999999988764
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=549.44 Aligned_cols=374 Identities=21% Similarity=0.327 Sum_probs=281.7
Q ss_pred ccCChhhcccceEEEEecccccCcCC-CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCC
Q psy15051 550 RCNQKEWWKNTVIYQILVPSFKDSNN-DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIG 628 (1065)
Q Consensus 550 ~~~~~~ww~~~vIYei~v~~F~d~~~-d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~G 628 (1065)
....|+||+++||||||||||+++++ ++.. .....|+|||+ +||++||||||+||||+||||||+++++. ||
T Consensus 197 ~~~~P~W~~~aViYqI~p~~F~~~~~~~g~~-----~~~~~~~gGdl-~Gi~~kLdYLk~LGvt~I~L~Pif~s~~~-~G 269 (645)
T 4aef_A 197 SIEFPTWVIDRVFYQIMPDKFARSRKIQGIA-----YPKDKYWGGDL-IGIKEKIDHLVNLGINAIYLTPIFSSLTY-HG 269 (645)
T ss_dssp CCCCCGGGGGCCEEEECHHHHCCCSSCC--------------CCCCH-HHHHHTHHHHHHHTCCEEEECCCEEESST-TC
T ss_pred CCCCChhHcCCEEEEEecchhcCCCCCCccc-----CCcCcCCCcCH-HHHHHhhHHHHHcCCCEEEECCCCCCCCC-CC
Confidence 34568999999999999999999875 3320 01123444444 49999999999999999999999999875 99
Q ss_pred CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCc
Q psy15051 629 YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708 (1065)
Q Consensus 629 Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 708 (1065)
|+++||++|||+|||++|||+||++|
T Consensus 270 Yd~~dy~~idp~~Gt~~df~~LV~~a------------------------------------------------------ 295 (645)
T 4aef_A 270 YDIVDYFHVARRLGGDRAFVDLLSEL------------------------------------------------------ 295 (645)
T ss_dssp SSEEEEEEECGGGTCHHHHHHHHHHH------------------------------------------------------
T ss_pred cCccCCCccCcccCCHHHHHHHHHHh------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred cCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCCCCCCCC-----CCCCCc-------
Q psy15051 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGKPGT-----PPNNWK------- 774 (1065)
Q Consensus 709 ~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~dG~p~~-----~~~~W~------- 774 (1065)
|++||+||||+|+||+|.+|+||+++... .++|.+||.+.......+.. ....|.
T Consensus 296 -----------H~~GI~VIlD~V~NHts~~h~wf~~~~~~~~~s~~~d~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 364 (645)
T 4aef_A 296 -----------KRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEFLQILHSKSSWEEKYKKIK 364 (645)
T ss_dssp -----------HHTTCEEEEEECCSBCCTTSHHHHHHHHHSTTCTTGGGBCBSSSSCSCTTHHHHHHHSCGGGTTHHHHH
T ss_pred -----------hhcCCEEEEEecccccccCCchhhhHhhcCCCCCcccccEeccCCCcccccccccCCCccccccccccc
Confidence 99999999999999999999999987643 67899999876542111000 011111
Q ss_pred ----------------cccCCCHHHHHHHHHHHHh----------------------------cCCceEEEeecCCCChH
Q psy15051 775 ----------------HINITSREVMRSQKDVVQS----------------------------FPLILMIITEAYSPSLE 810 (1065)
Q Consensus 775 ----------------~ln~~n~~v~~~l~~~lk~----------------------------~~~~~~ligE~~~~~~~ 810 (1065)
.||+.||+|++++.++++. .++..+++||.|.....
T Consensus 365 ~~~~~y~~~~~~~~~pdLn~~np~V~~~~~~~~~~Wl~~gvDGfR~D~a~~i~~~f~~~~~~~~~~~~~~~gE~~~~~~~ 444 (645)
T 4aef_A 365 SLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFWTNKGVDGFRMDVAHGVPPEVWKEVREALPKEKYLIGEVMDDARL 444 (645)
T ss_dssp HHCCSBCEETTEEEEEBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHSCTTCEEEECCCSCCGG
T ss_pred ccccccccccccccCccccccCHHHHHHHHHHHHHHHhcCCCEEEeccccccchhHHHHHHhhhhccccccccccccchh
Confidence 1899999999999998432 34478999999986322
Q ss_pred HHhhhccCCCCccccccccHHHHHHh-----hcCCChHHHHHHHHHHhhcC-CCCCcccccccCCChhhHhhhcCH-HHH
Q psy15051 811 KVAKYYGTGDTQGTHLSVNYEIMNKF-----GATSNAKDLENVVNAYLKSL-PSGKWSSWMVGGHSITRIATRYSP-DLV 883 (1065)
Q Consensus 811 ~~~~y~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~-~~~~~~~~flenHD~~Rl~s~~~~-~~~ 883 (1065)
+.. ..++..+++.+...+ ........+...+....... +......+|++|||+.|+.++++. +++
T Consensus 445 ----~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~s~~gd~~~~ 516 (645)
T 4aef_A 445 ----WLF----DKFHGVMNYRLYDAILRFFGYEEITAEEFLNELELLSSYYGPAEYLMYNFLDNHDVERFLDIVGDKRKY 516 (645)
T ss_dssp ----GTT----TTCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHGGGGGGCBCCSCCTTSCCHHHHHCCHHHH
T ss_pred ----hhc----cccceecchhHHHHHHHhhhccccchHHHHHHHHHHhhhccccccccccccCCCCCcccccccCCHHHH
Confidence 122 234555565555443 23345566655554433222 223345569999999999999874 578
Q ss_pred HHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCC
Q psy15051 884 DAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHP 963 (1065)
Q Consensus 884 kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~ 963 (1065)
++|++++||+||+||||||||+||.+.. ..+++.+|.||+|+...
T Consensus 517 ~~a~a~llt~pG~P~iyyGdE~G~~~~~--------------------~~~~~~~R~pm~W~~~~--------------- 561 (645)
T 4aef_A 517 VCALVFLMTYKGIPSLFYGDEIGLRGIN--------------------LQGMESSRAPMLWNEEE--------------- 561 (645)
T ss_dssp HHHHHHHHHSSSBCEEETTGGGTCCCEE--------------------ETTEEESCCCCCCCGGG---------------
T ss_pred HHHHHHHHHcCCCcEEECChhhCCCCCC--------------------CCCCccccCCCCCCCcc---------------
Confidence 8999999999999999999999998642 12355689999998632
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEE---EEcCC
Q psy15051 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTET---VDLSD 1040 (1065)
Q Consensus 964 ~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~---v~l~~ 1040 (1065)
.+++++++||+|++|||++|||+.|+++.+..+++++||.|..+++++|||+|+|++++. ++|+.
T Consensus 562 ------------~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~~~~~~~~v~lP~ 629 (645)
T 4aef_A 562 ------------WDQRILEITKTLVKIRKNNKALLFGNFVPVKFKRKFMVYKREHMGERTIVAINYSNSRVKELGITIPE 629 (645)
T ss_dssp ------------SCHHHHHHHHHHHHHHHTCHHHHHCEEEEEEEETTEEEEEEEETTEEEEEEEECSSSCEEETTEEECT
T ss_pred ------------ccHHHHHHHHHHHHHHhcCHHHhcCceEEEEcCCCEEEEEEEeCCCEEEEEEECCCCCcEEEEEecCC
Confidence 235799999999999999999999999999988899999999999999999999986542 45543
Q ss_pred CccCCCcEEEEEccCC
Q psy15051 1041 CIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1041 ~~~~~~~~~v~~~s~~ 1056 (1065)
...++++++.
T Consensus 630 ------~~~~i~~~d~ 639 (645)
T 4aef_A 630 ------YSGVIINEDK 639 (645)
T ss_dssp ------TEEEEEETTE
T ss_pred ------CCCeEECCCE
Confidence 3455665543
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=539.33 Aligned_cols=373 Identities=26% Similarity=0.461 Sum_probs=299.7
Q ss_pred Chhhccc----ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCC
Q psy15051 553 QKEWWKN----TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIG 628 (1065)
Q Consensus 553 ~~~ww~~----~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~G 628 (1065)
++..|++ +|||||||++|+++++++.|||+ ||+++|+|||+|||++|||+||+++++. ||
T Consensus 27 ~~~~w~~~~~~~viY~i~~~~f~~~~~~~~G~~~---------------g~~~~l~yl~~lGv~~i~l~Pi~~~~~~-~g 90 (669)
T 3k8k_A 27 SPDTWDETKRADISYQLLLYSFADSDGDGYGDLN---------------GVTQKLDYLNQLGVKALWLSPIHPCMSY-HG 90 (669)
T ss_dssp CCCCCCSCCCSCCEEEECTTTSCCSSSSSSCCHH---------------HHHTTHHHHHTTTCSEEEECCCSSBSST-TC
T ss_pred CChhhcccCcCcEEEEEEhHHhcCCCCCCCcCHH---------------HHHHHHHHHHHcCCCEEEecccccCCCC-CC
Confidence 3455665 99999999999999999999999 9999999999999999999999999876 99
Q ss_pred CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCc
Q psy15051 629 YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708 (1065)
Q Consensus 629 Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 708 (1065)
|++.||++|||+|||++||++||++|
T Consensus 91 Y~~~dy~~i~~~~Gt~~d~~~lv~~~------------------------------------------------------ 116 (669)
T 3k8k_A 91 YDVTDYTKVNPQLGTESDFDRLVTEA------------------------------------------------------ 116 (669)
T ss_dssp CSBSCTTSCCTTTCCHHHHHHHHHHH------------------------------------------------------
T ss_pred CCcccccccccccCCHHHHHHHHHHH------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred cCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCC-----------------CCC----
Q psy15051 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLN-----------------GKP---- 766 (1065)
Q Consensus 709 ~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~d-----------------G~p---- 766 (1065)
|++||+||+|+|+||++.+|+||+++..+ .++|.+||+|.+... |.+
T Consensus 117 -----------h~~gi~vi~D~V~NH~~~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 185 (669)
T 3k8k_A 117 -----------HNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEW 185 (669)
T ss_dssp -----------HHTTCEEEEEECCSEEETTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGE
T ss_pred -----------HHcCCEEEEEECcccCCCcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCccc
Confidence 99999999999999999999999998876 789999999882110 000
Q ss_pred -------C-----------C---C--------------------------------------------------------
Q psy15051 767 -------G-----------T---P-------------------------------------------------------- 769 (1065)
Q Consensus 767 -------~-----------~---~-------------------------------------------------------- 769 (1065)
. . +
T Consensus 186 ~s~f~g~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (669)
T 3k8k_A 186 FQVSDETAAVKGLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWG 265 (669)
T ss_dssp EESCSCCCCEEEEEEEEEECTTTTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSC
T ss_pred ccccCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 0
Q ss_pred -------CC--------------------------------------------------CCcc-ccCC-------CHHHH
Q psy15051 770 -------PN--------------------------------------------------NWKH-INIT-------SREVM 784 (1065)
Q Consensus 770 -------~~--------------------------------------------------~W~~-ln~~-------n~~v~ 784 (1065)
.. .|.. ||+. ||+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~~~~qPDLN~~~~~~~~~Np~V- 344 (669)
T 3k8k_A 266 LLIRTSNASFWPSGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAY- 344 (669)
T ss_dssp EEEESCCSSSCCTTCEEBBSSTTCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTSCTTEEEBCCCSGGGGGGCHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccCCccCCCCCccCCCCHHH-
Confidence 00 1122 9999 9999
Q ss_pred HHHHHHHH---------------------------------------h------cCCceEEEeecCCCChHHHhhhccCC
Q psy15051 785 RSQKDVVQ---------------------------------------S------FPLILMIITEAYSPSLEKVAKYYGTG 819 (1065)
Q Consensus 785 ~~l~~~lk---------------------------------------~------~~~~~~ligE~~~~~~~~~~~y~~~~ 819 (1065)
++|.++++ + ..++++++||+|.. +.....|+.
T Consensus 345 ~~l~dvl~~Wl~~GVDGFRlDaa~~i~k~~~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~-~~~~~~y~~-- 421 (669)
T 3k8k_A 345 QAIADAAKGWIARGVDGLRLDAVKHIYHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSE-YDKVAPYYK-- 421 (669)
T ss_dssp HHHHHHHHHHHTTTCCEEEETTGGGSSSCSSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSC-HHHHGGGGG--
T ss_pred HHHHHHHHHHHHCCCCEEEEechhhhhhccCCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCC-HHHHHHHhc--
Confidence 99998822 1 23468999999985 666666663
Q ss_pred CCccccccccHHHHHHhh---cCCChHHHHHHHHHHhhcCCC---CCcccccccCCChhhHhhhcC--HHHHHHHHHHHH
Q psy15051 820 DTQGTHLSVNYEIMNKFG---ATSNAKDLENVVNAYLKSLPS---GKWSSWMVGGHSITRIATRYS--PDLVDAMNMLTL 891 (1065)
Q Consensus 820 ~~~~~d~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~---~~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~ 891 (1065)
+++++|+|.+...+. .......+...+..+...++. ..+..+|++|||++|+.++++ .+++++|++++|
T Consensus 422 ---~l~~vfnF~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Fl~NHD~~R~~s~~g~d~~~~kla~alll 498 (669)
T 3k8k_A 422 ---GLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLL 498 (669)
T ss_dssp ---TCSEEECHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTCTTCEEECCSCCTTSCCHHHHTTTCHHHHHHHHHHHH
T ss_pred ---cCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcccceeeeeccCCCCCccccccCCCHHHHHHHHHHHH
Confidence 478888888766442 122333455555544433322 223567999999999999986 457899999999
Q ss_pred hCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCC----Cccc
Q psy15051 892 LLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHP----NYWT 967 (1065)
Q Consensus 892 tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~----~~~~ 967 (1065)
++||+|+||||||+||.+.. ..+++.+|.||+|+.. + .+|++... ++..
T Consensus 499 tlpG~P~IYyGdEiGm~~~~--------------------~~~d~~~Rtpm~W~~~----~---~~w~~~~~n~~~~~~~ 551 (669)
T 3k8k_A 499 TSAGHPYIYYGEELGLYGTK--------------------DNGDEYVRSPMLWGDS----Y---TTNYTDKTDATVSKNV 551 (669)
T ss_dssp TSSSCCEEETTTTTTCCCCS--------------------TTCGGGGSCCCCCSST----T---CCCCCSCCCTTHHHHS
T ss_pred hCCCccEEEecccccccCCC--------------------CCCCccccCCccCCCC----C---CCCCCccccccccccc
Confidence 99999999999999999852 0113458999999864 2 23544444 4588
Q ss_pred ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEE---Ecc-C----CcEEEEEEEcCCcEEEEEEECCCCcEEEEcC
Q psy15051 968 LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKI---STP-N----NYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 968 ~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~---l~~-~----~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~ 1039 (1065)
+|++.|..++.+++++||+|++|||++|+|+.|+++. +.. + ++|+||.|..+++++|||+|+++++++++++
T Consensus 552 ~nv~~q~~d~~sll~~yr~Li~LRk~~paL~~G~~~~~~~~~~~~~~~~~~v~ay~R~~~~e~~lVv~N~s~~~~~v~l~ 631 (669)
T 3k8k_A 552 KTVADQQADTHSLLNIYFSLTRLRNTYPALAEGNMTKHSVYNESQEKDYKPIAAWYMTKDNEKLLVIHNFGGTAMQLPLT 631 (669)
T ss_dssp CCHHHHHTCTTCHHHHHHHHHHHHHHCHHHHHCEEEECSSSSGGGTTTCTTEEEEEEEETTEEEEEEEECSSSCEEEEEC
T ss_pred ccHHHhhcCcHHHHHHHHHHHHHHHhChhhcCCceEEeeeeeccCccCcCCEEEEEEEeCCCEEEEEEeCCCCCEEEeCC
Confidence 9999999999999999999999999999999999984 332 3 6799999999999999999999999999987
Q ss_pred C
Q psy15051 1040 D 1040 (1065)
Q Consensus 1040 ~ 1040 (1065)
.
T Consensus 632 ~ 632 (669)
T 3k8k_A 632 D 632 (669)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=519.79 Aligned_cols=363 Identities=23% Similarity=0.422 Sum_probs=276.8
Q ss_pred CChhhcccceEEEEecccc-cCcCC--CCCCCCC-----CcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC
Q psy15051 552 NQKEWWKNTVIYQILVPSF-KDSNN--DGIGDLR-----GKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP 623 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F-~d~~~--d~~Gdl~-----g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~ 623 (1065)
..|+||+++|||||+|||| .+++. |..|+.. ..+....|++||+ +||+++|||||+||||+|||+||++++
T Consensus 4 ~~~~W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl-~gi~~~LdyL~~LGv~~I~L~Pi~~~~ 82 (488)
T 2wc7_A 4 QTPDWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDL-WGIMEDLDYIQNLGINAIYFTPIFQSA 82 (488)
T ss_dssp CCCHHHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCH-HHHHHTHHHHHHHTCCEEEESCCEEEC
T ss_pred CCCCccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCH-HHHHHhhHHHHHcCCCEEEECCCCCCC
Confidence 4579999999999999999 67652 2212100 0011123445555 599999999999999999999999998
Q ss_pred CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCC
Q psy15051 624 NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSG 703 (1065)
Q Consensus 624 ~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 703 (1065)
++ |||++.||++|||+|||++|||+||++|
T Consensus 83 ~~-~GYd~~dy~~idp~~Gt~~df~~Lv~~a------------------------------------------------- 112 (488)
T 2wc7_A 83 SN-HRYHTHDYYQVDPMLGGNEAFKELLDAA------------------------------------------------- 112 (488)
T ss_dssp TT-CTTSEEEEEEECGGGTHHHHHHHHHHHH-------------------------------------------------
T ss_pred CC-CCCCCcCccccCcccCCHHHHHHHHHHH-------------------------------------------------
Confidence 75 9999999999999999999999999999
Q ss_pred CCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCCCCCCC---Cc---
Q psy15051 704 NQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPGTPPNN---WK--- 774 (1065)
Q Consensus 704 ~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~~~~~~---W~--- 774 (1065)
|++||+||+|+|+||++.+|+||+++..+ .++|++||++.+.. ...+...+.+ |.
T Consensus 113 ----------------H~~Gi~VilD~V~NH~s~~~~~f~~~~~~~~~s~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
T 2wc7_A 113 ----------------HQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGWAGNR 176 (488)
T ss_dssp ----------------HHTTCEEEEEECCSBCCSSSHHHHHHHHHGGGCTTGGGBCBCSSSCCSSCTTSCCCBCBGGGCT
T ss_pred ----------------HHCCCEEEEEeCCCcCCCcCHHHHHHHhcCCCCCCCCceeecCCCCCCCCCCCCCCccccCCCC
Confidence 99999999999999999999999987653 57899999987521 1110000122 22
Q ss_pred ---cccCCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCCChHHHhhhccCC
Q psy15051 775 ---HINITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSPSLEKVAKYYGTG 819 (1065)
Q Consensus 775 ---~ln~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~ 819 (1065)
.||+.||+||++|.++++ +..|+++++||.|.... .|+..
T Consensus 177 ~~pdln~~np~vr~~i~~~~~~Wl~~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~p~~~~vgE~~~~~~----~~~~~- 251 (488)
T 2wc7_A 177 ALPEFNHDNPEVREYIMEIAEYWLKFGIDGWRLDVPFEIKTPGFWQEFRDRTKAINPEAYIVGEVWGDSR----QWLDG- 251 (488)
T ss_dssp TSBBBCTTSHHHHHHHHHHHHHHHHHTCCEEEESSGGGCCCTTHHHHHHHHHHHHCTTCEEEECCCSCCG----GGCSS-
T ss_pred CcCeeccCCHHHHHHHHHHHHHHHHCCCCEEEEecccccChHHHHHHHHHHHHhhCCCeEEEEEecCCcH----HhhcC-
Confidence 299999999999999822 23458999999997632 34432
Q ss_pred CCccccccccHHHHHHh----hc-CC----------------ChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhh
Q psy15051 820 DTQGTHLSVNYEIMNKF----GA-TS----------------NAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIAT 876 (1065)
Q Consensus 820 ~~~~~d~~~~~~~~~~~----~~-~~----------------~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s 876 (1065)
.+++..+++.+...+ .. .. +...+...+......++.. ....+|++|||+.|+++
T Consensus 252 --~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~ 329 (488)
T 2wc7_A 252 --TQFDGVMNYLFAGPTIAFAAGDRVVLEQVQSRDYQPYPPLFAAEYATKIQEVLQLYPWEIQLTQLNLLASHDTARLMT 329 (488)
T ss_dssp --SSCSEEEEHHHHHHHHHHHTGGGCCGGGCCTTTCCCCSCCCHHHHHHHHHHHHTSSCHHHHTTCEECSCCTTSCCHHH
T ss_pred --CCcCceeCchHHHHHHHHHhcCccccccccccccccccCCCHHHHHHHHHHHHHhccchhhcceeEeccccchhhHHH
Confidence 357777777665543 22 11 5567777777666555431 12234999999999999
Q ss_pred hcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCC
Q psy15051 877 RYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954 (1065)
Q Consensus 877 ~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~ 954 (1065)
+++. ++++++++++|++||+|+||||||+|+.+.. ||. +|.+|+ +..
T Consensus 330 ~~~~~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~-------d~~----------------~r~~~~-~~~------- 378 (488)
T 2wc7_A 330 IAGGDIASVELSTLLLLTFPGAPSIYYGDEVGLPGGI-------DPD----------------SRRGFP-LEA------- 378 (488)
T ss_dssp HTTTCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCC-------C--------------------CCCT-TC--------
T ss_pred hcCCcHHHHHHHHHHHHhCCCCcEEEEeeccCcCCCC-------Cch----------------hhcCCC-Ccc-------
Confidence 9864 6789999999999999999999999998752 332 567776 321
Q ss_pred CCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcE
Q psy15051 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034 (1065)
Q Consensus 955 ~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~ 1034 (1065)
.| ..+++++||+|++|||++|+|+.|+++.+..+++++||.|..+++.++||+|++.+++
T Consensus 379 --~~------------------~~~~~~~~~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R~~~~~~~~v~~N~~~~~~ 438 (488)
T 2wc7_A 379 --NW------------------NQEIFNTHRQLITIRQTYPALRTGDYQVLYAQGQLYLFARTLGTEELIIAINAGTSSA 438 (488)
T ss_dssp --CC------------------CHHHHHHHHHHHHHHHHCTHHHHSEEEEEEEETTEEEEEEEETTEEEEEEEECSSSCE
T ss_pred --cc------------------CHHHHHHHHHHHHHHhhCccccCCCeEEEecCCCEEEEEEECCCCEEEEEEECCCCCE
Confidence 11 3479999999999999999999999998887778999999988999999999999998
Q ss_pred EEEcC
Q psy15051 1035 TVDLS 1039 (1065)
Q Consensus 1035 ~v~l~ 1039 (1065)
+++++
T Consensus 439 ~~~l~ 443 (488)
T 2wc7_A 439 TANVD 443 (488)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88875
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=535.19 Aligned_cols=365 Identities=23% Similarity=0.414 Sum_probs=287.0
Q ss_pred ccCChhhcccceEEEEecccccCcCC--CCCCCCC-CcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCC
Q psy15051 550 RCNQKEWWKNTVIYQILVPSFKDSNN--DGIGDLR-GKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGD 626 (1065)
Q Consensus 550 ~~~~~~ww~~~vIYei~v~~F~d~~~--d~~Gdl~-g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~ 626 (1065)
....|+||+++|||||+||||+++++ +..+... +.+....|++||+ +||+++|||||+||||+||||||++++++
T Consensus 216 ~~~~p~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl-~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~- 293 (696)
T 4aee_A 216 GVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDL-AGIMKHIDHLEDLGVETIYLTPIFSSTSY- 293 (696)
T ss_dssp BCSSCCTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCH-HHHHTTHHHHHHHTCCEEEECCCEEESSS-
T ss_pred CCCCcchhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCH-HHHHHHhHHHHHcCCCEEEECCcccCCCC-
Confidence 45678999999999999999999873 2111110 0111223444544 59999999999999999999999999886
Q ss_pred CCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCC
Q psy15051 627 IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQN 706 (1065)
Q Consensus 627 ~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 706 (1065)
|||++.||++|||+|||++||++||++|
T Consensus 294 ~GYd~~Dy~~idp~~Gt~~df~~Lv~~a---------------------------------------------------- 321 (696)
T 4aee_A 294 HRYDTIDYKSIDKYLGTMEDFEKLVQVL---------------------------------------------------- 321 (696)
T ss_dssp SCCSEEEEEEECGGGCCHHHHHHHHHHH----------------------------------------------------
T ss_pred CCcCcccccccCcccCCHHHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCCCCCC------CCCCCCCc----
Q psy15051 707 WRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGKP------GTPPNNWK---- 774 (1065)
Q Consensus 707 ~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~dG~p------~~~~~~W~---- 774 (1065)
|++||+||||+|+||++.+|+||+++... .++|.+||++.+.....+ ..++++|.
T Consensus 322 -------------H~~GikVilD~V~NHts~~~~~f~~~~~~~~~s~y~dwy~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (696)
T 4aee_A 322 -------------HSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSREL 388 (696)
T ss_dssp -------------HHTTCEEEEEECSSEECTTSHHHHHHHHHCTTSTTGGGBCBCSCCCHHHHHHHHHHHSSSSCCGGGG
T ss_pred -------------HHCCCEEEEeccccccCccCHHHHHHHhcCCCCCCCCceEecCCCCcccccccccccCCCccccccc
Confidence 99999999999999999999999987642 678999999875321000 00011111
Q ss_pred -----------------------cccCCCHHHHHHHHHHH-------------------------------HhcCCceEE
Q psy15051 775 -----------------------HINITSREVMRSQKDVV-------------------------------QSFPLILMI 800 (1065)
Q Consensus 775 -----------------------~ln~~n~~v~~~l~~~l-------------------------------k~~~~~~~l 800 (1065)
.||+.||+|+++|.+++ ++..|++++
T Consensus 389 ~~~~~~~~~~~~y~~~~~~~~~pdLN~~np~Vr~~i~~~~~~Wl~~GvDGfRlDaa~~i~~~f~~~~~~~v~~~~p~~~~ 468 (696)
T 4aee_A 389 YKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDKGIDGFRIDVAMGIHYSWMKQYYEYIKNTYPDFLV 468 (696)
T ss_dssp GGSHHHHHSCCSBCBGGGCTTCEEBCTTCHHHHHHHHHHHHHHHTTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEE
T ss_pred cccccccCCCCceeeecCCCCchhhcCCCHHHHHHHHHHHHHHHhCCCCEEEEechhhCCHHHHHHHHHHHHhhCCCcEE
Confidence 19999999999999982 224568999
Q ss_pred EeecCCCChHHHhhhccCCCCccccccccHHHHHHh-----hcCCChHHHHHHHHHHhhcCCCCC--cccccccCCChhh
Q psy15051 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-----GATSNAKDLENVVNAYLKSLPSGK--WSSWMVGGHSITR 873 (1065)
Q Consensus 801 igE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~--~~~~flenHD~~R 873 (1065)
+||. .. ..++.. .+++.++++.+...+ .+..+...+...+......++... ...+|++|||+.|
T Consensus 469 igE~-~~-----~~~l~~---~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nfl~nHD~~R 539 (696)
T 4aee_A 469 LGEL-AE-----NPRIYM---DYFDSAMNYYLRKAILELLIYKRIDLNEFISRINNVYAYIPHYKALSLYNMLGSHDVPR 539 (696)
T ss_dssp EECC-CS-----CGGGTT---TTCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHHHCEECSCCTTSCC
T ss_pred Eecc-cc-----hhhhcC---CccceEECcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhhhheeEecCCCCCCe
Confidence 9999 32 233332 356777777766543 234577788888887766555432 2345899999999
Q ss_pred HhhhcCHH-HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCC
Q psy15051 874 IATRYSPD-LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGF 952 (1065)
Q Consensus 874 l~s~~~~~-~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gF 952 (1065)
+.++++.+ ++++|++++|++||+|+||||||+|+.+.. ||. +|.+|+|+...
T Consensus 540 ~~s~~~~~~~~kla~a~llt~pG~P~IYyGdE~G~~~~~-------dp~----------------~R~~~~W~~~~---- 592 (696)
T 4aee_A 540 IKSMVQNNKLLKLMYVLIFALPGSPVIYYGDEIGLEGGR-------DPD----------------NRRPMIWDRGN---- 592 (696)
T ss_dssp HHHHHCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCS-------TTT----------------TCCCCCCCGGG----
T ss_pred ehhhcCCcHHHHHHHHHHHhCCCceEEEecccccccCCC-------Ccc----------------ccCCcCCCCCC----
Confidence 99998754 789999999999999999999999999752 332 78999998642
Q ss_pred CCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCC
Q psy15051 953 SKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSR 1032 (1065)
Q Consensus 953 s~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~ 1032 (1065)
...+++++||+|++||+++|+|+.|+++.+..+++++||.|..+++.++||+|++++
T Consensus 593 -----------------------~~~~l~~~~k~Li~lRk~~~al~~g~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~~ 649 (696)
T 4aee_A 593 -----------------------WDLELYEHIKKLIRIYKSCRSMRHGYFLVENLGSNLLFIKRWINNEEIIFLLNVSSK 649 (696)
T ss_dssp -----------------------SCHHHHHHHHHHHHHHHHCHHHHSCEEEEEECSTTEEEEEEEETTEEEEEEEECSSS
T ss_pred -----------------------CchHHHHHHHHHHHHHhhCHHhcCCcEEEEecCCCEEEEEEEcCCCEEEEEEECCCC
Confidence 135799999999999999999999999998888899999999999999999999999
Q ss_pred cEEEEcCC
Q psy15051 1033 TETVDLSD 1040 (1065)
Q Consensus 1033 ~~~v~l~~ 1040 (1065)
+++++++.
T Consensus 650 ~~~v~l~~ 657 (696)
T 4aee_A 650 DISVDLKK 657 (696)
T ss_dssp CEECCCC-
T ss_pred CEEEEccC
Confidence 99988875
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=517.76 Aligned_cols=379 Identities=23% Similarity=0.391 Sum_probs=292.6
Q ss_pred cCChhhcccceEEEEecccccCcCCC--C--CCCCCC-cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNND--G--IGDLRG-KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG 625 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d--~--~Gdl~g-~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~ 625 (1065)
..+++||+++|||||+||||++++++ . .+.... ......|++||+ +||+++|||||+||||+||||||++++++
T Consensus 126 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~-~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~ 204 (588)
T 1j0h_A 126 FEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDL-QGIIDHLDYLVDLGITGIYLTPIFRSPSN 204 (588)
T ss_dssp CCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred CCCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCH-HHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 34688999999999999999987632 1 111110 122344566666 69999999999999999999999999875
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
|||++.||++|||+|||++|||+||++|
T Consensus 205 -~GYd~~dy~~idp~~Gt~~df~~lv~~~--------------------------------------------------- 232 (588)
T 1j0h_A 205 -HKYDTADYFEVDPHFGDKETLKTLIDRC--------------------------------------------------- 232 (588)
T ss_dssp -SCCSCSEEEEECTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred -CCcCccccCccCccCCCHHHHHHHHHHH---------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCCCCCCCC------ccc
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPGTPPNNW------KHI 776 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~~~~~~W------~~l 776 (1065)
|++||+||||+|+||++.+|+||.++... .++|.+||++.... ...|......| ..|
T Consensus 233 --------------H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~dwy~~~~~~~~~~~~~~y~~~~~~~~~pdL 298 (588)
T 1j0h_A 233 --------------HEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKL 298 (588)
T ss_dssp --------------HHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBB
T ss_pred --------------HHCCCEEEEEECcCcCcccchhHHHHHhcCCCCCcccccccccCCCCCCCCCCeEEecCCCCcccc
Confidence 99999999999999999999999987642 67899999876431 11100000011 118
Q ss_pred cCCCHHHHHHHHHH--------------------------------HHhcCCceEEEeecCCCChHHHhhhccCCCCccc
Q psy15051 777 NITSREVMRSQKDV--------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT 824 (1065)
Q Consensus 777 n~~n~~v~~~l~~~--------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~ 824 (1065)
|+.||+|+++|.++ +++..|+++++||.|.... .+++ ..++
T Consensus 299 n~~np~Vr~~l~~~~~~Wl~~~giDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~~----~~~~---g~~~ 371 (588)
T 1j0h_A 299 NTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM----PWLR---GDQF 371 (588)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG----GGCS---SSSC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCCCeEEEEEecCchh----hhhc---CCCc
Confidence 99999999999997 2224568999999997632 3333 2457
Q ss_pred cccccHHHHHHhh-----cCCChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCC
Q psy15051 825 HLSVNYEIMNKFG-----ATSNAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPG 895 (1065)
Q Consensus 825 d~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpG 895 (1065)
++.+++.++..+. .......+...+......++.. ....+|++|||+.|+.+++++ ++++++++++|++||
T Consensus 372 d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~pG 451 (588)
T 1j0h_A 372 DAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTG 451 (588)
T ss_dssp SEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSS
T ss_pred CEEEChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccchhhhheeecCCCCCchhhhhcCCcHHHHHHHHHHHHhCCC
Confidence 8888887776542 3456677777776665545432 122459999999999999864 578999999999999
Q ss_pred eEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhc
Q psy15051 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKK 975 (1065)
Q Consensus 896 iP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~ 975 (1065)
+|+||||||+|+.+.. ||. +|.+|+|+...
T Consensus 452 ~P~iy~G~E~g~~~~~-------dp~----------------~r~~~~W~~~~--------------------------- 481 (588)
T 1j0h_A 452 SPCIYYGDEIGMTGGN-------DPE----------------CRKCMVWDPMQ--------------------------- 481 (588)
T ss_dssp CCEEETTGGGTCCCCS-------TTG----------------GGCCCCCCTTT---------------------------
T ss_pred CcEEEeecccCccCCC-------Ccc----------------ccCCcCCCCCC---------------------------
Confidence 9999999999999752 333 67899998532
Q ss_pred CCCcHHHHHHHHHHHHHhcccccCCCeEEEcc--CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEc
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVRMGDYKISTP--NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~--~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
...+++++||+|++|||++|+|+.|.++++.. ++++++|.|..+++.++||+|++.++++++++.... .+.++.+++
T Consensus 482 ~~~~l~~~~~~Li~lRk~~~al~~g~~~~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~l~~~~~-~~~~~~ll~ 560 (588)
T 1j0h_A 482 QNKELHQHVKQLIALRKQYRSLRRGEISFLHADDEMNYLIYKKTDGDETVLVIINRSDQKADIPIPLDAR-GTWLVNLLT 560 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHCEEEEECCSCTTTEEEEEEECSSCEEEEEEECSSSCEEEECCCCCS-SEEEEETTT
T ss_pred CcHHHHHHHHHHHHHHhhCHHHcCCcEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCEEEecCcccc-CceeEEecc
Confidence 23579999999999999999999999999886 568999999988889999999999999999875311 233444444
Q ss_pred c
Q psy15051 1054 S 1054 (1065)
Q Consensus 1054 s 1054 (1065)
+
T Consensus 561 ~ 561 (588)
T 1j0h_A 561 G 561 (588)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-53 Score=515.70 Aligned_cols=365 Identities=23% Similarity=0.387 Sum_probs=286.4
Q ss_pred cCChhhcccceEEEEecccccCcCCC--C--CCCCCC--cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNND--G--IGDLRG--KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN 624 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d--~--~Gdl~g--~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~ 624 (1065)
...++||+++||||||||+|.+++.+ . .+.... ......|++||+ +||+++|||||+||||+||||||+++++
T Consensus 122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~-~gi~~~LdyLk~LGvt~I~L~Pi~~~~~ 200 (585)
T 1wzl_A 122 FTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDL-KGVIDRLPYLEELGVTALYFTPIFASPS 200 (585)
T ss_dssp CCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred cCCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCH-HHHHHHhHHHHHcCCCEEEECCcccCCC
Confidence 35688999999999999999876621 1 111111 122344666666 6999999999999999999999999987
Q ss_pred CCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCC
Q psy15051 625 GDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1065)
+ |||+++||++|||+|||++|||+||++|
T Consensus 201 ~-~GYd~~dy~~id~~~Gt~~dfk~lv~~~-------------------------------------------------- 229 (585)
T 1wzl_A 201 H-HKYDTADYLAIDPQFGDLPTFRRLVDEA-------------------------------------------------- 229 (585)
T ss_dssp S-SCCSCSEEEEECTTTCCHHHHHHHHHHH--------------------------------------------------
T ss_pred C-CCcCcccccccCcccCCHHHHHHHHHHH--------------------------------------------------
Confidence 5 9999999999999999999999999999
Q ss_pred CCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCCCCCCCCc-------
Q psy15051 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPGTPPNNWK------- 774 (1065)
Q Consensus 705 ~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~~~~~~W~------- 774 (1065)
|++||+||||+|+||++.+|+||+++..+ .++|.+||++.... ...+......|.
T Consensus 230 ---------------H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~y~~~~~~~~~~p 294 (585)
T 1wzl_A 230 ---------------HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMP 294 (585)
T ss_dssp ---------------HTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCB
T ss_pred ---------------HHCCCEEEEEEcCCcCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCeeEcccCCCCCC
Confidence 99999999999999999999999987653 67899999887521 111111122343
Q ss_pred cccCCCHHHHHHHHHH-------------------------------HHhcCCceEEEeecCCCChHHHhhhccCCCCcc
Q psy15051 775 HINITSREVMRSQKDV-------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQG 823 (1065)
Q Consensus 775 ~ln~~n~~v~~~l~~~-------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~ 823 (1065)
.||+.||+|+++|.++ +++..|+++++||.|.... .+.+ ..+
T Consensus 295 dln~~~~~vr~~l~~~~~~Wl~~gvDGfR~D~a~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~~----~~~~---~~~ 367 (585)
T 1wzl_A 295 KLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS----GWLM---GDQ 367 (585)
T ss_dssp BBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG----GGCS---SSS
T ss_pred eeCcCCHHHHHHHHHHHHHHHhCCCeEEEEeccccCCHHHHHHHHHHHHHHCCCEEEEEEecCchH----HHhc---CCC
Confidence 2999999999999998 2234568999999997632 3333 135
Q ss_pred ccccccHHHHHHh----hc-CCChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcCH--HHHHHHHHHHHhCC
Q psy15051 824 THLSVNYEIMNKF----GA-TSNAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLP 894 (1065)
Q Consensus 824 ~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlp 894 (1065)
++..+++.++..+ .. ......+...+......++.. ....+|++|||+.|+.+++++ ++++++++++|++|
T Consensus 368 ~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~~~~p 447 (585)
T 1wzl_A 368 FDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYL 447 (585)
T ss_dssp CSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSS
T ss_pred cCEEECHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcchhhhccceEecCCCCchhhHHhcCCcHHHHHHHHHHHHhCC
Confidence 7777777776544 22 345677777776654444421 112349999999999999874 57899999999999
Q ss_pred CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhh
Q psy15051 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974 (1065)
Q Consensus 895 GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~ 974 (1065)
|+|+||||+|+|+.+.. ||. +|.+|+|+...
T Consensus 448 G~P~iy~G~E~g~~~~~-------d~~----------------~r~~~~W~~~~-------------------------- 478 (585)
T 1wzl_A 448 GTPLIYYGDEIGMAGAT-------DPD----------------CLRPMIWEEKE-------------------------- 478 (585)
T ss_dssp SEEEEETTGGGTCCCCS-------TTG----------------GGCCCCCCGGG--------------------------
T ss_pred CCcEEEeecccCcCCCC-------Ccc----------------cccCCCCCCCC--------------------------
Confidence 99999999999999752 332 67899998532
Q ss_pred cCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC--CcEEEEEEEcCCcEEEEEEECCCCcEEEEcC
Q psy15051 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN--NYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 975 ~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~--~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~ 1039 (1065)
..++++++||+|++||+++|+|+.|.++++..+ ++++||.|..+++.++||+|++.++++++++
T Consensus 479 -~~~~l~~~~~~Li~lRk~~~al~~g~~~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~~~~~~~l~ 544 (585)
T 1wzl_A 479 -QNRGLFEFYKELIRLRHRLASLTRGNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGEKQTVLLQ 544 (585)
T ss_dssp -SCHHHHHHHHHHHHHHHHCHHHHHCEEEEEEEETTTTEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred -CcHHHHHHHHHHHHHHhhCHHHcCCcEEEEEeCCCCCEEEEEEEcCCCEEEEEEECCCCCEEEEec
Confidence 235799999999999999999999999988764 7899999998889999999999999999883
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-53 Score=504.18 Aligned_cols=373 Identities=19% Similarity=0.304 Sum_probs=282.5
Q ss_pred hhcccceEEEEecccc-cCcCCC--CCC----CCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCC
Q psy15051 555 EWWKNTVIYQILVPSF-KDSNND--GIG----DLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDI 627 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F-~d~~~d--~~G----dl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~ 627 (1065)
+||+++|||||+|||| ++++.+ ..| ...+.+....|++||+ +||+++|||||+||||+||||||++++++ |
T Consensus 2 ~W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~-~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~-~ 79 (475)
T 2z1k_A 2 AWYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTL-WGVAEKLPYLLDLGVEAIYLNPVFASTAN-H 79 (475)
T ss_dssp CTTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEEESST-T
T ss_pred CcccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCH-HHHHHHhHHHHHcCCCEEEECCCcCCCCC-C
Confidence 6999999999999999 777632 112 1111222334556666 69999999999999999999999999874 9
Q ss_pred CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 628 GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 628 GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
||++.||++|||+|||++|||+||++|
T Consensus 80 gY~~~dy~~idp~~Gt~~df~~lv~~~----------------------------------------------------- 106 (475)
T 2z1k_A 80 RYHTVDYFQVDPILGGNEALRHLLEVA----------------------------------------------------- 106 (475)
T ss_dssp CCSEEEEEEECGGGTCHHHHHHHHHHH-----------------------------------------------------
T ss_pred CcCCCCcCccCcccCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCC-CCCCCCc------ccc
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPG-TPPNNWK------HIN 777 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~-~~~~~W~------~ln 777 (1065)
|++||+||+|+|+||++.+|+||+++..+ .++|.+||++.+.. ...+. .....|. .||
T Consensus 107 ------------h~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pdln 174 (475)
T 2z1k_A 107 ------------HAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNPELPKLK 174 (475)
T ss_dssp ------------HHTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBCSSSCCTTSSSCSBCBGGGCTTSBBBC
T ss_pred ------------HHCCCEEEEEEecccccCCCHHHHHHHhcCCCCCCcceeecCCCCCcCCCCCCCccccCCCCCcCccc
Confidence 99999999999999999999999987653 56899999886521 11100 0111121 299
Q ss_pred CCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCCChHHHhhhccCCCCcccc
Q psy15051 778 ITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTH 825 (1065)
Q Consensus 778 ~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d 825 (1065)
+.||+|+++|.++++ +..|+++++||.|.... .+++. .+++
T Consensus 175 ~~np~v~~~i~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~p~~~~igE~~~~~~----~~~~~---~~~d 247 (475)
T 2z1k_A 175 VETPAVREYLLAVAEHWIRFGVDGWRLDVPNEIPDPTFWREFRQRVKGANPEAYIVGEIWEEAD----FWLQG---DMFD 247 (475)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCEEEESSGGGCCCHHHHHHHHHHHHHHCTTCEEEECCSSCCS----GGGSS---SSCS
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEeecccccCCHHHHHHHHHHHHhhcCCCcEEEEEecCCcc----ccccC---CCcC
Confidence 999999999999822 23458999999997632 23331 3577
Q ss_pred ccccHHHHHHh----hc-CC----------------ChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcCH--
Q psy15051 826 LSVNYEIMNKF----GA-TS----------------NAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYSP-- 880 (1065)
Q Consensus 826 ~~~~~~~~~~~----~~-~~----------------~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~~-- 880 (1065)
..+++.+...+ .. .. ....+...+......++.. ....+|++|||+.|+.++++.
T Consensus 248 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~ 327 (475)
T 2z1k_A 248 AVMNYPLARAVLGFVGGEALDRDLAAQTGLGRIEPLQALAFSHRLEDLFGRYRPEVVRAQMNLLTSHDTPRLLSLMRGSV 327 (475)
T ss_dssp EEBCHHHHHHHHHHHHGGGSCHHHHTTSTTCSCCCCCHHHHHHHHHHHTTSSCHHHHTTCEECSCCTTSCCHHHHTTTCH
T ss_pred eeeChhHHHHHHHHHhCCccccccccccccccccCCCHHHHHHHHHHHHHhccchhhhhheeeccCCchhhHHHhcCCcH
Confidence 77777666543 22 21 4566766666655544321 122359999999999999873
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC
Q psy15051 881 DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP 960 (1065)
Q Consensus 881 ~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~ 960 (1065)
++++++++++|++||+|+||||||+|+.+.. ||. +|.+|+|+...
T Consensus 328 ~~~~~a~a~ll~~pG~P~iy~G~E~g~~~~~-------d~~----------------~r~~~~W~~~~------------ 372 (475)
T 2z1k_A 328 ERARLALALLFLLPGNPTVYYGEEVGMAGGK-------DPE----------------NRGGMVWEEAR------------ 372 (475)
T ss_dssp HHHHHHHHHHTTSSSEEEEETTGGGTCCCCS-------TTT----------------TCCCCCCCGGG------------
T ss_pred HHHHHHHHHHHhCCCCCEEEeecccCcCCCC-------Chh----------------hccCCCCCccc------------
Confidence 6789999999999999999999999998752 332 78899998532
Q ss_pred CCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
...+++++||+|++|||++|+|+.|+++.+..++++++|.| +.++||+|++.++++++++.
T Consensus 373 ---------------~~~~l~~~~~~Li~lRk~~~~l~~g~~~~~~~~~~v~a~~R----~~~lv~~N~~~~~~~~~l~~ 433 (475)
T 2z1k_A 373 ---------------WQKDLRETVKRLARLRKEHPALRTAPYLRIYAQDGHLAFAR----GPYLAVVNASPHPFRQDFPL 433 (475)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHHCTHHHHSCCEEEEEETTEEEEEE----TTEEEEEECSSSCEECCSBC
T ss_pred ---------------ccHHHHHHHHHHHHHHhcCHhhcCCceEEEecCCCEEEEEE----CeEEEEEECCCCCEEEEecc
Confidence 23579999999999999999999999998887789999999 57999999999999888864
Q ss_pred Ccc--CCCcEEEEEccC
Q psy15051 1041 CIE--NGGDVAIFTSSV 1055 (1065)
Q Consensus 1041 ~~~--~~~~~~v~~~s~ 1055 (1065)
... ..+.++.++++.
T Consensus 434 ~~~~~~~~~~~~~l~~~ 450 (475)
T 2z1k_A 434 HGVFPRGGRAVDLLSGE 450 (475)
T ss_dssp TTSCTTCCCEEETTTCC
T ss_pred ccccccCceeeeeecCc
Confidence 211 014455555543
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=514.24 Aligned_cols=378 Identities=19% Similarity=0.346 Sum_probs=290.8
Q ss_pred cCChhhcccceEEEEecccccCcCCCC----CCCCCC-cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDG----IGDLRG-KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG 625 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~----~Gdl~g-~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~ 625 (1065)
...++||+++||||||||+|.+++.+. .+.... .+....|++||+ +||+++|||||+||||+||||||++++++
T Consensus 122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~-~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~ 200 (583)
T 1ea9_C 122 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDL-QGVIDHLDHLSKLGVNAVYFTPLFKATTN 200 (583)
T ss_dssp CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCH-HHHHHTHHHHHHHTCSEEEECCCSSCSSS
T ss_pred CCCCcccccceEEEEchHHhcCCCCccCccccccccCCCCcccccCCcCH-HHHHHhhHHHHHcCCCEEEECCCccCCCC
Confidence 356889999999999999998766321 111111 122334666666 69999999999999999999999999875
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
|||++.||++|||+|||++|||+||++|
T Consensus 201 -~GYd~~dy~~idp~~Gt~~df~~lv~~~--------------------------------------------------- 228 (583)
T 1ea9_C 201 -HKYDTEDYFQIDPQFGDKDTLKKLVDLC--------------------------------------------------- 228 (583)
T ss_dssp -STTSCSCTTCCCTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred -CCcCcccccccCcccCCHHHHHHHHHHH---------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCC-CCCCCCc------c
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPG-TPPNNWK------H 775 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~-~~~~~W~------~ 775 (1065)
|++||+||||+|+||++.+|+||++...+ .++|.+||++.... ...|+ .....|. .
T Consensus 229 --------------H~~Gi~VilD~V~NH~~~~~~~f~~~~~~g~~s~y~~~y~~~~~~~~~~~~~~~y~~~~~~~~~pd 294 (583)
T 1ea9_C 229 --------------HERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPK 294 (583)
T ss_dssp --------------TTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBB
T ss_pred --------------HHCCCEEEEEEccccCCCccHHHHHHHhcCCCCCccCceEecCCCCCCCCCCCCceecCCCCCcce
Confidence 99999999999999999999999998753 67899999877521 11111 0112232 2
Q ss_pred ccCCCHHHHHHHHHH--------------------------------HHhcCCceEEEeecCCCChHHHhhhccCCCCcc
Q psy15051 776 INITSREVMRSQKDV--------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQG 823 (1065)
Q Consensus 776 ln~~n~~v~~~l~~~--------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~ 823 (1065)
||+.||+|+++|.++ +++..|+++++||.|.... .+.+ ..+
T Consensus 295 ln~~~p~Vr~~l~~~~~~W~~~~gvDGfR~D~~~~~~~~f~~~~~~~v~~~~p~~~~igE~~~~~~----~~~~---~~~ 367 (583)
T 1ea9_C 295 LNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESS----IWLE---GDQ 367 (583)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCT----TTTT---TTS
T ss_pred eccCCHHHHHHHHHHHHHHHHhcCceEEEecccccCCHHHHHHHHHHHHhhCCCeEEEEEEcCChH----HHhc---CCC
Confidence 999999999999998 2234568999999997532 2332 245
Q ss_pred ccccccHHHHHHhh-----cCCChHHHHHHHHHHhhcCCCCC--cccccccCCChhhHhhhcCH--HHHHHHHHHHHhCC
Q psy15051 824 THLSVNYEIMNKFG-----ATSNAKDLENVVNAYLKSLPSGK--WSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLP 894 (1065)
Q Consensus 824 ~d~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~--~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlp 894 (1065)
++..+++.++..+. .......+...+......++... ...+|++|||+.|+.+++++ ++++++++++|++|
T Consensus 368 ~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~la~~~~~~~p 447 (583)
T 1ea9_C 368 FDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYF 447 (583)
T ss_dssp CSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHHHHTTSS
T ss_pred cCEEECHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcchhhhhhheeecCCCCchhhhhhcCCcHHHHHHHHHHHHcCC
Confidence 77788887776542 23456677776766544443211 12349999999999999864 57899999999999
Q ss_pred CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhh
Q psy15051 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974 (1065)
Q Consensus 895 GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~ 974 (1065)
|+|+||||+|+|+.+.. ||. +|.+|+|+...
T Consensus 448 G~P~iy~G~E~g~~~~~-------d~~----------------~r~~~~W~~~~-------------------------- 478 (583)
T 1ea9_C 448 GTPCIYYGDEVGLDGGH-------DPG----------------CRKCMEWDETK-------------------------- 478 (583)
T ss_dssp SEECCCSSCSSCCCCCS-------HHH----------------HTCCCCCCTTS--------------------------
T ss_pred CCcEEEeccccCccCCC-------Chh----------------hcCCcCCCCCC--------------------------
Confidence 99999999999998752 332 67899998532
Q ss_pred cCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC--CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEE
Q psy15051 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN--NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFT 1052 (1065)
Q Consensus 975 ~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~--~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~ 1052 (1065)
..++++++||+|++||+++|+|+.|.++++..+ +++++|.|..+++.++||+|++.+++++.++.. .+.++.++
T Consensus 479 -~~~~~~~~~~~Li~lRk~~~al~~g~~~~~~~~~~~~v~af~R~~~~~~~lvv~N~~~~~~~v~lp~~---~~~~~~~l 554 (583)
T 1ea9_C 479 -HDKDLFAFYQTVIRLRQAHAALRTGTFKFLTAEKNSRQIAYLREDDQDTILVVMNNDKAGHTLTLPVR---HAQWTHLW 554 (583)
T ss_dssp -CCHHHHHHHHHHHHHHHHCSHHHHCCCCCSBCCSSCCEEEEEEECSSCEEEEEEECSSSCEEEEEECC---SSSCCEEB
T ss_pred -CcHHHHHHHHHHHHHhhhChHhccCceEEEeeCCCCCEEEEEEEcCCCEEEEEEECCCCCEEEEecCC---CceEEEec
Confidence 235799999999999999999999999888765 789999999888999999999999999888642 23444555
Q ss_pred ccC
Q psy15051 1053 SSV 1055 (1065)
Q Consensus 1053 ~s~ 1055 (1065)
++.
T Consensus 555 ~~~ 557 (583)
T 1ea9_C 555 QDD 557 (583)
T ss_dssp STT
T ss_pred cCC
Confidence 544
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=511.99 Aligned_cols=382 Identities=18% Similarity=0.302 Sum_probs=285.9
Q ss_pred ChhhcccceEEEEecccccCcCCCC--CCCCCC---cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDG--IGDLRG---KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--- 624 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~--~Gdl~g---~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--- 624 (1065)
...|+++.|||||+||||+++++++ .....+ ....+.|+|||+ +||+++|||||+||||+|||+||++++.
T Consensus 100 ~~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl-~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~ 178 (601)
T 3edf_A 100 RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDI-RGTIDHLDYIAGLGFTQLWPTPLVENDAAAY 178 (601)
T ss_dssp CCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCH-HHHHHTHHHHHHTTCCEEEESCCEECCCSSS
T ss_pred cCCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCH-HHHHHHHHHHHHcCCCEEEECccccCCCCCC
Confidence 3679999999999999999987542 211111 123467888888 8999999999999999999999999874
Q ss_pred CCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCC
Q psy15051 625 GDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1065)
.+|||++.||++|||+|||++||++||++|
T Consensus 179 ~~~GY~~~dy~~idp~~Gt~~df~~Lv~~a-------------------------------------------------- 208 (601)
T 3edf_A 179 SYHGYAATDHYRIDPRYGSNEDFVRLSTEA-------------------------------------------------- 208 (601)
T ss_dssp GGGCCSCSEEEEECTTTCCHHHHHHHHHHH--------------------------------------------------
T ss_pred CCCCcCccccccccccCCCHHHHHHHHHHH--------------------------------------------------
Confidence 349999999999999999999999999999
Q ss_pred CCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCC-----CCCCC---------
Q psy15051 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGK-----PGTPP--------- 770 (1065)
Q Consensus 705 ~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~-----p~~~~--------- 770 (1065)
|++||+||+|+|+||++.+|+||++ .++.+||.+..+.... +...+
T Consensus 209 ---------------H~~Gi~VilD~V~NH~~~~~~~~~~-----~p~~dw~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 268 (601)
T 3edf_A 209 ---------------RKRGMGLIQDVVLSHIGKHHWWMKD-----LPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSEN 268 (601)
T ss_dssp ---------------HHTTCEEEEEECCSBCCTTSGGGGS-----CSSTTSBGGGGSCCBCCCCGGGGGCTTCCHHHHHH
T ss_pred ---------------HHcCCEEEEEECCcccCCcchhhhh-----CCccCceeeCCCCCCCccccccccCCCCccccccc
Confidence 8999999999999999999999975 4688998875321100 00000
Q ss_pred --CCCcc-----ccCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHH
Q psy15051 771 --NNWKH-----INITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEK 811 (1065)
Q Consensus 771 --~~W~~-----ln~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~ 811 (1065)
.+|.. ||+.||+|+++|.+++ ++..|+++++||.|...+..
T Consensus 269 ~~~~wf~~~lpdLN~~np~V~~~l~~~~~~Wi~~~GVDGfRlD~~~~~~~~f~~~~~~~v~~~~p~~~~vgE~~~~~~~~ 348 (601)
T 3edf_A 269 FTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGQEWSTRVPV 348 (601)
T ss_dssp HHHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCCSCHHH
T ss_pred cccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCEEEeeccccCCHHHHHHHHHHHHHhCCCeEEEeeecCCchHH
Confidence 11221 9999999999999972 22345899999999986665
Q ss_pred HhhhccCC-----CCccccccccHHHHHHh----hcC---CChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC
Q psy15051 812 VAKYYGTG-----DTQGTHLSVNYEIMNKF----GAT---SNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS 879 (1065)
Q Consensus 812 ~~~y~~~~-----~~~~~d~~~~~~~~~~~----~~~---~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~ 879 (1065)
...+.... ...+++.++++.+...+ ... .....+...+.. ...++.....++|++|||++|+.++++
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~v~nf~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~fl~NHD~~R~~s~~~ 427 (601)
T 3edf_A 349 VARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSL-DYLYPEPQNLVLFGGNHDMARMFSAAG 427 (601)
T ss_dssp HHTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTSSSTTHHHHHHHGG-GGGSSCGGGSEEESCCTTSCCHHHHTT
T ss_pred HhhhhccccccccccccCCeEEChHHHHHHHHHHhccchhhHHHHHHHHHhh-hcccCCccceEEeeccCCCCCchhhcC
Confidence 54443321 12456667777766544 222 122233222221 112334445567999999999999876
Q ss_pred --HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcC--CCCcccccCCCCC
Q psy15051 880 --PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF--QWNDQENAGFSKA 955 (1065)
Q Consensus 880 --~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m--~W~~~~~~gFs~~ 955 (1065)
.++++++++++|++||+|+||||+|+|+.+... ...||. +|.+| .|+....+||+..
T Consensus 428 ~~~~~~k~a~alllt~pG~P~IYyG~E~G~~~~~~---~~~d~~----------------~R~~~p~~W~~~~~~~F~~~ 488 (601)
T 3edf_A 428 EDFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTVK---GRDDAS----------------YRRDFPGGWAGDKANAFSGA 488 (601)
T ss_dssp TCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCCS---SCCGGG----------------GCCCCTTSSTTCSSBTTTTB
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEeehcccccCCCC---CCCChh----------------hhhcCccCcCcccccCcCcc
Confidence 357899999999999999999999999988310 112222 56655 5988777777643
Q ss_pred CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEE
Q psy15051 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTET 1035 (1065)
Q Consensus 956 ~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~ 1035 (1065)
.+...+.+++++||+|++||+++|+|+.|++..+..++++++|.|..+++.++||+|++.++++
T Consensus 489 ----------------~~~~~~~~l~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~vlVv~N~s~~~~~ 552 (601)
T 3edf_A 489 ----------------GLTSQQRAAQDLVRKLANWRKNQPVIHNGRLMHFGPEENTWVYFRYNKDKRIMVAMNNNDKPMT 552 (601)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHHHTCHHHHHSEEEECCCBTTEEEEEEECSSEEEEEEEECSSSCEE
T ss_pred ----------------ccccchHHHHHHHHHHHHHHhhCccccCCceEEEEecCCEEEEEEEcCCCEEEEEEECCCCCEE
Confidence 1112235799999999999999999999999988888899999999999999999999999999
Q ss_pred EEcCCC
Q psy15051 1036 VDLSDC 1041 (1065)
Q Consensus 1036 v~l~~~ 1041 (1065)
++++..
T Consensus 553 ~~l~~~ 558 (601)
T 3edf_A 553 LPTARF 558 (601)
T ss_dssp EEGGGG
T ss_pred EECccc
Confidence 998753
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=478.68 Aligned_cols=354 Identities=16% Similarity=0.295 Sum_probs=280.5
Q ss_pred CChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC------
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG------ 625 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~------ 625 (1065)
.+|.||+++|||||++++|++ .|+|+ ||+++|||||+||||+|||+||+++++.
T Consensus 5 ~~~~w~~~~viYei~~~~f~~-----~G~~~---------------~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~ 64 (449)
T 3dhu_A 5 DTQTQLRNEMIYSVFVRNYSE-----AGNFA---------------GVTADLQRIKDLGTDILWLLPINPIGEVNRKGTL 64 (449)
T ss_dssp --CGGGGGCCEEEECHHHHSS-----SCSHH---------------HHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTT
T ss_pred CCchhhhcCEEEEEEhhhhCC-----CCCHH---------------HHHHhHHHHHHcCCCEEEECCcccccccCCCCCC
Confidence 468999999999999999987 48999 9999999999999999999999998654
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++|||+||++|
T Consensus 65 ~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~--------------------------------------------------- 93 (449)
T 3dhu_A 65 GSPYAIKDYRGINPEYGTLADFKALTDRA--------------------------------------------------- 93 (449)
T ss_dssp CCTTSBSCTTSCCGGGCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCcCcccccccCcccCCHHHHHHHHHHH---------------------------------------------------
Confidence 27899999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc---ccCCCHH
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---INITSRE 782 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~---ln~~n~~ 782 (1065)
|++||+||+|+|+||++.+++|+.+ +++||+... +|.+.....+|.. ||+.||+
T Consensus 94 --------------h~~Gi~vi~D~V~NH~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~w~~~~dLn~~np~ 150 (449)
T 3dhu_A 94 --------------HELGMKVMLDIVYNHTSPDSVLATE-------HPEWFYHDA--DGQLTNKVGDWSDVKDLDYGHHE 150 (449)
T ss_dssp --------------HHTTCEEEEEECCSEECTTSHHHHH-------CGGGBCBCT--TSCBCCSSTTCTTCEEBCTTSHH
T ss_pred --------------HHCCCEEEEEEccCcCcCccchhhc-------CccceEECC--CCCcCCCCCCCCCCCccCCCCHH
Confidence 9999999999999999999999876 568887543 2332223456765 9999999
Q ss_pred HHHHHHHHHH------------------------------hcCCceEEEeecCCCChHHHhhhccCCC------Cccccc
Q psy15051 783 VMRSQKDVVQ------------------------------SFPLILMIITEAYSPSLEKVAKYYGTGD------TQGTHL 826 (1065)
Q Consensus 783 v~~~l~~~lk------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~~------~~~~d~ 826 (1065)
||++|.++++ +..|+++++||.|...........+... ..++|+
T Consensus 151 Vr~~l~~~l~~w~~~vDGfRlDaa~~~~~~f~~~~~~~~~~~~p~~~~~gE~~~~~~~~~~~~~g~~~~~~~~l~~~fd~ 230 (449)
T 3dhu_A 151 LWQYQIDTLLYWSQFVDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELRSQGYTGLSDSELYQAFDM 230 (449)
T ss_dssp HHHHHHHHHHHHTTTCSEEEETTGGGSCHHHHHHHHHHHHHHSTTCEEEECCCCHHHHHHHHHTTCCCCCHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHhCCEEEEEChhhCCHHHHHHHHHHHHhhCCCeEEEeccCCchHHHHHHhcCccccccchhhhccCc
Confidence 9999998833 2345899999999842211111001000 034677
Q ss_pred cccHHHHHHh----hcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC-HHHHHHHHHHHHhCCCeEEEEc
Q psy15051 827 SVNYEIMNKF----GATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVTFA 901 (1065)
Q Consensus 827 ~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~-~~~~kla~~ll~tlpGiP~Iyy 901 (1065)
++++.+...+ .+..+...+...+......++......+|++|||++|+.+.++ .++++++++++|++||+|+|||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~~~~k~a~a~~lt~pG~P~Iyy 310 (449)
T 3dhu_A 231 TYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFPGNYVKMRFLENHDNARMMSLMHSKAEAVNNLTWIFMQRGIPLIYN 310 (449)
T ss_dssp EEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTTSCTTCEEEECSCCTTSCCHHHHCCSHHHHHHHHHHHHHSSSEEEEET
T ss_pred cccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcCCchhheeecccCCccchhhhcCCHHHHHHHHHHHHhCCCCcEEEc
Confidence 7777666544 4556677777777666666676666677999999999999985 4678999999999999999999
Q ss_pred ccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHH
Q psy15051 902 GDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHY 981 (1065)
Q Consensus 902 GdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~ 981 (1065)
|+|+|+.+.. ||. +|.+|+|+.. .+++
T Consensus 311 G~E~g~~~~~-------d~~----------------~r~~~~W~~~------------------------------~~~~ 337 (449)
T 3dhu_A 311 GQEFLAEHQP-------SLF----------------DRDTMVADRH------------------------------GDVT 337 (449)
T ss_dssp TGGGTCCSCC-------CSS----------------SCCCCTTCCC------------------------------CCCH
T ss_pred cEecccCCCC-------Ccc----------------cCCCcCCCcc------------------------------chHH
Confidence 9999998742 322 6788999751 3578
Q ss_pred HHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 982 SVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 982 ~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
++||+|++||++ ++|+.|++.++..++++++|.|..+++.++||+|+++.++++.++- ..|.++.++++..
T Consensus 338 ~~i~~Li~lR~~-~al~~g~~~~~~~~~~~iaf~R~~~~~~~~vv~N~s~~~~~~~~~l---p~g~y~Dvlsg~~ 408 (449)
T 3dhu_A 338 PLIQKLVTIKQL-PLLRAADYQLAVVEEGIVKITYRAAGEALTAWIPLKGQVTAVATKL---AAGSYQNLLTDGP 408 (449)
T ss_dssp HHHHHHHHHHTS-GGGGCSEEEEEECGGGCEEEEEEETTEEEEEEECTTCCEEEEECCS---CSEEEEETTTTEE
T ss_pred HHHHHHHHHhhh-HhccCCceEEEecCCCEEEEEEEeCCcEEEEEEECCCCceEEEeec---CCCeEEEcccCce
Confidence 999999999999 9999999999888788999999998999999999999988888762 1245555554443
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-51 Score=477.39 Aligned_cols=373 Identities=20% Similarity=0.433 Sum_probs=284.6
Q ss_pred CChhhcccceEEEEe-cccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCc
Q psy15051 552 NQKEWWKNTVIYQIL-VPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYD 630 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~-v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~ 630 (1065)
+++.||+++|||||+ +++|. ++++|||+ ||+++|||||+||||+||||||+++++. ||+
T Consensus 8 ~~~~ww~~~viYqi~~~~sf~---gdg~Gdl~---------------gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~--~y~ 67 (424)
T 2dh2_A 8 PAQKWWHTGALYRIGDLQAFQ---GHGAGNLA---------------GLKGRLDYLSSLKVKGLVLGPIHKNQKD--DVA 67 (424)
T ss_dssp CCCCGGGSSCEEEECCHHHHH---CTTCCSHH---------------HHHTTHHHHHHTTCSEEEECCCEEECTT--CST
T ss_pred CcccccccCeEEEEcCccccC---CCCCCCHH---------------HHHHHHHHHHHcCCCEEEECCCCCCCCC--CCC
Confidence 346799999999999 99997 57889999 9999999999999999999999999875 799
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccC
Q psy15051 631 ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAG 710 (1065)
Q Consensus 631 ~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
+.||++|||+|||++||++||++|
T Consensus 68 ~~dy~~idp~~Gt~~d~~~lv~~a-------------------------------------------------------- 91 (424)
T 2dh2_A 68 QTDLLQIDPNFGSKEDFDSLLQSA-------------------------------------------------------- 91 (424)
T ss_dssp TEEEEEECGGGCCHHHHHHHHHHH--------------------------------------------------------
T ss_pred cccccccCccCCCHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999999
Q ss_pred cccchhhhhhhcCcEEEEEeccCCCCCCchhhHhh----hccCCCCCcceeecCCCCCCCCCCCCCCcccc-CCC-HHHH
Q psy15051 711 NQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKS----AQKIDPYTNYYVWKDGLNGKPGTPPNNWKHIN-ITS-REVM 784 (1065)
Q Consensus 711 ~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~----~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ln-~~n-~~v~ 784 (1065)
|++||+||+|+|+||+| +|+||... ++..-..-.||+ ..+.||+ |++. .+ ..+ .++.
T Consensus 92 ---------h~~Gi~vilD~V~NH~s-~~~wF~~q~~~Vr~~~~~~~~~Wl-~~gvDGf-RlD~-----v~~~~~~~~~~ 154 (424)
T 2dh2_A 92 ---------KKKSIRVILDLTPNYRG-ENSWFSTQVDTVATKVKDALEFWL-QAGVDGF-QVRD-----IENLKDASSFL 154 (424)
T ss_dssp ---------HHTTCEEEEECCTTTTS-SSTTCSSCHHHHHHHHHHHHHHHH-HHTCCEE-EECC-----GGGSTTHHHHH
T ss_pred ---------HHCCCEEEEEECCCcCC-CcccccccCHHHHHHHHHHHHHHH-HcCCCEE-EEec-----cccCCccHHHH
Confidence 88888888889999999 78888321 000000113444 2466888 5443 21 222 3578
Q ss_pred HHHHHHHHhcCCc-eEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCccc
Q psy15051 785 RSQKDVVQSFPLI-LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSS 863 (1065)
Q Consensus 785 ~~l~~~lk~~~~~-~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 863 (1065)
+.+.+.++++.++ +++++|.|.. +.....|++.+ ++++|++.+.. ........++..+..+..... ..+..
T Consensus 155 ~~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~~~~~~----~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~ 226 (424)
T 2dh2_A 155 AEWQNITKGFSEDRLLIAGTNSSD-LQQILSLLESN----KDLLLTSSYLS--DSGSTGEHTKSLVTQYLNATG-NRWCS 226 (424)
T ss_dssp HHHHHHHHHHCTTCEEEEECSCCC-HHHHHHHTTTC----TTCEEECSTTT--TCSSCHHHHHHHHHHHHHHHT-TCCCE
T ss_pred HHHHHHHHHhCCCcEEEEEEecCC-HHHHHHHhccc----cccccchhhhc--CCCCCHHHHHHHHHHHHHhhc-cCcee
Confidence 8888888998876 4556776654 66666776643 45566654431 123455667777766655432 34556
Q ss_pred ccccCCChhhHhhhcCH-HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcC
Q psy15051 864 WMVGGHSITRIATRYSP-DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPF 942 (1065)
Q Consensus 864 ~flenHD~~Rl~s~~~~-~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m 942 (1065)
+|+ |++|+.++++. +++|+++++++|+||+|+||||||+||.+.... .| ..+|.+|
T Consensus 227 ~~~---d~~r~~s~~~~~~~~k~~~~lllt~pG~P~iY~GeE~G~~~~~~~----~~----------------~~~r~~m 283 (424)
T 2dh2_A 227 WSL---SQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAAALP----GQ----------------PMEAPVM 283 (424)
T ss_dssp ECS---CSSCCGGGTSCHHHHHHHHHHHTTSSSEEEEETTGGGTCCGGGSS----SC----------------CSSSCCC
T ss_pred eee---cCcchhhhcCCHHHHHHHHHHHHHCCCCeEEEeceecCCcCCCCC----CC----------------cccCCCC
Confidence 676 56787777654 578999999999999999999999999985210 11 2268899
Q ss_pred CCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEc-CCc
Q psy15051 943 QWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTE-GST 1021 (1065)
Q Consensus 943 ~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~-~~~ 1021 (1065)
+|+...+ +.+|+++++ .+|++.|..++.+++++||+|++|||++|+|+.|+++.+..+++++||.|.. +++
T Consensus 284 ~W~~~~~-----~~~w~~~~~---~~nv~~q~~~~~s~~~~yr~Li~lRk~~~~l~~G~~~~~~~~~~v~a~~R~~~~~~ 355 (424)
T 2dh2_A 284 LWDESSF-----PDIPGAVSA---NMTVKGQSEDPGSLLSLFRRLSDQRSKERSLLHGDFHAFSAGPGLFSYIRHWDQNE 355 (424)
T ss_dssp CSSTTSC-----TTSTTCCCG---GGSHHHHHTCTTSHHHHHHHHHHHHHHCHHHHHCEEEEEBCCTTEEEEEEECTTSC
T ss_pred CCCccCC-----CCCCccccc---ccCHHhhhcCcHHHHHHHHHHHHHHhcChhhhcCceEEEecCCCEEEEEEEcCCCC
Confidence 9987543 268988754 5899999989999999999999999999999999999988888999999996 478
Q ss_pred EEEEEEECCCCcEEEEcCC-----CccCCCcEEEEEccCC
Q psy15051 1022 SVYLIINLNSRTETVDLSD-----CIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1022 ~vlVv~N~s~~~~~v~l~~-----~~~~~~~~~v~~~s~~ 1056 (1065)
.++||+|+++++++++++. ...+|+.+++++++..
T Consensus 356 ~~lvv~N~s~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 395 (424)
T 2dh2_A 356 RFLVVLNFGDVGLSAGLQASDLPASASLPAKADLLLSTQP 395 (424)
T ss_dssp EEEEEEECSSSCEECCCBCSSSCGGGCCCSEEEEEEESSS
T ss_pred EEEEEEECCCCCEEEecccccccccccccccceEEEecCC
Confidence 9999999999999988742 1234556677777654
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=495.06 Aligned_cols=365 Identities=22% Similarity=0.323 Sum_probs=285.1
Q ss_pred ccCChhhccc--ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC--C
Q psy15051 550 RCNQKEWWKN--TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--G 625 (1065)
Q Consensus 550 ~~~~~~ww~~--~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--~ 625 (1065)
+...+.||++ .||||+++++|. |||+ ||+++|+|||+||||+|||+||++++. .
T Consensus 86 ~~~~~~W~~~~~~viY~~~~~~f~-------Gdl~---------------gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~ 143 (628)
T 1g5a_A 86 RENNPDWILSNKQVGGVCYVDLFA-------GDLK---------------GLKDKIPYFQELGLTYLHLMPLFKCPEGKS 143 (628)
T ss_dssp HHTCGGGGGCTTCCEEEECHHHHH-------SSHH---------------HHHTTHHHHHHHTCSEEEECCCBCCCSSCS
T ss_pred cccCcccccCCCcEEEEEchhhhC-------CCHH---------------HHHHHHHHHHHcCCCEEEeCCCCCCCCCCC
Confidence 3446789987 799999999995 8999 999999999999999999999999985 5
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++||++||++|
T Consensus 144 ~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~a--------------------------------------------------- 172 (628)
T 1g5a_A 144 DGGYAVSSYRDVNPALGTIGDLREVIAAL--------------------------------------------------- 172 (628)
T ss_dssp TTTTSCSCSSSBCTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCcCCcccCCcCccCCCHHHHHHHHHHH---------------------------------------------------
Confidence 79999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCC-----------CCCCCCCCCCc
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLN-----------GKPGTPPNNWK 774 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~d-----------G~p~~~~~~W~ 774 (1065)
|++||+||+|+|+||+|.+|+||.++..+.++|.+||++.+... .+|...+.+|.
T Consensus 173 --------------h~~GI~VilD~V~NH~s~~~~wf~~~~~g~~~y~d~y~~~~~~~~P~~~~~~~~~~f~~~~~~~~~ 238 (628)
T 1g5a_A 173 --------------HEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFS 238 (628)
T ss_dssp --------------HHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEE
T ss_pred --------------HHCCCEEEEEEecCcccccchhHHHHhcCCCccccccccCCCCCCcccccccccccCCCCCCCccc
Confidence 99999999999999999999999998888889999999864310 01111122221
Q ss_pred -----------------cccCCCHHHHHHHHHHHHh--------------------------------------------
Q psy15051 775 -----------------HINITSREVMRSQKDVVQS-------------------------------------------- 793 (1065)
Q Consensus 775 -----------------~ln~~n~~v~~~l~~~lk~-------------------------------------------- 793 (1065)
.||+.||+|+++|.++++.
T Consensus 239 ~~~~~~~~~~~f~~~~pdLN~~np~V~~~i~~~l~~w~~~GvDGfRlDa~~~i~k~~g~~~~~~p~~~~~~~~~r~~~~~ 318 (628)
T 1g5a_A 239 QLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRI 318 (628)
T ss_dssp ECTTSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHTTTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEeccCCCCCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecccccccccCccccCcHHHHHHHHHHHHHHHH
Confidence 2899999999999998221
Q ss_pred cCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCC
Q psy15051 794 FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHS 870 (1065)
Q Consensus 794 ~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD 870 (1065)
..|+++++||.|.. +.....|++. .++++.|++.+...+.. ..+...+...+..... .+......+|++|||
T Consensus 319 ~~p~~~~igE~~~~-~~~~~~y~~~---~~~~~~y~f~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~nfl~nHD 393 (628)
T 1g5a_A 319 AAPAVFFKSEAIVH-PDQVVQYIGQ---DECQIGYNPLQMALLWNTLATREVNLLHQALTYRHN-LPEHTAWVNYVRSHD 393 (628)
T ss_dssp HCTTCEEEECCCSC-HHHHGGGBST---TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCC-CCTTCEEEEESCCSS
T ss_pred hCCCeEEEEEecCC-HHHHHHhhCC---CCcceeecHHHHHHHHHhhccCCHHHHHHHHHHhhc-ccCCCeeEeehhccc
Confidence 23579999999975 6777788874 35889999887654421 3455667776665432 233322346999999
Q ss_pred h--------------------hhHhhhc----------------------------------C--------HHHHHHHHH
Q psy15051 871 I--------------------TRIATRY----------------------------------S--------PDLVDAMNM 888 (1065)
Q Consensus 871 ~--------------------~Rl~s~~----------------------------------~--------~~~~kla~~ 888 (1065)
+ .|+.+.+ | .++++++++
T Consensus 394 ~i~~~~~~~~~~~~g~~~~~~~r~l~~~~~g~~~~s~~~g~~~~~n~d~~d~Ri~~~~as~~g~~~~~~~~~~~~~la~a 473 (628)
T 1g5a_A 394 DIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYS 473 (628)
T ss_dssp CBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTTHHHHHHHHHH
T ss_pred cccccccchhhhhccccchhHHHHHHHHhcCccccccccccccccCccchhhhhccccccccccccchhhHHHHHHHHHH
Confidence 5 4443321 1 246789999
Q ss_pred HHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccc
Q psy15051 889 LTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTL 968 (1065)
Q Consensus 889 ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~ 968 (1065)
++|++||+|+||||+|+|+.+.. +...||... ..+|+.+|.+|+|+.....+|..
T Consensus 474 ~llt~pG~P~IY~G~EiG~~~~~---~~~~dp~~~--------~~~R~~~R~~~~W~~~~~~~~~~-------------- 528 (628)
T 1g5a_A 474 IALSTGGLPLIYLGDEVGTLNDD---DWSQDSNKS--------DDSRWAHRPRYNEALYAQRNDPS-------------- 528 (628)
T ss_dssp HHHHSSSEEEEETTGGGTCCCCS---SGGGCTTTT--------TCGGGGGCCCCCHHHHTTTTCTT--------------
T ss_pred HHHhCCCCcEEEecccccCCCCc---ccccCchhc--------ccCcccCCCCCCcchhhhccCCC--------------
Confidence 99999999999999999999852 112355422 23678899999998755433311
Q ss_pred cHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccC-CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 969 NAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 969 ~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~-~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
..+.+++++||+|++||+++|+|+.|+++.+..+ ++++||.|.. .++||+|+++++++++++.
T Consensus 529 ------~~~~~l~~~~~~Li~lRk~~pal~~g~~~~l~~~~~~v~af~R~~---~~lvv~N~s~~~~~~~l~~ 592 (628)
T 1g5a_A 529 ------TAAGQIYQDLRHMIAVRQSNPRFDGGRLVTFNTNNKHIIGYIRNN---ALLAFGNFSEYPQTVTAHT 592 (628)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHCGGGCSSCCEECCCSCTTEEEEEETT---TEEEEEECSSSCEEECTTT
T ss_pred ------CcHHHHHHHHHHHHHHHhhCccccCCceEEEecCCCcEEEEEEeC---cEEEEEeCCCCcEEEeccc
Confidence 1124699999999999999999999999988765 5899999976 6999999999999999875
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=499.13 Aligned_cols=377 Identities=21% Similarity=0.368 Sum_probs=287.8
Q ss_pred CChhhcccceEEEEecccccCcCCCCC---CCC------------C-------CcccchhhhcccccccHHhhhHHHHH-
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNNDGI---GDL------------R-------GKNVRKRYLELTLGLGIIEKIDYLKE- 608 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~d~~---Gdl------------~-------g~~~~~~~~~~t~~~Gl~~kLdYLk~- 608 (1065)
..+.||+++|||||+|++|+++++++. +.+ . .....+.|+|||+ +||+++|||||+
T Consensus 125 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~f~gG~~-~gi~~~LdyLk~~ 203 (637)
T 1ji1_A 125 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDL-AGIDQKLGYIKKT 203 (637)
T ss_dssp CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCH-HHHHHTHHHHHTT
T ss_pred CCCchhhCCcEEEEecccccCCCCcccccccccccccccccccccccCcccccccCCcccccCcCH-HHHHHhHHHHHhc
Confidence 468899999999999999998775421 100 0 0113355677777 799999999999
Q ss_pred cCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccc
Q psy15051 609 LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKF 688 (1065)
Q Consensus 609 LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~ 688 (1065)
||||+||||||++++. +|||++.||++|||+|||++|||+||++|
T Consensus 204 LGvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~LV~~~---------------------------------- 248 (637)
T 1ji1_A 204 LGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDI---------------------------------- 248 (637)
T ss_dssp TCCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHH----------------------------------
T ss_pred cCCCEEEECCCccCCC-CCCcCccchhhhccccCCHHHHHHHHHHH----------------------------------
Confidence 9999999999999987 59999999999999999999999999999
Q ss_pred cccccccCccccCCCCCCCccCcccchhhhhhhcC--c--EEEEEeccCCCCCCchhhHhhhc---------cCCCCCcc
Q psy15051 689 AIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAG--M--KILVEFVPNHSSNKHDWFIKSAQ---------KIDPYTNY 755 (1065)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~G--i--~vIlDvV~NHts~~~~wf~~~~~---------~~~~~~d~ 755 (1065)
|++| | +||||+|+||++.+|+||..... .+++|.+|
T Consensus 249 -------------------------------H~~G~~I~~~VIlD~V~NH~~~~~~~f~~~~~f~~~g~y~~~~~py~~~ 297 (637)
T 1ji1_A 249 -------------------------------HSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNY 297 (637)
T ss_dssp -------------------------------HCSSSSSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTCTTGGG
T ss_pred -------------------------------HhCCCCccceEEEEECcccCCCCcHHHhhhhccCccccccCCCCccccc
Confidence 8899 9 99999999999999999987654 25678999
Q ss_pred eeecCCCCCCCCCCCCCCc-----cccCCCH--HHHHHH----HHHH----Hh---------------------------
Q psy15051 756 YVWKDGLNGKPGTPPNNWK-----HINITSR--EVMRSQ----KDVV----QS--------------------------- 793 (1065)
Q Consensus 756 y~~~~~~dG~p~~~~~~W~-----~ln~~n~--~v~~~l----~~~l----k~--------------------------- 793 (1065)
|.+.+.. +. ....|+ .||+.|| +|+++| .+++ ++
T Consensus 298 y~~~~~~-~~---~~~~~g~~~~pdln~~~p~~~Vr~~i~~~~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~~~~~~~~~ 373 (637)
T 1ji1_A 298 YTFYTWP-DS---YASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTN 373 (637)
T ss_dssp BCEEETT-TE---ECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTTCCCSSHHH
T ss_pred cccCCCC-CC---cccccCCCCcccccccCChHHHHHHHHhhhHHHHHHHHhCcCCCCEEEEEchhhhhccCccccccch
Confidence 9887532 11 111222 2999999 999999 5541 11
Q ss_pred -------------cCCceEEEeecCCCChHHHhhhccCCCCccccccccH-----HHHHHhhc--------CCChHHHHH
Q psy15051 794 -------------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNY-----EIMNKFGA--------TSNAKDLEN 847 (1065)
Q Consensus 794 -------------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~-----~~~~~~~~--------~~~~~~l~~ 847 (1065)
..|++++|||.|.... .|+..+ .+++..+++ .+...+.+ ......+..
T Consensus 374 ~~fl~~~~~~v~~~~p~~~ligE~~~~~~----~~~~~g--~~~d~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (637)
T 1ji1_A 374 HQIWSEFRNAVKGVNSNAAIIGEYWGNAN----PWTAQG--NQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDS 447 (637)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECCSSCCG----GGTTTS--SSCSEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEecCCch----hhhccC--CccceEEecHHHHHHHHHHhcCCccccccCCCCHHHHHH
Confidence 2247899999998632 233111 345555554 34444433 245677777
Q ss_pred HHHHHhhcCCCC--CcccccccCCChhhHhhhcC--HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccc
Q psy15051 848 VVNAYLKSLPSG--KWSSWMVGGHSITRIATRYS--PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGY 923 (1065)
Q Consensus 848 ~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~ 923 (1065)
.+......++.. ....+|++|||+.|+.++++ .++++++++++|++||+||||||||+|+.+. .||.
T Consensus 448 ~l~~~~~~~~~~~~~~~~~f~~nHD~~rl~~~~~g~~~~~~~a~a~ll~~pG~P~iy~GdE~G~~~~-------~d~~-- 518 (637)
T 1ji1_A 448 WLRGTRANYPTNVQQSMMNFLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGG-------ADPD-- 518 (637)
T ss_dssp HHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCC-------STTG--
T ss_pred HHHHHHHhccccchhhceecccCCchhhHhhhcCCcHHHHHHHHHHHHhCCCCceEEeeeccccCCC-------CCCc--
Confidence 777665555422 12346999999999999986 4678999999999999999999999999875 2433
Q ss_pred ccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeE
Q psy15051 924 IFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK 1003 (1065)
Q Consensus 924 ~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~ 1003 (1065)
+|.+|+|+... ...+++++||+|++||+++|+|+.|+++
T Consensus 519 --------------~r~~~~W~~~~---------------------------~~~~l~~~~~~Li~lRk~~~al~~g~~~ 557 (637)
T 1ji1_A 519 --------------NRRSFDWSQAT---------------------------PSNSAVALTQKLITIRNQYPALRTGSFM 557 (637)
T ss_dssp --------------GGCCCCTTSSS---------------------------TTSHHHHHHHHHHHHHHHCHHHHHSEEE
T ss_pred --------------ccCCCCCCcCC---------------------------ChHHHHHHHHHHHHHHhhChHhhcCceE
Confidence 67899998632 2467999999999999999999999998
Q ss_pred EEccCC--cEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCc-cCC--CcEEEEEccC
Q psy15051 1004 ISTPNN--YVFILTRTEGSTSVYLIINLNSRTETVDLSDCI-ENG--GDVAIFTSSV 1055 (1065)
Q Consensus 1004 ~l~~~~--~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~-~~~--~~~~v~~~s~ 1055 (1065)
.+..++ ++++|.|..+++.++||+|++.++++++|+... .+| +.++.++++.
T Consensus 558 ~~~~~~~~~v~a~~R~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 614 (637)
T 1ji1_A 558 TLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGH 614 (637)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEECSSSCEEEEECGGGGTCCTTCEEEETTTCC
T ss_pred EEEeCCCeEEEEEEEEcCCCEEEEEEECCCCCEEEecCccccccCCCceEEEeccCc
Confidence 877543 579999998888999999999999999987542 233 5566666543
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=498.51 Aligned_cols=365 Identities=25% Similarity=0.379 Sum_probs=281.2
Q ss_pred Chhhccc--ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC--CCCC
Q psy15051 553 QKEWWKN--TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--GDIG 628 (1065)
Q Consensus 553 ~~~ww~~--~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--~~~G 628 (1065)
.+.||++ +|||||++++|. |||+ ||+++|+|||+||||+||||||++++. .+||
T Consensus 82 ~~~W~~~~~~viY~i~~~~F~-------Gdl~---------------gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~G 139 (644)
T 3czg_A 82 HAGWFGQPHMLGYSAYADRFA-------GTLQ---------------GVAERVPYLQELGVRYLHLLPFLRARAGDNDGG 139 (644)
T ss_dssp CTTGGGSTTCCEEEECHHHHH-------SSHH---------------HHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTT
T ss_pred CCccccCCCcEEEEEechhhC-------CCHH---------------HHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCC
Confidence 5789998 899999999995 8999 999999999999999999999999985 5799
Q ss_pred CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCc
Q psy15051 629 YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708 (1065)
Q Consensus 629 Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 708 (1065)
|++.||++|||+|||++||++||++|
T Consensus 140 Y~~~dy~~vdp~~Gt~~df~~Lv~~a------------------------------------------------------ 165 (644)
T 3czg_A 140 FAVSDYGQVEPSLGSNDDLVALTSRL------------------------------------------------------ 165 (644)
T ss_dssp TSBSCTTSBCGGGCCHHHHHHHHHHH------------------------------------------------------
T ss_pred cCcccccccCcccCCHHHHHHHHHHH------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred cCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC-----------CCCCCCCCCCCc---
Q psy15051 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL-----------NGKPGTPPNNWK--- 774 (1065)
Q Consensus 709 ~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~-----------dG~p~~~~~~W~--- 774 (1065)
|++||+||+|+|+||++.+|+||..+..+.++|.+||++.+.. ..+|...+.+|.
T Consensus 166 -----------H~~GI~VilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~~ 234 (644)
T 3czg_A 166 -----------REAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVD 234 (644)
T ss_dssp -----------HHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHHHCCCC------CCEEEET
T ss_pred -----------HHCCCEEEEEEecCCcccchhhHHHHhcCCCcccCceecCCCCCCCcchhhcccccCCCCCCCCccccC
Confidence 9999999999999999999999999887777899999886531 011111122331
Q ss_pred ---------------cccCCCHHHHHHHHHHHHh--------------------------------------------cC
Q psy15051 775 ---------------HINITSREVMRSQKDVVQS--------------------------------------------FP 795 (1065)
Q Consensus 775 ---------------~ln~~n~~v~~~l~~~lk~--------------------------------------------~~ 795 (1065)
.||+.||+|+++|.++++. ..
T Consensus 235 ~~~~~~~~~f~~~~pdLN~~np~V~~~i~~~~~~wl~~GvDGfRlDa~~~i~~~~~~~~~n~p~~~~~l~~~r~~~~~~~ 314 (644)
T 3czg_A 235 DTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVA 314 (644)
T ss_dssp TTTEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHHTTEEEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCceEecccccCCCcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecccccccccCCcccCcHHHHHHHHHHHHHHHHhC
Confidence 2999999999999998221 23
Q ss_pred CceEEEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCC
Q psy15051 796 LILMIITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHS 870 (1065)
Q Consensus 796 ~~~~ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD 870 (1065)
|+++++||.|.. +.....|++.+. ..+++++|++.+...+.. ..+...+...+..... .+......+|++|||
T Consensus 315 p~~~ligE~~~~-~~~~~~y~~~~~~~~~~~~~~ynf~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~nfl~nHD 392 (644)
T 3czg_A 315 PAVVMKAEAIVP-MTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPP-LPRHCAWLSYVRCHD 392 (644)
T ss_dssp TTCEEEEECCSC-GGGSGGGGCCGGGTTSSCSEEECHHHHHHHHHHHHHTCTHHHHHHHHTCCC-CCTTCEEEEESCCSS
T ss_pred CCeEEEEEecCC-HHHHHHhhCCCcccccccceeechHHHHHHHHHhccCCHHHHHHHHHhhhc-cCCCCeeeEEeccCc
Confidence 579999999975 666777876432 246889999887654321 2345566666654332 222223336999999
Q ss_pred h--------------------hhHhhhc---------------------------------C----------------HH
Q psy15051 871 I--------------------TRIATRY---------------------------------S----------------PD 881 (1065)
Q Consensus 871 ~--------------------~Rl~s~~---------------------------------~----------------~~ 881 (1065)
+ .|+.+.+ | .+
T Consensus 393 ~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~g~~~~s~~~G~~y~~N~t~d~Ri~g~las~~g~~~a~~~~d~~~~~~~~~ 472 (644)
T 3czg_A 393 DIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAGDAAALAVAVD 472 (644)
T ss_dssp CBCGGGGHHHHTCCSSSCCCCHHHHHHHHTTCSTTCCCCCEEC-----CCCCEECCHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred ccccccchhhhhhccccchhhHHHHHHhhcCCCCcccccCcccccCCccccccccccccccchhhhhccccchhhhhHHH
Confidence 5 4544321 1 24
Q ss_pred HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCC
Q psy15051 882 LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPV 961 (1065)
Q Consensus 882 ~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~ 961 (1065)
+++++++++|++||+|+||||+|+|+.+.. +...||... ..+|+.+|.+|+|+.....+|..
T Consensus 473 r~~la~a~llt~pG~P~IY~GdE~G~~~~~---~~~~dp~~~--------~~~R~~~R~~m~W~~~~~~~~~~------- 534 (644)
T 3czg_A 473 RLVLLYAIALAMPGVPLIYMGDELAMVNDP---GYRDDPHRQ--------HEGRWLHRPAMDWQLAAQRHDAK------- 534 (644)
T ss_dssp HHHHHHHHHHTSSEEEEEETTGGGTCCCCG---GGGGSGGGT--------TCGGGGGCCCCCHHHHHGGGCTT-------
T ss_pred HHHHHHHHHHHcCCcceEEcchhhcCCCCc---ccccChhhc--------ccccccCCCCCCcchhhhccCCc-------
Confidence 678899999999999999999999999852 112455432 24678899999998654333211
Q ss_pred CCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-CeEEEccC-CcEEEEEEEcCCcEEEEEEECCCCcEEEEcC
Q psy15051 962 HPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-DYKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-~~~~l~~~-~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~ 1039 (1065)
..+.+++++||+|++||+++|+|+.| +++.+..+ +++++|.| ++.++||+|+++++++++++
T Consensus 535 -------------~~~~~l~~~~~~Li~lRk~~pal~~g~~~~~l~~~~~~vlaf~R---~~~~lvv~N~s~~~~~~~l~ 598 (644)
T 3czg_A 535 -------------SLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTR---GDSFIALHNFSDQLLDVELA 598 (644)
T ss_dssp -------------SHHHHHHHHHHHHHHHHHTCGGGSTTSCEEEECCSCTTEEEEEE---TTTEEEEEECSSSCEEECGG
T ss_pred -------------ccHHHHHHHHHHHHHHHHhCccccCCCeeEEEecCCCCEEEEEE---CCeEEEEEECCCCCEEEecC
Confidence 11256999999999999999999988 89888764 68999999 56799999999999999886
Q ss_pred C
Q psy15051 1040 D 1040 (1065)
Q Consensus 1040 ~ 1040 (1065)
.
T Consensus 599 ~ 599 (644)
T 3czg_A 599 A 599 (644)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=466.97 Aligned_cols=356 Identities=19% Similarity=0.288 Sum_probs=258.5
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-------C
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-------G 625 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-------~ 625 (1065)
+++||+++||||||||+|+++++++... +....+.|++||+ +||+++|||||+||||+||||||++++. .
T Consensus 2 ~~~~w~~~viYqi~~~~F~~~~~~~~~~--~~~~~~~~~gG~~-~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~ 78 (484)
T 2aaa_A 2 SAASWRTQSIYFLLTDRFGRTDNSTTAT--CNTGNEIYCGGSW-QGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEA 78 (484)
T ss_dssp CHHHHTTCCEEECCHHHHCCTTCCSCCC--CCGGGCSCCCCCH-HHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCS
T ss_pred ChhhhccCcEEEEeCccccCCCCCCCCC--CCccccccCCCCH-HHHHHHHHHHHhcCCCEEEeCccccCcccccccCCC
Confidence 4678999999999999999988765421 2233456666666 6999999999999999999999999763 4
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++|||+||++|
T Consensus 79 ~~GY~~~dy~~id~~~Gt~~df~~lv~~~--------------------------------------------------- 107 (484)
T 2aaa_A 79 YHGYWQQKIYDVNSNFGTADNLKSLSDAL--------------------------------------------------- 107 (484)
T ss_dssp TTSCSEEEEEEECTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCcCcccccccCcccCCHHHHHHHHHHH---------------------------------------------------
Confidence 69999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCC-----------CCCCC--CCCCCC
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDG-----------LNGKP--GTPPNN 772 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~-----------~dG~p--~~~~~~ 772 (1065)
|++||+||+|+|+||++.+++. ++.+|+.|... ..... ......
T Consensus 108 --------------H~~Gi~VilD~V~NH~~~~~~~---------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (484)
T 2aaa_A 108 --------------HARGMYLMVDVVPDHMGYAGNG---------NDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDC 164 (484)
T ss_dssp --------------HTTTCEEEEEECCSBCCBSSCG---------GGCCGGGSBSCCSGGGBCCCCBCCCTTCHHHHHHS
T ss_pred --------------HHCCCEEEEEECcCCcCCCCCC---------CcccccccccCCcccccCCCCCcccCCCCcccccc
Confidence 7777777777777777765441 01122111100 00000 000013
Q ss_pred Cc--------cccCCCHHHHHHHHHHHHh----c-----------------------CCceEEEeecCCCChHHHhhhcc
Q psy15051 773 WK--------HINITSREVMRSQKDVVQS----F-----------------------PLILMIITEAYSPSLEKVAKYYG 817 (1065)
Q Consensus 773 W~--------~ln~~n~~v~~~l~~~lk~----~-----------------------~~~~~ligE~~~~~~~~~~~y~~ 817 (1065)
|. .||+.||+|+++|.++++. + .++++++||.|...+.....|.+
T Consensus 165 w~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~~~~i~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~~~ 244 (484)
T 2aaa_A 165 WEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDCPYQK 244 (484)
T ss_dssp BEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGGGG
T ss_pred ccccCccccCccccCCHHHHHHHHHHHHHHHHhcCCCEEEecccccCCHHHHHHHHhcCCcEEEecCCCCChHHHHhhcc
Confidence 42 1999999999999998442 1 12789999999887776665543
Q ss_pred CCCCccccccccHHHHH----Hhh-cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH-HHHHHHHHHHH
Q psy15051 818 TGDTQGTHLSVNYEIMN----KFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP-DLVDAMNMLTL 891 (1065)
Q Consensus 818 ~~~~~~~d~~~~~~~~~----~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~-~~~kla~~ll~ 891 (1065)
+++..+++.+.. .+. ...+...+...+......++......+|++|||+.|+.+.++. ++++++++++|
T Consensus 245 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~a~a~~l 319 (484)
T 2aaa_A 245 -----VLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIF 319 (484)
T ss_dssp -----TSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHH
T ss_pred -----cCCceeccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCChhhhceeccCCCccccccccCCHHHHHHHHHHHH
Confidence 255556655544 343 2456777877777665556655566679999999999998854 57889999999
Q ss_pred hCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHH
Q psy15051 892 LLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQ 971 (1065)
Q Consensus 892 tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~ 971 (1065)
++||+||||||+|+|+.+.. ||. +|.+| |... |
T Consensus 320 ~~~G~P~iy~G~E~g~~~~~-------d~~----------------~r~~~-W~~~----~------------------- 352 (484)
T 2aaa_A 320 LSDGIPIVYAGEEQHYAGGK-------VPY----------------NREAT-WLSG----Y------------------- 352 (484)
T ss_dssp HSSSEEEEETTTTTTCCCCT-------TTT----------------TCCCG-GGGT----T-------------------
T ss_pred hcCCccEEEecccccccCCC-------Ccc----------------hhhhc-cccC----C-------------------
Confidence 99999999999999998742 332 45555 7641 1
Q ss_pred HhhcCCCcHHHHHHHHHHHHHhccccc----CCCeEEEccCCcEEEEEEEcC-CcEEEEEEECCCC--cEEEEcCC
Q psy15051 972 AEKKTKPSHYSVYKDLTTLRATSGAVR----MGDYKISTPNNYVFILTRTEG-STSVYLIINLNSR--TETVDLSD 1040 (1065)
Q Consensus 972 ~~~~~~~~l~~~~r~Li~LRk~~paL~----~G~~~~l~~~~~viaf~R~~~-~~~vlVv~N~s~~--~~~v~l~~ 1040 (1065)
....+++++||+|++||+++++++ .|.++.+..++++++|.|..+ ++.++|++|++.+ .++++++.
T Consensus 353 ---~~~~~l~~~~~~Li~lRk~~~~~~~~~~~~~~~~~~~~~~~~af~R~~~~~~~~~v~~N~~~~~~~~~~~l~~ 425 (484)
T 2aaa_A 353 ---DTSAELYTWIATTNAIRKLAIAADSAYITYANDAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTLSG 425 (484)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHCTTTTTSCCEEEEEETTEEEEEESSTTTCEEEEEECSCTTCCCEEEEECC
T ss_pred ---CCchHHHHHHHHHHHHHHhchhhcccccccceeEEEeCCCEEEEEEEcCCCcEEEEEEcCCCCCceEEEeccc
Confidence 123579999999999999998874 345566666778999999854 4678888999865 56777764
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=484.17 Aligned_cols=362 Identities=24% Similarity=0.341 Sum_probs=254.8
Q ss_pred ChhhcccceEEEEecccccCcCCCC--CCC----CCCc-ccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC--
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDG--IGD----LRGK-NVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-- 623 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~--~Gd----l~g~-~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-- 623 (1065)
+|.||+++|||||+||||.++++++ .|. +.|. ...+.|++|++ +||+++|||||+||||+|||+||+++.
T Consensus 2 ~~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl-~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~ 80 (686)
T 1qho_A 2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDL-EGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (686)
T ss_dssp TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCH-HHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CcccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCH-HHHHHhhHHHHhcCCCEEEECccccCCcc
Confidence 5788999999999999999987642 121 1111 12346778887 899999999999999999999999862
Q ss_pred ------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCc
Q psy15051 624 ------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNP 697 (1065)
Q Consensus 624 ------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 697 (1065)
..+|||++.||++|||+|||++||++||++||++
T Consensus 81 ~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~---------------------------------------- 120 (686)
T 1qho_A 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN---------------------------------------- 120 (686)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHT----------------------------------------
T ss_pred cccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHC----------------------------------------
Confidence 3569999999999999999999999999999544
Q ss_pred cccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc---hhhHhhhc--------cC--C-CCCcceeecCCCC
Q psy15051 698 VYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH---DWFIKSAQ--------KI--D-PYTNYYVWKDGLN 763 (1065)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~---~wf~~~~~--------~~--~-~~~d~y~~~~~~d 763 (1065)
||+||+|+|+||++..| +||.+... +. . .+.+||....+..
T Consensus 121 -------------------------GikVilD~V~NHts~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~f~~~~~i~ 175 (686)
T 1qho_A 121 -------------------------GIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDIS 175 (686)
T ss_dssp -------------------------TCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCBCS
T ss_pred -------------------------CCEEEEEeccccccccccccccccccCccccCCcccccCCCCcccCeeecCCCcC
Confidence 55555555555555444 22221100 00 0 0123332111000
Q ss_pred CC-CC--CCCCCC--------ccccCCCHHHHHHHHHHHHh-------------------------------cCCceEEE
Q psy15051 764 GK-PG--TPPNNW--------KHINITSREVMRSQKDVVQS-------------------------------FPLILMII 801 (1065)
Q Consensus 764 G~-p~--~~~~~W--------~~ln~~n~~v~~~l~~~lk~-------------------------------~~~~~~li 801 (1065)
.. +. .....+ ..||+.||+||++|.++++. .. +++++
T Consensus 176 ~w~~~~~~~y~~~~~~~~~~~pDLn~~np~Vr~~l~~~~~~Wl~~GVDGfRlDa~~~i~~~f~~~~~~~v~~~~-~~~~v 254 (686)
T 1qho_A 176 NWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKSLADKLYQKK-DIFLV 254 (686)
T ss_dssp CTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHC-CCEEE
T ss_pred cCCCCcccceeecccCCcCCCCccccCCHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHhcC-CceEE
Confidence 00 00 000000 11999999999999998332 22 58999
Q ss_pred eecCCCC-h----HHHhhhccCCCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHh
Q psy15051 802 TEAYSPS-L----EKVAKYYGTGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIA 875 (1065)
Q Consensus 802 gE~~~~~-~----~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~ 875 (1065)
||.|..+ . .....|.+.+....+++.|...+.+.+.. ..+...+.+.+......++...+..+|++|||++|+.
T Consensus 255 gE~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~fl~NHD~~R~~ 334 (686)
T 1qho_A 255 GEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFL 334 (686)
T ss_dssp ECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCHH
T ss_pred eeeecCCCcccchhhhhhhcccCCCeeeccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccchhhceeeccCCCCcccc
Confidence 9999753 1 12333332221233556666666665543 4567788888887766666656677899999999999
Q ss_pred hhcC-HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCC
Q psy15051 876 TRYS-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954 (1065)
Q Consensus 876 s~~~-~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~ 954 (1065)
+..+ .++++++++++|++||+|+||||+|+||.+.. ||. +|.+|+|-..
T Consensus 335 s~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~~-------d~~----------------~R~~~~~~~~------- 384 (686)
T 1qho_A 335 SVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGN-------DPY----------------NRGMMPAFDT------- 384 (686)
T ss_dssp HHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCS-------TTT----------------TCCCCCCCCT-------
T ss_pred ccCCCHHHHHHHHHHHHcCCCcCEEEecccccccCCC-------Ccc----------------ccccCCCCCC-------
Confidence 9433 35789999999999999999999999998742 332 5777763211
Q ss_pred CCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc
Q psy15051 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT 1033 (1065)
Q Consensus 955 ~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~ 1033 (1065)
..+++++||+|++|||++|+|+.|+++.+..++++++|.|..+++.++|++|++.+.
T Consensus 385 ----------------------~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~~~ 441 (686)
T 1qho_A 385 ----------------------TTTAFKEVSTLAGLRRNNAAIQYGTTTQRWINNDVYIYERKFFNDVVLVAINRNTQS 441 (686)
T ss_dssp ----------------------TSHHHHHHHHHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCTTC
T ss_pred ----------------------CcHHHHHHHHHHHHHhhCHHhhcCceEEEeeCCCEEEEEEECCCcEEEEEEECCCCC
Confidence 246889999999999999999999999888888999999998889999999999765
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=477.29 Aligned_cols=352 Identities=22% Similarity=0.343 Sum_probs=253.6
Q ss_pred hhhcccceEEEEecccccCcCCCC--CCCC-CCc-ccchhhhcccccccHHhhhH--HHHHcCcCEEEeCCCCcCC----
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDG--IGDL-RGK-NVRKRYLELTLGLGIIEKID--YLKELGVETLWLTPFYSGP---- 623 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~--~Gdl-~g~-~~~~~~~~~t~~~Gl~~kLd--YLk~LGvnaI~L~PI~~~~---- 623 (1065)
...|+++||||||||||.++++++ .+.+ .|. ...+.|++|++ +||+++|| |||+||||+|||+||+++.
T Consensus 9 ~~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl-~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~ 87 (683)
T 3bmv_A 9 VVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDW-QGIINKINDGYLTGMGVTAIWIPQPVENIYAVL 87 (683)
T ss_dssp TTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCH-HHHHHHHHTSTTGGGTCCEEEECCCEEECCCCE
T ss_pred cCCCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCH-HHHHHhcCHHHHHHcCCCEEEeCccccCccccc
Confidence 345899999999999999987642 1111 100 12246777777 79999999 9999999999999999852
Q ss_pred --------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccccc
Q psy15051 624 --------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYL 695 (1065)
Q Consensus 624 --------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 695 (1065)
..+|||++.||++|||+|||++|||+||++|
T Consensus 88 ~~~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~a----------------------------------------- 126 (683)
T 3bmv_A 88 PDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTA----------------------------------------- 126 (683)
T ss_dssp EETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHH-----------------------------------------
T ss_pred ccccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHH-----------------------------------------
Confidence 3569999999999999999999999999999
Q ss_pred CccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc---hhhHhhhc--------c--CCCCCcceeecCCC
Q psy15051 696 NPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH---DWFIKSAQ--------K--IDPYTNYYVWKDGL 762 (1065)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~---~wf~~~~~--------~--~~~~~d~y~~~~~~ 762 (1065)
|++||+||+|+|+||++..| +||.+... + .....+||....+
T Consensus 127 ------------------------H~~GikVilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~- 181 (683)
T 3bmv_A 127 ------------------------HAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGG- 181 (683)
T ss_dssp ------------------------HHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB-
T ss_pred ------------------------HHCCCEEEEEEcccccccccccCcchhccCccccCCcccccCCCCcccccccCCC-
Confidence 66666666666666666554 33322100 0 0011233321110
Q ss_pred CCCCCCCCCCCc--------------cccCCCHHHHHHHHHHHHh-------------------------------cCCc
Q psy15051 763 NGKPGTPPNNWK--------------HINITSREVMRSQKDVVQS-------------------------------FPLI 797 (1065)
Q Consensus 763 dG~p~~~~~~W~--------------~ln~~n~~v~~~l~~~lk~-------------------------------~~~~ 797 (1065)
..|. .||+.||+|+++|.++++. .+ +
T Consensus 182 --------~~w~~~~~~~y~~~~~~pdLn~~np~Vr~~i~~~l~~Wl~~GVDGfRlDa~~~i~~~f~~~~~~~v~~~~-~ 252 (683)
T 3bmv_A 182 --------TDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMDSILSYR-P 252 (683)
T ss_dssp --------CCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHHHHHHHHHHHHS-C
T ss_pred --------CCcCCcccccccCcCCCCCcccCCHHHHHHHHHHHHHHHhCCCCEEEEeccccCCHHHHHHHHHHHHhcC-C
Confidence 1121 1999999999999998332 22 5
Q ss_pred eEEEeecCCCChH---HHhhhccCCCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCcccccccCCChhh
Q psy15051 798 LMIITEAYSPSLE---KVAKYYGTGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITR 873 (1065)
Q Consensus 798 ~~ligE~~~~~~~---~~~~y~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~R 873 (1065)
++++||.|..... ....|.+......+++.|...+...+.. ..+...+.+.+......++......+|++|||+.|
T Consensus 253 ~~~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~fl~NHD~~R 332 (683)
T 3bmv_A 253 VFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDMDR 332 (683)
T ss_dssp CEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGGCEECSCCSSSCC
T ss_pred ceEEccccCCCcccchhhhhhhccCCCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccchhhceeeccCCCCcc
Confidence 8999999976321 2233332211133555555555555543 35677888888776666666566778999999999
Q ss_pred HhhhcCHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCC
Q psy15051 874 IATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953 (1065)
Q Consensus 874 l~s~~~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs 953 (1065)
+...-..++++++++++|++||+|+||||+|+|+.+. .||. +|.+|+|-+
T Consensus 333 ~~~~~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~-------~d~~----------------~R~~~~~~~------- 382 (683)
T 3bmv_A 333 FYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGN-------GDPY----------------NRAMMTSFN------- 382 (683)
T ss_dssp SCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCC-------STTG----------------GGCCCCCCC-------
T ss_pred cccCCCHHHHHHHHHHHHhCCCCCEEEeeeeecccCC-------CCcc----------------ccccCCCcc-------
Confidence 9821223578999999999999999999999999864 2333 466776321
Q ss_pred CCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc
Q psy15051 954 KAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT 1033 (1065)
Q Consensus 954 ~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~ 1033 (1065)
...+++++||+|++|||++|+|+.|+++.+..++++++|.|..+++.++|++|++.++
T Consensus 383 ----------------------~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~~~ 440 (683)
T 3bmv_A 383 ----------------------TSTTAYNVIKKLAPLRKSNPAIAYGTTQQRWINNDVYIYERKFGNNVALVAINRNLST 440 (683)
T ss_dssp ----------------------TTSHHHHHHHHHTTHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCSSC
T ss_pred ----------------------CCcHHHHHHHHHHHHHhhCHHhhcCcEEEEeeCCCEEEEEEEcCCeEEEEEEECCCCC
Confidence 1246899999999999999999999998887788999999998889999999999765
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=454.45 Aligned_cols=364 Identities=20% Similarity=0.295 Sum_probs=253.8
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-------C
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-------G 625 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-------~ 625 (1065)
+++||++.+|||||||||+++++++... +....+.|+|||+ +||+++|||||+||||+|||+||++++. .
T Consensus 2 ~~~~w~~~~iYqi~~~~F~~~~~~~~~~--~~~~~~~~~gG~~-~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~ 78 (478)
T 2guy_A 2 TPADWRSQSIYFLLTDRFARTDGSTTAT--CNTADQKYCGGTW-QGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDA 78 (478)
T ss_dssp CHHHHTTCCEEEECHHHHCBTTCCSSCC--CCGGGTCCCCBCH-HHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCC
T ss_pred CchhhccCcEEEEecccccCCCCCCCCC--CCCcccccCCCCH-HHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCC
Confidence 4678999999999999999987665421 2234556777776 7999999999999999999999999752 4
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++|||+||++|
T Consensus 79 ~~GY~~~d~~~idp~~Gt~~df~~lv~~~--------------------------------------------------- 107 (478)
T 2guy_A 79 YHGYWQQDIYSLNENYGTADDLKALSSAL--------------------------------------------------- 107 (478)
T ss_dssp TTSCSEEEEEEECTTSCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCCCcccccccCccCCCHHHHHHHHHHH---------------------------------------------------
Confidence 69999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc--cCCCCCcceeecCCCCCCC--CCCCCCCc-------
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ--KIDPYTNYYVWKDGLNGKP--GTPPNNWK------- 774 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~--~~~~~~d~y~~~~~~dG~p--~~~~~~W~------- 774 (1065)
|++||+||+|+|+||++.++++-..... ..-...+||.......... ......|.
T Consensus 108 --------------H~~Gi~VilD~V~NH~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~~~ 173 (478)
T 2guy_A 108 --------------HERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSL 173 (478)
T ss_dssp --------------HHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHHSBEECSSEEE
T ss_pred --------------HHCCCEEEEEECcccCCCCCCcccccccccCCCCchhhcCCCCcccCCCCCcccccccccCCCCCC
Confidence 7777777777777777765542100000 0000012222110000000 00011342
Q ss_pred -cccCCCHHHHHHHHHHHHh-----------------c----------CCceEEEeecCCCChHHHhhhccCCCCccccc
Q psy15051 775 -HINITSREVMRSQKDVVQS-----------------F----------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHL 826 (1065)
Q Consensus 775 -~ln~~n~~v~~~l~~~lk~-----------------~----------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~ 826 (1065)
.||+.||+|+++|.++++. + .++++++||.|...+..+..|.+ +++.
T Consensus 174 ~dln~~~~~V~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~~~-----~~~~ 248 (478)
T 2guy_A 174 PDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQN-----VMDG 248 (478)
T ss_dssp CBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGGGG-----TSSE
T ss_pred CeeCcCCHHHHHHHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHhcCCceEEeeecCCCchhHHhhhc-----cCcc
Confidence 2999999999999998432 1 12789999999987776665542 2445
Q ss_pred cccHHH----HHHhh-cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH-HHHHHHHHHHHhCCCeEEEE
Q psy15051 827 SVNYEI----MNKFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP-DLVDAMNMLTLLLPGTAVTF 900 (1065)
Q Consensus 827 ~~~~~~----~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~-~~~kla~~ll~tlpGiP~Iy 900 (1065)
++++.+ ...+. ...+...+...+......++......+|++|||+.|+.+..+. .+++++++++|++||+|+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~a~a~~l~~pG~P~iy 328 (478)
T 2guy_A 249 VLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIY 328 (478)
T ss_dssp EBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCcChhhceeeccCCCCcccccccCCHHHHHHHHHHHHcCCCccEEE
Confidence 555544 44443 2456677777776655555555556679999999999998754 56889999999999999999
Q ss_pred cccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcH
Q psy15051 901 AGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH 980 (1065)
Q Consensus 901 yGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l 980 (1065)
||+|+|+.+.. ||. +|.++ |... | ....++
T Consensus 329 ~G~E~g~~~~~-------~~~----------------~r~~~-W~~~----~----------------------~~~~~l 358 (478)
T 2guy_A 329 AGQEQHYAGGN-------DPA----------------NREAT-WLSG----Y----------------------PTDSEL 358 (478)
T ss_dssp TTGGGTCCCCS-------TTT----------------TCCCG-GGGT----C----------------------CTTSHH
T ss_pred eehhhccCCCC-------Ccc----------------chhhh-cccC----C----------------------CcchHH
Confidence 99999998742 322 34444 6541 1 123569
Q ss_pred HHHHHHHHHHHHhccccc----CCCeEEEccCCcEEEEEEEcC-CcEEEEEEECCCCc--EEEEcC
Q psy15051 981 YSVYKDLTTLRATSGAVR----MGDYKISTPNNYVFILTRTEG-STSVYLIINLNSRT--ETVDLS 1039 (1065)
Q Consensus 981 ~~~~r~Li~LRk~~paL~----~G~~~~l~~~~~viaf~R~~~-~~~vlVv~N~s~~~--~~v~l~ 1039 (1065)
+++||+|++||++++++. .+.++.+..++++++|.|... ++.++|++|++.++ .+++++
T Consensus 359 ~~~~~~L~~lR~~~~~~~~~~~~~~~~~~~~~~~~~af~R~~~~~~~~vv~~N~~~~~~~~~l~~~ 424 (478)
T 2guy_A 359 YKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLS 424 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCCEEEEEETTEEEEEESSTTSCEEEEEECSCTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHhhhhcCCcccccceeEEeeCCeEEEEEEEcCCCcEEEEEECCCCCCceEEEecc
Confidence 999999999999875432 223466666778999999854 45677888988654 456664
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=472.57 Aligned_cols=354 Identities=21% Similarity=0.342 Sum_probs=254.1
Q ss_pred hhcccceEEEEecccccCcCCCC--CCCC-CCc-ccchhhhcccccccHHhhhH--HHHHcCcCEEEeCCCCcCC-----
Q psy15051 555 EWWKNTVIYQILVPSFKDSNNDG--IGDL-RGK-NVRKRYLELTLGLGIIEKID--YLKELGVETLWLTPFYSGP----- 623 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F~d~~~d~--~Gdl-~g~-~~~~~~~~~t~~~Gl~~kLd--YLk~LGvnaI~L~PI~~~~----- 623 (1065)
..|+++||||||||||+++++++ .+.+ .|. ...+.|++|++ +||+++|| |||+||||+||||||+++.
T Consensus 10 ~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl-~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~ 88 (686)
T 1d3c_A 10 QNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDW-QGIINKINDGYLTGMGVTAIWISQPVENIYSIIN 88 (686)
T ss_dssp TCCTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCH-HHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEE
T ss_pred CCCccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCH-HHHHHhcCHHHHHhcCCCEEEeCCcccCCccccc
Confidence 34899999999999999987642 1111 110 12246777777 79999999 9999999999999999852
Q ss_pred ------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCc
Q psy15051 624 ------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNP 697 (1065)
Q Consensus 624 ------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 697 (1065)
..+|||++.||++|||+|||++|||+||++|
T Consensus 89 ~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~a------------------------------------------- 125 (686)
T 1d3c_A 89 YSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAA------------------------------------------- 125 (686)
T ss_dssp SSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHH-------------------------------------------
T ss_pred ccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHH-------------------------------------------
Confidence 2469999999999999999999999999999
Q ss_pred cccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc---hhhHhhhc--------c--CCCCCcceeecCCCCC
Q psy15051 698 VYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH---DWFIKSAQ--------K--IDPYTNYYVWKDGLNG 764 (1065)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~---~wf~~~~~--------~--~~~~~d~y~~~~~~dG 764 (1065)
|++||+||||+|+||++..+ +||.+... + .....+||.....
T Consensus 126 ----------------------H~~GI~VilD~V~NHts~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~--- 180 (686)
T 1d3c_A 126 ----------------------HAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGG--- 180 (686)
T ss_dssp ----------------------HHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB---
T ss_pred ----------------------HHCCCEEEEEeCcCccccccccccchhhcCccccCCcccccCCCCccCceecCCC---
Confidence 66666666666666666555 33332100 0 0011233321110
Q ss_pred CCCCCCCCCc--------------cccCCCHHHHHHHHHHHHh-------------------------------cCCceE
Q psy15051 765 KPGTPPNNWK--------------HINITSREVMRSQKDVVQS-------------------------------FPLILM 799 (1065)
Q Consensus 765 ~p~~~~~~W~--------------~ln~~n~~v~~~l~~~lk~-------------------------------~~~~~~ 799 (1065)
..|. .||+.||+|+++|.++++. .. +++
T Consensus 181 ------~~~~~~~~~~y~~~~~~pDLn~~np~Vr~~i~~~l~~Wl~~GVDGfRlDa~~~i~~~f~~~~~~~v~~~~-~~~ 253 (686)
T 1d3c_A 181 ------TDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMNAVKHMPFGWQKSFMAAVNNYK-PVF 253 (686)
T ss_dssp ------CCSSSHHHHHHSBBTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHTTS-CCE
T ss_pred ------CCcCCCccccccCcCCCCCcccCCHHHHHHHHHHHHHHHhCCCCEEEEeccccCCHHHHHHHHHHHHhcC-Cce
Confidence 1121 2999999999999998332 22 589
Q ss_pred EEeecCCCCh---HHHhhhccCCCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHh
Q psy15051 800 IITEAYSPSL---EKVAKYYGTGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIA 875 (1065)
Q Consensus 800 ligE~~~~~~---~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~ 875 (1065)
++||.|.... .....|.+......+++.|...+.+.+.. ......+.+.+......++.....++|++|||+.|+.
T Consensus 254 ~vgE~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~fl~nHD~~R~~ 333 (686)
T 1d3c_A 254 TFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFIDNHDMERFH 333 (686)
T ss_dssp EEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCSS
T ss_pred EEeccccCCcccchhhhhhhccCCCceeCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccccccceeeccCCCccccc
Confidence 9999997522 12233332211133555666666666543 3567778888776665566555666799999999998
Q ss_pred hhcC-HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCC
Q psy15051 876 TRYS-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954 (1065)
Q Consensus 876 s~~~-~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~ 954 (1065)
+..+ .++++++++++|++||+|+||||+|+|+.+. .||. +|.+|+|-+
T Consensus 334 ~~~~~~~~~~~a~a~llt~pG~P~IyyG~E~g~~~~-------~dp~----------------~R~~~~~~~-------- 382 (686)
T 1d3c_A 334 ASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGG-------TDPD----------------NRARIPSFS-------- 382 (686)
T ss_dssp CTTSCHHHHHHHHHHHHTSSSEEEEETTGGGTCCCC-------STTG----------------GGCCCCCCC--------
T ss_pred cccCCHHHHHHHHHHHHhCCCCcEEEecceecccCC-------CCcc----------------cccCCCCcC--------
Confidence 8322 3578999999999999999999999999874 2332 456665321
Q ss_pred CCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc-
Q psy15051 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT- 1033 (1065)
Q Consensus 955 ~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~- 1033 (1065)
...+++++||+|++|||++|+|+.|+++.+..++++++|.|..+++.++|++|++.+.
T Consensus 383 ---------------------~~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lVv~N~s~~~~ 441 (686)
T 1d3c_A 383 ---------------------TSTTAYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAP 441 (686)
T ss_dssp ---------------------SCSHHHHHHHHHTTHHHHCHHHHHCEEEEEEECSSEEEEEEECSSEEEEEEEECCTTCC
T ss_pred ---------------------CCcHHHHHHHHHHHHHhhChHhhCCcEEEEeeCCCEEEEEEEcCCcEEEEEEECCCCCc
Confidence 1245889999999999999999999999888788999999998889999999999654
Q ss_pred EEE
Q psy15051 1034 ETV 1036 (1065)
Q Consensus 1034 ~~v 1036 (1065)
+++
T Consensus 442 ~~~ 444 (686)
T 1d3c_A 442 ASI 444 (686)
T ss_dssp EEE
T ss_pred eEe
Confidence 444
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=470.62 Aligned_cols=349 Identities=22% Similarity=0.363 Sum_probs=251.3
Q ss_pred cccceEEEEecccccCcCCCC--CCCC-CCc-ccchhhhcccccccHHhhhH--HHHHcCcCEEEeCCCCcCC-------
Q psy15051 557 WKNTVIYQILVPSFKDSNNDG--IGDL-RGK-NVRKRYLELTLGLGIIEKID--YLKELGVETLWLTPFYSGP------- 623 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~--~Gdl-~g~-~~~~~~~~~t~~~Gl~~kLd--YLk~LGvnaI~L~PI~~~~------- 623 (1065)
|+++|||||+||||.++++++ .|.+ .|. ...+.|++|++ +||+++|| |||+||||+||||||+++.
T Consensus 9 ~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl-~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~ 87 (680)
T 1cyg_A 9 FTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDW-QGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDA 87 (680)
T ss_dssp CTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCH-HHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSS
T ss_pred CccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCH-HHHHhhcCHHHHHhCCCCEEEeCccccCcccccccc
Confidence 799999999999999987542 1211 110 12346778887 89999999 9999999999999999862
Q ss_pred ---CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCcccc
Q psy15051 624 ---NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYA 700 (1065)
Q Consensus 624 ---~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 700 (1065)
..+|||++.||++|||+|||++||++||++|
T Consensus 88 ~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~a---------------------------------------------- 121 (680)
T 1cyg_A 88 SGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAA---------------------------------------------- 121 (680)
T ss_dssp SCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHH----------------------------------------------
T ss_pred CCCCCCCCcCchhccccCcccCCHHHHHHHHHHH----------------------------------------------
Confidence 2469999999999999999999999999999
Q ss_pred CCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc---hhhHhhhc--------c--CCCCCcceeecCCCCCCCC
Q psy15051 701 GSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH---DWFIKSAQ--------K--IDPYTNYYVWKDGLNGKPG 767 (1065)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~---~wf~~~~~--------~--~~~~~d~y~~~~~~dG~p~ 767 (1065)
|++||+||+|+|+||++..| +||.+... + .....+||.....
T Consensus 122 -------------------H~~GIkVilD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------ 176 (680)
T 1cyg_A 122 -------------------HAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGG------ 176 (680)
T ss_dssp -------------------HHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCB------
T ss_pred -------------------HHCCCEEEEEeCCCCCCcccccCcchhhcCccccCcccccccCCCchhceecCCC------
Confidence 56666666666666666554 33322100 0 0011233321110
Q ss_pred CCCCCCc--------------cccCCCHHHHHHHHHHHHh-------------------------------cCCceEEEe
Q psy15051 768 TPPNNWK--------------HINITSREVMRSQKDVVQS-------------------------------FPLILMIIT 802 (1065)
Q Consensus 768 ~~~~~W~--------------~ln~~n~~v~~~l~~~lk~-------------------------------~~~~~~lig 802 (1065)
..|. .||+.||+|+++|.++++. .. +++++|
T Consensus 177 ---~~~~~~~~~~y~~~~~~pDLn~~np~Vr~~i~~~~~~Wl~~GVDGfRlDa~~~i~~~f~~~~~~~v~~~~-~~~~vg 252 (680)
T 1cyg_A 177 ---TTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWIDMGIDGIRMDAVKHMPFGWQKSLMDEIDNYR-PVFTFG 252 (680)
T ss_dssp ---CCCSSHHHHHSSBSTTEEEBCTTSHHHHHHHHHHHHHHHTTTCCEEEESCGGGSCSHHHHHHHHHHHHHC-CCEEEE
T ss_pred ---CCcCCCccccccCcCCCCccccCCHHHHHHHHHHHHHHHhCCCCEEEEeccccCCHHHHHHHHHHHhhcC-CcEEEc
Confidence 1121 1999999999999998332 12 589999
Q ss_pred ecCCCCh---HHHhhhccCCCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhc
Q psy15051 803 EAYSPSL---EKVAKYYGTGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRY 878 (1065)
Q Consensus 803 E~~~~~~---~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~ 878 (1065)
|.|.... .....|.+......+++.|...+.+.+.. ..+...+...+......++.....++|++|||++|+.+..
T Consensus 253 E~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~fl~NHD~~R~~s~~ 332 (680)
T 1cyg_A 253 EWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAYDEVLDQVTFIDNHDMDRFMIDG 332 (680)
T ss_dssp CCCCCTTCCCHHHHHHHHHSSCEEBCHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCSCCTT
T ss_pred cCCCCCcccchhhhhhhccCCCceECchHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccchhhceEEecCCCcchhcccC
Confidence 9987522 12223322211133555666666666644 3567788887776655565555667799999999998833
Q ss_pred C-HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCC
Q psy15051 879 S-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKS 957 (1065)
Q Consensus 879 ~-~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~ 957 (1065)
+ .+++++|++++|++||+|+||||||+|+.+. .||. +|.+|++ |+.
T Consensus 333 ~~~~~~~~a~a~llt~pG~P~IYyG~E~g~~~~-------~dp~----------------~R~~m~~-------~~~--- 379 (680)
T 1cyg_A 333 GDPRKVDMALAVLLTSRGVPNIYYGTEQYMTGN-------GDPN----------------NRKMMSS-------FNK--- 379 (680)
T ss_dssp CCTHHHHHHHHHHHHSSSEEEEETTGGGTCCCC-------STTG----------------GGCCCCC-------CCS---
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecccccCC-------CCcc----------------ccccCcC-------CCC---
Confidence 2 3578999999999999999999999999864 2333 4666652 111
Q ss_pred CCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc
Q psy15051 958 WLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT 1033 (1065)
Q Consensus 958 wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~ 1033 (1065)
..+++++||+|++|||++|+|+.|+++.+..+++++||.|..+++.++|++|++.+.
T Consensus 380 -------------------~~~~~~~~~~Li~lRk~~~al~~G~~~~~~~~~~v~af~R~~~~~~~lV~~N~s~~~ 436 (680)
T 1cyg_A 380 -------------------NTRAYQVIQKLSSLRRNNPALAYGDTEQRWINGDVYVYERQFGKDVVLVAVNRSSSS 436 (680)
T ss_dssp -------------------CSHHHHHHHHHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCSSC
T ss_pred -------------------CcHHHHHHHHHHHHHhhCHHHccCceEEEEeCCCEEEEEEEcCCcEEEEEEECCCCC
Confidence 235889999999999999999999999888788999999998889999999999654
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-47 Score=471.20 Aligned_cols=376 Identities=16% Similarity=0.192 Sum_probs=264.2
Q ss_pred hhhcccceEEEEecccccCcCCCCC---CCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC------
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGI---GDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN------ 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~---Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~------ 624 (1065)
+.||+++|||||||++|+++++++. |+|.|-...+. +++ +||+++|||||+||||+||||||+++++
T Consensus 209 ~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~---~~l-~Gi~~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~ 284 (718)
T 2e8y_A 209 FSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDT---QTA-NGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKP 284 (718)
T ss_dssp CSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTC---BCT-TSCBCHHHHHHHHTCSEEEESCCEEESSSCTTSG
T ss_pred CCChhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccc---ccc-ccchhhhHHHHHcCCCEEEECCccccCccccccc
Confidence 3458999999999999998776665 66663221111 122 5788899999999999999999998765
Q ss_pred ---CCCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 625 ---GDIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 625 ---~~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
.+|||++.||++|+++||+ ++|||+||++|
T Consensus 285 ~~~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~a--------------------------------------- 325 (718)
T 2e8y_A 285 LDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTL--------------------------------------- 325 (718)
T ss_dssp GGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHH---------------------------------------
T ss_pred cccCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHH---------------------------------------
Confidence 2499999999999999996 79999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc-hhhHhhhccCCCCCcceeecCCCCCCCCCCCCC
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH-DWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNN 772 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~-~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~ 772 (1065)
|++||+||||+|+||++..| +||.... ++||++. ..+|.+ .....
T Consensus 326 --------------------------H~~GI~VIlDvV~NHt~~~~~~~f~~~~------p~y~~~~-~~~g~~-~n~~~ 371 (718)
T 2e8y_A 326 --------------------------HQHGLRVILDVVFNHVYKRENSPFEKTV------PGYFFRH-DECGKP-SNGTG 371 (718)
T ss_dssp --------------------------HHTTCEEEEEECTTCCSSGGGSHHHHHS------TTTSBCB-CTTSSB-CCTTS
T ss_pred --------------------------HHCCCEEEEEEecccccCcccccccccC------CCeEEec-CCCCcc-cCCCC
Confidence 89999999999999999998 6998753 2455433 223431 12233
Q ss_pred Ccc-ccCCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCCChH--HHhhhcc
Q psy15051 773 WKH-INITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSPSLE--KVAKYYG 817 (1065)
Q Consensus 773 W~~-ln~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~~~~--~~~~y~~ 817 (1065)
|+. ||+.||+||++|.++++ +..|+++++||.|..... ....+..
T Consensus 372 ~g~dln~~np~Vr~~i~d~~~~Wl~e~gVDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~ 451 (718)
T 2e8y_A 372 VGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWDLATPLPHEQKAAL 451 (718)
T ss_dssp SSCCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHSTTCEEEECCCCCCCSSCGGGBCCG
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeccccCCHHHHHHHHHHHHHhCCCeEEEEeecCCCCcccccccccc
Confidence 433 99999999999999822 235589999999975221 1111111
Q ss_pred CCCCccc--cccccHHHHHHhhcCC-----------C---hHHHHHHHHHHhhc------CCCCCcccccccCCChhhHh
Q psy15051 818 TGDTQGT--HLSVNYEIMNKFGATS-----------N---AKDLENVVNAYLKS------LPSGKWSSWMVGGHSITRIA 875 (1065)
Q Consensus 818 ~~~~~~~--d~~~~~~~~~~~~~~~-----------~---~~~l~~~l~~~~~~------~~~~~~~~~flenHD~~Rl~ 875 (1065)
. ...++ ...|++.+++.+.+.. . ...+...+...... ........+|++|||+.|+.
T Consensus 452 ~-~~~~~~~~~~~n~~~~~~~~~~~f~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vnfv~nHD~~rl~ 530 (718)
T 2e8y_A 452 A-NAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIAGSSGWKALAPIVPEPSQSINYVESHDNHTFW 530 (718)
T ss_dssp G-GGGGCTTCEEECHHHHHHHHCCSSSTTCCCGGGTCGGGHHHHHHHHBTTSCBTTBCCSSSSGGGEEECSCCSSSSCHH
T ss_pred c-cccCCCceEEEChHHHHHhhcccccccccceecCChhhHHHHHHHHhcCccccccccccCCcccEEEEEecCCCchHH
Confidence 0 01123 3457777777664310 1 12222222111100 11112345699999999998
Q ss_pred hhcC-----------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCC
Q psy15051 876 TRYS-----------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQW 944 (1065)
Q Consensus 876 s~~~-----------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W 944 (1065)
++++ .+++|++++++|++||+||||||||+|+++.... +.+. .+..+.+|+|
T Consensus 531 ~~~~~~~~~~~~~~~~~~~kla~a~ll~~~G~P~iy~GdE~g~~~~g~~-~~y~----------------~~d~~~~~~W 593 (718)
T 2e8y_A 531 DKMSFALPQENDSRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGVE-NSYQ----------------SSDSINQLDW 593 (718)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTTCS-CCTT----------------CCHHHHSCCH
T ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHCCCCcEEeechhhCccCCCCC-cccC----------------CCccccccCc
Confidence 7753 2468899999999999999999999999875210 1111 1124456777
Q ss_pred CcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe-------EEEccCCcEEEEEEE
Q psy15051 945 NDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-------KISTPNNYVFILTRT 1017 (1065)
Q Consensus 945 ~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~~~~viaf~R~ 1017 (1065)
+... ...+++++||+|++|||++|+|+.|++ .++..++++++|.|.
T Consensus 594 ~~~~---------------------------~~~~l~~~~~~Li~lRk~~pal~~g~~~~i~~~~~~~~~~~~v~a~~r~ 646 (718)
T 2e8y_A 594 DRRE---------------------------TFKEDVHYIRRLISLRKAHPAFRLRSAADIQRHLECLTLKEHLIAYRLY 646 (718)
T ss_dssp HHHH---------------------------HTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEEEEECSSEEEEEEC
T ss_pred cccc---------------------------ccCHHHHHHHHHHHHHhhChhhccCchhhhccceEEecCCCCEEEEEEe
Confidence 6421 235799999999999999999999975 344456789999998
Q ss_pred c-----CCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccC
Q psy15051 1018 E-----GSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSV 1055 (1065)
Q Consensus 1018 ~-----~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~ 1055 (1065)
. +++.++|++|++.+++++.|+. .+.+++++++.
T Consensus 647 ~~~~~~~~~~~lVv~N~~~~~~~~~lp~----~g~~~~l~~~~ 685 (718)
T 2e8y_A 647 DLDEVDEWKDIIVIHHASPDSVEWRLPN----DIPYRLLCDPS 685 (718)
T ss_dssp CCTTTCSSSEEEEEEECSSSEEEEECSS----CSCEEEEEETT
T ss_pred cCCCCCCCCeEEEEEeCCCCCEEEECCC----CCcEEEEecCC
Confidence 5 4679999999999999998874 25677777654
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=467.99 Aligned_cols=368 Identities=20% Similarity=0.324 Sum_probs=279.3
Q ss_pred ccCChhhcccc--eEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC--CC
Q psy15051 550 RCNQKEWWKNT--VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP--NG 625 (1065)
Q Consensus 550 ~~~~~~ww~~~--vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~--~~ 625 (1065)
+...+.||+++ ||||+++++|. |||+ ||+++|+|||+||||+|||+||++++ ..
T Consensus 84 ~~~~~~W~~~~~~viY~~~~~~f~-------G~~~---------------gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~ 141 (655)
T 3ucq_A 84 RLLRPDWLQRPEMVGYVAYTDRFA-------GTLK---------------GVEERLDYLEGLGVKYLHLMPLLRPREGEN 141 (655)
T ss_dssp HHHCTTGGGSTTCCEEEECHHHHH-------SSHH---------------HHHTTHHHHHHTTCCEEEECCCEEECSSCC
T ss_pred cccCCCcccCCceEEEEEehhhhC-------CCHH---------------HHHHhhHHHHHcCCCEEEECCCcCCCCCCC
Confidence 44568999998 99999999995 8999 99999999999999999999999986 45
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||+|.||++|||+|||++||++||++|
T Consensus 142 ~~GY~~~dy~~i~~~~Gt~~d~~~lv~~~--------------------------------------------------- 170 (655)
T 3ucq_A 142 DGGYAVQDYRAVRPDLGTMDDLSALARAL--------------------------------------------------- 170 (655)
T ss_dssp GGGTSEEEEEEECGGGCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCcCCcCcCccCccCCCHHHHHHHHHHH---------------------------------------------------
Confidence 79999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCC-------C----CCCCCCCCC-
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLN-------G----KPGTPPNNW- 773 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~d-------G----~p~~~~~~W- 773 (1065)
|++||+||+|+|+||+|.+|+||+++..+.++|.+||++.+... . +|...+.+|
T Consensus 171 --------------h~~Gi~Vi~D~V~NH~s~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 236 (655)
T 3ucq_A 171 --------------RGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGNFS 236 (655)
T ss_dssp --------------HHTTCEEEEEECCSEEETTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCSCTTTSCSSEE
T ss_pred --------------HHCCCEEEEEeeccccccchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccccccCCCCccc
Confidence 99999999999999999999999999888888999997653210 0 011111111
Q ss_pred --------------c-------cccCCCHHHHHHHHHHHHh---------------------------------------
Q psy15051 774 --------------K-------HINITSREVMRSQKDVVQS--------------------------------------- 793 (1065)
Q Consensus 774 --------------~-------~ln~~n~~v~~~l~~~lk~--------------------------------------- 793 (1065)
. .||+.||+|+++|.++++.
T Consensus 237 ~~~~~~~~~~~~~~~~f~~~qpDLn~~np~V~~~i~~~l~~w~~~GvDGfRlDa~~~l~k~~g~~~~~~~~~~~~l~~~r 316 (655)
T 3ucq_A 237 WDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIILYLANRGVEVFRLDAIAFIWKRLGTDCQNQPEVHHLTRALR 316 (655)
T ss_dssp EETTSSSSSCEEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHH
T ss_pred ccccccccCCceEeccccCCCCccCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhccccCCCccCCcHHHHHHHHHHH
Confidence 0 1899999999999998221
Q ss_pred -----cCCceEEEeecCCCChHHHhhhccCCCC--ccccccccHHHHHHhhcC---CChHHHHHHHHHHhhcCCCCCccc
Q psy15051 794 -----FPLILMIITEAYSPSLEKVAKYYGTGDT--QGTHLSVNYEIMNKFGAT---SNAKDLENVVNAYLKSLPSGKWSS 863 (1065)
Q Consensus 794 -----~~~~~~ligE~~~~~~~~~~~y~~~~~~--~~~d~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~ 863 (1065)
..|+++++||.|.. +.....|++.+.. .+++++|++.+...+... .+...+...+..... .+......
T Consensus 317 ~~~~~~~p~~~~vgE~~~~-~~~~~~y~~~~~~~~~~~~~~fdf~l~~~~~~a~~~~~~~~L~~~l~~~~~-~~~~~~~v 394 (655)
T 3ucq_A 317 AAARIVAPAVAFKAEAIVA-PADLIHYLGTRAHHGKVSDMAYHNSLMVQLWSSLASRNTRLFEEALRAFPP-KPTSTTWG 394 (655)
T ss_dssp HHHHHHCTTCEEEECCCCC-HHHHGGGTCCSSSSCCSCSEEECHHHHHHHHHHHHHCCCHHHHHHHHTCCC-CCTTCEEE
T ss_pred HHHHHhCCCeEEEEecCCC-HHHHHHHhCCCCccccccCeEECccchHHHHHHHhcCCHHHHHHHHHhCcC-CCCCCeEE
Confidence 34589999999976 7778888876542 347888998887765322 233444444443322 22223234
Q ss_pred ccccCCChhhH--------------------h----------------------------------hhcC----------
Q psy15051 864 WMVGGHSITRI--------------------A----------------------------------TRYS---------- 879 (1065)
Q Consensus 864 ~flenHD~~Rl--------------------~----------------------------------s~~~---------- 879 (1065)
+|++|||+..+ . +..|
T Consensus 395 ~Fv~nHD~i~l~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~~~~i~~~~~s~~g~~~al~~~d~ 474 (655)
T 3ucq_A 395 LYVRCHDDIGWAISDEDAARAGLNGAAHRHFLSDFYSGQFPGSFARGLVFQYNPVNGDRRISGSAASLAGLEAALETGDP 474 (655)
T ss_dssp ECSCCSSCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEESCCTTTCCCEEECCHHHHTTHHHHHHHCCH
T ss_pred EEeeeCCCCCccCChHHHHhhcccchHHHHHHHHHhcccCCcccccCcccccccccccccccccccchhhHHHHhccCCc
Confidence 69999998211 0 0000
Q ss_pred ------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCC
Q psy15051 880 ------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFS 953 (1065)
Q Consensus 880 ------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs 953 (1065)
.++.+++.+++|++||+|+||||+|+|+.+.. +...|+. .....|..+|.+|+|+..
T Consensus 475 ~~~~~~~~r~~la~aill~~pGiP~iy~GdE~G~~nd~---~~~~d~~--------~~~~~R~~~R~~~~w~~v------ 537 (655)
T 3ucq_A 475 GRIEDAVRRLLLLHTVILGFGGVPLLYMGDELALLNDY---AFEDVPE--------HAPDNRWVHRPQMDWALA------ 537 (655)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCG---GGGGSTT--------TTTCGGGGGCCCCCHHHH------
T ss_pred hhhhhHHHHHHHHHHHHHhCCCeeEEEchHhhcCCCch---hhhcccc--------ccCcccccccCCCChHHH------
Confidence 13677889999999999999999999998742 1111111 012346678999998752
Q ss_pred CCCCCCCCCCCcccccHHHhhcCCCcH----HHHHHHHHHHHHhcccccCC-CeEEEcc-CCcEEEEEEEcCCcEEEEEE
Q psy15051 954 KAKSWLPVHPNYWTLNAQAEKKTKPSH----YSVYKDLTTLRATSGAVRMG-DYKISTP-NNYVFILTRTEGSTSVYLII 1027 (1065)
Q Consensus 954 ~~~~wl~~~~~~~~~~~~~~~~~~~~l----~~~~r~Li~LRk~~paL~~G-~~~~l~~-~~~viaf~R~~~~~~vlVv~ 1027 (1065)
+.+..++.++ ++++|+|+++|+++|+|+.| +++.+.. ++.|++|.|..+++.+|||+
T Consensus 538 -----------------~~~~~d~~s~~~~v~~~~~~Li~lRk~~paf~~~~~~~~l~~~~~~vlaf~R~~~~~~llvv~ 600 (655)
T 3ucq_A 538 -----------------ERVRQEPSSPAGRVNTGLRHLLRVRRDTPQLHASIESQVLPSPDSRALLLRRDHPLGGMVQVY 600 (655)
T ss_dssp -----------------HHHHHCTTSHHHHHHHHHHHHHHHHHTCGGGCTTSCCEECCCSSTTEEEEEECCTTCCEEEEE
T ss_pred -----------------HHHhcCCCChHHHHHHHHHHHHHHHHhCccccCCCceEEEeCCCCcEEEEEEECCCCeEEEEE
Confidence 2333444554 99999999999999999988 5887765 46899999998888999999
Q ss_pred ECCCCcEEEEcCC
Q psy15051 1028 NLNSRTETVDLSD 1040 (1065)
Q Consensus 1028 N~s~~~~~v~l~~ 1040 (1065)
|+++++++++++.
T Consensus 601 N~s~~~~~v~l~~ 613 (655)
T 3ucq_A 601 NFSEETVMLPSHV 613 (655)
T ss_dssp ECSSSCCEEETHH
T ss_pred eCCCCcEEEEccc
Confidence 9999999999863
|
| >1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=460.61 Aligned_cols=314 Identities=21% Similarity=0.325 Sum_probs=229.2
Q ss_pred hhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
++||+++||||||||||++++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~ldyl~-~LGv~---------------~I~l~-Pi~~~~~~~~GY-- 63 (558)
T 1uok_A 3 KQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLK-ELGID---------------VIWLS-PVYESPNDDNGY-- 63 (558)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTS--
T ss_pred chhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHHHHHHH-HcCCC---------------EEEEC-CcccCCCCCCCC--
Confidence 689999999999999999999999999999999999999 99999 66666 888888888999
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 ------d~~dy-------~~id~~~Gt~~df~~lv~~~h~~Gi~Vi--------lD~-------V~NH~s---------- 105 (558)
T 1uok_A 64 ------DISDY-------CKIMNEFGTMEDWDELLHEMHERNMKLM--------MDL-------VVNHTS---------- 105 (558)
T ss_dssp ------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC----------
T ss_pred ------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc----------
Confidence 66666 667779999999999997 799999999 887 888876
Q ss_pred CccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc-
Q psy15051 184 GQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ- 261 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 261 (1065)
.+|+||++... .+..|+.++| |.+......+++|...+.
T Consensus 106 ~~~~wf~~~~~---------------------------------------~~~~~y~d~y~~~~~~~g~~p~~~~~~f~~ 146 (558)
T 1uok_A 106 DEHNWFIESRK---------------------------------------SKDNKYRDYYIWRPGKEGKEPNNWGAAFSG 146 (558)
T ss_dssp TTSHHHHHHTT---------------------------------------CTTCTTGGGBCEECCSSSSCSSCBBCTTSS
T ss_pred ccchHHHHHhc---------------------------------------CCCCCcccceEeccCcCCCCCccccccCCC
Confidence 67788865311 0011222222 211100011111111110
Q ss_pred -ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 262 -RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 262 -~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
.+-..+....+++|.|. ..|||||++||+|| ++
T Consensus 147 ~~w~~~~~~~~~y~~~f~-------------------~~~pdLn~~np~Vr---------------------------~~ 180 (558)
T 1uok_A 147 SAWQYDEMTDEYYLHLFS-------------------KKQPDLNWDNEKVR---------------------------QD 180 (558)
T ss_dssp BSEEEETTTTEEEECSSC-------------------TTSCBBCTTSHHHH---------------------------HH
T ss_pred ccccccCCcCcEEeeccc-------------------cccccccCCCHHHH---------------------------HH
Confidence 00001112344599998 79999999999997 88
Q ss_pred HHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHH-HHHhhCCcc
Q psy15051 341 LLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRT-LVEKFGNQS 419 (1065)
Q Consensus 341 ~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~-~~d~~~~~~ 419 (1065)
|+++++||+++||||||+|||++|.++.+++|+|.. + +.....+.|+.++|++|+++++||+ +.+++ +..
T Consensus 181 i~~~~~~W~~~gvDGfRlDa~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 251 (558)
T 1uok_A 181 VYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETE----E----EGYVSGHKHFMNGPNIHKYLHEMNEEVLSHY-DIM 251 (558)
T ss_dssp HHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCC----C----SSCBCCGGGTTTCTTHHHHHHHHHHHTGGGS-CCE
T ss_pred HHHHHHHHHHcCCCEEEEccccccccccccCCCCCc----c----cccccccccccCChHHHHHHHHHHHHhhccC-CeE
Confidence 999999999999999999999999998888888752 0 1111122467899999999999998 44544 889
Q ss_pred CCCCCCccccc-eeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHHHhcC
Q psy15051 420 ADRQPSCADKF-AIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFIYCGI 479 (1065)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~Wq~~m 479 (1065)
+|||......+ ...+. +..+.+++|+|+|.+... . .+..|+..+
T Consensus 252 ~vgE~~~~~~~~~~~y~----------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 315 (558)
T 1uok_A 252 TVGEMPGVTTEEAKLYT----------------GEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKAL 315 (558)
T ss_dssp EEEECTTCCHHHHHHHH----------------CGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEeccCCCHHHHHHHh----------------ccCCCccceEEehhhhhcccccccccccCCCCHHHHHHHHHHHHHhc
Confidence 99998733222 11111 222346778888876521 1 678899888
Q ss_pred cCCcccchhhcccCccccchhhhhhh
Q psy15051 480 VDDTSALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 480 ~~~~~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
...++..+++.|||++|.++|++.+.
T Consensus 316 ~~~~~~~~fl~NHD~~R~~~~~g~~~ 341 (558)
T 1uok_A 316 EHTGWNSLYWNNHDQPRVVSRFGNDG 341 (558)
T ss_dssp SSSSCCEECSCCTTSCCHHHHTSCSS
T ss_pred ccCCccceeecCCCccchhhhcCCch
Confidence 76677777889999999999998754
|
| >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=463.12 Aligned_cols=315 Identities=22% Similarity=0.312 Sum_probs=227.8
Q ss_pred CchhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCc
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSR 102 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy 102 (1065)
+.++||+++|||||||+||++++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 2 p~~~w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~-~LGv~---------------~I~L~-Pi~~~~~~~~GY 64 (557)
T 1zja_A 2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLK-GLGID---------------AIWIN-PHYASPNTDNGY 64 (557)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTS
T ss_pred CcchhhhcCcEEEEEchHhcCCCCCCccCHHHHHHHHHHHH-HcCCC---------------EEEEC-CCccCCCCCCCC
Confidence 45789999999999999999999999999999999999999 99999 66666 888888888999
Q ss_pred cceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccc
Q psy15051 103 RWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQ 181 (1065)
Q Consensus 103 ~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~ 181 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 65 --------d~~dy-------~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~-------V~NHts-------- 106 (557)
T 1zja_A 65 --------DISDY-------REVMKEYGTMEDFDRLMAELKKRGMRLM--------VDV-------VINHSS-------- 106 (557)
T ss_dssp --------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC--------
T ss_pred --------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc--------
Confidence 66666 667779999999999997 799999999 887 888876
Q ss_pred ccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhc
Q psy15051 182 CQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQAL 260 (1065)
Q Consensus 182 ~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 260 (1065)
.+|+||++... .++.|+.++| |.+......+++|...+
T Consensus 107 --~~~~wf~~~~~---------------------------------------~~~~~y~d~y~~~~~~~g~~p~~~~~~f 145 (557)
T 1zja_A 107 --DQHEWFKSSRA---------------------------------------SKDNPYRDYYFWRDGKDGHEPNNYPSFF 145 (557)
T ss_dssp --TTSHHHHHHTT---------------------------------------CTTCTTGGGBCEECCBTTBCSSCCBCTT
T ss_pred --cchhHHHHhhc---------------------------------------CCCCCCccceEecCCcCCCCCccccccC
Confidence 66778765310 0111222222 21111011112221111
Q ss_pred c--ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHH
Q psy15051 261 Q--RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEI 338 (1065)
Q Consensus 261 ~--~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1065)
+ .+...+...++++|.|. ..|||||++||+||
T Consensus 146 ~~~~w~~~~~~~~~y~~~f~-------------------~~~pdLN~~np~Vr--------------------------- 179 (557)
T 1zja_A 146 GGSAWEKDPVTGQYYLHYFG-------------------RQQPDLNWDTPKLR--------------------------- 179 (557)
T ss_dssp SSBSEEEETTTTEEEECSSC-------------------TTSCBBCTTCHHHH---------------------------
T ss_pred CCccccccCCcCcEEEeccc-------------------ccCCccCCCCHHHH---------------------------
Confidence 0 00001112334499998 79999999999997
Q ss_pred HHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCc
Q psy15051 339 TLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQ 418 (1065)
Q Consensus 339 ~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~ 418 (1065)
++|+++++||+++||||||||||++|.++.+++|+|..++ + +.+.++.++|++|+|+++||+.+...++.
T Consensus 180 ~~l~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~l~~~~~~v~~~~~~ 249 (557)
T 1zja_A 180 EELYAMLRFWLDKGVSGMRFDTVATYSKTPGFPDLTPEQM-------K---NFAEAYTQGPNLHRYLQEMHEKVFDHYDA 249 (557)
T ss_dssp HHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHH-------H---THHHHTTCCTTHHHHHHHHHHHTGGGSCC
T ss_pred HHHHHHHHHHHHcCCCEEeecchhhcccccccCcCCCccc-------c---cccccccCChHHHHHHHHHHHHHhccCCe
Confidence 8899999999999999999999999999877877764210 0 11235789999999999999855434588
Q ss_pred cCCCCCCcccc-ceeeecccCccccCCCCcccccCCCcccccccccchhhhH-----------------H-HHHHHHhcC
Q psy15051 419 SADRQPSCADK-FAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ-----------------V-VSHFIYCGI 479 (1065)
Q Consensus 419 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~-----------------~-~~~~Wq~~m 479 (1065)
.+|||...... ....+. +.++.+++|+|+|.+..+ . .+..|+..+
T Consensus 250 ~~igE~~~~~~~~~~~y~----------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 313 (557)
T 1zja_A 250 VTAGEIFGAPLNQVPLFI----------------DSRRKELDMAFTFDLIRYDRALDRWHTIPRTLADFRQTIDKVDAIA 313 (557)
T ss_dssp EEEEECCSCCGGGHHHHH----------------CGGGCSCSEEECCTTTTTTBCTTSSCBCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCHHHHHHHh----------------ccCCCcccEEEehhhhhhcccccccccCCCCHHHHHHHHHHHHHhc
Confidence 99999863222 211111 122345667777765411 1 678899888
Q ss_pred cCCcccchhhcccCccccchhhhhhh
Q psy15051 480 VDDTSALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 480 ~~~~~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
...++..++..|||++|.++|++.+.
T Consensus 314 ~~~~~~~~fl~nHD~~R~~~~~~~~~ 339 (557)
T 1zja_A 314 GEYGWNTFFLGNHDNPRAVSHFGDDR 339 (557)
T ss_dssp TTTCCBEECSCCTTSCCHHHHHSCCS
T ss_pred ccCCccceeccCCCCcchhhhhCCCc
Confidence 76667777889999999999998764
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=450.25 Aligned_cols=346 Identities=18% Similarity=0.322 Sum_probs=261.9
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---------
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--------- 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--------- 624 (1065)
..++..++|||+||++|++.+++ .|||+ ||+++|||||+||||+|||+||+++++
T Consensus 226 r~~~~~~~iYEi~~rsf~~~~~~-~Gd~~---------------gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~ 289 (695)
T 3zss_A 226 RERALYGAWYEFFPRSEGTPHTP-HGTFR---------------TAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNT 289 (695)
T ss_dssp CHHHHCEEEEECCGGGSCCSSCC-SCCHH---------------HHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGC
T ss_pred ccccccceEEEEehhHhcCCCCC-CCCHH---------------HHHHHHHHHHhCCCCEEEECCcccCCcccccccccc
Confidence 45788899999999999987766 79999 999999999999999999999999864
Q ss_pred -----CCCC--CcCCC----CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 625 -----GDIG--YDISN----HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 625 -----~~~G--Y~~~d----y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
.++| |++.| |++|||+|||++|||+||++|
T Consensus 290 ~~~~~~d~GspY~i~d~~~~y~~idp~~Gt~edfk~LV~~a--------------------------------------- 330 (695)
T 3zss_A 290 LSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEA--------------------------------------- 330 (695)
T ss_dssp SSCCTTCCCCTTSBCBTTBCTTSCCTTTCCHHHHHHHHHHH---------------------------------------
T ss_pred ccccccCCCCcccccCCCCCccccCcccCCHHHHHHHHHHH---------------------------------------
Confidence 2466 98888 999999999999999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCC---CCC
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPG---TPP 770 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~---~~~ 770 (1065)
|++||+||+|+|+|| +.+|+||++ +++||.+... |... .++
T Consensus 331 --------------------------H~~GI~VilD~V~Nh-s~~~~~~~~-------~~dwf~~~~d--g~~~~~~~~~ 374 (695)
T 3zss_A 331 --------------------------GKLGLEIALDFALQC-SPDHPWVHK-------HPEWFHHRPD--GTIAHAENPP 374 (695)
T ss_dssp --------------------------HHTTCEEEEEECCEE-CTTSTHHHH-------CGGGSCCCTT--SCCCCEEETT
T ss_pred --------------------------HHCCCEEEEEeeccC-Cccchhhhc-------ccceeeecCC--CCcccCCCCC
Confidence 888889999999998 778999987 6789987643 2210 123
Q ss_pred CCCcc---ccCCC--HHHHHHHHHHHH-------------------------------hcCCceEEEeecCCCChHHHhh
Q psy15051 771 NNWKH---INITS--REVMRSQKDVVQ-------------------------------SFPLILMIITEAYSPSLEKVAK 814 (1065)
Q Consensus 771 ~~W~~---ln~~n--~~v~~~l~~~lk-------------------------------~~~~~~~ligE~~~~~~~~~~~ 814 (1065)
.+|.+ ||+.| |+|+++|.++++ +..|+++++||.|.. +.....
T Consensus 375 ~~~~~~~dLn~~n~~p~V~~~l~~~l~~Wi~~GVDGfRlD~a~~~~~~f~~~~~~~v~~~~pd~~~vgE~~~~-p~~~~~ 453 (695)
T 3zss_A 375 KKYQDIYPIAFDADPDGLATETVRILRHWMDHGVRIFRVDNPHTKPVAFWERVIADINGTDPDVIFLAEAFTR-PAMMAT 453 (695)
T ss_dssp EEETTCEECCCSSCHHHHHHHHHHHHHHHHHTTCCEEEESSGGGSCHHHHHHHHHHHHHHCTTCEEEECCCSC-HHHHHH
T ss_pred ccccccccccccCCcHHHHHHHHHHHHHHHHhCCCEEEecCcchhhHHHHHHHHHHHHhhCCCceEEEeecCC-hHHhhh
Confidence 34554 99999 999999999832 235689999999964 654444
Q ss_pred hccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC-HHHHHHHHHHHHhC
Q psy15051 815 YYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLL 893 (1065)
Q Consensus 815 y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~-~~~~kla~~ll~tl 893 (1065)
+.+ .+++..|++.... .....+.+.+..............+|++|||+.|+.+..+ .++.++++++++|+
T Consensus 454 l~~----~gfd~~~~y~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~FvdNHD~~R~~s~~g~~~~~kla~all~tl 524 (695)
T 3zss_A 454 LAQ----IGFQQSYTYFTWR-----NTKQELTEYLTELSGEAASYMRPNFFANTPDILHAYLQHGGRPAFEVRAVLAATL 524 (695)
T ss_dssp HHH----TTCSEEECSGGGC-----CSHHHHHHHHHHHTTGGGGTCCEEEESCBTTBCCHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhc----cCcCceechhhhh-----cchhHHHHHHHhhhhhhhhcccceecccCCCccchhcccchHHHHHHHHHHHHhc
Confidence 443 2466666653321 1223344444433322223344567999999999988765 45778889999999
Q ss_pred CCeEEEEcccccCccCCC-CccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHH
Q psy15051 894 PGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQA 972 (1065)
Q Consensus 894 pGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~ 972 (1065)
||+|+||||+|+|+.+.. ...+++.|+ ...+|.+|+|+...
T Consensus 525 ~GiP~IYyGdE~G~~g~~dp~~~ey~d~--------------e~~~r~p~~W~~~~------------------------ 566 (695)
T 3zss_A 525 SPTWGIYSGYELCENTPLREGSEEYLDS--------------EKYQLKPRDWTRAA------------------------ 566 (695)
T ss_dssp CSEEEEETTGGGTCCCBSSTTCCSBTTC--------------TTSSCCCCCHHHHH------------------------
T ss_pred CCCcEEEcCeeccccCCCCCCccccccc--------------cccccCCCCccccc------------------------
Confidence 999999999999999862 111111111 11257788887521
Q ss_pred hhcCCCcHHHHHHHHHHHHHhcccccCC-CeEEEcc-CCcEEEEEEEcCCcEEEEEEECCC---CcEEEEcCC
Q psy15051 973 EKKTKPSHYSVYKDLTTLRATSGAVRMG-DYKISTP-NNYVFILTRTEGSTSVYLIINLNS---RTETVDLSD 1040 (1065)
Q Consensus 973 ~~~~~~~l~~~~r~Li~LRk~~paL~~G-~~~~l~~-~~~viaf~R~~~~~~vlVv~N~s~---~~~~v~l~~ 1040 (1065)
..+.+++++||+|++||+++|+|+.| .++++.. ++++++|.|..+++.++||+|+++ +++++.|+.
T Consensus 567 --~~~~~l~~~ik~Li~LRk~~paL~~g~~~~~~~~~~~~vlaf~R~~~~~~vlVviN~s~~~~~~~tv~Lp~ 637 (695)
T 3zss_A 567 --REGTTIAPLVTRLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATVSLDM 637 (695)
T ss_dssp --HHTCSCHHHHHHHHHHHHHCGGGGCSSCCEECCBSCTTEEEEEEEETTEEEEEEEECCSSSCEEEEEECCH
T ss_pred --cccchHHHHHHHHHHHHHhCHHhcCCCcEEEEEcCCCcEEEEEEEcCCCEEEEEEECCCCCCceEEEEeCc
Confidence 22467999999999999999999885 6777654 568999999988999999999994 556777763
|
| >3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-47 Score=461.67 Aligned_cols=320 Identities=18% Similarity=0.257 Sum_probs=232.9
Q ss_pred cCchhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccC
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWS 101 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~g 101 (1065)
.+.+.||+++||||||||||++++++|+|||+||++|||||| +|||| ++|++ |++.++..+||
T Consensus 9 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~Ldyl~-~LGv~---------------~i~l~-Pi~~~~~~~~G 71 (589)
T 3aj7_A 9 ETEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIK-ELGAD---------------AIWIS-PFYDSPQDDMG 71 (589)
T ss_dssp GGSCCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHTHHHHH-HHTCS---------------EEEEC-CCEECCCTTTT
T ss_pred CCCccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHHHHHHH-HcCCC---------------EEEEC-CcccCCCCCCC
Confidence 445799999999999999999999999999999999999999 99999 66666 88888878899
Q ss_pred ccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcc
Q psy15051 102 RRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKH 180 (1065)
Q Consensus 102 y~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~ 180 (1065)
| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 72 Y--------~~~dy-------~~id~~~Gt~~df~~lv~~~h~~Gi~Vi--------lD~-------V~NH~~------- 114 (589)
T 3aj7_A 72 Y--------DIANY-------EKVWPTYGTNEDCFALIEKTHKLGMKFI--------TDL-------VINHCS------- 114 (589)
T ss_dssp S--------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC-------
T ss_pred c--------Ccccc-------cccccccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccc-------
Confidence 9 66666 667779999999999997 799999999 887 888876
Q ss_pred cccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-cccccc------ccCC
Q psy15051 181 QCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILE------RTVS 253 (1065)
Q Consensus 181 ~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~ 253 (1065)
.+|+||++.... +..|+.++| |.+... ...+
T Consensus 115 ---~~~~wf~~~~~~---------------------------------------~~~~y~d~y~~~~~~~~~~~g~~~~p 152 (589)
T 3aj7_A 115 ---SEHEWFKESRSS---------------------------------------KTNPKRDWFFWRPPKGYDAEGKPIPP 152 (589)
T ss_dssp ---TTSHHHHHHTTC---------------------------------------SSSTTGGGBCEECCSEECTTSCEECS
T ss_pred ---cchhHHHHHhcC---------------------------------------CCCCCCCceeecCCcccccccCCCCC
Confidence 677888653110 011122222 211100 0011
Q ss_pred cchhhhcc--ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccc
Q psy15051 254 SNSLQALQ--RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDC 331 (1065)
Q Consensus 254 ~~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~ 331 (1065)
++|...+. .+-..+...++++|.|. ..|||||++||+||
T Consensus 153 ~~~~~~f~g~~w~~~~~~~~~y~~~f~-------------------~~~pdLN~~np~Vr-------------------- 193 (589)
T 3aj7_A 153 NNWKSYFGGSAWTFDEKTQEFYLRLFC-------------------STQPDLNWENEDCR-------------------- 193 (589)
T ss_dssp SCBBCTTSSBSEEEETTTTEEEECSSS-------------------TTCCBBCTTCHHHH--------------------
T ss_pred CcccccCCCccceecCCCCeEEECccC-------------------CCCCccCCCCHHHH--------------------
Confidence 22211110 00001112344499999 79999999999997
Q ss_pred hhhhHHHHHHHH-HHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHH
Q psy15051 332 QMFCYEITLLLC-ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRT 410 (1065)
Q Consensus 332 ~~~~~~~~~~~~-~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~ 410 (1065)
++|++ +++||+++||||||+|||++|.|+.+++|+|.... .......|.++.++|++|+++++||+
T Consensus 194 -------~~l~~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~d~~~~~~------~~~~~~~~~~~~n~~~~~~~l~~~~~ 260 (589)
T 3aj7_A 194 -------KAIYESAVGYWLDHGVDGFRIDVGSLYSKVVGLPDAPVVDK------NSTWQSSDPYTLNGPRIHEFHQEMNQ 260 (589)
T ss_dssp -------HHHHHHHTHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCT------TCSSBCCHHHHSSCTTHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhcCCCEEEEccccccccccCCCcCCcccc------ccccccccccccccHHHHHHHHHHHH
Confidence 88999 99999999999999999999999988998875321 01111236678999999999999998
Q ss_pred ----HHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH-----------------
Q psy15051 411 ----LVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ----------------- 469 (1065)
Q Consensus 411 ----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~----------------- 469 (1065)
.+...++..+|||......+.+. .|. +.++.+++|.|+|.+...
T Consensus 261 ~~~~~v~~~~~~~~vgE~~~~~~~~~~------~y~---------~~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~ 325 (589)
T 3aj7_A 261 FIRNRVKDGREIMTVGEMQHASDETKR------LYT---------SASRHELSELFNFSHTDVGTSPLFRYNLVPFELKD 325 (589)
T ss_dssp HHHHHCSSCCCCEEEEEEECCCHHHHH------HHH---------CGGGCSCSEEEECHHHHTTEETTEEEEECCCCHHH
T ss_pred HHHHHhccCCCeEEEEEeCCCCHHHHH------Hhh---------ccCCCccceeeehhhhhhhcccccccccCCCCHHH
Confidence 44335678889998654433221 111 222346788999887532
Q ss_pred H--HHHHHHhcCc-CCcccchhhcccCccccchhhhhh
Q psy15051 470 V--VSHFIYCGIV-DDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 470 ~--~~~~Wq~~m~-~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
+ .+..|+..++ ..++..++++|||++|.++|++++
T Consensus 326 l~~~l~~~~~~~~~~~~~~~~fl~NHD~~R~~~~~~~~ 363 (589)
T 3aj7_A 326 WKIALAELFRYINGTDCWSTIYLENHDQPRSITRFGDD 363 (589)
T ss_dssp HHHHHHTTTGGGTTSSCCCEECSCCTTSCCHHHHHSCC
T ss_pred HHHHHHHHHHhcccCCCcccccccCCCCcchHHHhCCC
Confidence 1 5677888876 567777888999999999999865
|
| >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=461.51 Aligned_cols=312 Identities=22% Similarity=0.318 Sum_probs=227.5
Q ss_pred CchhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCc
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSR 102 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy 102 (1065)
..++||+++|||||||+||++++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 15 ~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~LdyL~-~LGv~---------------~I~l~-Pi~~~~~~~~GY 77 (570)
T 1m53_A 15 EYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLK-SLGID---------------AIWIN-PHYDSPNTDNGY 77 (570)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTS
T ss_pred cCchhHhhCcEEEEechhhccCCCCCccCHHHHHHHHHHHH-HcCCC---------------EEEEC-CcccCCCCCCCC
Confidence 45789999999999999999999999999999999999999 99999 66666 888888788999
Q ss_pred cceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccc
Q psy15051 103 RWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQ 181 (1065)
Q Consensus 103 ~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~ 181 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 78 --------d~~dy-------~~idp~~Gt~~df~~lv~~aH~~Gi~Vi--------lD~-------V~NH~s-------- 119 (570)
T 1m53_A 78 --------DISNY-------RQIMKEYGTMEDFDSLVAEMKKRNMRLM--------IDV-------VINHTS-------- 119 (570)
T ss_dssp --------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC--------
T ss_pred --------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc--------
Confidence 66666 667779999999999997 799999999 888 999976
Q ss_pred ccCccccccCCC----cceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchh
Q psy15051 182 CQGQNFLFQGRP----VNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSL 257 (1065)
Q Consensus 182 ~~~~~~~f~~~~----~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1065)
.+|+||++.. ..+.+|+. |.+......+++|.
T Consensus 120 --~~~~wf~~~~~~~~~~y~d~y~------------------------------------------~~~~~~g~~p~~~~ 155 (570)
T 1m53_A 120 --DQHPWFIQSKSDKNNPYRDYYF------------------------------------------WRDGKDNQPPNNYP 155 (570)
T ss_dssp --TTSHHHHHHHHCTTCTTGGGBC------------------------------------------EECCSSSSCSSCCB
T ss_pred --cccHHHHHhhcCCCCCCcccee------------------------------------------ecCCCCCCCCcccc
Confidence 6778886531 11222221 11100000111111
Q ss_pred hhcc--ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhh
Q psy15051 258 QALQ--RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFC 335 (1065)
Q Consensus 258 ~~~~--~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
..++ .+-..+...++++|.|. ..|||||++||+||
T Consensus 156 ~~f~~~~w~~~~~~~~~y~~~f~-------------------~~~pdLN~~np~Vr------------------------ 192 (570)
T 1m53_A 156 SFFGGSAWQKDAKSGQYYLHYFA-------------------RQQPDLNWDNPKVR------------------------ 192 (570)
T ss_dssp CTTSSBSEEECTTTCCEEECSSC-------------------TTCCBBCTTSHHHH------------------------
T ss_pred ccCCCccccccCCCCcEEECccc-------------------CcCCccCCCCHHHH------------------------
Confidence 1110 00001122345599999 79999999999997
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 336 YEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 336 ~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
++|+++++||+++||||||||||++|.++.+++|+|..+. ..+ +.++.++|++|+++++||+.+...
T Consensus 193 ---~~l~~~~~~Wl~~gvDGfRlDa~~~i~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~l~~~~~~v~~~ 259 (570)
T 1m53_A 193 ---EDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQ---------KNF-AEQYTMGPNIHRYIQEMNRKVLSR 259 (570)
T ss_dssp ---HHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHH---------HTH-HHHTTCCTTHHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHcCCCEEEEccccccccccccccCCCccc---------ccc-cccccCchHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999877887764210 001 335789999999999999855434
Q ss_pred CCccCCCCCCccccc-eeeecccCccccCCCCcccccCCCcccccccccchhhhH------------------H-HHHHH
Q psy15051 416 GNQSADRQPSCADKF-AIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ------------------V-VSHFI 475 (1065)
Q Consensus 416 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~------------------~-~~~~W 475 (1065)
++..+|||......+ ...+. +.++.+++|+|+|.+... . .+..|
T Consensus 260 ~~~~~vgE~~~~~~~~~~~y~----------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 323 (570)
T 1m53_A 260 YDVATAGEIFGVPLDRSSQFF----------------DRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKM 323 (570)
T ss_dssp SCCEEEEECTTCCGGGTHHHH----------------CGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHH
T ss_pred CCeEEEecccCCCHHHHHHHh----------------cccCcccceeechhhhhcccccccccccCCCCHHHHHHHHHHH
Confidence 588999998633222 11111 222345666777665421 1 66788
Q ss_pred HhcCcCCcccchhhcccCccccchhhhhhh
Q psy15051 476 YCGIVDDTSALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 476 q~~m~~~~~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
+..+...++..++..|||++|.++|++.+.
T Consensus 324 ~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~ 353 (570)
T 1m53_A 324 DVTVGKYGWNTFFLDNHDNPRAVSHFGDDR 353 (570)
T ss_dssp HHHHTTTCCBEECSCCTTSCCHHHHHSCCS
T ss_pred HHhcccCCcccccCCCCCchhhHHhhCCCc
Confidence 888876677777889999999999998764
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=466.47 Aligned_cols=377 Identities=18% Similarity=0.192 Sum_probs=262.7
Q ss_pred hhhcccceEEEEecccccCcCCCCC---CCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC------
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGI---GDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN------ 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~---Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~------ 624 (1065)
..||+++|||||||++|++++++++ |+|.|....+. .++ +||+++|+|||+||||+||||||+++++
T Consensus 427 ~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~---~~l-~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~ 502 (921)
T 2wan_A 427 PANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGT---KGP-DHVKTGIDSLKELGITTVQLQPVEEFNSIDETQP 502 (921)
T ss_dssp CSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSC---BCG-GGCBCHHHHHHHHTCCEEEESCCEEESSSCTTST
T ss_pred CCCchhcEEEEEEcCcccCCCCCCCCCCCCeeheecccc---ccc-cccchhhHHHHHcCCCEEEeCCccccCccccccc
Confidence 4689999999999999998776654 55552211110 011 5788889999999999999999999875
Q ss_pred --CCCCCcCCCCcccCCC-----CCC--HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccccc
Q psy15051 625 --GDIGYDISNHTEVGKD-----FGT--MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYL 695 (1065)
Q Consensus 625 --~~~GY~~~dy~~idp~-----~Gt--~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 695 (1065)
.+|||++.||++++++ +|+ ++|||+||++|
T Consensus 503 ~~~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~a----------------------------------------- 541 (921)
T 2wan_A 503 DTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSL----------------------------------------- 541 (921)
T ss_dssp TSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHH-----------------------------------------
T ss_pred CcCCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHH-----------------------------------------
Confidence 3699999999755555 555 79999999999
Q ss_pred CccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCc-hhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCc
Q psy15051 696 NPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKH-DWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWK 774 (1065)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~-~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~ 774 (1065)
|++||+||||+|+||++..+ .||.... +.||+. ...+|. .....+|.
T Consensus 542 ------------------------H~~GI~VILDvV~NHt~~~~~~~f~~~~------p~y~~~-~~~~g~-~~~~~g~~ 589 (921)
T 2wan_A 542 ------------------------HQQRIGVNMDVVYNHTFDVMVSDFDKIV------PQYYYR-TDSNGN-YTNGSGCG 589 (921)
T ss_dssp ------------------------HHTTCEEEEEECTTCCSCSSSSHHHHHS------TTTTBC-BCTTSC-BCCTTSSS
T ss_pred ------------------------HHcCCEEEEEEccccccccccccccCCC------CCeEEE-cCCCCc-ccCCCCcc
Confidence 89999999999999999998 7988753 234443 223343 11223343
Q ss_pred c-ccCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHHHhhhcc--CC
Q psy15051 775 H-INITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEKVAKYYG--TG 819 (1065)
Q Consensus 775 ~-ln~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~~~~y~~--~~ 819 (1065)
. ||+.+|+||++|.+++ ++..|++++|||.|............ ..
T Consensus 590 ~dln~~~p~Vr~~i~d~l~~Wl~e~gVDGfR~Da~~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~~~~~~~~~~~~~~ 669 (921)
T 2wan_A 590 NEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINPGIVLYGEPWTGGTSGLSSDQLVTKG 669 (921)
T ss_dssp CCBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGGCHHHHHHHHHHHHHHCTTCEEEECSSCSSCCSSCTTTSCCTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHHHHHhCCceEEEEecccCCCcccccchhcccc
Confidence 3 9999999999999982 22456899999999742111111110 00
Q ss_pred CCccc-cccccHHHHHHhhcCC--------------ChHHHHHHHHHHhhcCC-CCCcccccccCCChhhHhhhcC----
Q psy15051 820 DTQGT-HLSVNYEIMNKFGATS--------------NAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRYS---- 879 (1065)
Q Consensus 820 ~~~~~-d~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~~---- 879 (1065)
...++ ...|++.++..+.... ....+...+......+. ......+|++|||+.|+.++++
T Consensus 670 ~~~gf~~~~~nd~~rd~~~~~~f~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~p~~~vnfv~nHD~~rl~d~l~~~~~ 749 (921)
T 2wan_A 670 QQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGSIQDFTSAPSETINYVTSHDNMTLWDKILASNP 749 (921)
T ss_dssp TTTTTTCEEECHHHHHHHHCCTTCTTCCCTTTTCSSCHHHHHHHHBTTTTTTCSSGGGEEECSCCSSSCCHHHHHHHHCT
T ss_pred ccCCCCeEEechHHHHHHhcccccccchhhhcCChhHHHHHHHHHhcchhhcccCcceeEEeeeccCCccHHHHhhhhCC
Confidence 11233 3567888877664311 11222222211111121 1223346999999999988642
Q ss_pred -------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCC
Q psy15051 880 -------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGF 952 (1065)
Q Consensus 880 -------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gF 952 (1065)
.+++|++++++|++||+||||||||+|+.+.. +. +.++++..+.+|+|+...
T Consensus 750 ~~~~~~~~~~~rla~a~llt~pG~P~iy~GdE~g~~~~g-------~~----------n~y~~~d~~~~~~W~~~~---- 808 (921)
T 2wan_A 750 SDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGG-------ND----------NSYNAGDSVNQFDWSRKA---- 808 (921)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSBSEEEEETTGGGTCCCTT-------CS----------CCTTCCHHHHSCCTHHHH----
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCcEEEcchhhcccCCC-------CC----------cccCCcccccccCCcccc----
Confidence 14688999999999999999999999998752 10 012233345677876421
Q ss_pred CCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe-------EEEccCCcEEEEEEEcC-----C
Q psy15051 953 SKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-------KISTPNNYVFILTRTEG-----S 1020 (1065)
Q Consensus 953 s~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-------~~l~~~~~viaf~R~~~-----~ 1020 (1065)
...+++++||+|++|||++|+|+.|++ .++..++++++|.|... .
T Consensus 809 -----------------------~~~~l~~~~~~Li~lRk~~paL~~g~~~~i~~~~~~~~~~~~vlaf~r~~~~~~~~~ 865 (921)
T 2wan_A 809 -----------------------QFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTFLESPTNTVAFELKNYANHDTW 865 (921)
T ss_dssp -----------------------HTHHHHHHHHHHHHHHHHCGGGGCCSHHHHHHHEEECCCCTTCEEEEECSSGGGCSS
T ss_pred -----------------------cchHHHHHHHHHHHHHhhChhhhCCchhhhccceEEecCCCcEEEEEEecCCCCCCC
Confidence 235799999999999999999999875 34555678999999853 4
Q ss_pred cEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCC
Q psy15051 1021 TSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVN 1056 (1065)
Q Consensus 1021 ~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~ 1056 (1065)
+.++||+|++.+++++.|+. +.+++++++..
T Consensus 866 ~~~lVv~N~~~~~~~~~Lp~-----g~w~~~~~~~~ 896 (921)
T 2wan_A 866 KNIIVMYNPNKTSQTLNLPS-----GDWTIVGLGDQ 896 (921)
T ss_dssp SCEEEEEECSSSCEEEECCS-----SCEEEEEETTE
T ss_pred CeEEEEEECCCCCEEEECCC-----CcEEEEEcCCC
Confidence 68999999999999999874 56777777653
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=475.98 Aligned_cols=402 Identities=15% Similarity=0.155 Sum_probs=281.7
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCC--------
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPN-------- 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-------- 624 (1065)
...|+++||||+|+++|+..+++...+.+ |+|.+++.- .+++++|||||+||||+||||||+++++
T Consensus 247 ~~~~~~~vIYE~HVr~ft~~~~~~~~~~~-----Gtf~g~~~~~~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~ 321 (884)
T 4aio_A 247 LDSFSDITIYELHIRDFSAHDGTVDSDSR-----GGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNW 321 (884)
T ss_dssp CSCGGGCCEEEECHHHHHTTCTTSCTTTT-----TSGGGGSCTTSHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGC
T ss_pred CCCcccCEEEEEEcCccccCCCCCCcccc-----CcccccccchhhHHHHhHHHHHcCCCEEEeccccccCccccccccc
Confidence 34588999999999999976655444444 666666532 3568999999999999999999999763
Q ss_pred ------------------------------CCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeecccc
Q psy15051 625 ------------------------------GDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 625 ------------------------------~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+|||++.+||+|+++||| ++|||+||++|
T Consensus 322 ~~~d~~~l~~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~~~ygt~~d~~~~~~efk~LV~~a------------- 388 (884)
T 4aio_A 322 KFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQAL------------- 388 (884)
T ss_dssp CCCCHHHHTTSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEECGGGSSCSSTTHHHHHHHHHHHHH-------------
T ss_pred cccccccccccCCchHHHHhhhhhhhhccccccCcCcccccCCCcccccCccccchHHHHHHHHHHH-------------
Confidence 3599999999999999998 45699999999
Q ss_pred cccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc
Q psy15051 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ 747 (1065)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~ 747 (1065)
|++||+||||+|+|||+.+|+||.++..
T Consensus 389 ----------------------------------------------------H~~GIkVIlDvV~NHts~~h~wf~~~~~ 416 (884)
T 4aio_A 389 ----------------------------------------------------NRIGLRVVMDVVYNHLDSSGPCGISSVL 416 (884)
T ss_dssp ----------------------------------------------------HHTTCEEEEEECCSBCSCCSSSSTTCCH
T ss_pred ----------------------------------------------------HhcCCceeeeeccccccCCCcchhhccc
Confidence 8999999999999999999999987643
Q ss_pred c-CCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHHHH----hcC-------------------------
Q psy15051 748 K-IDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDVVQ----SFP------------------------- 795 (1065)
Q Consensus 748 ~-~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~lk----~~~------------------------- 795 (1065)
. ..++..|+.+. +|. ..+.|.. +|+.++++++++.+.++ ++.
T Consensus 417 ~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~v~~~~~d~~~~w~~~~~vDg~R~D~~~~~~~~~~~~~~~~~~ 490 (884)
T 4aio_A 417 DKIVPGYYVRRDT---NGQ---IENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQ 490 (884)
T ss_dssp HHHSTTTSBCBCT---TSC---BCCTTSSSBBCTTSHHHHHHHHHHHHHHHHHSCCCEEEETTGGGSBHHHHHHHHHHHH
T ss_pred cccCcceeeccCC---CCC---ccCcCCccccCCCCchhhhhhhhhhhhhhhhcccccCCcccchhhhhHHHHhhhhhcc
Confidence 2 33344444433 232 1222222 89999999999988722 211
Q ss_pred -----------CceEEEeecCCCChHHHhhhccCCCC----ccccccccHHHHHHhhcCC--------------------
Q psy15051 796 -----------LILMIITEAYSPSLEKVAKYYGTGDT----QGTHLSVNYEIMNKFGATS-------------------- 840 (1065)
Q Consensus 796 -----------~~~~ligE~~~~~~~~~~~y~~~~~~----~~~d~~~~~~~~~~~~~~~-------------------- 840 (1065)
....+++|.|................ ...-..|+..+++.++...
T Consensus 491 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~e~nd~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~ 570 (884)
T 4aio_A 491 SLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNG 570 (884)
T ss_dssp TCCHHHHSSCGGGCEEEECCCCCGGGGGGTTSSBCCTTTTTTSSCEEEEHHHHHHHHCSCTTSCTTCCCTTTTTTTSCCS
T ss_pred cccccccccccccceecccCCcccccccccccccchhccCCcccchhhhhhHHhhhhccccccchhhhhhccccccchhh
Confidence 14678999987522111110000000 0011224444444332100
Q ss_pred ----ChH-H------HHHHHHHHhhc----------------------C--------CCCCcccccccCCChhhHhhhcC
Q psy15051 841 ----NAK-D------LENVVNAYLKS----------------------L--------PSGKWSSWMVGGHSITRIATRYS 879 (1065)
Q Consensus 841 ----~~~-~------l~~~l~~~~~~----------------------~--------~~~~~~~~flenHD~~Rl~s~~~ 879 (1065)
... . ....+...... . ....+.++|++|||+.|+.++++
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~nfl~NHD~~r~~~~~~ 650 (884)
T 4aio_A 571 FYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVIS 650 (884)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHBTCBSSCEEECTTSCEEETTTSBCTTSCBSCCBSSGGGEEECSCCSSSSCHHHHHH
T ss_pred hhccccchhhhhhhhhhhhhhhccCcchhhhhccccchhhccchhhhhhcccchhhccCchhhcccccCCCCCccccccc
Confidence 000 0 01111110000 0 00123346999999999988764
Q ss_pred H------------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcc
Q psy15051 880 P------------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQ 947 (1065)
Q Consensus 880 ~------------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~ 947 (1065)
. +++|++++++|++||+||||||||+||++.. ++.++.. ......+|.+|.+|+|+..
T Consensus 651 ~~~~~~~~~~~r~~r~kla~alllt~pG~P~IY~GdEiG~t~~~-------~~n~y~~---~~~~~~~D~~R~p~~W~~~ 720 (884)
T 4aio_A 651 VKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSI-------DRDSYNS---GDWFNKLDFTYETNNWGVG 720 (884)
T ss_dssp HHSCTTSCHHHHHHHHHHHHHHHHTSBSEEEEETTGGGTCCCTT-------CSCGGGS---HHHHHCCCTTCSCCSCSSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcEEEcccccCccCCC-------CcccccC---cchhcccccccCcCCcCcc
Confidence 2 3678899999999999999999999998753 2222111 1123468889999999999
Q ss_pred cccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeE-------EEcc----CCcEEEEEE
Q psy15051 948 ENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-------ISTP----NNYVFILTR 1016 (1065)
Q Consensus 948 ~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~-------~l~~----~~~viaf~R 1016 (1065)
..++|+...+|++++.++...+++.|..++.+++++||+||+|||++|+|+.|++. ++.. ...+++|.+
T Consensus 721 ~~~g~~~~~~w~~~~~~~~~~~v~~q~~d~~sl~~~yr~Li~LRk~~paL~~g~~~~i~~~~~~~~~~~~~~~gv~~~~~ 800 (884)
T 4aio_A 721 LPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGI 800 (884)
T ss_dssp CCCHHHHGGGHHHHHHHHTCGGGSCCHHHHHHHHHHHHHHHHHHTTCGGGGCCSHHHHHHHEEECSCSTTCCTTEEEEEE
T ss_pred cCccccCCccccccccccccchhhhhhcchHHHHHHHHHHHHHHhcChhhhcCCHHHHhhcceeeccCccccCceEEEEe
Confidence 99999988999999999999999999888899999999999999999999999743 2221 246788876
Q ss_pred Ec-------------CCcEEEEEEECCCCcEEEEcCCC
Q psy15051 1017 TE-------------GSTSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1017 ~~-------------~~~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
.+ +.+.+|||+|++.++++++|+..
T Consensus 801 ~d~~~~~~~~~~r~~~~~~llVv~N~s~~~~~v~LP~~ 838 (884)
T 4aio_A 801 EDARGESPEMAQLDTNFSYVVTVFNVCPHEVSMDIPAL 838 (884)
T ss_dssp ECCCSSSCSSCCCCSSEEEEEEEEECSSSCEEEECGGG
T ss_pred ccCCCcceeEEEecCCCCEEEEEEeCCCCCEEEECCCC
Confidence 53 34689999999999999999864
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=443.94 Aligned_cols=370 Identities=16% Similarity=0.226 Sum_probs=245.9
Q ss_pred CChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhc----ccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC--
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLE----LTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG-- 625 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~----~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~-- 625 (1065)
.++.||+++|||||||++|+++++++.|++. .++|+| ||+ +|++++|+|||+||||+||||||+++++.
T Consensus 76 ~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~----~~~~~~~~~~g~~-~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~ 150 (637)
T 1gjw_A 76 KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYE----ENDVLGFREAGTF-FKMMLLLPFVKSLGADAIYLLPVSRMSDLFK 150 (637)
T ss_dssp CSGGGGGGCCEEEECHHHHTCCCTTSSSCCC----SBCTTSCBCSCCH-HHHHHTHHHHHHHTCCEEEECCCEEECCSSC
T ss_pred CccCchhhCeEEEEeeccccCCCCCCCCccc----cccccchhccccH-HHHHHHHHHHHHcCCCEEEeCCCeecccccc
Confidence 4578999999999999999988765555433 223333 333 59999999999999999999999998642
Q ss_pred ----CCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 626 ----DIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 626 ----~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
+|||++.||++|+|+||| .+|||+||++||++||+||||
T Consensus 151 ~g~~~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD----------------------------- 201 (637)
T 1gjw_A 151 KGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILD----------------------------- 201 (637)
T ss_dssp SSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEE-----------------------------
T ss_pred cCCCCCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEE-----------------------------
Confidence 469999999999999999 799999999995555555555
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhh---------------------------
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSA--------------------------- 746 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~--------------------------- 746 (1065)
+|+||++.+++|+.+..
T Consensus 202 ------------------------------------~V~nH~~~~~~~~~~~p~~f~~~~~~~~~~y~~p~~~~l~~~~~ 245 (637)
T 1gjw_A 202 ------------------------------------FIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVP 245 (637)
T ss_dssp ------------------------------------ECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTSCSBCC
T ss_pred ------------------------------------ECcCCCcCcchhhhhCCceeEecccccccccCCccccccccCCc
Confidence 55555554444432200
Q ss_pred -----------------------------------------------------ccCCCCCcceeecCCC--C--------
Q psy15051 747 -----------------------------------------------------QKIDPYTNYYVWKDGL--N-------- 763 (1065)
Q Consensus 747 -----------------------------------------------------~~~~~~~d~y~~~~~~--d-------- 763 (1065)
...+.|.+||...... +
T Consensus 246 ~~~~~~~~Y~~~~~~~~~~~f~~~~~~~~p~~w~~~~~~~g~~~~~~~~~fg~~~~~~~~dw~~~~~~~w~d~~~l~~~~ 325 (637)
T 1gjw_A 246 DEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYL 325 (637)
T ss_dssp CHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEECCCBS
T ss_pred ccccccccccChhhhhhhhhcccCccccChhhcccccccccchhhhhhhccccccCcccccccccCCCCcccceeeeccc
Confidence 0012233333100000 0
Q ss_pred CCCC-----C--CCCCC----------ccccCCCHHHHHHHHHH--------------------------------HHhc
Q psy15051 764 GKPG-----T--PPNNW----------KHINITSREVMRSQKDV--------------------------------VQSF 794 (1065)
Q Consensus 764 G~p~-----~--~~~~W----------~~ln~~n~~v~~~l~~~--------------------------------lk~~ 794 (1065)
+.|. . ....| ..+|+.||+|+++|.++ +++.
T Consensus 326 ~~p~~~~~~~~~~~~dy~~f~~~~~~~~~ln~~np~V~~~l~d~~~~W~~e~gvDGfRlD~a~~l~~~f~~~~~~~v~~~ 405 (637)
T 1gjw_A 326 DHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIKNVKEY 405 (637)
T ss_dssp SCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred CCchhhhhccccCCCcceecchhhhcccCcccCCHHHHHHHHHHHHHHhhhcCCceEEecchhhCCHHHHHHHHHHHHHh
Confidence 0000 0 00000 00478999999999887 2334
Q ss_pred CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhH
Q psy15051 795 PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRI 874 (1065)
Q Consensus 795 ~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl 874 (1065)
.|++++|||.|..... ..+.+ .++|+++++.+.... .......+...+ .. ......+|++|||+.|+
T Consensus 406 ~p~~~ligE~~~~~~~--~~~~~----~gfd~~~~~~~~~~~-~~~~~~~~~~~l----~~--~~~~~v~fl~nHD~~Rl 472 (637)
T 1gjw_A 406 DPAFVMIAEELDMEKD--KASKE----AGYDVILGSSWYFAG-RVEEIGKLPDIA----EE--LVLPFLASVETPDTPRI 472 (637)
T ss_dssp CTTCEEEECCCCGGGH--HHHHH----HTCSEECCCHHHHHT-CTTTGGGHHHHH----HT--CSSCEEECSCCTTSCCG
T ss_pred CCCeEEEEeCCCCcch--hhHhh----cCCceEeccchhccc-cHHHHHHHHHhh----hc--cchHHhhcccCCCcccc
Confidence 5689999999986332 13443 346777777765542 222334443222 11 22333459999999999
Q ss_pred hhhcCH-HHHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCccccc--
Q psy15051 875 ATRYSP-DLVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENA-- 950 (1065)
Q Consensus 875 ~s~~~~-~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~-- 950 (1065)
.++++. .+.++++++++++| |+||||||||+|+.++.. .....||. +|.+|+|.+....
T Consensus 473 ~~~~~~~~~~~~a~~l~l~~~~GiP~iy~GdE~G~~~p~~-~g~~~d~~----------------~R~~~~~~Dp~~~~~ 535 (637)
T 1gjw_A 473 ATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMN-LGLDTDPN----------------LRKVLSPTDEFFGKL 535 (637)
T ss_dssp GGSTTHHHHHHHHHHHHHTSTTEEEEEETTGGGTCCSCSC-CCSSCCGG----------------GGGCSCTTSTTTTCC
T ss_pred cccccCcHHHHHHHHHHHHcCCCCcEEEeeeecCccCccc-cCCCCCcc----------------ccccccccCcccccc
Confidence 999875 46788888999998 999999999999986420 00001222 4566666332110
Q ss_pred -CCCCC-CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccCCcEEEEEEEcCCcEEEEEE
Q psy15051 951 -GFSKA-KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPNNYVFILTRTEGSTSVYLII 1027 (1065)
Q Consensus 951 -gFs~~-~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~~~viaf~R~~~~~~vlVv~ 1027 (1065)
-|... .+|- ....+++++||+|++|||++|+| +.|++..+ .++++++|.|..+++.++||+
T Consensus 536 ~~~~~~~l~W~---------------~~~~~l~~~~~~Li~lRk~~paL~~~g~~~~~-~~~~vlaf~R~~~~~~~lvv~ 599 (637)
T 1gjw_A 536 AFFDHYVLHWD---------------SPDRGVLNFIKKLIKVRHEFLDFVLNGKFENL-TTKDLVMYSYEKNGQKIVIAA 599 (637)
T ss_dssp TTTSCCCCCTT---------------SCCHHHHHHHHHHHHHHHHTHHHHHHSEEEEC-CCSSEEEEEEEETTEEEEEEE
T ss_pred ccccccccchh---------------hcChHHHHHHHHHHHHHhhChhhhhCCcEEEe-cCCCEEEEEEEcCCceEEEEE
Confidence 11111 2230 01357999999999999999999 88998854 456899999998889999999
Q ss_pred ECCCCcEEEE
Q psy15051 1028 NLNSRTETVD 1037 (1065)
Q Consensus 1028 N~s~~~~~v~ 1037 (1065)
|+++++++++
T Consensus 600 N~~~~~~~v~ 609 (637)
T 1gjw_A 600 NVGKEPKEIT 609 (637)
T ss_dssp ECSSSCEEEE
T ss_pred eCCCCcEEec
Confidence 9999998887
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=446.14 Aligned_cols=359 Identities=19% Similarity=0.249 Sum_probs=253.4
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
|+++||||||+++|+. .|||+ ||+++|+|||+||||+||||||++++. .+|||++.||+
T Consensus 124 ~~~~viYei~~~~f~~-----~G~~~---------------gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~ 183 (602)
T 2bhu_A 124 LADCVFYEVHVGTFTP-----EGTYR---------------AAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFY 183 (602)
T ss_dssp GGGCCEEEECHHHHSS-----SCSHH---------------HHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEE
T ss_pred cccceEEEEeeccccc-----CCCHH---------------HHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCc
Confidence 8999999999999974 68999 999999999999999999999999875 45899999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|||+|||++|||+||++|
T Consensus 184 ~~~~~~Gt~~d~~~lv~~~------------------------------------------------------------- 202 (602)
T 2bhu_A 184 APYAPYGRPEDLMALVDAA------------------------------------------------------------- 202 (602)
T ss_dssp EECGGGCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred ccCcCCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccCCCHHHHHHHHHHHHh-
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INITSREVMRSQKDVVQS- 793 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~~n~~v~~~l~~~lk~- 793 (1065)
|++||+||||+|+||++.+++|+.... ++||... ....|+. +|+.+|+|+++|.++++.
T Consensus 203 ----H~~Gi~VilD~V~NH~~~~~~~~~~~~------~~~~~~~---------~~~~w~~~ln~~~~~v~~~i~~~~~~W 263 (602)
T 2bhu_A 203 ----HRLGLGVFLDVVYNHFGPSGNYLSSYA------PSYFTDR---------FSSAWGMGLDYAEPHMRRYVTGNARMW 263 (602)
T ss_dssp ----HHTTCEEEEEECCSCCCSSSCCHHHHC------GGGEEEE---------EECSSSEEECTTSHHHHHHHHHHHHHH
T ss_pred ----HHCCCEEEEEecccccccCCccccccC------cccccCC---------CCCCCCCCccCCCHHHHHHHHHHHHHH
Confidence 888889999999999998888876532 2455421 1245655 999999999999987221
Q ss_pred ----------------c------------------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHh---
Q psy15051 794 ----------------F------------------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF--- 836 (1065)
Q Consensus 794 ----------------~------------------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~--- 836 (1065)
+ .+++++|||.|...+..+.. + .++++.|++.+...+
T Consensus 264 ~~~~gvDGfR~D~~~~i~~~~~~~fl~~~~~~v~~~~~~~li~E~~~~~~~~~~~--~----~g~~~~~n~~~~~~l~~~ 337 (602)
T 2bhu_A 264 LRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVT--V----NHLDGIWTDDFHHETRVT 337 (602)
T ss_dssp HHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHH--T----TCCSEEECTHHHHHHHHH
T ss_pred HHHhCCCEEEEechHhhhccchHHHHHHHHHHHhhcCCeEEEEEeCCCCcccccC--C----CCcceEECchhhHHHHHH
Confidence 1 03678999999764443332 1 346666666555433
Q ss_pred -hcCC-------C--hHHHHHHHHHH---hhcC----------------CCCCcccccccCCChh-------hHhhh--c
Q psy15051 837 -GATS-------N--AKDLENVVNAY---LKSL----------------PSGKWSSWMVGGHSIT-------RIATR--Y 878 (1065)
Q Consensus 837 -~~~~-------~--~~~l~~~l~~~---~~~~----------------~~~~~~~~flenHD~~-------Rl~s~--~ 878 (1065)
.+.. . ...+...+... .... ......++|++|||+. |+.+. .
T Consensus 338 ~~g~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fl~nHD~~~n~~~g~r~~~~~~~ 417 (602)
T 2bhu_A 338 LTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGV 417 (602)
T ss_dssp HHCCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTC
T ss_pred hcCCCcccccccccCHHHHHHHHHhccccccccchhhccccccCccccCCCccceeeehhcCccccccCccchhhhhhcc
Confidence 2211 1 14455544431 0000 0112235699999983 55443 3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccc----ccc-cccCCCCCcCCCCcccccCCC
Q psy15051 879 SPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDN----YLK-VCRDGSRVPFQWNDQENAGFS 953 (1065)
Q Consensus 879 ~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~----~~~-~~rd~~R~~m~W~~~~~~gFs 953 (1065)
..+++|++++++|++||+||||||||+|+++....++++ ||+..+..+++ +.. ..++..|.|.+++. .+|+
T Consensus 418 ~~~~~k~a~a~ll~~pG~P~iy~G~E~G~~~~~~~~~~~-D~~~~~~~r~g~~~~~~~~~~~~~~r~p~~~~~---~~f~ 493 (602)
T 2bhu_A 418 TLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDH-AGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAE---QTFL 493 (602)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCC-CHHHHHHHHHHHHHHC---------CCCCTTSH---HHHH
T ss_pred cHHHHHHHHHHHHhCCCCcEEecchhhcCcCCCcccccC-CHHHhhhhhhcchhhhhhcccccccCCCCCccc---cccc
Confidence 557899999999999999999999999999976666777 77633211110 000 00001222322211 0122
Q ss_pred CCCCCCCCCCCcccccHH-HhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEcc---CCcEEEEEEEcCCcEEEEEEEC
Q psy15051 954 KAKSWLPVHPNYWTLNAQ-AEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTP---NNYVFILTRTEGSTSVYLIINL 1029 (1065)
Q Consensus 954 ~~~~wl~~~~~~~~~~~~-~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~---~~~viaf~R~~~~~~vlVv~N~ 1029 (1065)
.. ..++. .+...+.+++++||+|++|||++|+|+.|+++.+.. ++ +++|.|..+++.++||+|+
T Consensus 494 ~~-----------~l~w~~~q~~~~~s~~~~yr~Li~LRk~~pal~~g~~~~~~~~~~~~-v~a~~R~~~~~~~lVv~N~ 561 (602)
T 2bhu_A 494 NS-----------KLNWAEREGGEHARTLRLYRDLLRLRREDPVLHNRQRENLTTGHDGD-VLWVRTVTGAGERVLLWNL 561 (602)
T ss_dssp TT-----------SCCSGGGGSHHHHHHHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT-EEEEEEEETTEEEEEEEEC
T ss_pred cc-----------cCChhhhcccccHHHHHHHHHHHHHHhcChhhhcCCcccccccccCC-eEEEEEEeCCCcEEEEEeC
Confidence 21 11221 233346789999999999999999999998765442 55 9999999888999999999
Q ss_pred CCCcEEEE
Q psy15051 1030 NSRTETVD 1037 (1065)
Q Consensus 1030 s~~~~~v~ 1037 (1065)
++++++++
T Consensus 562 s~~~~~~~ 569 (602)
T 2bhu_A 562 GQDTRAVA 569 (602)
T ss_dssp SSSCEEGG
T ss_pred CCCcccCC
Confidence 99988654
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=437.21 Aligned_cols=358 Identities=16% Similarity=0.211 Sum_probs=244.7
Q ss_pred ccceEEEEecccccCcCCCC-CCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCCC-CCCCcCCCC
Q psy15051 558 KNTVIYQILVPSFKDSNNDG-IGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPNG-DIGYDISNH 634 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~-~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~~-~~GY~~~dy 634 (1065)
++++|||||+++|+++++++ .|+|+ ||+++| +|||+||||+||||||++++.. +|||++.||
T Consensus 130 ~~~~iYei~~~~f~~~~~~g~~g~~~---------------~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y 194 (617)
T 1m7x_A 130 APISIYEVHLGSWRRHTDNNFWLSYR---------------ELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGL 194 (617)
T ss_dssp SCCEEEEECTTSSCBCTTTCCBCCHH---------------HHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEE
T ss_pred CCcEEEEEEHHHhcCCCCCCCccCHH---------------HHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccC
Confidence 67899999999999877666 78999 999997 9999999999999999999875 599999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
++|+|+|||++|||+||++|
T Consensus 195 ~~~~~~~Gt~~~~~~lv~~~------------------------------------------------------------ 214 (617)
T 1m7x_A 195 YAPTRRFGTRDDFRYFIDAA------------------------------------------------------------ 214 (617)
T ss_dssp EEECGGGSCHHHHHHHHHHH------------------------------------------------------------
T ss_pred CccCccCCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCC-chhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH-
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNK-HDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV- 790 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~-~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~- 790 (1065)
|++||+||||+|+||++.+ |.|..- .+. .+|.+.+..+|. ..+|.. ||+.+|+|+++|.++
T Consensus 215 -----H~~Gi~VilD~V~NH~~~~~~~~~~~--d~~----~~y~~~~~~~g~----~~~w~~~~ln~~~p~v~~~i~~~~ 279 (617)
T 1m7x_A 215 -----HAAGLNVILDWVPGHFPTDDFALAEF--DGT----NLYEHSDPREGY----HQDWNTLIYNYGRREVSNFLVGNA 279 (617)
T ss_dssp -----HHTTCEEEEEECTTSCCCSTTSSTTG--GGS----CSSBCC---------------CCCBCTTSHHHHHHHHHHH
T ss_pred -----HHCCCEEEEEEecCcccCccchhhhc--CCC----ccccccCcccCC----cCCCCCceecCCCHHHHHHHHHHH
Confidence 6666677777777777433 344321 111 233322211221 234544 677777777776666
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
+++..|++++|||.|...+.....
T Consensus 280 ~~W~~~~gvDGfR~D~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~~iaE~~~~~~~~~~~- 358 (617)
T 1m7x_A 280 LYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRP- 358 (617)
T ss_dssp HHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTTTBC-
T ss_pred HHHHHHhCcCEEEEcchhhhhhccccccccccccccccccCCchHHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceee-
Confidence 222345899999998764443322
Q ss_pred ccCCCCccccccccHHHHHHh----hcC-CChHHHHHHHHHHhhcCCCCCcccccccCCChh-----hHhhhcCH-----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKF----GAT-SNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT-----RIATRYSP----- 880 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~----~~~-~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~----- 880 (1065)
...+ ..++++.+++.++... ... .........+..... . .......+++|||+. |+.+++++
T Consensus 359 ~~~~-g~gfd~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~fv~~~nHD~~~~g~~~~~~~~~g~~~~~ 435 (617)
T 1m7x_A 359 QDMG-GLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGIL-Y-NYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 435 (617)
T ss_dssp TTTT-BSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGT-T-TTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred ccCC-CCccCcEeCCchHHHHHHHhccCccchhhhhccchhhhh-c-ccccceEEEeCCCCcccCccchhhhCCCcHHHH
Confidence 2211 2568888887775532 211 111111111211110 1 111111145999997 56777643
Q ss_pred -HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCC
Q psy15051 881 -DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWL 959 (1065)
Q Consensus 881 -~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl 959 (1065)
+++|++++++|++||+||||||||+|+.+.. ..|.+|+|+.....
T Consensus 436 ~~~~r~a~~~~l~~pG~P~iy~G~E~G~~~~~-------------------------~~~~~~~W~~~~~~--------- 481 (617)
T 1m7x_A 436 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREW-------------------------NHDASLDWHLLEGG--------- 481 (617)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCC-------------------------CTTSCCCGGGGCSS---------
T ss_pred HHHHHHHHHHHHHCCCCcEEEcchhcCCCCCC-------------------------CcccccChhhcccc---------
Confidence 4678999999999999999999999999752 13468899864310
Q ss_pred CCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe-----EEEc---cCCcEEEEEEEc-CCcEEEEEEECC
Q psy15051 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY-----KIST---PNNYVFILTRTE-GSTSVYLIINLN 1030 (1065)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~-----~~l~---~~~~viaf~R~~-~~~~vlVv~N~s 1030 (1065)
.....+++++||+|++||+++|+|+.|++ +++. .+++|++|.|.. +++.++||+|++
T Consensus 482 --------------~~~~~~l~~~~~~L~~lR~~~~al~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lvv~N~s 547 (617)
T 1m7x_A 482 --------------DNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFT 547 (617)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHTTCGGGTSCTTSGGGEEEEEEEETTTTEEEEEEECTTCCEEEEEEECS
T ss_pred --------------chhhHHHHHHHHHHHHHHhhCHHhhcCCCCCCCeEEEeccCCCCeEEEEEEEcCCCCEEEEEECCC
Confidence 01235699999999999999999988753 4554 357899999996 468999999999
Q ss_pred CCcEE-EEcCCCccCCCcEEEEEccCCCcC
Q psy15051 1031 SRTET-VDLSDCIENGGDVAIFTSSVNSGL 1059 (1065)
Q Consensus 1031 ~~~~~-v~l~~~~~~~~~~~v~~~s~~~~~ 1059 (1065)
.++++ +.+. ...++.++.+++|+...+
T Consensus 548 ~~~~~~~~i~--~p~~g~~~~~l~sd~~~~ 575 (617)
T 1m7x_A 548 PVPRHDYRFG--INQPGKWREILNTDSMHY 575 (617)
T ss_dssp SCCEEEECCB--CSSCSEEEEEEETTSTGG
T ss_pred CCCccceEEC--CCCCCeEEEEEeCccccc
Confidence 98754 4443 123578899998876554
|
| >4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=445.00 Aligned_cols=305 Identities=22% Similarity=0.290 Sum_probs=221.6
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.++||+++||||||||||+|++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 3 ~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk-~LGvt---------------~I~L~-Pi~~~~~~~~GY- 64 (549)
T 4aie_A 3 SASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLE-KLGID---------------AIWLS-PVYQSPGVDNGY- 64 (549)
T ss_dssp -CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHH-HHTCS---------------EEEEC-CCEECCCTTTTS-
T ss_pred CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHH-HCCCC---------------EEEeC-CCcCCCCCCCCc-
Confidence 3689999999999999999999999999999999999999 99999 66666 888888889999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+|||+
T Consensus 65 -------d~~dy-------~~vdp~~Gt~~dfk~Lv~~aH~~Gi~Vi--------lD~-------V~NHts--------- 106 (549)
T 4aie_A 65 -------DISDY-------EAIDPQYGTMADMDELISKAKEHHIKIV--------MDL-------VVNHTS--------- 106 (549)
T ss_dssp -------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC---------
T ss_pred -------CccCC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CccCCc---------
Confidence 56666 667779999999999997 799999999 887 888876
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhc-
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQAL- 260 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 260 (1065)
.+|+||++...... .++.++| |.+......++++...+
T Consensus 107 -~~~~wf~~~~~~~~---------------------------------------~~~~~~y~~~d~~~~~~~~~~~~~~~ 146 (549)
T 4aie_A 107 -DQHKWFVEAKKGKD---------------------------------------NQYRDYYIWRDPVDEHEPNDLKSAFS 146 (549)
T ss_dssp -TTSHHHHHHTTCTT---------------------------------------STTGGGBCEECCBTTBCSSCCBCTTS
T ss_pred -CCcchhhhhhhccc---------------------------------------ccccccccccCCcccCCCCCcccccC
Confidence 77888876432110 1111122 22211111111111111
Q ss_pred -cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 261 -QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 261 -~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
..+...+..++++++.|. .+|||||++||+|+ +
T Consensus 147 ~~~~~~~~~~~~~~~~~f~-------------------~~~~dln~~np~v~---------------------------~ 180 (549)
T 4aie_A 147 GSAWKYDERSGQYYLHFFA-------------------DQQPDLNWQNTELR---------------------------Q 180 (549)
T ss_dssp SBSEEEETTTTEEEECSSC-------------------TTSCBBCTTCHHHH---------------------------H
T ss_pred CCcccccccCCceEecccC-------------------CCCCccccCCHHHH---------------------------H
Confidence 011111233455589998 89999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||+++||||||+|+|++|+++... ....+.+++|++++.+++.....++..
T Consensus 181 ~i~~~~~~W~e~gvDGfRlD~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (549)
T 4aie_A 181 KIYNMMNFWLDKGIGGFRMDVIELIGKDPDK----------------------NIRENGPMLHPYLQEMNKATFGKRDVM 238 (549)
T ss_dssp HHHHHHHHHHHTTCCEEEETTGGGTTCBGGG----------------------TBCTTCTTHHHHHHHHHHHTTTTTCCE
T ss_pred HHHHHHHHHHHhcCCceeEecHHhccccchh----------------------hhcccccccchHHHhhhhcccccccee
Confidence 8999999999999999999999999985320 124578899999999999888888999
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhH-------------------H-HHHHHHhcC
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ-------------------V-VSHFIYCGI 479 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~-------------------~-~~~~Wq~~m 479 (1065)
+|||......+...++. +....+++|.|+|....+ . ....|+..+
T Consensus 239 ~vgE~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (549)
T 4aie_A 239 TVGETWNATPKIAEEYS---------------DPDRHELSMVFQFENQSLDQQPGKEKWDLKPLDLGELKKVLVKWQTKI 303 (549)
T ss_dssp EEEECTTCCHHHHHHHH---------------CGGGCSCSEEECCGGGGGGBCTTSCTTSBCCCCHHHHHHHHHHHHHSS
T ss_pred eeecccCCCHHHHHHhc---------------CCccccccccccccccccccccccccccccccchHHHHHHHHHhhhhc
Confidence 99998765554333220 111123445555543321 1 567888888
Q ss_pred cCC-cccchhhcccCccccchhhhhhhhh
Q psy15051 480 VDD-TSALMVMNERRLSTIASRTMAAMSL 507 (1065)
Q Consensus 480 ~~~-~~~~~~~~nhd~~r~~sr~~~~~sl 507 (1065)
... ++..++..|||++|..+|++++...
T Consensus 304 ~~~~~~~~~f~~nHD~~r~~s~~~~~~~~ 332 (549)
T 4aie_A 304 DFDHAWNSLFWENHDIPRVISRWGNDQEY 332 (549)
T ss_dssp CTTSCCCEECSCCTTSCCHHHHHSCCSTT
T ss_pred cccccccceeeccCCchhhhhhcCCcHHH
Confidence 744 4555677999999999999987544
|
| >2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=446.20 Aligned_cols=315 Identities=23% Similarity=0.344 Sum_probs=226.5
Q ss_pred hhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
|+||+++||||||||||++++++|+|||+||+++||||| +|||| ++|++ |++.++..+|||
T Consensus 3 ~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~ldyl~-~lGv~---------------~i~l~-Pi~~~~~~~~gY-- 63 (555)
T 2ze0_A 3 KTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLV-ELGVD---------------IVWIC-PIYRSPNADNGY-- 63 (555)
T ss_dssp CCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTC--
T ss_pred hhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHHHHHHH-HcCCC---------------EEEeC-CcccCCCCCCCc--
Confidence 689999999999999999999999999999999999999 99999 66666 888887778999
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 ------~~~dy-------~~id~~~Gt~~d~~~lv~~~h~~Gi~vi--------lD~-------V~NH~~---------- 105 (555)
T 2ze0_A 64 ------DISDY-------YAIMDEFGTMDDFDELLAQAHRRGLKVI--------LDL-------VINHTS---------- 105 (555)
T ss_dssp ------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------ECSBCC----------
T ss_pred ------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc----------
Confidence 66666 667779999999999997 799999999 887 888876
Q ss_pred CccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc-
Q psy15051 184 GQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ- 261 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 261 (1065)
.+|+||++.... +..|+.++| |.+......+++|...++
T Consensus 106 ~~~~~f~~~~~~---------------------------------------~~~~~~~~y~~~~~~~g~~p~~~~~~f~~ 146 (555)
T 2ze0_A 106 DEHPWFIESRSS---------------------------------------RDNPKRDWYIWRDGKDGREPNNWESIFGG 146 (555)
T ss_dssp TTSHHHHHHHHC---------------------------------------SSSTTGGGBCEECCBTTBCSSCEECTTSS
T ss_pred chhhHHHHhhcC---------------------------------------CCCCccccccccCCCCCCCCCcccccCCC
Confidence 677788652100 001111222 111000001111111100
Q ss_pred -ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 262 -RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 262 -~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
.+-..+....+++|.|. ..|||||++||+|| ++
T Consensus 147 ~~w~~~~~~~~~~~~~f~-------------------~~~pdLn~~np~V~---------------------------~~ 180 (555)
T 2ze0_A 147 SAWQYDERTGQYYLHIFD-------------------VKQPDLNWENSEVR---------------------------QA 180 (555)
T ss_dssp BSEEEETTTTEEEECSSC-------------------TTCCBBCTTCHHHH---------------------------HH
T ss_pred ccceecCCCCceeecccC-------------------ccCCccCCCCHHHH---------------------------HH
Confidence 00000112334499998 79999999999997 88
Q ss_pred HHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHH-HHHhhCCcc
Q psy15051 341 LLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRT-LVEKFGNQS 419 (1065)
Q Consensus 341 ~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~-~~d~~~~~~ 419 (1065)
|+++++||+++||||||||||++|.++.+++|+|..+ .+.......++.++|++++++++||+ +.+++ +..
T Consensus 181 l~~~~~~W~~~gvDGfRlDa~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~~-~~~ 252 (555)
T 2ze0_A 181 LYEMVNWWLDKGIDGFRIDAISHIKKKPGLPDLPNPK-------GLKYVPSFAGHMNQPGIMEYLRELKEQTFARY-DIM 252 (555)
T ss_dssp HHHHHHHHHHHTCCEEEEESGGGSSCCTTCCCCC-----------CCSEECHHHHSSCTTHHHHHHHHHHHTGGGS-SCE
T ss_pred HHHHHHHHHHcCCCEEEEccccccccccccccCCccc-------ccccccccccccCcHHHHHHHHHHHHHhhccC-CeE
Confidence 9999999999999999999999999988888877531 01111111246889999999999998 44555 888
Q ss_pred CCCCCCccccc-eeeecccCccccCCCCcccccCCCcccccccccchhhh--------------HH-HHHHHHhcCcCCc
Q psy15051 420 ADRQPSCADKF-AIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLH--------------QV-VSHFIYCGIVDDT 483 (1065)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~--------------~~-~~~~Wq~~m~~~~ 483 (1065)
+|||......+ ...+. +..+.+++|+|||.+.. +. .+.+|+..+...+
T Consensus 253 ~vgE~~~~~~~~~~~y~----------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (555)
T 2ze0_A 253 TVGEANGVTVDEAEQWV----------------GEENGVFNMIFQFEHLGLWERRADGSIDVRRLKRTLTKWQKGLENRG 316 (555)
T ss_dssp EEEECTTCCTTTTHHHH----------------CSSSCSCSEEECCTTCCCCCCCC--CCCHHHHHHHHHHHHHHHTTTC
T ss_pred EEeccCCCCHHHHHHHh----------------ccccccccceeehHHHhhhhccccCCCCHHHHHHHHHHHHhhccCCC
Confidence 99998632222 11111 22345678888887651 11 6788998887667
Q ss_pred ccchhhcccCccccchhhhhhh
Q psy15051 484 SALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 484 ~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
+..++++|||++|.++|++.+.
T Consensus 317 ~~~~fl~NHD~~R~~s~~g~~~ 338 (555)
T 2ze0_A 317 WNALFLENHDLPRSVSTWGNDR 338 (555)
T ss_dssp CBEECSCCTTSCCHHHHTSCSS
T ss_pred ceeeeecCCCCcchhhhhCCch
Confidence 7778889999999999998753
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=439.64 Aligned_cols=363 Identities=17% Similarity=0.205 Sum_probs=264.3
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
|++++|||+|+++|+. .|+|+ ||+++|+|||+||||+||||||++++. .+|||++.||+
T Consensus 134 ~~~~~iYe~~v~~f~~-----~G~~~---------------~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~ 193 (618)
T 3m07_A 134 WEQAVVYEMHTGTFTP-----EGTFR---------------AAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLY 193 (618)
T ss_dssp GGGCCEEEECHHHHSS-----SCSHH---------------HHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEE
T ss_pred hhhCeEEEEehhhcCC-----CCCHH---------------HHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCccccc
Confidence 7899999999999975 48999 999999999999999999999988763 46999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|||+|||++|||+||++|
T Consensus 194 ~~~~~~G~~~~~~~lv~~~------------------------------------------------------------- 212 (618)
T 3m07_A 194 APHSAYGTPDDFKAFIDAA------------------------------------------------------------- 212 (618)
T ss_dssp EECTTTCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred ccCcCcCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccCCCHHHHHHHHHHHH--
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INITSREVMRSQKDVVQ-- 792 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~~n~~v~~~l~~~lk-- 792 (1065)
|++||+||+|+|+||++.+++|+.... ..||... ....|.. +|+.+|+|+++|.++++
T Consensus 213 ----H~~Gi~VilD~V~NH~~~~~~~~~~~~------~~~~~~~---------~~~~wg~~ln~~~p~V~~~i~~~~~~w 273 (618)
T 3m07_A 213 ----HGYGLSVVLDIVLNHFGPEGNYLPLLA------PAFFHKE---------RMTPWGNGIAYDVDAVRRYIIEAPLYW 273 (618)
T ss_dssp ----HHTTCEEEEEECCSCCCSSSCCHHHHC------GGGEEEE---------EEETTEEEECTTSHHHHHHHHHHHHHH
T ss_pred ----HHCCCEEEEeecCccCCCCcccccccC------chhhcCC---------CCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 888899999999999999999987631 2344321 1234554 99999999999998722
Q ss_pred ----------------------------------hcCC--ceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHh
Q psy15051 793 ----------------------------------SFPL--ILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF 836 (1065)
Q Consensus 793 ----------------------------------~~~~--~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~ 836 (1065)
+..| +++++||.|...+..+.. ...+...+++..+++.+...+
T Consensus 274 ~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~v~~~~p~~~~~li~E~~~~~~~~l~~-~~~g~~g~~d~~~n~~~~~~l 352 (618)
T 3m07_A 274 LTEYHLDGLRFDAIDQIEDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPR-DQDGNAPLFTAEWNDDFHNAV 352 (618)
T ss_dssp HHHTTCSEEEETTGGGCCCCSSSCHHHHHHHHHHHHCCSSCCEEEECCSSCCCTTSCC-CTTSCCSSCSEEECHHHHHHH
T ss_pred HHHhCccEEEecchhhhcccchHHHHHHHHHHHHHhCCCCCEEEEEEecCCchhhhcc-cccCCccccceeechhHHHHH
Confidence 1222 489999999874332211 111111237888888776654
Q ss_pred h----cCCC----------hHHHHHHHHHHhhcC-----------------CCCCcccccccCCCh-------hhHhhhc
Q psy15051 837 G----ATSN----------AKDLENVVNAYLKSL-----------------PSGKWSSWMVGGHSI-------TRIATRY 878 (1065)
Q Consensus 837 ~----~~~~----------~~~l~~~l~~~~~~~-----------------~~~~~~~~flenHD~-------~Rl~s~~ 878 (1065)
. +... ...+...+....... ......++|++|||+ .|+.+..
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~f~~~g~~s~~~~~~~G~~~~~~~~~~~v~fl~NHD~~gnr~~G~Rl~~~~ 432 (618)
T 3m07_A 353 HVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNHDQVGNRAQGDRLITLA 432 (618)
T ss_dssp HHHHHCCCSGGGGGGCSCHHHHHHHHHHHSCSCSSCBCTTTSSBCCCCCTTSCGGGEEECSCCHHHHHTSTTCCCHHHHH
T ss_pred HHHhcCCccchhhhcccCcHHHHHHHHHHhhccCcccccccccccCCccccCChhhheeeecccccccccccccchhhhc
Confidence 2 2111 222333333211000 011223459999999 8999988
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCC
Q psy15051 879 SPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958 (1065)
Q Consensus 879 ~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~w 958 (1065)
+.++.+++++++|++||+||||||+|+|+..++..+.++.+ +. ++..|.+|+|+.. +|+. ..
T Consensus 433 ~~~~~~~a~alllt~PG~P~iy~G~E~G~~~pf~~f~d~~~-~l------------~~~vr~gr~~e~~---~f~~--~~ 494 (618)
T 3m07_A 433 GAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHG-DL------------ARAVREGRAKEFA---DHAG--EN 494 (618)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEETTGGGTCCSCCCCCCCCCH-HH------------HHHHHHHHHHTTG---GGTT--CC
T ss_pred CHHHHHHHHHHHHhCCCcCEEecchhhCCCCCccccccCch-hh------------hhhhhccchhhhc---cCCc--cc
Confidence 88999999999999999999999999999988755555543 11 1224556666652 3332 12
Q ss_pred CCCCCCcc-----cccHHH-hhcCCCcHHHHHHHHHHHHHhc--cccc---CCCeEEEccCCcEEEEEEEcCCcEEEEEE
Q psy15051 959 LPVHPNYW-----TLNAQA-EKKTKPSHYSVYKDLTTLRATS--GAVR---MGDYKISTPNNYVFILTRTEGSTSVYLII 1027 (1065)
Q Consensus 959 l~~~~~~~-----~~~~~~-~~~~~~~l~~~~r~Li~LRk~~--paL~---~G~~~~l~~~~~viaf~R~~~~~~vlVv~ 1027 (1065)
++.+.+.+ ..+... +...+.+++++||+|++|||++ |+|+ .|.+..+..++.+++|.|..+++.++||+
T Consensus 495 ~~dP~~~~~~~~~~l~W~~~~~~~~~~ll~~~r~Li~lRr~~~~PaL~~~~~~~~~~~~~~~~vl~~~R~~~~~~llvv~ 574 (618)
T 3m07_A 495 VPDPNAPETFQRSKLNWKQQHSEEGKAWLAFTRELLLLRQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPGGTLSLAL 574 (618)
T ss_dssp CCCTTSHHHHHTTSCCHHHHHSHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSCCEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCCCCChhhcccccCChhhhcccccHHHHHHHHHHHHHHHhccCcccccCCCCceEEEecCCCEEEEEEEeCCCEEEEEE
Confidence 33333332 234422 3344568999999999999999 8897 45677776678899999998888999999
Q ss_pred ECCCCcEEEEc
Q psy15051 1028 NLNSRTETVDL 1038 (1065)
Q Consensus 1028 N~s~~~~~v~l 1038 (1065)
|++++++++++
T Consensus 575 Nls~~~~~v~~ 585 (618)
T 3m07_A 575 NISATTVLLPD 585 (618)
T ss_dssp ECSSSCEECCC
T ss_pred ECCCCCeeccC
Confidence 99999988765
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=442.72 Aligned_cols=371 Identities=20% Similarity=0.241 Sum_probs=254.9
Q ss_pred hhhcccceEEEEecccccCcCCC----CCCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCCC---
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGPN--- 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d----~~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~~--- 624 (1065)
..||+++|||||||++|++++++ ..|+|+ ||+++ |+|||+||||+||||||++++.
T Consensus 168 ~~~~~~~vIYeihv~~f~~~~~~~~~~~~Gt~~---------------gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~ 232 (718)
T 2vr5_A 168 KVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYE---------------GLASEQMISYLKDLGITTVELMPVFHFIDQRF 232 (718)
T ss_dssp CCCTTSCCEEEECTTTTTTTCTTSCTTSTTSHH---------------HHTSHHHHHHHHHHTCCEEEECCCBCBCCCHH
T ss_pred CCChhHCEEEEEEcchhhcCCCCCCcccCcCHH---------------HHhcchhhHHHHHcCCCeEEEeCCEecCcccc
Confidence 46899999999999999986542 468888 99999 9999999999999999999874
Q ss_pred -------CCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccc
Q psy15051 625 -------GDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAI 690 (1065)
Q Consensus 625 -------~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~ 690 (1065)
++|||++.||++|||+||| ++|||+||++|
T Consensus 233 ~~~~g~~~~wGY~~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~------------------------------------ 276 (718)
T 2vr5_A 233 LTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNEL------------------------------------ 276 (718)
T ss_dssp HHTTTCCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHH------------------------------------
T ss_pred ccccCCcCccCcCcccCcccChhhcCCCCCCchHHHHHHHHHHH------------------------------------
Confidence 3699999999999999999 89999999999
Q ss_pred cccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhh-hccCCCCCcceeecCCCCCCCCCC
Q psy15051 691 HSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTP 769 (1065)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~-~~~~~~~~d~y~~~~~~dG~p~~~ 769 (1065)
|++||+||||+|+||++..++|.... ..+ ....+||.+.....+. ...
T Consensus 277 -----------------------------H~~Gi~VilDvV~NH~~~~~~~~~~~~~~~-~~~~~yy~~~~~~~~~-~~~ 325 (718)
T 2vr5_A 277 -----------------------------HNAGIEVIIDVVYNHTAEGNHLGPTLSFRG-IDNTAYYMLQPDNKRY-YLD 325 (718)
T ss_dssp -----------------------------HTTTCEEEEEECCSCCSSCSTTSCCSSHHH-HHSTTTBCBCTTTSSS-BCC
T ss_pred -----------------------------HHCCCEEEEEeccCcccCccccCccccccC-CCCCcceEeCCCCCce-eec
Confidence 88888999999999999888763211 000 0134566544321111 111
Q ss_pred CCCCcc-ccCCCHHHHHHHHHHHHh---------------------c------------------CCceEEEeecCCCCh
Q psy15051 770 PNNWKH-INITSREVMRSQKDVVQS---------------------F------------------PLILMIITEAYSPSL 809 (1065)
Q Consensus 770 ~~~W~~-ln~~n~~v~~~l~~~lk~---------------------~------------------~~~~~ligE~~~~~~ 809 (1065)
..+|.. ||+.+|+|+++|.++++. + .+++++|||.|...+
T Consensus 326 ~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~ 405 (718)
T 2vr5_A 326 FTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLNTFFIALQQDPILSQVKLIAEPWDVGQ 405 (718)
T ss_dssp SSSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTGGGGGBSSSSBCTTCHHHHHHHHCTTGGGSEEEECCBCSST
T ss_pred CCCccCeecCCCHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhhhccCCccchHHHHHHHHhCcccCCcEEEecccccCC
Confidence 122322 999999999999998332 0 125789999997532
Q ss_pred HHHhhhccCCCCccccccccHHHHHHh----hcC-CChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhcC-
Q psy15051 810 EKVAKYYGTGDTQGTHLSVNYEIMNKF----GAT-SNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRYS- 879 (1065)
Q Consensus 810 ~~~~~y~~~~~~~~~d~~~~~~~~~~~----~~~-~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~~- 879 (1065)
.. | ..+........++..+++.+ .+. ....++...+......+. ......+|++|||+.|+.+.+.
T Consensus 406 ~~---~-~~~~f~~~~~~wn~~~r~~~~~f~~g~~~~~~~~~~~l~~~~~~y~~~~~~p~~~vnf~~~HD~~~l~dl~~~ 481 (718)
T 2vr5_A 406 GG---Y-QVGNFPYQWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSHDGFTLEDLVSY 481 (718)
T ss_dssp TC---B-CTTCSCTTEEEECHHHHHHHHHHHHTCCEEHHHHHHHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHSSC
T ss_pred Cc---c-cccCCchhHHHHhHHHHHHHHHHHcCCcchHHHHHHHHhcchhhhcccCCCcceeeeeeecCCCCCHHHHHHH
Confidence 21 1 11100000112444444433 222 234455444432111111 1223456999999987754431
Q ss_pred ---------------------------------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCc
Q psy15051 880 ---------------------------------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDP 920 (1065)
Q Consensus 880 ---------------------------------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp 920 (1065)
.+++|++++++|++||+||||||||+|++... ..+
T Consensus 482 ~~k~~~~~g~~~~dg~~~n~sw~~~~~g~~~~~~~~~~~~~~~r~a~a~ll~~~G~P~iy~GdE~G~~~~G-----~~~- 555 (718)
T 2vr5_A 482 NQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGTPMILGGDELSRTQRG-----NNN- 555 (718)
T ss_dssp SSCCCGGGSSTTCCSCSCCCCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHTTSSSEEEEETTTTTTCCCTT-----CSC-
T ss_pred hhhhhhhcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCcEEEechhhcccCCC-----CCC-
Confidence 23578889999999999999999999998541 011
Q ss_pred cccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 921 EGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 921 ~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
.++++..+.+|+|+... ..++++++||+||+|||++|+|+.|
T Consensus 556 -----------~y~~~~~~~~~~W~~~~---------------------------~~~~l~~~~~~Li~lRk~~pal~~~ 597 (718)
T 2vr5_A 556 -----------AFCQDNEITWFDWNLDE---------------------------RKSKFLEFVKKMIQFYRAHPAFRRE 597 (718)
T ss_dssp -----------CTTCCSTTTSCCCCCCH---------------------------HHHHHHHHHHHHHHHHHHCGGGSCS
T ss_pred -----------cccCCccccccCccccc---------------------------cchHHHHHHHHHHHHHhhCcccccC
Confidence 23455567788888532 1246999999999999999999887
Q ss_pred Ce--------------EEEcc------------CCcEEEEEEEcC-------------CcEEEEEEECCCCcEEEEcCCC
Q psy15051 1001 DY--------------KISTP------------NNYVFILTRTEG-------------STSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 1001 ~~--------------~~l~~------------~~~viaf~R~~~-------------~~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
++ .++.. +.++++|.|... .+.++||+|++.+++++.|+..
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~la~~r~~~~~~~~~~~~~~~~~~~ilv~~N~~~~~~~~~lp~~ 677 (718)
T 2vr5_A 598 RYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSSPTQLVIFVLEGSVMDEINMYGERIADDSFLIILNANPNNVKVKFPKG 677 (718)
T ss_dssp SCCCSSBCTTCSSBSEEEECSSSCBCCTTTTTSEESEEEEEEEGGGCCCBCTTSCBCCCCEEEEEEECCSSCEEEECCSS
T ss_pred cccccccccccCCCceEEECCCCCcCCccccCCCCCEEEEEEeCCccccccccccccCCCeEEEEECCCCCcEEEECCCC
Confidence 64 23321 147999999842 5689999999999999999853
Q ss_pred ccCCCcEEEEEccC
Q psy15051 1042 IENGGDVAIFTSSV 1055 (1065)
Q Consensus 1042 ~~~~~~~~v~~~s~ 1055 (1065)
.. ...+++++++.
T Consensus 678 ~~-g~~w~~l~~t~ 690 (718)
T 2vr5_A 678 KW-ELVISSYLREI 690 (718)
T ss_dssp EE-EEEEESCCSCC
T ss_pred CC-CCeEEEEecCC
Confidence 10 12466666654
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=445.72 Aligned_cols=361 Identities=17% Similarity=0.207 Sum_probs=254.8
Q ss_pred ChhhcccceEEEEecccccCcCCC----CCCCCCCcccchhhhcccccccHHhh--hHHHHHcCcCEEEeCCCCcCCCC-
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLGIIEK--IDYLKELGVETLWLTPFYSGPNG- 625 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d----~~Gdl~g~~~~~~~~~~t~~~Gl~~k--LdYLk~LGvnaI~L~PI~~~~~~- 625 (1065)
+..||+++|||||||++|++++++ +.|+|+ ||+++ |+|||+||||+||||||++++..
T Consensus 144 ~~~~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~---------------gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~ 208 (657)
T 2wsk_A 144 PRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYK---------------ALGHPVMINYLKQLGITALELLPVAQFASEP 208 (657)
T ss_dssp CCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHH---------------HHTSHHHHHHHHHHTCCEEEESCCEEECCCH
T ss_pred CCCCchhcEEEEEEcceeeccCCCCCccCCcCHH---------------HHhcccchHHHHHcCCCEEEECCccccCccc
Confidence 346899999999999999987654 468888 99999 99999999999999999998753
Q ss_pred ---------CCCCcCCCCcccCCCCC-----CHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccc
Q psy15051 626 ---------DIGYDISNHTEVGKDFG-----TMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIH 691 (1065)
Q Consensus 626 ---------~~GY~~~dy~~idp~~G-----t~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~ 691 (1065)
+|||++.||++|+|+|| |++|||+||++|
T Consensus 209 ~~~~~g~~~~wGY~~~~y~~~~~~~G~~p~~~~~d~~~lv~~~------------------------------------- 251 (657)
T 2wsk_A 209 RLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKAL------------------------------------- 251 (657)
T ss_dssp HHHTTTCCCSSCCCEEEEEEECGGGCSSGGGHHHHHHHHHHHH-------------------------------------
T ss_pred cccccccccccCcCcccCCCCCHHHcCCCCcCHHHHHHHHHHH-------------------------------------
Confidence 69999999999999999 589999999999
Q ss_pred ccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhh-hccCCCCCcceeecCCCCCCCCCCC
Q psy15051 692 SVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKS-AQKIDPYTNYYVWKDGLNGKPGTPP 770 (1065)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~-~~~~~~~~d~y~~~~~~dG~p~~~~ 770 (1065)
|++||+||||+|+||++..++|+... ..+. ...+||. ... +|. ....
T Consensus 252 ----------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~-~~~~~y~-~~~-~~~-~~~~ 299 (657)
T 2wsk_A 252 ----------------------------HKAGIEVILDIVLNHSAELDLDGPLFSLRGI-DNRSYYW-IRE-DGD-YHNW 299 (657)
T ss_dssp ----------------------------HHTTCEEEEEECCSCCTTCSTTSBCCSHHHH-HHHHHBC-BCT-TSS-BCCS
T ss_pred ----------------------------HHCCCEEEEEEeecccccccccCccccccCC-CCccceE-ECC-CCC-eeCC
Confidence 88889999999999999999885321 1110 0134553 221 221 1111
Q ss_pred CCCcc-ccCCCHHHHHHHHHHHHh-----------------------c---------------CCceEEEeecCCCChHH
Q psy15051 771 NNWKH-INITSREVMRSQKDVVQS-----------------------F---------------PLILMIITEAYSPSLEK 811 (1065)
Q Consensus 771 ~~W~~-ln~~n~~v~~~l~~~lk~-----------------------~---------------~~~~~ligE~~~~~~~~ 811 (1065)
.+|.. ||+.+|+|+++|.++++. + .+++++|||.|...+.
T Consensus 300 ~~~~~~ln~~~p~v~~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~liaE~w~~~~~- 378 (657)
T 2wsk_A 300 TGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPG- 378 (657)
T ss_dssp SSSSCCBCTTSHHHHHHHHHHHHHHHHTTCCCEEEETTTHHHHBSSSBCTTCHHHHHHHHCTTGGGSEEEECCBCSSTT-
T ss_pred CCcCCcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccccccccccchhHHHHHHHHhCcccCCcEEEEccccCCCC-
Confidence 22222 999999999999998322 1 1257899999875322
Q ss_pred HhhhccCCCCccccccccHHHHHHh----hc-CCChHHHHHHHHHHhhcCC----CCCcccccccCCChhhHhhhc----
Q psy15051 812 VAKYYGTGDTQGTHLSVNYEIMNKF----GA-TSNAKDLENVVNAYLKSLP----SGKWSSWMVGGHSITRIATRY---- 878 (1065)
Q Consensus 812 ~~~y~~~~~~~~~d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~~----~~~~~~~flenHD~~Rl~s~~---- 878 (1065)
.| +.+........++..+++.+ .+ .....++...+......+. ......+|++|||+.|+....
T Consensus 379 --~~-~~~~f~~~~~~~n~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~nf~~~HD~~~l~dl~~~~~ 455 (657)
T 2wsk_A 379 --GY-QVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNH 455 (657)
T ss_dssp --CB-CTTCSCTTEEEEEHHHHHHHHHHHHTSCSCHHHHHHHHBTTHHHHSSTTCCGGGEEECSCCSSSCCHHHHTTCSS
T ss_pred --cc-cccCCCccHHHHhHHHHHHHHHHhccCCchHHHHHHHHhcchhhhccCCCCccceeehhhcCCCCcHHHHHHHHh
Confidence 11 11110101123455554443 22 3445555554432221121 122344699999997765432
Q ss_pred ------------------------------------CHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccc
Q psy15051 879 ------------------------------------SPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEG 922 (1065)
Q Consensus 879 ------------------------------------~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~ 922 (1065)
..+++|++++++|++||+||||||||+|+++.. .
T Consensus 456 ~~~~~~g~~~~~g~~~~~s~n~~~~g~~~~~~~~~~~~~~~r~~~a~ll~~~G~P~iy~GdE~G~~~~g-------~--- 525 (657)
T 2wsk_A 456 KHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHG-------N--- 525 (657)
T ss_dssp CCCGGGSSTTCSSCSCCCCCCTTSSSSCCCHHHHHHHHHHHHHHHHHHHHSBSEEEEETTTTTTCCCTT-------C---
T ss_pred hhhhhccccccCCcccccccccccccCCCchhHHHHHHHHHHHHHHHHHHcccCCEEEechhhccccCC-------C---
Confidence 023578899999999999999999999999642 0
Q ss_pred cccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe
Q psy15051 923 YIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002 (1065)
Q Consensus 923 ~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~ 1002 (1065)
.+.++|+..+.+|+|+.. +.+++++||+||+|||++|+|+.|++
T Consensus 526 -------~~~y~~d~~~~~~~W~~~-----------------------------~~~l~~~~~~Li~lRk~~pal~~g~~ 569 (657)
T 2wsk_A 526 -------NNAYCQDNQLTWLDWSQA-----------------------------SSGLTAFTAALIHLRKRIPALVENRW 569 (657)
T ss_dssp -------SCCTTCCSTTTSCCGGGC-----------------------------CHHHHHHHHHHHHHHTTCHHHHSCCC
T ss_pred -------CCccccCCccCccCcccc-----------------------------cHHHHHHHHHHHHHHhhCcccccCcc
Confidence 012356667888998752 24699999999999999999998875
Q ss_pred E--------EEccC------------CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEE--EEccC
Q psy15051 1003 K--------ISTPN------------NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAI--FTSSV 1055 (1065)
Q Consensus 1003 ~--------~l~~~------------~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v--~~~s~ 1055 (1065)
. ++..+ .++++|.|. +.++||+|++.+++++.|+. +.+++ ++++.
T Consensus 570 ~~~~~~~v~~~~~~g~~~~~~~w~~~~~~la~~r~---~~~lv~~N~s~~~~~~~lp~-----g~~~~~~l~~~~ 636 (657)
T 2wsk_A 570 WEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLS---DRFLIAINATLEVTEIVLPA-----GEWHAIPPFAGE 636 (657)
T ss_dssp CCTTSSSEEEECTTSSBCCHHHHHHSCSEEEEEET---TTEEEEEECSSSCEEEECCS-----SCCEECTTSSCT
T ss_pred cccCCCceEEEcCCCcccccccccCCCceEEEEEc---CCEEEEEcCCCCceEEEcCC-----CceEEEEEecCC
Confidence 3 33333 569999995 67999999999999999874 45666 55554
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=459.78 Aligned_cols=392 Identities=15% Similarity=0.166 Sum_probs=256.9
Q ss_pred cccc---eEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcC------C---
Q psy15051 557 WKNT---VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSG------P--- 623 (1065)
Q Consensus 557 w~~~---vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~------~--- 623 (1065)
|++. ||||+|+|+|+++++++.++++ |+|.|.+.- ..++++|+|||+||||+||||||+++ +
T Consensus 418 ~~~~~~~vIYE~hvr~ft~~~~~~~~~~~-----Gt~~g~~e~~~~~i~~L~~L~~lGvt~i~LlPv~~~~~v~e~~~~~ 492 (1083)
T 2fhf_A 418 KADLAKMTIHESHIRDLSAWDQTVPAELR-----GKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKV 492 (1083)
T ss_dssp HHHHHTCEEEEECHHHHHTTCTTSCGGGT-----TSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGC
T ss_pred cccccccEEEEEecchhcCCCCCCCcCCC-----CChhhhhhhhhhhHHHHHHHHhcCCCEEEECCcccccccccccccc
Confidence 4455 9999999999988877652222 333333210 01345799999999999999999963 1
Q ss_pred -------------------------------------------------------------CCCCCCcCCCCcccCCCCC
Q psy15051 624 -------------------------------------------------------------NGDIGYDISNHTEVGKDFG 642 (1065)
Q Consensus 624 -------------------------------------------------------------~~~~GY~~~dy~~idp~~G 642 (1065)
+.+|||++.|||+|+|+||
T Consensus 493 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~~~yG 572 (1083)
T 2fhf_A 493 ADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYA 572 (1083)
T ss_dssp CCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTS
T ss_pred cccccccccccccccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcChhhc
Confidence 1139999999999999999
Q ss_pred C-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 643 T-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 643 t-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
| ++|||+||++|
T Consensus 573 t~p~~~~r~~efk~LV~~~------------------------------------------------------------- 591 (1083)
T 2fhf_A 573 TDPEGTARIKEFRTMIQAI------------------------------------------------------------- 591 (1083)
T ss_dssp SCCSTTHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred CCCCccccHHHHHHHHHHH-------------------------------------------------------------
Confidence 9 89999999999
Q ss_pred hhhhhhc-CcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHHH---
Q psy15051 716 ESMEHRA-GMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVV--- 791 (1065)
Q Consensus 716 ~~~~H~~-Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~l--- 791 (1065)
|++ ||+||||+|+||++..++||....- +...++||++....+|. .....+|..+|+.+|+|+++|.+++
T Consensus 592 ----H~~~GI~VILDvV~NHt~~~~~~~~~~~~-d~~~p~yy~~~~p~~g~-~~~~tg~~dln~~~p~Vr~~i~d~l~~W 665 (1083)
T 2fhf_A 592 ----KQDLGMNVIMDVVYNHTNAAGPTDRTSVL-DKIVPWYYQRLNETTGS-VESATCCSDSAPEHRMFAKLIADSLAVW 665 (1083)
T ss_dssp ----HHTSCCEEEEEECTTEESCCSSSCTTCCH-HHHSTTTSBCBCTTTCC-BCCTTSSEEBCTTSHHHHHHHHHHHHHH
T ss_pred ----HhhcCCEEEEEeccccCcCCCccchhccc-cCCCCCceeecCCCCCc-eecCCccCCcCcCCHHHHHHHHHHHHHH
Confidence 877 9999999999999999988763211 11134677665433454 1223455559999999999999982
Q ss_pred -----------------------------HhcCCceEEEeecCCCChHH-HhhhccCCC-CccccccccHHHHHHhhcC-
Q psy15051 792 -----------------------------QSFPLILMIITEAYSPSLEK-VAKYYGTGD-TQGTHLSVNYEIMNKFGAT- 839 (1065)
Q Consensus 792 -----------------------------k~~~~~~~ligE~~~~~~~~-~~~y~~~~~-~~~~d~~~~~~~~~~~~~~- 839 (1065)
++..|++++|||.|...... ....++... ..++ ..|+..+++.+...
T Consensus 666 ~~e~gVDGfR~D~a~~~~~~~~~~~~~~l~~~~p~~~ligE~w~~~~~~~~~~a~q~~~~g~~i-g~fnd~~Rd~vr~~~ 744 (1083)
T 2fhf_A 666 TTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGI-GTFSDRLRDAVRGGG 744 (1083)
T ss_dssp HHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCSCTTTSCBCCTTTTTTSSC-EEECHHHHHHHHCSC
T ss_pred HHHhCCcEEEEeCcccCCHHHHHHHHHHHHHhCCCeEEEEeeccCccccchhhhhhhhccCCch-hhhhHHHHHHHhccC
Confidence 22456899999999863210 000011000 0111 23566666655431
Q ss_pred -CC--------------------------hHHHH---HHHHHHhh-c--------------------C--------CCCC
Q psy15051 840 -SN--------------------------AKDLE---NVVNAYLK-S--------------------L--------PSGK 860 (1065)
Q Consensus 840 -~~--------------------------~~~l~---~~l~~~~~-~--------------------~--------~~~~ 860 (1065)
.. ...+. ..+...+. . + ....
T Consensus 745 ~F~~g~~l~~~~gf~~G~~~~p~~~~~~~a~rl~~~~d~~~~~~~g~l~~f~~~~~~g~~l~gs~~~y~~~~~~~~~~p~ 824 (1083)
T 2fhf_A 745 PFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVKRGSEIDYNGAPGGYAADPT 824 (1083)
T ss_dssp TTCCTTHHHHCCCGGGTTTTSCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTSCEEEGGGSEETTEESCCBSSGG
T ss_pred ccccccccccccceeeccccccccchHHHHHHhhchhhhhhhhhhhhhhhhhhccccccccccchhhhcccccccccCcc
Confidence 10 01111 11110000 0 1 1122
Q ss_pred cccccccCCChhhHhhhcC------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccc
Q psy15051 861 WSSWMVGGHSITRIATRYS------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKD 928 (1065)
Q Consensus 861 ~~~~flenHD~~Rl~s~~~------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~ 928 (1065)
..++|++|||+.|+.+.+. .+++|++++++|++||+||||||||+|+++... .+
T Consensus 825 ~~infl~nHD~~rL~D~vs~~~~~~~~~~~r~r~~kla~alLlts~GiP~IY~GdEiG~t~~gn-----~n--------- 890 (1083)
T 2fhf_A 825 EVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFT-----RD--------- 890 (1083)
T ss_dssp GEEECSCCSSSSCHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCTTC-----SC---------
T ss_pred ceeeeeccCCcchhhhhhhhhcCCccchHHHHHHHHHHHHHHHHCCCCcEEEeehhcCCcCCcc-----cC---------
Confidence 4567999999999876542 135788999999999999999999999997420 11
Q ss_pred cccccccCCCCCcCCCCcccccCCCCC--------CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 929 NYLKVCRDGSRVPFQWNDQENAGFSKA--------KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 929 ~~~~~~rd~~R~~m~W~~~~~~gFs~~--------~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
.++++..+.+|+|....++ |+.. .+|.....+ ...+++.|..+.++++++||+||+|||++|+|+.|
T Consensus 891 ---~Y~~~d~~n~~dW~~~dN~-ws~g~p~~~~~~~~W~~~~~~-~~~nv~~q~~d~~sl~~f~r~LI~LRk~~paLr~g 965 (1083)
T 2fhf_A 891 ---SYDSGDWFNRVDYSLQDNN-YNVGMPRSSDDGSNYDIIARV-KDAVATPGETELKQMTAFYQELTALRKSSPLFTLG 965 (1083)
T ss_dssp ---CTTSHHHHHCCCTTCSCCS-CSSSCCCHHHHGGGHHHHHHH-TTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGGGCC
T ss_pred ---ccccccccccccccccCcc-ccccccccccccCCchhcccc-ccccccccccCHHHHHHHHHHHHHHHhhCHHhcCC
Confidence 1122223457888754443 5432 234222111 12233223333467999999999999999999999
Q ss_pred Ce-------EEEccC----CcEEEEEEEcC----------CcEEEEEEECCCCcEEEEcCC
Q psy15051 1001 DY-------KISTPN----NYVFILTRTEG----------STSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1001 ~~-------~~l~~~----~~viaf~R~~~----------~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
++ .++..+ +++++|.|..+ .+.+|||+|++.+++++.|+.
T Consensus 966 ~~~~i~~~v~~~~~~~~~~~~vlaf~R~~~~~~~~~~d~~~~~llVv~N~s~~~~~~~Lp~ 1026 (1083)
T 2fhf_A 966 DGATVMKRVDFRNTGADQQTGLLVMTIDDGMQAGASLDSRVDGIVVAINAAPESRTLQDFA 1026 (1083)
T ss_dssp CHHHHHHHEEEESCSTTCCTTEEEEEEECSTTTSSCSCTTEEEEEEEEECSSSCEEECTTS
T ss_pred ccccccceEEEecCCCCCCCCEEEEEEcCCCccccccCCCCCEEEEEEeCCCCCEEEEcCC
Confidence 84 444443 67999999864 478999999999999998874
|
| >2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=443.26 Aligned_cols=295 Identities=20% Similarity=0.297 Sum_probs=218.3
Q ss_pred hhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
|+||+++||||||||||++++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 3 ~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~-~LGv~---------------~I~l~-Pi~~~~~~~~GY-- 63 (543)
T 2zic_A 3 KHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQ-KLGVM---------------AIWLS-PVYDSPMDDNGY-- 63 (543)
T ss_dssp CCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HHTCS---------------EEEEC-CCEECCCTTTTS--
T ss_pred ccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHHHHHHH-HcCCC---------------EEEEC-CcccCCCCCCCC--
Confidence 689999999999999999999999999999999999999 99999 66666 888888778999
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 ------~~~dy-------~~idp~~Gt~~df~~lv~~~h~~Gi~Vi--------lD~-------V~NH~s---------- 105 (543)
T 2zic_A 64 ------DIANY-------EAIADIFGNMADMDNLLTQAKMRGIKII--------MDL-------VVNHTS---------- 105 (543)
T ss_dssp ------SCSEE-------EEECGGGCCHHHHHHHHHHHHTTTCEEE--------EEE-------CCSBCC----------
T ss_pred ------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------ecCccc----------
Confidence 66666 677779999999999997 799999999 888 999976
Q ss_pred CccccccCCC----cceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhh
Q psy15051 184 GQNFLFQGRP----VNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQA 259 (1065)
Q Consensus 184 ~~~~~f~~~~----~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1065)
.+|+||++.. ..+.+|+.++. + |+ .| ...+.| ..|.. ...
T Consensus 106 ~~~~~f~~~~~~~~~~y~d~y~~~~-~--p~------~~-----------~~~f~~----------~~w~~------~~~ 149 (543)
T 2zic_A 106 DEHAWFIEAREHPDSSERDYYIWCD-Q--PN------DL-----------ESIFGG----------SAWQY------DDK 149 (543)
T ss_dssp TTSHHHHHHHHCTTSGGGGGBCEES-S--CC------SC-----------BCTTSS----------BSEEE------ETT
T ss_pred ccchhhHhhhcCCCCCCcceeecCC-C--CC------cc-----------cccCCC----------CCCcc------cCC
Confidence 6778886531 11222222111 0 00 00 000000 00000 011
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 260 LQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 260 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
.++|| +|.|. ..|||||++||+|| +
T Consensus 150 ~~~~y---------~~~f~-------------------~~~pdLN~~np~Vr---------------------------~ 174 (543)
T 2zic_A 150 SDQYY---------LHFFS-------------------KKQPDLNWENANLR---------------------------Q 174 (543)
T ss_dssp TTEEE---------ECSSC-------------------TTSCBBCTTCHHHH---------------------------H
T ss_pred CCcEE---------ECccc-------------------CCCCccCcCCHHHH---------------------------H
Confidence 23444 99998 79999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||+++||||||+|||++|.+ ++++|. |.++|++|++++++|+.+...++..
T Consensus 175 ~i~~~~~~Wl~~GvDGfRlDa~~~i~~---~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~~~ 232 (543)
T 2zic_A 175 KIYDMMNFWIDKGIGGFRMDVIDMIGK---IPAQHI-------------------VSNGPKLHAYLKEMNAASFGQHDLL 232 (543)
T ss_dssp HHHHHHHHHHTTTCCEEEETTGGGTTC---BGGGTB-------------------CSSCTTHHHHHHHHHHHTGGGSCCE
T ss_pred HHHHHHHHHHhcCCCEEEECCccceee---cCCCcc-------------------ccccHHHHHHHHHHHHHHhccCCeE
Confidence 899999999999999999999999988 443321 5789999999999988665567899
Q ss_pred CCCCCCccccc-eeeecccCccccCCCCcccccCCCcccccccccchhhhH--------------------H-HHHHHHh
Q psy15051 420 ADRQPSCADKF-AIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQ--------------------V-VSHFIYC 477 (1065)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~--------------------~-~~~~Wq~ 477 (1065)
+|||......+ ...+. +.++.+++|+|+|.+..+ . .+..|+.
T Consensus 233 ~vgE~~~~~~~~~~~y~----------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 296 (543)
T 2zic_A 233 TVGETWGATPEIAKQYS----------------NPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQT 296 (543)
T ss_dssp EEEECTTCCHHHHHHHH----------------CGGGCSCSEEECCTTGGGGBCTTSCTTSBCSSCCHHHHHHHHHHHHH
T ss_pred EEeeecCCCHHHHHHHh----------------CCCCCccceEecchhhccccccccccccccCCCCHHHHHHHHHHHHH
Confidence 99998533222 11111 112245667777764421 1 5677888
Q ss_pred cCc-CCcccchhhcccCccccchhhhhhh
Q psy15051 478 GIV-DDTSALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 478 ~m~-~~~~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
.++ ..++..++..|||++|..+|++.+.
T Consensus 297 ~~~~~~~~~~~f~~nHD~~R~~~~~~~~~ 325 (543)
T 2zic_A 297 ELELGQGWNSLFWNNHDLPRVLSIWGNTG 325 (543)
T ss_dssp HSCTTTCCCEECSCCTTSCCHHHHTSCSS
T ss_pred hcccCCCeeeeeecCCCCccchhhcCCch
Confidence 887 5566667889999999999998754
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=431.29 Aligned_cols=376 Identities=19% Similarity=0.305 Sum_probs=251.3
Q ss_pred hhcccceEEEEecccccCcCC------CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-----
Q psy15051 555 EWWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP----- 623 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F~d~~~------d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~----- 623 (1065)
.+|+++|||||||++|+.... ...|+|+ ||+++|+|||+||||+||||||++++
T Consensus 147 ~~~~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~---------------gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~ 211 (714)
T 2ya0_A 147 KTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFE---------------AFIEKLDYLKDLGVTHIQLLPVLSYYFVNEL 211 (714)
T ss_dssp SSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHH---------------HHHTTHHHHHHHTCSEEEESCCBCBSSCBGG
T ss_pred CCccccEEEEEEehhhccCCCCccccccCCcCHH---------------HHHHHhHHHHHcCCCEEEECCcccccccCcc
Confidence 358899999999999985321 1247777 99999999999999999999999841
Q ss_pred -------------CC-CCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhh
Q psy15051 624 -------------NG-DIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMY 681 (1065)
Q Consensus 624 -------------~~-~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~ 681 (1065)
.. .|||++.|||+|+++||+ ++|||+||++|
T Consensus 212 ~~~~~~~~~~~~~~~~~wGY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~--------------------------- 264 (714)
T 2ya0_A 212 KNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEI--------------------------- 264 (714)
T ss_dssp GTTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHH---------------------------
T ss_pred cccccccccccCcCcCccCCCCccCcccChhhccCCCCccchHHHHHHHHHHH---------------------------
Confidence 12 399999999999999998 79999999999
Q ss_pred hhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCC
Q psy15051 682 AICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDG 761 (1065)
Q Consensus 682 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~ 761 (1065)
|++||+||||+|+||++..+.|... .++||.+...
T Consensus 265 --------------------------------------H~~Gi~VilDvV~NH~~~~~~~~~~-------~~~yy~~~~~ 299 (714)
T 2ya0_A 265 --------------------------------------HKRGMGAILDVVYNHTAKVDLFEDL-------EPNYYHFMDA 299 (714)
T ss_dssp --------------------------------------HHTTCEEEEEECTTBCSCHHHHHTT-------STTTSBCBCT
T ss_pred --------------------------------------HHCCCEEEEEeccCcccCccccccc-------CCCeeEEeCC
Confidence 8888888899999999987754221 3467765432
Q ss_pred CCCCCCCCCCCCcc--ccCCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCC
Q psy15051 762 LNGKPGTPPNNWKH--INITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSP 807 (1065)
Q Consensus 762 ~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~ 807 (1065)
+|. +..+|.. +|+.+++|+++|.++++ +..|++++|||.|..
T Consensus 300 -~g~---~~~~~~~~~l~~~~~~v~~~i~d~l~~W~~e~~vDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w~~ 375 (714)
T 2ya0_A 300 -DGT---PRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGWRT 375 (714)
T ss_dssp -TCC---BCEETTEEBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred -CCC---CccccCCCCcccCCHHHHHHHHHHHHHHHHhhCceEEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEEeccccc
Confidence 333 1223433 89999999999888722 235689999999974
Q ss_pred ChHHH--------hhhccCCCCccccccccHHHHHHhhcCC-----------ChHHHHHHHHHHhhc---C--CCCCccc
Q psy15051 808 SLEKV--------AKYYGTGDTQGTHLSVNYEIMNKFGATS-----------NAKDLENVVNAYLKS---L--PSGKWSS 863 (1065)
Q Consensus 808 ~~~~~--------~~y~~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~~~---~--~~~~~~~ 863 (1065)
..... ..+... ......|+..+++.+++.. ....+.......... + ......+
T Consensus 376 ~~g~~~~~~~~~~~~~~~~---~~~~~~f~d~~r~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~p~~~v 452 (714)
T 2ya0_A 376 YAGDENMPTKAADQDWMKH---TDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVI 452 (714)
T ss_dssp CCCSTTCCCCBSSGGGGGG---CSSSEEECHHHHHHHHCCSSSTTCCCTTTTCCEEHHHHHHHHTTCCTTSCCSSGGGEE
T ss_pred ccCcccccccccchhHHhc---CCCccccchHHHHHHhccCCcccchhhhcCCcccHHHHHHHHhcCccccCCCCHHHHh
Confidence 11000 001100 0112357778888775421 111233333332211 1 1112345
Q ss_pred ccccCCChhhHhhhcC----------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccc
Q psy15051 864 WMVGGHSITRIATRYS----------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGK 927 (1065)
Q Consensus 864 ~flenHD~~Rl~s~~~----------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~ 927 (1065)
+|++|||+.|+.++++ .++.+++++++|++||+||||||||+|+++.. .||.
T Consensus 453 nfv~nHD~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~la~~lll~~~G~P~i~~GdE~g~~~~~------~d~~------ 520 (714)
T 2ya0_A 453 QYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQF------RNPA------ 520 (714)
T ss_dssp ECSCCSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHSSSEEEEETTTTTTCCCBC------CCGG------
T ss_pred hHHHhCCCcchhhhhhhhcccCcccccchHHHHHHHHHHHHHHHHCCCCcEEEechhhcccCCC------CCch------
Confidence 6999999999866431 13678889999999999999999999999753 2332
Q ss_pred ccccccccCCCCCcCCCCcccc--------------------cCCCCC--CCCCCCCCCcccccHHHhh-----cCCCcH
Q psy15051 928 DNYLKVCRDGSRVPFQWNDQEN--------------------AGFSKA--KSWLPVHPNYWTLNAQAEK-----KTKPSH 980 (1065)
Q Consensus 928 ~~~~~~~rd~~R~~m~W~~~~~--------------------~gFs~~--~~wl~~~~~~~~~~~~~~~-----~~~~~l 980 (1065)
.|.+|.|+.... ..+... ..| ++..... ....++
T Consensus 521 ----------~~~~~~~gr~~e~~~~~~~~~g~~f~~p~~~~d~~~~~~~~~~---------ldW~~~~~~~~~~~~~~l 581 (714)
T 2ya0_A 521 ----------YRTPVAEDKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNK---------FDWTKATDGKAYPENVKS 581 (714)
T ss_dssp ----------GSSCCCGGGCCTTEEEEECTTCCEEEEEEEESCCTTCCHHHHC---------CCHHHHHCTTTCHHHHHH
T ss_pred ----------hhhccccccccchhhhhhhccccccccccccccccCCCCccee---------ccCCcccccccccchHHH
Confidence 233444432110 000000 000 1111111 123579
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEE-------c--------cCCcEEEEEEEc-CCcEEEEEEECCCCcEEEEcCCCccC
Q psy15051 981 YSVYKDLTTLRATSGAVRMGDYKIS-------T--------PNNYVFILTRTE-GSTSVYLIINLNSRTETVDLSDCIEN 1044 (1065)
Q Consensus 981 ~~~~r~Li~LRk~~paL~~G~~~~l-------~--------~~~~viaf~R~~-~~~~vlVv~N~s~~~~~v~l~~~~~~ 1044 (1065)
+++||+||+|||++|+|+.|++..+ . .++.+++|.|.. .++.++||+|++.++++++|+.....
T Consensus 582 ~~~~~~Li~lRk~~p~l~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~V~~N~~~~~~~~~lp~~~~~ 661 (714)
T 2ya0_A 582 RDYMKGLIALRQSTDAFRLKSLQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADEKAREFNLGTAFAH 661 (714)
T ss_dssp HHHHHHHHHHHHTCGGGGCSSHHHHHHHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSSSCEEEECTTTTGG
T ss_pred HHHHHHHHHHHhhChhhcCCchhhhcCceEEECCCCCCCCCCCCcEEEEEEeCCCCCEEEEEECCCCCcEEEECCCCccC
Confidence 9999999999999999999986432 1 123699999984 45789999999999999999864222
Q ss_pred CCcEEEEEccC
Q psy15051 1045 GGDVAIFTSSV 1055 (1065)
Q Consensus 1045 ~~~~~v~~~s~ 1055 (1065)
...+++++++.
T Consensus 662 ~~~~~~~~d~~ 672 (714)
T 2ya0_A 662 LRNAEVLADEN 672 (714)
T ss_dssp GGGCEEEECSS
T ss_pred CcceEEEEeCC
Confidence 24567777654
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=424.90 Aligned_cols=367 Identities=19% Similarity=0.199 Sum_probs=252.8
Q ss_pred hhhcccceEEEEecccccCcCCC----CCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-----
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN----- 624 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d----~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~----- 624 (1065)
..||++++||||||++|++++++ ..|+|+ ||+++|+|||+||||+||||||++++.
T Consensus 173 ~~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~---------------gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~ 237 (750)
T 1bf2_A 173 TRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYY---------------GAGLKASYLASLGVTAVEFLPVQETQNDANDV 237 (750)
T ss_dssp CCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHH---------------HHHHTHHHHHHHTCCEEEESCCBCBSCTTTTS
T ss_pred CCCccccEEEEEEhhHhhCcCCCCCccCCcCHH---------------HHHHHHHHHHHcCCCEEEECCcccCccccccc
Confidence 35789999999999999986543 357777 999999999999999999999999864
Q ss_pred --------CCCCCcCCCCcccCCCCCC-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccc
Q psy15051 625 --------GDIGYDISNHTEVGKDFGT-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFA 689 (1065)
Q Consensus 625 --------~~~GY~~~dy~~idp~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~ 689 (1065)
++|||++.||++|+|+||| ++|||+||++|
T Consensus 238 ~~~~~g~~~~wGY~~~dy~~~~~~yGt~~~~~~~~~efk~lV~~~----------------------------------- 282 (750)
T 1bf2_A 238 VPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAF----------------------------------- 282 (750)
T ss_dssp STTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHH-----------------------------------
T ss_pred cccccccccccCcCcccccccCccccCCCCCccHHHHHHHHHHHH-----------------------------------
Confidence 4699999999999999999 99999999999
Q ss_pred ccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCC--------CcceeecCC
Q psy15051 690 IHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPY--------TNYYVWKDG 761 (1065)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~--------~d~y~~~~~ 761 (1065)
|++||+||||+|+||++..++|+.... ...+. ..||.....
T Consensus 283 ------------------------------H~~Gi~VilDvV~NH~~~~~~~~~~d~-~~~p~~~~~~~d~~~~y~~~~~ 331 (750)
T 1bf2_A 283 ------------------------------HNAGIKVYMDVVYNHTAEGGTWTSSDP-TTATIYSWRGLDNATYYELTSG 331 (750)
T ss_dssp ------------------------------HHTTCEEEEEECCSSCTTCSBSSSSCS-SCBBCSSHHHHHHHHHBCBCTT
T ss_pred ------------------------------HHCCCEEEEEEecccccCccccccccc-ccCCCcccccCCCCcceEECCC
Confidence 888888888888888888887762100 00000 123322211
Q ss_pred CCCCCCCCCCCCc-cccCCCHHHHHHHHHHHHh---------------------c-------------------------
Q psy15051 762 LNGKPGTPPNNWK-HINITSREVMRSQKDVVQS---------------------F------------------------- 794 (1065)
Q Consensus 762 ~dG~p~~~~~~W~-~ln~~n~~v~~~l~~~lk~---------------------~------------------------- 794 (1065)
.+. .....++. .||+.+|+|+++|.++++. +
T Consensus 332 -~~~-~~~~~g~~~~ln~~~p~V~~~i~d~l~~W~~e~gvDGfR~D~a~~l~~~f~~~~~~~~~~~~~~g~~~~~~~~~~ 409 (750)
T 1bf2_A 332 -NQY-FYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSN 409 (750)
T ss_dssp -SSS-BCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCCBCTTCTT
T ss_pred -CCc-eecCCCcCCccccCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhcCchhhhcccccccccccccccccccccch
Confidence 111 00111221 2999999999999998321 0
Q ss_pred ---------------C--CceEEEeecCCCChHHHhhhccCCCCcccc---ccccHHHHHH----hhc----CCChHHHH
Q psy15051 795 ---------------P--LILMIITEAYSPSLEKVAKYYGTGDTQGTH---LSVNYEIMNK----FGA----TSNAKDLE 846 (1065)
Q Consensus 795 ---------------~--~~~~ligE~~~~~~~~~~~y~~~~~~~~~d---~~~~~~~~~~----~~~----~~~~~~l~ 846 (1065)
. +++++|||.|...+. .+ +. ..++ ..++..+++. +.+ .....++.
T Consensus 410 ~~~~~~i~~~~~~~~~~g~~~~liaE~w~~~~~---~~-~~---~~F~~~~~~wn~~~rd~l~~f~~g~~~~~~~~~~l~ 482 (750)
T 1bf2_A 410 VAINRILREFTVRPAAGGSGLDLFAEPWAIGGN---SY-QL---GGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDA 482 (750)
T ss_dssp SHHHHHHHHSCBCCTTCCSSBEEEECCCCSSTT---CC-CT---TCSCTTCEEECHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHhCcchhhccCCCceEEeccccCCcc---ch-hh---ccCCccHHHHhHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 0 346899999876321 11 11 1122 2344444443 333 34556666
Q ss_pred HHHHHHhhcC----CCCCcccccccCCChhhHhhhcC---------------------------------------HHHH
Q psy15051 847 NVVNAYLKSL----PSGKWSSWMVGGHSITRIATRYS---------------------------------------PDLV 883 (1065)
Q Consensus 847 ~~l~~~~~~~----~~~~~~~~flenHD~~Rl~s~~~---------------------------------------~~~~ 883 (1065)
..+......+ ......++|++|||+.|+.+.+. .++.
T Consensus 483 ~~l~~~~~~y~~~~~~p~~~vnfv~nHD~~~l~dl~s~~~~~n~~~~~~G~n~dG~~~n~s~n~g~~g~t~~~~~r~~~~ 562 (750)
T 1bf2_A 483 NDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAA 562 (750)
T ss_dssp HHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHHHHHHHH
T ss_pred HHhhcchhhhccCCCCcceEEEEeecCCCCcHHHHHhhhcccchhhhhccCCCCCccccccccccccCCchhhHHHHHHH
Confidence 5554311111 12233456999999998865331 1257
Q ss_pred HHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCC
Q psy15051 884 DAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHP 963 (1065)
Q Consensus 884 kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~ 963 (1065)
|++++++|++||+||||||||+|++... + .+.++++.....++|+...
T Consensus 563 r~a~a~ll~~~G~P~i~~GdE~g~t~~G-------~----------~n~y~~~~~i~~~dW~~~~--------------- 610 (750)
T 1bf2_A 563 RTGMAFEMLSAGTPLMQGGDEYLRTLQC-------N----------NNAYNLDSSANWLTYSWTT--------------- 610 (750)
T ss_dssp HHHHHHHHHSSSEEEEETTGGGTCCCTT-------C----------SCCTTCCSTTTSCCCCCCH---------------
T ss_pred HHHHHHHHHcCCcceeeechhhccCCCC-------C----------CCcccCCCcccccCCCccc---------------
Confidence 8899999999999999999999998532 0 0122344445567777521
Q ss_pred CcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe------EEEc-------------cCCcEEEEEEEc----CC
Q psy15051 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY------KIST-------------PNNYVFILTRTE----GS 1020 (1065)
Q Consensus 964 ~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~------~~l~-------------~~~~viaf~R~~----~~ 1020 (1065)
...++++++|+|++|||++|+|+.+.+ .++. .+.++++|.|.. +.
T Consensus 611 ------------~~~~l~~~~~~Li~lRk~~pal~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~la~~r~~~~~~~~ 678 (750)
T 1bf2_A 611 ------------DQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDS 678 (750)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHCGGGSCSSCCCTTTEEEECTTSSBCCHHHHTCTTCCEEEEEECGGGGTCS
T ss_pred ------------cchHHHHHHHHHHHHHhhChhhcCCcccccCcEEEecCCCCccCcccccCCCCCEEEEEEECCCCCCC
Confidence 124689999999999999999998864 4432 145899999985 45
Q ss_pred cEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccC
Q psy15051 1021 TSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSV 1055 (1065)
Q Consensus 1021 ~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~ 1055 (1065)
+.++||+|++.+++++.|+... .+..+++++++.
T Consensus 679 ~~~~vv~N~~~~~~~~~lp~~~-~g~~w~~~~~t~ 712 (750)
T 1bf2_A 679 NSIYVAYNGWSSSVTFTLPAPP-SGTQWYRVTDTC 712 (750)
T ss_dssp SCEEEEEECSSSCEEEECCCCS-SSSCEEEEEECS
T ss_pred CEEEEEECCCCCCEEEECCCCC-CCCcEEEEecCC
Confidence 6899999999999999998642 123688888765
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=426.32 Aligned_cols=343 Identities=16% Similarity=0.188 Sum_probs=239.6
Q ss_pred ccCChhhcccceEEEEeccc-----ccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC
Q psy15051 550 RCNQKEWWKNTVIYQILVPS-----FKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN 624 (1065)
Q Consensus 550 ~~~~~~ww~~~vIYei~v~~-----F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~ 624 (1065)
....|+||+++||||+|+++ |.++.+...|+|+ ||+++|||||+||||+|||+||+++.+
T Consensus 113 ~~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~---------------gi~~~LdyLk~LGvtaIwL~Pi~~~~s 177 (599)
T 3bc9_A 113 YPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWN---------------LLAERAPELAEAGFTAVWLPPANKGMA 177 (599)
T ss_dssp CCCCCGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHH---------------HHHHHHHHHHHHTCCEEECCCCSEETT
T ss_pred cCCCchhhcCceEEEEeeccccccccccCCCCCCCCHH---------------HHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 44568999999999987776 9876544458888 999999999999999999999999765
Q ss_pred --CCCCCcCCCCcc---------cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 625 --GDIGYDISNHTE---------VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 625 --~~~GY~~~dy~~---------idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
.+|||++.||++ |||+|||++||++||++|
T Consensus 178 ~~~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~a--------------------------------------- 218 (599)
T 3bc9_A 178 GIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDAL--------------------------------------- 218 (599)
T ss_dssp GGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHH---------------------------------------
T ss_pred CCCCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHH---------------------------------------
Confidence 479999999996 999999999999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhcc-CCCCCcceeecCC----CCCC-
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQK-IDPYTNYYVWKDG----LNGK- 765 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~~-~~~~~d~y~~~~~----~dG~- 765 (1065)
|++||+||+|+|+||++ ..|+||.....+ ..++.+++.|... .++.
T Consensus 219 --------------------------H~~GI~VilD~V~NH~~~~~~~~wf~~~~~~~~~~~~~~~~w~~~~~pg~~~~Y 272 (599)
T 3bc9_A 219 --------------------------HNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEY 272 (599)
T ss_dssp --------------------------HHTTCEEEEEECCSEECSCSEEEEEEBCTTCSSSTTCEEEEEEEBCCTTTTTSS
T ss_pred --------------------------HHCCCEEEEEECcCCCCCCcCCccccccccCCCCCcccccccccccCCCCCCCC
Confidence 77777888888888885 457787654321 1112222222110 0000
Q ss_pred -----------------CC-------CCCCCCc-------------cccCCCHHHHHHHHHH------------------
Q psy15051 766 -----------------PG-------TPPNNWK-------------HINITSREVMRSQKDV------------------ 790 (1065)
Q Consensus 766 -----------------p~-------~~~~~W~-------------~ln~~n~~v~~~l~~~------------------ 790 (1065)
+. .....|. .||+.||+||++|.++
T Consensus 273 ~~~~~~w~~f~g~d~~~~~~~~~~f~~~~~~W~~~~~~~~~~~~~pdLn~~np~Vr~~l~~~l~~Wl~e~GVDGfRlDaa 352 (599)
T 3bc9_A 273 SNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAV 352 (599)
T ss_dssp CCCCBCGGGEEEEEEETTTTEEEEEEBTTCCCCCCSSTTCSCCSSEEECTTCHHHHHHHHHHHHHHHHTTCCCEEEETTG
T ss_pred ccCccccccCCCCCCccccccccccccCCCCcccccCCccccccCCCcCCCCHHHHHHHHHHHHHHHHcCCCCEEEeccc
Confidence 00 0012332 3999999999999988
Q ss_pred --------------HHh-cCCceEEEeecCCCChHHHhhhccCCC---CccccccccHHHHHHhhcCCChHHHHHHHHHH
Q psy15051 791 --------------VQS-FPLILMIITEAYSPSLEKVAKYYGTGD---TQGTHLSVNYEIMNKFGATSNAKDLENVVNAY 852 (1065)
Q Consensus 791 --------------lk~-~~~~~~ligE~~~~~~~~~~~y~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~ 852 (1065)
+++ ..++++++||.|...+..+..|++... ...+|+.+++.+..++.+. .+.+.+...
T Consensus 353 ~~i~~~f~~~~~~~l~~~~~p~~~~igE~~~~~~~~~~~y~~~~~~~~~~~fdf~~~~~~~~~~~g~----~l~~~~~~~ 428 (599)
T 3bc9_A 353 KHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGNPDLRVFDFPLRSFFVDMLNGA----YMADLRNAG 428 (599)
T ss_dssp GGSCHHHHHHHHHHHHHTCSSCCEEEECCCCCSHHHHHHHHHHHCCTTEEEECHHHHHHHHHHTTCC----CGGGGGSCS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCeEEEEcccCCCHHHHHHHhcccCCccceecChHHHHHHHHHhcch----hHHHHHHHH
Confidence 222 346899999999987776666665321 1345666666666555421 222222222
Q ss_pred hhcCCC-CCcccccccCCChhhHhhhcCHH---HHHHHHHHHH-hCCCeEEEEcccccCccCCCCccCCCCCcccccccc
Q psy15051 853 LKSLPS-GKWSSWMVGGHSITRIATRYSPD---LVDAMNMLTL-LLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGK 927 (1065)
Q Consensus 853 ~~~~~~-~~~~~~flenHD~~Rl~s~~~~~---~~kla~~ll~-tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~ 927 (1065)
...... ....++|++|||+.|+.++.+.+ +.++++++++ ++||+|+||||+|+|+.
T Consensus 429 ~~~~~~~p~~~v~fl~NHD~~R~~s~~~~~~~~~~~lA~a~ll~t~pG~P~IyyG~E~G~~------------------- 489 (599)
T 3bc9_A 429 LVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWE------------------- 489 (599)
T ss_dssp GGGSTTTGGGEEECSCCTTTSCSSSCSSCCCCSSHHHHHHHHHHCSSSEEEEEHHHHHTSC-------------------
T ss_pred HhhccCCchhheeEecCCCCCccccccccHhHHHHHHHHHHHHHcCCCceEEEechhhCCc-------------------
Confidence 111110 12234699999999998874332 3677766654 68999999999999881
Q ss_pred ccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEc-
Q psy15051 928 DNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIST- 1006 (1065)
Q Consensus 928 ~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~- 1006 (1065)
+..+||+|++||+++ ..|+++.+.
T Consensus 490 ----------------------------------------------------~~~~~~~Li~lRk~~---~~G~~~~~~~ 514 (599)
T 3bc9_A 490 ----------------------------------------------------MKEGLDKLLTARRYY---AYGPGYEVDN 514 (599)
T ss_dssp ----------------------------------------------------CHHHHHHHHHHHHHT---CCSCEEECSC
T ss_pred ----------------------------------------------------hHHHHHHHHHHHHHh---ccCCeEEEEe
Confidence 013899999999996 478888876
Q ss_pred cCCcEEEEEEEcCCc-----EEEEEEECCCC---cEEEEcCCCccCCCcEEEEEc
Q psy15051 1007 PNNYVFILTRTEGST-----SVYLIINLNSR---TETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 1007 ~~~~viaf~R~~~~~-----~vlVv~N~s~~---~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
.+++++||.|..+++ .++|++|++.. .+++.++. ..+.++.+++
T Consensus 515 ~~~~v~af~R~~~~~~~~~~~vvvi~N~~~~~~~~~~v~~~~---~~g~~~dll~ 566 (599)
T 3bc9_A 515 NDADIYSYVRSGFPDVAGDGLVLMISDGTSGNVAGKWINSRQ---PDTEFYDLTG 566 (599)
T ss_dssp CCSSEEEEEECCCTTSTTCCEEEEEECCCSCCEEEEEEECSC---TTCEEEETTS
T ss_pred CCCCEEEEEEECCCCccCCCEEEEEEeCCCCCceeEEEEecC---CCCEEEEccC
Confidence 567899999986554 78888999887 67787754 2245555544
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=415.02 Aligned_cols=341 Identities=16% Similarity=0.229 Sum_probs=242.6
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCcc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~~ 636 (1065)
++.||||+++.+|.+ +.|+|+ ||+++|||||+||||+||||||+++.+ .+|||++.||++
T Consensus 5 ~~~vi~q~f~w~~~~----~gG~~~---------------gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~ 65 (485)
T 1wpc_A 5 TNGTMMQYFEWYLPN----DGNHWN---------------RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYD 65 (485)
T ss_dssp CCCCEEECCCTTCCS----SSCHHH---------------HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTC
T ss_pred CCceEEEEEecCCCC----CCCcHH---------------HHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccc
Confidence 468999999999964 358899 999999999999999999999999654 469999999995
Q ss_pred ---------cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 637 ---------VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 637 ---------idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
|||+|||++|||+||++|
T Consensus 66 ~~~~~q~~~idp~~Gt~~df~~Lv~~a----------------------------------------------------- 92 (485)
T 1wpc_A 66 LGEFNQKGTVRTKYGTRSQLQAAVTSL----------------------------------------------------- 92 (485)
T ss_dssp SSCSCBTTBSSCSSCCHHHHHHHHHHH-----------------------------------------------------
T ss_pred cccccccCccCCCCCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhc------------------------c-CCCCCc----ce
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQ------------------------K-IDPYTN----YY 756 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~------------------------~-~~~~~d----~y 756 (1065)
|++||+||+|+|+||++ ..|+||..+.. + .++|.+ ||
T Consensus 93 ------------H~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~ 160 (485)
T 1wpc_A 93 ------------KNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWY 160 (485)
T ss_dssp ------------HHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGG
T ss_pred ------------HHCCCEEEEEEeccccCCCCcCcceeEEeeCccccccccccccccccccccCCCCCCCccccCccccc
Confidence 77788888888888885 46777765321 1 224554 44
Q ss_pred eecCCCCCCCCC----------CCCCCc----------------cccCCCHHHHHHHHHH--------------------
Q psy15051 757 VWKDGLNGKPGT----------PPNNWK----------------HINITSREVMRSQKDV-------------------- 790 (1065)
Q Consensus 757 ~~~~~~dG~p~~----------~~~~W~----------------~ln~~n~~v~~~l~~~-------------------- 790 (1065)
.+.......|.. ....|. .||+.||+|+++|.++
T Consensus 161 ~~~~~d~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~ 240 (485)
T 1wpc_A 161 HFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKH 240 (485)
T ss_dssp GEEEESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGG
T ss_pred cCCCCCcccccccccceeeecCCCCCcccccccccCCccccccCccccCCHHHHHHHHHHHHHHHHhCCCCEEEhHhhhc
Confidence 443110000000 012332 3999999999999987
Q ss_pred ------------HHh-cCCceEEEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhcCCChHHHHHHHHHHh-h
Q psy15051 791 ------------VQS-FPLILMIITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL-K 854 (1065)
Q Consensus 791 ------------lk~-~~~~~~ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 854 (1065)
+++ ..++++++||.|...+..+..|.+... ..++|+++++.+..++... ....+.+.+.... .
T Consensus 241 i~~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 319 (485)
T 1wpc_A 241 IKYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSG-GNYDMRNIFNGTVVQ 319 (485)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHTTT-TCSCGGGTTTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccCChHHHHHHHhhcCCcceeeCHHHHHHHHHHHccC-CcccHHHHHhhhhcc
Confidence 222 346899999999987766666665322 2457777777777766431 1112222111111 1
Q ss_pred cCCCCCcccccccCCChhhHhhhcCHH---HHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCccccccccccc
Q psy15051 855 SLPSGKWSSWMVGGHSITRIATRYSPD---LVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNY 930 (1065)
Q Consensus 855 ~~~~~~~~~~flenHD~~Rl~s~~~~~---~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~ 930 (1065)
..+ ....+|++|||+.|+.+..+.. +.+++++++|++| |+|+||||+|+|+.+.. |
T Consensus 320 ~~~--~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~~~~-------d----------- 379 (485)
T 1wpc_A 320 RHP--SHAVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHG-------V----------- 379 (485)
T ss_dssp HCG--GGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGT-------B-----------
T ss_pred cCC--CcceEEeccCCCCccccccccchhHHHHHHHHHHHhCCCCeeEEEeccccCcCCCC-------C-----------
Confidence 112 2234699999999998877532 3578889999997 99999999999997520 1
Q ss_pred cccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCc
Q psy15051 931 LKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNY 1010 (1065)
Q Consensus 931 ~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~ 1010 (1065)
.++.+++|+|++||+++ +.|+++.+..+++
T Consensus 380 -----------------------------------------------~~~~~~~~~Li~lR~~~---~~g~~~~~~~~~~ 409 (485)
T 1wpc_A 380 -----------------------------------------------PAMRSKIDPILEARQKY---AYGKQNDYLDHHN 409 (485)
T ss_dssp -----------------------------------------------CCCHHHHHHHHHHHHHT---CCSCEEEECCSSS
T ss_pred -----------------------------------------------ccHHHHHHHHHHHHHHh---ccCCcceeecCCC
Confidence 12457999999999985 6788888877778
Q ss_pred EEEEEEEcCCc-----EEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1011 VFILTRTEGST-----SVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1011 viaf~R~~~~~-----~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
+++|.|..+++ .++|++|++.+++++.++.. ...+.++.++++
T Consensus 410 ~~a~~R~~~~~~~~~~~~vv~~N~~~~~~~~~~~~~-~~~~~~~d~l~~ 457 (485)
T 1wpc_A 410 IIGWTREGNTAHPNSGLATIMSDGAGGSKWMFVGRN-KAGQVWSDITGN 457 (485)
T ss_dssp EEEEEECCCTTSTTCCEEEEEESSSCEEEEEECCGG-GTTCEEEETTSS
T ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCC-CCCceEEeccCC
Confidence 99999986543 66677899988888888642 123455555543
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=427.66 Aligned_cols=391 Identities=18% Similarity=0.241 Sum_probs=257.2
Q ss_pred hhhcccceEEEEecccccCcCC------CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC-----
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG----- 622 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~------d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~----- 622 (1065)
..+|+++||||+|+|+|+...+ ++.|+|+ ||+++|+|||+||||+||||||+++
T Consensus 262 ~~~~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~---------------gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e 326 (877)
T 3faw_A 262 FKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFA---------------AFSEKLDYLQKLGVTHIQLLPVLSYFYVNE 326 (877)
T ss_dssp CCSGGGCEEEEECTTGGGCCGGGTTTCSSCTTSHH---------------HHGGGHHHHHHHTCSEEEESCCBCBSSCBT
T ss_pred CCCccccEEEEEEchHhcCCCCCCccccCCCCCHH---------------HHHHHHHHHHHcCCCEEEEcchhccccccc
Confidence 3578999999999999986322 1247777 9999999999999999999999984
Q ss_pred ------------CCCC-CCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhh
Q psy15051 623 ------------PNGD-IGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMY 681 (1065)
Q Consensus 623 ------------~~~~-~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~ 681 (1065)
..++ |||++.+|++|+++||| ++|||+||++|
T Consensus 327 ~~~~~~~~~~~~~~~ynwGY~~~~~~a~~~~yGt~p~~~~~~~~efk~lV~~~--------------------------- 379 (877)
T 3faw_A 327 MDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDI--------------------------- 379 (877)
T ss_dssp TCCCCCCSCCSSSCSCCCSCSBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHH---------------------------
T ss_pred ccccccccccCCCCCCccCcCcCccccccccccCCCCCcchHHHHHHHHHHHH---------------------------
Confidence 1223 99999999999999999 79999999999
Q ss_pred hhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCC
Q psy15051 682 AICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDG 761 (1065)
Q Consensus 682 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~ 761 (1065)
|++||+||||+|+||++..++|... .++||.+...
T Consensus 380 --------------------------------------H~~GI~VILDvV~NH~a~~~~~~~~-------~p~yy~~~~~ 414 (877)
T 3faw_A 380 --------------------------------------HKRGMGVILDVVYNHTAKTYLFEDI-------EPNYYHFMNE 414 (877)
T ss_dssp --------------------------------------HHTTCEEEEEECTTCCSCTHHHHTT-------STTTSBCBCT
T ss_pred --------------------------------------HHcCCEEEEEEeeccccCccccccC-------CCceeeeeCC
Confidence 8888899999999999998876433 3467765432
Q ss_pred CCCCCCCCCCCCcc--ccCCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCC
Q psy15051 762 LNGKPGTPPNNWKH--INITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSP 807 (1065)
Q Consensus 762 ~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~ 807 (1065)
+|. ...+|.. +|+.+|+|+++|.++++ +..|+++++||.|..
T Consensus 415 -dg~---~~~~~~g~~ln~~~p~Vr~~i~d~l~~Wv~e~gVDGFRfD~a~~~~~~~~~~~~~~~~~~~P~~~ligE~Wd~ 490 (877)
T 3faw_A 415 -DGS---PRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAINPNMIMIGEGWRT 490 (877)
T ss_dssp -TSC---BCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred -CCC---eeccCCCcccccCCHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHHHHhhCCCcEEEEccccc
Confidence 343 1222332 99999999999999832 235689999999985
Q ss_pred ChHHHhhhccCCCC-c--cc---cccccHHHHHHhhcCC-----------ChHHHHHHHHHHhhc---C--CCCCccccc
Q psy15051 808 SLEKVAKYYGTGDT-Q--GT---HLSVNYEIMNKFGATS-----------NAKDLENVVNAYLKS---L--PSGKWSSWM 865 (1065)
Q Consensus 808 ~~~~~~~y~~~~~~-~--~~---d~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~~~---~--~~~~~~~~f 865 (1065)
... ...+...... . .+ ...|+..+++.+++.. ....+...+...... + ......++|
T Consensus 491 ~~g-~~~~~~~~~~~~~~~~~~~i~~f~d~iR~~~rg~~~~~~~~gf~~g~~~~l~~~~~~l~~~~~~~~~~~P~~sVnF 569 (877)
T 3faw_A 491 FQG-DQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFEADSPGDVVQY 569 (877)
T ss_dssp CCC-BTTBCCCBSSGGGGGGCSSEEEECHHHHHHHHCCTTCTTCCCGGGTCCEEHHHHHHHHTTCCSSSCCSSGGGEEEC
T ss_pred ccc-cccccccccchhhhhcCCccchhhHHHHHHHccccccccchhhhcCCcHHHHHHHHHhhcCccccccCCccceeee
Confidence 111 1111110000 0 01 1236777888775431 122233334333221 1 111234569
Q ss_pred ccCCChhhHhhhcC--------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCC-c-ccccccccc
Q psy15051 866 VGGHSITRIATRYS--------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRD-P-EGYIFGKDN 929 (1065)
Q Consensus 866 lenHD~~Rl~s~~~--------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~D-p-~~~~~~~~~ 929 (1065)
++|||+.|+.+.++ .++.+++++++|+++|+||||+|||+|.+..... +.+.- + +.....+..
T Consensus 570 V~nHD~~tl~Dlls~~~k~n~~~~~~~~~~r~~lA~alllls~GiP~i~~GdE~grs~~gnn-n~Ycq~~~~D~~p~k~~ 648 (877)
T 3faw_A 570 IAAHDNLTLHDVIAKSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLN-PDYMTKVSDDKLPNKAT 648 (877)
T ss_dssp SCCSSSSCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBCCC-GGGSSCCCGGGCCTTEE
T ss_pred eecccchhHHhhhhhhhcCCcccCHHHHHHHHHHHHHHHHhcCCccccccchhhhcccCCCc-ccccccccccccccccc
Confidence 99999999888753 2367888899999999999999999998864200 00000 0 000000000
Q ss_pred c------------cccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc
Q psy15051 930 Y------------LKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997 (1065)
Q Consensus 930 ~------------~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL 997 (1065)
+ +.++.+.....++|+...+. .......++++++|+|++||+++|+|
T Consensus 649 ~~d~p~~~~~f~~nsy~s~d~in~~DW~~~~~~---------------------~~~~~~~~l~~~~k~Li~lRk~~pal 707 (877)
T 3faw_A 649 LIEAVKEYPYFIHDSYDSSDAINHFDWAAATDN---------------------NKHPISTKTQAYTAGLITLRRSTDAF 707 (877)
T ss_dssp ECTTCSSSCEEESCCTTCCHHHHSCCHHHHHCT---------------------TTCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccccccccccccccccCCccccccccccccccc---------------------ccccccHHHHHHHHHHHHHHhhChhh
Confidence 0 00000001122333321100 00001246999999999999999999
Q ss_pred cCCCe-------EEEccC--------CcEEEEEEEc-CCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCc
Q psy15051 998 RMGDY-------KISTPN--------NYVFILTRTE-GSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSG 1058 (1065)
Q Consensus 998 ~~G~~-------~~l~~~--------~~viaf~R~~-~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~ 1058 (1065)
+.+++ .++..+ +.++||.|.. .++.++|++|++.+++++.|+......+.+++++++...+
T Consensus 708 r~~~~~~i~~~v~~~~~~~~~~~~~~~~vlay~~~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~~w~vl~dt~~~~ 784 (877)
T 3faw_A 708 RKLSKAEIDREVSLITEVGQGDIKEKDLVIAYQTIDSKGDIYAVFVNADSKARNVLLGEKYKHLLKGQVIVDADQAG 784 (877)
T ss_dssp SCSCHHHHHHHCEESSCTTSTTCCSEESEEEEEEECTTCCEEEEEEECSSSCEEEECHHHHGGGGGSEEEECSSCBS
T ss_pred hCCchHhhcCceEEEcCCCCCCcCcCCCEEEEEEECCCCCEEEEEEeCCCCEEEEECCCCccCCccEEEEeCCCccC
Confidence 98853 444332 4699999874 4578999999999999999987544344688888775544
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=412.06 Aligned_cols=354 Identities=16% Similarity=0.222 Sum_probs=247.5
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCCC-CCCCcCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPNG-DIGYDISN 633 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~~-~~GY~~~d 633 (1065)
.+++.+|||+|+++|+.+ |+++ ||+++| +|||+||||+||||||++++.. +|||++.|
T Consensus 242 ~~~~~~IYE~h~~s~~~~-----G~~~---------------~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~ 301 (722)
T 3k1d_A 242 VNEAMSTYEVHLGSWRPG-----LSYR---------------QLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTS 301 (722)
T ss_dssp GGSCCEEEEECTTTSSTT-----CCHH---------------HHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSE
T ss_pred CCCCeEEEEEehhhccCC-----CCHH---------------HHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCccc
Confidence 356789999999999863 8999 999998 9999999999999999998764 59999999
Q ss_pred CcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCccc
Q psy15051 634 HTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQN 713 (1065)
Q Consensus 634 y~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
|++|+|+|||++|||+||++|
T Consensus 302 y~a~~~~yGt~~dfk~lV~~~----------------------------------------------------------- 322 (722)
T 3k1d_A 302 YYAPTSRFGTPDDFRALVDAL----------------------------------------------------------- 322 (722)
T ss_dssp EEEECGGGCCHHHHHHHHHHH-----------------------------------------------------------
T ss_pred CcCccccCCCHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred chhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH-
Q psy15051 714 RAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV- 790 (1065)
Q Consensus 714 ~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~- 790 (1065)
|++||+||+|+|+||++.+. |+.....+. .+|...+...|. ...|.. +|+.+++|+++|.++
T Consensus 323 ------H~~GI~VilD~V~NH~~~~~-~~~~~fdg~----~~y~~~d~~~~~----~~~Wg~~~ln~~~p~Vr~~l~~~~ 387 (722)
T 3k1d_A 323 ------HQAGIGVIVDWVPAHFPKDA-WALGRFDGT----PLYEHSDPKRGE----QLDWGTYVFDFGRPEVRNFLVANA 387 (722)
T ss_dssp ------HHTTCEEEEEECTTCCCCCT-TTTTTTTSS----CCSBCCCCCSSS----TTCCCCCCBCTTSHHHHHHHHHHH
T ss_pred ------HHcCCEEEEEEEeeccCCcc-chhhcCCCC----cccccCCcccCc----cCCCCCeeecCCCHHHHHHHHHHH
Confidence 66666777777777776553 322222221 122211111111 223443 677777777766665
Q ss_pred -------------------------------------------------------HHhcCCceEEEeecCCCChHHHhhh
Q psy15051 791 -------------------------------------------------------VQSFPLILMIITEAYSPSLEKVAKY 815 (1065)
Q Consensus 791 -------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~~y 815 (1065)
+++..|++++|||.+...+......
T Consensus 388 ~~Wl~~~gvDGfR~Dav~~mly~d~~r~~g~w~~n~~gg~~n~~~~~fl~~l~~~v~~~~P~~~~iaE~~t~~p~v~~~~ 467 (722)
T 3k1d_A 388 LYWLQEFHIDGLRVDAVASMLYLDYSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPT 467 (722)
T ss_dssp HHHHHHSCCCEEEECCTHHHHBCCCCCCSSCCSCCCSSCSBCHHHHHHHHHHHHHHHHHSTTCEEEECCCSSCCCTTSCG
T ss_pred HHHHHHhCCCEEEEcchhhhhhccccccccccccccCCCccChHHHHHHHHHHHHHHHhCCCeEEEEEecCCCccccccc
Confidence 2333458999999987655444433
Q ss_pred ccCCCCccccccccHHHHHHhh-----cCCChHHHHHHHHHHhhcCCCCCcccccccCCChh-----hHhhhcCHH----
Q psy15051 816 YGTGDTQGTHLSVNYEIMNKFG-----ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSIT-----RIATRYSPD---- 881 (1065)
Q Consensus 816 ~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~-----Rl~s~~~~~---- 881 (1065)
... ..++++.+++.++.... ...........+.......-.. ..+++.|||+. |+.+++.++
T Consensus 468 ~~g--GlGfd~~wn~~~~~d~l~y~~~~~~~r~~~~~~lt~~~~ya~~e--~f~l~~sHD~~~~Gk~~ll~~~~gd~~~~ 543 (722)
T 3k1d_A 468 NIG--GLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMTFSMLYAFSE--NYVLPLSHDEVVHGKGTLWGRMPGNNHVK 543 (722)
T ss_dssp GGT--CCCCSEEECHHHHHHHHHHHHSCGGGGGGGHHHHHGGGGTTTSS--CEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred ccC--CCccccccccchHHHHHHHHhcCchhhhhhhhccchhhhhhccc--ceecccCcchhccCccchhhhCCCcHHHH
Confidence 332 25788888877765431 1121222222222111111111 12367899998 898888544
Q ss_pred --HHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCC
Q psy15051 882 --LVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWL 959 (1065)
Q Consensus 882 --~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl 959 (1065)
++|++++++|++||+||||||+|+|+.+.. .++.+|+|......
T Consensus 544 ~a~lr~~~a~~lt~PG~plif~G~E~G~~~e~-------------------------~~~~~l~W~~~~~~--------- 589 (722)
T 3k1d_A 544 AAGLRSLLAYQWAHPGKQLLFMGQEFGQRAEW-------------------------SEQRGLDWFQLDEN--------- 589 (722)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTGGGTCCSCC-------------------------CTTTCCCGGGGGSS---------
T ss_pred HHHHHHHHHHHHhCCCeeEEeccccccccccc-------------------------ccccccCcccccCc---------
Confidence 678889999999999999999999998753 14678888764310
Q ss_pred CCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-----CeEEEcc---CCcEEEEEEEcC-CcEEEEEEECC
Q psy15051 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-----DYKISTP---NNYVFILTRTEG-STSVYLIINLN 1030 (1065)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-----~~~~l~~---~~~viaf~R~~~-~~~vlVv~N~s 1030 (1065)
...+.+.+++|+|++||+++|+|+.+ .++++.. +++|++|.|... ++.+|||+|++
T Consensus 590 ---------------~~~~~l~~~~~~Ln~lR~~~paL~~~d~~~~gf~wi~~~d~~~~viaf~R~~~~~~~llvv~N~s 654 (722)
T 3k1d_A 590 ---------------GFSNGIQRLVRDINDIYRCHPALWSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNFA 654 (722)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHHCGGGTTTTTSGGGEEEEEEEETTTTEEEEEEECTTSCEEEEEEECS
T ss_pred ---------------cccHHHHHHHHHHHHHHHhChhhhccccCCCceEEEEccCCCCCEEEEEEEcCCCCEEEEEEeCC
Confidence 00346899999999999999999754 4666653 568999999954 47899999999
Q ss_pred CCcE-E--EEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1031 SRTE-T--VDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1031 ~~~~-~--v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
+.++ . +.++ .+|.++.+++|+...++
T Consensus 655 ~~~~~~y~igvp----~~G~~~eilnsd~~~yg 683 (722)
T 3k1d_A 655 GAEHRDYRLGLP----RAGRWREVLNTDATIYH 683 (722)
T ss_dssp SSCEEEEEEEES----SCEEEEEEEETTCGGGT
T ss_pred CCCceeEEeccC----CCCEEEEEeeCchhhcC
Confidence 8765 3 4544 35788999988777654
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=410.78 Aligned_cols=340 Identities=16% Similarity=0.216 Sum_probs=240.1
Q ss_pred cceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCcc-
Q psy15051 559 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHTE- 636 (1065)
Q Consensus 559 ~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~~- 636 (1065)
+.||||++...+.+ +.|+|+ ||+++|||||+||||+||||||+++.+ .+|||++.||++
T Consensus 4 ~~vi~q~f~w~~~~----~gG~~~---------------gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~ 64 (480)
T 1ud2_A 4 NGTMMQYYEWHLEN----DGQHWN---------------RLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDL 64 (480)
T ss_dssp CCCEEECCCTTCCC----SSCHHH---------------HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCS
T ss_pred CceEEEeeeccCCC----CCCcHH---------------HHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhc
Confidence 67999999998864 358999 999999999999999999999999754 469999999995
Q ss_pred --------cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCc
Q psy15051 637 --------VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708 (1065)
Q Consensus 637 --------idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 708 (1065)
|||+|||++|||+||++|
T Consensus 65 ~~~~~~~~idp~~Gt~~df~~lv~~a------------------------------------------------------ 90 (480)
T 1ud2_A 65 GEFNQKGTVRTKYGTKAQLERAIGSL------------------------------------------------------ 90 (480)
T ss_dssp SCSCBTTBSSCSSCCHHHHHHHHHHH------------------------------------------------------
T ss_pred ccccccCccCCCCCCHHHHHHHHHHH------------------------------------------------------
Confidence 999999999999999999
Q ss_pred cCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhc------------------------c-CCCCCc----cee
Q psy15051 709 AGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQ------------------------K-IDPYTN----YYV 757 (1065)
Q Consensus 709 ~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~------------------------~-~~~~~d----~y~ 757 (1065)
|++||+||+|+|+||++ ..|+||..+.. + .++|.+ ||.
T Consensus 91 -----------H~~Gi~VilD~V~NH~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~w~~~~~pg~~~~y~~~~~~~~~ 159 (480)
T 1ud2_A 91 -----------KSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFH 159 (480)
T ss_dssp -----------HHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGG
T ss_pred -----------HHCCCEEEEEEccCccccccccccceeeecCCcccccccccccccccccccccCCCCCCcccCcccccc
Confidence 77788888888888885 46777765321 1 124543 555
Q ss_pred ecCCCCCCCCC-------CCCCCc----------------cccCCCHHHHHHHHHH------------------------
Q psy15051 758 WKDGLNGKPGT-------PPNNWK----------------HINITSREVMRSQKDV------------------------ 790 (1065)
Q Consensus 758 ~~~~~dG~p~~-------~~~~W~----------------~ln~~n~~v~~~l~~~------------------------ 790 (1065)
+.......|.. ....|. .||+.||+|+++|.++
T Consensus 160 ~~~~d~~~~~~~~~~~~~~~~~W~~~~~~~~g~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i~~~ 239 (480)
T 1ud2_A 160 FNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFW 239 (480)
T ss_dssp EEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred cCCCCCcccccccccccccCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHccCCCEEEEcchhhCCHH
Confidence 43110000000 012222 3999999999999988
Q ss_pred --------HHh-cCCceEEEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhcCCChHHHHHHHHHHh-hcCCC
Q psy15051 791 --------VQS-FPLILMIITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL-KSLPS 858 (1065)
Q Consensus 791 --------lk~-~~~~~~ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 858 (1065)
+++ ..++++++||.|...+..+..|.+... ..++|+++++.+..++... ....+...+.... ...+
T Consensus 240 f~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~- 317 (480)
T 1ud2_A 240 YTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQG-GSYDMRNILRGSLVEAHP- 317 (480)
T ss_dssp HHHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHC-TTSCGGGTTTTCHHHHCG-
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccCCCHHHHHHHHhccCCcceeechHHHHHHHHHHhcC-CcccHHHHHhccccccCC-
Confidence 222 346899999999987776666665322 2457777777777766431 1112222121111 1122
Q ss_pred CCcccccccCCChhhHhhhcCH--H-HHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccc
Q psy15051 859 GKWSSWMVGGHSITRIATRYSP--D-LVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVC 934 (1065)
Q Consensus 859 ~~~~~~flenHD~~Rl~s~~~~--~-~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~ 934 (1065)
....+|++|||+.|+.+..+. + +.+++++++|++| |+|+||||+|+|+.+.. |
T Consensus 318 -~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~-------d--------------- 374 (480)
T 1ud2_A 318 -MHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDN-------I--------------- 374 (480)
T ss_dssp -GGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGT-------B---------------
T ss_pred -CceEEEeccCCCCccccccccchhHHHHHHHHHHHHCCCCceEEecchhhCCCCCC-------C---------------
Confidence 223469999999999887753 2 3578899999997 99999999999998631 1
Q ss_pred cCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEE
Q psy15051 935 RDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFIL 1014 (1065)
Q Consensus 935 rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf 1014 (1065)
..+.++||+|++||+++ +.|.+..+..+++++||
T Consensus 375 -------------------------------------------~~~~~~~~~Li~lR~~~---~~g~~~~~~~~~~~~af 408 (480)
T 1ud2_A 375 -------------------------------------------SAKKDMIDELLDARQNY---AYGTQHDYFDHWDVVGW 408 (480)
T ss_dssp -------------------------------------------CCCHHHHHHHHHHHHHT---CCSCEEEECCSSSEEEE
T ss_pred -------------------------------------------chHHHHHHHHHHHHHHh---ccCCceEEecCCCEEEE
Confidence 12456899999999995 67888877767789999
Q ss_pred EEEcCCc----EEEE-EEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1015 TRTEGST----SVYL-IINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1015 ~R~~~~~----~vlV-v~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
.|..+++ .++| +.|++...+++.++.. ...+.++.++++
T Consensus 409 ~R~~~~~~~~~~~vvv~~N~~~~~~~~~~~~~-~~~~~~~d~l~~ 452 (480)
T 1ud2_A 409 TREGSSSRPNSGLATIMSNGPGGSKWMYVGRQ-NAGQTWTDLTGN 452 (480)
T ss_dssp EECCCTTSTTCCEEEEEESSSCEEEEEECCGG-GTTCEEEETTSS
T ss_pred EEEcCCCCCCCCEEEEEECCCCCcEEEEecCc-CCCCEEEehhCC
Confidence 9986543 4444 4677777788888642 123455555543
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=414.66 Aligned_cols=354 Identities=21% Similarity=0.294 Sum_probs=246.5
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDIS 632 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~ 632 (1065)
+..|++++|||+|+++|+. .|+|+ |++++|+|||+||||+||||||++++. .+|||++.
T Consensus 96 ~~~~~~~~iYe~~~~~f~~-----~G~~~---------------~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~ 155 (558)
T 3vgf_A 96 FLKKEDLIIYEIHVGTFTP-----EGTFE---------------GVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155 (558)
T ss_dssp CCCGGGCCEEEECHHHHSS-----SCSHH---------------HHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCC
T ss_pred CCCccccEEEEEeHHHhCC-----CCCHH---------------HHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccc
Confidence 3458999999999999975 48999 999999999999999999999999864 46999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
|||+|+|+|||++|||+||++|
T Consensus 156 ~~~~~~~~~Gt~~d~~~lv~~~---------------------------------------------------------- 177 (558)
T 3vgf_A 156 YLYAVQNSYGGPEGFRKLVDEA---------------------------------------------------------- 177 (558)
T ss_dssp EEEEECGGGTHHHHHHHHHHHH----------------------------------------------------------
T ss_pred cccccccccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccC---CCHHHHHHHH
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INI---TSREVMRSQK 788 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~---~n~~v~~~l~ 788 (1065)
|++||+||+|+|+||++.++.|+.. +..||.... ...|.. +|+ .+++|+++|.
T Consensus 178 -------h~~Gi~VilD~V~NH~~~~~~~~~~-------~~~~~~~~~---------~~~~g~~~n~~~~~~~~v~~~l~ 234 (558)
T 3vgf_A 178 -------HKKGLGVILDVVYNHVGPEGNYMVK-------LGPYFSQKY---------KTPWGLTFNFDDAESDEVRKFIL 234 (558)
T ss_dssp -------HHTTCEEEEEECCSCCCSSSCCGGG-------TSCCEEEEE---------EETTEEEECSSSTTHHHHHHHHH
T ss_pred -------HHcCCEEEEEEeeccccCCCCcccc-------cCCccCCCC---------CCCCCCcccCCCCCCHHHHHHHH
Confidence 8888888888889999988888765 234553221 112333 444 3678888888
Q ss_pred HHHHh-----------------cC---C--------------ceEEEeecCCCChHHHhhhccCCCCccccccccHHHHH
Q psy15051 789 DVVQS-----------------FP---L--------------ILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN 834 (1065)
Q Consensus 789 ~~lk~-----------------~~---~--------------~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~ 834 (1065)
++++. +. + .++++||.+...+..+..+... ..++++.|++.+..
T Consensus 235 ~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~~~~~~~~~iaE~~~~~~~~~~~~~~~--g~g~d~~~~~~~~~ 312 (558)
T 3vgf_A 235 ENVEYWIKEYNVDGFRLSAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKC--GYNIDAQWVDDFHH 312 (558)
T ss_dssp HHHHHHHHHHCCCEEEESCGGGCCCCSSSCHHHHHHHHHHHTTCEEEEECSSCCGGGTSCGGGT--CCCCSEEECHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccccccccHHHHHHHHHHHHhhcCEEEEEecCCCCcceeccccCC--CCceeeEEcHHHHH
Confidence 87321 10 0 1899999998766655433332 25688888887777
Q ss_pred Hhh----cCC--------ChHHHHHHHHHHhhcC-----------------CCCCcccccccCCCh--h-----hHhhhc
Q psy15051 835 KFG----ATS--------NAKDLENVVNAYLKSL-----------------PSGKWSSWMVGGHSI--T-----RIATRY 878 (1065)
Q Consensus 835 ~~~----~~~--------~~~~l~~~l~~~~~~~-----------------~~~~~~~~flenHD~--~-----Rl~s~~ 878 (1065)
.+. +.. ....+...+....... ......+.|++|||+ . |+....
T Consensus 313 ~l~~~~~~e~~~~~~d~~~~~~l~~~l~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~v~Fv~NHD~~gnr~~g~r~~~~~ 392 (558)
T 3vgf_A 313 SIHAYLTGERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLV 392 (558)
T ss_dssp HHHHHHHCCCSGGGGGCCCHHHHHHHHHHSCSCSSEEETTTTEEECCCCTTCCGGGEEECSCCHHHHHTSTTCCCGGGTS
T ss_pred HHHHHhcCCccccccccccHHHHHHHHHhhhccccccchhhhcccCCCcccCChHHheeeeeccchhccccccccccccC
Confidence 552 211 1234444443321100 011223459999998 3 344556
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcc--cccCCCCC-
Q psy15051 879 SPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQ--ENAGFSKA- 955 (1065)
Q Consensus 879 ~~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~--~~~gFs~~- 955 (1065)
+.++.+++++++|++||+||||||+|+|+.++...+.+..||+.....++ +.|..+.|... ....|...
T Consensus 393 ~~~~~~la~al~lt~pG~P~Iy~G~E~g~~~p~~~f~d~~d~~l~~~v~~--------Gr~~ef~~~~dp~~~~~f~~~~ 464 (558)
T 3vgf_A 393 DRESYKIAAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVRE--------GRKKENGQDTDPQDESTFNASK 464 (558)
T ss_dssp CHHHHHHHHHHHHTSSSEEEEETTGGGTCCSCCCCCCCCCSHHHHHHHHH--------HHHHHHCCCSCTTSHHHHHHTS
T ss_pred CHHHHHHHHHHHHhCCCcceeecChhhcCCCCCcccccCCCHHHHHHHhh--------hhhccccCCCCCCchhhhhccC
Confidence 67789999999999999999999999999998766777777653221111 00111101000 00011111
Q ss_pred CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeE-EEccCCcEEEEEEEcCCcEEEEEEECCCCcE
Q psy15051 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK-ISTPNNYVFILTRTEGSTSVYLIINLNSRTE 1034 (1065)
Q Consensus 956 ~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~-~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~ 1034 (1065)
.+| ....+++++||+|++||+++| ..|.+. ....++.+++|.| +.++||+|++++++
T Consensus 465 ~~w----------------~~~~~l~~~~r~L~~lR~~~~--~~g~~~~~~~~~~~vla~~R----~~vlVv~N~s~~~~ 522 (558)
T 3vgf_A 465 LSW----------------KIDEEIFSFYKILIKMRKELS--IACDRRVNVVNGENWLIIKG----REYFSLYVFSKSSI 522 (558)
T ss_dssp CCC----------------CCCHHHHHHHHHHHHHHHHTT--CTTCCCCEEEECSSEEEEEC----SSCEEEEESSCEEE
T ss_pred CCh----------------hHHHHHHHHHHHHHHHHhhCc--cCCCceeEEcCCCeEEEEEc----CeEEEEEECCCCCE
Confidence 122 011269999999999999998 566653 3445678999999 67999999999999
Q ss_pred EEEcCC
Q psy15051 1035 TVDLSD 1040 (1065)
Q Consensus 1035 ~v~l~~ 1040 (1065)
+++++.
T Consensus 523 ~v~l~g 528 (558)
T 3vgf_A 523 EVKYSG 528 (558)
T ss_dssp EECCCE
T ss_pred EEecCC
Confidence 988753
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=428.24 Aligned_cols=378 Identities=19% Similarity=0.290 Sum_probs=250.3
Q ss_pred hcccceEEEEecccccCcCC------CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC------
Q psy15051 556 WWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP------ 623 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~------d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~------ 623 (1065)
.|+++||||||+++|+.... ...|+|+ ||+++|+|||+||||+||||||++++
T Consensus 455 ~~~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~---------------gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~ 519 (1014)
T 2ya1_A 455 TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFE---------------AFIEKLDYLKDLGVTHIQLLPVLSYYFVNELK 519 (1014)
T ss_dssp SGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHH---------------HHHTTHHHHHHHTCSEEEESCCBCBSSCBGGG
T ss_pred CccccEEEEEecCCCCCCCCccccccCCCcCHH---------------HHHHHhHHHHHcCCCeEEecCccccccccccc
Confidence 47899999999999985321 1247777 99999999999999999999999841
Q ss_pred ------------CC-CCCCcCCCCcccCCCCCC--------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhh
Q psy15051 624 ------------NG-DIGYDISNHTEVGKDFGT--------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYA 682 (1065)
Q Consensus 624 ------------~~-~~GY~~~dy~~idp~~Gt--------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~ 682 (1065)
.. .|||++.+||+|+++||+ ++|||+||++|
T Consensus 520 ~~~~~~~y~~~~~~ynwGY~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~---------------------------- 571 (1014)
T 2ya1_A 520 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEI---------------------------- 571 (1014)
T ss_dssp TTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHH----------------------------
T ss_pred ccccccccccCcCCcccCCCcCcCccccccccCCCccccchHHHHHHHHHHH----------------------------
Confidence 12 399999999999999998 79999999999
Q ss_pred hccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC
Q psy15051 683 ICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL 762 (1065)
Q Consensus 683 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~ 762 (1065)
|++||+||||+|+||++..+.|... .++||.+...
T Consensus 572 -------------------------------------H~~GI~VIlDvV~NHt~~~~~~~~~-------~~~yy~~~~~- 606 (1014)
T 2ya1_A 572 -------------------------------------HKRGMGAILDVVYNHTAKVDLFEDL-------EPNYYHFMDA- 606 (1014)
T ss_dssp -------------------------------------HTTTCEEEEEECTTCCSCHHHHHTT-------STTTSBCBCT-
T ss_pred -------------------------------------HHcCCEEEEEEeccccccccccccC-------CCCeeEEeCC-
Confidence 8888889999999999987654221 3567765432
Q ss_pred CCCCCCCCCCCcc--ccCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCC
Q psy15051 763 NGKPGTPPNNWKH--INITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPS 808 (1065)
Q Consensus 763 dG~p~~~~~~W~~--ln~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~ 808 (1065)
+|. +..+|.. +++.+++|+++|.+++ ++..|++++|||.|...
T Consensus 607 ~g~---~~~~~~~~~l~~~~~~vr~~i~d~l~~W~~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~W~~~ 683 (1014)
T 2ya1_A 607 DGT---PRTSFGGGRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGWRTY 683 (1014)
T ss_dssp TCC---BCEETTEECBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHHHCTTCEEEECCCSCC
T ss_pred CCC---cccCCCCCCcCcCCHHHHHHHHHHHHHHHHhcCceEEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeecccc
Confidence 333 1223433 8899999999988872 22356899999999741
Q ss_pred hHHH-hhhccC--CCC--ccccccccHHHHHHhhcCC-----------ChHHHHHHHHHHhhc---C--CCCCccccccc
Q psy15051 809 LEKV-AKYYGT--GDT--QGTHLSVNYEIMNKFGATS-----------NAKDLENVVNAYLKS---L--PSGKWSSWMVG 867 (1065)
Q Consensus 809 ~~~~-~~y~~~--~~~--~~~d~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~~~---~--~~~~~~~~fle 867 (1065)
.... ...... +.. ......|+..+++.+++.. ....+.......... + ......++|++
T Consensus 684 ~g~~~~~~~~~~~~w~~~~~~~~~f~d~~r~~l~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~p~~~vnfv~ 763 (1014)
T 2ya1_A 684 AGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVIQYIA 763 (1014)
T ss_dssp CCSTTCCCCBSSGGGGGGCSSSEEECHHHHHHHSCCTTSTTCCCTTTTCCEEHHHHHHHHTTCCSSSCCSSGGGEEECSC
T ss_pred cCcccccccccccchhhcCCcccchhHHHHHHHhcccccccchhhhccCcccHHHHHHHHhcCccccccCChhhheEeee
Confidence 1000 000000 000 0113357778888775421 011233333332211 1 11223456999
Q ss_pred CCChhhHhhhcC----------------HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccc
Q psy15051 868 GHSITRIATRYS----------------PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931 (1065)
Q Consensus 868 nHD~~Rl~s~~~----------------~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~ 931 (1065)
|||+.|+.++++ .++++++++++|++||+||||||||+|+++.. .||.
T Consensus 764 nHD~~~l~d~v~~~~~~~~~~~~~~~~~~~~~rla~~lll~spGiP~i~~GdE~g~t~~~------~d~~---------- 827 (1014)
T 2ya1_A 764 AHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQF------RNPA---------- 827 (1014)
T ss_dssp CSSSSCHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHTSSSEEEEETTTTTTCCCBC------CCGG----------
T ss_pred cCCCCcccchhhhhccCCcccchhhHHHHHHHHHHHHHHHhCCCCcEEEechhhcccCCC------CChh----------
Confidence 999999866431 13678889999999999999999999999753 2332
Q ss_pred ccccCCCCCcCCCCcccc--------------------cCCCCC--CCCCCCCCCcccccHHHhh-----cCCCcHHHHH
Q psy15051 932 KVCRDGSRVPFQWNDQEN--------------------AGFSKA--KSWLPVHPNYWTLNAQAEK-----KTKPSHYSVY 984 (1065)
Q Consensus 932 ~~~rd~~R~~m~W~~~~~--------------------~gFs~~--~~wl~~~~~~~~~~~~~~~-----~~~~~l~~~~ 984 (1065)
.|.+|.|+.... ..+... ..| ++..... ...++++++|
T Consensus 828 ------~r~~~~~g~~~e~~~~~~~~~g~~f~~~~~~~dsy~~~~~~n~---------ldW~~~~~~~~~~~~~~l~~f~ 892 (1014)
T 2ya1_A 828 ------YRTPVAEDKVPNKSHLLRDKDGNPFDYPYFIHDSYDSSDAVNK---------FDWTKATDGKAYPENVKSRDYM 892 (1014)
T ss_dssp ------GSSCCCTTTCCTTEEEEECTTSCEEEEEEEESCCTTCCHHHHC---------CCHHHHHCTTTCHHHHHHHHHH
T ss_pred ------hhhhhhcccccchhhhhhcccccccccccccccCCCCCccccc---------cCCccccccccccchHHHHHHH
Confidence 334444432110 000000 001 1111111 1235699999
Q ss_pred HHHHHHHHhcccccCCCeEEE-------cc--------CCcEEEEEEEc-CCcEEEEEEECCCCcEEEEcCCCccCCCcE
Q psy15051 985 KDLTTLRATSGAVRMGDYKIS-------TP--------NNYVFILTRTE-GSTSVYLIINLNSRTETVDLSDCIENGGDV 1048 (1065)
Q Consensus 985 r~Li~LRk~~paL~~G~~~~l-------~~--------~~~viaf~R~~-~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~ 1048 (1065)
|+||+|||++|+|+.|++..+ .. ++.+++|.|.. .++.++|++|++.++++++|+........+
T Consensus 893 r~Li~LRk~~pal~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~a~~r~~~~~~~~lVv~N~~~~~~~~~lp~~~~~~~~~ 972 (1014)
T 2ya1_A 893 KGLIALRQSTDAFRLKSLQDIKDRVHLITVPGQNGVEKEDVVIGYQITAPNGDIYAVFVNADEKAREFNLGTAFAHLRNA 972 (1014)
T ss_dssp HHHHHHHHHCGGGSCSCHHHHHHHEEESSCTTSTTCCSEESEEEEEEECTTSCEEEEEEECSSSCEEEECTTTTGGGGGC
T ss_pred HHHHHHHhhCccccCCchhhhcCceEEEcCCCCCcccCCCcEEEEEEECCCCCEEEEEEcCCCCcEEEECCCcccCCCce
Confidence 999999999999999986322 11 13599999984 456899999999999999998632112345
Q ss_pred EEEEccC
Q psy15051 1049 AIFTSSV 1055 (1065)
Q Consensus 1049 ~v~~~s~ 1055 (1065)
++++++.
T Consensus 973 ~~~~d~~ 979 (1014)
T 2ya1_A 973 EVLADEN 979 (1014)
T ss_dssp EEEECSS
T ss_pred EEEEeCC
Confidence 6777664
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=396.99 Aligned_cols=328 Identities=15% Similarity=0.238 Sum_probs=222.8
Q ss_pred EEecccc-cCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccC-CCC
Q psy15051 564 QILVPSF-KDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVG-KDF 641 (1065)
Q Consensus 564 ei~v~~F-~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~id-p~~ 641 (1065)
+|++++| .++++|+.|||+ ||+++|+|||+||||+|||+||+++++. |||++.||++|| |+|
T Consensus 2 ~v~~~~F~~d~~~d~~G~~~---------------gi~~~ldyl~~lGv~~i~l~Pi~~~~~~-~gY~~~d~~~id~~~~ 65 (405)
T 1ht6_A 2 QVLFQGFNWESWKQSGGWYN---------------MMMGKVDDIAAAGVTHVWLPPPSHSVSN-EGYMPGRLYDIDASKY 65 (405)
T ss_dssp CCEEECCCTTGGGCTTCHHH---------------HHHTTHHHHHHTTCCEEEECCCSCBSST-TSSSBCCTTCGGGCTT
T ss_pred ccEEEeEEcCCCCCCCcCHH---------------HHHHHHHHHHHcCCCEEEeCCCccCCCC-CCCCccccccCCCccC
Confidence 3678999 688888899999 9999999999999999999999999865 999999999999 999
Q ss_pred CCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhh
Q psy15051 642 GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHR 721 (1065)
Q Consensus 642 Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 721 (1065)
||++|||+||++| |+
T Consensus 66 Gt~~d~~~lv~~~-----------------------------------------------------------------h~ 80 (405)
T 1ht6_A 66 GNAAELKSLIGAL-----------------------------------------------------------------HG 80 (405)
T ss_dssp CCHHHHHHHHHHH-----------------------------------------------------------------HH
T ss_pred CCHHHHHHHHHHH-----------------------------------------------------------------HH
Confidence 9999999999999 77
Q ss_pred cCcEEEEEeccCCCCCCch-----hhHhhhccCCCCCcce---eecCCC---CCCCCC-CCCCCc---cccCCCHHHHHH
Q psy15051 722 AGMKILVEFVPNHSSNKHD-----WFIKSAQKIDPYTNYY---VWKDGL---NGKPGT-PPNNWK---HINITSREVMRS 786 (1065)
Q Consensus 722 ~Gi~vIlDvV~NHts~~~~-----wf~~~~~~~~~~~d~y---~~~~~~---dG~p~~-~~~~W~---~ln~~n~~v~~~ 786 (1065)
+||+||+|+|+||++.+++ |+.-.......+.+|. +..... +|.... ....|. .||+.||+|+++
T Consensus 81 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 160 (405)
T 1ht6_A 81 KGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRE 160 (405)
T ss_dssp TTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHHH
T ss_pred CCCEEEEEECcCcccCCCCCCCCCcccCCCCCcCCCCCCCCccccCCCCCcCCCCCcccCCCCcCcCCccCcCCHHHHHH
Confidence 7777777788888887765 3310000000112221 111100 010000 000111 199999999999
Q ss_pred HHHHHHh-----------------------------cCCceEEEeecCCCCh---------------HHHhhhccC-CCC
Q psy15051 787 QKDVVQS-----------------------------FPLILMIITEAYSPSL---------------EKVAKYYGT-GDT 821 (1065)
Q Consensus 787 l~~~lk~-----------------------------~~~~~~ligE~~~~~~---------------~~~~~y~~~-~~~ 821 (1065)
|.++++. ..| .+++||.|.... ..+..|++. +..
T Consensus 161 i~~~~~~w~~~~gvDGfR~D~~~~~~~~f~~~~~~~~~p-~~~igE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~g~~ 239 (405)
T 1ht6_A 161 LKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSP-SLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGA 239 (405)
T ss_dssp HHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCC-SCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhccCCCEEEEeccccCCHHHHHHHHHhhCC-ceEEEEeccCCcccCccccccccchhHHHHHHHHhccCcc
Confidence 9998321 233 679999997521 122222221 001
Q ss_pred ccccccccHHHHHHhhcCC--ChHHHHHHHH---HHhhcCCCCCcccccccCCChhhHhhhc--CHHHHHHHHHHHHhCC
Q psy15051 822 QGTHLSVNYEIMNKFGATS--NAKDLENVVN---AYLKSLPSGKWSSWMVGGHSITRIATRY--SPDLVDAMNMLTLLLP 894 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~~~--~~~~l~~~l~---~~~~~~~~~~~~~~flenHD~~Rl~s~~--~~~~~kla~~ll~tlp 894 (1065)
...+++|++.+...+.... ....+...+. ......|. ...+|++|||+.|+.+.. +.++++++++++||+|
T Consensus 240 ~~~~~vfdf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~--~~~~fl~nHD~~r~~~~~~~~~~~~~~a~a~llt~p 317 (405)
T 1ht6_A 240 ASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPA--KAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHP 317 (405)
T ss_dssp GSSEEEECHHHHHHHHHHTTTCGGGGSCTTSSCSSHHHHCGG--GEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSS
T ss_pred cccceeechhhHHHHHHHHhhhHHHHHhhhcccchhhhcChh--hhhhccCCcCCccccccccCcHHHHHHHHHHHHhCC
Confidence 1223345655444332211 1111110000 00011122 234599999999998854 4568999999999999
Q ss_pred CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhh
Q psy15051 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEK 974 (1065)
Q Consensus 895 GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~ 974 (1065)
|+|+||||+|++ |+
T Consensus 318 G~P~iy~G~e~~-------------------------------------W~----------------------------- 331 (405)
T 1ht6_A 318 GIPCIFYDHFFN-------------------------------------WG----------------------------- 331 (405)
T ss_dssp SEEEEEHHHHHT-------------------------------------SS-----------------------------
T ss_pred CcceEEcCCCcC-------------------------------------ch-----------------------------
Confidence 999999999951 11
Q ss_pred cCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 975 KTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 975 ~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++++||+|++||+++|+|+.|+++.+..+++++||.| +++++|++|++.+. ++++ ++.+++++++
T Consensus 332 -----~~~~~~~Li~lR~~~~al~~g~~~~~~~~~~v~af~R---~~~~lv~~N~~~~~--~~~~-----~~~~~~~~~~ 396 (405)
T 1ht6_A 332 -----FKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEI---DGKVVVKIGSRYDV--GAVI-----PAGFVTSAHG 396 (405)
T ss_dssp -----CHHHHHHHHHHHHHTTCCTTCCEEEEEEETTEEEEEE---TTTEEEEESSCSCC--GGGS-----CTTCEEEEEE
T ss_pred -----HHHHHHHHHHHHHhCcccccCceEEEecCCCEEEEEE---CCeEEEEEcCCCcc--cccC-----CCccEEEecC
Confidence 5679999999999999999999999888889999999 35799999998774 3332 3568888876
Q ss_pred CC
Q psy15051 1055 VN 1056 (1065)
Q Consensus 1055 ~~ 1056 (1065)
..
T Consensus 397 ~~ 398 (405)
T 1ht6_A 397 ND 398 (405)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=406.22 Aligned_cols=343 Identities=15% Similarity=0.203 Sum_probs=240.0
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCcc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~~ 636 (1065)
++.||||++...+.+ +.|+|+ ||+++|||||+||||+||||||+++.+ .+|||++.||++
T Consensus 1 ~~~vi~q~f~w~~~~----~gG~~~---------------gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~ 61 (483)
T 3bh4_A 1 VNGTLMQYFEWYTPN----DGQHWK---------------RLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYD 61 (483)
T ss_dssp CCCCEEECCCTTCCS----SSCHHH---------------HHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTC
T ss_pred CCccEEEEEEeccCC----CCCCHH---------------HHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccc
Confidence 357999999998864 358899 999999999999999999999999754 469999999995
Q ss_pred ---------cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 637 ---------VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 637 ---------idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
|||+|||++|||+||++|
T Consensus 62 ~~~~~~~~~id~~~Gt~~df~~lv~~a----------------------------------------------------- 88 (483)
T 3bh4_A 62 LGEFQQKGTVRTKYGTKSELQDAIGSL----------------------------------------------------- 88 (483)
T ss_dssp SSCSCCSSCSSCSSCCHHHHHHHHHHH-----------------------------------------------------
T ss_pred cccccccCccCCCCCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhc------------------------c-CCCCCc----ce
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQ------------------------K-IDPYTN----YY 756 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~------------------------~-~~~~~d----~y 756 (1065)
|++||+||+|+|+||++ ..|+||..+.. + .++|.+ ||
T Consensus 89 ------------H~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~~~~ 156 (483)
T 3bh4_A 89 ------------HSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWY 156 (483)
T ss_dssp ------------HHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGG
T ss_pred ------------HHCCCEEEEEEccCcccCcccccceeeeeeCccccccccccccccccccccccCCCCcccccCccccc
Confidence 77777777778888885 35677654321 1 224554 44
Q ss_pred eecCCCCCCCC---------CCCCCCc----------------cccCCCHHHHHHHHHH---------------------
Q psy15051 757 VWKDGLNGKPG---------TPPNNWK----------------HINITSREVMRSQKDV--------------------- 790 (1065)
Q Consensus 757 ~~~~~~dG~p~---------~~~~~W~----------------~ln~~n~~v~~~l~~~--------------------- 790 (1065)
.+.......|. -....|. .||+.||+|+++|.++
T Consensus 157 ~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~gvDGfR~Da~~~i 236 (483)
T 3bh4_A 157 HFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHI 236 (483)
T ss_dssp GEEEEEEETTTTEEEEEEECSTTCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGS
T ss_pred cCCCCCcccccCccccccccCCCCCcccccccccCccccccCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEechhcC
Confidence 43210000000 0012232 3999999999999987
Q ss_pred -----------HHh-cCCceEEEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhcCCChHHHHHHHHHHh-hc
Q psy15051 791 -----------VQS-FPLILMIITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL-KS 855 (1065)
Q Consensus 791 -----------lk~-~~~~~~ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 855 (1065)
+++ ..++++++||.|...+..+..|.+... ..++|+++++.+..++.... ...+.+.+.... ..
T Consensus 237 ~~~f~~~~~~~~~~~~~~~~~~igE~~~~~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 315 (483)
T 3bh4_A 237 KFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGG-GYDMRRLLDGTVVSR 315 (483)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTT-CSCGGGTTTTCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEecCCChHHHHHHHhhcCCCceeecHHHHHHHHHHHhcCC-cccHHHHHhhhhhhc
Confidence 222 356899999999987666666665322 24577777777777664311 111222111111 11
Q ss_pred CCCCCcccccccCCChhhHhhhcCHH---HHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCcccccccccccc
Q psy15051 856 LPSGKWSSWMVGGHSITRIATRYSPD---LVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931 (1065)
Q Consensus 856 ~~~~~~~~~flenHD~~Rl~s~~~~~---~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~ 931 (1065)
.+ ...++|++|||+.|+.+..+.. ..+++++++|++| |+|+||||+|+|+.+.. +
T Consensus 316 ~~--~~~~~f~~nHD~~r~~~~~~~~~~~~~~~a~a~~l~~~~G~P~iy~G~E~g~~g~~---------~---------- 374 (483)
T 3bh4_A 316 HP--EKAVTFVENHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGTS---------P---------- 374 (483)
T ss_dssp CG--GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCCCCSS---------T----------
T ss_pred CC--cceeeEcccCCCCccccccccchhHHHHHHHHHHHHCCCCeEEEEehhhcCCCCCC---------c----------
Confidence 22 2234699999999998877532 3578889999997 99999999999998641 0
Q ss_pred ccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcE
Q psy15051 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYV 1011 (1065)
Q Consensus 932 ~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~v 1011 (1065)
+. ..++.+++|+|++||+++ +.|++..+..++++
T Consensus 375 ------------~~-------------------------------~~~~~~~~~~Li~lR~~~---~~g~~~~~~~~~~~ 408 (483)
T 3bh4_A 375 ------------KE-------------------------------IPSLKDNIEPILKARKEY---AYGPQHDYIDHPDV 408 (483)
T ss_dssp ------------TC-------------------------------CCCCHHHHHHHHHHHHHT---CCSCEEEECCSSSE
T ss_pred ------------cc-------------------------------chHHHHHHHHHHHHHHHh---ccCCceEeeCCCCE
Confidence 00 124678999999999984 68888888777789
Q ss_pred EEEEEEcCCc-----EEEEEEECCCCcEEEEcCCCccCCCcEEEEEc
Q psy15051 1012 FILTRTEGST-----SVYLIINLNSRTETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 1012 iaf~R~~~~~-----~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
+||.|..+++ .++|+.|++..++++.++... ..+.++.+++
T Consensus 409 ~af~R~~~~~~~~~~~~vvi~N~~~~~~~~~~~~~~-~~~~~~d~l~ 454 (483)
T 3bh4_A 409 IGWTREGDSSAAKSGLAALITDGPGGSKRMYAGLKN-AGETWYDITG 454 (483)
T ss_dssp EEEEECCCTTSTTCCEEEEEESSCCEEEEEECCGGG-TTCEEEETTS
T ss_pred EEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCcC-CCCeEEeccC
Confidence 9999996554 455557888888888886421 2245555554
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=408.54 Aligned_cols=336 Identities=16% Similarity=0.205 Sum_probs=241.6
Q ss_pred EecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhH-HHHHcCcCEEEeCCCC-cCCCCCCCCcCCCCcccCCCCC
Q psy15051 565 ILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKID-YLKELGVETLWLTPFY-SGPNGDIGYDISNHTEVGKDFG 642 (1065)
Q Consensus 565 i~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLd-YLk~LGvnaI~L~PI~-~~~~~~~GY~~~dy~~idp~~G 642 (1065)
|++++|.+++. .|+|+ ||+++|+ |||+| ||+||||||+ ++++.+|||++.||++|||+||
T Consensus 5 i~~~sf~d~~~--gg~~~---------------~i~~~ld~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~idp~~G 66 (504)
T 1r7a_A 5 VQLITYADRLG--DGTIK---------------SMTDILRTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVDERLG 66 (504)
T ss_dssp CEEEECSSSBS--SSSHH---------------HHHHHHHHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEECTTTC
T ss_pred EeeeeeEeccC--CCCHH---------------HHHHHHHHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcCcccC
Confidence 44566655442 47888 9999998 99999 9999999999 8888789999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhc
Q psy15051 643 TMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRA 722 (1065)
Q Consensus 643 t~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 722 (1065)
|++|||+||+
T Consensus 67 t~~df~~Lv~---------------------------------------------------------------------- 76 (504)
T 1r7a_A 67 SWDDVAELSK---------------------------------------------------------------------- 76 (504)
T ss_dssp CHHHHHHHHT----------------------------------------------------------------------
T ss_pred CHHHHHHHHh----------------------------------------------------------------------
Confidence 9999999963
Q ss_pred CcEEEEEeccCCCCCCchhhHhhhc--cCCCCCcceee-cC-CCCCCC------------CCCCCCCc------------
Q psy15051 723 GMKILVEFVPNHSSNKHDWFIKSAQ--KIDPYTNYYVW-KD-GLNGKP------------GTPPNNWK------------ 774 (1065)
Q Consensus 723 Gi~vIlDvV~NHts~~~~wf~~~~~--~~~~~~d~y~~-~~-~~dG~p------------~~~~~~W~------------ 774 (1065)
||+||+|+|+||++.+|+||.++.. ..++|.+||+. .+ ..+|.| ..+..+|.
T Consensus 77 Gi~VilD~V~NH~s~~~~~f~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~f 156 (504)
T 1r7a_A 77 THNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSF 156 (504)
T ss_dssp TSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBCBHHHHCTTCBCHHHHHTSCCSSSSCSEEEEEETTEEEEEECSS
T ss_pred CCEEEEEECCCcCCCcchHHHHHhhcCCCCccccceEeccccCcCCCCCcchhhhcCCCCCCCCCCceEcCCceEEECcc
Confidence 4577777888999999999998764 26789999973 31 111110 00011232
Q ss_pred -----cccCCCHHHHHHHHHHHHh----------------c--------------------------CCceEEEeecCCC
Q psy15051 775 -----HINITSREVMRSQKDVVQS----------------F--------------------------PLILMIITEAYSP 807 (1065)
Q Consensus 775 -----~ln~~n~~v~~~l~~~lk~----------------~--------------------------~~~~~ligE~~~~ 807 (1065)
.||+.||+|+++|.++++. . .+++++|||.|..
T Consensus 157 ~~~~pdLn~~np~Vr~~i~~~~~~W~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~igE~~~~ 236 (504)
T 1r7a_A 157 TPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHSY 236 (504)
T ss_dssp STTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEEETGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHTTCEEEECCCSC
T ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHHcCCCEEEEcccccccccCCCcccCchhHHHHHHHHHHHhCcCCcEEEEEeccc
Confidence 2999999999999998322 0 1368999999986
Q ss_pred ChHHHhhhccCCCCccccccccHHHHHH----hhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhh-------
Q psy15051 808 SLEKVAKYYGTGDTQGTHLSVNYEIMNK----FGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT------- 876 (1065)
Q Consensus 808 ~~~~~~~y~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s------- 876 (1065)
....... + ..++++|++.+... +.. .....+...+ ...+. ...+|++|||+.|+..
T Consensus 237 -~~~~~~~-~----~~~~~~~~f~~~~~~~~~~~~-~~~~~l~~~~----~~~p~--~~~nfl~nHD~~r~~~~~~~~~~ 303 (504)
T 1r7a_A 237 -YKKQVEI-A----SKVDRVYDFALPPLLLHALST-GHVEPVAHWT----DIRPN--NAVTVLDTHDGIGVIDIGSDQLD 303 (504)
T ss_dssp -HHHHHHH-H----TTSSEEEECSHHHHHHHHHHH-CCCHHHHHHH----HHSCS--SEEECSCCSSCBCSTTTSCCSSC
T ss_pred -ccccccc-C----CccceEECchhhhhhhhhhhc-cchHHHHHHH----HhCcc--ccceecccCCccccccccccccc
Confidence 2221111 1 23566666654432 221 1233333333 23343 3355999999988541
Q ss_pred -------------------------------------------------hcC--HHHHHHHHHHHHhCCCeEEEEccccc
Q psy15051 877 -------------------------------------------------RYS--PDLVDAMNMLTLLLPGTAVTFAGDEL 905 (1065)
Q Consensus 877 -------------------------------------------------~~~--~~~~kla~~ll~tlpGiP~IyyGdE~ 905 (1065)
.++ .++++++++++|++||+||||||||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~~~~~~~la~a~llt~pG~P~iy~GdE~ 383 (504)
T 1r7a_A 304 RSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGAL 383 (504)
T ss_dssp TTSCCSSCHHHHHHHHHHHHHHTTTHHHHHSGGGSBCSCSSSBCSCHHHHTTTCHHHHHHHHHHHHHSSSEEEEEHHHHT
T ss_pred ccccccCCHHHHHHHHHHHhhccccccccccccccccCCccccccchhhhccCcHHHHHHHHHHHHhCCCceEEEecccc
Confidence 222 25678899999999999999999999
Q ss_pred CccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHH
Q psy15051 906 GMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYK 985 (1065)
Q Consensus 906 G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r 985 (1065)
|+.+. +...+. ...+|+.+|.+|+|+... ......++++||
T Consensus 384 G~~~~---------~~~~~~-----~~~~r~~~r~~~~W~~~~-------------------------~~~~~~~~~~~~ 424 (504)
T 1r7a_A 384 AGKND---------MELLRK-----TNNGRDINRHYYSTAEID-------------------------ENLKRPVVKALN 424 (504)
T ss_dssp TCCCC---------HHHHHH-----HCBGGGGGCCCBCHHHHH-------------------------HHTTSHHHHHHH
T ss_pred ccCCC---------cccccc-----ccCCCCcccCCCChhHhh-------------------------hhhhhHHHHHHH
Confidence 98653 221111 123678899999997421 112356999999
Q ss_pred HHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCC
Q psy15051 986 DLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDC 1041 (1065)
Q Consensus 986 ~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~ 1041 (1065)
+|++|||++|+| .|+++.+..+++++||.|..+++.++||+|++...+.+.++..
T Consensus 425 ~Li~lRk~~~al-~G~~~~~~~~~~v~af~R~~~~~~~lv~~N~~~~~~~~n~~~~ 479 (504)
T 1r7a_A 425 ALAKFRNELDAF-DGTFSYTTDDDTSISFTWRGETSQATLTFEPKRGLGVDNTTPV 479 (504)
T ss_dssp HHHHHHHHCGGG-GSEEEEEEETTTEEEEEEECSSCEEEEEECGGGSCSTTCCSCC
T ss_pred HHHHHHhhCccc-cCceEEecCCCCEEEEEEECCCeEEEEEEECCCCeeEeecCcC
Confidence 999999999999 9999887777889999999888999999999988766666553
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=397.47 Aligned_cols=309 Identities=18% Similarity=0.191 Sum_probs=221.1
Q ss_pred ccceEEEEecccccCcCCCCCCC-CCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC--CCCCcCCCC
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGD-LRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG--DIGYDISNH 634 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gd-l~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~--~~GY~~~dy 634 (1065)
++.||||+|++.|.+ .|+ ++ ||+++|||||+||||+||||||++++++ +|||++.||
T Consensus 8 ~~~viyq~f~w~~~~-----~G~~~~---------------gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy 67 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPG-----GGIWWD---------------HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDY 67 (435)
T ss_dssp GTCCEEECCCTTCCC-----SSCHHH---------------HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEET
T ss_pred CCcEEEEEEEeccCC-----CCCHHH---------------HHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccc
Confidence 578999999999965 478 78 9999999999999999999999999875 699999999
Q ss_pred c---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 635 T---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 635 ~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+ +|||+|||++|||+||++|
T Consensus 68 ~~lg~~~~~~~id~~~Gt~~df~~lv~~~--------------------------------------------------- 96 (435)
T 1mxg_A 68 FDLGEYYQKGTVETRFGSKEELVRLIQTA--------------------------------------------------- 96 (435)
T ss_dssp TCSSCSCBTTBSSCSSCCHHHHHHHHHHH---------------------------------------------------
T ss_pred cccccccccCcCCCCCCCHHHHHHHHHHH---------------------------------------------------
Confidence 9 6999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---CCC-C------------CCC
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---NGK-P------------GTP 769 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---dG~-p------------~~~ 769 (1065)
|++||+||+|+|+||++..+.+... +.+++.|.... .|. | ...
T Consensus 97 --------------H~~Gi~VilD~V~NH~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 155 (435)
T 1mxg_A 97 --------------HAYGIKVIADVVINHRAGGDLEWNP-------FVGDYTWTDFSKVASGKYTANYLDFHPNELHCCD 155 (435)
T ss_dssp --------------HHTTCEEEEEECCSBCCCCEEEEET-------TTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCC
T ss_pred --------------HHCCCEEEEEECcccccCCCcccCC-------CCCccccccCCCccCCCCccccccCCCCCcCccC
Confidence 7777788888888888877654211 22222221100 000 0 000
Q ss_pred ---CCCCccccCCCHHHHHHHH----HHHH----------------hcC----------CceEEEeecCCCChHHHhhhc
Q psy15051 770 ---PNNWKHINITSREVMRSQK----DVVQ----------------SFP----------LILMIITEAYSPSLEKVAKYY 816 (1065)
Q Consensus 770 ---~~~W~~ln~~n~~v~~~l~----~~lk----------------~~~----------~~~~ligE~~~~~~~~~~~y~ 816 (1065)
......||+.||+|+++|. ++++ .+. .+++++||.|...++.+..|.
T Consensus 156 ~g~~~~~~dln~~np~V~~~l~~~~~~~~~~w~~~gvDGfR~Da~~~i~~~f~~~~~~~~~~~~vgE~~~~~~~~~~~~~ 235 (435)
T 1mxg_A 156 EGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWA 235 (435)
T ss_dssp SCCCTTSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHH
T ss_pred CCcccCccccCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEhhhhhhccHHHHHHHHHhcCceEEEccccCChHHHHhhh
Confidence 0011229999999996653 3311 111 157899999998776566666
Q ss_pred cCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhc-CCCCCcccccccCCChhhHhhhcCHHHHHHHHHHHHhCCC
Q psy15051 817 GTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKS-LPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPG 895 (1065)
Q Consensus 817 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~flenHD~~Rl~s~~~~~~~kla~~ll~tlpG 895 (1065)
..+....+|+.+...+.+.+... ....+...+...... ........+|++|||+.|+.++ ++|++++|++||
T Consensus 236 ~~~~~~~fd~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~------~~a~a~~lt~~G 308 (435)
T 1mxg_A 236 YESGAKVFDFPLYYKMDEAFDNN-NIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNK------YPAYAFILTYEG 308 (435)
T ss_dssp HHHTSEEECHHHHHHHHHHHTTT-CHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCH------HHHHHHHHHSSS
T ss_pred ccCCCceeehHHHHHHHHHHhcC-CHHHHHHHHhccccccccCHHHhhhhcccCCccchhhH------HHHHHHHHcCCC
Confidence 43223445666655666555432 333455544321111 1122334469999999998642 688899999999
Q ss_pred eEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhc
Q psy15051 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKK 975 (1065)
Q Consensus 896 iP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~ 975 (1065)
+|+||||+|+|.
T Consensus 309 ~P~iyyG~e~~~-------------------------------------------------------------------- 320 (435)
T 1mxg_A 309 QPVIFYRDFEEW-------------------------------------------------------------------- 320 (435)
T ss_dssp EEEEEHHHHHTT--------------------------------------------------------------------
T ss_pred ccEEEecccccc--------------------------------------------------------------------
Confidence 999999999741
Q ss_pred CCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCC--cEEEEEEECCCCcEEEEcC
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS--TSVYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~--~~vlVv~N~s~~~~~v~l~ 1039 (1065)
.+.+++++|+++|+ +|+.|+++.+..++++++|.|..++ +.++||+|++++.+++.+.
T Consensus 321 ---~~~~~i~~L~~~r~---al~~g~~~~~~~~~~~~~~~R~~~~~~~~~~vv~N~~~~~~~~~~~ 380 (435)
T 1mxg_A 321 ---LNKDKLINLIWIHD---HLAGGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVY 380 (435)
T ss_dssp ---SCHHHHHHHHHHHH---HTCCSCEEEEEECSSEEEEEECCCSSCCCEEEEEECSSSCEEEEEE
T ss_pred ---hHHHHHHHHHHHHH---HhccCCeEEEecCCCEEEEEEeCCCCCCEEEEEEeCCCCCeEEEEE
Confidence 13469999999997 6889999999888899999999653 6899999999888765554
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=414.37 Aligned_cols=362 Identities=16% Similarity=0.197 Sum_probs=247.3
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHh-hhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIE-KIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~-kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
++++|||+|+++|+. .++.|+|+ ||++ +|+|||+||||+||||||++++. .+|||++.||+
T Consensus 179 ~~~~IYE~hv~~~~~--~~~~Gt~~---------------~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~ 241 (755)
T 3aml_A 179 DAPRIYEAHVGMSGE--EPEVSTYR---------------EFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFF 241 (755)
T ss_dssp SSCEEEEEESTTCSS--SSSCCCHH---------------HHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEE
T ss_pred CCCEEEEEeeecccc--CCCCCCHH---------------HHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCC
Confidence 578999999999975 34578999 9987 79999999999999999999873 56999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|+|+|||++||++||++|
T Consensus 242 a~~~~~Gt~~df~~lv~~~------------------------------------------------------------- 260 (755)
T 3aml_A 242 AVSSRSGTPEDLKYLVDKA------------------------------------------------------------- 260 (755)
T ss_dssp EECGGGCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhc-cCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHH--
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ-KIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDV-- 790 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~-~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~-- 790 (1065)
|++||+||||+|+||++.++++...... +...+..||... .+|. ...|.. ||+.+|+|+++|.++
T Consensus 261 ----H~~Gi~VilD~V~NH~~~~~~~g~~~fd~~~~~~~~yf~~~--~~g~----~~~w~~~~lN~~~p~V~~~l~~~l~ 330 (755)
T 3aml_A 261 ----HSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTG--DRGY----HKLWDSRLFNYANWEVLRFLLSNLR 330 (755)
T ss_dssp ----HHTTCEEEEEECCSCBCCCTTTSGGGGCSSCCGGGSSBCCG--GGGE----ETTTTEECBCTTSHHHHHHHHHHHH
T ss_pred ----HHCCCEEEEEEeccccccccccchhccccCCCCCcceeecC--CCCc----cCCCCCceeccCCHHHHHHHHHHHH
Confidence 8888888888888999887754221111 112234455421 1122 224544 899999999888887
Q ss_pred ---------------HH-----------------------------------------hcCCceEEEeecCCCChHHHhh
Q psy15051 791 ---------------VQ-----------------------------------------SFPLILMIITEAYSPSLEKVAK 814 (1065)
Q Consensus 791 ---------------lk-----------------------------------------~~~~~~~ligE~~~~~~~~~~~ 814 (1065)
++ +..|++++|||.|...+.....
T Consensus 331 ~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~~~~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~lIaE~~~~~p~~~~~ 410 (755)
T 3aml_A 331 YWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRP 410 (755)
T ss_dssp HHHHHHCCCEEEETTHHHHHBTTTTTTCCCCSCGGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEEEECCSSCCTTTTSC
T ss_pred HHHHHcCCCEEEecchhhhhhcccCcccccccccccccccccchhHHHHHHHHHHHHHHHCCCeEEEEEccCCCccceee
Confidence 11 1134789999999775654444
Q ss_pred hccCCCCccccccccHHHH----HHhhc----CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhc--------
Q psy15051 815 YYGTGDTQGTHLSVNYEIM----NKFGA----TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRY-------- 878 (1065)
Q Consensus 815 y~~~~~~~~~d~~~~~~~~----~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~-------- 878 (1065)
+...+ .+||+.++..+. +.++. ......+...+... ..+. -.++|++|||+.|+.++.
T Consensus 411 ~~~gg--lgFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~--~~~~--~~vnf~~nHD~~r~g~~~~~f~l~d~ 484 (755)
T 3aml_A 411 VDEGG--VGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNR--RYTE--KCIAYAESHDQSIVGDKTIAFLLMDK 484 (755)
T ss_dssp GGGTS--CCCSEEECTTHHHHHHHHHHHCCGGGCCHHHHHHHHHCS--CTTS--CEEECSCCCCTTSCCCBCHHHHHHTT
T ss_pred ccCCC--ccccccccccchHHHHHHHhhCCccccCHHHHHHHHHhc--cCch--hheehhhcCCccccccccccccccch
Confidence 43322 567777664443 33332 22334444333321 2232 233599999998763321
Q ss_pred ------------------CHHHHHHHHHHHHhCCCeEEE-EcccccCccCCCCccCCCCCccccccccccccccccCCCC
Q psy15051 879 ------------------SPDLVDAMNMLTLLLPGTAVT-FAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSR 939 (1065)
Q Consensus 879 ------------------~~~~~kla~~ll~tlpGiP~I-yyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R 939 (1065)
+..++|++++++|++||+|+| |||+|+|+.+.. ..|..-+ .-.+ .+
T Consensus 485 ~~~~~~~~l~~~~~~~~~~~~~~k~a~~~llt~pG~P~lly~G~E~G~~~~~------~~p~~g~-------~~~~--~~ 549 (755)
T 3aml_A 485 EMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWI------DFPREGN-------NWSY--DK 549 (755)
T ss_dssp HHHHSCBSSSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETTGGGTCCSBC------CCCCGGG-------TTCC--TT
T ss_pred hhhhhhhhccccchhhhhhHHHHHHHHHHHHHCCCCEEEEeCchhcCCcCcc------cCcccCC-------CCCc--cc
Confidence 224688899999999999977 999999998621 1111000 0001 22
Q ss_pred CcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEE--ccCCcEEEEEEE
Q psy15051 940 VPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKIS--TPNNYVFILTRT 1017 (1065)
Q Consensus 940 ~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l--~~~~~viaf~R~ 1017 (1065)
..++|+.... .......+++++|+|++||+++|+|+.|..... ..+++|++|.|.
T Consensus 550 ~r~~W~~~~~-----------------------~~~~~~~l~~~~r~Li~lRk~~paL~~G~~~~~~~~~~~~vlaf~R~ 606 (755)
T 3aml_A 550 CRRQWSLVDT-----------------------DHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERG 606 (755)
T ss_dssp SSCCHHHHHC-----------------------TTBSHHHHHHHHHHHHHHHHHHCGGGCCCEEEEEEETTTTEEEEEET
T ss_pred ccCCcccccC-----------------------ccchhHHHHHHHHHHHHHHHhChhhcCCCEEEEeecCCCcEEEEEEC
Confidence 3366664220 001224699999999999999999998864322 346789999995
Q ss_pred cCCcEEEEEEECCCCc----EEEEcCCCccCCCcEEEEEccCCCcC
Q psy15051 1018 EGSTSVYLIINLNSRT----ETVDLSDCIENGGDVAIFTSSVNSGL 1059 (1065)
Q Consensus 1018 ~~~~~vlVv~N~s~~~----~~v~l~~~~~~~~~~~v~~~s~~~~~ 1059 (1065)
.+|||+|++..+ ..+.++. +|.++.+++|+...+
T Consensus 607 ----~llVv~N~s~~~~~~~~~i~vp~----~g~~~~vlnsd~~~~ 644 (755)
T 3aml_A 607 ----DLVFVFNFHPNKTYKGYKVGCDL----PGKYRVALDSDALVF 644 (755)
T ss_dssp ----TEEEEEECCSSCCEEEEEEEESS----CSEEEEEEETTSGGG
T ss_pred ----CEEEEEECCCCCccceeEECCCC----CCeEEEEEeCCcccc
Confidence 599999999863 3445443 588999999876655
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=405.94 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=238.3
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCcc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~~ 636 (1065)
++.||||++...+.+ +.|+++ ||+++|||||+||||+||||||+++++ .+|||++.||++
T Consensus 4 ~~~v~~q~F~W~~~~----~gG~~~---------------gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~ 64 (515)
T 1hvx_A 4 FNGTMMQYFEWYLPD----DGTLWT---------------KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYD 64 (515)
T ss_dssp CCCCEEECCCTTCCS----SSCHHH---------------HHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTC
T ss_pred CCceEEEEEEccCCC----CCCcHH---------------HHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccc
Confidence 467999999988764 358899 999999999999999999999999754 469999999997
Q ss_pred ---------cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 637 ---------VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 637 ---------idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
|||+|||++|||+||++|
T Consensus 65 l~~f~~~~~idp~~Gt~~dfk~Lv~~a----------------------------------------------------- 91 (515)
T 1hvx_A 65 LGEFNQKGAVRTKYGTKAQYLQAIQAA----------------------------------------------------- 91 (515)
T ss_dssp SSCSCBTTBSSCSSCCHHHHHHHHHHH-----------------------------------------------------
T ss_pred cccccccCccCCCCCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhc------------------------c-CCCCCc----ce
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQ------------------------K-IDPYTN----YY 756 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~------------------------~-~~~~~d----~y 756 (1065)
|++||+||+|+|+||++ ..|+||..+.. + .++|.+ ||
T Consensus 92 ------------H~~Gi~VilD~V~NH~~~~d~~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~pg~~~~y~~~~~~~~ 159 (515)
T 1hvx_A 92 ------------HAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWY 159 (515)
T ss_dssp ------------HHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGG
T ss_pred ------------HHCCCEEEEEEecCCccCCCcccceeEEEecCcccccccccccccccccccccCCCCCccccCccccc
Confidence 77777777777777775 35666654211 1 224543 44
Q ss_pred eecCCCCCCCC---------CCCCCCc----------------cccCCCHHHHHHHHHH---------------------
Q psy15051 757 VWKDGLNGKPG---------TPPNNWK----------------HINITSREVMRSQKDV--------------------- 790 (1065)
Q Consensus 757 ~~~~~~dG~p~---------~~~~~W~----------------~ln~~n~~v~~~l~~~--------------------- 790 (1065)
.+.......|. -....|. .||+.||+|+++|.++
T Consensus 160 ~~~~~d~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~dLn~~np~V~~~l~~~~~~w~~~~gvDGfRlDaa~~i 239 (515)
T 1hvx_A 160 HFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHI 239 (515)
T ss_dssp GEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGS
T ss_pred ccCCCCccccccccccccccCCCCCcccccccccCccccccCCccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEehhhhc
Confidence 43311000000 0012232 2999999999999987
Q ss_pred -----------HHh-cCCceEEEeecCCCChHHHhhhccCCC--CccccccccHHHHHHhhcCCChHHHHHHHHHHh-hc
Q psy15051 791 -----------VQS-FPLILMIITEAYSPSLEKVAKYYGTGD--TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL-KS 855 (1065)
Q Consensus 791 -----------lk~-~~~~~~ligE~~~~~~~~~~~y~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 855 (1065)
+++ ..++++++||.|..++..+..|.+... ..++|++++..+..++.... ...+.+.+.... ..
T Consensus 240 ~~~f~~~~~~~v~~~~~~~~~~igE~~~~~~~~~~~y~~~~~~~~~~fd~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 318 (515)
T 1hvx_A 240 KFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGG-TFDMRTLMTNTLMKD 318 (515)
T ss_dssp CTTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTT-CSCGGGTTTTCHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEEEecCCChHHHHHHHhccCCcceeecHHHHHHHHHHHhcCC-chhHHHHHHhhHhhc
Confidence 222 356899999999987776667765322 25677777777777664311 111222111111 11
Q ss_pred CCCCCcccccccCCChhhHhhhcCH---HHHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCcccccccccccc
Q psy15051 856 LPSGKWSSWMVGGHSITRIATRYSP---DLVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYL 931 (1065)
Q Consensus 856 ~~~~~~~~~flenHD~~Rl~s~~~~---~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~ 931 (1065)
.+. ...+|++|||+.|+.+..+. ...+++++++|++| |+|+||||+|+|+.+.. |
T Consensus 319 ~~~--~~~~fl~nHD~~r~~s~~~~~~~~~~~la~a~~l~~~~G~P~iyyG~E~G~~~~~-------d------------ 377 (515)
T 1hvx_A 319 QPT--LAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYN-------I------------ 377 (515)
T ss_dssp CGG--GEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGT-------B------------
T ss_pred CCc--cceEEeccccCCcchhcccchhhHHHHHHHHHHHhCCCCceEEEeccccCCCCCC-------C------------
Confidence 222 23469999999999887753 24678889999997 99999999999997521 1
Q ss_pred ccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcE
Q psy15051 932 KVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYV 1011 (1065)
Q Consensus 932 ~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~v 1011 (1065)
..+.++||+|++||++ ++.|++..+..++++
T Consensus 378 ----------------------------------------------~~~~~~~~~L~~lR~~---~~~g~~~~~~~~~~~ 408 (515)
T 1hvx_A 378 ----------------------------------------------PSLKSKIDPLLIARRD---YAYGTQHDYLDHSDI 408 (515)
T ss_dssp ----------------------------------------------CCCHHHHHHHHHHHHH---TCCSCEEEECCSSSE
T ss_pred ----------------------------------------------chHHHHHHHHHHHHHH---hccCCceeEecCCCE
Confidence 1255799999999998 478999888777789
Q ss_pred EEEEEEcCCc-----EEEEEEECCCCcEEEEcCCCccCCCcEEEEEc
Q psy15051 1012 FILTRTEGST-----SVYLIINLNSRTETVDLSDCIENGGDVAIFTS 1053 (1065)
Q Consensus 1012 iaf~R~~~~~-----~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~ 1053 (1065)
++|.|..+++ .++|+.|++...+++.++... ..+.++.+++
T Consensus 409 ~af~R~~~~~~~~~~~vvvi~N~~~~~~~~~~~~~~-~~~~~~dll~ 454 (515)
T 1hvx_A 409 IGWTREGVTEKPGSGLAALITDGPGGSKWMYVGKQH-AGKVFYDLTG 454 (515)
T ss_dssp EEEEECCBTTBTTCCEEEEEESSSCEEEEEECCGGG-TTCEEEETTS
T ss_pred EEEEEECCCCCCCCCEEEEEECCCCCcEEEEecCcC-CCCeEEECcC
Confidence 9999986543 455557888888888886421 2244555444
|
| >3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=412.01 Aligned_cols=325 Identities=16% Similarity=0.226 Sum_probs=211.6
Q ss_pred hhhhcc----cceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccccc
Q psy15051 25 KEWWKN----TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTW 100 (1065)
Q Consensus 25 ~~w~~~----~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (1065)
+..|++ +|||||||+||++++++|+|||+||+++|+||+ +|||+ ++|++ |++.++. +|
T Consensus 28 ~~~w~~~~~~~viY~i~~~~f~~~~~~~~G~~~g~~~~l~yl~-~lGv~---------------~i~l~-Pi~~~~~-~~ 89 (669)
T 3k8k_A 28 PDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLN-QLGVK---------------ALWLS-PIHPCMS-YH 89 (669)
T ss_dssp CCCCCSCCCSCCEEEECTTTSCCSSSSSSCCHHHHHTTHHHHH-TTTCS---------------EEEEC-CCSSBSS-TT
T ss_pred ChhhcccCcCcEEEEEEhHHhcCCCCCCCcCHHHHHHHHHHHH-HcCCC---------------EEEec-ccccCCC-CC
Confidence 445666 999999999999999999999999999999999 99999 45555 6666653 48
Q ss_pred CccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCc
Q psy15051 101 SRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSK 179 (1065)
Q Consensus 101 gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~ 179 (1065)
|| ++.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 90 gY--------~~~dy-------~~i~~~~Gt~~d~~~lv~~~h~~gi~vi--------~D~-------V~NH~~------ 133 (669)
T 3k8k_A 90 GY--------DVTDY-------TKVNPQLGTESDFDRLVTEAHNRGIKIY--------LDY-------VMNHTG------ 133 (669)
T ss_dssp CC--------SBSCT-------TSCCTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE------
T ss_pred CC--------Ccccc-------cccccccCCHHHHHHHHHHHHHcCCEEE--------EEE-------CcccCC------
Confidence 99 56665 667779999999999997 799999999 998 999986
Q ss_pred ccccCccccccCCC----cceeccccCccccc---CCCCC---C-------CCCCCccCCCCCCCC-----------CCC
Q psy15051 180 HQCQGQNFLFQGRP----VNLMSYVLGRELRK---HPPHS---T-------PHLPHVCCPSGLPST-----------SRP 231 (1065)
Q Consensus 180 ~~~~~~~~~f~~~~----~~~~~~~~~~~~d~---v~nh~---~-------~~~~~~~~~~~~~~~-----------~~~ 231 (1065)
.+|+||++.. ..+.+|+.+++... ...+. . ....|+....+ +. |..
T Consensus 134 ----~~~~wf~~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~f~g--~~~~~~~~~~~~~W~~ 207 (669)
T 3k8k_A 134 ----TAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDE--TAAVKGLLKFTLDWSN 207 (669)
T ss_dssp ----TTSHHHHHHHHCTTSTTGGGBCEESCHHHHHHTTCSTTSCSSGGGGCCGGGEEESCSC--CCCEEEEEEEEEECTT
T ss_pred ----CcCHHHHHHhhCCCCCccceeEECCCCcccccccccccccccccccCCCcccccccCC--Cccccccccccccccc
Confidence 7899998752 23344443321100 00000 0 00012211110 00 000
Q ss_pred CC------------CCCCCC----Cccc----------------------------ccccccccCCcchh----------
Q psy15051 232 DI------------EGEGPS----SEKY----------------------------WGDILERTVSSNSL---------- 257 (1065)
Q Consensus 232 ~~------------~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~---------- 257 (1065)
.- +-..|. .+.| |+-....+....|-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (669)
T 3k8k_A 208 APSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWPSGTKYGASSS 287 (669)
T ss_dssp TTSCEEEEEECSSCCCCCCCCCCTTCCEEEETTTEEEECEEEETTEEEEEEEEEESSCEEEESCCSSSCCTTCEEBBSST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 000000 0000 00000000000000
Q ss_pred -hhcc--------------ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCC-CCCCCCC-------CCcccccc
Q psy15051 258 -QALQ--------------RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVH-QPHCAVP-------NPKVLMVP 314 (1065)
Q Consensus 258 -~~~~--------------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-q~dln~~-------np~v~~~~ 314 (1065)
+.+. .....+.+..+|+|.|. .. |||||++ ||+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~-------------------~~~qPDLN~~~~~~~~~Np~V---- 344 (669)
T 3k8k_A 288 SEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFC-------------------TDWFADLNYGPVDQAGESPAY---- 344 (669)
T ss_dssp TCCBCTTSCEECBCSSSCBCBCBTTCCCCEEECTTS-------------------CTTEEEBCCCSGGGGGGCHHH----
T ss_pred ccccccccccccccccccccccccccccceeeeccc-------------------cccCCccCCCCCccCCCCHHH----
Confidence 0000 00001124455689998 68 9999999 9999
Q ss_pred cccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccc
Q psy15051 315 NADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIY 394 (1065)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~ 394 (1065)
++|+++++||+++||||||||||++|.|+.
T Consensus 345 ------------------------~~l~dvl~~Wl~~GVDGFRlDaa~~i~k~~-------------------------- 374 (669)
T 3k8k_A 345 ------------------------QAIADAAKGWIARGVDGLRLDAVKHIYHSE-------------------------- 374 (669)
T ss_dssp ------------------------HHHHHHHHHHHTTTCCEEEETTGGGSSSCS--------------------------
T ss_pred ------------------------HHHHHHHHHHHHCCCCEEEEechhhhhhcc--------------------------
Confidence 479999999999999999999999998832
Q ss_pred cCCchhHHHHHHHHHHHHHh-------hCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhh
Q psy15051 395 TIDQPETYEMLYKWRTLVEK-------FGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLL 467 (1065)
Q Consensus 395 ~~~~~~~~~~~~~~r~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~ 467 (1065)
++++.++|+++||+.+.+ +|+..+|||........ ..++ .+++|+|+|++.
T Consensus 375 --~~~~~~~f~~e~~~~v~~~~~~~g~~pd~~lvGEv~~~~~~~---------------~~y~-----~~l~~vfnF~~~ 432 (669)
T 3k8k_A 375 --TSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEYDKV---------------APYY-----KGLPALFEFSFW 432 (669)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEEEECCCSCHHHH---------------GGGG-----GTCSEEECHHHH
T ss_pred --CCCccHHHHHHHHHHHHHHhhhcccCCCeEEEeccCCCHHHH---------------HHHh-----ccCCceeccHHH
Confidence 356889999999998887 47889999985422211 1111 246899999886
Q ss_pred hHH--------------HHHHHHhcCcCC--cc-cchhhcccCccccchhhhhh
Q psy15051 468 HQV--------------VSHFIYCGIVDD--TS-ALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 468 ~~~--------------~~~~Wq~~m~~~--~~-~~~~~~nhd~~r~~sr~~~~ 504 (1065)
..+ .+..|+..++.. .+ ..++++|||++|.+||++++
T Consensus 433 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Fl~NHD~~R~~s~~g~d 486 (669)
T 3k8k_A 433 YRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKS 486 (669)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHTTCTTCEEECCSCCTTSCCHHHHTTTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcccceeeeeccCCCCCccccccCCC
Confidence 421 456677666532 22 55677999999999999865
|
| >1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=396.20 Aligned_cols=279 Identities=20% Similarity=0.336 Sum_probs=197.6
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhh--------HhhhCCCCcCCCCCCCCCcceeeecccCcccccccccc
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYL--------ELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTW 100 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl--------~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (1065)
+++||||||||||++++++|+|||+||++||||| | +|||| ++|++ |++.++ .+|
T Consensus 3 ~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~LdyL~~~~~~~~~-~LGv~---------------~I~L~-Pi~~~~-~~~ 64 (488)
T 1wza_A 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIA-DLGVN---------------GIWLM-PIFKSP-SYH 64 (488)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCS-SCCCS---------------EEEEC-CCEECS-SSS
T ss_pred CCcEEEEEEChhhcCCCCCCcCCHHHHHHhhhhhhccccchhh-hcCcc---------------EEEEC-CcccCC-CCC
Confidence 5799999999999999999999999999999999 9 99999 55555 666665 359
Q ss_pred CccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCc
Q psy15051 101 SRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSK 179 (1065)
Q Consensus 101 gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~ 179 (1065)
|| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 65 GY--------d~~dy-------~~idp~~Gt~~d~~~Lv~~aH~~Gi~Vi--------lD~-------V~NH~s------ 108 (488)
T 1wza_A 65 GY--------DVTDY-------YKINPDYGTLEDFHKLVEAAHQRGIKVI--------IDL-------PINHTS------ 108 (488)
T ss_dssp CC--------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEC-------CCSBCC------
T ss_pred Cc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccc------
Confidence 99 66666 677779999999999997 799999999 887 999976
Q ss_pred ccccCccccccCCC----cceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcc
Q psy15051 180 HQCQGQNFLFQGRP----VNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSN 255 (1065)
Q Consensus 180 ~~~~~~~~~f~~~~----~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1065)
.+|+||++.. ..+.+|+.++.-+ ++ |- .....| .+.
T Consensus 109 ----~~~~~f~~~~~~~~~~y~d~y~~~~~~--~~-------~~----------~~~~~~-----------------~~~ 148 (488)
T 1wza_A 109 ----ERHPWFLKASRDKNSEYRDYYVWAGPD--TD-------TK----------ETKLDG-----------------GRV 148 (488)
T ss_dssp ----TTSHHHHHHHTCTTCTTGGGBCBCCSC--CC-------CC----------BCSSSC-----------------BCS
T ss_pred ----CccHhhhhhhcCCCCCCcCeeecCCCC--CC-------CC----------CccccC-----------------CCc
Confidence 6788887521 1122222111100 00 00 000000 011
Q ss_pred hhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhh
Q psy15051 256 SLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFC 335 (1065)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
|.....++| ++.|. ..|||||++||+||
T Consensus 149 w~~~~~~~~---------~~~f~-------------------~~~pdln~~np~Vr------------------------ 176 (488)
T 1wza_A 149 WHYSPTGMY---------YGYFW-------------------SGMPDLNYNNPEVQ------------------------ 176 (488)
T ss_dssp EEEETTEEE---------ECSSC-------------------TTSCBBCTTSHHHH------------------------
T ss_pred ccccCCceE---------EeccC-------------------CCCcccccCCHHHH------------------------
Confidence 111112344 78888 79999999999997
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 336 YEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 336 ~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
++|+++++||+++||||||+|||++|.++ .+++++++|+++||+.+.+.
T Consensus 177 ---~~i~~~~~~Wl~~gvDGfR~Da~~~i~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 225 (488)
T 1wza_A 177 ---EKVIGIAKYWLKQGVDGFRLDGAMHIFPP----------------------------AQYDKNFTWWEKFRQEIEEV 225 (488)
T ss_dssp ---HHHHHHHHHHHHTTCCEEEEECCCTTSCG----------------------------GGTTHHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHHcCCCChhHhhHhhhccc----------------------------cCcchHHHHHHHHHHHHhhc
Confidence 88999999999999999999999999873 14578899999999988654
Q ss_pred -CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------------HHHHHHhcCc
Q psy15051 416 -GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------------VSHFIYCGIV 480 (1065)
Q Consensus 416 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------------~~~~Wq~~m~ 480 (1065)
| ..+|||.... ...+. .|++ . .++++|+|++...+ .+..|+..++
T Consensus 226 ~p-~~~vgE~~~~-~~~~~------~~~~---------~---~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 285 (488)
T 1wza_A 226 KP-VYLVGEVWDI-SETVA------PYFK---------Y---GFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYD 285 (488)
T ss_dssp SC-CEEEEECCSC-HHHHG------GGGT---------T---TCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEEeCCC-HHHHH------HHHh---------c---CCCEEECHHHHHHHHHhhccCCHHHHHHHHHHHHHhhh
Confidence 8 8899998653 22111 1211 1 15688999865432 2334444333
Q ss_pred -----CCcccchhhcccCccccchhhhhh
Q psy15051 481 -----DDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 481 -----~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...+...+..|||++|..++++.+
T Consensus 286 ~~~~~~~~~~~~fl~nHD~~R~~~~~~~~ 314 (488)
T 1wza_A 286 REVGFGNYIDAPFLTNHDQNRILDQLGQD 314 (488)
T ss_dssp HHTCTTSCCCBCBSCCTTSCCHHHHTTTC
T ss_pred cccccccceeeeeccCCCcchhhhhhcCC
Confidence 122334566999999999999765
|
| >3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=409.30 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=201.1
Q ss_pred chhhhcc--cceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc--cc
Q psy15051 24 QKEWWKN--TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV--KT 99 (1065)
Q Consensus 24 ~~~w~~~--~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~ 99 (1065)
.++||++ +|||||||++|. |||+||+++|+||| +|||| ++|++ |++.++. .+
T Consensus 82 ~~~W~~~~~~viY~i~~~~F~-------Gdl~gi~~~LdyL~-~LGv~---------------~I~L~-Pi~~~~~~~~~ 137 (644)
T 3czg_A 82 HAGWFGQPHMLGYSAYADRFA-------GTLQGVAERVPYLQ-ELGVR---------------YLHLL-PFLRARAGDND 137 (644)
T ss_dssp CTTGGGSTTCCEEEECHHHHH-------SSHHHHHHTHHHHH-HHTCC---------------EEEEC-CCBCBCSSCCT
T ss_pred CCccccCCCcEEEEEechhhC-------CCHHHHHHHHHHHH-HcCCC---------------EEEeC-CCCcCCCCCCC
Confidence 4689998 899999999996 89999999999999 99999 55555 6666665 58
Q ss_pred cCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccC
Q psy15051 100 WSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDS 178 (1065)
Q Consensus 100 ~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~ 178 (1065)
||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 138 ~GY--------~~~dy-------~~vdp~~Gt~~df~~Lv~~aH~~GI~Vi--------lD~-------V~NH~s----- 182 (644)
T 3czg_A 138 GGF--------AVSDY-------GQVEPSLGSNDDLVALTSRLREAGISLC--------ADF-------VLNHTA----- 182 (644)
T ss_dssp TTT--------SBSCT-------TSBCGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE-----
T ss_pred CCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------ecCCcc-----
Confidence 999 66666 677779999999999997 799999999 887 888876
Q ss_pred cccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchh
Q psy15051 179 KHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSL 257 (1065)
Q Consensus 179 ~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 257 (1065)
.+|+||+.... |+.++.++| |.+.. ..+++|.
T Consensus 183 -----~~~~wf~~~~~----------------------------------------~~~~y~d~y~~~~~~--~~p~~~~ 215 (644)
T 3czg_A 183 -----DDHAWAQAARA----------------------------------------GDARYLDYYHHFADR--TVPDRYE 215 (644)
T ss_dssp -----TTSHHHHHHHT----------------------------------------TCHHHHTTBCEESSS--HHHHHHH
T ss_pred -----cchhhHHHHhc----------------------------------------CCCcccCceecCCCC--CCCcchh
Confidence 66777764211 111222222 21100 0000110
Q ss_pred hhccccC---------CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCcccc
Q psy15051 258 QALQRVY---------PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTV 328 (1065)
Q Consensus 258 ~~~~~~~---------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~ 328 (1065)
......+ ..+...++++|.|. ..|||||++||+|+
T Consensus 216 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~-------------------~~~pdLN~~np~V~----------------- 259 (644)
T 3czg_A 216 ATLGQVFPHTAPGNFTWVDDTAQWMWTTFY-------------------PYQWDLNWSNPAVF----------------- 259 (644)
T ss_dssp HHCCCC------CCEEEETTTTEEEECSSS-------------------TTEEEBCTTSHHHH-----------------
T ss_pred hcccccCCCCCCCCccccCCCCceEecccc-------------------cCCCcCCCCCHHHH-----------------
Confidence 0000000 00112344599998 79999999999997
Q ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHH
Q psy15051 329 VDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKW 408 (1065)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 408 (1065)
++|+++++||+++||||||+|||++|+|+.+ ..|.++|++|+++++|
T Consensus 260 ----------~~i~~~~~~wl~~GvDGfRlDa~~~i~~~~~-----------------------~~~~n~p~~~~~l~~~ 306 (644)
T 3czg_A 260 ----------GDMALAMLRLANLGVEAFRLDSTAYLWKRIG-----------------------TDCMNQSEAHTLLVAL 306 (644)
T ss_dssp ----------HHHHHHHHHHHHTTEEEEEEETGGGSCCCTT-----------------------SCSSSCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCCEEEEecccccccccC-----------------------CcccCcHHHHHHHHHH
Confidence 8899999999999999999999999998532 1288999999999999
Q ss_pred HHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHHHh
Q psy15051 409 RTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFIYC 477 (1065)
Q Consensus 409 r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~Wq~ 477 (1065)
|++++++ |+..+|||.+....+... |+|.+ ..| .++++|+|||.+.... .+..|..
T Consensus 307 r~~~~~~~p~~~ligE~~~~~~~~~~-------y~~~~-~~~-----~~~~~~~ynf~~~~~~~~~~~~~~~~~l~~~l~ 373 (644)
T 3czg_A 307 RAVTDIVAPAVVMKAEAIVPMTQLPP-------YFGSG-VDE-----GHECHLAYHSTLMAAGWSALALQRGDILHNVIA 373 (644)
T ss_dssp HHHHHHHCTTCEEEEECCSCGGGSGG-------GGCCG-GGT-----TSSCSEEECHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEecCCHHHHHH-------hhCCC-ccc-----ccccceeechHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999986 899999999876555433 33310 000 2578999999987543 2455555
Q ss_pred cCc---CCcccchhhcccCc
Q psy15051 478 GIV---DDTSALMVMNERRL 494 (1065)
Q Consensus 478 ~m~---~~~~~~~~~~nhd~ 494 (1065)
.+. .+..+..++.|||.
T Consensus 374 ~~~~~~~~~~~~nfl~nHD~ 393 (644)
T 3czg_A 374 HSPPLPRHCAWLSYVRCHDD 393 (644)
T ss_dssp TCCCCCTTCEEEEESCCSSC
T ss_pred hhhccCCCCeeeEEeccCcc
Confidence 443 22233345699995
|
| >1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=405.17 Aligned_cols=279 Identities=14% Similarity=0.140 Sum_probs=199.8
Q ss_pred cCchhhhcc--cceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc--
Q psy15051 22 CNQKEWWKN--TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-- 97 (1065)
Q Consensus 22 ~~~~~w~~~--~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-- 97 (1065)
...++||++ +|||||||++|. |||+||+++|+||| +|||| ++|++ |++.++.
T Consensus 87 ~~~~~W~~~~~~viY~~~~~~f~-------Gdl~gi~~~LdyL~-~LGv~---------------~I~L~-Pi~~~~~~~ 142 (628)
T 1g5a_A 87 ENNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQ-ELGLT---------------YLHLM-PLFKCPEGK 142 (628)
T ss_dssp HTCGGGGGCTTCCEEEECHHHHH-------SSHHHHHTTHHHHH-HHTCS---------------EEEEC-CCBCCCSSC
T ss_pred ccCcccccCCCcEEEEEchhhhC-------CCHHHHHHHHHHHH-HcCCC---------------EEEeC-CCCCCCCCC
Confidence 345689987 799999999995 99999999999999 99999 45555 6666655
Q ss_pred cccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccc
Q psy15051 98 KTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLT 176 (1065)
Q Consensus 98 ~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~ 176 (1065)
.+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 143 ~~~GY--------~v~dy-------~~vdp~~Gt~~d~~~Lv~~ah~~GI~Vi--------lD~-------V~NH~s--- 189 (628)
T 1g5a_A 143 SDGGY--------AVSSY-------RDVNPALGTIGDLREVIAALHEAGISAV--------VDF-------IFNHTS--- 189 (628)
T ss_dssp STTTT--------SCSCS-------SSBCTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE---
T ss_pred CCCCc--------CCccc-------CCcCccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ecCccc---
Confidence 57899 66666 677779999999999997 799999999 887 888865
Q ss_pred cCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcc
Q psy15051 177 DSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSN 255 (1065)
Q Consensus 177 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 255 (1065)
.+|+||+... .|+.++.++| |.+.. ..|++
T Consensus 190 -------~~~~wf~~~~----------------------------------------~g~~~y~d~y~~~~~~--~~P~~ 220 (628)
T 1g5a_A 190 -------NEHEWAQRCA----------------------------------------AGDPLFDNFYYIFPDR--RMPDQ 220 (628)
T ss_dssp -------TTSHHHHHHH----------------------------------------TTCGGGTTSBCEESSS--HHHHH
T ss_pred -------ccchhHHHHh----------------------------------------cCCCccccccccCCCC--CCccc
Confidence 6667775421 1122223333 21110 00011
Q ss_pred hhhhccccC---------CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCcc
Q psy15051 256 SLQALQRVY---------PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQT 326 (1065)
Q Consensus 256 ~~~~~~~~~---------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~ 326 (1065)
|.+.....+ ..+. ..+++|.|. ..|||||++||+|+
T Consensus 221 ~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~f~-------------------~~~pdLN~~np~V~--------------- 265 (628)
T 1g5a_A 221 YDRTLREIFPDQHPGGFSQLED-GRWVWTTFN-------------------SFQWDLNYSNPWVF--------------- 265 (628)
T ss_dssp HTTTCCCSSTTTCSTTEEECTT-SCEEECSSS-------------------TTEEEBCTTSHHHH---------------
T ss_pred ccccccccCCCCCCCccccCCC-CCEEeccCC-------------------CCCCccCCCCHHHH---------------
Confidence 100000000 0111 355689998 79999999999997
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHH
Q psy15051 327 TVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLY 406 (1065)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 406 (1065)
++|+++++||+++||||||+|||++|+|+.+ ..|.++|++|++++
T Consensus 266 ------------~~i~~~l~~w~~~GvDGfRlDa~~~i~k~~g-----------------------~~~~~~p~~~~~~~ 310 (628)
T 1g5a_A 266 ------------RAMAGEMLFLANLGVDILRMDAVAFIWKQMG-----------------------TSCENLPQAHALIR 310 (628)
T ss_dssp ------------HHHHHHHHHHHTTTCSEEEETTGGGSCCCTT-----------------------SCSSSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHcCCCEEEEecccccccccC-----------------------ccccCcHHHHHHHH
Confidence 8899999999999999999999999998532 12789999999999
Q ss_pred HHHHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHH
Q psy15051 407 KWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFI 475 (1065)
Q Consensus 407 ~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~W 475 (1065)
+||+++++. |+..+|||......+...++ +. .+++|+|+|.+.... .+..|
T Consensus 311 ~~r~~~~~~~p~~~~igE~~~~~~~~~~y~----------------~~--~~~~~~y~f~l~~~~~~~~~~~~~~~l~~~ 372 (628)
T 1g5a_A 311 AFNAVMRIAAPAVFFKSEAIVHPDQVVQYI----------------GQ--DECQIGYNPLQMALLWNTLATREVNLLHQA 372 (628)
T ss_dssp HHHHHHHHHCTTCEEEECCCSCHHHHGGGB----------------ST--TSBSEEECHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEecCCHHHHHHhh----------------CC--CCcceeecHHHHHHHHHhhccCCHHHHHHH
Confidence 999999876 99999999986554433322 21 357999999987543 24455
Q ss_pred HhcCc---CCcccchhhcccCc
Q psy15051 476 YCGIV---DDTSALMVMNERRL 494 (1065)
Q Consensus 476 q~~m~---~~~~~~~~~~nhd~ 494 (1065)
...+. .+..+..+..|||.
T Consensus 373 l~~~~~~~~~~~~~nfl~nHD~ 394 (628)
T 1g5a_A 373 LTYRHNLPEHTAWVNYVRSHDD 394 (628)
T ss_dssp HHHSCCCCTTCEEEEESCCSSC
T ss_pred HHHhhcccCCCeeEeehhcccc
Confidence 54443 22233345699995
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=385.87 Aligned_cols=307 Identities=13% Similarity=0.139 Sum_probs=217.5
Q ss_pred cccceEEEEecccccCcCCCCCCCC-CCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC--------C-CCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDL-RGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG--------P-NGD 626 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl-~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~--------~-~~~ 626 (1065)
-++.||||++...+.+. .+||| + ||+++|||||+||||+||||||+++ + ..+
T Consensus 14 ~~~~vi~q~F~w~~~~~---~gGd~~~---------------gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~ 75 (527)
T 1gcy_A 14 GGDEIILQGFHWNVVRE---APNDWYN---------------ILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGG 75 (527)
T ss_dssp GGCCCEEECCCTTHHHH---STTTHHH---------------HHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCC
T ss_pred CCCcEEEEEEEcCCCcc---cCCcHHH---------------HHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCC
Confidence 45789999997665432 24888 8 9999999999999999999999954 2 256
Q ss_pred CCCcCCCCcccC--CCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCC
Q psy15051 627 IGYDISNHTEVG--KDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704 (1065)
Q Consensus 627 ~GY~~~dy~~id--p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1065)
|||+ |++|| |+|||++|||+||++|
T Consensus 76 ~GY~---~~~id~~p~~Gt~~dfk~Lv~~a-------------------------------------------------- 102 (527)
T 1gcy_A 76 EGYF---WHDFNKNGRYGSDAQLRQAASAL-------------------------------------------------- 102 (527)
T ss_dssp SSTT---CSSSCSCSSSCCHHHHHHHHHHH--------------------------------------------------
T ss_pred CCcc---cccCCCCCCCCCHHHHHHHHHHH--------------------------------------------------
Confidence 9999 99999 9999999999999999
Q ss_pred CCCccCcccchhhhhhhcCcEEEEEeccCCCCCCch---hhHhhhccCCCCCcceeecCC-CCCCCCCCC---CCC-cc-
Q psy15051 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD---WFIKSAQKIDPYTNYYVWKDG-LNGKPGTPP---NNW-KH- 775 (1065)
Q Consensus 705 ~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~---wf~~~~~~~~~~~d~y~~~~~-~dG~p~~~~---~~W-~~- 775 (1065)
|++||+||+|+|+||++.+|+ |+ .++.+||+.... .++.-.... ..| ..
T Consensus 103 ---------------H~~GI~VilD~V~NHt~~~~~~~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~f~~~~ 160 (527)
T 1gcy_A 103 ---------------GGAGVKVLYDVVPNHMNRGYPDKEIN-------LPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD 160 (527)
T ss_dssp ---------------HHTTCEEEEEECCSBCCTTCSSCSCC-------CCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred ---------------HHCCCEEEEEEeecCcCCCCCCcccc-------CCCcchhcccccCCCCCcccCcccCccccccC
Confidence 888889999999999999988 76 235566653211 010000000 011 11
Q ss_pred --ccCCCHHHHHHHHHHHHh-----------------------------cCCceEEEeecCCCChHH-HhhhccCCC--C
Q psy15051 776 --INITSREVMRSQKDVVQS-----------------------------FPLILMIITEAYSPSLEK-VAKYYGTGD--T 821 (1065)
Q Consensus 776 --ln~~n~~v~~~l~~~lk~-----------------------------~~~~~~ligE~~~~~~~~-~~~y~~~~~--~ 821 (1065)
||+.||+|+++|.++++. .+.+++++||.|....+. ...|.+.+. .
T Consensus 161 ~dLn~~np~Vr~~i~~~~~~w~~~~gvDGfRlDa~~~i~~~f~~~~~~~~~~p~~~vgE~~~~~~~~~~~~y~~~~~~~~ 240 (527)
T 1gcy_A 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ 240 (527)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHHHHHHHHhcCCceEEEEecCCCCcccccccccccchhh
Confidence 999999999999998322 221378999999874321 123333211 0
Q ss_pred -------ccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCC--CCCcccccccCCChhhHhhhcC--------HHHHH
Q psy15051 822 -------QGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP--SGKWSSWMVGGHSITRIATRYS--------PDLVD 884 (1065)
Q Consensus 822 -------~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~flenHD~~Rl~s~~~--------~~~~k 884 (1065)
..++..|++.+...+..... .... + ....... ......+|++|||+.|+.++++ .++++
T Consensus 241 ~~~~~~~~~~~~~fdf~~~~~l~~~~~--~~~~-l-~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~g~~~~~~~~~~~~ 316 (527)
T 1gcy_A 241 IIKDWSDRAKCPVFDFALKERMQNGSI--ADWK-H-GLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIR 316 (527)
T ss_dssp HHHHHHHHHTSCEECHHHHHHHHHSCG--GGGG-G-SGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHH
T ss_pred HHHHHhhccCCceechHHHHHHHHHHH--Hhhh-h-hhcCCccccChhhceEEEeCCCCCCcccccCccccccCChhHHH
Confidence 01344566655544432221 1100 0 0000000 0123356999999999987653 45789
Q ss_pred HHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCC
Q psy15051 885 AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964 (1065)
Q Consensus 885 la~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~ 964 (1065)
++++++|++||+|+||||+|++ |
T Consensus 317 ~a~a~~lt~~G~P~iy~G~E~~-------------------------------------W-------------------- 339 (527)
T 1gcy_A 317 QAYAYILTSPGTPVVYWDHMYD-------------------------------------W-------------------- 339 (527)
T ss_dssp HHHHHHHHSSSEEEEEHHHHHT-------------------------------------S--------------------
T ss_pred HHHHHHhCCCCcceeecccccC-------------------------------------C--------------------
Confidence 9999999999999999999951 1
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCC
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSR 1032 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~ 1032 (1065)
+++++||+|++|||++|+|+.|+++.+..++++++|.|.. +++++|++|++..
T Consensus 340 --------------~l~~~~~~Li~lRk~~~al~~g~~~~~~~~~~v~a~~r~~-~~~~lv~~N~~~~ 392 (527)
T 1gcy_A 340 --------------GYGDFIRQLIQVRRAAGVRADSAISFHSGYSGLVATVSGS-QQTLVVALNSDLG 392 (527)
T ss_dssp --------------SCHHHHHHHHHHHHHHTCCTTCEEEECTTSSSEEEEEECS-SCEEEEEESCCCC
T ss_pred --------------hHHHHHHHHHHHHHhChhhcCCceEEEecCCCEEEEEecC-CCeEEEEECCCCC
Confidence 1568999999999999999999999988888899999964 4689999999864
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=377.65 Aligned_cols=331 Identities=16% Similarity=0.182 Sum_probs=212.8
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhh-hHHHHHcCcCEEEeCCCCcCCCCC-----C
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVETLWLTPFYSGPNGD-----I 627 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~k-LdYLk~LGvnaI~L~PI~~~~~~~-----~ 627 (1065)
..|-.+.||+|+|...| + ||+++ |||||+||||+|||+||+++++.+ |
T Consensus 5 ~~~~~~~~i~~~F~w~~-----------~---------------gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~ 58 (471)
T 1jae_A 5 NFASGRNSIVHLFEWKW-----------N---------------DIADECERFLQPQGFGGVQISPPNEYLVADGRPWWE 58 (471)
T ss_dssp CCCTTCEEEEEETTCCH-----------H---------------HHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGG
T ss_pred CCCCCCCeEEEEecCCH-----------H---------------HHHHHHHHHHHHcCCCEEEeCccccccCCCCCCccc
Confidence 34556889999988665 5 99999 699999999999999999997642 6
Q ss_pred CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 628 GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 628 GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
||++.|| +|||+|||++|||+||++|
T Consensus 59 gYd~~dy-~idp~~Gt~~d~~~lv~~~----------------------------------------------------- 84 (471)
T 1jae_A 59 RYQPVSY-IINTRSGDESAFTDMTRRC----------------------------------------------------- 84 (471)
T ss_dssp GGSBCCS-CSEETTEEHHHHHHHHHHH-----------------------------------------------------
T ss_pred ccccccc-cccCCCCCHHHHHHHHHHH-----------------------------------------------------
Confidence 9999996 9999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCCCCc------hhhHhhhcc--CCCCCcceeecCCCCCCCCCCCCCCc-----
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSSNKH------DWFIKSAQK--IDPYTNYYVWKDGLNGKPGTPPNNWK----- 774 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~------~wf~~~~~~--~~~~~d~y~~~~~~dG~p~~~~~~W~----- 774 (1065)
|++||+||+|+|+||++..| .++...... ..+|.. ..+... . ....|.
T Consensus 85 ------------h~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~f~~~--~----~i~~~~~~~~~ 145 (471)
T 1jae_A 85 ------------NDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGS-GDFHSP--C----EVNNYQDADNV 145 (471)
T ss_dssp ------------HHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCG-GGBCCC--C----BCCCTTCHHHH
T ss_pred ------------HHCCCEEEEEEecccccCCCCcCCCCCccCccCCcCCCCCCCH-hHcCCC--C----CccCCCChhhc
Confidence 67777777777777777665 222110000 001110 111100 0 001221
Q ss_pred ---------cccCCCHHHHHHHHHHHHh-------------------------------cC--------CceEEEeecCC
Q psy15051 775 ---------HINITSREVMRSQKDVVQS-------------------------------FP--------LILMIITEAYS 806 (1065)
Q Consensus 775 ---------~ln~~n~~v~~~l~~~lk~-------------------------------~~--------~~~~ligE~~~ 806 (1065)
.||+.||+|+++|.++++. .+ ++++++||.|.
T Consensus 146 ~~~~~~~~pdLn~~np~V~~~i~~~~~~w~~~gvDGfRlDa~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~ 225 (471)
T 1jae_A 146 RNCELVGLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVID 225 (471)
T ss_dssp HHSBBTTBCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCC
T ss_pred cccccCCCCccCcCCHHHHHHHHHHHHHHHHcCCCEEEeechhcCCHHHHHHHHHHHhhhccccccccCCCceEEEeeec
Confidence 1999999999999998322 11 35799999998
Q ss_pred CChHHHh--hhccCCCCccccccccHHHH----HHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHh--hhc
Q psy15051 807 PSLEKVA--KYYGTGDTQGTHLSVNYEIM----NKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIA--TRY 878 (1065)
Q Consensus 807 ~~~~~~~--~y~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~--s~~ 878 (1065)
...+.+. .|. +++.++++.+. ..+.+......+...... ....+ ....++|++|||+.|+. +.+
T Consensus 226 ~~~~~~~~~~y~------~~~~~~~f~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~fl~nHD~~R~~g~~~~ 297 (471)
T 1jae_A 226 LGGEAISKNEYT------GFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPE-WGLLE-GLDAVVFVDNHDNQRTGGSQIL 297 (471)
T ss_dssp CSSSSCCGGGTT------TSSEEECHHHHHHHHHHHTTTSCGGGGGGCSGG-GTCCC-GGGEEECSCCTTHHHHSCTTCC
T ss_pred CCCcccchhhhc------CCCceeccHHHHHHHHHHhCCCcHHHHHHhhhh-cCCCC-hhheeEEeecCCCCCCCCCccc
Confidence 6433222 221 24445555444 444333233333221111 01122 23445699999999997 444
Q ss_pred C---HHHHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCC
Q psy15051 879 S---PDLVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954 (1065)
Q Consensus 879 ~---~~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~ 954 (1065)
. .+++++|++++|++| |+|+||||||+|+.+. ++|.. +++..+.| +|+.
T Consensus 298 ~~~~~~~~~la~a~llt~pyG~P~iy~G~E~g~~~~-------~~p~~-----------~~~~~~~p---------~f~~ 350 (471)
T 1jae_A 298 TYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDNDQ-------GPPQD-----------GSGNLISP---------GIND 350 (471)
T ss_dssp CTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTTC-------CCCBC-----------TTSCBCCC---------EECT
T ss_pred ccCCHHHHHHHHHHHHhCcCCceEEEecceecCCCC-------CCCcc-----------CCCCcccc---------cccc
Confidence 3 568899999999999 9999999999998753 23320 00101111 1221
Q ss_pred CCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCeE--EEccCCcEEEEEEEcCCcEEEEEEECCCC
Q psy15051 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDYK--ISTPNNYVFILTRTEGSTSVYLIINLNSR 1032 (1065)
Q Consensus 955 ~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~~--~l~~~~~viaf~R~~~~~~vlVv~N~s~~ 1032 (1065)
..+|.. ++ ...+++++||+|++||+++ .|... ....+++++||.| ++.++||+|++ +
T Consensus 351 ~~~w~~---~~----------~~~~l~~~~~~Li~lR~~~----~g~~~~~~~~~~~~~~af~R---~~~~~vv~N~~-~ 409 (471)
T 1jae_A 351 DNTCSN---GY----------VCEHRWRQVYGMVGFRNAV----EGTQVENWWSNDDNQIAFSR---GSQGFVAFTNG-G 409 (471)
T ss_dssp TSCEET---TB----------CCGGGSHHHHHHHHHHHHT----TTCCEEEEEECSSSEEEEEE---TTTEEEEEESS-S
T ss_pred CCcccc---Cc----------ccchHHHHHHHHHHHHHhc----cCCceEEEEeCCCCEEEEec---CCCEEEEEeCC-C
Confidence 112210 00 1235889999999999998 46653 2334568999999 34689999999 8
Q ss_pred cEEEEcC
Q psy15051 1033 TETVDLS 1039 (1065)
Q Consensus 1033 ~~~v~l~ 1039 (1065)
+++++++
T Consensus 410 ~~~~~l~ 416 (471)
T 1jae_A 410 DLNQNLN 416 (471)
T ss_dssp CEEEEEE
T ss_pred cceeeee
Confidence 8887764
|
| >1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=387.22 Aligned_cols=270 Identities=19% Similarity=0.265 Sum_probs=190.1
Q ss_pred cceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeeccc
Q psy15051 31 TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHE 110 (1065)
Q Consensus 31 ~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~ 110 (1065)
+||||||||||++++++|.|||+||++|||||| +|||| ++|++ |++.++ .+|||
T Consensus 1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~LdyL~-~LGv~---------------~I~L~-Pi~~~~-~~~GY-------- 54 (441)
T 1lwj_A 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLK-ELGID---------------FVWLM-PVFSSI-SFHGY-------- 54 (441)
T ss_dssp CCEEEECHHHHCCSSSSSSCCHHHHHHTHHHHH-HTTCC---------------EEEEC-CCEECS-SSSCC--------
T ss_pred CeEEEEehHHhcCCCCCCccCHHHHHHhhHHHH-HcCCC---------------EEEeC-CCcCCC-CCCCC--------
Confidence 589999999999999999999999999999999 99999 55555 666665 57999
Q ss_pred ccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccc
Q psy15051 111 QISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLF 189 (1065)
Q Consensus 111 ~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f 189 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ .+|+||
T Consensus 55 ~~~dy-------~~idp~~Gt~~df~~lv~~aH~~Gi~Vi--------lD~-------V~NH~~----------~~~~~f 102 (441)
T 1lwj_A 55 DVVDF-------YSFKAEYGSEREFKEMIEAFHDSGIKVV--------LDL-------PIHHTG----------FLHTWF 102 (441)
T ss_dssp SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CTTBCC----------TTCHHH
T ss_pred Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------CCCccc----------CchHHH
Confidence 56665 667779999999999997 799999999 898 999976 678888
Q ss_pred cCCCc---ceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhh-ccccCC
Q psy15051 190 QGRPV---NLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQA-LQRVYP 265 (1065)
Q Consensus 190 ~~~~~---~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 265 (1065)
++... .+.+|+.++.-+ ..+- .+ + .|+. .+.|... .+++|
T Consensus 103 ~~~~~~~~~y~d~y~~~~~~---------~~~~-----------------~~-~--~~~~------~~~w~~~~~~~~y- 146 (441)
T 1lwj_A 103 QKALKGDPHYRDYYVWANKE---------TDLD-----------------ER-R--EWDG------EKIWHPLEDGRFY- 146 (441)
T ss_dssp HHHHTTCHHHHTTBCBCCTT---------SCTT-----------------CB-C--SSSC------CBCEEECTTSCEE-
T ss_pred HHHhccCCCCcceeeecCCC---------CCCc-----------------cc-c--cCCC------ccccccccCCceE-
Confidence 75311 122222111100 0000 00 0 0000 0011100 23344
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL 345 (1065)
Q Consensus 266 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (1065)
++.|. ..|||||++||+|| ++|++++
T Consensus 147 --------~~~f~-------------------~~~pdln~~np~V~---------------------------~~l~~~~ 172 (441)
T 1lwj_A 147 --------RGLFG-------------------PFSPDLNYDNPQVF---------------------------DEMKRLV 172 (441)
T ss_dssp --------ECTTC-------------------TTSCBBCSSSHHHH---------------------------HHHHHHH
T ss_pred --------EcccC-------------------CCCCccCCCCHHHH---------------------------HHHHHHH
Confidence 88888 79999999999997 8899999
Q ss_pred HHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCCCCC
Q psy15051 346 EFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADRQPS 425 (1065)
Q Consensus 346 ~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~ 425 (1065)
+||+++||||||+|+|++|++ +.++.+++++++|+.+.+. +|||..
T Consensus 173 ~~wl~~gvDGfR~D~~~~i~~------------------------------~~~~~~~~~~~~~~~~~~~----~igE~~ 218 (441)
T 1lwj_A 173 LHLLDMGVDGFRFDAAKHMRD------------------------------TIEQNVRFWKYFLSDLKGI----FLAEIW 218 (441)
T ss_dssp HHHHTTTCCEEEETTGGGSSS------------------------------SHHHHHHHHHHHTTTCCSE----EEECCC
T ss_pred HHHHhCCCCEEEEeChhhhcc------------------------------CCccHHHHHHHHHHHhHhh----EEEccC
Confidence 999999999999999999973 3477889999998866544 788875
Q ss_pred ccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------------HHHHHHhcCcCCcccchhhcc
Q psy15051 426 CADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------------VSHFIYCGIVDDTSALMVMNE 491 (1065)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------------~~~~Wq~~m~~~~~~~~~~~n 491 (1065)
.. .+.+. .| . ..++++|+|.+...+ .+..|+. ........+..|
T Consensus 219 ~~-~~~~~------~y---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~fl~n 276 (441)
T 1lwj_A 219 AE-ARMVD------EH---------G----RIFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVI--AKDYLPVNFTSN 276 (441)
T ss_dssp SC-HHHHH------HH---------H----HHHSEEECHHHHHHHHHHHHTTCSHHHHHHHHHHTS--SCSSEEEEESCC
T ss_pred CC-HHHHH------HH---------H----HhCCEeEehHHHHHHHHhhccCCHHHHHHHHHHHhc--cCCCceeeeccC
Confidence 42 22111 01 0 135688888876432 2233332 233445556799
Q ss_pred cCccccchhhhhh
Q psy15051 492 RRLSTIASRTMAA 504 (1065)
Q Consensus 492 hd~~r~~sr~~~~ 504 (1065)
||++|..++++.+
T Consensus 277 HD~~R~~~~~~~~ 289 (441)
T 1lwj_A 277 HDMSRLASFEGGF 289 (441)
T ss_dssp TTSCCGGGTTTCC
T ss_pred CCCCCcccccCCc
Confidence 9999999999764
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=371.29 Aligned_cols=320 Identities=15% Similarity=0.126 Sum_probs=219.4
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC----------CC
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG----------DI 627 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~----------~~ 627 (1065)
++.+|||++..+| + ||+++|+|||+||||+|||+||+++... +|
T Consensus 4 ~~~~~~q~f~~~~-----------~---------------~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~ 57 (422)
T 1ua7_A 4 KSGTILHAWNWSF-----------N---------------TLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYW 57 (422)
T ss_dssp TTSCEEECTTBCH-----------H---------------HHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGG
T ss_pred cCcEEEEEecCCH-----------H---------------HHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccc
Confidence 5779999999865 5 9999999999999999999999886422 58
Q ss_pred CCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCC
Q psy15051 628 GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNW 707 (1065)
Q Consensus 628 GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 707 (1065)
||+++||+.+||+|||++|||+||++|
T Consensus 58 gY~~~~y~~~~~~~G~~~d~~~lv~~~----------------------------------------------------- 84 (422)
T 1ua7_A 58 LYQPTSYQIGNRYLGTEQEFKEMCAAA----------------------------------------------------- 84 (422)
T ss_dssp GGCEEEEEEEETTTEEHHHHHHHHHHH-----------------------------------------------------
T ss_pred cccceeeeccCCCCCCHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999999999999
Q ss_pred ccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCC----CCCCc---cccCCC
Q psy15051 708 RAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTP----PNNWK---HINITS 780 (1065)
Q Consensus 708 ~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~----~~~W~---~ln~~n 780 (1065)
|++||+||+|+|+||++.+++||.....+ +.+||......... ... ...|. .||+.+
T Consensus 85 ------------h~~Gi~VilD~V~NH~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dln~~~ 148 (422)
T 1ua7_A 85 ------------EEYGIKVIVDAVINHTTFDYAAISNEVKS---IPNWTHGNTQIKNW-SDRWDVTQNSLLGLYDWNTQN 148 (422)
T ss_dssp ------------HTTTCEEEEEECCSBCCSCTTTSCHHHHT---STTCEEECCBCCCT-TCHHHHHHSBBTTBCEECTTS
T ss_pred ------------HHCCCEEEEEeccCcccCCccccCccccC---CcccccCCCCCCCc-CchhcccccccCCCCccccCC
Confidence 99999999999999999999998664432 56788642111000 000 00011 199999
Q ss_pred HHHHHHHHHHHHh----------------c------------------CCceEEEeecCCCChHHHhhhccCCCCccccc
Q psy15051 781 REVMRSQKDVVQS----------------F------------------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHL 826 (1065)
Q Consensus 781 ~~v~~~l~~~lk~----------------~------------------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~ 826 (1065)
|+|+++|.++++. + .++++++||.|.........|.+.. ...++
T Consensus 149 ~~v~~~l~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~f~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~--~~~~~ 226 (422)
T 1ua7_A 149 TQVQSYLKRFLERALNDGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEILQDSASRDAAYANYM--DVTAS 226 (422)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCTTSGGGCCSHHHHHTCSSCSEEEECCCCSTTCCHHHHHTTS--EEECH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEhhhhcCccchhhhHHHHHHHhhcCCCceEEEEeecCCCccHHHHhhcC--Ccchh
Confidence 9999999998332 1 2478999999987444344554422 22345
Q ss_pred cccHHHHHHhhcCC-ChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhh----hcCHHHHHHHHHHHHh-CCCeEEEE
Q psy15051 827 SVNYEIMNKFGATS-NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT----RYSPDLVDAMNMLTLL-LPGTAVTF 900 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s----~~~~~~~kla~~ll~t-lpGiP~Iy 900 (1065)
.|...+++.+.... ....+. .+.. .........|++|||+.|..+ .++..+.+++++++++ .||+|+||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~----~~~~-~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~~la~a~ll~~~~G~P~iy 301 (422)
T 1ua7_A 227 NYGHSIRSALKNRNLGVSNIS----HYAS-DVSADKLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFF 301 (422)
T ss_dssp HHHHHHHHHHHHTCCCHHHHS----SCSS-SSCGGGEEECSSCHHHHHSTTCSSTTCCHHHHHHHHHHHHTSSSSEEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHh----hccc-cCChhheeEEEecCCCCCCCccccccCCHHHHHHHHHHHHhCCCCeeEEe
Confidence 56666666664332 222221 1111 111112245999999998763 3456678888899998 69999999
Q ss_pred cccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcH
Q psy15051 901 AGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH 980 (1065)
Q Consensus 901 yGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l 980 (1065)
||+|+|+.+.. +|. +|..+.+. ..+
T Consensus 302 ~G~E~g~~~~~-------~p~----------------~~~~~~~~--------------------------------~~~ 326 (422)
T 1ua7_A 302 SRPEGGGNGVR-------FPG----------------KSQIGDRG--------------------------------SAL 326 (422)
T ss_dssp CCCTTCBTTBS-------CCS----------------SCBTBSCC--------------------------------CGG
T ss_pred cCcccCCCCCC-------CCc----------------cCcCCCCC--------------------------------Cch
Confidence 99999987631 221 11111111 112
Q ss_pred HHHHHHHHHHHHhcccccCCCeEEEcc---CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcC
Q psy15051 981 YSVYKDLTTLRATSGAVRMGDYKISTP---NNYVFILTRTEGSTSVYLIINLNSRTETVDLS 1039 (1065)
Q Consensus 981 ~~~~r~Li~LRk~~paL~~G~~~~l~~---~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~ 1039 (1065)
+. ++.|.+||+.+++|+ |+...+.. +++++||.|. +.++||+|++..+++++++
T Consensus 327 ~~-~~~l~~l~~~~~al~-g~~~~~~~~~~~~~v~af~R~---~~~lVv~N~~~~~~~~~~~ 383 (422)
T 1ua7_A 327 FE-DQAITAVNRFHNVMA-GQPEELSNPQGNNQIFMNQRG---SHGVVLANAGSSSVSINTA 383 (422)
T ss_dssp GG-CHHHHHHHHHHHHHT-TCCCCEECGGGCTTEEEEEET---TTEEEEEECSSSCEEEEEE
T ss_pred hh-CHHHHHHHHHHHhcC-CCceEEEeeCCCceEEEEEcC---CcEEEEEeCCCCCeEEEEe
Confidence 21 356666666666774 65544443 5689999994 3479999999988877765
|
| >3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=396.19 Aligned_cols=296 Identities=18% Similarity=0.226 Sum_probs=206.1
Q ss_pred Cchhhhccc--ceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc--cc
Q psy15051 23 NQKEWWKNT--VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA--VK 98 (1065)
Q Consensus 23 ~~~~w~~~~--viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~--~~ 98 (1065)
..+.||+++ |||||||++|. |||+||+++|+||+ +|||| ++|++ |++.++ ..
T Consensus 86 ~~~~W~~~~~~viY~~~~~~f~-------G~~~gl~~~LdyL~-~lGv~---------------~v~l~-P~~~~~~~~~ 141 (655)
T 3ucq_A 86 LRPDWLQRPEMVGYVAYTDRFA-------GTLKGVEERLDYLE-GLGVK---------------YLHLM-PLLRPREGEN 141 (655)
T ss_dssp HCTTGGGSTTCCEEEECHHHHH-------SSHHHHHTTHHHHH-HTTCC---------------EEEEC-CCEEECSSCC
T ss_pred cCCCcccCCceEEEEEehhhhC-------CCHHHHHHhhHHHH-HcCCC---------------EEEEC-CCcCCCCCCC
Confidence 457899998 99999999996 99999999999999 99999 55555 777665 35
Q ss_pred ccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcccccc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTD 177 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~ 177 (1065)
++||. |+||+ +|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 142 ~~GY~--~~dy~-------------~i~~~~Gt~~d~~~lv~~~h~~Gi~Vi--------~D~-------V~NH~s---- 187 (655)
T 3ucq_A 142 DGGYA--VQDYR-------------AVRPDLGTMDDLSALARALRGRGISLV--------LDL-------VLNHVA---- 187 (655)
T ss_dssp GGGTS--EEEEE-------------EECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE----
T ss_pred CCCcC--CcCcC-------------ccCccCCCHHHHHHHHHHHHHCCCEEE--------EEe-------eccccc----
Confidence 78983 55544 45558999999999997 799999999 887 999976
Q ss_pred CcccccCccccccCCCcc---eeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCc
Q psy15051 178 SKHQCQGQNFLFQGRPVN---LMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSS 254 (1065)
Q Consensus 178 ~~~~~~~~~~~f~~~~~~---~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1065)
.+|+||+..... +.+|+....-.-.|+......|-. .... .+ ..+-|.+
T Consensus 188 ------~~~~wf~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~p~~----------~~~~---~~-~~~~~~~-------- 239 (655)
T 3ucq_A 188 ------REHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEI----------FPDF---AP-GNFSWDE-------- 239 (655)
T ss_dssp ------TTSHHHHHHHTTCHHHHTTBCEESSSHHHHHHHTTCCCS----------CTTT---SC-SSEEEET--------
T ss_pred ------cchHHHHHhhcCCCCCcccEEEcCCCCCCccccccCccc----------cccC---CC-Ccccccc--------
Confidence 677888753221 222211100000000000000000 0000 00 0000111
Q ss_pred chhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhh
Q psy15051 255 NSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMF 334 (1065)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1065)
. + .....++++|.|. ..|||||+.||+|+
T Consensus 240 ----~----~-~~~~~~~~~~~f~-------------------~~qpDLn~~np~V~----------------------- 268 (655)
T 3ucq_A 240 ----E----I-GEGEGGWVWTTFN-------------------SYQWDLNWANPDVF----------------------- 268 (655)
T ss_dssp ----T----S-SSSSCEEEECSSS-------------------TTEEEBCTTSHHHH-----------------------
T ss_pred ----c----c-cccCCceEecccc-------------------CCCCccCCCCHHHH-----------------------
Confidence 1 0 0012344599999 79999999999997
Q ss_pred hHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh
Q psy15051 335 CYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK 414 (1065)
Q Consensus 335 ~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~ 414 (1065)
++|+++++||+++||||||+|||+||+|+.+ ..|.++|++|+++++||+++++
T Consensus 269 ----~~i~~~l~~w~~~GvDGfRlDa~~~l~k~~g-----------------------~~~~~~~~~~~~l~~~r~~~~~ 321 (655)
T 3ucq_A 269 ----LEFVDIILYLANRGVEVFRLDAIAFIWKRLG-----------------------TDCQNQPEVHHLTRALRAAARI 321 (655)
T ss_dssp ----HHHHHHHHHHHTTTCCEEEETTGGGSCCCTT-----------------------SCSSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHCCCCEEEEechhhccccCC-----------------------CccCCcHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999542 1288999999999999999988
Q ss_pred h-CCccCCCCCCccccceeeecccCccccCCCCcccccCC-CcccccccccchhhhHH----------HHHHHHhcCcCC
Q psy15051 415 F-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGN-QNRAESMEHRADLLHQV----------VSHFIYCGIVDD 482 (1065)
Q Consensus 415 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~e~~~~~~f~l~~~~----------~~~~Wq~~m~~~ 482 (1065)
. |+..++||.+....+...|+ |. |. .+.|++|+|+|.+...+ .+..|...++..
T Consensus 322 ~~p~~~~vgE~~~~~~~~~~y~-------~~-------~~~~~~~~~~~fdf~l~~~~~~a~~~~~~~~L~~~l~~~~~~ 387 (655)
T 3ucq_A 322 VAPAVAFKAEAIVAPADLIHYL-------GT-------RAHHGKVSDMAYHNSLMVQLWSSLASRNTRLFEEALRAFPPK 387 (655)
T ss_dssp HCTTCEEEECCCCCHHHHGGGT-------CC-------SSSSCCSCSEEECHHHHHHHHHHHHHCCCHHHHHHHHTCCCC
T ss_pred hCCCeEEEEecCCCHHHHHHHh-------CC-------CCccccccCeEECccchHHHHHHHhcCCHHHHHHHHHhCcCC
Confidence 6 99999999987766655444 22 11 12578999999998655 456777776532
Q ss_pred ---cccchhhcccCccc
Q psy15051 483 ---TSALMVMNERRLST 496 (1065)
Q Consensus 483 ---~~~~~~~~nhd~~r 496 (1065)
..+..+..|||.-.
T Consensus 388 ~~~~~~v~Fv~nHD~i~ 404 (655)
T 3ucq_A 388 PTSTTWGLYVRCHDDIG 404 (655)
T ss_dssp CTTCEEEECSCCSSCBC
T ss_pred CCCCeEEEEeeeCCCCC
Confidence 22334569999854
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=368.21 Aligned_cols=314 Identities=18% Similarity=0.183 Sum_probs=194.2
Q ss_pred cHHhh-hHHHHHcCcCEEEeCCCCcCCCCC---CCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccc
Q psy15051 598 GIIEK-IDYLKELGVETLWLTPFYSGPNGD---IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQ 673 (1065)
Q Consensus 598 Gl~~k-LdYLk~LGvnaI~L~PI~~~~~~~---~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~ 673 (1065)
||+++ |||||+||||+||||||++++++. |||++.|| +|||+|||++|||+||++|
T Consensus 15 gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y-~idp~~Gt~~dfk~Lv~~a------------------- 74 (448)
T 1g94_A 15 DVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRC------------------- 74 (448)
T ss_dssp HHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCccccccccc-ccCCCCCCHHHHHHHHHHH-------------------
Confidence 99998 599999999999999999997652 69999985 8999999999999999999
Q ss_pred cccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCch-------hhHhhh
Q psy15051 674 LYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD-------WFIKSA 746 (1065)
Q Consensus 674 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~-------wf~~~~ 746 (1065)
|++||+||+|+|+||++.+|+ |-..
T Consensus 75 ----------------------------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~-- 106 (448)
T 1g94_A 75 ----------------------------------------------SAAGVDIYVDTLINHMAAGSGTGTAGNSFGNK-- 106 (448)
T ss_dssp ----------------------------------------------HHTTCEEEEEEECSEECSSCEEBTTSCEEBTT--
T ss_pred ----------------------------------------------HHCCCEEEEEEeeccccCCCCCCCCCCCCccc--
Confidence 666666666666777766652 1000
Q ss_pred ccCCCCC-cceeecCCCCCCCCCCC-----CCC----ccccCCCHHHHHHHHHHHHh-----------------------
Q psy15051 747 QKIDPYT-NYYVWKDGLNGKPGTPP-----NNW----KHINITSREVMRSQKDVVQS----------------------- 793 (1065)
Q Consensus 747 ~~~~~~~-d~y~~~~~~dG~p~~~~-----~~W----~~ln~~n~~v~~~l~~~lk~----------------------- 793 (1065)
..+++. .+|.......|..-... ..| ..||+.||+||++|.++++.
T Consensus 107 -~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dln~~np~Vr~~i~~~~~~w~~~gvDGfR~D~~~~i~~~~~~ 185 (448)
T 1g94_A 107 -SFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQ 185 (448)
T ss_dssp -BCSSCCGGGBCCCCBCCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEEETGGGSCHHHHH
T ss_pred -cCCCCCHHHcCCCCCcCccccCCcccccceeeccCCCCcCCCCHHHHHHHHHHHHHHHhcCCCEEeecccccCCHHHHH
Confidence 000111 11110000000000000 011 11999999999999998332
Q ss_pred -----cCCceEEEeecCCCChH--HHhhhccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccc
Q psy15051 794 -----FPLILMIITEAYSPSLE--KVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMV 866 (1065)
Q Consensus 794 -----~~~~~~ligE~~~~~~~--~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~fl 866 (1065)
.+++++++||.|...++ ....|.+.+ ..+++.+...+...+.. .+...+....... ........++|+
T Consensus 186 ~~~~~~~~~~~~vgE~~~~~~~~~~~~~y~~~~--~~~~f~~~~~l~~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~f~ 260 (448)
T 1g94_A 186 SLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTG--LVTEFKYSTELGNTFRN-GSLAWLSNFGEGW--GFMPSSSAVVFV 260 (448)
T ss_dssp HHHHTSCSCCEEEECCCCSSCCSSCGGGGGGGS--EEECHHHHHHHHHHHHH-SCGGGGGGTTGGG--TCCCGGGEEECS
T ss_pred HHHHHhccCCeEEEEeecCCCCcccHHhhcCCC--ceeeccchhhHHHHhcC-CCHHHHHHhhhhc--CCCChhHceEEe
Confidence 33478999999986322 123444311 22333333344444432 2233333221111 112223445699
Q ss_pred cCCChhhH--h--hhc---CHHHHHHHHHHHHhCC-CeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCC
Q psy15051 867 GGHSITRI--A--TRY---SPDLVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGS 938 (1065)
Q Consensus 867 enHD~~Rl--~--s~~---~~~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~ 938 (1065)
+|||+.|+ . +.+ ..++.++|++++|++| |+|+||||+|+|+.+.. ++|. +
T Consensus 261 ~nHD~~r~~~~~g~~l~~~~~~~~~la~a~~l~~~~G~P~iy~G~E~G~~~~~------~~p~----------------~ 318 (448)
T 1g94_A 261 DNHDNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHGDTDA------GGPN----------------V 318 (448)
T ss_dssp CCTTGGGTSSCCTTSCCGGGTHHHHHHHHHHHHSCSSEEEEEECBCCTTCTTC------CCCS----------------S
T ss_pred cCCCCCCCCCCcccccccCCHHHHHHHHHHHHhCCCCeeEEEechhccccCCC------CCCc----------------c
Confidence 99999999 4 333 2357899999999999 99999999999998532 2332 2
Q ss_pred CCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC-CeEEEcc-CCcEEEEEE
Q psy15051 939 RVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG-DYKISTP-NNYVFILTR 1016 (1065)
Q Consensus 939 R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G-~~~~l~~-~~~viaf~R 1016 (1065)
|.+| |.+.. .+. ..| ...+++++||+|++||+++. .+ .+..... ++++++|.|
T Consensus 319 r~~~-~~~~~--~~~--~~w-----------------~~~~l~~~~~~Li~lR~~~~---g~~~~~~~~~~~~~~~af~R 373 (448)
T 1g94_A 319 PVHN-NGNLE--CFA--SNW-----------------KCEHRWSYIAGGVDFRNNTA---DNWAVTNWWDNTNNQISFGR 373 (448)
T ss_dssp CSEE-TTEEC--BSS--SSB-----------------CCGGGSHHHHHHHHHHHHST---TCCCCEEEEECSSSEEEEEC
T ss_pred cccc-ccCCc--ccC--CCc-----------------ccccHHHHHHHHHHHHHhcc---CCCceEEEEeCCCCEEEEEc
Confidence 3333 21100 000 012 01248899999999999982 22 2443333 468999999
Q ss_pred EcCCcEEEEEEECCCCcEE
Q psy15051 1017 TEGSTSVYLIINLNSRTET 1035 (1065)
Q Consensus 1017 ~~~~~~vlVv~N~s~~~~~ 1035 (1065)
.. +++|++|++.++++
T Consensus 374 ~~---~~~v~~N~~~~~~~ 389 (448)
T 1g94_A 374 GS---SGHMAINKEDSTLT 389 (448)
T ss_dssp GG---GEEEEEECSSSCBC
T ss_pred CC---cEEEEEECCCCCeE
Confidence 64 58889999987754
|
| >4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=391.46 Aligned_cols=282 Identities=16% Similarity=0.214 Sum_probs=193.2
Q ss_pred cCchhhhcccceEEEecccccCcCC---------------C--CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCccee
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNN---------------D--GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYI 84 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~---------------~--g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~ 84 (1065)
...|+||+++||||||||||+++++ + +.|||+||++|||||| +||||
T Consensus 217 ~~~p~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kLdyLk-~LGvt--------------- 280 (696)
T 4aee_A 217 VDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLE-DLGVE--------------- 280 (696)
T ss_dssp CSSCCTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTHHHHH-HHTCC---------------
T ss_pred CCCcchhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHhHHHH-HcCCC---------------
Confidence 3457999999999999999999873 2 5799999999999999 99999
Q ss_pred eecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccc
Q psy15051 85 SFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESL 163 (1065)
Q Consensus 85 ~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~ 163 (1065)
++|++ |++.++. +||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 281 ~IwL~-Pi~~s~~-~~GY--------d~~Dy-------~~idp~~Gt~~df~~Lv~~aH~~GikVi--------lD~--- 332 (696)
T 4aee_A 281 TIYLT-PIFSSTS-YHRY--------DTIDY-------KSIDKYLGTMEDFEKLVQVLHSRKIKIV--------LDI--- 332 (696)
T ss_dssp EEEEC-CCEEESS-SSCC--------SEEEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE---
T ss_pred EEEEC-CcccCCC-CCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------Eec---
Confidence 55666 7777664 5999 55555 566668999999999997 799999999 888
Q ss_pred cccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q psy15051 164 FSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY 243 (1065)
Q Consensus 164 ~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1065)
|+||++ .+|+||++...+- - ..++.++|
T Consensus 333 ----V~NHts----------~~~~~f~~~~~~~--------------~------------------------~s~y~dwy 360 (696)
T 4aee_A 333 ----TMHHTN----------PCNELFVKALREG--------------E------------------------NSPYWEMF 360 (696)
T ss_dssp ----CSSEEC----------TTSHHHHHHHHHC--------------T------------------------TSTTGGGB
T ss_pred ----cccccC----------ccCHHHHHHHhcC--------------C------------------------CCCCCCce
Confidence 999976 6778887631100 0 01122222
Q ss_pred -cccccc---------ccCCcchhh--hccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy15051 244 -WGDILE---------RTVSSNSLQ--ALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVL 311 (1065)
Q Consensus 244 -~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~ 311 (1065)
|.+... ...+++|.. ....++..+....+..+.|. ..|||||++||+||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~y~~~~~~-------------------~~~pdLN~~np~Vr 421 (696)
T 4aee_A 361 SFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNI-------------------WLMAKFNHDNPRTV 421 (696)
T ss_dssp CBCSCCCHHHHHHHHHHHSSSSCCGGGGGGSHHHHHSCCSBCBGGGC-------------------TTCEEBCTTCHHHH
T ss_pred EecCCCCcccccccccccCCCccccccccccccccCCCCceeeecCC-------------------CCchhhcCCCHHHH
Confidence 111000 000111110 00000000011223367777 79999999999997
Q ss_pred ccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCcc
Q psy15051 312 MVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYD 391 (1065)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~ 391 (1065)
++|+++++||+++||||||||||++|.
T Consensus 422 ---------------------------~~i~~~~~~Wl~~GvDGfRlDaa~~i~-------------------------- 448 (696)
T 4aee_A 422 ---------------------------DYFIDITKFWIDKGIDGFRIDVAMGIH-------------------------- 448 (696)
T ss_dssp ---------------------------HHHHHHHHHHHTTTCCEEEETTGGGSC--------------------------
T ss_pred ---------------------------HHHHHHHHHHHhCCCCEEEEechhhCC--------------------------
Confidence 889999999999999999999999872
Q ss_pred ccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH
Q psy15051 392 HIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV 470 (1065)
Q Consensus 392 h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~ 470 (1065)
+++++++|+.+.+. |+..++||. .+.. + ..+ .+++++|||.+...+
T Consensus 449 ----------~~f~~~~~~~v~~~~p~~~~igE~-----~~~~-------~--------l~~---~~~d~~~n~~~~~~~ 495 (696)
T 4aee_A 449 ----------YSWMKQYYEYIKNTYPDFLVLGEL-----AENP-------R--------IYM---DYFDSAMNYYLRKAI 495 (696)
T ss_dssp ----------HHHHHHHHHHHHHHCTTCEEEECC-----CSCG-------G--------GTT---TTCSEEBCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhhCCCcEEEecc-----cchh-------h--------hcC---CccceEECcHHHHHH
Confidence 48999999988765 899999998 1111 1 111 356788888764321
Q ss_pred ----------------HHHHHHhcCcCCccc--chhhcccCccccchhhhhh
Q psy15051 471 ----------------VSHFIYCGIVDDTSA--LMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 471 ----------------~~~~Wq~~m~~~~~~--~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..|+...+..... -.++.|||++|..+|++.+
T Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nfl~nHD~~R~~s~~~~~ 547 (696)
T 4aee_A 496 LELLIYKRIDLNEFISRINNVYAYIPHYKALSLYNMLGSHDVPRIKSMVQNN 547 (696)
T ss_dssp HHHHTSCCSCHHHHHHHHHHHHTTSCHHHHHHCEECSCCTTSCCHHHHHCCH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcchhhhhheeEecCCCCCCeehhhcCCc
Confidence 344555555432211 1246999999999999865
|
| >2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=373.73 Aligned_cols=213 Identities=20% Similarity=0.289 Sum_probs=154.5
Q ss_pred chhhhcccceEEEecccc-cCcCC----CC-----------------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCc
Q psy15051 24 QKEWWKNTVIYQILVPSF-KDSNN----DG-----------------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNT 81 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F-~d~~~----~g-----------------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~ 81 (1065)
.++||+++|||||||||| .+++. +| .|||+||++|||||| +||||
T Consensus 5 ~~~W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~-~LGv~------------ 71 (488)
T 2wc7_A 5 TPDWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQ-NLGIN------------ 71 (488)
T ss_dssp CCHHHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTHHHHH-HHTCC------------
T ss_pred CCCccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhhHHHH-HcCCC------------
Confidence 479999999999999999 55531 13 799999999999999 99999
Q ss_pred ceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccc
Q psy15051 82 IYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDI 160 (1065)
Q Consensus 82 ~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~ 160 (1065)
++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 72 ---~I~L~-Pi~~~~-~~~GY--------d~~dy-------~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~ 123 (488)
T 2wc7_A 72 ---AIYFT-PIFQSA-SNHRY--------HTHDY-------YQVDPMLGGNEAFKELLDAAHQRNIKVV--------LDG 123 (488)
T ss_dssp ---EEEES-CCEEEC-TTCTT--------SEEEE-------EEECGGGTHHHHHHHHHHHHHHTTCEEE--------EEE
T ss_pred ---EEEEC-CCCCCC-CCCCC--------CCcCc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe
Confidence 55555 777665 36898 44444 556668999999999997 799999999 887
Q ss_pred ccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy15051 161 ESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSS 240 (1065)
Q Consensus 161 ~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1065)
|+||++ .+|+||++...+-. ..++.
T Consensus 124 -------V~NH~s----------~~~~~f~~~~~~~~--------------------------------------~s~y~ 148 (488)
T 2wc7_A 124 -------VFNHSS----------RGFFFFHDVLENGP--------------------------------------HSPWV 148 (488)
T ss_dssp -------CCSBCC----------SSSHHHHHHHHHGG--------------------------------------GCTTG
T ss_pred -------CCCcCC----------CcCHHHHHHHhcCC--------------------------------------CCCCC
Confidence 888876 67788865311000 00111
Q ss_pred ccc-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q psy15051 241 EKY-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIA 319 (1065)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~ 319 (1065)
++| |.+ +....... .....++ .+.|. ..|||||++||+||
T Consensus 149 ~~y~~~~-~~~~~~~~--~~~~~~~---------~~~~~-------------------~~~pdln~~np~vr-------- 189 (488)
T 2wc7_A 149 NWFKIEG-WPLSPYNG--EFPANYV---------GWAGN-------------------RALPEFNHDNPEVR-------- 189 (488)
T ss_dssp GGBCBCS-SSCCSSCT--TSCCCBC---------BGGGC-------------------TTSBBBCTTSHHHH--------
T ss_pred CceeecC-CCCCCCCC--CCCCCcc---------ccCCC-------------------CCcCeeccCCHHHH--------
Confidence 222 111 00000000 0001111 34455 68999999999997
Q ss_pred CCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCch
Q psy15051 320 WNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQP 399 (1065)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~ 399 (1065)
++|+++++||+++||||||+|+++++.++
T Consensus 190 -------------------~~i~~~~~~Wl~~gvDGfR~D~~~~i~~~-------------------------------- 218 (488)
T 2wc7_A 190 -------------------EYIMEIAEYWLKFGIDGWRLDVPFEIKTP-------------------------------- 218 (488)
T ss_dssp -------------------HHHHHHHHHHHHHTCCEEEESSGGGCCCT--------------------------------
T ss_pred -------------------HHHHHHHHHHHHCCCCEEEEecccccChH--------------------------------
Confidence 88999999999999999999999988430
Q ss_pred hHHHHHHHHHHHHHhh-CCccCCCCCC
Q psy15051 400 ETYEMLYKWRTLVEKF-GNQSADRQPS 425 (1065)
Q Consensus 400 ~~~~~~~~~r~~~d~~-~~~~~~~~~~ 425 (1065)
++++++|+.+.+. |+..+|||..
T Consensus 219 ---~~~~~~~~~~~~~~p~~~~vgE~~ 242 (488)
T 2wc7_A 219 ---GFWQEFRDRTKAINPEAYIVGEVW 242 (488)
T ss_dssp ---THHHHHHHHHHHHCTTCEEEECCC
T ss_pred ---HHHHHHHHHHHhhCCCeEEEEEec
Confidence 4899999988775 8999999985
|
| >4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=379.50 Aligned_cols=113 Identities=23% Similarity=0.342 Sum_probs=94.2
Q ss_pred cCchhhhcccceEEEecccccCcCC-CCc---------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCc
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNN-DGI---------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCP 91 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~-~g~---------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p 91 (1065)
...|+||+++||||||||||+|+++ +|+ |||+||++|||||| +|||| ++|++ |
T Consensus 198 ~~~P~W~~~aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kLdYLk-~LGvt---------------~I~L~-P 260 (645)
T 4aef_A 198 IEFPTWVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLV-NLGIN---------------AIYLT-P 260 (645)
T ss_dssp CCCCGGGGGCCEEEECHHHHCCCSSCC---------CCCCHHHHHHTHHHHH-HHTCC---------------EEEEC-C
T ss_pred CCCChhHcCCEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhhHHHH-HcCCC---------------EEEEC-C
Confidence 3458999999999999999999987 454 99999999999999 99999 55555 7
Q ss_pred cccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCC
Q psy15051 92 ILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPS 170 (1065)
Q Consensus 92 ~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~n 170 (1065)
++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+|
T Consensus 261 if~s~-~~~GY--------d~~dy-------~~idp~~Gt~~df~~LV~~aH~~GI~VI--------lD~-------V~N 309 (645)
T 4aef_A 261 IFSSL-TYHGY--------DIVDY-------FHVARRLGGDRAFVDLLSELKRFDIKVI--------LDG-------VFH 309 (645)
T ss_dssp CEEES-STTCS--------SEEEE-------EEECGGGTCHHHHHHHHHHHHHTTCEEE--------EEE-------CCS
T ss_pred CCCCC-CCCCc--------CccCC-------CccCcccCCHHHHHHHHHHhhhcCCEEE--------EEe-------ccc
Confidence 77665 67999 55555 566668999999999997 799999999 888 999
Q ss_pred CccccccCcccccCccccccCC
Q psy15051 171 HSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 171 H~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
||+ .+|+||++.
T Consensus 310 Hts----------~~h~wf~~~ 321 (645)
T 4aef_A 310 HTS----------FFHPYFQDV 321 (645)
T ss_dssp BCC----------TTSHHHHHH
T ss_pred ccc----------cCCchhhhH
Confidence 976 788888764
|
| >3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=370.92 Aligned_cols=287 Identities=14% Similarity=0.141 Sum_probs=189.2
Q ss_pred hhhhcccceEEEecccccCcCCC-------------------CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceee
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNND-------------------GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYIS 85 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~-------------------g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~ 85 (1065)
..||+++|||||+||||++++++ ..|||+||++|||||| +||||+||
T Consensus 101 ~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~Ldyl~-~LGv~aI~------------- 166 (601)
T 3edf_A 101 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIA-GLGFTQLW------------- 166 (601)
T ss_dssp CCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHH-HTTCCEEE-------------
T ss_pred CCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHHHHHH-HcCCCEEE-------------
Confidence 57999999999999999988755 4699999999999999 99999444
Q ss_pred ecccCccccccc---cccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccc
Q psy15051 86 FWMNCPILTTAV---KTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIE 161 (1065)
Q Consensus 86 ~~~~~p~~~~~~---~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~ 161 (1065)
++ |++.+++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 167 --l~-Pi~~~~~~~~~~~GY--------~~~dy-------~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~- 219 (601)
T 3edf_A 167 --PT-PLVENDAAAYSYHGY--------AATDH-------YRIDPRYGSNEDFVRLSTEARKRGMGLI--------QDV- 219 (601)
T ss_dssp --ES-CCEECCCSSSGGGCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-
T ss_pred --EC-ccccCCCCCCCCCCc--------Ccccc-------ccccccCCCHHHHHHHHHHHHHcCCEEE--------EEE-
Confidence 44 5555543 45899 66666 677779999999999997 799999999 887
Q ss_pred cccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCc
Q psy15051 162 SLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSE 241 (1065)
Q Consensus 162 ~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1065)
|+||++ .+|+||++.+. .+|+.+.. .+. ...|. .....+++
T Consensus 220 ------V~NH~~----------~~~~~~~~~p~--~dw~~~~~-~~~------~~~~~------------~~~~~d~~-- 260 (601)
T 3edf_A 220 ------VLSHIG----------KHHWWMKDLPT--PDWINYGG-KFV------PTQHH------------RVAVQDPY-- 260 (601)
T ss_dssp ------CCSBCC----------TTSGGGGSCSS--TTSBGGGG-SCC------BCCCC------------GGGGGCTT--
T ss_pred ------CCcccC----------CcchhhhhCCc--cCceeeCC-CCC------CCccc------------cccccCCC--
Confidence 888865 66777775321 11111000 000 00000 00000000
Q ss_pred ccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 242 KYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
.........+ .+-|. ..|||||++||+|+
T Consensus 261 -------------~~~~~~~~~~---------~~wf~-------------------~~lpdLN~~np~V~---------- 289 (601)
T 3edf_A 261 -------------AAQADSENFT---------KGWFV-------------------EGMPDLNQTNPLVA---------- 289 (601)
T ss_dssp -------------CCHHHHHHHH---------HSBSS-------------------TTSCBBCTTSHHHH----------
T ss_pred -------------Cccccccccc---------ccccc-------------------ccccccccCCHHHH----------
Confidence 0000000111 22244 68999999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||+ ++||||||+|+++++.+
T Consensus 290 -----------------~~l~~~~~~Wi~~~GVDGfRlD~~~~~~~---------------------------------- 318 (601)
T 3edf_A 290 -----------------NYLIQNNIWWIEYAGLSGLRIDTYGYSDG---------------------------------- 318 (601)
T ss_dssp -----------------HHHHHHHHHHHHHHTCSEEEESSGGGSCH----------------------------------
T ss_pred -----------------HHHHHHHHHHHhhcCCCEEEeeccccCCH----------------------------------
Confidence 89999999999 68999999999998743
Q ss_pred HHHHHHHHHHHH-HhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--HHH--HH
Q psy15051 401 TYEMLYKWRTLV-EKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--VSH--FI 475 (1065)
Q Consensus 401 ~~~~~~~~r~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--~~~--~W 475 (1065)
+++++|++.+ +.+|+..++||........++++-...+ ... .-..+++++|+|++-..+ .+. .|
T Consensus 319 --~f~~~~~~~v~~~~p~~~~vgE~~~~~~~~~~~~~~~~~--------~~~-~~~~~l~~v~nf~~~~~l~~~~~~~~~ 387 (601)
T 3edf_A 319 --AFLTEYTRRLMAEYPRLNMVGQEWSTRVPVVARWQRGKA--------NFD-GYTSHLPSLMDFPLVDAMRNALSKTGE 387 (601)
T ss_dssp --HHHHHHHHHHHHHCTTCEEEECCCCSCHHHHHTTSTTCC--------CTT-CCCCCCCEEBCHHHHHHHHHHHHCTTS
T ss_pred --HHHHHHHHHHHHhCCCeEEEeeecCCchHHHhhhhcccc--------ccc-cccccCCeEEChHHHHHHHHHHhccch
Confidence 7899997655 4569999999998766665443311000 000 012457789999876543 111 12
Q ss_pred HhcC-------------cCCcccchhhcccCccccchhhhhh
Q psy15051 476 YCGI-------------VDDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 476 q~~m-------------~~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
...| ........+..|||++|..+|++.+
T Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~fl~NHD~~R~~s~~~~~ 429 (601)
T 3edf_A 388 ENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGED 429 (601)
T ss_dssp SSTTHHHHHHHGGGGGSSCGGGSEEESCCTTSCCHHHHTTTC
T ss_pred hhHHHHHHHHHhhhcccCCccceEEeeccCCCCCchhhcCCC
Confidence 2111 1122333556999999999998855
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=363.85 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=154.0
Q ss_pred hhhcccceEEEecccc-cCcCCC----C----------------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCccee
Q psy15051 26 EWWKNTVIYQILVPSF-KDSNND----G----------------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYI 84 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F-~d~~~~----g----------------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~ 84 (1065)
+||+++|||||+|||| +++++. | .|||+||++|||||| +||||
T Consensus 2 ~W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~-~LGv~--------------- 65 (475)
T 2z1k_A 2 AWYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLL-DLGVE--------------- 65 (475)
T ss_dssp CTTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHH-HHTCC---------------
T ss_pred CcccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHH-HcCCC---------------
Confidence 6999999999999999 666521 4 799999999999999 99999
Q ss_pred eecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccc
Q psy15051 85 SFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESL 163 (1065)
Q Consensus 85 ~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~ 163 (1065)
++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 66 ~I~l~-Pi~~~~-~~~gY--------~~~dy-------~~idp~~Gt~~df~~lv~~~h~~Gi~Vi--------lD~--- 117 (475)
T 2z1k_A 66 AIYLN-PVFAST-ANHRY--------HTVDY-------FQVDPILGGNEALRHLLEVAHAHGVRVI--------LDG--- 117 (475)
T ss_dssp EEEEC-CCEEES-STTCC--------SEEEE-------EEECGGGTCHHHHHHHHHHHHHTTCEEE--------EEE---
T ss_pred EEEEC-CCcCCC-CCCCc--------CCCCc-------CccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE---
Confidence 55555 666655 36898 44444 555668999999999997 799999999 887
Q ss_pred cccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q psy15051 164 FSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY 243 (1065)
Q Consensus 164 ~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1065)
|+||++ .+|+||++...+- . ..++.++|
T Consensus 118 ----V~NH~~----------~~~~~f~~~~~~g------~--------------------------------~s~y~~~y 145 (475)
T 2z1k_A 118 ----VFNHTG----------RGFFAFQHLMENG------E--------------------------------QSPYRDWY 145 (475)
T ss_dssp ----CCSBCC----------TTSHHHHHHHHHG------G--------------------------------GCTTGGGB
T ss_pred ----eccccc----------CCCHHHHHHHhcC------C--------------------------------CCCCccee
Confidence 888876 6677776521100 0 00111222
Q ss_pred -ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCC
Q psy15051 244 -WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNP 322 (1065)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~ 322 (1065)
|.+ +..... .....|+ .+.|. ..|||||++||+||
T Consensus 146 ~~~~-~~~~~~----~~~~~y~---------~~~~~-------------------~~~pdln~~np~v~----------- 181 (475)
T 2z1k_A 146 HVKG-FPLKAY----TAHPNYE---------AWWGN-------------------PELPKLKVETPAVR----------- 181 (475)
T ss_dssp CBCS-SSCCTT----SSSCSBC---------BGGGC-------------------TTSBBBCTTSHHHH-----------
T ss_pred ecCC-CCCcCC----CCCCCcc---------ccCCC-------------------CCcCccccCCHHHH-----------
Confidence 111 000000 0011222 55566 68999999999997
Q ss_pred CCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHH
Q psy15051 323 SCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETY 402 (1065)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 402 (1065)
++|+++++||+++||||||+|+++++.+ .
T Consensus 182 ----------------~~i~~~~~~w~~~gvDGfR~D~~~~~~~-----------------------------------~ 210 (475)
T 2z1k_A 182 ----------------EYLLAVAEHWIRFGVDGWRLDVPNEIPD-----------------------------------P 210 (475)
T ss_dssp ----------------HHHHHHHHHHHHHTCCEEEESSGGGCCC-----------------------------------H
T ss_pred ----------------HHHHHHHHHHHHCCCCEEeecccccCCH-----------------------------------H
Confidence 8899999999999999999999998843 1
Q ss_pred HHHHHHHHHHHhh-CCccCCCCCCc
Q psy15051 403 EMLYKWRTLVEKF-GNQSADRQPSC 426 (1065)
Q Consensus 403 ~~~~~~r~~~d~~-~~~~~~~~~~~ 426 (1065)
++++++|+.+.+. |+..+|||...
T Consensus 211 ~~~~~~~~~~~~~~p~~~~igE~~~ 235 (475)
T 2z1k_A 211 TFWREFRQRVKGANPEAYIVGEIWE 235 (475)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecC
Confidence 4999999988775 89999999853
|
| >1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=361.03 Aligned_cols=268 Identities=18% Similarity=0.258 Sum_probs=185.0
Q ss_pred CchhhhcccceEEEecccccCcCCC-------------------CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcce
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNND-------------------GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIY 83 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~-------------------g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~ 83 (1065)
..++||+++|||||+||||++++++ ..|||+||+++||||| +||||
T Consensus 127 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk-~LGvt-------------- 191 (588)
T 1j0h_A 127 EAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLV-DLGIT-------------- 191 (588)
T ss_dssp CCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHH-HHTCC--------------
T ss_pred CCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHHHHHH-HcCCC--------------
Confidence 3578999999999999999988632 2589999999999999 99999
Q ss_pred eeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccc
Q psy15051 84 ISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIES 162 (1065)
Q Consensus 84 ~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~ 162 (1065)
++|++ |++.++. +||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 192 -~I~L~-Pi~~~~~-~~GY--------d~~dy-------~~idp~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-- 243 (588)
T 1j0h_A 192 -GIYLT-PIFRSPS-NHKY--------DTADY-------FEVDPHFGDKETLKTLIDRCHEKGIRVM--------LDA-- 243 (588)
T ss_dssp -EEEEC-CCEECSS-SSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE--
T ss_pred -EEEEC-CcccCCC-CCCc--------Ccccc-------CccCccCCCHHHHHHHHHHHHHCCCEEE--------EEE--
Confidence 45555 6666553 6899 66666 667779999999999997 699999999 887
Q ss_pred ccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcc
Q psy15051 163 LFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEK 242 (1065)
Q Consensus 163 ~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1065)
|+||++ .+|+||++...+ |. ..++.++
T Consensus 244 -----V~NH~~----------~~~~~f~~~~~~------g~--------------------------------~s~y~dw 270 (588)
T 1j0h_A 244 -----VFNHCG----------YEFAPFQDVWKN------GE--------------------------------SSKYKDW 270 (588)
T ss_dssp -----CCSBCC----------TTCHHHHHHHHH------GG--------------------------------GCTTGGG
T ss_pred -----CcCcCc----------ccchhHHHHHhc------CC--------------------------------CCCcccc
Confidence 888865 566677542110 00 0112222
Q ss_pred c-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 243 Y-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
| |.+..... .+...|+ .+.|. ..|||||++||+||
T Consensus 271 y~~~~~~~~~------~~~~~y~---------~~~~~-------------------~~~pdLn~~np~Vr---------- 306 (588)
T 1j0h_A 271 FHIHEFPLQT------EPRPNYD---------TFAFV-------------------PQMPKLNTANPEVK---------- 306 (588)
T ss_dssp BCBSSSSCCC------SSSCSBC---------BSTTC-------------------TTSBBBCTTSHHHH----------
T ss_pred cccccCCCCC------CCCCCeE---------EecCC-------------------CCccccccCCHHHH----------
Confidence 2 11100000 0011222 44555 68999999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||+ +.||||||+|+++++-
T Consensus 307 -----------------~~l~~~~~~Wl~~~giDGfR~D~a~~~~----------------------------------- 334 (588)
T 1j0h_A 307 -----------------RYLLDVATYWIREFDIDGWRLDVANEID----------------------------------- 334 (588)
T ss_dssp -----------------HHHHHHHHHHHHHHCCCEEEETTGGGSC-----------------------------------
T ss_pred -----------------HHHHHHHHHHHHhcCCcEEEEeccccCC-----------------------------------
Confidence 88999999999 5799999999987651
Q ss_pred HHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH---------
Q psy15051 401 TYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------- 470 (1065)
Q Consensus 401 ~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------- 470 (1065)
++|++++|+.+.+. |+..+|||..-.... |..| .+++++|||.+....
T Consensus 335 -~~f~~~~~~~v~~~~p~~~~igE~~~~~~~------------------~~~g---~~~d~~~n~~~~~~~~~~~~~~~~ 392 (588)
T 1j0h_A 335 -HEFWREFRQEVKALKPDVYILGEIWHDAMP------------------WLRG---DQFDAVMNYPFTDGVLRFFAKEEI 392 (588)
T ss_dssp -HHHHHHHHHHHHHHCTTCEEEECCSSCCGG------------------GCSS---SSCSEEBCHHHHHHHHHHHTSCCS
T ss_pred -HHHHHHHHHHHHHhCCCeEEEEEecCchhh------------------hhcC---CCcCEEEChHHHHHHHHHHhcCCC
Confidence 48999999988765 899999997422111 1111 345677777654321
Q ss_pred -------HHHHHHhcCcCCc--ccchhhcccCccccchhhhhh
Q psy15051 471 -------VSHFIYCGIVDDT--SALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 471 -------~~~~Wq~~m~~~~--~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..++...+... ..-.+..|||++|..+|.+++
T Consensus 393 ~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~ 435 (588)
T 1j0h_A 393 SARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGD 435 (588)
T ss_dssp CHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhcccchhhhheeecCCCCCchhhhhcCCc
Confidence 2334444333211 112345899999999998765
|
| >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=365.78 Aligned_cols=299 Identities=15% Similarity=0.063 Sum_probs=184.6
Q ss_pred chhhhcccceEEEecccccCcCCC------------C---------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNND------------G---------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTI 82 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~------------g---------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~ 82 (1065)
.+.||+++||||||||||+|++++ + .|||+||++|||||| +||||+||++|..++...
T Consensus 2 ~~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kLdyLk-~LGv~aIwL~Pi~~~~~~ 80 (686)
T 1qho_A 2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLK-QLGVTTIWLSPVLDNLDT 80 (686)
T ss_dssp TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHH-HHTCCEEEECCCEEECSS
T ss_pred CcccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhhHHHH-hcCCCEEEECccccCCcc
Confidence 368999999999999999999874 3 399999999999999 999996666665553210
Q ss_pred eeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccc
Q psy15051 83 YISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIE 161 (1065)
Q Consensus 83 ~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~ 161 (1065)
|.-.....+||| ++.+| ++|||+|||++||++||+ ||++||||| +|+
T Consensus 81 --------~~~~g~~~~~GY--------d~~Dy-------~~idp~~Gt~~df~~Lv~~aH~~GikVi--------lD~- 128 (686)
T 1qho_A 81 --------LAGTDNTGYHGY--------WTRDF-------KQIEEHFGNWTTFDTLVNDAHQNGIKVI--------VDF- 128 (686)
T ss_dssp --------CSSTTCCCTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-
T ss_pred --------cccCCCCCcCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-
Confidence 110001356888 44444 555568999999999997 799999999 998
Q ss_pred cccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCC-CCCccCCCCCCCCCCCCCCCCCCCC
Q psy15051 162 SLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPH-LPHVCCPSGLPSTSRPDIEGEGPSS 240 (1065)
Q Consensus 162 ~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1065)
|+||++. .| ..++||+.....+.+ ..++..+.... ..||.
T Consensus 129 ------V~NHts~----~~---~~~~~~~~~g~~~~~------g~~~~~~~~~~~~~~f~-------------------- 169 (686)
T 1qho_A 129 ------VPNHSTP----FK---ANDSTFAEGGALYNN------GTYMGNYFDDATKGYFH-------------------- 169 (686)
T ss_dssp ------CTTEEEE----EB---TTBTTSTTTTCEEET------TEEEECSSSCTTTCCBC--------------------
T ss_pred ------ccccccc----cc---cccccccccCccccC------CcccccCCCCcccCeee--------------------
Confidence 9999871 11 122455433221110 00110000000 12221
Q ss_pred cccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccC
Q psy15051 241 EKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAW 320 (1065)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~ 320 (1065)
...+ .++|....+.+| .+.+.. + ..+|||||++||+||
T Consensus 170 ----~~~~----i~~w~~~~~~~y---------~~~~~~---------------~-~~~~pDLn~~np~Vr--------- 207 (686)
T 1qho_A 170 ----HNGD----ISNWDDRYEAQW---------KNFTDP---------------A-GFSLADLSQENGTIA--------- 207 (686)
T ss_dssp ----CSCB----CSCTTCHHHHHH---------SBCEET---------------T-TEEEEEBCTTSHHHH---------
T ss_pred ----cCCC----cCcCCCCcccce---------eecccC---------------C-cCCCCccccCCHHHH---------
Confidence 0000 011111112222 222110 0 025899999999997
Q ss_pred CCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 321 NPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||+++||||||||||+||.+
T Consensus 208 ------------------~~l~~~~~~Wl~~GVDGfRlDa~~~i~~---------------------------------- 235 (686)
T 1qho_A 208 ------------------QYLTDAAVQLVAHGADGLRIDAVKHFNS---------------------------------- 235 (686)
T ss_dssp ------------------HHHHHHHHHHHHTTCCEEEETTGGGSCH----------------------------------
T ss_pred ------------------HHHHHHHHHHHhcCCCEEEEeccccCCH----------------------------------
Confidence 8899999999999999999999999964
Q ss_pred HHHHHHHHHHHHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------
Q psy15051 401 TYEMLYKWRTLVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV---------- 470 (1065)
Q Consensus 401 ~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~---------- 470 (1065)
+++++||+.+.+.++..++||............ ....|. +. .+. ..|+|++...+
T Consensus 236 --~f~~~~~~~v~~~~~~~~vgE~~~~~~~~~~~~--~~~~~~--------~~--~~~-~~~df~~~~~~~~~~~~~~~~ 300 (686)
T 1qho_A 236 --GFSKSLADKLYQKKDIFLVGEWYGDDPGTANHL--EKVRYA--------NN--SGV-NVLDFDLNTVIRNVFGTFTQT 300 (686)
T ss_dssp --HHHHHHHHHHHHHCCCEEEECCCCCCTTSTTHH--HHHHHH--------HH--SSC-EEBCHHHHHHHHHHHTSCSSC
T ss_pred --HHHHHHHHHHHhcCCceEEeeeecCCCcccchh--hhhhhc--------cc--CCC-eeeccHHHHHHHHHHhcCCCC
Confidence 688899887777666889999754321100000 000000 00 011 22444433211
Q ss_pred ------HHHHHHhcCcCCcccchhhcccCccccchhhhhh
Q psy15051 471 ------VSHFIYCGIVDDTSALMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 471 ------~~~~Wq~~m~~~~~~~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..|+..+....+...+..|||++|..+ ++.+
T Consensus 301 ~~~l~~~l~~~~~~~~~~~~~~~fl~NHD~~R~~s-~~~~ 339 (686)
T 1qho_A 301 MYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLS-VNSN 339 (686)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCHHH-HCCC
T ss_pred HHHHHHHHHHHHHhccchhhceeeccCCCCccccc-cCCC
Confidence 45666666666666667779999999988 4443
|
| >1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=354.26 Aligned_cols=269 Identities=14% Similarity=0.240 Sum_probs=182.2
Q ss_pred CchhhhcccceEEEecccccCcCCC-------------------CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcce
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNND-------------------GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIY 83 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~-------------------g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~ 83 (1065)
+.++||+++|||||+||||++++.. ..|||+||+++||||| +||||
T Consensus 123 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk-~LGvt-------------- 187 (583)
T 1ea9_C 123 QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLS-KLGVN-------------- 187 (583)
T ss_dssp CCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHH-HHTCS--------------
T ss_pred CCCcccccceEEEEchHHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhhHHHH-HcCCC--------------
Confidence 4578999999999999999876621 1489999999999999 99999
Q ss_pred eeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccc
Q psy15051 84 ISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIES 162 (1065)
Q Consensus 84 ~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~ 162 (1065)
++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 188 -~I~L~-Pi~~~~-~~~GY--------d~~dy-------~~idp~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-- 239 (583)
T 1ea9_C 188 -AVYFT-PLFKAT-TNHKY--------DTEDY-------FQIDPQFGDKDTLKKLVDLCHERGIRVL--------LDA-- 239 (583)
T ss_dssp -EEEEC-CCSSCS-SSSTT--------SCSCT-------TCCCTTTCCHHHHHHHHHHHTTTTCEEE--------EEC--
T ss_pred -EEEEC-CCccCC-CCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE--
Confidence 44444 555554 36899 66666 677779999999999997 699999999 887
Q ss_pred ccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcc
Q psy15051 163 LFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEK 242 (1065)
Q Consensus 163 ~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1065)
|+||++ .+|.||++...+ . . ..++.++
T Consensus 240 -----V~NH~~----------~~~~~f~~~~~~---------------g--~---------------------~s~y~~~ 266 (583)
T 1ea9_C 240 -----VFNHSG----------RTFPPFVDVLKN---------------G--E---------------------KSKYKDW 266 (583)
T ss_dssp -----CCSBCC----------TTTHHHHHHHTT---------------T--T---------------------TCTTTTS
T ss_pred -----ccccCC----------CccHHHHHHHhc---------------C--C---------------------CCCccCc
Confidence 888865 566777552110 0 0 0122222
Q ss_pred c-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 243 Y-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
| |.+ +... .. .....++ .+.|. ..|||||++||+||
T Consensus 267 y~~~~-~~~~--~~--~~~~~y~---------~~~~~-------------------~~~pdln~~~p~Vr---------- 303 (583)
T 1ea9_C 267 FHIRS-LPLE--VV--DGIPTYD---------TFAFE-------------------PLMPKLNTEHPDVK---------- 303 (583)
T ss_dssp SCBCS-SSCC--CT--TSCCSBC---------BSSSC-------------------TTSBBCCTTSHHHH----------
T ss_pred eEecC-CCCC--CC--CCCCCce---------ecCCC-------------------CCcceeccCCHHHH----------
Confidence 2 111 0000 00 0001122 34444 68999999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||+ ++||||||+|+++++-
T Consensus 304 -----------------~~l~~~~~~W~~~~gvDGfR~D~~~~~~----------------------------------- 331 (583)
T 1ea9_C 304 -----------------EYLLKAAEYWIRETGIDGWRLDVANEVS----------------------------------- 331 (583)
T ss_dssp -----------------HHHHHHHHHHHHHHCCSEEEETTCTTSC-----------------------------------
T ss_pred -----------------HHHHHHHHHHHHhcCceEEEecccccCC-----------------------------------
Confidence 88999999999 7799999999987662
Q ss_pred HHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH---------
Q psy15051 401 TYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV--------- 470 (1065)
Q Consensus 401 ~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~--------- 470 (1065)
++|++++|+.+.+. |+..+|||...... .|.. +.+++++|||.+....
T Consensus 332 -~~f~~~~~~~v~~~~p~~~~igE~~~~~~------------------~~~~---~~~~d~~~n~~~~~~~~~~~~~~~~ 389 (583)
T 1ea9_C 332 -HQFWREFRRVVKQANPDAYILGEVWHESS------------------IWLE---GDQFDAVMNYPFTNAVLDFFIHQIA 389 (583)
T ss_dssp -HHHHHHHHHHHHHHCTTCEEEECCCSCCT------------------TTTT---TTSCSEEBCHHHHHHHHHHTTSCCS
T ss_pred -HHHHHHHHHHHHhhCCCeEEEEEEcCChH------------------HHhc---CCCcCEEECHHHHHHHHHHHcCCCC
Confidence 38999999988775 99999999742211 1111 1345677887654321
Q ss_pred -------HHHHHHhcCcCCc-cc-chhhcccCccccchhhhhh
Q psy15051 471 -------VSHFIYCGIVDDT-SA-LMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 471 -------~~~~Wq~~m~~~~-~~-~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..++...+... .. -.+..|||++|..+|.+++
T Consensus 390 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~ 432 (583)
T 1ea9_C 390 DAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGD 432 (583)
T ss_dssp CHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSC
T ss_pred CHHHHHHHHHHHHHHcchhhhhhheeecCCCCchhhhhhcCCc
Confidence 1222222222111 11 1245899999999998764
|
| >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=354.38 Aligned_cols=268 Identities=19% Similarity=0.292 Sum_probs=182.7
Q ss_pred CchhhhcccceEEEecccccCcCC-----------C---------CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcc
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNN-----------D---------GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTI 82 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~-----------~---------g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~ 82 (1065)
+.++||+++|||||+||||++++. . ..|||+||+++||||| +||||
T Consensus 123 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~LdyLk-~LGvt------------- 188 (585)
T 1wzl_A 123 TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE-ELGVT------------- 188 (585)
T ss_dssp CCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHH-HHTCC-------------
T ss_pred CCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHhHHHH-HcCCC-------------
Confidence 457899999999999999987661 1 2589999999999999 99999
Q ss_pred eeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccc
Q psy15051 83 YISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIE 161 (1065)
Q Consensus 83 ~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~ 161 (1065)
++|++ |++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 189 --~I~L~-Pi~~~~-~~~GY--------d~~dy-------~~id~~~Gt~~dfk~lv~~~H~~Gi~Vi--------lD~- 240 (585)
T 1wzl_A 189 --ALYFT-PIFASP-SHHKY--------DTADY-------LAIDPQFGDLPTFRRLVDEAHRRGIKII--------LDA- 240 (585)
T ss_dssp --EEEEC-CCEECS-SSSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHTTTCEEE--------EEE-
T ss_pred --EEEEC-CcccCC-CCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-
Confidence 45555 666655 36999 66666 677779999999999997 699999999 887
Q ss_pred cccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCc
Q psy15051 162 SLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSE 241 (1065)
Q Consensus 162 ~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1065)
|+||++ .+|+||++...+ +. ..++.+
T Consensus 241 ------V~NH~~----------~~~~~f~~~~~~------g~--------------------------------~s~y~~ 266 (585)
T 1wzl_A 241 ------VFNHAG----------DQFFAFRDVLQK------GE--------------------------------QSRYKD 266 (585)
T ss_dssp ------CCSBCC----------TTSHHHHHHHHH------GG--------------------------------GCTTGG
T ss_pred ------cCCcCC----------CccHHHHHHHhc------CC--------------------------------CCCccC
Confidence 888875 566777652110 00 011222
Q ss_pred cc-ccccccccCCcchhhhccccCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q psy15051 242 KY-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQ-YSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIA 319 (1065)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~ 319 (1065)
+| |.+ .... . .+...|+ .+. |. ..|||||++||+||
T Consensus 267 ~y~~~~-~~~~--~---~~~~~y~---------~~~~~~-------------------~~~pdln~~~~~vr-------- 304 (585)
T 1wzl_A 267 WFFIED-FPVS--K---TSRTNYE---------TFAVQV-------------------PAMPKLRTENPEVK-------- 304 (585)
T ss_dssp GBCBSS-SSCC--C---SSCCSBC---------BSSSSC-------------------TTCBBBCTTSHHHH--------
T ss_pred ceEecC-CCCC--C---CCCCCee---------EcccCC-------------------CCCCeeCcCCHHHH--------
Confidence 22 111 0000 0 0001111 222 44 68999999999997
Q ss_pred CCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCch
Q psy15051 320 WNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQP 399 (1065)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~ 399 (1065)
++|+++++||+++||||||+|+++++.
T Consensus 305 -------------------~~l~~~~~~Wl~~gvDGfR~D~a~~~~---------------------------------- 331 (585)
T 1wzl_A 305 -------------------EYLFDVARFWMEQGIDGWRLDVANEVD---------------------------------- 331 (585)
T ss_dssp -------------------HHHHHHHHHHHHTTCCEEEETTGGGSC----------------------------------
T ss_pred -------------------HHHHHHHHHHHhCCCeEEEEeccccCC----------------------------------
Confidence 889999999999999999999987762
Q ss_pred hHHHHHHHHHHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------
Q psy15051 400 ETYEMLYKWRTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV-------- 470 (1065)
Q Consensus 400 ~~~~~~~~~r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~-------- 470 (1065)
+++++++|+.+.+. |+..+|||....... |..| .+++++|||.+....
T Consensus 332 --~~f~~~~~~~v~~~~p~~~~igE~~~~~~~------------------~~~~---~~~d~~~n~~~~~~~~~~~~~~~ 388 (585)
T 1wzl_A 332 --HAFWREFRRLVKSLNPDALIVGEIWHDASG------------------WLMG---DQFDSVMNYLFRESVIRFFATGE 388 (585)
T ss_dssp --HHHHHHHHHHHHHHCTTCEEEECCSSCCGG------------------GCSS---SSCSEEBCHHHHHHHHHHHTSCC
T ss_pred --HHHHHHHHHHHHHHCCCEEEEEEecCchHH------------------HhcC---CCcCEEECHHHHHHHHHHhcCCC
Confidence 38999999988775 999999997532211 1111 235677777654321
Q ss_pred --------HHHHHHhcCcCCc-cc-chhhcccCccccchhhhhh
Q psy15051 471 --------VSHFIYCGIVDDT-SA-LMVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 471 --------~~~~Wq~~m~~~~-~~-~~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..++...+... .. -.+..|||++|..+|.+++
T Consensus 389 ~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~nHD~~r~~~~~~~~ 432 (585)
T 1wzl_A 389 IHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGN 432 (585)
T ss_dssp SCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHhcchhhhccceEecCCCCchhhHHhcCCc
Confidence 1223322222111 11 1245999999999998764
|
| >2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=342.00 Aligned_cols=221 Identities=20% Similarity=0.341 Sum_probs=163.7
Q ss_pred CchhhhcccceEEEe-cccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccC
Q psy15051 23 NQKEWWKNTVIYQIL-VPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWS 101 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~-~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~g 101 (1065)
+.++||+++|||||| ||||+ ++|+|||+||++|||||| +|||| ++|++ |++.+++. |
T Consensus 8 ~~~~ww~~~viYqi~~~~sf~---gdg~Gdl~gi~~~Ldyl~-~LGv~---------------~i~l~-Pi~~~~~~--~ 65 (424)
T 2dh2_A 8 PAQKWWHTGALYRIGDLQAFQ---GHGAGNLAGLKGRLDYLS-SLKVK---------------GLVLG-PIHKNQKD--D 65 (424)
T ss_dssp CCCCGGGSSCEEEECCHHHHH---CTTCCSHHHHHTTHHHHH-HTTCS---------------EEEEC-CCEEECTT--C
T ss_pred CcccccccCeEEEEcCccccC---CCCCCCHHHHHHHHHHHH-HcCCC---------------EEEEC-CCCCCCCC--C
Confidence 446899999999998 99997 678999999999999999 99999 55666 77777643 4
Q ss_pred ccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcc
Q psy15051 102 RRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKH 180 (1065)
Q Consensus 102 y~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~ 180 (1065)
| ++.+| ++|||+|||++||++||+ ||++||+||
T Consensus 66 y--------~~~dy-------~~idp~~Gt~~d~~~lv~~ah~~Gi~vi------------------------------- 99 (424)
T 2dh2_A 66 V--------AQTDL-------LQIDPNFGSKEDFDSLLQSAKKKSIRVI------------------------------- 99 (424)
T ss_dssp S--------TTEEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE-------------------------------
T ss_pred C--------Ccccc-------cccCccCCCHHHHHHHHHHHHHCCCEEE-------------------------------
Confidence 5 44444 556668999999999997 799999999
Q ss_pred cccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhc
Q psy15051 181 QCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQAL 260 (1065)
Q Consensus 181 ~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1065)
+|+|+||++ .|+||
T Consensus 100 ------------------------lD~V~NH~s-~~~wF----------------------------------------- 113 (424)
T 2dh2_A 100 ------------------------LDLTPNYRG-ENSWF----------------------------------------- 113 (424)
T ss_dssp ------------------------EECCTTTTS-SSTTC-----------------------------------------
T ss_pred ------------------------EEECCCcCC-Ccccc-----------------------------------------
Confidence 455666666 56777
Q ss_pred cccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHH
Q psy15051 261 QRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITL 340 (1065)
Q Consensus 261 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1065)
..| +|+|| ++
T Consensus 114 -------------------------------------~~q------~~~Vr---------------------------~~ 123 (424)
T 2dh2_A 114 -------------------------------------STQ------VDTVA---------------------------TK 123 (424)
T ss_dssp -------------------------------------SSC------HHHHH---------------------------HH
T ss_pred -------------------------------------ccc------CHHHH---------------------------HH
Confidence 011 25786 78
Q ss_pred HHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCcc
Q psy15051 341 LLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQS 419 (1065)
Q Consensus 341 ~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~ 419 (1065)
|+++++||+++||||||+|+|+++. .+++++++||++++++ |+..
T Consensus 124 ~~~~~~~Wl~~gvDGfRlD~v~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 169 (424)
T 2dh2_A 124 VKDALEFWLQAGVDGFQVRDIENLK----------------------------------DASSFLAEWQNITKGFSEDRL 169 (424)
T ss_dssp HHHHHHHHHHHTCCEEEECCGGGST----------------------------------THHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHcCCCEEEEeccccCC----------------------------------ccHHHHHHHHHHHHHhCCCcE
Confidence 9999999999999999999998762 2358999999999988 5544
Q ss_pred -CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhh--------HH-HHHHHHhcCcCCcccchhh
Q psy15051 420 -ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLH--------QV-VSHFIYCGIVDDTSALMVM 489 (1065)
Q Consensus 420 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~--------~~-~~~~Wq~~m~~~~~~~~~~ 489 (1065)
+++|.......... +++ ..++++|+|+++. +. .+..|+..+. .++.++++
T Consensus 170 ~i~~e~~~~~~~~~~-------~~~------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 229 (424)
T 2dh2_A 170 LIAGTNSSDLQQILS-------LLE------------SNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNATG-NRWCSWSL 229 (424)
T ss_dssp EEEECSCCCHHHHHH-------HTT------------TCTTCEEECSTTTTCSSCHHHHHHHHHHHHHHHT-TCCCEECS
T ss_pred EEEEEecCCHHHHHH-------Hhc------------cccccccchhhhcCCCCCHHHHHHHHHHHHHhhc-cCceeeee
Confidence 44554332222222 111 1134677776652 11 6789998874 45666655
Q ss_pred cccCccccchhhhhh
Q psy15051 490 NERRLSTIASRTMAA 504 (1065)
Q Consensus 490 ~nhd~~r~~sr~~~~ 504 (1065)
|++|.++|++++
T Consensus 230 ---d~~r~~s~~~~~ 241 (424)
T 2dh2_A 230 ---SQARLLTSFLPA 241 (424)
T ss_dssp ---CSSCCGGGTSCH
T ss_pred ---cCcchhhhcCCH
Confidence 789999999864
|
| >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=350.48 Aligned_cols=223 Identities=17% Similarity=0.251 Sum_probs=159.9
Q ss_pred chhhhcccceEEEecccccCcCCC-------------------------------Cc-----ccccchhhhhhhhHhh-h
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNND-------------------------------GI-----GDLRGKNVRKRYLELT-L 66 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~-------------------------------g~-----Gdl~gi~~kL~yl~~~-L 66 (1065)
.++||+++|||||+|+||++++++ ++ |||+||++|||||| + |
T Consensus 126 ~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~f~gG~~~gi~~~LdyLk-~~L 204 (637)
T 1ji1_A 126 TPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIK-KTL 204 (637)
T ss_dssp CCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHH-TTT
T ss_pred CCchhhCCcEEEEecccccCCCCcccccccccccccccccccccccCcccccccCCcccccCcCHHHHHHhHHHHH-hcc
Confidence 478999999999999999987653 33 99999999999999 9 9
Q ss_pred CCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCC
Q psy15051 67 GLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDS 145 (1065)
Q Consensus 67 Gv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~g 145 (1065)
||| ++|++ |++.++. +||| ++.+| ++|||+|||++||++||+ ||++|
T Consensus 205 Gvt---------------~I~L~-Pi~~~~~-~~GY--------d~~dy-------~~id~~~Gt~~dfk~LV~~~H~~G 252 (637)
T 1ji1_A 205 GAN---------------ILYLN-PIFKAPT-NHKY--------DTQDY-------MAVDPAFGDNSTLQTLINDIHSTA 252 (637)
T ss_dssp CCC---------------EEEES-CCEECSS-SSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHCSS
T ss_pred CCC---------------EEEEC-CCccCCC-CCCc--------Cccch-------hhhccccCCHHHHHHHHHHHHhCC
Confidence 999 55555 6666654 7999 66666 677779999999999997 69999
Q ss_pred --C--EEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccC
Q psy15051 146 --L--HLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCC 221 (1065)
Q Consensus 146 --i--~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~ 221 (1065)
| +|| +|+ |+||++ .+|+||+....
T Consensus 253 ~~I~~~VI--------lD~-------V~NH~~----------~~~~~f~~~~~--------------------------- 280 (637)
T 1ji1_A 253 NGPKGYLI--------LDG-------VFNHTG----------DSHPWFDKYNN--------------------------- 280 (637)
T ss_dssp SSSCCEEE--------EEE-------CCSBCC----------TTSTTTCTTCC---------------------------
T ss_pred CCccceEE--------EEE-------CcccCC----------CCcHHHhhhhc---------------------------
Confidence 9 999 676 666654 33445543211
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy15051 222 PSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQ 300 (1065)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q 300 (1065)
+. ..-....-+.|+.++| |.+.. ..| ..+. ....|
T Consensus 281 ---f~-~~g~y~~~~~py~~~y~~~~~~-------------~~~----------~~~~-----------------g~~~~ 316 (637)
T 1ji1_A 281 ---FS-SQGAYESQSSPWYNYYTFYTWP-------------DSY----------ASFL-----------------GFNSL 316 (637)
T ss_dssp ---SS-SCCTTTCTTCTTGGGBCEEETT-------------TEE----------CEET-----------------TEEEE
T ss_pred ---cC-ccccccCCCCccccccccCCCC-------------CCc----------cccc-----------------CCCCc
Confidence 00 0000001123444455 32210 000 1110 01368
Q ss_pred CCCCCCCC--cccccccccccCCCCCccccccchhhhHHHHHH----HHHHHHHHH--cCCCeeeecCccccccCCCCCC
Q psy15051 301 PHCAVPNP--KVLMVPNADIAWNPSCQTTVVDCQMFCYEITLL----LCILEFWLK--RGVDGFGMDSVLKLYEHESFAN 372 (1065)
Q Consensus 301 ~dln~~np--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~Wl~--~GvDGfRlDav~~l~~~~~~~d 372 (1065)
||||++|| +|| ++| +++++||++ .||||||+|+|++|+++..
T Consensus 317 pdln~~~p~~~Vr---------------------------~~i~~~~~~~~~~Wl~~~~gvDGfR~Da~~~l~~~~~--- 366 (637)
T 1ji1_A 317 PKLNYGNSGSAVR---------------------------GVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGN--- 366 (637)
T ss_dssp EBBBCCSTTCHHH---------------------------HHHTTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTTC---
T ss_pred ccccccCChHHHH---------------------------HHHHhhhHHHHHHHHhCcCCCCEEEEEchhhhhccCc---
Confidence 99999999 997 789 999999998 4999999999999987420
Q ss_pred CCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCcc
Q psy15051 373 EPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSCA 427 (1065)
Q Consensus 373 ~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~~ 427 (1065)
....++.++|+++||+.+.+. |+..+|||....
T Consensus 367 ----------------------~~~~~~~~~fl~~~~~~v~~~~p~~~ligE~~~~ 400 (637)
T 1ji1_A 367 ----------------------NGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGN 400 (637)
T ss_dssp ----------------------CCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSC
T ss_pred ----------------------cccccchHHHHHHHHHHHHhhCCCeEEEEEecCC
Confidence 013468899999999988765 899999998643
|
| >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=339.79 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=86.7
Q ss_pred chhhhcccceEEEecccccCcCCCCc------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGI------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCP 91 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p 91 (1065)
.+.||+++||||||||||+++++++. |||+||+++|+||| +||||+||++|..++...
T Consensus 2 ~~~~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~-~LGv~~I~l~Pi~~~~~~--------- 71 (484)
T 2aaa_A 2 SAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIE-GMGFTAIWISPITEQLPQ--------- 71 (484)
T ss_dssp CHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHH-TTTCCEEEECCCEEECCC---------
T ss_pred ChhhhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHHHHHHH-hcCCCEEEeCccccCccc---------
Confidence 35789999999999999999998876 99999999999999 999995555554442210
Q ss_pred cccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCC
Q psy15051 92 ILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPS 170 (1065)
Q Consensus 92 ~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~n 170 (1065)
.-.....+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+|
T Consensus 72 ~~~~~~~~~GY--------~~~dy-------~~id~~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-------V~N 121 (484)
T 2aaa_A 72 DTADGEAYHGY--------WQQKI-------YDVNSNFGTADNLKSLSDALHARGMYLM--------VDV-------VPD 121 (484)
T ss_dssp CBTTBCSTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHTTTCEEE--------EEE-------CCS
T ss_pred ccccCCCCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcC
Confidence 00001246888 44444 555568999999999997 799999999 998 999
Q ss_pred Ccc
Q psy15051 171 HSM 173 (1065)
Q Consensus 171 H~~ 173 (1065)
|++
T Consensus 122 H~~ 124 (484)
T 2aaa_A 122 HMG 124 (484)
T ss_dssp BCC
T ss_pred CcC
Confidence 986
|
| >2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=340.35 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=86.6
Q ss_pred chhhhcccceEEEecccccCcCCCCc------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGI------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCP 91 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p 91 (1065)
.+.||++++|||||||||+++++++. |||+||+++|+||| +||||+||++|..++...
T Consensus 2 ~~~~w~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~-~lGvt~I~l~Pi~~~~~~--------- 71 (478)
T 2guy_A 2 TPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQ-GMGFTAIWITPVTAQLPQ--------- 71 (478)
T ss_dssp CHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHH-TTTCCEEEECCCEEECCC---------
T ss_pred CchhhccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHH-hcCCCEEEeCCcccCCcc---------
Confidence 35789999999999999999988876 99999999999999 999996666555542210
Q ss_pred cccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCC
Q psy15051 92 ILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPS 170 (1065)
Q Consensus 92 ~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~n 170 (1065)
.-.....+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+|
T Consensus 72 ~~~~~~~~~GY--------~~~d~-------~~idp~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-------V~N 121 (478)
T 2guy_A 72 TTAYGDAYHGY--------WQQDI-------YSLNENYGTADDLKALSSALHERGMYLM--------VDV-------VAN 121 (478)
T ss_dssp CBTTBCCTTSC--------SEEEE-------EEECTTSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCS
T ss_pred ccCCCCCCCCC--------Ccccc-------cccCccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------Ccc
Confidence 00001246888 44444 555568999999999997 799999999 998 999
Q ss_pred Ccc
Q psy15051 171 HSM 173 (1065)
Q Consensus 171 H~~ 173 (1065)
|++
T Consensus 122 H~~ 124 (478)
T 2guy_A 122 HMG 124 (478)
T ss_dssp BCC
T ss_pred cCC
Confidence 986
|
| >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=353.83 Aligned_cols=283 Identities=13% Similarity=0.107 Sum_probs=177.7
Q ss_pred hcccceEEEecccccCcCCC---------Cc---------ccccchhhhhh--hhHhhhCCCCcCCCCCCCCCcceeeec
Q psy15051 28 WKNTVIYQILVPSFKDSNND---------GI---------GDLRGKNVRKR--YLELTLGLDPCGSSMNTDSNTIYISFW 87 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~---------g~---------Gdl~gi~~kL~--yl~~~LGv~~~~~~p~~~~~~~~~~~~ 87 (1065)
|+++||||||||||+|++++ +. |||+||++||| ||| +||||+||++|.+++...
T Consensus 9 ~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kLd~~yLk-~LGv~aIwL~Pi~~~~~~----- 82 (680)
T 1cyg_A 9 FTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLT-DMGVTAIWISQPVENVFS----- 82 (680)
T ss_dssp CTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTT-TTTCCEEEECCCEEECCC-----
T ss_pred CccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhcCHHHHH-hCCCCEEEeCccccCccc-----
Confidence 69999999999999999874 33 99999999999 999 999997776666553210
Q ss_pred ccCcc--ccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccccc
Q psy15051 88 MNCPI--LTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLF 164 (1065)
Q Consensus 88 ~~~p~--~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~ 164 (1065)
|. ......+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 83 ---~~~~~~g~~~~~GY--------~~~Dy-------~~idp~~Gt~~df~~Lv~~aH~~GIkVi--------lD~---- 132 (680)
T 1cyg_A 83 ---VMNDASGSASYHGY--------WARDF-------KKPNPFFGTLSDFQRLVDAAHAKGIKVI--------IDF---- 132 (680)
T ss_dssp ---CCSSSSCCCSTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE----
T ss_pred ---cccccCCCCCCCCc--------Cchhc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe----
Confidence 10 0001256888 44444 555558999999999997 799999999 998
Q ss_pred ccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccc
Q psy15051 165 STKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYW 244 (1065)
Q Consensus 165 ~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1065)
|+||++.. + ..++||+.....+.+ ..++.........||.
T Consensus 133 ---V~NHts~~----~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~f~------------------------ 172 (680)
T 1cyg_A 133 ---APNHTSPA----S---ETNPSYMENGRLYDN------GTLLGGYTNDANMYFH------------------------ 172 (680)
T ss_dssp ---CTTEEEEC----C---SSCTTSTTTTCEEET------TEEEECSTTCTTCCBC------------------------
T ss_pred ---CCCCCCcc----c---ccCcchhhcCccccC------cccccccCCCchhcee------------------------
Confidence 99998711 1 122455432211110 0111000011112221
Q ss_pred cccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Q psy15051 245 GDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSC 324 (1065)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~ 324 (1065)
...+ ++|....+.+| .+ +. +|||||++||+||
T Consensus 173 ~~~~-----~~~~~~~~~~y---------~~-~~--------------------~~pDLn~~np~Vr------------- 204 (680)
T 1cyg_A 173 HNGG-----TTFSSLEDGIY---------RN-LF--------------------DLADLNHQNPVID------------- 204 (680)
T ss_dssp CSCB-----CCCSSHHHHHS---------SB-ST--------------------TEEEBCTTSHHHH-------------
T ss_pred cCCC-----CCcCCCccccc---------cC-cC--------------------CCCccccCCHHHH-------------
Confidence 0000 11111112223 22 22 5899999999997
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHH
Q psy15051 325 QTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEM 404 (1065)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 404 (1065)
++|+++++||+++||||||||||+||.+ ++
T Consensus 205 --------------~~i~~~~~~Wl~~GVDGfRlDa~~~i~~------------------------------------~f 234 (680)
T 1cyg_A 205 --------------RYLKDAVKMWIDMGIDGIRMDAVKHMPF------------------------------------GW 234 (680)
T ss_dssp --------------HHHHHHHHHHHTTTCCEEEESCGGGSCS------------------------------------HH
T ss_pred --------------HHHHHHHHHHHhCCCCEEEEeccccCCH------------------------------------HH
Confidence 8899999999999999999999999954 67
Q ss_pred HHHHHHHHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH--------------
Q psy15051 405 LYKWRTLVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV-------------- 470 (1065)
Q Consensus 405 ~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~-------------- 470 (1065)
+++|++.+.+.+...++||......+... .+..|. +. .. ...|+|++-..+
T Consensus 235 ~~~~~~~v~~~~~~~~vgE~~~~~~~~~~----~~~~~~--------~~--~~-~~~~df~~~~~~~~~~~~~~~~~~~l 299 (680)
T 1cyg_A 235 QKSLMDEIDNYRPVFTFGEWFLSENEVDA----NNHYFA--------NE--SG-MSLLDFRFGQKLRQVLRNNSDNWYGF 299 (680)
T ss_dssp HHHHHHHHHHHCCCEEEECCCCCTTCCCH----HHHHHH--------HH--SS-CEEBCHHHHHHHHHHHTTCSCCHHHH
T ss_pred HHHHHHHHhhcCCcEEEccCCCCCcccch----hhhhhh--------cc--CC-CceECchHHHHHHHHHhcCCCCHHHH
Confidence 88888877766558889997543221100 000000 00 00 122444432211
Q ss_pred --HHHHHHhcCcCCcccchhhcccCccccch
Q psy15051 471 --VSHFIYCGIVDDTSALMVMNERRLSTIAS 499 (1065)
Q Consensus 471 --~~~~Wq~~m~~~~~~~~~~~nhd~~r~~s 499 (1065)
.+..|+...........++.|||++|..+
T Consensus 300 ~~~l~~~~~~~~~~~~~~~fl~NHD~~R~~s 330 (680)
T 1cyg_A 300 NQMIQDTASAYDEVLDQVTFIDNHDMDRFMI 330 (680)
T ss_dssp HHHHHHHHHHCTTGGGCEECSCCTTSCCSCC
T ss_pred HHHHHHHHhhccchhhceEEecCCCcchhcc
Confidence 34556555555556666779999999988
|
| >3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=351.54 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=180.4
Q ss_pred hhhcccceEEEecccccCcCCC---------Cc---------ccccchhhhhh--hhHhhhCCCCcCCCCCCCCCcceee
Q psy15051 26 EWWKNTVIYQILVPSFKDSNND---------GI---------GDLRGKNVRKR--YLELTLGLDPCGSSMNTDSNTIYIS 85 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~---------g~---------Gdl~gi~~kL~--yl~~~LGv~~~~~~p~~~~~~~~~~ 85 (1065)
..|+++||||||||||+|++++ |. |||+||++||| ||| +||||+||++|..++...
T Consensus 10 ~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk-~LGvtaIwL~Pi~~~~~~--- 85 (683)
T 3bmv_A 10 VNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLT-GMGVTAIWIPQPVENIYA--- 85 (683)
T ss_dssp TCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTG-GGTCCEEEECCCEEECCC---
T ss_pred CCCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhcCHHHHH-HcCCCEEEeCccccCccc---
Confidence 4579999999999999998874 43 99999999999 999 999997777776654321
Q ss_pred ecccCcccc---c-cccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccc
Q psy15051 86 FWMNCPILT---T-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDI 160 (1065)
Q Consensus 86 ~~~~~p~~~---~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~ 160 (1065)
|... + ...+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 86 -----~~~~~g~~g~~~~~GY--------d~~dy-------~~idp~~Gt~~dfk~Lv~~aH~~GikVi--------lD~ 137 (683)
T 3bmv_A 86 -----VLPDSTFGGSTSYHGY--------WARDF-------KRTNPYFGSFTDFQNLINTAHAHNIKVI--------IDF 137 (683)
T ss_dssp -----CEEETTTEEECSTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE
T ss_pred -----ccccccccCCCCCCCc--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE
Confidence 1100 0 1357898 44444 555558999999999997 799999999 998
Q ss_pred ccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy15051 161 ESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSS 240 (1065)
Q Consensus 161 ~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1065)
|+||++.. + ..++||......+.+ ..++.........||.
T Consensus 138 -------V~NHts~~----~---~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~f~-------------------- 177 (683)
T 3bmv_A 138 -------APNHTSPA----S---ETDPTYAENGRLYDN------GTLLGGYTNDTNGYFH-------------------- 177 (683)
T ss_dssp -------CTTEEEEC----C---SSCTTSTTTTCEEET------TEEEECSTTCTTCCBC--------------------
T ss_pred -------cccccccc----c---ccCcchhccCccccC------CcccccCCCCcccccc--------------------
Confidence 99998711 1 122455432221110 0111111111112221
Q ss_pred cccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccC
Q psy15051 241 EKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAW 320 (1065)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~ 320 (1065)
.... ++|....+.+| .+ +. +|||||++||+||
T Consensus 178 ----~~~~-----~~w~~~~~~~y---------~~-~~--------------------~~pdLn~~np~Vr--------- 209 (683)
T 3bmv_A 178 ----HYGG-----TDFSSYEDGIY---------RN-LF--------------------DLADLNQQNSTID--------- 209 (683)
T ss_dssp ----CSCB-----CCCSSHHHHHH---------SB-ST--------------------TEEEBCTTSHHHH---------
T ss_pred ----cCCC-----CCcCCcccccc---------cC-cC--------------------CCCCcccCCHHHH---------
Confidence 0000 11111112222 22 22 5899999999997
Q ss_pred CCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 321 NPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||+++||||||||||+||.+
T Consensus 210 ------------------~~i~~~l~~Wl~~GVDGfRlDa~~~i~~---------------------------------- 237 (683)
T 3bmv_A 210 ------------------SYLKSAIKVWLDMGIDGIRLDAVKHMPF---------------------------------- 237 (683)
T ss_dssp ------------------HHHHHHHHHHHHTTCCEEEESCGGGSCH----------------------------------
T ss_pred ------------------HHHHHHHHHHHhCCCCEEEEeccccCCH----------------------------------
Confidence 8899999999999999999999999964
Q ss_pred HHHHHHHHHHHHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------
Q psy15051 401 TYEMLYKWRTLVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV---------- 470 (1065)
Q Consensus 401 ~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~---------- 470 (1065)
+++++|++.+.+.+...++||.......... .+..|. +. ..+ ..|+|.+-..+
T Consensus 238 --~f~~~~~~~v~~~~~~~~vgE~~~~~~~~~~----~~~~~~--------~~--~~~-~~~df~~~~~l~~~~~~~~~~ 300 (683)
T 3bmv_A 238 --GWQKNFMDSILSYRPVFTFGEWFLGTNEIDV----NNTYFA--------NE--SGM-SLLDFRFSQKVRQVFRDNTDT 300 (683)
T ss_dssp --HHHHHHHHHHHHHSCCEEEECCCCCTTCCCH----HHHHHH--------HH--SSS-EEBCHHHHHHHHHHHTSCSSC
T ss_pred --HHHHHHHHHHHhcCCceEEccccCCCcccch----hhhhhh--------cc--CCC-ceECchHHHHHHHHHhcCCCC
Confidence 6888998877777668899998544221100 000000 00 011 12444432211
Q ss_pred ------HHHHHHhcCcCCcccchhhcccCccccc
Q psy15051 471 ------VSHFIYCGIVDDTSALMVMNERRLSTIA 498 (1065)
Q Consensus 471 ------~~~~Wq~~m~~~~~~~~~~~nhd~~r~~ 498 (1065)
.+..|+..+....+...++.|||++|..
T Consensus 301 ~~~l~~~l~~~~~~~~~~~~~~~fl~NHD~~R~~ 334 (683)
T 3bmv_A 301 MYGLDSMIQSTASDYNFINDMVTFIDNHDMDRFY 334 (683)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCEECSCCSSSCCSC
T ss_pred HHHHHHHHHHHHHhccchhhceeeccCCCCcccc
Confidence 4556666666666666777999999987
|
| >1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=348.38 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=179.8
Q ss_pred hhhcccceEEEecccccCcCCC---------Cc---------ccccchhhhhh--hhHhhhCCCCcCCCCCCCCCcceee
Q psy15051 26 EWWKNTVIYQILVPSFKDSNND---------GI---------GDLRGKNVRKR--YLELTLGLDPCGSSMNTDSNTIYIS 85 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~---------g~---------Gdl~gi~~kL~--yl~~~LGv~~~~~~p~~~~~~~~~~ 85 (1065)
.-|+++||||||||||+|++++ |. |||+||++||| ||| +||||+||++|..++...
T Consensus 10 ~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk-~LGvt~IwL~Pi~~~~~~--- 85 (686)
T 1d3c_A 10 QNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLT-GMGVTAIWISQPVENIYS--- 85 (686)
T ss_dssp TCCTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTG-GGTCCEEEECCCEEECCC---
T ss_pred CCCccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhcCHHHHH-hcCCCEEEeCCcccCCcc---
Confidence 3479999999999999998874 44 99999999999 999 999997777776653221
Q ss_pred ecccCccccc---cccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccc
Q psy15051 86 FWMNCPILTT---AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIE 161 (1065)
Q Consensus 86 ~~~~~p~~~~---~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~ 161 (1065)
|.... ...+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 86 -----~~~~~g~~~~~~~GY--------d~~dy-------~~idp~~Gt~~dfk~Lv~~aH~~GI~Vi--------lD~- 136 (686)
T 1d3c_A 86 -----IINYSGVNNTAYHGY--------WARDF-------KKTNPAYGTIADFQNLIAAAHAKNIKVI--------IDF- 136 (686)
T ss_dssp -----CEESSSCEECCTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-
T ss_pred -----cccccCccCCCCCCC--------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-
Confidence 11111 1356898 44444 555568999999999997 799999999 998
Q ss_pred cccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCc
Q psy15051 162 SLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSE 241 (1065)
Q Consensus 162 ~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1065)
|+||++.. + ..++||+.....+.+ ..++.........||.
T Consensus 137 ------V~NHts~~----~---~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~f~--------------------- 176 (686)
T 1d3c_A 137 ------APNHTSPA----S---SDQPSFAENGRLYDN------GTLLGGYTNDTQNLFH--------------------- 176 (686)
T ss_dssp ------CTTEEEEC----C---SSCTTSTTTTCEEET------TEEEECSTTCTTCCBC---------------------
T ss_pred ------CcCccccc----c---ccccchhhcCccccC------CcccccCCCCccCcee---------------------
Confidence 99998711 1 122455433221110 0111111011112221
Q ss_pred ccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 242 KYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
...+ ++|......+| .+ +. +|||||++||+||
T Consensus 177 ---~~~~-----~~~~~~~~~~y---------~~-~~--------------------~~pDLn~~np~Vr---------- 208 (686)
T 1d3c_A 177 ---HNGG-----TDFSTTENGIY---------KN-LY--------------------DLADLNHNNSTVD---------- 208 (686)
T ss_dssp ---CSCB-----CCSSSHHHHHH---------SB-BT--------------------TEEEBCTTSHHHH----------
T ss_pred ---cCCC-----CCcCCCccccc---------cC-cC--------------------CCCCcccCCHHHH----------
Confidence 0000 11111111222 22 22 5899999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhH
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPET 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~ 401 (1065)
++|+++++||+++||||||||||+||.+
T Consensus 209 -----------------~~i~~~l~~Wl~~GVDGfRlDa~~~i~~----------------------------------- 236 (686)
T 1d3c_A 209 -----------------VYLKDAIKMWLDLGIDGIRMNAVKHMPF----------------------------------- 236 (686)
T ss_dssp -----------------HHHHHHHHHHHHTTCCEEEETTGGGSCH-----------------------------------
T ss_pred -----------------HHHHHHHHHHHhCCCCEEEEeccccCCH-----------------------------------
Confidence 8899999999999999999999999964
Q ss_pred HHHHHHHHHHHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH-----------
Q psy15051 402 YEMLYKWRTLVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------- 470 (1065)
Q Consensus 402 ~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------- 470 (1065)
+++++|++.+.+.....++||......+.... +..|. +. ... ..|+|.+-..+
T Consensus 237 -~f~~~~~~~v~~~~~~~~vgE~~~~~~~~~~~----~~~~~--------~~--~~~-~~~df~~~~~~~~~~~~~~~~~ 300 (686)
T 1d3c_A 237 -GWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPE----NHKFA--------NE--SGM-SLLDFRFAQKVRQVFRDNTDNM 300 (686)
T ss_dssp -HHHHHHHHHHHTTSCCEEEECCCCCTTCCCHH----HHHHH--------HH--SSS-EEBCHHHHHHHHHHHTTCSSCH
T ss_pred -HHHHHHHHHHHhcCCceEEeccccCCcccchh----hhhhh--------cc--CCC-ceeCcHHHHHHHHHHhcCCCCH
Confidence 68889988887775688899975432211000 00000 00 001 13444433211
Q ss_pred -----HHHHHHhcCcCCcccchhhcccCccccch
Q psy15051 471 -----VSHFIYCGIVDDTSALMVMNERRLSTIAS 499 (1065)
Q Consensus 471 -----~~~~Wq~~m~~~~~~~~~~~nhd~~r~~s 499 (1065)
.+..|+...........++.|||++|..+
T Consensus 301 ~~l~~~l~~~~~~~~~~~~~~~fl~nHD~~R~~~ 334 (686)
T 1d3c_A 301 YGLKAMLEGSAADYAQVDDQVTFIDNHDMERFHA 334 (686)
T ss_dssp HHHHHHHHHHHHHCTTGGGCEECSCCTTSCCSSC
T ss_pred HHHHHHHHHHHhhccccccceeeccCCCcccccc
Confidence 34455555555556666779999999988
|
| >3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-32 Score=325.45 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=174.6
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.|+||+++|||||+|++|+++ |||+||+++|+||| +||||+||++|..++... -......+||
T Consensus 6 ~~~w~~~~viYei~~~~f~~~-----G~~~~i~~~l~yl~-~lG~~~i~l~Pi~~~~~~----------~~~~~~~~gY- 68 (449)
T 3dhu_A 6 TQTQLRNEMIYSVFVRNYSEA-----GNFAGVTADLQRIK-DLGTDILWLLPINPIGEV----------NRKGTLGSPY- 68 (449)
T ss_dssp -CGGGGGCCEEEECHHHHSSS-----CSHHHHHTTHHHHH-HHTCSEEEECCCSCBCST----------TCCTTTCCTT-
T ss_pred CchhhhcCEEEEEEhhhhCCC-----CCHHHHHHhHHHHH-HcCCCEEEECCccccccc----------CCCCCCCCCc-
Confidence 479999999999999999875 99999999999999 999997766666553221 0001123577
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 69 -------~~~dy-------~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi--------~D~-------V~NH~~--------- 110 (449)
T 3dhu_A 69 -------AIKDY-------RGINPEYGTLADFKALTDRAHELGMKVM--------LDI-------VYNHTS--------- 110 (449)
T ss_dssp -------SBSCT-------TSCCGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC---------
T ss_pred -------Ccccc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCcCc---------
Confidence 56665 667779999999999997 799999999 887 888865
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQR 262 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1065)
.++.||+..+ .||. ...+|. . ..
T Consensus 111 -~~~~~~~~~~-----------------------~~~~----------~~~~~~--~---------------------~~ 133 (449)
T 3dhu_A 111 -PDSVLATEHP-----------------------EWFY----------HDADGQ--L---------------------TN 133 (449)
T ss_dssp -TTSHHHHHCG-----------------------GGBC----------BCTTSC--B---------------------CC
T ss_pred -CccchhhcCc-----------------------cceE----------ECCCCC--c---------------------CC
Confidence 2233332210 1220 000000 0 00
Q ss_pred cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHH
Q psy15051 263 VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLL 342 (1065)
Q Consensus 263 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1065)
. ...+ .++||||+.||+|| ++|+
T Consensus 134 ~----------~~~w--------------------~~~~dLn~~np~Vr---------------------------~~l~ 156 (449)
T 3dhu_A 134 K----------VGDW--------------------SDVKDLDYGHHELW---------------------------QYQI 156 (449)
T ss_dssp S----------STTC--------------------TTCEEBCTTSHHHH---------------------------HHHH
T ss_pred C----------CCCC--------------------CCCCccCCCCHHHH---------------------------HHHH
Confidence 0 0011 36899999999997 8899
Q ss_pred HHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccCC
Q psy15051 343 CILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSAD 421 (1065)
Q Consensus 343 ~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~~ 421 (1065)
+++++|+++ |||||+|++++|.. ++++++|+.+.+ .|+..++
T Consensus 157 ~~l~~w~~~-vDGfRlDaa~~~~~------------------------------------~f~~~~~~~~~~~~p~~~~~ 199 (449)
T 3dhu_A 157 DTLLYWSQF-VDGYRCDVAPLVPL------------------------------------DFWLEARKQVNAKYPETLWL 199 (449)
T ss_dssp HHHHHHTTT-CSEEEETTGGGSCH------------------------------------HHHHHHHHHHHHHSTTCEEE
T ss_pred HHHHHHHHh-CCEEEEEChhhCCH------------------------------------HHHHHHHHHHHhhCCCeEEE
Confidence 999999999 99999999999942 889999887765 5888899
Q ss_pred CCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH---------------HHHHHHhcCcCCcccc
Q psy15051 422 RQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV---------------VSHFIYCGIVDDTSAL 486 (1065)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~---------------~~~~Wq~~m~~~~~~~ 486 (1065)
||...+..... +.. ..+ ..+..++-...++++++|.+...+ .+...+...+......
T Consensus 200 gE~~~~~~~~~--~~~-~g~-----~~~~~~~l~~~fd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 271 (449)
T 3dhu_A 200 AESAGSGFIEE--LRS-QGY-----TGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFPGNYVKM 271 (449)
T ss_dssp ECCCCHHHHHH--HHH-TTC-----CCCCHHHHHTTCSEEEGGGTHHHHHHHHTTSSCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred eccCCchHHHH--HHh-cCc-----cccccchhhhccCccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcCCchhhe
Confidence 99865432110 000 000 000000001245677888765332 1122222333434444
Q ss_pred hhhcccCccccchhhhh
Q psy15051 487 MVMNERRLSTIASRTMA 503 (1065)
Q Consensus 487 ~~~~nhd~~r~~sr~~~ 503 (1065)
.+..|||.+|..++++.
T Consensus 272 ~fl~NHD~~R~~~~~~~ 288 (449)
T 3dhu_A 272 RFLENHDNARMMSLMHS 288 (449)
T ss_dssp ECSCCTTSCCHHHHCCS
T ss_pred eecccCCccchhhhcCC
Confidence 55699999999998864
|
| >3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=335.85 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=102.4
Q ss_pred ccCchhhhcccceEEEeccc-----ccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc
Q psy15051 21 RCNQKEWWKNTVIYQILVPS-----FKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT 95 (1065)
Q Consensus 21 ~~~~~~w~~~~viYqi~~~~-----F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~ 95 (1065)
....|+||+++||||+|+++ |.++.+...|||+||+++||||| +||||+||++|..++. +
T Consensus 113 ~~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~LdyLk-~LGvtaIwL~Pi~~~~--------------s 177 (599)
T 3bc9_A 113 YPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELA-EAGFTAVWLPPANKGM--------------A 177 (599)
T ss_dssp CCCCCGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHHHHHHH-HHTCCEEECCCCSEET--------------T
T ss_pred cCCCchhhcCceEEEEeeccccccccccCCCCCCCCHHHHHHHHHHHH-HcCCCEEEECCcccCC--------------C
Confidence 34457999999999999888 98865444599999999999999 9999955544444311 2
Q ss_pred cccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccc
Q psy15051 96 AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMC 174 (1065)
Q Consensus 96 ~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~ 174 (1065)
+..+|||+ +.||+++..|+++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 178 ~~~~~GYd--~~dy~~l~e~~q~----g~idp~~Gt~~dfk~Lv~~aH~~GI~Vi--------lD~-------V~NH~~- 235 (599)
T 3bc9_A 178 GIHDVGYG--TYDLWDLGEFDQK----GTVRTKYGTKGELENAIDALHNNDIKVY--------FDA-------VLNHRM- 235 (599)
T ss_dssp GGGCCSCS--EEETTCSSCSCBT----TBSSBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC-
T ss_pred CCCCCCCC--hhhcccccccccc----cccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcCCCC-
Confidence 34578886 9999998887443 269999999999999997 799999999 998 999974
Q ss_pred cccCcccccCccccccCCC
Q psy15051 175 LTDSKHQCQGQNFLFQGRP 193 (1065)
Q Consensus 175 ~~~~~~~~~~~~~~f~~~~ 193 (1065)
..++|+||+...
T Consensus 236 -------~~~~~~wf~~~~ 247 (599)
T 3bc9_A 236 -------GADYAETVLLDE 247 (599)
T ss_dssp -------SCSEEEEEEBCT
T ss_pred -------CCcCCccccccc
Confidence 125688997643
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=317.35 Aligned_cols=333 Identities=13% Similarity=0.101 Sum_probs=196.7
Q ss_pred cHHhhh-HHHHHcCcCEEEeCCCCcCCCC-------CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q psy15051 598 GIIEKI-DYLKELGVETLWLTPFYSGPNG-------DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKN 669 (1065)
Q Consensus 598 Gl~~kL-dYLk~LGvnaI~L~PI~~~~~~-------~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~ 669 (1065)
.|++++ +||++||||+|||+|+.++... ++||++.|| +|+|+|||++|||+||++|
T Consensus 23 ~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy-~i~~~~Gt~~df~~lv~~a--------------- 86 (496)
T 4gqr_A 23 DIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY-KLCTRSGNEDEFRNMVTRC--------------- 86 (496)
T ss_dssp HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc-eeCCCCCCHHHHHHHHHHH---------------
Confidence 666655 7999999999999999997421 259999995 7999999999999999999
Q ss_pred cccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccC
Q psy15051 670 RSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKI 749 (1065)
Q Consensus 670 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~ 749 (1065)
|++||+||+|+|+||++.+++|+.......
T Consensus 87 --------------------------------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~ 116 (496)
T 4gqr_A 87 --------------------------------------------------NNVGVRIYVDAVINHMCGNAVSAGTSSTCG 116 (496)
T ss_dssp --------------------------------------------------HHTTCEEEEEECCSEEEETTSCSBSCBTTC
T ss_pred --------------------------------------------------HHCCCEEEEEEccCcCCCccccccccCcCC
Confidence 777778888888888888887765432211
Q ss_pred CCC---------Ccceee--cCCCCCCCCCCCCCCcc--------------ccCCCHHHHHHHHHHHHh-----------
Q psy15051 750 DPY---------TNYYVW--KDGLNGKPGTPPNNWKH--------------INITSREVMRSQKDVVQS----------- 793 (1065)
Q Consensus 750 ~~~---------~d~y~~--~~~~dG~p~~~~~~W~~--------------ln~~n~~v~~~l~~~lk~----------- 793 (1065)
..+ .+|..+ ..............|.. ||+.||+|+++|.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dln~~n~~V~~~l~~~~~~~~~~gvDGfR~ 196 (496)
T 4gqr_A 117 SYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRL 196 (496)
T ss_dssp CCBBTTTTBBTTTTBCGGGBSTTTCCSSSSBCCCTTCHHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccccccCCCCCCCccccCCCcccCCCCcccccCCcceeEeeecCCCCccccCCHHHHHHHHHHHHHHHhcCcceeec
Confidence 100 001000 00000000001122321 999999999999998332
Q ss_pred --------------------c-------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcC--CChHH
Q psy15051 794 --------------------F-------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGAT--SNAKD 844 (1065)
Q Consensus 794 --------------------~-------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~ 844 (1065)
+ .+..++++|.+....+....+...+....+++.+...+...+... .....
T Consensus 197 D~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 276 (496)
T 4gqr_A 197 DASKHMWPGDIKAILDKLHNLNSNWFPAGSKPFIYQEVIDLGGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMSY 276 (496)
T ss_dssp TTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSSSCCGGGGTTTSEEECHHHHHHHHHHHTTGGGCCGGG
T ss_pred ccccccchHHHHHHHHHHHhhccchhcccCcceEEeeeeccCccccchhhhcCCCcccchhhHHHHHHHHhhccchhHHH
Confidence 1 125689999987644333333222222345556666666555321 12222
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH--------HHHHHHHHHHHhCC-CeEEEEcccccCccCCCCccC
Q psy15051 845 LENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP--------DLVDAMNMLTLLLP-GTAVTFAGDELGMESPILRYE 915 (1065)
Q Consensus 845 l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~--------~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~~~~~~ 915 (1065)
+....... ........+.|++|||++|+.+..+. ++.++++++++++| |+|+||+|.|.++.+......
T Consensus 277 ~~~~~~~~--~~~~~~~~v~Fv~NHD~~R~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~G~P~i~~g~~~~~~~~~g~~~ 354 (496)
T 4gqr_A 277 LKNWGEGW--GFVPSDRALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWPRQFQNGNDV 354 (496)
T ss_dssp GGGTTGGG--TCCCGGGEEECSCCTTGGGSSSTTGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCCCEETTEET
T ss_pred HHhhhhhh--ccCCccceeeecccccccccccccCCccccccCHHHHHHHHHHHHhccCCccceeecccccccccCCCCC
Confidence 21111111 11222334459999999999877542 34566777777777 999998888776654310000
Q ss_pred CCCCccccccccccccccccCCCCCcCCCCcccc-cCCCCC----CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHH
Q psy15051 916 DQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQEN-AGFSKA----KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTL 990 (1065)
Q Consensus 916 ~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~-~gFs~~----~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~L 990 (1065)
...+.++.+..... ..+... ..| .....+..+++|+++
T Consensus 355 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~i~~l~~~ 397 (496)
T 4gqr_A 355 --------------------NDWVGPPNNNGVIKEVTINPDTTCGNDW-----------------VCEHRWRQIRNMVIF 397 (496)
T ss_dssp --------------------TTTCCSSEETTEECCCCBCTTSCBCTTB-----------------CCGGGSHHHHHHHHH
T ss_pred --------------------CccccccCCCccccccccCccccccchh-----------------hHHHHHHHHHHHHHH
Confidence 00111111111000 000000 111 112245678999999
Q ss_pred HHhcccccCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 991 RATSGAVRMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 991 Rk~~paL~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
|+.... .+...+...+++++||.| +++++||+|++.++++++++.
T Consensus 398 r~~~~g--~~~~~~~~~~~~~iaF~R---g~~~~V~~N~~~~~~~~~~~t 442 (496)
T 4gqr_A 398 RNVVDG--QPFTNWYDNGSNQVAFGR---GNRGFIVFNNDDWSFSLTLQT 442 (496)
T ss_dssp HHHTTT--CCEEEEEECSSSEEEEEE---TTTEEEEEECSSSCEEEEEEC
T ss_pred HhhccC--CceEEEEeCCCCEEEEEe---CCcEEEEEECCCCCEEEEEEc
Confidence 986421 222344455678999999 456899999999988887653
|
| >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-33 Score=331.52 Aligned_cols=271 Identities=11% Similarity=0.016 Sum_probs=184.9
Q ss_pred EEecccccCcC-CCCcccccchhhhhh-hhHhhhCCCCcCCCCCCCCCcceeeecccCccc-cccccccCccceeecccc
Q psy15051 35 QILVPSFKDSN-NDGIGDLRGKNVRKR-YLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL-TTAVKTWSRRWIVVNHEQ 111 (1065)
Q Consensus 35 qi~~~~F~d~~-~~g~Gdl~gi~~kL~-yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~-~~~~~~~gy~~~v~d~~~ 111 (1065)
||++++|.|++ + |+|+||+++|+ ||| +| || ++|++ |++ .++..+||| +
T Consensus 4 ~i~~~sf~d~~~g---g~~~~i~~~ld~yL~-~L-v~---------------~IwL~-Pi~~~~~~~~~GY--------~ 54 (504)
T 1r7a_A 4 KVQLITYADRLGD---GTIKSMTDILRTRFD-GV-YD---------------GVHIL-PFFTPFDGADAGF--------D 54 (504)
T ss_dssp SCEEEECSSSBSS---SSHHHHHHHHHHHST-TT-CC---------------EEEEC-CCEECSSSSSTTS--------S
T ss_pred cEeeeeeEeccCC---CCHHHHHHHHHHHHH-HH-hC---------------eEEEC-CcccCCCCCCCCC--------C
Confidence 57888998887 5 89999999998 999 99 99 55555 777 666678999 6
Q ss_pred cCCCccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccC
Q psy15051 112 ISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQG 191 (1065)
Q Consensus 112 v~~~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~ 191 (1065)
+.+| ++|||+|||++||++||+ ||+|| +|+ |+||++ .+|+||++
T Consensus 55 ~~dy-------~~idp~~Gt~~df~~Lv~----Gi~Vi--------lD~-------V~NH~s----------~~~~~f~~ 98 (504)
T 1r7a_A 55 PIDH-------TKVDERLGSWDDVAELSK----THNIM--------VDA-------IVNHMS----------WESKQFQD 98 (504)
T ss_dssp CSEE-------EEECTTTCCHHHHHHHHT----TSEEE--------EEE-------ECSEEE----------TTSHHHHH
T ss_pred ccCh-------hhcCcccCCHHHHHHHHh----CCEEE--------EEE-------CCCcCC----------CcchHHHH
Confidence 6666 667779999999999998 99999 888 999976 67888874
Q ss_pred CC-----cceeccccC-cccccCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCCcccccccccccCCcchh-hhcccc
Q psy15051 192 RP-----VNLMSYVLG-RELRKHPPHSTPHLPHVCCPSGLPSTSRPDIE-GEGPSSEKYWGDILERTVSSNSL-QALQRV 263 (1065)
Q Consensus 192 ~~-----~~~~~~~~~-~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (1065)
.. ..+.+|+.. +. .+ ++.. +...| ...+. +..+ .+ ++|. ...+++
T Consensus 99 ~~~~~~~~~y~~~y~~~~~-~~-~~~~-~~~~~-----------~~~f~~~~~~---~~----------~~~~~~~~~~~ 151 (504)
T 1r7a_A 99 VLAKGEESEYYPMFLTMSS-VF-PNGA-TEEDL-----------AGIYRPRPGL---PF----------THYKFAGKTRL 151 (504)
T ss_dssp HHHHGGGSTTGGGBCBHHH-HC-TTCB-CHHHH-----------HTSCCSSSSC---SE----------EEEEETTEEEE
T ss_pred HhhcCCCCccccceEeccc-cC-cCCC-CCcch-----------hhhcCCCCCC---CC----------CCceEcCCceE
Confidence 21 111222110 00 00 0000 00000 00000 0000 00 0000 011234
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
| ||.|. ..|||||++||+|| ++|++
T Consensus 152 ~---------~~~f~-------------------~~~pdLn~~np~Vr---------------------------~~i~~ 176 (504)
T 1r7a_A 152 V---------WVSFT-------------------PQQVDIDTDSDKGW---------------------------EYLMS 176 (504)
T ss_dssp E---------ECSSS-------------------TTEEEBCTTSHHHH---------------------------HHHHH
T ss_pred E---------ECccC-------------------CCCCccCCCCHHHH---------------------------HHHHH
Confidence 4 88887 79999999999997 88999
Q ss_pred HHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCCC
Q psy15051 344 ILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADRQ 423 (1065)
Q Consensus 344 ~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~ 423 (1065)
+++||+++||||||+|||++|+|+.+ ..|.++||+++++++||+.+++ |+..+|||
T Consensus 177 ~~~~W~~~gvDGfR~Da~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~-~~~~~igE 232 (504)
T 1r7a_A 177 IFDQMAASHVSYIRLDAVGYGAKEAG-----------------------TSCFMTPKTFKLISRLREEGVK-RGLEILIE 232 (504)
T ss_dssp HHHHHHHTTCCEEEEETGGGSCCCTT-----------------------SCSSSCHHHHHHHHHHHHHHHH-TTCEEEEC
T ss_pred HHHHHHHcCCCEEEEcccccccccCC-----------------------CcccCchhHHHHHHHHHHHhCc-CCcEEEEE
Confidence 99999999999999999999998532 0156789999999999999887 68899999
Q ss_pred CCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHHHhcCcCCcccchhhcccC
Q psy15051 424 PSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFIYCGIVDDTSALMVMNERR 493 (1065)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~Wq~~m~~~~~~~~~~~nhd 493 (1065)
........ .....+++++|+|.+.... .+..|...++. ..-.+..|||
T Consensus 233 ~~~~~~~~--------------------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~p~--~~~nfl~nHD 290 (504)
T 1r7a_A 233 VHSYYKKQ--------------------VEIASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRPN--NAVTVLDTHD 290 (504)
T ss_dssp CCSCHHHH--------------------HHHHTTSSEEEECSHHHHHHHHHHHCCCHHHHHHHHHSCS--SEEECSCCSS
T ss_pred eccccccc--------------------cccCCccceEECchhhhhhhhhhhccchHHHHHHHHhCcc--ccceecccCC
Confidence 86531100 0012467899999876432 34567766653 2234679999
Q ss_pred ccccc
Q psy15051 494 LSTIA 498 (1065)
Q Consensus 494 ~~r~~ 498 (1065)
..|..
T Consensus 291 ~~r~~ 295 (504)
T 1r7a_A 291 GIGVI 295 (504)
T ss_dssp CBCST
T ss_pred ccccc
Confidence 99965
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=325.44 Aligned_cols=122 Identities=17% Similarity=0.345 Sum_probs=96.6
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCC-CCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC-------
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDL-RGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG------- 625 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl-~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~------- 625 (1065)
+.||++.||||+++ +|.....++.+.. + ||+++|+|||+||||+|||+||++++..
T Consensus 605 ~~~~~~~ViYe~f~-~~~s~~~~g~~~~~~---------------gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~ 668 (844)
T 3aie_A 605 NAALDSRVMFEGFS-NFQAFATKKEEYTNV---------------VIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSV 668 (844)
T ss_dssp SHHHHTCCEEECCC-TTCCCCSSGGGCHHH---------------HHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGT
T ss_pred CCccCceEEEEeCC-CcccCCCCCCcccHH---------------HHHHHHHHHHHCCCCeEEECCcccCCCCCcccccc
Confidence 34688999999988 4543332322222 4 9999999999999999999999999865
Q ss_pred -CCCCcCCCCcccC----CCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCcccc
Q psy15051 626 -DIGYDISNHTEVG----KDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYA 700 (1065)
Q Consensus 626 -~~GY~~~dy~~id----p~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 700 (1065)
+|||++.|||+|+ |+|||++||++||++|
T Consensus 669 ~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~---------------------------------------------- 702 (844)
T 3aie_A 669 IQNGYAFTDRYDLGISKPNKYGTADDLVKAIKAL---------------------------------------------- 702 (844)
T ss_dssp TTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHH----------------------------------------------
T ss_pred CCCCCccccCccCCCCCCCCCCCHHHHHHHHHHH----------------------------------------------
Confidence 7999999999999 9999999999999999
Q ss_pred CCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhcc-CCCCCcce
Q psy15051 701 GSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQK-IDPYTNYY 756 (1065)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~~-~~~~~d~y 756 (1065)
|++||+||+|+|+||++ ..|+||..++.. ..++.+++
T Consensus 703 -------------------H~~GI~VilD~V~NH~~~~d~~~~~~~~~~~~~~~~~~~~ 742 (844)
T 3aie_A 703 -------------------HSKGIKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGS 742 (844)
T ss_dssp -------------------HHTTCEEEEEECCSEECCCSEEEEEEEEEECTTSCBCTTC
T ss_pred -------------------HHCCCEEEEEEccCcccCCCCCcceeEeeccCCCCccccc
Confidence 88888888889999995 667787654332 33344443
|
| >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=314.97 Aligned_cols=215 Identities=18% Similarity=0.275 Sum_probs=148.2
Q ss_pred cccceEEEecccccCcCCCC-cccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc-ccCccce
Q psy15051 29 KNTVIYQILVPSFKDSNNDG-IGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK-TWSRRWI 105 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g-~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~-~~gy~~~ 105 (1065)
+.++||||||++|++++++| .|||+||+++| +||| +|||| ++|++ |++.++.. +|||
T Consensus 130 ~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~-~lGv~---------------~i~l~-Pi~~~~~~~~~GY--- 189 (617)
T 1m7x_A 130 APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAK-WMGFT---------------HLELL-PINEHPFDGSWGY--- 189 (617)
T ss_dssp SCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHH-HTTCS---------------EEEES-CCEECSCGGGTTS---
T ss_pred CCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHH-HcCCC---------------EEEec-ccccCCCCCCCCc---
Confidence 67999999999999988777 89999999997 9999 99999 44444 66665544 6999
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 190 -----~~~~y-------~~~~~~~Gt~~~~~~lv~~~H~~Gi~Vi--------lD~-------V~NH~~----------- 231 (617)
T 1m7x_A 190 -----QPTGL-------YAPTRRFGTRDDFRYFIDAAHAAGLNVI--------LDW-------VPGHFP----------- 231 (617)
T ss_dssp -----SCSEE-------EEECGGGSCHHHHHHHHHHHHHTTCEEE--------EEE-------CTTSCC-----------
T ss_pred -----ccccC-------CccCccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ecCccc-----------
Confidence 66666 667779999999999997 699999999 777 777763
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcccc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (1065)
+..|+|. .++|. .+| +.+. ....
T Consensus 232 ----------------------------~~~~~~~------------~~d~~----~~y~~~~~------------~~g~ 255 (617)
T 1m7x_A 232 ----------------------------TDDFALA------------EFDGT----NLYEHSDP------------REGY 255 (617)
T ss_dssp ----------------------------CSTTSST------------TGGGS----CSSBCC------------------
T ss_pred ----------------------------Cccchhh------------hcCCC----ccccccCc------------ccCC
Confidence 1112222 00110 001 0000 0000
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLC 343 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1065)
.+.| ..++||++||+|| ++|++
T Consensus 256 ----------------------------~~~w---~~~~ln~~~p~v~---------------------------~~i~~ 277 (617)
T 1m7x_A 256 ----------------------------HQDW---NTLIYNYGRREVS---------------------------NFLVG 277 (617)
T ss_dssp ------------------------------------CCCBCTTSHHHH---------------------------HHHHH
T ss_pred ----------------------------cCCC---CCceecCCCHHHH---------------------------HHHHH
Confidence 0011 2357999999997 78999
Q ss_pred HHHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCC
Q psy15051 344 ILEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSAD 421 (1065)
Q Consensus 344 ~l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~ 421 (1065)
+++||+++ ||||||+|+|++|++.. .+..+ |....+... ..+++++++|+++||+.+.+. |+..+|
T Consensus 278 ~~~~W~~~~gvDGfR~D~~~~~~~~d----~~~~~---g~~~~~~~~-----~~~~~~~~~fl~~~~~~v~~~~p~~~~i 345 (617)
T 1m7x_A 278 NALYWIERFGIDALRVDAVASMIYRD----YSRKE---GEWIPNEFG-----GRENLEAIEFLRNTNRILGEQVSGAVTM 345 (617)
T ss_dssp HHHHHHHHSCCCEEEECCSHHHHCC---------------------C-----TTCCHHHHHHHHHHHHHHHHSSTTCEEE
T ss_pred HHHHHHHHhCcCEEEEcchhhhhhcc----ccccc---ccccccccc-----ccCCchHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999986 99999999999987521 11111 111111111 236789999999999988765 899999
Q ss_pred CCCCcc
Q psy15051 422 RQPSCA 427 (1065)
Q Consensus 422 ~~~~~~ 427 (1065)
||....
T Consensus 346 aE~~~~ 351 (617)
T 1m7x_A 346 AEESTD 351 (617)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 997543
|
| >1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=309.97 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=91.8
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
++.||||+|+++|.+ +.|+|+||++|||||| +||||+||++|+.++. ++ .+|||. +.|
T Consensus 5 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~-~LGvt~IwL~Pi~~~~--------------~~-~~~GY~--~~d 62 (485)
T 1wpc_A 5 TNGTMMQYFEWYLPN----DGNHWNRLNSDASNLK-SKGITAVWIPPAWKGA--------------SQ-NDVGYG--AYD 62 (485)
T ss_dssp CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHH-HHTCCEEEECCCSEES--------------ST-TCCSCS--EEE
T ss_pred CCceEEEEEecCCCC----CCCcHHHHHHHHHHHH-HcCCCEEEeCCcccCC--------------CC-CCCCCC--eec
Confidence 478999999999974 3499999999999999 9999955555444321 12 478886 999
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
|+++..|.++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ ..++|+
T Consensus 63 y~~~~~~~q~----~~idp~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------~~~~~~ 115 (485)
T 1wpc_A 63 LYDLGEFNQK----GTVRTKYGTRSQLQAAVTSLKNNGIQVY--------GDV-------VMNHKG--------GADATE 115 (485)
T ss_dssp TTCSSCSCBT----TBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------SCSEEE
T ss_pred cccccccccc----CccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccC--------CCCcCc
Confidence 9988776221 369999999999999997 799999999 998 999984 125788
Q ss_pred cccCC
Q psy15051 188 LFQGR 192 (1065)
Q Consensus 188 ~f~~~ 192 (1065)
||+..
T Consensus 116 ~f~~~ 120 (485)
T 1wpc_A 116 MVRAV 120 (485)
T ss_dssp EEEEE
T ss_pred ceeEE
Confidence 98764
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=300.43 Aligned_cols=97 Identities=25% Similarity=0.608 Sum_probs=88.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcC-CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~-~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
||+++|+|||+||||+|||+||+++ +..+|||++.||++|||+|||++||++||++|
T Consensus 18 gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aa---------------------- 75 (720)
T 1iv8_A 18 DVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETA---------------------- 75 (720)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHH----------------------
Confidence 9999999999999999999999997 45679999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhHhhhc--cCCCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFIKSAQ--KIDPY 752 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~~~~~--~~~~~ 752 (1065)
|++||+||+|+|+||++ .+|+||.+... ..++|
T Consensus 76 -------------------------------------------H~~GIkVIlDvV~NHta~~~~~~wf~d~l~~G~~s~y 112 (720)
T 1iv8_A 76 -------------------------------------------HTIGLGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXY 112 (720)
T ss_dssp -------------------------------------------HHTTCEEEEEECCSEEECCTTCHHHHHHHHHGGGSTT
T ss_pred -------------------------------------------HHCCCEEEEEeccccccCccccHHHHHhhhccccccc
Confidence 89999999999999999 89999987643 25789
Q ss_pred Ccceeec
Q psy15051 753 TNYYVWK 759 (1065)
Q Consensus 753 ~d~y~~~ 759 (1065)
.+||.+.
T Consensus 113 ~d~f~~~ 119 (720)
T 1iv8_A 113 YTYFDFF 119 (720)
T ss_dssp GGGBCBC
T ss_pred ccceeec
Confidence 9998774
|
| >1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=295.06 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=77.9
Q ss_pred EEecccc-cCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccC
Q psy15051 35 QILVPSF-KDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQIS 113 (1065)
Q Consensus 35 qi~~~~F-~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~ 113 (1065)
+|++++| .|+++|+.|||+||+++|+||| +||||+| |++ |++.++ .+||| ++.
T Consensus 2 ~v~~~~F~~d~~~d~~G~~~gi~~~ldyl~-~lGv~~i---------------~l~-Pi~~~~-~~~gY--------~~~ 55 (405)
T 1ht6_A 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIA-AAGVTHV---------------WLP-PPSHSV-SNEGY--------MPG 55 (405)
T ss_dssp CCEEECCCTTGGGCTTCHHHHHHTTHHHHH-HTTCCEE---------------EEC-CCSCBS-STTSS--------SBC
T ss_pred ccEEEeEEcCCCCCCCcCHHHHHHHHHHHH-HcCCCEE---------------EeC-CCccCC-CCCCC--------Ccc
Confidence 4789999 8999999999999999999999 9999944 444 555554 46899 666
Q ss_pred CCccccccccccc-cccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 114 RLPTRTVSSLNII-CKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 114 ~~~~~~~~~~~i~-~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+| ++|| |+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 56 d~-------~~id~~~~Gt~~d~~~lv~~~h~~Gi~Vi--------lD~-------V~NH~~ 95 (405)
T 1ht6_A 56 RL-------YDIDASKYGNAAELKSLIGALHGKGVQAI--------ADI-------VINHRC 95 (405)
T ss_dssp CT-------TCGGGCTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred cc-------ccCCCccCCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcCccc
Confidence 66 6777 79999999999997 799999999 888 999986
|
| >3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=308.82 Aligned_cols=275 Identities=12% Similarity=0.005 Sum_probs=176.9
Q ss_pred hhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRW 104 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~ 104 (1065)
..||..++||||||++|++++++ .|||+||+++||||| +||||.||++|..++....- +...-.+.....++|-.|
T Consensus 226 r~~~~~~~iYEi~~rsf~~~~~~-~Gd~~gi~~~LdyLk-~LGvt~I~L~Pi~~~~~~~~--~g~~n~~~~~~~d~GspY 301 (695)
T 3zss_A 226 RERALYGAWYEFFPRSEGTPHTP-HGTFRTAARRLPAIA-AMGFDVVYLPPIHPIGTTHR--KGRNNTLSATGDDVGVPW 301 (695)
T ss_dssp CHHHHCEEEEECCGGGSCCSSCC-SCCHHHHGGGHHHHH-HTTCCEEEECCCSCBCCTTC--CCGGGCSSCCTTCCCCTT
T ss_pred ccccccceEEEEehhHhcCCCCC-CCCHHHHHHHHHHHH-hCCCCEEEECCcccCCcccc--ccccccccccccCCCCcc
Confidence 35788999999999999998876 899999999999999 99999888777776532100 000000111224566222
Q ss_pred eeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCccccc
Q psy15051 105 IVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQ 183 (1065)
Q Consensus 105 ~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~ 183 (1065)
++.| +..+| ++|||+|||++||++||+ ||++||+|| +|+ |+||+
T Consensus 302 ~i~d--~~~~y-------~~idp~~Gt~edfk~LV~~aH~~GI~Vi--------lD~-------V~Nhs----------- 346 (695)
T 3zss_A 302 AIGS--PEGGH-------DSIHPALGTLDDFDHFVTEAGKLGLEIA--------LDF-------ALQCS----------- 346 (695)
T ss_dssp SBCB--TTBCT-------TSCCTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCEEC-----------
T ss_pred cccC--CCCCc-------cccCcccCCHHHHHHHHHHHHHCCCEEE--------EEe-------eccCC-----------
Confidence 2433 11125 677889999999999997 799999999 887 88874
Q ss_pred CccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcccc
Q psy15051 184 GQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRV 263 (1065)
Q Consensus 184 ~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1065)
.+|+||+.. ..||. ...+|... |... .
T Consensus 347 ~~~~~~~~~-----------------------~dwf~----------~~~dg~~~----~~~~------------~---- 373 (695)
T 3zss_A 347 PDHPWVHKH-----------------------PEWFH----------HRPDGTIA----HAEN------------P---- 373 (695)
T ss_dssp TTSTHHHHC-----------------------GGGSC----------CCTTSCCC----CEEE------------T----
T ss_pred ccchhhhcc-----------------------cceee----------ecCCCCcc----cCCC------------C----
Confidence 355666541 11220 00001000 0000 0
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CcccccccccccCCCCCccccccchhhhHHHHHH
Q psy15051 264 YPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPN--PKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLL 341 (1065)
Q Consensus 264 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~n--p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1065)
...| .+.+|||+.| |+|+ ++|
T Consensus 374 ----------~~~~--------------------~~~~dLn~~n~~p~V~---------------------------~~l 396 (695)
T 3zss_A 374 ----------PKKY--------------------QDIYPIAFDADPDGLA---------------------------TET 396 (695)
T ss_dssp ----------TEEE--------------------TTCEECCCSSCHHHHH---------------------------HHH
T ss_pred ----------Cccc--------------------cccccccccCCcHHHH---------------------------HHH
Confidence 0011 2567899999 9997 889
Q ss_pred HHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHh-hCCccC
Q psy15051 342 LCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEK-FGNQSA 420 (1065)
Q Consensus 342 ~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~-~~~~~~ 420 (1065)
+++++||++.||||||+|+++++. ++|+++|++.+.+ +|+..+
T Consensus 397 ~~~l~~Wi~~GVDGfRlD~a~~~~------------------------------------~~f~~~~~~~v~~~~pd~~~ 440 (695)
T 3zss_A 397 VRILRHWMDHGVRIFRVDNPHTKP------------------------------------VAFWERVIADINGTDPDVIF 440 (695)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGSC------------------------------------HHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHhCCCEEEecCcchhh------------------------------------HHHHHHHHHHHHhhCCCceE
Confidence 999999999999999999987652 3899999887665 599999
Q ss_pred CCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhh-----hHH-HHHHHHhcCcCCcccchhhcccCc
Q psy15051 421 DRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLL-----HQV-VSHFIYCGIVDDTSALMVMNERRL 494 (1065)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~-----~~~-~~~~Wq~~m~~~~~~~~~~~nhd~ 494 (1065)
+||.... ......+ .+ ..+++.|+|... .+. .+..+...+..-..++.+.+|||+
T Consensus 441 vgE~~~~-p~~~~~l---------------~~---~gfd~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~~~FvdNHD~ 501 (695)
T 3zss_A 441 LAEAFTR-PAMMATL---------------AQ---IGFQQSYTYFTWRNTKQELTEYLTELSGEAASYMRPNFFANTPDI 501 (695)
T ss_dssp EECCCSC-HHHHHHH---------------HH---TTCSEEECSGGGCCSHHHHHHHHHHHTTGGGGTCCEEEESCBTTB
T ss_pred EEeecCC-hHHhhhh---------------hc---cCcCceechhhhhcchhHHHHHHHhhhhhhhhcccceecccCCCc
Confidence 9999632 1111111 00 012333443211 011 334444444444566667799999
Q ss_pred cccchhhhh
Q psy15051 495 STIASRTMA 503 (1065)
Q Consensus 495 ~r~~sr~~~ 503 (1065)
.|..+++++
T Consensus 502 ~R~~s~~g~ 510 (695)
T 3zss_A 502 LHAYLQHGG 510 (695)
T ss_dssp CCHHHHHHC
T ss_pred cchhcccch
Confidence 999988875
|
| >1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=294.21 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=84.6
Q ss_pred cccceEEEecccccCcCCCCccc-ccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc--ccCccce
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGD-LRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK--TWSRRWI 105 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gd-l~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~--~~gy~~~ 105 (1065)
++.||||+|+++|.++ || |+||+++||||| +||||+ +|++ |+++++.. +|||.
T Consensus 8 ~~~viyq~f~w~~~~~-----G~~~~gi~~~Ldyl~-~lGvt~---------------I~l~-Pi~~~~~~~~~~gY~-- 63 (435)
T 1mxg_A 8 EGGVIMQAFYWDVPGG-----GIWWDHIRSKIPEWY-EAGISA---------------IWLP-PPSKGMSGGYSMGYD-- 63 (435)
T ss_dssp GTCCEEECCCTTCCCS-----SCHHHHHHHHHHHHH-HHTCCE---------------EECC-CCSEETTGGGCCSSS--
T ss_pred CCcEEEEEEEeccCCC-----CCHHHHHHHHHHHHH-HcCCCE---------------EEeC-CcccCCCCCCCCCcC--
Confidence 6799999999999653 89 999999999999 999994 4444 55555544 47775
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
+.||+++..|.++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 ~~dy~~lg~~~~~----~~id~~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-------V~NH~~ 113 (435)
T 1mxg_A 64 PYDYFDLGEYYQK----GTVETRFGSKEELVRLIQTAHAYGIKVI--------ADV-------VINHRA 113 (435)
T ss_dssp EEETTCSSCSCBT----TBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred ccccccccccccc----CcCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------Cccccc
Confidence 9999998876221 379999999999999997 699999999 888 899876
|
| >1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-30 Score=304.00 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=91.1
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
++.||||+|.+.+.+ +.|+|+||++|||||| +||||+||++|+.++. ++ .+|||. +.|
T Consensus 3 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~-~LGvt~I~l~Pi~~~~--------------~~-~~~GY~--~~d 60 (480)
T 1ud2_A 3 LNGTMMQYYEWHLEN----DGQHWNRLHDDAAALS-DAGITAIWIPPAYKGN--------------SQ-ADVGYG--AYD 60 (480)
T ss_dssp CCCCEEECCCTTCCC----SSCHHHHHHHHHHHHH-HHTCCEEEECCCSEES--------------ST-TCCSSS--EEE
T ss_pred CCceEEEeeeccCCC----CCCcHHHHHHHHHHHH-HcCCCEEEeCCcccCC--------------CC-CCCCcC--ccc
Confidence 368999999998865 2499999999999999 9999955555544421 11 568886 999
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
|+++..|.++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ ..++|+
T Consensus 61 y~~~~~~~~~----~~idp~~Gt~~df~~lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------~~~~~~ 113 (480)
T 1ud2_A 61 LYDLGEFNQK----GTVRTKYGTKAQLERAIGSLKSNDINVY--------GDV-------VMNHKM--------GADFTE 113 (480)
T ss_dssp TTCSSCSCBT----TBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------CCSEEE
T ss_pred hhhccccccc----CccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCccc--------cccccc
Confidence 9988876221 369999999999999997 799999999 998 999984 125788
Q ss_pred cccCC
Q psy15051 188 LFQGR 192 (1065)
Q Consensus 188 ~f~~~ 192 (1065)
||+..
T Consensus 114 ~f~~~ 118 (480)
T 1ud2_A 114 AVQAV 118 (480)
T ss_dssp EEEEE
T ss_pred cceee
Confidence 98764
|
| >3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-29 Score=299.43 Aligned_cols=114 Identities=8% Similarity=-0.001 Sum_probs=91.3
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~v~ 107 (1065)
++.||||+|...+.+ +.|+|+||++|||||| +||||+||++| +++.+. .+|||. +.
T Consensus 1 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~-~LGvt~I~L~P----------------i~~~~~~~~~GY~--~~ 57 (483)
T 3bh4_A 1 VNGTLMQYFEWYTPN----DGQHWKRLQNDAEHLS-DIGITAVWIPP----------------AYKGLSQSDNGYG--PY 57 (483)
T ss_dssp CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHH-HHTCCEEEECC----------------CSEESSTTSCSSS--EE
T ss_pred CCccEEEEEEeccCC----CCCCHHHHHHHHHHHH-hcCCCEEEcCc----------------cccCCCCCCCCcc--cc
Confidence 468999999998864 3499999999999999 99999555554 444221 468886 99
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
||++...|.++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ ..++|
T Consensus 58 dy~~~~~~~~~----~~id~~~Gt~~df~~lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------~~d~~ 110 (483)
T 3bh4_A 58 DLYDLGEFQQK----GTVRTKYGTKSELQDAIGSLHSRNVQVY--------GDV-------VLNHKA--------GADAT 110 (483)
T ss_dssp ETTCSSCSCCS----SCSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------CCSEE
T ss_pred ccccccccccc----CccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCccc--------Ccccc
Confidence 99988876222 369999999999999997 799999999 998 999985 12578
Q ss_pred ccccCC
Q psy15051 187 FLFQGR 192 (1065)
Q Consensus 187 ~~f~~~ 192 (1065)
+||+..
T Consensus 111 ~~f~~~ 116 (483)
T 3bh4_A 111 EDVTAV 116 (483)
T ss_dssp EEEEEE
T ss_pred cceeee
Confidence 888763
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=308.17 Aligned_cols=96 Identities=20% Similarity=0.372 Sum_probs=84.1
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCC--------CCCCCCcCCCCc----ccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGP--------NGDIGYDISNHT----EVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~--------~~~~GY~~~dy~----~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
+||+++|||||+||||+||||||++++ ..+|||++.||+ +++|+||+++|||+||++|
T Consensus 686 ~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~~~~Gt~~efk~lV~al---------- 755 (1039)
T 3klk_A 686 VRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQAL---------- 755 (1039)
T ss_dssp HHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCCCCCCCHHHHHHHHHHH----------
Confidence 499999999999999999999999986 357999999999 4789999999999999999
Q ss_pred ccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhh
Q psy15051 665 KQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWF 742 (1065)
Q Consensus 665 vv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf 742 (1065)
|++||+||||+|+||++ .+++||
T Consensus 756 -------------------------------------------------------H~~GI~VIlDvV~NHta~~~~~e~~ 780 (1039)
T 3klk_A 756 -------------------------------------------------------HKAGLQAIADWVPDQIYNLPGKEAV 780 (1039)
T ss_dssp -------------------------------------------------------HHTTCEEEEEECCSEECCCCEEEEE
T ss_pred -------------------------------------------------------HHCCCEEEEEEccCCcCCCCCCcce
Confidence 88888999999999995 778898
Q ss_pred Hhhhcc-CCCCCccee
Q psy15051 743 IKSAQK-IDPYTNYYV 757 (1065)
Q Consensus 743 ~~~~~~-~~~~~d~y~ 757 (1065)
..++.. ..++.+++.
T Consensus 781 ~~~~~~~~~~~~~~~~ 796 (1039)
T 3klk_A 781 TVTRSDDHGTTWEVSP 796 (1039)
T ss_dssp EEEEECTTCCBCTTCS
T ss_pred EEEEECCCCCcccccc
Confidence 876544 567777543
|
| >2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=308.96 Aligned_cols=200 Identities=17% Similarity=0.169 Sum_probs=148.9
Q ss_pred hhhhcccceEEEecccccCcCCCCc---ccccchhhh-----------hhhhHhhhCCCCcCCCCCCCCCcceeeecccC
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGI---GDLRGKNVR-----------KRYLELTLGLDPCGSSMNTDSNTIYISFWMNC 90 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~---Gdl~gi~~k-----------L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~ 90 (1065)
..||+++||||||||+|++++++|+ |+|+|++++ |+||| +||||+||++|
T Consensus 427 ~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk-~LGvtaI~L~P--------------- 490 (921)
T 2wan_A 427 PANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLK-ELGITTVQLQP--------------- 490 (921)
T ss_dssp CSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHH-HHTCCEEEESC---------------
T ss_pred CCCchhcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHH-HcCCCEEEeCC---------------
Confidence 3689999999999999998877765 777777664 99999 99999555555
Q ss_pred ccccccc--------cccCccceeecccccCCCccccccccccccccCc--HHHHHHHHH-HHhCCCEEEeccCCCcccc
Q psy15051 91 PILTTAV--------KTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--MKKFKHRID-AKNDSLHLIDSVLGVPTVD 159 (1065)
Q Consensus 91 p~~~~~~--------~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--~~df~~Li~-ah~~gi~vi~~~~~~~~~D 159 (1065)
++.++. .+|||. +.||+.+++- +.+|| +|+ ++|||+||+ ||++||+|| +|
T Consensus 491 -i~e~~~~de~~~~~~~wGYd--~~dy~ap~~~-------y~~dp-~Gt~~~~dfk~LV~~aH~~GI~VI--------LD 551 (921)
T 2wan_A 491 -VEEFNSIDETQPDTYNWGYD--PRNYNVPEGA-------YATTP-EGTARITELKQLIQSLHQQRIGVN--------MD 551 (921)
T ss_dssp -CEEESSSCTTSTTSCCCCCS--EEEEEEECGG-------GSSCS-STTHHHHHHHHHHHHHHHTTCEEE--------EE
T ss_pred -ccccCcccccccCcCCcCCC--CcCCCCCCcc-------cccCC-CCCccHHHHHHHHHHHHHcCCEEE--------EE
Confidence 444432 358885 9999988864 78999 999 899999997 699999999 77
Q ss_pred cccccccCCCCCccccccCcccccCcc-ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q psy15051 160 IESLFSTKPPSHSMCLTDSKHQCQGQN-FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGP 238 (1065)
Q Consensus 160 ~~~~~~~~v~nH~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1065)
+ |+||++ .+| .||++. +|
T Consensus 552 v-------V~NHt~----------~~~~~~f~~~---------------~p----------------------------- 570 (921)
T 2wan_A 552 V-------VYNHTF----------DVMVSDFDKI---------------VP----------------------------- 570 (921)
T ss_dssp E-------CTTCCS----------CSSSSHHHHH---------------ST-----------------------------
T ss_pred E-------cccccc----------ccccccccCC---------------CC-----------------------------
Confidence 7 777764 222 344331 00
Q ss_pred CCcccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy15051 239 SSEKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADI 318 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~ 318 (1065)
.+||.... . +. +..+. ...+|||++||+||
T Consensus 571 --~y~~~~~~-----~------g~-----------~~~~~-------------------g~~~dln~~~p~Vr------- 600 (921)
T 2wan_A 571 --QYYYRTDS-----N------GN-----------YTNGS-------------------GCGNEFATEHPMAQ------- 600 (921)
T ss_dssp --TTTBCBCT-----T------SC-----------BCCTT-------------------SSSCCBCTTSHHHH-------
T ss_pred --CeEEEcCC-----C------Cc-----------ccCCC-------------------CcccccccCCHHHH-------
Confidence 01111000 0 00 01111 35579999999997
Q ss_pred cCCCCCccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCC
Q psy15051 319 AWNPSCQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTID 397 (1065)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~ 397 (1065)
++|+++++||++ .||||||+|+++++.+
T Consensus 601 --------------------~~i~d~l~~Wl~e~gVDGfR~Da~~~~~~------------------------------- 629 (921)
T 2wan_A 601 --------------------KFVLDSVNYWVNEYHVDGFRFDLMALLGK------------------------------- 629 (921)
T ss_dssp --------------------HHHHHHHHHHHHHHCCCEEEETTGGGGCH-------------------------------
T ss_pred --------------------HHHHHHHHHHHHHcCCCEEEeccccccCH-------------------------------
Confidence 789999999996 7999999999998743
Q ss_pred chhHHHHHHHHHHHHHhh-CCccCCCCCCc
Q psy15051 398 QPETYEMLYKWRTLVEKF-GNQSADRQPSC 426 (1065)
Q Consensus 398 ~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~ 426 (1065)
++++++|+.+++. |+..+|||..-
T Consensus 630 -----~~~~~~~~~l~~~~p~~~ligE~w~ 654 (921)
T 2wan_A 630 -----DTMAKISNELHAINPGIVLYGEPWT 654 (921)
T ss_dssp -----HHHHHHHHHHHHHCTTCEEEECSSC
T ss_pred -----HHHHHHHHHHHHhCCceEEEEeccc
Confidence 6899999988875 99999999854
|
| >1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=297.36 Aligned_cols=269 Identities=11% Similarity=0.049 Sum_probs=169.9
Q ss_pred cccceEEEecccccCcCCCCcccc-cchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDL-RGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl-~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
++.||||+|...+.+.. .||| +||+++||||| +||||+||++|..++..... +...+ ..+|||
T Consensus 15 ~~~vi~q~F~w~~~~~~---gGd~~~gi~~~LdyLk-~LGvt~IwL~Pi~e~~~~~~------~~~~~-~~~~GY----- 78 (527)
T 1gcy_A 15 GDEIILQGFHWNVVREA---PNDWYNILRQQAATIA-ADGFSAIWMPVPWRDFSSWS------DGSKS-GGGEGY----- 78 (527)
T ss_dssp GCCCEEECCCTTHHHHS---TTTHHHHHHHHHHHHH-HTTCSEEEECCCSCCCCCBC---------CC-BCCSST-----
T ss_pred CCcEEEEEEEcCCCccc---CCcHHHHHHHHHHHHH-hcCCCEEEeCCccccccccc------cCCCC-CCCCCc-----
Confidence 57899999977654333 3999 99999999999 99999888888876543210 10122 267999
Q ss_pred cccccCCCccccccccccc--cccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 108 NHEQISRLPTRTVSSLNII--CKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~--~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
+ | ++|| |+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 79 ---~---~-------~~id~~p~~Gt~~dfk~Lv~~aH~~GI~Vi--------lD~-------V~NHt~----------- 119 (527)
T 1gcy_A 79 ---F---W-------HDFNKNGRYGSDAQLRQAASALGGAGVKVL--------YDV-------VPNHMN----------- 119 (527)
T ss_dssp ---T---C-------SSSCSCSSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC-----------
T ss_pred ---c---c-------ccCCCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eecCcC-----------
Confidence 3 5 6788 89999999999997 699999999 776 777765
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCC---CccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhcc
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLP---HVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQ 261 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1065)
..|+ |+ .++.++|..... ..+.+|.
T Consensus 120 -----------------------------~~~~~~~~~-----------------~~~~~~y~~~~~--~~~~~~~---- 147 (527)
T 1gcy_A 120 -----------------------------RGYPDKEIN-----------------LPAGQGFWRNDC--ADPGNYP---- 147 (527)
T ss_dssp -----------------------------TTCSSCSCC-----------------CCSSSSCBGGGS--CCCSSSC----
T ss_pred -----------------------------CCCCCcccc-----------------CCCcchhccccc--CCCCCcc----
Confidence 2222 22 011111211100 0001111
Q ss_pred ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHH
Q psy15051 262 RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLL 341 (1065)
Q Consensus 262 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1065)
++.+..+.|. ..|||||++||+|| ++|
T Consensus 148 -------~~~~~~~~f~-------------------~~~~dLn~~np~Vr---------------------------~~i 174 (527)
T 1gcy_A 148 -------NDCDDGDRFI-------------------GGDADLNTGHPQVY---------------------------GMF 174 (527)
T ss_dssp -------BTTBSSCCST-------------------TSTTBBCTTSHHHH---------------------------HHH
T ss_pred -------cCcccCcccc-------------------ccCCccccCCHHHH---------------------------HHH
Confidence 0011123453 58999999999997 889
Q ss_pred HHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccC
Q psy15051 342 LCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSA 420 (1065)
Q Consensus 342 ~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~ 420 (1065)
+++++||++ +||||||+|||++|.+ ++++++++.+. +| ..+
T Consensus 175 ~~~~~~w~~~~gvDGfRlDa~~~i~~------------------------------------~f~~~~~~~~~-~p-~~~ 216 (527)
T 1gcy_A 175 RDEFTNLRSQYGAGGFRFDFVRGYAP------------------------------------ERVNSWMTDSA-DN-SFC 216 (527)
T ss_dssp HHHHHHHHHHSCEEEEEESCGGGSCH------------------------------------HHHHHHHHHHC-TT-SEE
T ss_pred HHHHHHHHHhcCCCeEEEeccccCCH------------------------------------HHHHHHHHHhc-CC-ceE
Confidence 999999998 8999999999999965 57778877665 55 678
Q ss_pred CCCCCccccceeeecccCccccCCCC-----cccccCCCcccccccccchhhhHH--HHH-HHHhcCc------CCcccc
Q psy15051 421 DRQPSCADKFAIHSVYLNPVYAGSGN-----QNWRAGNQNRAESMEHRADLLHQV--VSH-FIYCGIV------DDTSAL 486 (1065)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~~e~~~~~~f~l~~~~--~~~-~Wq~~m~------~~~~~~ 486 (1065)
+||......+.. ...|.+.+. .+|.. ...+++|+|.+...+ .+. .|.-... .+....
T Consensus 217 vgE~~~~~~~~~-----~~~y~~~~~~~~~~~~~~~----~~~~~~fdf~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 287 (527)
T 1gcy_A 217 VGELWKGPSEYP-----NWDWRNTASWQQIIKDWSD----RAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287 (527)
T ss_dssp EECCCCCGGGSC-----TTSGGGGSCHHHHHHHHHH----HHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEE
T ss_pred EEEecCCCCccc-----ccccccccchhhHHHHHhh----ccCCceechHHHHHHHHHHHHhhhhhhcCCccccChhhce
Confidence 999866543310 011111100 01110 124678898765332 111 1211100 011223
Q ss_pred hhhcccCccccchhhhhh
Q psy15051 487 MVMNERRLSTIASRTMAA 504 (1065)
Q Consensus 487 ~~~~nhd~~r~~sr~~~~ 504 (1065)
.+..|||++|..+|.+++
T Consensus 288 ~f~~nHD~~r~~~~~~g~ 305 (527)
T 1gcy_A 288 TFVDNHDTGYSPGQNGGQ 305 (527)
T ss_dssp ECSCCTTTSBCSSGGGBC
T ss_pred EEEeCCCCCCcccccCcc
Confidence 456999999999998765
|
| >1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-29 Score=298.77 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=91.4
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~v~ 107 (1065)
++.||||+|...+.+ +.|+|+||++|||||| +||||+||++| +++.+. .+|||. +.
T Consensus 4 ~~~v~~q~F~W~~~~----~gG~~~gi~~~LdyLk-~LGvt~IwL~P----------------i~~~~~~~~~GY~--~~ 60 (515)
T 1hvx_A 4 FNGTMMQYFEWYLPD----DGTLWTKVANEANNLS-SLGITALWLPP----------------AYKGTSRSDVGYG--VY 60 (515)
T ss_dssp CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHH-HTTCCEEEECC----------------CSEESSTTCCSSS--EE
T ss_pred CCceEEEEEEccCCC----CCCcHHHHHHHHHHHH-hcCCCEEEeCC----------------cccCCCCCCCCcC--ee
Confidence 468999999988864 3499999999999999 99999555555 444321 467886 99
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCcc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQN 186 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~ 186 (1065)
||+++.+|.++ .+|||+|||++||++||+ ||++||+|| +|+ |+||++ ..++|
T Consensus 61 dy~~l~~f~~~----~~idp~~Gt~~dfk~Lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------~~d~~ 113 (515)
T 1hvx_A 61 DLYDLGEFNQK----GAVRTKYGTKAQYLQAIQAAHAAGMQVY--------ADV-------VFDHKG--------GADGT 113 (515)
T ss_dssp ETTCSSCSCBT----TBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------CCSEE
T ss_pred ccccccccccc----CccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ecCCcc--------CCCcc
Confidence 99998876332 359999999999999997 799999999 998 999984 12568
Q ss_pred ccccCC
Q psy15051 187 FLFQGR 192 (1065)
Q Consensus 187 ~~f~~~ 192 (1065)
+||+..
T Consensus 114 ~~f~~~ 119 (515)
T 1hvx_A 114 EWVDAV 119 (515)
T ss_dssp EEEEEE
T ss_pred cceeEE
Confidence 888753
|
| >2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=306.35 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=148.0
Q ss_pred hhhcccceEEEecccccCcCCCCc---ccccchhh-----------hhhhhHhhhCCCCcCCCCCCCCCcceeeecccCc
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGI---GDLRGKNV-----------RKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCP 91 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~---Gdl~gi~~-----------kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p 91 (1065)
.||+++||||||||+|++++++|+ |+|+|+++ +||||| +||||+||++|..++....- ..|
T Consensus 210 ~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk-~LGvtaI~L~Pi~~~~~~de----~~~ 284 (718)
T 2e8y_A 210 SHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVK-ELGVTHVELLPVNDFAGVDE----EKP 284 (718)
T ss_dssp SCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHH-HHTCSEEEESCCEEESSSCT----TSG
T ss_pred CChhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHH-HcCCCEEEECCccccCcccc----ccc
Confidence 458999999999999998877776 77777765 899999 99999555555444221000 000
Q ss_pred cccccccccCccceeecccccCCCccccccccccccccC--cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCC
Q psy15051 92 ILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYF--YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKP 168 (1065)
Q Consensus 92 ~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~G--t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v 168 (1065)
. ...+|||. +.||+.+++- +.++|.+| +++||++||+ ||++||+|| +|+ |
T Consensus 285 ~---~~~~wGYd--~~dy~a~~~~-------yg~~p~~g~~~~~dfk~LV~~aH~~GI~VI--------lDv-------V 337 (718)
T 2e8y_A 285 L---DAYNWGYN--PLHFFAPEGS-------YASNPHDPQTRKTELKQMINTLHQHGLRVI--------LDV-------V 337 (718)
T ss_dssp G---GCCCCCCS--EEEEEEECST-------TSSCSSSHHHHHHHHHHHHHHHHHTTCEEE--------EEE-------C
T ss_pred c---ccCcCCCC--ccCCCCcCcc-------cccCCCCccccHHHHHHHHHHHHHCCCEEE--------EEE-------e
Confidence 0 01248885 8888888864 56677666 6899999997 699999999 887 8
Q ss_pred CCCccccccCcccccCcc-ccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy15051 169 PSHSMCLTDSKHQCQGQN-FLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDI 247 (1065)
Q Consensus 169 ~nH~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1065)
+||++ .+| .||++. .| .|| |...
T Consensus 338 ~NHt~----------~~~~~~f~~~---------------~p-------~y~------------------------~~~~ 361 (718)
T 2e8y_A 338 FNHVY----------KRENSPFEKT---------------VP-------GYF------------------------FRHD 361 (718)
T ss_dssp TTCCS----------SGGGSHHHHH---------------ST-------TTS------------------------BCBC
T ss_pred ccccc----------Cccccccccc---------------CC-------CeE------------------------EecC
Confidence 88875 333 455441 00 011 1000
Q ss_pred ccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccc
Q psy15051 248 LERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTT 327 (1065)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~ 327 (1065)
.. +. + ...+ ..++|||++||+||
T Consensus 362 ~~-----------g~-~----------~n~~-------------------~~g~dln~~np~Vr---------------- 384 (718)
T 2e8y_A 362 EC-----------GK-P----------SNGT-------------------GVGNDIASERRMAR---------------- 384 (718)
T ss_dssp TT-----------SS-B----------CCTT-------------------SSSCCBCTTSHHHH----------------
T ss_pred CC-----------Cc-c----------cCCC-------------------CcccccccCCHHHH----------------
Confidence 00 00 0 0011 34689999999997
Q ss_pred cccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHH
Q psy15051 328 VVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLY 406 (1065)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 406 (1065)
++|+++++||++ +||||||+|+++++.+ ++++
T Consensus 385 -----------~~i~d~~~~Wl~e~gVDGfR~D~~~~~~~------------------------------------~~~~ 417 (718)
T 2e8y_A 385 -----------KFIADCVVYWLEEYNVDGFRFDLLGILDI------------------------------------DTVL 417 (718)
T ss_dssp -----------HHHHHHHHHHHHHHCCCEEEETTGGGSBH------------------------------------HHHH
T ss_pred -----------HHHHHHHHHHHHHhCCCEEEEeccccCCH------------------------------------HHHH
Confidence 889999999998 6999999999998854 6789
Q ss_pred HHHHHHHhh-CCccCCCCCCc
Q psy15051 407 KWRTLVEKF-GNQSADRQPSC 426 (1065)
Q Consensus 407 ~~r~~~d~~-~~~~~~~~~~~ 426 (1065)
++|+.+++. |+..+|||...
T Consensus 418 ~~~~~~~~~~p~~~ligE~w~ 438 (718)
T 2e8y_A 418 YMKEKATKAKPGILLFGEGWD 438 (718)
T ss_dssp HHHHHHHHHSTTCEEEECCCC
T ss_pred HHHHHHHHhCCCeEEEEeecC
Confidence 998888775 89999999743
|
| >2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=303.23 Aligned_cols=216 Identities=16% Similarity=0.224 Sum_probs=144.7
Q ss_pred hhhhcccceEEEecccccCcCCC----Ccccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNND----GIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK 98 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 98 (1065)
+.||+++||||||||+|++++++ +.|||+||++| |+||| +||||+||++|..++....- ..-.....
T Consensus 145 ~~~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~-~LGvt~i~L~Pi~~~~~~~~------~~~~g~~~ 217 (657)
T 2wsk_A 145 RTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLK-QLGITALELLPVAQFASEPR------LQRMGLSN 217 (657)
T ss_dssp CCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHH-HHTCCEEEESCCEEECCCHH------HHTTTCCC
T ss_pred CCCchhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccchHHHH-HcCCCEEEECCccccCcccc------cccccccc
Confidence 46899999999999999987765 58999999999 99999 99999555555444221000 00000013
Q ss_pred ccCccceeecccccCCCccccccccccccccC-----cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCc
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYF-----YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHS 172 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~G-----t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~ 172 (1065)
+|||. ++|| ++|+|+|| +++||++||+ +|++||+|| +|+ |+||+
T Consensus 218 ~wGY~--~~~y-------------~~~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~Vi--------lD~-------V~NH~ 267 (657)
T 2wsk_A 218 YWGYN--PVAM-------------FALHPAYACSPETALDEFRDAIKALHKAGIEVI--------LDI-------VLNHS 267 (657)
T ss_dssp SSCCC--EEEE-------------EEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEE--------EEE-------CCSCC
T ss_pred ccCcC--cccC-------------CCCCHHHcCCCCcCHHHHHHHHHHHHHCCCEEE--------EEE-------eeccc
Confidence 68983 4444 45555899 6899999998 699999999 665 55554
Q ss_pred cccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccC
Q psy15051 173 MCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTV 252 (1065)
Q Consensus 173 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1065)
+..++|+.. ..+.+.+ ..++||.+.
T Consensus 268 ----------------------------------------~~~~~~~~~---------~~~~~~~-~~~~y~~~~----- 292 (657)
T 2wsk_A 268 ----------------------------------------AELDLDGPL---------FSLRGID-NRSYYWIRE----- 292 (657)
T ss_dssp ----------------------------------------TTCSTTSBC---------CSHHHHH-HHHHBCBCT-----
T ss_pred ----------------------------------------ccccccCcc---------ccccCCC-CccceEECC-----
Confidence 444444310 0000000 011222110
Q ss_pred CcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccch
Q psy15051 253 SSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQ 332 (1065)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~ 332 (1065)
.+. ++.|. ..++|||++||+||
T Consensus 293 ----------------~~~--~~~~~-------------------~~~~~ln~~~p~v~--------------------- 314 (657)
T 2wsk_A 293 ----------------DGD--YHNWT-------------------GCGNTLNLSHPAVV--------------------- 314 (657)
T ss_dssp ----------------TSS--BCCSS-------------------SSSCCBCTTSHHHH---------------------
T ss_pred ----------------CCC--eeCCC-------------------CcCCcccCCCHHHH---------------------
Confidence 000 23344 57899999999997
Q ss_pred hhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHH
Q psy15051 333 MFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTL 411 (1065)
Q Consensus 333 ~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~ 411 (1065)
++|+++++||++ +||||||+|+|++|.++.++ ++.+++++++|+.
T Consensus 315 ------~~i~d~~~~W~~e~gvDGfR~D~~~~l~~~~~~----------------------------~~~~~~~~~i~~~ 360 (657)
T 2wsk_A 315 ------DYASACLRYWVETCHVDGFRFDLAAVMGRTPEF----------------------------RQDAPLFTAIQNC 360 (657)
T ss_dssp ------HHHHHHHHHHHHTTCCCEEEETTTHHHHBSSSB----------------------------CTTCHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHhCCcEEEEeccccccccccc----------------------------chhHHHHHHHHhC
Confidence 789999999998 79999999999999874211 1224788888762
Q ss_pred HHhhCCccCCCCCC
Q psy15051 412 VEKFGNQSADRQPS 425 (1065)
Q Consensus 412 ~d~~~~~~~~~~~~ 425 (1065)
...|+..+|+|..
T Consensus 361 -~~~~~~~liaE~w 373 (657)
T 2wsk_A 361 -PVLSQVKLIAEPW 373 (657)
T ss_dssp -TTGGGSEEEECCB
T ss_pred -cccCCcEEEEccc
Confidence 2247788888874
|
| >1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=299.01 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=84.1
Q ss_pred CchhhhcccceEEEecccccCcCCCC--------------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecc
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNNDG--------------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWM 88 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~g--------------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~ 88 (1065)
..+.||+++||||||||+|++++.++ .|||+|++++|+||| +||||+||++|..+....
T Consensus 76 ~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~l~-~lG~~~v~l~Pi~~~~~~------ 148 (637)
T 1gjw_A 76 KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVK-SLGADAIYLLPVSRMSDL------ 148 (637)
T ss_dssp CSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHH-HHTCCEEEECCCEEECCS------
T ss_pred CccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHHHHHH-HcCCCEEEeCCCeecccc------
Confidence 34679999999999999999776432 389999999999999 999997776665553221
Q ss_pred cCccccccccccCccceeecccccCCCccccccccccccccCc--------HHHHHHHHH-HHhCCCEEEeccCCCcccc
Q psy15051 89 NCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--------MKKFKHRID-AKNDSLHLIDSVLGVPTVD 159 (1065)
Q Consensus 89 ~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--------~~df~~Li~-ah~~gi~vi~~~~~~~~~D 159 (1065)
.....-+|||. +.||+.++ |+||| ++||++||+ +|++||+|| +|
T Consensus 149 ----~~~g~~~~gY~--~~~~~~~~-------------~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~Vi--------lD 201 (637)
T 1gjw_A 149 ----FKKGDAPSPYS--VKNPMELD-------------ERYHDPLLEPFKVDEEFKAFVEACHILGIRVI--------LD 201 (637)
T ss_dssp ----SCSSSSCCTTS--EEEEEEEC-------------GGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEE--------EE
T ss_pred ----cccCCCCCccC--CCCcCCcC-------------cccCCCcccccchHHHHHHHHHHHHHCCCEEE--------EE
Confidence 00011245773 55555555 47888 799999998 699999999 99
Q ss_pred cccccccCCCCCcc
Q psy15051 160 IESLFSTKPPSHSM 173 (1065)
Q Consensus 160 ~~~~~~~~v~nH~~ 173 (1065)
+ |+||++
T Consensus 202 ~-------V~nH~~ 208 (637)
T 1gjw_A 202 F-------IPRTAA 208 (637)
T ss_dssp E-------CTTEEE
T ss_pred E-------CcCCCc
Confidence 8 999986
|
| >2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-28 Score=298.11 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=78.6
Q ss_pred hhhhcccceEEEecccccCcCC----CCcccccchhhh--hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNN----DGIGDLRGKNVR--KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK 98 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~----~g~Gdl~gi~~k--L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 98 (1065)
..||+++||||||||+|+++++ .+.|||+||+++ |+||| +||||+||++|..++....- ..-.....
T Consensus 168 ~~~~~~~vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk-~LGvt~I~L~Pi~~~~~~~~------~~~~g~~~ 240 (718)
T 2vr5_A 168 KVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLK-DLGITTVELMPVFHFIDQRF------LTDKGLTN 240 (718)
T ss_dssp CCCTTSCCEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHH-HHTCCEEEECCCBCBCCCHH------HHTTTCCC
T ss_pred CCChhHCEEEEEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHH-HcCCCeEEEeCCEecCcccc------ccccCCcC
Confidence 3689999999999999998664 357999999999 99999 99999666666655332100 00000123
Q ss_pred ccCccceeecccccCCCccccccccccccccCc-------HHHHHHHHH-HHhCCCEEE
Q psy15051 99 TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY-------MKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 99 ~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt-------~~df~~Li~-ah~~gi~vi 149 (1065)
+||| ++.+| ++|+|+||| ++||++||+ ||++||+||
T Consensus 241 ~wGY--------~~~~y-------~~~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~Vi 284 (718)
T 2vr5_A 241 YWGY--------DPINF-------FSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVI 284 (718)
T ss_dssp SSCC--------CBSCS-------SSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEE
T ss_pred ccCc--------CcccC-------cccChhhcCCCCCCchHHHHHHHHHHHHHCCCEEE
Confidence 5899 66666 667779999 899999998 699999999
|
| >2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-28 Score=293.45 Aligned_cols=183 Identities=15% Similarity=0.246 Sum_probs=139.2
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCcccee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWIV 106 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~v 106 (1065)
|+++|||||||++|+. .|||+||+++|+||| +|||| ++|++ |++.++. ..|||
T Consensus 124 ~~~~viYei~~~~f~~-----~G~~~gi~~~L~yl~-~lGv~---------------~I~L~-Pi~~~~~~~~wGY---- 177 (602)
T 2bhu_A 124 LADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLK-ELGVT---------------AIQVM-PLAAFDGQRGWGY---- 177 (602)
T ss_dssp GGGCCEEEECHHHHSS-----SCSHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEECSSSCCCST----
T ss_pred cccceEEEEeeccccc-----CCCHHHHHHHHHHHH-HcCCC---------------EEEEC-ChhhccCCCCCCc----
Confidence 8999999999999983 599999999999999 99999 44444 5555544 35799
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||
T Consensus 178 ----~~~~y-------~~~~~~~Gt~~d~~~lv~~~H~~Gi~Vi--------lD~-------V~NH-------------- 217 (602)
T 2bhu_A 178 ----DGAAF-------YAPYAPYGRPEDLMALVDAAHRLGLGVF--------LDV-------VYNH-------------- 217 (602)
T ss_dssp ----TCCEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSC--------------
T ss_pred ----ccccC-------cccCcCCCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccc--------------
Confidence 55665 667779999999999997 699999999 555 5555
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCC
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYP 265 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1065)
+++.++|+. .. . ..||
T Consensus 218 --------------------------~~~~~~~~~----------~~-------~--------------------~~~~- 233 (602)
T 2bhu_A 218 --------------------------FGPSGNYLS----------SY-------A--------------------PSYF- 233 (602)
T ss_dssp --------------------------CCSSSCCHH----------HH-------C--------------------GGGE-
T ss_pred --------------------------cccCCcccc----------cc-------C--------------------cccc-
Confidence 444444441 00 0 0111
Q ss_pred CCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQ-YSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 266 ~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
.+. .. ..+++||+.||+|| ++|+++
T Consensus 234 --------~~~~~~-------------------~w~~~ln~~~~~v~---------------------------~~i~~~ 259 (602)
T 2bhu_A 234 --------TDRFSS-------------------AWGMGLDYAEPHMR---------------------------RYVTGN 259 (602)
T ss_dssp --------EEEEEC-------------------SSSEEECTTSHHHH---------------------------HHHHHH
T ss_pred --------cCCCCC-------------------CCCCCccCCCHHHH---------------------------HHHHHH
Confidence 110 11 34679999999997 889999
Q ss_pred HHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCCC
Q psy15051 345 LEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADRQ 423 (1065)
Q Consensus 345 l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~ 423 (1065)
++||++ +||||||+|+|++|.+.. ..+|++++++.+.+.++..+|||
T Consensus 260 ~~~W~~~~gvDGfR~D~~~~i~~~~--------------------------------~~~fl~~~~~~v~~~~~~~li~E 307 (602)
T 2bhu_A 260 ARMWLRDYHFDGLRLDATPYMTDDS--------------------------------ETHILTELAQEIHELGGTHLLLA 307 (602)
T ss_dssp HHHHHHHHCCSEEEETTGGGCCCCS--------------------------------SSCHHHHHHHHHHTTCSCCEEEE
T ss_pred HHHHHHHhCCCEEEEechHhhhccc--------------------------------hHHHHHHHHHHHhhcCCeEEEEE
Confidence 999995 799999999999997631 12689999888777788999999
Q ss_pred CCc
Q psy15051 424 PSC 426 (1065)
Q Consensus 424 ~~~ 426 (1065)
...
T Consensus 308 ~~~ 310 (602)
T 2bhu_A 308 EDH 310 (602)
T ss_dssp ECS
T ss_pred eCC
Confidence 753
|
| >1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=282.58 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=70.6
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc-----c
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK-----T 99 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~-----~ 99 (1065)
.|-.+.||+|+|.. +|+||++| ||||| +||||+||++|..+ ++.. .
T Consensus 6 ~~~~~~~i~~~F~w-----------~~~gi~~~~ldyL~-~LGv~~I~l~Pi~~----------------~~~~~~~~~~ 57 (471)
T 1jae_A 6 FASGRNSIVHLFEW-----------KWNDIADECERFLQ-PQGFGGVQISPPNE----------------YLVADGRPWW 57 (471)
T ss_dssp CCTTCEEEEEETTC-----------CHHHHHHHHHHTTT-TTTEEEEECCCCSC----------------BBCCTTCCGG
T ss_pred CCCCCCeEEEEecC-----------CHHHHHHHHHHHHH-HcCCCEEEeCcccc----------------ccCCCCCCcc
Confidence 45568999999874 48899999 69999 99999555555554 4332 2
Q ss_pred cCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 100 WSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 100 ~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
||| ++.+ ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 58 ~gY--------d~~d--------y~idp~~Gt~~d~~~lv~~~h~~Gi~Vi--------lD~-------V~NH~~ 101 (471)
T 1jae_A 58 ERY--------QPVS--------YIINTRSGDESAFTDMTRRCNDAGVRIY--------VDA-------VINHMT 101 (471)
T ss_dssp GGG--------SBCC--------SCSEETTEEHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred ccc--------cccc--------ccccCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc
Confidence 577 4444 367779999999999997 699999999 998 999987
|
| >3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=288.57 Aligned_cols=216 Identities=14% Similarity=0.210 Sum_probs=145.6
Q ss_pred cccceEEEecccccCcCCCCcccccchhh-hhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc-ccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNV-RKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA-VKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~-kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~gy~~~v 106 (1065)
+..+|||+|+++|+. .++.|+|+||++ +|+||| +||||+||++ |++..+ ..+|||
T Consensus 179 ~~~~IYE~hv~~~~~--~~~~Gt~~~l~~~~L~yLk-~LGvt~I~L~----------------Pi~e~~~~~~~GY---- 235 (755)
T 3aml_A 179 DAPRIYEAHVGMSGE--EPEVSTYREFADNVLPRIR-ANNYNTVQLM----------------AIMEHSYYASFGY---- 235 (755)
T ss_dssp SSCEEEEEESTTCSS--SSSCCCHHHHHHHTHHHHH-HTTCCEEEEE----------------SCEECSCGGGTTC----
T ss_pred CCCEEEEEeeecccc--CCCCCCHHHHHHHHHHHHH-HcCCCEEEEC----------------chhcCCCCCCCCC----
Confidence 578999999999974 456899999998 699999 9999944444 555443 357999
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 236 ----~~~dy-------~a~~~~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~-------V~NH~~------------ 277 (755)
T 3aml_A 236 ----HVTNF-------FAVSSRSGTPEDLKYLVDKAHSLGLRVL--------MDV-------VHSHAS------------ 277 (755)
T ss_dssp ----SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSCBC------------
T ss_pred ----ccCCC-------CccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc------------
Confidence 66666 667779999999999997 699999999 777 777765
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCC-CCCCCCcccccccccccCCcchhhhccccC
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIE-GEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
..+++.. ..++ +...+..+|..+. ..+.
T Consensus 278 ----------------------------~~~~~g~----------~~fd~~~~~~~~yf~~~~-------------~g~~ 306 (755)
T 3aml_A 278 ----------------------------NNVTDGL----------NGYDVGQNTHESYFHTGD-------------RGYH 306 (755)
T ss_dssp ----------------------------CCTTTSG----------GGGCSSCCGGGSSBCCGG-------------GGEE
T ss_pred ----------------------------cccccch----------hccccCCCCCcceeecCC-------------CCcc
Confidence 2211100 0000 0000001111000 0000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
..+ ..++||++||+|+ ++|+++
T Consensus 307 ----------~~w---------------------~~~~lN~~~p~V~---------------------------~~l~~~ 328 (755)
T 3aml_A 307 ----------KLW---------------------DSRLFNYANWEVL---------------------------RFLLSN 328 (755)
T ss_dssp ----------TTT---------------------TEECBCTTSHHHH---------------------------HHHHHH
T ss_pred ----------CCC---------------------CCceeccCCHHHH---------------------------HHHHHH
Confidence 001 2368999999997 789999
Q ss_pred HHHHHH-cCCCeeeecCccccccC-CCCCCCCCCCcCCCCCCCCCCCccccc-cCCchhHHHHHHHHHHHHHhh-CCccC
Q psy15051 345 LEFWLK-RGVDGFGMDSVLKLYEH-ESFANEPRLPEAAGRPDSDPTAYDHIY-TIDQPETYEMLYKWRTLVEKF-GNQSA 420 (1065)
Q Consensus 345 l~~Wl~-~GvDGfRlDav~~l~~~-~~~~d~p~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~r~~~d~~-~~~~~ 420 (1065)
++||++ +||||||+|+|++|++. .+++++.. + + +...+ .....++++||+++|+.+++. |+..+
T Consensus 329 l~~Wl~e~gvDGfR~Dav~~m~~~~~g~~~~f~-----~----~---~~~~~~~~~~~~ai~fl~~~~~~v~~~~p~~~l 396 (755)
T 3aml_A 329 LRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFT-----G----N---YKEYFSLDTDVDAIVYMMLANHLMHKLLPEATI 396 (755)
T ss_dssp HHHHHHHHCCCEEEETTHHHHHBTTTTTTCCCC-----S----C---GGGTSSTTBCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHcCCCEEEecchhhhhhcccCcccccc-----c----c---cccccccccchhHHHHHHHHHHHHHHHCCCeEE
Confidence 999998 69999999999998764 22221110 0 0 00001 112347889999999988875 99999
Q ss_pred CCCCCc
Q psy15051 421 DRQPSC 426 (1065)
Q Consensus 421 ~~~~~~ 426 (1065)
|||...
T Consensus 397 IaE~~~ 402 (755)
T 3aml_A 397 VAEDVS 402 (755)
T ss_dssp EECCSS
T ss_pred EEEccC
Confidence 999754
|
| >3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=280.14 Aligned_cols=211 Identities=15% Similarity=0.225 Sum_probs=143.9
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-cccCccce
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV-KTWSRRWI 105 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~-~~~gy~~~ 105 (1065)
++..+|||||+++|+++ |+|+||+++| +||| +||||+|| ++ |++.++. ..|||
T Consensus 243 ~~~~~IYE~h~~s~~~~-----G~~~~l~~~l~~yLk-~lG~t~I~---------------L~-Pi~e~~~~~~wGY--- 297 (722)
T 3k1d_A 243 NEAMSTYEVHLGSWRPG-----LSYRQLARELTDYIV-DQGFTHVE---------------LL-PVAEHPFAGSWGY--- 297 (722)
T ss_dssp GSCCEEEEECTTTSSTT-----CCHHHHHHHHHHHHH-HHTCSEEE---------------ES-CCEECSCGGGTTC---
T ss_pred CCCeEEEEEehhhccCC-----CCHHHHHHHHHHHHH-HcCCCeEE---------------EC-CcccCCCCCCCCC---
Confidence 45679999999999875 9999999998 9999 99999444 44 5555443 36899
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccC
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQG 184 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~ 184 (1065)
++.+| ++|+|+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 298 -----~~~~y-------~a~~~~yGt~~dfk~lV~~~H~~GI~Vi--------lD~-------V~NH~~----------- 339 (722)
T 3k1d_A 298 -----QVTSY-------YAPTSRFGTPDDFRALVDALHQAGIGVI--------VDW-------VPAHFP----------- 339 (722)
T ss_dssp -----SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CTTCCC-----------
T ss_pred -----CcccC-------cCccccCCCHHHHHHHHHHHHHcCCEEE--------EEE-------EeeccC-----------
Confidence 56665 667779999999999997 699999999 776 777753
Q ss_pred ccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccC
Q psy15051 185 QNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVY 264 (1065)
Q Consensus 185 ~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1065)
.. .|+ ...++|.. .|.... +...
T Consensus 340 -----------------------------~~-~~~----------~~~fdg~~----~y~~~d-----------~~~~-- 362 (722)
T 3k1d_A 340 -----------------------------KD-AWA----------LGRFDGTP----LYEHSD-----------PKRG-- 362 (722)
T ss_dssp -----------------------------CC-TTT----------TTTTTSSC----CSBCCC-----------CCSS--
T ss_pred -----------------------------Cc-cch----------hhcCCCCc----ccccCC-----------cccC--
Confidence 22 122 11111110 000000 0000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHH
Q psy15051 265 PPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCI 344 (1065)
Q Consensus 265 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1065)
..+.| ..++||+.||+|| ++|+++
T Consensus 363 --------------------------~~~~W---g~~~ln~~~p~Vr---------------------------~~l~~~ 386 (722)
T 3k1d_A 363 --------------------------EQLDW---GTYVFDFGRPEVR---------------------------NFLVAN 386 (722)
T ss_dssp --------------------------STTCC---CCCCBCTTSHHHH---------------------------HHHHHH
T ss_pred --------------------------ccCCC---CCeeecCCCHHHH---------------------------HHHHHH
Confidence 00111 2357999999997 789999
Q ss_pred HHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCC
Q psy15051 345 LEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADR 422 (1065)
Q Consensus 345 l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~ 422 (1065)
++||+++ ||||||+|+|++|....-.+. + |....+... .....++++|++++++.+.+. |+..+|+
T Consensus 387 ~~~Wl~~~gvDGfR~Dav~~mly~d~~r~-~------g~w~~n~~g-----g~~n~~~~~fl~~l~~~v~~~~P~~~~ia 454 (722)
T 3k1d_A 387 ALYWLQEFHIDGLRVDAVASMLYLDYSRP-E------GGWTPNVHG-----GRENLEAVQFLQEMNATAHKVAPGIVTIA 454 (722)
T ss_dssp HHHHHHHSCCCEEEECCTHHHHBCCCCCC-S------SCCSCCCSS-----CSBCHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred HHHHHHHhCCCEEEEcchhhhhhcccccc-c------cccccccCC-----CccChHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 9999985 999999999999975321111 0 111111111 234458999999999977764 9999999
Q ss_pred CCCc
Q psy15051 423 QPSC 426 (1065)
Q Consensus 423 ~~~~ 426 (1065)
|.+.
T Consensus 455 E~~t 458 (722)
T 3k1d_A 455 EEST 458 (722)
T ss_dssp CCCS
T ss_pred EecC
Confidence 9643
|
| >3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=281.92 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=70.6
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
|++++|||+++++|++. |||+||+++|+||| +||||.||++|..+... ..+|||
T Consensus 134 ~~~~~iYe~~v~~f~~~-----G~~~~~~~~L~yl~-~lGv~~v~l~Pi~~~~~---------------~~~~GY----- 187 (618)
T 3m07_A 134 WEQAVVYEMHTGTFTPE-----GTFRAAIAKLPYLA-ELGVTVIEVMPVAQFGG---------------ERGWGY----- 187 (618)
T ss_dssp GGGCCEEEECHHHHSSS-----CSHHHHHTTHHHHH-HHTCCEEEECCCEECSS---------------SCCCST-----
T ss_pred hhhCeEEEEehhhcCCC-----CCHHHHHHHHHHHH-HcCCCEEEeCChhccCC---------------CCCCCc-----
Confidence 78999999999999763 89999999999999 99999555555433211 246898
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
++.+| ++|+|+|||++||++||+ ||++||+||
T Consensus 188 ---~~~~~-------~~~~~~~G~~~~~~~lv~~~H~~Gi~Vi 220 (618)
T 3m07_A 188 ---DGVLL-------YAPHSAYGTPDDFKAFIDAAHGYGLSVV 220 (618)
T ss_dssp ---TCCEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred ---Ccccc-------cccCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 45555 566779999999999997 699999999
|
| >1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-26 Score=269.34 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=66.0
Q ss_pred cceEEEecccccCcCCCCcccccchhhh-hhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccccc---ccCcccee
Q psy15051 31 TVIYQILVPSFKDSNNDGIGDLRGKNVR-KRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVK---TWSRRWIV 106 (1065)
Q Consensus 31 ~viYqi~~~~F~d~~~~g~Gdl~gi~~k-L~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~---~~gy~~~v 106 (1065)
.||.|.|- ++|+||++| ||||| +||||+||++ |++.++.. .|||
T Consensus 3 ~~~~q~F~-----------w~~~gi~~~lldyL~-~LGv~~I~l~----------------Pi~~~~~~~~~~~gY---- 50 (448)
T 1g94_A 3 TTFVHLFE-----------WNWQDVAQECEQYLG-PKGYAAVQVS----------------PPNEHITGSQWWTRY---- 50 (448)
T ss_dssp CCEEEETT-----------CCHHHHHHHHHHTHH-HHTCCEEEEC----------------CCSCBBCSSSGGGGG----
T ss_pred CEEEEEec-----------CcHHHHHHHHHHHHH-HcCCCEEEEC----------------CccccCCCCCCcccc----
Confidence 56777743 779999999 59999 9999955544 44444432 2577
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+ ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 51 ----~~~~--------y~idp~~Gt~~dfk~Lv~~aH~~Gi~Vi--------lD~-------V~NH~~ 91 (448)
T 1g94_A 51 ----QPVS--------YELQSRGGNRAQFIDMVNRCSAAGVDIY--------VDT-------LINHMA 91 (448)
T ss_dssp ----SBSC--------SCSCBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------ECSEEC
T ss_pred ----cccc--------cccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eecccc
Confidence 4444 478889999999999997 799999999 998 999986
|
| >1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=279.64 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=85.2
Q ss_pred hhhcccceEEEecccccCcCCC----CcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccC
Q psy15051 26 EWWKNTVIYQILVPSFKDSNND----GIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWS 101 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~g 101 (1065)
.||++++|||||||+|++++++ ..|+|+||+++|+||| +||||+||++|..++.... -+..........+||
T Consensus 174 ~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l~yLk-~LGvt~V~L~Pi~~~~~~~---~~~~~~~~g~~~~wG 249 (750)
T 1bf2_A 174 RAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLA-SLGVTAVEFLPVQETQNDA---NDVVPNSDANQNYWG 249 (750)
T ss_dssp CCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHH-HHTCCEEEESCCBCBSCTT---TTSSTTCCTTCCCSC
T ss_pred CCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHHHHHH-HcCCCEEEECCcccCcccc---ccccccccccccccC
Confidence 5799999999999999986653 4699999999999999 9999977777776643210 000000001124689
Q ss_pred ccceeecccccCCCccccccccccccccCc-------HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 102 RRWIVVNHEQISRLPTRTVSSLNIICKYFY-------MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 102 y~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt-------~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
| ++.+| ++|+|+||| ++||++||+ +|++||+|| +|+ |+||++
T Consensus 250 Y--------~~~dy-------~~~~~~yGt~~~~~~~~~efk~lV~~~H~~Gi~Vi--------lDv-------V~NH~~ 299 (750)
T 1bf2_A 250 Y--------MTENY-------FSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY--------MDV-------VYNHTA 299 (750)
T ss_dssp C--------CBSCS-------SCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE--------EEE-------CCSSCT
T ss_pred c--------Ccccc-------cccCccccCCCCCccHHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc
Confidence 9 56666 667779999 999999998 699999999 776 677654
|
| >3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=272.67 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=72.0
Q ss_pred hhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccce
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWI 105 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~ 105 (1065)
..|++++|||+|+++|+.. |+|+||+++|+||| +||||+||++|..+.. ...+|||
T Consensus 97 ~~~~~~~iYe~~~~~f~~~-----G~~~~~~~~l~~l~-~lG~~~v~l~Pi~~~~---------------~~~~~GY--- 152 (558)
T 3vgf_A 97 LKKEDLIIYEIHVGTFTPE-----GTFEGVIRKLDYLK-DLGITAIEIMPIAQFP---------------GKRDWGY--- 152 (558)
T ss_dssp CCGGGCCEEEECHHHHSSS-----CSHHHHHHTHHHHH-HHTCCEEEECCCEECS---------------SSCCCST---
T ss_pred CCccccEEEEEeHHHhCCC-----CCHHHHHHHHHHHH-HcCCcEEEECCcccCC---------------CCCCcCc---
Confidence 4589999999999999863 89999999999999 9999955555543321 1246898
Q ss_pred eecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 106 VVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 106 v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
++.+| ++|+|+|||++||++||+ ||++||+||
T Consensus 153 -----~~~~~-------~~~~~~~Gt~~d~~~lv~~~h~~Gi~Vi 185 (558)
T 3vgf_A 153 -----DGVYL-------YAVQNSYGGPEGFRKLVDEAHKKGLGVI 185 (558)
T ss_dssp -----TCCEE-------EEECGGGTHHHHHHHHHHHHHHTTCEEE
T ss_pred -----ccccc-------cccccccCCHHHHHHHHHHHHHcCCEEE
Confidence 55555 677779999999999998 699999999
|
| >1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=261.06 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=69.1
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
++.||||+|++ +|+||+++|+||| +||||+||++|..+.... . . ..-.....+||| ++.|
T Consensus 4 ~~~~~~q~f~~-----------~~~~i~~~l~yl~-~lG~~~i~l~Pi~~~~~~--~---~-~~~~~~~~~~gY--~~~~ 63 (422)
T 1ua7_A 4 KSGTILHAWNW-----------SFNTLKHNMKDIH-DAGYTAIQTSPINQVKEG--N---Q-GDKSMSNWYWLY--QPTS 63 (422)
T ss_dssp TTSCEEECTTB-----------CHHHHHHTHHHHH-HTTCSEEEECCCEEECCT--G---G-GCCBGGGGGGGG--CEEE
T ss_pred cCcEEEEEecC-----------CHHHHHHHHHHHH-HcCCCEEEeCCccccccC--C---c-CcCccCCccccc--ccee
Confidence 47899999986 6789999999999 999997777775442110 0 0 000001125677 2555
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|+ .+||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 y~-------------~~~~~~G~~~d~~~lv~~~h~~Gi~Vi--------lD~-------V~NH~~ 101 (422)
T 1ua7_A 64 YQ-------------IGNRYLGTEQEFKEMCAAAEEYGIKVI--------VDA-------VINHTT 101 (422)
T ss_dssp EE-------------EEETTTEEHHHHHHHHHHHHTTTCEEE--------EEE-------CCSBCC
T ss_pred ee-------------ccCCCCCCHHHHHHHHHHHHHCCCEEE--------EEe-------ccCccc
Confidence 54 45558999999999997 699999999 777 777764
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=249.89 Aligned_cols=97 Identities=27% Similarity=0.550 Sum_probs=89.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
|++++|+|||+|||++|||+||+++. ..+|||++.||++|||+|||++||++||++|
T Consensus 16 ~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~a---------------------- 73 (704)
T 3hje_A 16 EIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEA---------------------- 73 (704)
T ss_dssp HHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHH----------------------
Confidence 99999999999999999999999984 4579999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCC--CchhhHhhhcc--CCCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSN--KHDWFIKSAQK--IDPY 752 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~--~~~wf~~~~~~--~~~~ 752 (1065)
|++||+||+|+|+||++. +|+||.+.... .++|
T Consensus 74 -------------------------------------------H~~GI~VilDvV~NH~s~~~~~~wf~d~l~~g~~s~Y 110 (704)
T 3hje_A 74 -------------------------------------------KSKGLGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRY 110 (704)
T ss_dssp -------------------------------------------HHHTCEEEEEECCSEEECSTTCHHHHHHHHHGGGSGG
T ss_pred -------------------------------------------HHCCCEEEEeecccccccccchHHHHHHHhcCCCCCC
Confidence 899999999999999986 89999987642 7889
Q ss_pred Ccceeec
Q psy15051 753 TNYYVWK 759 (1065)
Q Consensus 753 ~d~y~~~ 759 (1065)
.+||.|.
T Consensus 111 ~d~F~W~ 117 (704)
T 3hje_A 111 YNYFDFY 117 (704)
T ss_dssp GGGBCBC
T ss_pred Ccccccc
Confidence 9999985
|
| >3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=263.03 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=82.4
Q ss_pred hhhcccceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-ccc
Q psy15051 26 EWWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVK 98 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~ 98 (1065)
.||+++||||+|||+|....+ ++.|+|+||+++|+||| +||||+||++|..+...+.-..-...+.+.+ ...
T Consensus 263 ~~~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L~yLk-~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~~ 341 (877)
T 3faw_A 263 KGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQ-KLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNN 341 (877)
T ss_dssp CSGGGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGHHHHH-HHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCS
T ss_pred CCccccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHHHHHH-HcCCCEEEEcchhcccccccccccccccccCCCCC
Confidence 478999999999999986322 23599999999999999 9999988888887632210000000001111 112
Q ss_pred -ccCccceeecccccCCCccccccccccccccCc--------HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCC
Q psy15051 99 -TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--------MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKP 168 (1065)
Q Consensus 99 -~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--------~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v 168 (1065)
.||| ++.+| ++++++||+ ++||++||+ +|++||+|| +|| |
T Consensus 342 ynwGY--------~~~~~-------~a~~~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VI--------LDv-------V 391 (877)
T 3faw_A 342 YNWGY--------DPQSY-------FALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVI--------LDV-------V 391 (877)
T ss_dssp CCCSC--------SBSCS-------SSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEE--------EEE-------C
T ss_pred CccCc--------CcCcc-------ccccccccCCCCCcchHHHHHHHHHHHHHHcCCEEE--------EEE-------e
Confidence 3888 44444 456667888 799999998 699999999 777 7
Q ss_pred CCCcc
Q psy15051 169 PSHSM 173 (1065)
Q Consensus 169 ~nH~~ 173 (1065)
+||++
T Consensus 392 ~NH~a 396 (877)
T 3faw_A 392 YNHTA 396 (877)
T ss_dssp TTCCS
T ss_pred ecccc
Confidence 77764
|
| >2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=267.43 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=44.8
Q ss_pred hccc---ceEEEecccccCcCCCCc----ccccchhh-------hhhhhHhhhCCCCcCCCCCCCC
Q psy15051 28 WKNT---VIYQILVPSFKDSNNDGI----GDLRGKNV-------RKRYLELTLGLDPCGSSMNTDS 79 (1065)
Q Consensus 28 ~~~~---viYqi~~~~F~d~~~~g~----Gdl~gi~~-------kL~yl~~~LGv~~~~~~p~~~~ 79 (1065)
|+++ ||||+|+|+|++++++++ |+|+|+++ +|+||+ +||||+||++|..+.
T Consensus 418 ~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~~L~-~lGvt~i~LlPv~~~ 482 (1083)
T 2fhf_A 418 KADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLS-ASGVTHIELLPVFDL 482 (1083)
T ss_dssp HHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHH-HHTCCEEEESCCEEE
T ss_pred cccccccEEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHHHHHH-hcCCCEEEECCcccc
Confidence 4556 999999999999888876 99999987 599999 999999999998864
|
| >2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=261.73 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=80.8
Q ss_pred hhcccceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCccee-eecccCccccc-ccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYI-SFWMNCPILTT-AVK 98 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~-~~~~~~p~~~~-~~~ 98 (1065)
+|+++||||||+|+|+.... .+.|||+||+++|+||| +||||+||++|+.+...+-- ..--....+.+ ...
T Consensus 148 ~~~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L~yLk-~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~ 226 (714)
T 2ya0_A 148 TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLK-DLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN 226 (714)
T ss_dssp SGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHH-HHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCS
T ss_pred CccccEEEEEEehhhccCCCCccccccCCcCHHHHHHHhHHHH-HcCCCEEEECCcccccccCcccccccccccccCcCc
Confidence 58899999999999985321 23599999999999999 99999888888776321000 00000000111 112
Q ss_pred -ccCccceeecccccCCCccccccccccccccCc--------HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCC
Q psy15051 99 -TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--------MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKP 168 (1065)
Q Consensus 99 -~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--------~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v 168 (1065)
.|||. +.||+.++ ++||+ ++|||+||+ +|++||+|| +|| |
T Consensus 227 ~~wGY~--~~~~~a~~-------------~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~Vi--------lDv-------V 276 (714)
T 2ya0_A 227 YNWGYD--PQNYFSLT-------------GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI--------LDV-------V 276 (714)
T ss_dssp CCCSCS--BSCSSSBC-------------STTSSCTTSTTHHHHHHHHHHHHHHHTTCEEE--------EEE-------C
T ss_pred CccCCC--CccCcccC-------------hhhccCCCCccchHHHHHHHHHHHHHCCCEEE--------EEe-------c
Confidence 38883 55555554 46776 899999998 699999999 888 8
Q ss_pred CCCcc
Q psy15051 169 PSHSM 173 (1065)
Q Consensus 169 ~nH~~ 173 (1065)
+||++
T Consensus 277 ~NH~~ 281 (714)
T 2ya0_A 277 YNHTA 281 (714)
T ss_dssp TTBCS
T ss_pred cCccc
Confidence 88875
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-23 Score=246.08 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=74.0
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
+.||-|.|--+ ++.|.+++ +||+ +||||+||++|+.++... .-.....++||
T Consensus 10 ~~~i~~~f~W~-----------w~~ia~e~~~yl~-~~G~~~v~~~P~~e~~~~---------~~~~~~~~~~Y------ 62 (496)
T 4gqr_A 10 RTSIVHLFEWR-----------WVDIALECERYLA-PKGFGGVQVSPPNENVAI---------YNPFRPWWERY------ 62 (496)
T ss_dssp CCEEEEETTCC-----------HHHHHHHHHHTTT-TTTCCEEEECCCSCBBCC---------TTTTSCGGGGG------
T ss_pred CcEEEEecCCC-----------HHHHHHHHHHHHH-HhCCCEEEeCccccCccC---------CCCCCCccccc------
Confidence 45777776543 66888886 8999 999998888888775321 00001113466
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
+..+ ++|+|+|||++||++||+ ||++||+|| +|+ |+||++ .+|+
T Consensus 63 --~~~d--------y~i~~~~Gt~~df~~lv~~aH~~Gi~Vi--------lD~-------V~NH~~----------~~~~ 107 (496)
T 4gqr_A 63 --QPVS--------YKLCTRSGNEDEFRNMVTRCNNVGVRIY--------VDA-------VINHMC----------GNAV 107 (496)
T ss_dssp --SBSC--------SCSCBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE----------ETTS
T ss_pred --CccC--------ceeCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCcCC----------Cccc
Confidence 5555 368889999999999997 799999999 998 999976 5667
Q ss_pred cccCC
Q psy15051 188 LFQGR 192 (1065)
Q Consensus 188 ~f~~~ 192 (1065)
||...
T Consensus 108 ~~~~~ 112 (496)
T 4gqr_A 108 SAGTS 112 (496)
T ss_dssp CSBSC
T ss_pred ccccc
Confidence 77653
|
| >2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-23 Score=260.43 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=80.3
Q ss_pred hhcccceEEEecccccCcCC------CCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCccee-eecccCccccc-ccc
Q psy15051 27 WWKNTVIYQILVPSFKDSNN------DGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYI-SFWMNCPILTT-AVK 98 (1065)
Q Consensus 27 w~~~~viYqi~~~~F~d~~~------~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~-~~~~~~p~~~~-~~~ 98 (1065)
.|+++||||||+|+|+.... .+.|||+||+++|+||| +||||+||++|+.+...+-- ..--..+.+.+ ...
T Consensus 455 ~~~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~LdyLk-~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ 533 (1014)
T 2ya1_A 455 TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLK-DLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN 533 (1014)
T ss_dssp SGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHH-HHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCS
T ss_pred CccccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHhHHHH-HcCCCeEEecCcccccccccccccccccccccCcCC
Confidence 47899999999999985321 23599999999999999 99999888888776321000 00000000111 112
Q ss_pred -ccCccceeecccccCCCccccccccccccccCc--------HHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCC
Q psy15051 99 -TWSRRWIVVNHEQISRLPTRTVSSLNIICKYFY--------MKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKP 168 (1065)
Q Consensus 99 -~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt--------~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v 168 (1065)
.|||. +.||+.+ +++||+ ++|||+||+ +|++||+|| +|+ |
T Consensus 534 ynwGY~--~~~y~a~-------------~~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VI--------lDv-------V 583 (1014)
T 2ya1_A 534 YNWGYD--PQNYFSL-------------TGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI--------LDV-------V 583 (1014)
T ss_dssp CCCSCS--BSCSSSB-------------CSTTCSCTTCTTHHHHHHHHHHHHHHTTTCEEE--------EEE-------C
T ss_pred cccCCC--cCcCccc-------------cccccCCCccccchHHHHHHHHHHHHHcCCEEE--------EEE-------e
Confidence 38883 5555444 446776 799999998 699999999 887 8
Q ss_pred CCCcc
Q psy15051 169 PSHSM 173 (1065)
Q Consensus 169 ~nH~~ 173 (1065)
+||++
T Consensus 584 ~NHt~ 588 (1014)
T 2ya1_A 584 YNHTA 588 (1014)
T ss_dssp TTCCS
T ss_pred ccccc
Confidence 88875
|
| >1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=245.76 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=79.0
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCc
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNY 965 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~ 965 (1065)
..++.||+||+|-||||+|.+..+- -||+ ||+|++|......- .. +...+
T Consensus 570 q~ll~lt~PGvPd~YqG~E~~~~sl-------vDPD----------------NRRpvd~~~r~~~l-~~----~~~~~-- 619 (720)
T 1iv8_A 570 LVALKIMSAGIPDFYQGTEIWRYLL-------TDPD----------------NRVPVDFKKLHEIL-EK----SXKFE-- 619 (720)
T ss_dssp HHHHHHHSSSEEEEETTTTSCCCCC-------STTG----------------GGCCCCHHHHHHHH-HT----CSSCC--
T ss_pred HHHHHhCCCCCCccccCcCcccccC-------CCCC----------------CCCCCChHHHHHHH-HH----hhccc--
Confidence 3578899999999999999988875 3776 89999986421000 00 00000
Q ss_pred ccccHHHhhcCCCcHHHHHHHHHHHHHhcccc-cCCCeEEEccCCcEEEEEEEcCCcEEEEEEECCCC
Q psy15051 966 WTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV-RMGDYKISTPNNYVFILTRTEGSTSVYLIINLNSR 1032 (1065)
Q Consensus 966 ~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL-~~G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~ 1032 (1065)
............-+.++++++++|+++|+| ..|++..+...++++||.|. ++.+|||+..-..
T Consensus 620 --~~l~~~~~~g~~K~~~~~~~l~~R~~~p~lf~~g~y~pl~~~~~~~af~R~--~~~~~~~~~r~~~ 683 (720)
T 1iv8_A 620 --KNMLESMDDGRIKMYLTYXLLSLRKQLAEDFLKGEYKGLDLEEGLCGFIRF--NKILVIIKTKGSV 683 (720)
T ss_dssp --THHHHCGGGSHHHHHHHHHHHHHHHHTHHHHHHSCEEEECCCTTEEEEEET--TTEEEEEESCTTC
T ss_pred --hhhhcccccchHHHHHHHHHHHHHhhchhhhccCCeeeeeccCcEEEEEEc--CCEEEEEEecccc
Confidence 000011111222357899999999999998 89999999988999999998 5678888886554
|
| >4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-21 Score=247.16 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=72.9
Q ss_pred hhhcccceEEEecccccCcCCC----Ccccccch-------hhhhhhhHhhhCCCCcCCCCCCCCCcceee--e--ccc-
Q psy15051 26 EWWKNTVIYQILVPSFKDSNND----GIGDLRGK-------NVRKRYLELTLGLDPCGSSMNTDSNTIYIS--F--WMN- 89 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~----g~Gdl~gi-------~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~--~--~~~- 89 (1065)
..|+++||||+|+|+|+..+++ ..|+++|+ ++||+||| +||||+||++|..++....-. - ...
T Consensus 248 ~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk-~LGVtaveLmPv~e~~~~~~~~~~~~~~d~ 326 (884)
T 4aio_A 248 DSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLS-DAGLTHVHLLPSFHFAGVDDIKSNWKFVDE 326 (884)
T ss_dssp SCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHH-HHTCCEEEECCCEEESSSCSCGGGCCCCCH
T ss_pred CCcccCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHhHHHH-HcCCCEEEeccccccCcccccccccccccc
Confidence 4578999999999999865544 45888876 67899999 999997777776653221000 0 000
Q ss_pred ---Cccc--------------cccccccCccceeecccccCCCccccccccccccccCcHH-------HHHHHHH-HHhC
Q psy15051 90 ---CPIL--------------TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMK-------KFKHRID-AKND 144 (1065)
Q Consensus 90 ---~p~~--------------~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~-------df~~Li~-ah~~ 144 (1065)
.|.+ ......|||. ++||+.++ ++|||++ +||+||+ ||++
T Consensus 327 ~~l~~~~~~~~~~~~l~~~~~~~~~~~WGYd--~~~y~a~~-------------~~ygt~~d~~~~~~efk~LV~~aH~~ 391 (884)
T 4aio_A 327 CELATFPPGSDMQQAAVVAIQEEDPYNWGYN--PVLWGVPK-------------GSYASDPDGPSRIIEYRQMVQALNRI 391 (884)
T ss_dssp HHHTTSCTTCSHHHHHHHHHTTTSSCCCCCC--EEEEEEEC-------------GGGSSCSSTTHHHHHHHHHHHHHHHT
T ss_pred ccccccCCchHHHHhhhhhhhhccccccCcC--cccccCCC-------------cccccCccccchHHHHHHHHHHHHhc
Confidence 0000 0113468883 55555554 5788854 5999997 6999
Q ss_pred CCEEE
Q psy15051 145 SLHLI 149 (1065)
Q Consensus 145 gi~vi 149 (1065)
||+||
T Consensus 392 GIkVI 396 (884)
T 4aio_A 392 GLRVV 396 (884)
T ss_dssp TCEEE
T ss_pred CCcee
Confidence 99999
|
| >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-21 Score=234.03 Aligned_cols=88 Identities=24% Similarity=0.309 Sum_probs=70.0
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK 128 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~ 128 (1065)
|+|+|++++|+||+ +|||+. +|++ |++.+ +..+|||. +.|| ++|||+
T Consensus 12 Gtf~~i~~~LdyL~-~LGvt~---------------V~Ls-Pi~e~~~~s~~GYd--~~Dy-------------~~vdp~ 59 (704)
T 3hje_A 12 MKFSEIRNRLDYFV-ELGVTH---------------LYLS-PVLKARPGSTHGYD--VVDY-------------NTINDE 59 (704)
T ss_dssp CCHHHHHTTHHHHH-HHTCSE---------------EEEC-CCEEESTTCSSSCS--EEEE-------------EEECGG
T ss_pred CCHHHHHHHHHHHH-HCCCCE---------------EEEC-CCccCCCCCCCCCC--CcCC-------------CCcCcc
Confidence 89999999999999 999994 4444 55554 34678993 4444 455668
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCC
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGR 192 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~ 192 (1065)
|||++||++||+ +|++||+|| +|+ |+||++ ..++|+||++.
T Consensus 60 lGt~edfk~LV~~aH~~GI~Vi--------lDv-------V~NH~s--------~~~~~~wf~d~ 101 (704)
T 3hje_A 60 LGGEEEYIRLIDEAKSKGLGII--------QDI-------VPNHMA--------VHHTNWRLMDV 101 (704)
T ss_dssp GTHHHHHHHHHHHHHHHTCEEE--------EEE-------CCSEEE--------CSTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEE--------Eee-------cccccc--------cccchHHHHHH
Confidence 999999999998 699999999 998 999975 12368899754
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=213.26 Aligned_cols=94 Identities=17% Similarity=0.321 Sum_probs=84.9
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCC--------CCCCcCCCCcc----cCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNG--------DIGYDISNHTE----VGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~--------~~GY~~~dy~~----idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
+|+++|||||+||||+|||+||++++.. ++||++.||+. |+|+|||++|||+||++|
T Consensus 854 ~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~~yGt~edfk~LV~al----------- 922 (1108)
T 3ttq_A 854 VIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQAL----------- 922 (1108)
T ss_dssp HHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCCSSCCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCCCCCCHHHHHHHHHHH-----------
Confidence 9999999999999999999999999765 79999999988 799999999999999999
Q ss_pred cccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCC--CCchhhH
Q psy15051 666 QTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS--NKHDWFI 743 (1065)
Q Consensus 666 v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts--~~~~wf~ 743 (1065)
|++||+||||+|+||++ .+|+||.
T Consensus 923 ------------------------------------------------------H~~GI~VIlDvV~NHta~~de~e~f~ 948 (1108)
T 3ttq_A 923 ------------------------------------------------------HHANMQVMADVVDNQVYNLPGKEVVS 948 (1108)
T ss_dssp ------------------------------------------------------HHTTCEEEEEECCSEECCCCEEEEEE
T ss_pred ------------------------------------------------------HHCCCEEEEEeccccccCCCCcceeE
Confidence 88999999999999996 7799998
Q ss_pred hhhcc-CCCCCcce
Q psy15051 744 KSAQK-IDPYTNYY 756 (1065)
Q Consensus 744 ~~~~~-~~~~~d~y 756 (1065)
.++.. ..++.++|
T Consensus 949 ~~r~~~~~~~~~~~ 962 (1108)
T 3ttq_A 949 ATRAGVYGNDDATG 962 (1108)
T ss_dssp EEEECTTSCBCCCT
T ss_pred EEEeCCCCCccccc
Confidence 87755 66777743
|
| >3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-18 Score=210.94 Aligned_cols=123 Identities=9% Similarity=0.029 Sum_probs=88.7
Q ss_pred hhhhcccceEEEecccccCcCCCCcccc-cchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGIGDL-RGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~Gdl-~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
+.||+++||||+|+ +|.+.+.+|.|.+ +||+++|+||| +||||+||++|..++... ..+.....+|||.
T Consensus 605 ~~~~~~~ViYe~f~-~~~s~~~~g~~~~~~gi~~~l~yLk-~LGvt~I~L~Pi~~~~~~--------~~~~~~~~~~GY~ 674 (844)
T 3aie_A 605 NAALDSRVMFEGFS-NFQAFATKKEEYTNVVIAKNVDKFA-EWGVTDFEMAPQYVSSTD--------GSFLDSVIQNGYA 674 (844)
T ss_dssp SHHHHTCCEEECCC-TTCCCCSSGGGCHHHHHHHTHHHHH-HTTCCEEECCCCSCBCCC--------CSSGGGTTTCSSS
T ss_pred CCccCceEEEEeCC-CcccCCCCCCcccHHHHHHHHHHHH-HCCCCeEEECCcccCCCC--------CccccccCCCCCc
Confidence 35899999999999 5666555565654 99999999999 999996666665542210 0011122479993
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
+.||++|++ ++.|+|||++||++||+ +|++||+|| +|+ |+||++ .
T Consensus 675 --~~d~~~i~e---------s~~~~~Gt~~df~~lv~~~H~~GI~Vi--------lD~-------V~NH~~--------~ 720 (844)
T 3aie_A 675 --FTDRYDLGI---------SKPNKYGTADDLVKAIKALHSKGIKVM--------ADW-------VPDQMY--------A 720 (844)
T ss_dssp --BSCTTCSSC---------SSCBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------C
T ss_pred --cccCccCCC---------CCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCccc--------C
Confidence 555544441 12279999999999998 699999999 998 999984 2
Q ss_pred cCccccccC
Q psy15051 183 QGQNFLFQG 191 (1065)
Q Consensus 183 ~~~~~~f~~ 191 (1065)
.++|+||..
T Consensus 721 ~d~~~~~~~ 729 (844)
T 3aie_A 721 LPEKEVVTA 729 (844)
T ss_dssp CSEEEEEEE
T ss_pred CCCCcceeE
Confidence 466788864
|
| >3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-16 Score=194.58 Aligned_cols=126 Identities=9% Similarity=0.028 Sum_probs=94.8
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
...+|+++||||-|...-........|+++||+++|+||| +||||+||++|..++... +.+..+..+|||.
T Consensus 657 s~~~l~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kldyLk-~LGVtaIwL~Pi~~~~~~--------~~~~~~~~~~GYd 727 (1039)
T 3klk_A 657 SNAALDSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFK-SWGITTFELAPQYNSSKD--------GTFLDSIIDNGYA 727 (1039)
T ss_dssp CSHHHHTCCEEECCCTTBCCCSSGGGCHHHHHHHTHHHHH-HTTCCEEECCCCSCBCCC--------CSSGGGTTTCSSS
T ss_pred CCcccCCcEEEccccccCCCCCCCCCCCHHHHHHHHHHHH-HcCCCEEEECccccCCcc--------cccccCcCCCCCC
Confidence 3468999999995542211122234589999999999999 999997777776664321 3334456789995
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
+.||+++.+ +|+|+||+++||++||+ +|++||+|| +|| |+||++ .
T Consensus 728 --~~d~~~~~~---------~i~~~~Gt~~efk~lV~alH~~GI~VI--------lDv-------V~NHta--------~ 773 (1039)
T 3klk_A 728 --FTDRYDLGM---------STPNKYGSDEDLRNALQALHKAGLQAI--------ADW-------VPDQIY--------N 773 (1039)
T ss_dssp --BSCTTCSSC---------SSCBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------C
T ss_pred --ccccccccc---------CCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------ccCCcC--------C
Confidence 666665543 57889999999999998 699999999 998 999985 3
Q ss_pred cCccccccCC
Q psy15051 183 QGQNFLFQGR 192 (1065)
Q Consensus 183 ~~~~~~f~~~ 192 (1065)
.++|+||+..
T Consensus 774 ~~~~e~~~~~ 783 (1039)
T 3klk_A 774 LPGKEAVTVT 783 (1039)
T ss_dssp CCEEEEEEEE
T ss_pred CCCCcceEEE
Confidence 5778888764
|
| >3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-15 Score=188.15 Aligned_cols=122 Identities=7% Similarity=0.029 Sum_probs=86.4
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
.+.||||-|...-....+.-.+++++|+++||||| +||||+||++|..++... +.+.....++||. +.|
T Consensus 829 ds~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kLdYLk-~LGITaIwL~Pi~~s~~~--------~~~~~~~~d~GYd--i~D 897 (1108)
T 3ttq_A 829 DSNLIYEGFSNFQPKATTHDELTNVVIAKNADVFN-NWGITSFEMAPQYRSSGD--------HTFLDSTIDNGYA--FTD 897 (1108)
T ss_dssp HTCCEEECCCTTCCCCSSGGGSHHHHHHHTHHHHH-HHTCCEEECCCCSCBCCC--------CSSGGGTTTCSSS--BSC
T ss_pred CCceEEEeEECCCCCCCCccchhHHHHHHHHHHHH-HcCCCEEEECCCccCCCc--------cccccccccCCcc--ccc
Confidence 36899995532211111111246669999999999 999996666665553220 1122233488985 777
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
|+++. | +|+|+||+++||++||+ +|++||+|| +|| |+||++ -.++|+
T Consensus 898 ~y~lG-f--------~i~~~yGt~edfk~LV~alH~~GI~VI--------lDv-------V~NHta--------~~de~e 945 (1108)
T 3ttq_A 898 RYDLG-F--------NTPTKYGTDGDLRATIQALHHANMQVM--------ADV-------VDNQVY--------NLPGKE 945 (1108)
T ss_dssp TTCSS-S--------SSCCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------CCCEEE
T ss_pred ccccC-c--------CCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEe-------cccccc--------CCCCcc
Confidence 77766 5 48999999999999998 699999999 998 999985 346788
Q ss_pred cccCCC
Q psy15051 188 LFQGRP 193 (1065)
Q Consensus 188 ~f~~~~ 193 (1065)
||+..+
T Consensus 946 ~f~~~r 951 (1108)
T 3ttq_A 946 VVSATR 951 (1108)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 998754
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.057 Score=66.83 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=42.9
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc---ccCCCHHHHHHHHHHHHh
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---INITSREVMRSQKDVVQS 793 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~---ln~~n~~v~~~l~~~lk~ 793 (1065)
|++||++.+-+.|..++.+++.+.+ +++|++...+ |. +..|.. ||+.+|++++++.+.+++
T Consensus 402 h~~Glk~GlW~~P~~v~~~S~l~~~-------hpdw~~~~~~--~~----~~~~~~~~~LD~t~Pea~~~~~~~l~~ 465 (720)
T 2yfo_A 402 HEQGMKFGIWIEPEMINEDSDLYRA-------HPDWAIRIQG--KK----PVRSRNQLLLDFSRKEVRDCVFDQICV 465 (720)
T ss_dssp HHTTCEEEEEECTTEECSSSHHHHH-------CGGGBCCCTT--SC----CCCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred HHCCCEEEEEecccccCCCCHHHHh-------CcceEEECCC--cC----cccCCceEEECCCCHHHHHHHHHHHHH
Confidence 7777777777777777777888776 5677764432 22 112222 999999999999988755
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.23 Score=61.12 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=42.8
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHHHHHh
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKDVVQS 793 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~~lk~ 793 (1065)
|++||++.+=+.|..++.+++.+++ +++|++...+ |. +...+.. ||+.||++++++.+.+++
T Consensus 403 h~~Glk~glW~~Pe~v~~dS~l~~~-------hPdw~l~~~~--g~---~~~~r~~~vLD~tnPevr~~i~~~l~~ 466 (745)
T 3mi6_A 403 HQQGMKFGLWFEPEMVSVDSDLYQQ-------HPDWLIHAPK--ST---PTPGRHQFVLDMARPEVVDYLFKLMSQ 466 (745)
T ss_dssp HHTTCEEEEEECTTEECSSSSHHHH-------CGGGBCCCTT--CC---CCCSSSCEEBCTTCHHHHHHHHHHHHH
T ss_pred HHCCCEEEEEEcccccCCCCHHHHh-------CcceEEEcCC--Cc---eeecCCeEEECCCCHHHHHHHHHHHHH
Confidence 7777777777777777777788877 5677764432 32 1111111 999999999999998764
|
| >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.086 Score=64.91 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=33.8
Q ss_pred CCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCccccc
Q psy15051 299 HQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKLY 365 (1065)
Q Consensus 299 ~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l~ 365 (1065)
.|--||+.||+|+ +++.+.++-++ +.|||||.+|+-..+-
T Consensus 445 ~~~vLD~tnPevr---------------------------~~i~~~l~~ll~~~GIDy~K~D~nr~i~ 485 (745)
T 3mi6_A 445 HQFVLDMARPEVV---------------------------DYLFKLMSQMIESANLDYIKWDMNRYAT 485 (745)
T ss_dssp SCEEBCTTCHHHH---------------------------HHHHHHHHHHHHHHTCSEEEECCCSCCC
T ss_pred CeEEECCCCHHHH---------------------------HHHHHHHHHHHHHCCCCEEEECCCCCCc
Confidence 4556999999997 78999998777 5699999999887774
|
| >1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.084 Score=58.90 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=45.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCc-C---CCCCCCCcCCCCcccCCC--------CCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYS-G---PNGDIGYDISNHTEVGKD--------FGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~-~---~~~~~GY~~~dy~~idp~--------~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.+.|++||++|+|+|.+. ++. . |.. | .-++.+.|. -...+.|+++|+.|+++||+||+|+
T Consensus 37 ~~~~~l~~~k~~G~N~vR~~-~~~~~~~~P~~--~---~~~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~vild~ 110 (344)
T 1qnr_A 37 DVDSTFSHISSSGLKVVRVW-GFNDVNTQPSP--G---QIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPF 110 (344)
T ss_dssp HHHHHHHHHHHTTCCEEECC-CCCEESSCCST--T---CCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEc-cccCCCCCCCC--C---ceeeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 67889999999999999994 321 1 111 0 002233222 2357899999999999999999997
Q ss_pred cc
Q psy15051 666 QT 667 (1065)
Q Consensus 666 v~ 667 (1065)
..
T Consensus 111 ~~ 112 (344)
T 1qnr_A 111 VN 112 (344)
T ss_dssp CB
T ss_pred cc
Confidence 63
|
| >1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.12 Score=62.02 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=37.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcC--CCCcccCCCCCCHHHHHHHHHHHHhcCCceeec
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDI--SNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~--~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlD 664 (1065)
.+.+.++.++++|++.|.| |.||.. .|+..-..+|-. ++.||+++|++|||+.+=
T Consensus 213 ~v~~~ad~~~~~G~~~~~I---------DdgW~~~~Gdw~~d~~kFP~---lk~lvd~lh~~Glk~Giw 269 (564)
T 1zy9_A 213 ETLKNLKLAKNFPFEVFQI---------DDAYEKDIGDWLVTRGDFPS---VEEMAKVIAENGFIPGIW 269 (564)
T ss_dssp HHHHHHHHGGGTTCSEEEE---------CTTSEEETTEEEEECTTCCC---HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEE---------CcccccccCCcccCcccCCC---HHHHHHHHHHCCCEEEEE
Confidence 7788888999999999987 223321 233322345654 999999996666665554
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.85 Score=56.49 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHhcc-cccCCCeEEEcc-CCcEEEEEEE--cCCcEEEEEEECCCC
Q psy15051 979 SHYSVYKDLTTLRATSG-AVRMGDYKISTP-NNYVFILTRT--EGSTSVYLIINLNSR 1032 (1065)
Q Consensus 979 ~l~~~~r~Li~LRk~~p-aL~~G~~~~l~~-~~~viaf~R~--~~~~~vlVv~N~s~~ 1032 (1065)
...+.+++.+.+++++. .++.|++..+.. ++++-++... ++++.+++++|....
T Consensus 617 e~~~~l~~~~~l~k~~r~li~~g~~~rl~~~~~~~~~w~~~~~d~~~avv~~~~~~~~ 674 (732)
T 2xn2_A 617 EESDQVVKQVTEYKKIREVTQFGTLYRLKASASNQCAWMMVDSNKNEAVVTVVNVMAH 674 (732)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSEEEEEECGGGTEEEEEEECTTSCEEEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCcEEEecCCCCCEeEEEEECCCCCEEEEEEEEccCC
Confidence 46678899999987764 457788765554 3445555554 444556666676543
|
| >2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.19 Score=62.22 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=30.5
Q ss_pred CCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCcc
Q psy15051 299 HQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVL 362 (1065)
Q Consensus 299 ~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~ 362 (1065)
.|--||+.||+|+ +++.+.+.-++ +.|||+|.+|...
T Consensus 444 ~~~~LD~t~Pea~---------------------------~~~~~~l~~l~~~~GIDy~K~D~n~ 481 (720)
T 2yfo_A 444 NQLLLDFSRKEVR---------------------------DCVFDQICVVLDQGKIDYVKWDMNR 481 (720)
T ss_dssp TBEEBCTTSHHHH---------------------------HHHHHHHHHHHTTSCCCEEEECCCS
T ss_pred ceEEECCCCHHHH---------------------------HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3456899999997 78999998877 5699999999743
|
| >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.77 E-value=0.43 Score=53.63 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=45.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC--CCC---CHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK--DFG---TMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp--~~G---t~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+..+.|+.||++|+|+|-|.+....... ..-+. .+| +.+.+.+++++|+++||+|+++.-+
T Consensus 54 ~~~~~l~~lk~~g~N~VrL~v~~~~~~~---------~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i 119 (343)
T 3civ_A 54 EARASMRALAEQPFNWVTLAFAGLMEHP---------GDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTV 119 (343)
T ss_dssp HHHHHHHHHHHSSCSEEEEEEEEEESST---------TCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEEeeecCCCC---------CCCcccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 5568899999999999999765332211 11111 233 6899999999999999999998655
|
| >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A | Back alignment and structure |
|---|
Probab=87.28 E-value=0.61 Score=50.89 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
..+.++.||++|+|+|-| |+... ..|.. ...+.++++|+.|.++||+||+|+-
T Consensus 33 ~~~~~~~i~~~G~N~VRi-~~~~~----~~~~~----------~~~~~ld~~v~~a~~~Gi~Vild~H 85 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRI-VLSDG----GQWEK----------DDIDTIREVIELAEQNKMVAVVEVH 85 (294)
T ss_dssp HHHHHHHHHHTTCSEEEE-EECCS----SSSCC----------CCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hHHHHHHHHHcCCCEEEE-EecCC----CccCc----------cHHHHHHHHHHHHHHCCCEEEEEec
Confidence 456799999999999999 55421 01211 3589999999999999999999953
|
| >3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A | Back alignment and structure |
|---|
Probab=87.17 E-value=0.48 Score=54.40 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=39.7
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCC-CCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDF-GTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~-Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|. |. |+......-+|-. |..+-++++|+.|+++||+||||+-
T Consensus 76 e~D~~~ik~~G~N~VRip-i~--------~~~~~~~~~~py~~~~~~~ld~vV~~a~~~Gl~VILDlH 134 (399)
T 3n9k_A 76 EQDFKQISNLGLNFVRIP-IG--------YWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLH 134 (399)
T ss_dssp HHHHHHHHHTTCCEEEEE-EE--------GGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEc-cc--------HHHccCCCCCccchhHHHHHHHHHHHHHHCCCEEEEEec
Confidence 456889999999999883 21 1110000011111 4689999999999999999999964
|
| >3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} | Back alignment and structure |
|---|
Probab=86.65 E-value=0.63 Score=50.60 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=41.2
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCC--CCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDF--GTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~--Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.|+.+|++|+|+|-+- ++........+.... ......+ .-.+.++++++.|.++||+||+|+-.
T Consensus 43 ~~~~~l~~~k~~G~N~vRv~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil~~~~ 112 (351)
T 3vup_A 43 RIEPEFKKLHDAGGNSMRLW-IHIQGETTPAFNDQG-FVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCLWN 112 (351)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-EEETTSSSSEECTTS-CEEESCSSSCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEC-cccccccCccccccc-ccccccccHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 45677999999999999872 211110000000000 0011111 22688999999999999999999753
|
| >2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=0.6 Score=57.86 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=31.7
Q ss_pred CCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHH-HcCCCeeeecCcccc
Q psy15051 299 HQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWL-KRGVDGFGMDSVLKL 364 (1065)
Q Consensus 299 ~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl-~~GvDGfRlDav~~l 364 (1065)
.|--||+.||+|+ +++.+.+.-++ +.|||+|.+|....+
T Consensus 448 ~~~~LD~t~Pev~---------------------------~~i~~~l~~~~~~~GVD~~K~D~~~~~ 487 (732)
T 2xn2_A 448 NQYVLELGRKEVR---------------------------DNIFEQMVKILDSKKIDYIKWDMNRSL 487 (732)
T ss_dssp TBEEBCTTSHHHH---------------------------HHHHHHHHHHHTTSCCCEEEECCCCCC
T ss_pred ceEEEcCCCHHHH---------------------------HHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 4456899999997 77888777666 569999999998664
|
| >3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=0.59 Score=51.68 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=40.6
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCc-CCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYD-ISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~-~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|. |.-. ... ...-+.+++.+ .+.++++|+.|+++||+||+|+-
T Consensus 44 ~~d~~~l~~~G~n~vRi~-i~w~-----~~~~~~~~~~~~~~~--~~~~d~~v~~a~~~Gi~vildlh 103 (320)
T 3nco_A 44 DEYFKIIKERGFDSVRIP-IRWS-----AHISEKYPYEIDKFF--LDRVKHVVDVALKNDLVVIINCH 103 (320)
T ss_dssp HHHHHHHHHHTCCEEEEC-CCGG-----GSBCSSTTCCBCHHH--HHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEEe-eehH-----HhcCCCCCCccCHHH--HHHHHHHHHHHHHCCCEEEEEcC
Confidence 567999999999999994 3210 000 01112233321 68899999999999999999964
|
| >3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A | Back alignment and structure |
|---|
Probab=85.68 E-value=0.6 Score=52.03 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=40.0
Q ss_pred hhhHHH-HHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 601 EKIDYL-KELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 601 ~kLdYL-k~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
+.++.| |++|+|+|-+ |++... -|| .+||. ..+.++++|+.|.++||+||+|+-
T Consensus 72 ~~~~~l~~~~G~N~VRi-~~~~~~---~~~------~~~~~--~~~~ld~~v~~a~~~Gi~VilD~H 126 (327)
T 3pzt_A 72 DSLKWLRDDWGITVFRA-AMYTAD---GGY------IDNPS--VKNKVKEAVEAAKELGIYVIIDWH 126 (327)
T ss_dssp HHHHHHHHHTCCSEEEE-EEESST---TST------TTCGG--GHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEE-EeEECC---CCc------ccCHH--HHHHHHHHHHHHHHCCCEEEEEec
Confidence 457888 6899999999 454321 132 22443 289999999999999999999954
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=0.77 Score=51.33 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=40.0
Q ss_pred hhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+-+.-||++|+|+|-|- |.-.|. +.+-..+.+.+++++|+++||+|++|+-.
T Consensus 31 d~~~ilk~~G~N~VRi~-~w~~P~--------------~g~~~~~~~~~~~~~A~~~GlkV~ld~Hy 82 (332)
T 1hjs_A 31 PLENILAANGVNTVRQR-VWVNPA--------------DGNYNLDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp CHHHHHHHTTCCEEEEE-ECSSCT--------------TCTTSHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cHHHHHHHCCCCEEEEe-eeeCCC--------------CCcCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45778899999999974 321111 33446899999999999999999999644
|
| >1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A | Back alignment and structure |
|---|
Probab=85.41 E-value=0.85 Score=51.06 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=45.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcC---CCCCCCCcCCCCcccCCCCC---CHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSG---PNGDIGYDISNHTEVGKDFG---TMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~---~~~~~GY~~~dy~~idp~~G---t~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-+.+.|+.||++|+|+|-|. +.-. +.. -. ...|+...+|.+. ..+.++++|+.|.++||+||+|+-
T Consensus 45 ~~~~~~~~~~~~G~n~vRi~-~~~~~~~~~~-~~-~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vild~h 116 (358)
T 1ece_A 45 DYRSMLDQIKSLGYNTIRLP-YSDDILKPGT-MP-NSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRH 116 (358)
T ss_dssp CHHHHHHHHHHTTCCEEEEE-EEGGGGSTTC-CC-CSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEee-ccHHHhcCCC-CC-ccccccccCccccCccHHHHHHHHHHHHHHCCCEEEEecC
Confidence 45788999999999999885 3211 110 00 1123323556553 578899999999999999999965
|
| >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=0.9 Score=49.71 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=38.7
Q ss_pred hhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
+.++.||++|+|+|-| |+... ..|. .+ ..+.++++|+.|.++||+||+|+-
T Consensus 36 ~~~~~lk~~G~N~VRi-~~~~~----~~w~------~~----~~~~ld~~v~~a~~~Gi~Vild~h 86 (302)
T 1bqc_A 36 QAFADIKSHGANTVRV-VLSNG----VRWS------KN----GPSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp THHHHHHHTTCSEEEE-EECCS----SSSC------CC----CHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred HHHHHHHHcCCCEEEE-EccCC----cccC------CC----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 6788999999999998 44321 0111 11 368999999999999999999953
|
| >2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=84.03 E-value=0.73 Score=54.40 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=41.3
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.++.||++|+|+|-| |+.-.. .+|.... ..+|.+ .++.++++|+.|.++||+||||+
T Consensus 42 ~~d~~~i~~~G~N~VRi-pv~~~~---~~~~~~~--~~~~~~-~l~~ld~vv~~a~~~Gl~VIlD~ 100 (491)
T 2y8k_A 42 YDQIARVKELGFNAVHL-YAECFD---PRYPAPG--SKAPGY-AVNEIDKIVERTRELGLYLVITI 100 (491)
T ss_dssp HHHHGGGGGGTCCEEEE-EEEECC---TTTTSTT--CCCTTT-THHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEE-Cceeec---ccccCCC--ccChhH-HHHHHHHHHHHHHHCCCEEEEEC
Confidence 45678899999999997 653211 1221110 233332 38899999999999999999995
|
| >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} | Back alignment and structure |
|---|
Probab=83.71 E-value=1.2 Score=50.13 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=41.3
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+.+.|+.||++|+|+|-+ |+... + .|. + ...+.++++|+.|.++||+||+|+-.
T Consensus 56 ~~~~i~~lk~~G~N~VRi-p~~~~--~--~~~--------~--~~l~~ld~~v~~a~~~GiyVIlDlH~ 109 (345)
T 3jug_A 56 ASTAIPAIAEQGANTIRI-VLSDG--G--QWE--------K--DDIDTVREVIELAEQNKMVAVVEVHD 109 (345)
T ss_dssp HHHHHHHHHHTTCSEEEE-EECCS--S--SSC--------C--CCHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCCEEEE-EecCC--C--ccC--------H--HHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 356799999999999999 55321 1 121 1 24899999999999999999999653
|
| >3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* | Back alignment and structure |
|---|
Probab=83.18 E-value=0.94 Score=51.66 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=42.9
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC----------C-CCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP----------N-GDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~----------~-~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-+.+.|+.+|++|+|+|-+--+.+.. . ...-|+.-.. ++..--..+.|.++|+.|+++||+||||+.
T Consensus 44 ~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~--~~~~~~~~~~LD~~i~~A~k~GI~viL~l~ 121 (383)
T 3pzg_A 44 MIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEG--ISNAQNGFERLDYTIAKAKELGIKLIIVLV 121 (383)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTT--CSSCEEHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCccccccc--ccchHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 45678999999999999884332110 0 0001221001 111011278999999999999999999976
Q ss_pred c
Q psy15051 667 T 667 (1065)
Q Consensus 667 ~ 667 (1065)
-
T Consensus 122 ~ 122 (383)
T 3pzg_A 122 N 122 (383)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=9.1 Score=47.30 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhc-ccccCCCeEEEc-c-CCcEEEEEEE--cCCcEEEEEEECCC
Q psy15051 980 HYSVYKDLTTLRATS-GAVRMGDYKIST-P-NNYVFILTRT--EGSTSVYLIINLNS 1031 (1065)
Q Consensus 980 l~~~~r~Li~LRk~~-paL~~G~~~~l~-~-~~~viaf~R~--~~~~~vlVv~N~s~ 1031 (1065)
-.+.+|++|++.|++ +.++.|++..+. + +++..++... ++++.+++++|...
T Consensus 614 ~~~~lk~~Ia~yK~~r~li~~G~~~rl~~p~~~~~~~~~~v~~d~~~avv~~~~~~~ 670 (729)
T 4fnq_A 614 EKQMIKQQVAFYKDVRRLVQFGTFYRLLSPFEGNEAAWMFVSADRSEALVAYFRVLA 670 (729)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSEEEEEECTTSSSEEEEEEECTTSSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCceEEecCCCCCCCeEEEEEECCCCCEEEEEEEecCC
Confidence 456778999998875 456788875544 2 3345555544 45556677777543
|
| >3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=1.2 Score=49.83 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=40.3
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC-CCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS-NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~-dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|.=-... +.+. .-+.+++. ..+.++++|+.|.++||+||+|+-
T Consensus 45 ~~di~~i~~~G~n~vRipi~w~~------~~~~~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vildlH 104 (345)
T 3ndz_A 45 HAMINKIKEAGFNTLRLPVTWDG------HMGAAPEYTIDQT--WMKRVEEIANYAFDNDMYVIINLH 104 (345)
T ss_dssp HHHHHHHHHHTCCEEEECCCCTT------SBCCTTTCCBCHH--HHHHHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeeehHH------hCCCCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEecC
Confidence 56799999999999998321111 0000 01123322 268899999999999999999954
|
| >1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=81.69 E-value=1.2 Score=51.37 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=40.2
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-CCC-CHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-DFG-TMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-~~G-t~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.++.||++|+|+|-| ||.-. .+.+. .-+| ..| ..+.++++|+.|.++||+||||+-.
T Consensus 76 e~d~~~i~~~G~N~VRi-pi~~~-----~~~~~---~~~py~~~~~l~~ld~vv~~a~~~Gi~VilDlH~ 136 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRI-PIGYW-----AFQIL---DDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHG 136 (408)
T ss_dssp HHHHHHHHHTTCCEEEE-EEEGG-----GTCCC---TTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEc-cCCHH-----HcccC---CCCCCccccHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 45688999999999998 33210 00000 0011 014 5789999999999999999999653
|
| >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=81.09 E-value=1.2 Score=49.67 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=40.7
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC-CCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS-NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~-dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|.--... +.+. +.+.+++ +..+.++++|+.|.++||+||+|+-
T Consensus 39 ~~d~~~i~~~G~n~vRi~i~~~~------~~~~~~p~~~~~--~~~~~ld~~v~~a~~~Gi~vildlh 98 (341)
T 1vjz_A 39 EEDFLWMAQWDFNFVRIPMCHLL------WSDRGNPFIIRE--DFFEKIDRVIFWGEKYGIHICISLH 98 (341)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGG------TSCSSCTTCCCG--GGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeeCCHHH------hcCCCCCCcCCH--HHHHHHHHHHHHHHHcCCEEEEEec
Confidence 66789999999999998421111 0010 0111221 3578999999999999999999964
|
| >3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* | Back alignment and structure |
|---|
Probab=80.93 E-value=1.3 Score=51.76 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=46.1
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCC-cccCCCC---CCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNH-TEVGKDF---GTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy-~~idp~~---Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+-+.+.++.||++|+|+|-|. |.-.. .. +-.+... +.++|.+ ...+.++++|+.|.++||+||+|+-.
T Consensus 84 ~~~~~~i~~ik~~G~N~VRip-i~~~~l~~--~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH~ 156 (458)
T 3qho_A 84 RNWEDMLLQIKSLGFNAIRLP-FCTESVKP--GTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHR 156 (458)
T ss_dssp SCHHHHHHHHHHTTCCEEEEE-EETGGGST--TCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEe-eeHHHhCC--CCCccccccccCccccchHHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 356788999999999999994 21100 00 0001111 3456654 34789999999999999999999654
|
| >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=80.84 E-value=0.89 Score=51.60 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=40.1
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|.--... +.+..-+.+++. ..+.++++|+.|.++||+||+|+-
T Consensus 64 ~~di~~i~~~G~n~vRipv~w~~------~~~~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vild~H 122 (380)
T 1edg_A 64 KQMIDAIKQKGFNTVRIPVSWHP------HVSGSDYKISDV--WMNRVQEVVNYCIDNKMYVILNTH 122 (380)
T ss_dssp HHHHHHHHHHTCCEEEECCCCGG------GEETTTTEECHH--HHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEecccHHh------hcCCCCCcCCHH--HHHHHHHHHHHHHHCCCEEEEeCC
Confidence 56789999999999998421111 111000122221 267899999999999999999954
|
| >4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A* | Back alignment and structure |
|---|
Probab=80.77 E-value=3.5 Score=51.06 Aligned_cols=47 Identities=2% Similarity=-0.130 Sum_probs=31.5
Q ss_pred cccccCccceeecccccCCCccccccccccccccCcH--------HHHHHHHH-HHhCCCEEE
Q psy15051 96 AVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYM--------KKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 96 ~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~--------~df~~Li~-ah~~gi~vi 149 (1065)
.++..||.|.|+|--+-.+- ..-...+|.| ..|+.|++ .|++|||+-
T Consensus 354 ~aa~lG~e~fviDDGWf~~r-------~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~GmkfG 409 (729)
T 4fnq_A 354 TEAELGIELFVLDDGWFGKR-------DDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQFG 409 (729)
T ss_dssp HHHHHTCCEEEECSCCBTTC-------CSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEEE
T ss_pred HHHhcCccEEEEcceeecCC-------CCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEEE
Confidence 45678998888887764321 1111234443 46999998 699999996
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=80.32 E-value=1.5 Score=48.92 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=40.1
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-+.-||++|+|+|-|- |+-.|. +.+-+.+.+++++++|+++||+|++|+-.
T Consensus 30 ~~~~~ilk~~G~n~vRlr-i~v~P~--------------~g~~d~~~~~~~~~~ak~~Gl~v~ld~hy 82 (334)
T 1fob_A 30 QALETILADAGINSIRQR-VWVNPS--------------DGSYDLDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp CCHHHHHHHHTCCEEEEE-ECSCCT--------------TCTTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred chHHHHHHHcCCCEEEEE-EEECCC--------------CCccCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 345789999999999982 221121 22344899999999999999999999644
|
| >1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 | Back alignment and structure |
|---|
Probab=80.09 E-value=1.5 Score=49.29 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=41.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-CC--CCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-DF--GTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-~~--Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-+.+.|+.+|++|+|+|-+. ++... .|. ....+| .| ...+.++++|+.|+++||+||+|+..
T Consensus 43 ~~~~dl~~~k~~G~N~vR~~-~~~~~--~w~-----~~~~~~g~~~~~~~~~ld~~i~~a~~~Gi~vil~l~~ 107 (373)
T 1rh9_A 43 KVTNTFQQASKYKMNVARTW-AFSHG--GSR-----PLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 107 (373)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-SSCSS--SSS-----CSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHCCCCEEEEC-eecCC--CCc-----cccCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45778999999999999983 22110 011 001111 11 12567889999999999999999653
|
| >3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=1.2 Score=48.80 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=40.2
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|.--...-.. ...-+.+|+ ...+.++++|+.|.++||+||+|+-
T Consensus 36 ~~d~~~l~~~G~n~vR~~i~w~~~~~-----~~~~~~~~~--~~~~~~d~~v~~a~~~Gi~vild~h 95 (317)
T 3aof_A 36 DEFFDIIKEAGFSHVRIPIRWSTHAY-----AFPPYKIMD--RFFKRVDEVINGALKRGLAVVINIH 95 (317)
T ss_dssp THHHHHHHHHTCSEEEECCCGGGGBC-----SSTTCCBCH--HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeccHHHhcC-----CCCCCcCCH--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence 56789999999999999622111000 000112332 1367789999999999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1065 | ||||
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 3e-66 | |
| d1uoka2 | 479 | c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus | 6e-09 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 1e-61 | |
| d1m53a2 | 478 | c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle | 3e-08 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 3e-47 | |
| d1lwha2 | 391 | c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther | 3e-05 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 9e-46 | |
| d1wzaa2 | 409 | c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth | 3e-07 | |
| d1eh9a3 | 400 | c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol | 2e-33 | |
| d1h3ga3 | 422 | c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d | 7e-31 | |
| d2bhua3 | 420 | c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro | 3e-29 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 3e-27 | |
| d1j0ha3 | 382 | c.1.8.1 (A:124-505) Neopullulanase, central domain | 4e-04 | |
| d1qhoa4 | 407 | c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase | 4e-27 | |
| d1ht6a2 | 347 | c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor | 5e-27 | |
| d2guya2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 2e-26 | |
| d2guya2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 0.001 | |
| d1ea9c3 | 382 | c.1.8.1 (C:122-503) Maltogenic amylase, central do | 3e-26 | |
| d3bmva4 | 406 | c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase | 1e-25 | |
| d3bmva4 | 406 | c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase | 0.001 | |
| d1ji1a3 | 432 | c.1.8.1 (A:123-554) Maltogenic amylase, central do | 3e-25 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 1e-24 | |
| d1wzla3 | 382 | c.1.8.1 (A:121-502) Maltogenic amylase, central do | 0.002 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 2e-24 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 1e-08 | |
| d1gjwa2 | 572 | c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga | 6e-06 | |
| d1hvxa2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu | 3e-24 | |
| d1r7aa2 | 434 | c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac | 7e-24 | |
| d2aaaa2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 6e-23 | |
| d2aaaa2 | 381 | c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill | 0.002 | |
| d1m7xa3 | 396 | c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz | 5e-22 | |
| d1e43a2 | 393 | c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera | 7e-22 | |
| d1g5aa2 | 554 | c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc | 7e-22 | |
| d1ud2a2 | 390 | c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu | 5e-21 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 5e-21 | |
| d1bf2a3 | 475 | c.1.8.1 (A:163-637) Isoamylase, central domain {Ps | 2e-04 | |
| d2fhfa5 | 563 | c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p | 1e-20 | |
| d2fhfa5 | 563 | c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p | 2e-13 | |
| d2fhfa5 | 563 | c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p | 5e-04 | |
| d2d3na2 | 394 | c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu | 1e-19 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 2e-19 | |
| d1iv8a2 | 653 | c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase | 1e-09 | |
| d1mxga2 | 361 | c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo | 2e-16 | |
| d1ua7a2 | 344 | c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu | 4e-16 | |
| d1gcya2 | 357 | c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m | 1e-14 | |
| d1g94a2 | 354 | c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa | 3e-09 | |
| d1hx0a2 | 403 | c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s | 3e-08 | |
| d1jaea2 | 378 | c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea | 1e-07 |
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 229 bits (583), Expect = 3e-66
Identities = 120/486 (24%), Positives = 197/486 (40%), Gaps = 63/486 (12%)
Query: 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVE 612
+K+WWK +V+YQI SF DSN DGIGDLRG II K+DYLKELG++
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG---------------IISKLDYLKELGID 46
Query: 613 TLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
+WL+P Y PN D GYDIS++ ++ +FGTMED+DEL+ +H + + + + S
Sbjct: 47 VIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSD 106
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ + +K+ + ++ P G NW A A + L F
Sbjct: 107 EHNWFIESRKSKDNKYRDYYIW-RPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSK 165
Query: 733 NHS--------------SNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINI 778
W K ++ K+ T + +
Sbjct: 166 KQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHK 225
Query: 779 TSREVMRSQKDVVQSFPLIL-----MIITEAYSPSLEKVAKYYGTGDT------QGTHLS 827
K + + +L M + E + E+ Y G Q H+
Sbjct: 226 HFMNGPNIHKYLHEMNEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMD 285
Query: 828 VNYEIMNKFGATS-NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPD----- 881
++ K+ + L+ + + K+L W+S H R+ +R+ D
Sbjct: 286 LDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRI 345
Query: 882 -LVDAMNMLTLLLPGTAVTFAGDELGMES-PILRYEDQRDPEGYIFGKDNYLK------- 932
+ + ++ GT + G+E+GM + ++ RD E K+ ++
Sbjct: 346 ESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGEDIEK 405
Query: 933 -------VCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYK 985
RD +R P QW+DQ +AGF+ + W+ V+PNY +N + + K S + YK
Sbjct: 406 VMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYK 465
Query: 986 DLTTLR 991
L LR
Sbjct: 466 KLIELR 471
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Score = 57.4 bits (137), Expect = 6e-09
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRG 54
+K+WWK +V+YQI SF DSN DGIGDLRG
Sbjct: 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRG 32
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 216 bits (549), Expect = 1e-61
Identities = 111/484 (22%), Positives = 189/484 (39%), Gaps = 64/484 (13%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
WWK V YQI SFKD+N+DGIGD+RG IIEK+DYLK LG++ +
Sbjct: 4 AWWKEAVFYQIYPRSFKDTNDDGIGDIRG---------------IIEKLDYLKSLGIDAI 48
Query: 615 WLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKG---------------- 658
W+ P Y PN D GYDISN+ ++ K++GTMEDFD LV + +
Sbjct: 49 WINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQH 108
Query: 659 KQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESM 718
I K KN ++ Y S + + + +
Sbjct: 109 PWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQP 168
Query: 719 EHRAGMKILVEFVPNHSSNKHDWFI--KSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHI 776
+ + E + D + + Y+ + + + +
Sbjct: 169 DLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMG 228
Query: 777 NITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT------HLSVNY 830
R + + V+ + + E + L++ ++++ + + ++
Sbjct: 229 PNIHRYIQEMNRKVLSRYD--VATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDR 286
Query: 831 EIMNKFGATS-NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPD-------L 882
+ ++ S + +++ ++ W+++ + H R + + D
Sbjct: 287 DSNERWRHKSWSLSQFRQIISKMDVTVGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREAS 346
Query: 883 VDAMNMLTLLLPGTAVTFAGDELGM-ESPILRYEDQRDPEGYIFGKD------------- 928
A+ +TL T + G ELGM P + + D E F +D
Sbjct: 347 AKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKVTATEFL 406
Query: 929 -NYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDL 987
N RD SR PFQWND NAGF++ K W ++PNY +NA+ E+ + S + YK +
Sbjct: 407 DNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKM 466
Query: 988 TTLR 991
LR
Sbjct: 467 IQLR 470
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Score = 55.0 bits (131), Expect = 3e-08
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRG 54
WWK V YQI SFKD+N+DGIGD+RG
Sbjct: 4 AWWKEAVFYQIYPRSFKDTNDDGIGDIRG 32
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 172 bits (435), Expect = 3e-47
Identities = 75/435 (17%), Positives = 146/435 (33%), Gaps = 57/435 (13%)
Query: 561 VIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFY 620
+ YQI V SF+D N DG+GD RG + + YLKELG++ +WL P +
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRG---------------LKNAVSYLKELGIDFVWLMPVF 46
Query: 621 SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYM 680
S + GYD+ + ++G+ +F E+++ H G + + + + L+
Sbjct: 47 SSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIK-VVLDLPIHHTGFLHTWFQK 104
Query: 681 YAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHD 740
+ + V+ N + W G F P +D
Sbjct: 105 ALKGDPHYRDYYVWANKETDLDERREWDGEKIW----HPLEDGRFYRGLFGPFSPDLNYD 160
Query: 741 WFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMI 800
+ + G G + KH+ T + +R K + L +
Sbjct: 161 NPQVFDEMKRLVLHLLDM-----GVDGFRFDAAKHMRDTIEQNVRFWKYFLSD--LKGIF 213
Query: 801 ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLK-SLPSG 859
+ E ++ + +N++ + ++ ++ + + +
Sbjct: 214 LAEIWAE------ARMVDEHGRIFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVIAKD 267
Query: 860 KWSSWMVGGHSITRIATRYSPDLVDAMNM---LTLLLPGTAVTFAGDELGMESPILRYED 916
H ++R+A+ + + + + LPG + F GDELGM+
Sbjct: 268 YLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMK-------- 319
Query: 917 QRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKT 976
Y K + PF WN+ W + + ++ + +K+
Sbjct: 320 -----------GVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRD 368
Query: 977 KPSHYSVYKDLTTLR 991
S S T R
Sbjct: 369 PDSILSHTLGWTRFR 383
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 32 VIYQILVPSFKDSNNDGIGDLRG 54
+ YQI V SF+D N DG+GD RG
Sbjct: 2 IGYQIYVRSFRDGNLDGVGDFRG 24
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 168 bits (425), Expect = 9e-46
Identities = 92/454 (20%), Positives = 155/454 (34%), Gaps = 57/454 (12%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYL--------K 607
+ K+ Y+I V SF DS+ DGIGDL+ GIIEK+DYL
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLK---------------GIIEKLDYLNDGDPETIA 45
Query: 608 ELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667
+LGV +WL P + P+ GYD++++ ++ D+GT+EDF +LV+ H +G K+
Sbjct: 46 DLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRG-IKVIIDLP 103
Query: 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKIL 727
N + + + + + + G
Sbjct: 104 INHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWH--YSPTGMYYGYF 161
Query: 728 VEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQ 787
+P+ + N + K + V L+G P N T E R +
Sbjct: 162 WSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQE 221
Query: 788 KDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLEN 847
+ + P+ L+ S ++ KY K ++
Sbjct: 222 IE--EVKPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKH 279
Query: 848 VVNAYLKSLPSGK-WSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAVTFAGDE 904
+ Y + + G + + H RI + D + L LPG + G+E
Sbjct: 280 IYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEE 339
Query: 905 LGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPN 964
+GM G+ + R PFQW + G + W P N
Sbjct: 340 IGMR-----------------GQGP-----HEVIREPFQWYNGSGEGET---YWEPAMYN 374
Query: 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998
+ + E+K S + Y+ L R +
Sbjct: 375 DGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFY 408
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRG 54
+ K+ Y+I V SF DS+ DGIGDL+G
Sbjct: 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKG 28
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Score = 131 bits (330), Expect = 2e-33
Identities = 65/446 (14%), Positives = 131/446 (29%), Gaps = 59/446 (13%)
Query: 552 NQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKEL 609
N + + K + +IY+I V +F G G +I K+DYLK+L
Sbjct: 2 NNETFLKKEDLIIYEIHVGTFTPE-----GTFEG---------------VIRKLDYLKDL 41
Query: 610 GVETLWLTPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQ---KISQK 665
G+ + + P P D GYD V +G E F +LV H KG +
Sbjct: 42 GITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYN 101
Query: 666 QTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMK 725
+ + ++ + + ++ + +N ++
Sbjct: 102 HVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAE---SDEVRKFILENVEYWIKEYNVDG 158
Query: 726 ILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMR 785
++ V ++ + N V + P K + +
Sbjct: 159 FRLDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVD 218
Query: 786 SQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDL 845
+ ++ +L+ + K Y + V + F ++ + +
Sbjct: 219 DFHHSIHAYLTGERQGYYTDFGNLDDIVKSY-------KDVFVYDGKYSNFRRKTHGEPV 271
Query: 846 ENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDEL 905
+ G RI + L LL P + F G+E
Sbjct: 272 GELDGCNFVVYIQNHDQVGNRGKGE--RIIKLVDRESYKIAAALYLLSPYIPMIFMGEEY 329
Query: 906 GMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNY 965
G E+P + D D + ++ ++ + + + F+ +K +
Sbjct: 330 GEENPFYFFSDFSDSKLIQGVREGRK---KENGQDTDPQD---ESTFNASKLSWKID--- 380
Query: 966 WTLNAQAEKKTKPSHYSVYKDLTTLR 991
+S YK L +R
Sbjct: 381 ------------EEIFSFYKILIKMR 394
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Score = 124 bits (311), Expect = 7e-31
Identities = 66/469 (14%), Positives = 121/469 (25%), Gaps = 70/469 (14%)
Query: 552 NQKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLK 607
++ + IYQI+ F + + ND + +R + R+ G G I+ +DY+
Sbjct: 4 QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIA 63
Query: 608 ELGVETLWLTPFY---SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQ 664
LG LW TP + GY ++H + +G+ EDF L
Sbjct: 64 GLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEAR--------- 114
Query: 665 KQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGM 724
R L + + I + + + G ++ +
Sbjct: 115 ----KRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQAD 170
Query: 725 KILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVM 784
N W + + +
Sbjct: 171 SENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGL----RIDTYGYSDGAFL 226
Query: 785 RSQKDVVQSFPLILMIITEAYSPSLEKVAKY---------YGTGDTQGTHLSVNYEIMNK 835
+ + L ++ E +S + VA++ Y + + + N
Sbjct: 227 TEYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKANFDGYTSHLPSLMDFPLVDAMRNA 286
Query: 836 FGATSNAKDLENVVNAYLKSLP--SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLL 893
T L V + G H + R+ + D L L+
Sbjct: 287 LSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFDRWRMNLVFLM 346
Query: 894 --PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAG 951
P ++GDE+ M S D R P W +
Sbjct: 347 TMPRIPQFYSGDEILMTST------------VKGRDDAS---YRR--DFPGGWAGDKANA 389
Query: 952 FSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
FS A + + + + L R + G
Sbjct: 390 FSGAGLT----------------SQQRAAQDLVRKLANWRKNQPVIHNG 422
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Score = 119 bits (298), Expect = 3e-29
Identities = 67/445 (15%), Positives = 107/445 (24%), Gaps = 41/445 (9%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
+ V Y++ V +F G R EK+ YLKELGV +
Sbjct: 13 KLADCVFYEVHVGTFTPE-----GTYRA---------------AAEKLPYLKELGVTAIQ 52
Query: 616 LTPFY-SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQL 674
+ P GYD + +G ED LV H + + +H
Sbjct: 53 VMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAH---RLGLGVFLDVVYNHFG 109
Query: 675 YCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNH 734
Y+ + F + + R A L +
Sbjct: 110 PSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFDGL--RLDAT 167
Query: 735 SSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQSF 794
D ++ + L + + +N +
Sbjct: 168 PYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVT 227
Query: 795 PLILMI-ITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYL 853
Y E +A G ++ G S+A + N V
Sbjct: 228 LTGEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQ 287
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGDELGMESPILR 913
G S + L L LP T + F G E +P
Sbjct: 288 NHDQIGNRPLGERLHQS-----DGVTLHEYRGAAALLLTLPMTPLLFQGQEWAASTPFQF 342
Query: 914 YEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAE 973
+ D G + R F E+ +A+ W E
Sbjct: 343 FSDHAGELGQAVSEG------RKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGE 396
Query: 974 KKTKPSHYSVYKDLTTLRATSGAVR 998
+Y+DL LR +
Sbjct: 397 HA---RTLRLYRDLLRLRREDPVLH 418
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 113 bits (282), Expect = 3e-27
Identities = 62/360 (17%), Positives = 125/360 (34%), Gaps = 31/360 (8%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG----LGIIEKIDYLKELG 610
+W K+TV YQI F + N + + + GII+ +DYL +LG
Sbjct: 7 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 66
Query: 611 VETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNR 670
+ ++LTP + P + YD +++ EV FG E L+ H +
Sbjct: 67 ITGIYLTPIFRSP-SNHKYDTADYFEVDPHFGDKETLKTLIDRCH-------------EK 112
Query: 671 SHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEF 730
++ + V+ N + + + E + + +
Sbjct: 113 GIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQM 172
Query: 731 VPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV 790
+++N + + DG + I+ R +
Sbjct: 173 PKLNTANPEVKRYLLDVATYWIREFDI--DGWRL------DVANEIDHEFWREFRQEVKA 224
Query: 791 VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVN 850
++ IL I P L + ++ + T + + + A A + +V++
Sbjct: 225 LKPDVYILGEIWHDAMPWL-RGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLH 283
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPDL--VDAMNMLTLLLPGTAVTFAGDELGME 908
+Y ++ + ++G H +RI T D+ V + + L G+ + GDE+GM
Sbjct: 284 SYPNNVNEAAF--NLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTGSPCIYYGDEIGMT 341
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Score = 41.6 bits (96), Expect = 4e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGK 55
+W K+TV YQI F + N +
Sbjct: 7 DWVKDTVWYQIFPERFANGNPSISPEGSRP 36
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Score = 113 bits (282), Expect = 4e-27
Identities = 62/372 (16%), Positives = 113/372 (30%), Gaps = 25/372 (6%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGL------GIIEKIDYLKE 608
K VIYQI++ F D + + + G+ +K+ YLK+
Sbjct: 4 ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQ 63
Query: 609 LGVETLWLTPFY--------SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQ 660
LGV T+WL+P + G GY + ++ + FG FD LV H G +
Sbjct: 64 LGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIK 123
Query: 661 KISQKQTKNRS--HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESM 718
I + + + Y + G + N N +
Sbjct: 124 VIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRYEA 183
Query: 719 EHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINI 778
+ + + + S Q + V + + +
Sbjct: 184 QWKNFTDPAGFSLADLSQENGTIA----QYLTDAAVQLVAHGADGLRIDAVKHFNSGFSK 239
Query: 779 TSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-G 837
+ + + +KD+ F + + + + + +Y +N I N F
Sbjct: 240 SLADKLYQKKDI---FLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGT 296
Query: 838 ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGT 896
T DL N+VN + + H ++R + S + L GT
Sbjct: 297 FTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGT 356
Query: 897 AVTFAGDELGME 908
+ G E M
Sbjct: 357 PSIYYGTEQYMA 368
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Score = 111 bits (278), Expect = 5e-27
Identities = 44/357 (12%), Positives = 97/357 (27%), Gaps = 37/357 (10%)
Query: 563 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS 621
+Q+L F +S G ++ K+D + GV +WL P
Sbjct: 1 HQVLFQGFNWESWKQSGGWYNM---------------MMGKVDDIAAAGVTHVWLPPPSH 45
Query: 622 GPNGDIGYDISNHTEVGKD-FGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYM 680
+ + GY ++ +G + L+ +H K + + + H
Sbjct: 46 SVSNE-GYMPGRLYDIDASKYGNAAELKSLIGALH--------GKGVQAIADIVINHRCA 96
Query: 681 YAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSN-KH 739
D I+ ++ G + ++ + + A + +F + +
Sbjct: 97 D--YKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLN 154
Query: 740 DWFIKSAQKIDPYTNYYVWKDG--LNGKPGTPPNNWKHINITSREVMRSQK---DVVQSF 794
D + ++ + + D L+ G P K + + + ++
Sbjct: 155 DRVQRELKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGG 214
Query: 795 PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNY-EIMNKFGATSNAKDLENVVNAYL 853
+A+ +L G + G I+N + ++ A
Sbjct: 215 DGKPNYDQDAHRQNLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPG 274
Query: 854 KSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGME 908
+ V H + M +L PG F
Sbjct: 275 VMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWG 331
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Score = 110 bits (275), Expect = 2e-26
Identities = 52/359 (14%), Positives = 106/359 (29%), Gaps = 33/359 (9%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
W++ IY +L F ++ + ++Y T GII+K+DY++ +G +W
Sbjct: 5 DWRSQSIYFLLTDRFARTDGSTTATCNTAD--QKYCGGTW-QGIIDKLDYIQGMGFTAIW 61
Query: 616 LTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLY 675
+TP + Y + H +D ++ + + + +
Sbjct: 62 ITPVTAQLPQTTAYGDAYHGYWQQDIYSLNEN-------YGTADDLKALSSALHERGMYL 114
Query: 676 CHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHS 735
+ A SV + S + + + + L + +
Sbjct: 115 MVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLP 174
Query: 736 SNKHDWFIKSAQKID----PYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVV 791
+ + D +NY + ++ + W N +
Sbjct: 175 DLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAG---------- 224
Query: 792 QSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-GATSNAKDLENVVN 850
+ I E Y D + + Y ++N F + + DL N++N
Sbjct: 225 ------VYCIGEVLDGDPAYTCPYQNVMDGV-LNYPIYYPLLNAFKSTSGSMDDLYNMIN 277
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRY-SPDLVDAMNMLTLLLPGTAVTFAGDELGME 908
P V H R A+ L + +L G + +AG E
Sbjct: 278 TVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYA 336
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Score = 40.0 bits (92), Expect = 0.001
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKN 56
W++ IY +L F ++ +
Sbjct: 5 DWRSQSIYFLLTDRFARTDGSTTATCNTAD 34
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Score = 110 bits (274), Expect = 3e-26
Identities = 61/452 (13%), Positives = 128/452 (28%), Gaps = 80/452 (17%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLG--LGIIEKIDYLKELG 610
W K+ + YQI F + + ND G L + G G+I+ +D+L +LG
Sbjct: 5 AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLG 64
Query: 611 VETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNR 670
V ++ TP + + YD ++ ++ FG + + R
Sbjct: 65 VNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKK-------------LVDLCHER 110
Query: 671 SHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEF 730
++ V N + +
Sbjct: 111 GIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPL 170
Query: 731 VPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDV 790
+P ++ D + + + DG + + R V ++ D
Sbjct: 171 MPKLNTEHPDVKEYLLKAAEYWIRET-GIDGWRLD-VANEVSHQFWREFRRVVKQANPDA 228
Query: 791 VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVN 850
++ S + ++ + T+ +++ I A + L +
Sbjct: 229 ------YILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLA 282
Query: 851 AYLKSLPSGKWSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAVTFAGDELGME 908
Y + ++ H R+ T+ D + + GT + GDE+G++
Sbjct: 283 GYPRQASE--VMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFGTPCIYYGDEVGLD 340
Query: 909 SPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTL 968
DP G R +W++ ++
Sbjct: 341 -------GGHDP----------------GCRKCMEWDETKHDK----------------- 360
Query: 969 NAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
++ Y+ + LR A+R G
Sbjct: 361 ----------DLFAFYQTVIRLRQAHAALRTG 382
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Score = 108 bits (270), Expect = 1e-25
Identities = 55/379 (14%), Positives = 93/379 (24%), Gaps = 30/379 (7%)
Query: 547 SSVRCNQKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGL-GIIEKI 603
S + + VIYQI+ F D N N+ GDL GII KI
Sbjct: 2 SDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKI 61
Query: 604 D--YLKELGVETLWLTP------------FYSGPNGDIGYDISNHTEVGKDFGTMEDFDE 649
+ YL +GV +W+ + G GY + FG+ DF
Sbjct: 62 NDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQN 121
Query: 650 LVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRA 709
L+ + ++ + N +G
Sbjct: 122 LIN-------------TAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGY 168
Query: 710 GNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTP 769
N + E + + ID Y + G G
Sbjct: 169 TNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIR 228
Query: 770 PNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVN 829
+ KH+ ++ + + +G +
Sbjct: 229 LDAVKHMPFGWQKNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQ 288
Query: 830 YEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNML 889
T L++++ + + H + R S V+
Sbjct: 289 KVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDMDRFYNGGSTRPVEQALAF 348
Query: 890 TLLLPGTAVTFAGDELGME 908
TL G + G E M
Sbjct: 349 TLTSRGVPAIYYGTEQYMT 367
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Score = 40.5 bits (93), Expect = 0.001
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 18 SSVRCNQKEWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRK 59
S + + VIYQI+ F D N N+ GDL
Sbjct: 2 SDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTS 45
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Score = 107 bits (268), Expect = 3e-25
Identities = 86/480 (17%), Positives = 147/480 (30%), Gaps = 87/480 (18%)
Query: 555 EWWKNTVIYQILVPSFKDSN--NDGIGDLRGKNVRKRYLELTLGL--------------- 597
+W KN V+YQI F + + ND N +
Sbjct: 6 DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 65
Query: 598 ----GIIEKIDYLKE-LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVK 652
GI +K+ Y+K+ LG L+L P + P + YD ++ V FG L+
Sbjct: 66 GDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTLIN 124
Query: 653 LVHSKGKQ-KISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN 711
+HS K +H H + + F+ Y + +
Sbjct: 125 DIHSTANGPKGYLILDGVFNHTGDSHPWF--DKYNNFSSQGAYESQSSPWYNYYTFYTWP 182
Query: 712 QNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPN 771
+ A + + K+ + S K Y V L+ N
Sbjct: 183 DSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDAN 242
Query: 772 NWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYY---GTGDTQGTHLSV 828
++T+ ++ ++ V+ II E + + A+ + G V
Sbjct: 243 GNNGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGNANPWTAQGNQWDAATNFDGFTQPV 302
Query: 829 NYEIMNKFG----ATSNAKDLENVVNAYLKSLPSGKWSSWM--VGGHSITRIATRYSPDL 882
+ I K A+ + ++ + + P+ S M + H ITR ATR DL
Sbjct: 303 SEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMMNFLSNHDITRFATRSGGDL 362
Query: 883 VDAMNMLTLLL--PGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRV 940
L + GT + GDE GM+ DP+ +R
Sbjct: 363 WKTYLALIFQMTYVGTPTIYYGDEYGMQ-------GGADPD----------------NRR 399
Query: 941 PFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
F W+ + S ++ + L T+R A+R G
Sbjct: 400 SFDWSQATPSN---------------------------SAVALTQKLITIRNQYPALRTG 432
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 105 bits (261), Expect = 1e-24
Identities = 63/361 (17%), Positives = 117/361 (32%), Gaps = 32/361 (8%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGI---GDLRGKNVRKRYLELTLG--LGIIEKIDYLKEL 609
EW K VIYQI F + + + K+ R R+ G G+I+++ YL+EL
Sbjct: 6 EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEEL 65
Query: 610 GVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKN 669
GV L+ TP ++ P YD +++ + FG + F LV H
Sbjct: 66 GVTALYFTPIFASP-SHHKYDTADYLAIDPQFGDLPTFRRLVDEAH-------------R 111
Query: 670 RSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVE 729
R ++ FA V + + + S + + V
Sbjct: 112 RGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVP 171
Query: 730 FVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKD 789
+P + + + + +++ G G + ++ R
Sbjct: 172 AMPKLRTENPEVK----EYLFDVARFWME----QGIDGWRLDVANEVDHAFWREFRRLVK 223
Query: 790 VVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVV 849
+ LI+ I S L ++ + + + + A +L
Sbjct: 224 SLNPDALIVGEIWHDASGWLMGD-QFDSVMNYLFRESVIRFFATGEIHAERFDAELTRAR 282
Query: 850 NAYLKSLPSGKWSSWMVGGHSITRIATRYSPD--LVDAMNMLTLLLPGTAVTFAGDELGM 907
Y + G W ++ H R T + + + GT + + GDE+GM
Sbjct: 283 MLYPEQAAQGLW--NLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLGTPLIYYGDEIGM 340
Query: 908 E 908
Sbjct: 341 A 341
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Score = 39.3 bits (90), Expect = 0.002
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGK 55
EW K VIYQI F + + +
Sbjct: 6 EWAKEAVIYQIFPERFANGDPSNDPPGTEQ 35
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 106 bits (265), Expect = 2e-24
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 555 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETL 614
+W K +V+Y L + N+ G G +V T ++ + ++K LG + +
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF-FKMMLLLPFVKSLGADAI 137
Query: 615 WLTPFY------SGPNGDIGYDISN--------HTEVGKDFGTMEDFDELVKLVHSKG 658
+L P + Y + N H + + F E+F V+ H G
Sbjct: 138 YLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 56.6 bits (135), Expect = 1e-08
Identities = 23/264 (8%), Positives = 50/264 (18%), Gaps = 32/264 (12%)
Query: 732 PNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVV 791
P S D D N + + ++ D+
Sbjct: 328 PEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMG 387
Query: 792 QSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK-FGATSNAKDLENVVN 850
+ P L+ + + + + G++ +
Sbjct: 388 HALPKELLDLIIKNVKEYDPAFVMIAEELDMEKDKASKEAGYDVILGSSWYFAGRVEEIG 447
Query: 851 AYLKSLPSGKWSSW-MVGGHSITRIATRYSPDLVDAMNMLTLLL--PGTAVTFAGDELGM 907
V RIATR + + G E+G
Sbjct: 448 KLPDIAEELVLPFLASVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNTGQEIGE 507
Query: 908 ESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWT 967
+ P+ + + S + +
Sbjct: 508 KQPM---------------------------NLGLDTDPNLRKVLSPTDEFFGKLAFFDH 540
Query: 968 LNAQAEKKTKPSHYSVYKDLTTLR 991
+ + + K L +R
Sbjct: 541 YVLHWDSPDR-GVLNFIKKLIKVR 563
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 47.7 bits (112), Expect = 6e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 26 EWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTL 66
+W K +V+Y L + N+ G G +V T
Sbjct: 79 DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF 119
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 103 bits (258), Expect = 3e-24
Identities = 51/364 (14%), Positives = 93/364 (25%), Gaps = 43/364 (11%)
Query: 598 GIIEKIDYLKELGVETLWLTPFY-SGPNGDIGYDISN---------HTEVGKDFGTMEDF 647
+ + + L LG+ LWL P Y D+GY + + V +GT +
Sbjct: 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQY 84
Query: 648 DELVKLVHSKGKQKISQ---KQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704
+ ++ H+ G Q + + I Y +
Sbjct: 85 LQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDF 144
Query: 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG 764
+ H G+ + ++D Y + +
Sbjct: 145 PGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADL 204
Query: 765 KPGTPPNNWKHIN---------------------ITSREVMRSQKDVVQSFPLILMIITE 803
P + + I V L + E
Sbjct: 205 DMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKPLFTVGE 264
Query: 804 AYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSS 863
+S + K+ Y T GT + + NKF S + ++ +L + +
Sbjct: 265 YWSYDINKLHNYI--MKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQPTL 322
Query: 864 WM--VGGHSITRIATRYSPD----LVDAMNMLTLLLPGTAVTFAGDELGME-SPILRYED 916
+ V H S A + G F GD G+ I +
Sbjct: 323 AVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKS 382
Query: 917 QRDP 920
+ DP
Sbjct: 383 KIDP 386
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Score = 103 bits (257), Expect = 7e-24
Identities = 48/448 (10%), Positives = 114/448 (25%), Gaps = 90/448 (20%)
Query: 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLT 617
KN V ++ D G G ++ + + + + + + +
Sbjct: 2 KNKVQLI----TYADRL--GDGTIKS---------------MTDILRTRFDGVYDGVHIL 40
Query: 618 PFY-SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676
PF+ D G+D +HT+V + G+ +D EL K + ++ +++ Q
Sbjct: 41 PFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSKTHNIMVDAIVNHMSWESKQFQDVL 100
Query: 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSS 736
+ F S + AG LV
Sbjct: 101 AKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQ 160
Query: 737 NKHDWFIKSAQKIDPYTNYYVWKDGLNGKPG-------TPPNNWKHINITSREVMRSQKD 789
D + + ++ + + +++ ++
Sbjct: 161 VDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLRE 220
Query: 790 VVQSFPLILMIITEAYSPSLEKVAK----------------------------------- 814
L ++I +Y ++A
Sbjct: 221 EGVKRGLEILIEVHSYYKKQVEIASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRPN 280
Query: 815 ----YYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMV--GG 868
T D G + ++ +D++N+VN + ++
Sbjct: 281 NAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASN 340
Query: 869 HSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEG 922
+ ++ + Y L A + LPG + L ++ + +
Sbjct: 341 LDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNG-- 398
Query: 923 YIFGKDNYLKVCRDGSRVPFQWNDQENA 950
RD +R + + +
Sbjct: 399 ------------RDINRHYYSTAEIDEN 414
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Score = 100 bits (248), Expect = 6e-23
Identities = 52/362 (14%), Positives = 106/362 (29%), Gaps = 39/362 (10%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
W+ IY +L F ++N N + Y + GII+ +DY++ +G +W
Sbjct: 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGN--EIYCGGSW-QGIIDHLDYIEGMGFTAIW 61
Query: 616 LTPFYSGPNGD-------IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668
++P D GY +V +FGT ++ L +H
Sbjct: 62 ISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH----------ARG 111
Query: 669 NRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILV 728
+M +SV+ + + + + +E +V
Sbjct: 112 MYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIV 171
Query: 729 EFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQK 788
++ I D +NY V ++ P+ + N S +
Sbjct: 172 SLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEI 231
Query: 789 DVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF-GATSNAKDLEN 847
D Y + + ++++ F ++ + +L N
Sbjct: 232 DNGN-----------------PASDCPYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYN 274
Query: 848 VVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVTFAGDELG 906
++ + + H R A S + L G + +AG+E
Sbjct: 275 MIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFLSDGIPIVYAGEEQH 334
Query: 907 ME 908
Sbjct: 335 YA 336
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Score = 39.3 bits (90), Expect = 0.002
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGKN 56
W+ IY +L F ++N N
Sbjct: 5 SWRTQSIYFLLTDRFGRTDNSTTATCNTGN 34
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Score = 97.4 bits (241), Expect = 5e-22
Identities = 48/369 (13%), Positives = 93/369 (25%), Gaps = 44/369 (11%)
Query: 556 WWKNTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEK-IDYLKELGVET 613
+ IY++ + S++ ++N+ R + ++ + Y K +G
Sbjct: 13 FDAPISIYEVHLGSWRRHTDNNFWLSYRE---------------LADQLVPYAKWMGFTH 57
Query: 614 LWLTPFY-SGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
L L P +G GY + + FGT +DF + H+ G I
Sbjct: 58 LELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVI--------LD 109
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ H +F ++Y + +Q+W N + + ++
Sbjct: 110 WVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIE 169
Query: 733 NHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQ 792
D A Y +Y + P I + + +
Sbjct: 170 RF---GIDALRVDAVASMIYRDY--SRKEGEWIPNEFGGRENLEAIEFLRNTN--RILGE 222
Query: 793 SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAY 852
+ + E+ + G + +
Sbjct: 223 QVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT 282
Query: 853 LKSLPSGK-----WSSWMVGGHSITRIATRYSPDLVD------AMNMLTLLLPGTAVTFA 901
L + S H I R D A PG + F
Sbjct: 283 FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFM 342
Query: 902 GDELGMESP 910
G+E
Sbjct: 343 GNEFAQGRE 351
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Score = 97.0 bits (240), Expect = 7e-22
Identities = 38/350 (10%), Positives = 83/350 (23%), Gaps = 40/350 (11%)
Query: 598 GIIEKIDYLKELGVETLWLTPFY-SGPNGDIGYDISN---------HTEVGKDFGTMEDF 647
+ ++L ++G+ +W+ P Y D GY + V +GT +
Sbjct: 22 RLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSEL 81
Query: 648 DELVKLVHSKGKQKISQ---KQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704
+ + +HS+ Q Y +
Sbjct: 82 QDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRF 141
Query: 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTN--YYVWKDGL 762
+ H G + ++ Y+ +
Sbjct: 142 PGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADV 201
Query: 763 NGKPGTPPNNWKHI-------------------NITSREVMRSQKDVVQSFPLILMIITE 803
+ K +I + + V Q+ + + E
Sbjct: 202 DYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRDWVQAVRQATGKEMFTVAE 261
Query: 804 AYSPSLEKVAKYYGTGDTQGTHL-SVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWS 862
+ + K+ Y + + + + D+ ++N + S K
Sbjct: 262 YWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKSV 321
Query: 863 SWMVGGHSITRIATRYSPD----LVDAMNMLTLLLPGTAVTFAGDELGME 908
++ V H + S A + G F GD G +
Sbjct: 322 TF-VDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTK 370
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Score = 98.9 bits (245), Expect = 7e-22
Identities = 72/526 (13%), Positives = 135/526 (25%), Gaps = 132/526 (25%)
Query: 550 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLK 607
R N +W V V F GDL+G + +KI Y +
Sbjct: 86 RENNPDWILSNKQVGGVCYVDLF-------AGDLKG---------------LKDKIPYFQ 123
Query: 608 ELGVETLWLTPFYSGPNG--DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665
ELG+ L L P + P G D GY +S++ +V GT+ D E++ +H G
Sbjct: 124 ELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGI-SAVVD 182
Query: 666 QTKNRSHQLYCHMYMYAICADKFAIHSVYL---NPVYAGSGNQNWRAGNQNRAESMEHRA 722
N H H + A + Y + ++ R ++ +
Sbjct: 183 FIFN--HTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQL 240
Query: 723 GMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSRE 782
V N ++ + ++ G++ TS E
Sbjct: 241 EDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCE 300
Query: 783 VMRSQKDVVQSFPLI-------LMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK 835
+ ++++F + + +EA ++V +Y G + Q + + ++
Sbjct: 301 NLPQAHALIRAFNAVMRIAAPAVFFKSEAIVHP-DQVVQYIGQDECQIGYNPLQMALLWN 359
Query: 836 FGATSNAKDLENVVNAYLKSLPSGKW---------------------------------- 861
AT L + W
Sbjct: 360 TLATREVNLLHQALTYRHNLPEHTAWVNYVRSHDDIGWTFADEDAAYLGISGYDHRQFLN 419
Query: 862 --SSWMVGGHSITRIATRYSPDLVDAMN----------------------MLTLLL---P 894
G + +Y+P D +L +
Sbjct: 420 RFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTG 479
Query: 895 GTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSK 954
G + + GDE+G + +D N R R +
Sbjct: 480 GLPLIYLGDEVGTLNDDDWSQD-----------SNKSDDSRWAHRPRYNEALYA------ 522
Query: 955 AKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
Y + + +R ++ G
Sbjct: 523 --------------QRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGG 554
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Score = 94.4 bits (233), Expect = 5e-21
Identities = 39/349 (11%), Positives = 76/349 (21%), Gaps = 40/349 (11%)
Query: 598 GIIEKIDYLKELGVETLWLTPFY-SGPNGDIGYDISNH---------TEVGKDFGTMEDF 647
+ + L + G+ +W+ P Y D+GY + V +GT
Sbjct: 24 RLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQL 83
Query: 648 DELVKLVHSKGKQKISQ---KQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704
+ + + S I Y + G
Sbjct: 84 ERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDF 143
Query: 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG 764
+ H G+ + NH + + Y+ ++
Sbjct: 144 SGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDF 203
Query: 765 KPGTPPNNWKHIN-------------------ITSREVMRSQKDVVQSFPLILMIITEAY 805
+ K I + L ++ E +
Sbjct: 204 SHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQDLFVVGEYW 263
Query: 806 SPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWM 865
+ + Y + + + F S ++ N SL +
Sbjct: 264 KDDVGALEFYL--DEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHAV 321
Query: 866 --VGGHSITRIATRYSPD----LVDAMNMLTLLLPGTAVTFAGDELGME 908
V H + S A + G F GD G+
Sbjct: 322 TFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIP 370
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 95.5 bits (236), Expect = 5e-21
Identities = 61/519 (11%), Positives = 123/519 (23%), Gaps = 128/519 (24%)
Query: 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLW 615
K+ VIY++ V F + + RG T G K YL LGV +
Sbjct: 13 AQKDDVIYEVHVRGFTEQDTSIPAQYRG----------TY-YGAGLKASYLASLGVTAVE 61
Query: 616 LTPFYSGPNGDI-------------GYDISNHTEV-------GKDFGTMEDFDELVKLVH 655
P N GY N+ G +F +V+ H
Sbjct: 62 FLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFH 121
Query: 656 S---------------------------------KGKQKISQKQTKNRSHQLYCHM-YMY 681
+ +G + + + + Y +
Sbjct: 122 NAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGA 181
Query: 682 AICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDW 741
++ ++ + + + A + + PN + +++
Sbjct: 182 NFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNF 241
Query: 742 FIKSAQKIDPYTNYYVWKDGLNGKPGTP------------------PNNWKHINITSREV 783
+ G G P W N R+
Sbjct: 242 DAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDS 301
Query: 784 MRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAK 843
+R ++ + S + + +S S + + V+ + K + N
Sbjct: 302 LRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGA 361
Query: 844 DLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGD 903
+ + SW G + T A +L GT + GD
Sbjct: 362 NNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAV-DQRRAARTGMAFEMLSAGTPLMQGGD 420
Query: 904 ELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHP 963
E + +N + + + + W ++
Sbjct: 421 EYLRT---------------LQCNNNAYNLDSSANWLTYSWTTDQS-------------- 451
Query: 964 NYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002
+ Y+ + L R A+R +
Sbjct: 452 ---------------NFYTFAQRLIAFRKAHPALRPSSW 475
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Score = 43.1 bits (100), Expect = 2e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 27 WWKNTVIYQILVPSFKDSNNDGIGDLRGK 55
K+ VIY++ V F + + RG
Sbjct: 13 AQKDDVIYEVHVRGFTEQDTSIPAQYRGT 41
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Score = 94.9 bits (234), Expect = 1e-20
Identities = 45/412 (10%), Positives = 106/412 (25%), Gaps = 29/412 (7%)
Query: 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELT-LGLGIIEKIDYLKELGVE 612
K I++ + + +LRGK YL LT +++ + L GV
Sbjct: 16 KADLAKMTIHESHIRDLSAWDQTVPAELRGK-----YLALTAQESNMVQHLKQLSASGVT 70
Query: 613 TLWLTPF--YSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ---T 667
+ L P + N + + + +
Sbjct: 71 HIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLK 130
Query: 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPV-------YAGSGNQNWRAGNQNRA--ESM 718
+N S + + A + + Y +P + + + R +++
Sbjct: 131 QNDSKDNPQVQALNTLVAQTDSYNWGY-DPFHYTVPEGSYATDPEGTARIKEFRTMIQAI 189
Query: 719 EHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINI 778
+ GM ++++ V NH++ S Y + + +
Sbjct: 190 KQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE-----TTGSVESATCCSD 244
Query: 779 TSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA 838
++ E K + S + + + + + FG
Sbjct: 245 SAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGE 304
Query: 839 TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAV 898
++ + A +L ++ R + N G
Sbjct: 305 GWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAG--- 361
Query: 899 TFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENA 950
+ + R+ G +++ + +DG+ D A
Sbjct: 362 VLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVKRGSEIDYNGA 413
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Score = 72.2 bits (175), Expect = 2e-13
Identities = 37/419 (8%), Positives = 87/419 (20%), Gaps = 57/419 (13%)
Query: 628 GYDISNHTEVGKDFGTMED-------FDELVKLVHSKGKQKISQKQT---KNRSHQLYCH 677
GYD ++T + T + F +++ + + N +
Sbjct: 156 GYDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRT 215
Query: 678 MYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN----------------QNRAESMEHR 721
+ I + + V + + + + + +
Sbjct: 216 SVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 275
Query: 722 AGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSR 781
+ + + + + + + + + + R
Sbjct: 276 LMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLR 335
Query: 782 EVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN---KFGA 838
+ +R L + + L + + F
Sbjct: 336 DAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVL 395
Query: 839 TSNAKDLENVVNAYLKSLPSGKWSSWM-----VGGHSITRIATRYSPDLVD--------- 884
++ P G + V H + S
Sbjct: 396 IDKDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVR 455
Query: 885 ---AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVP 941
+L G A G EL R D S
Sbjct: 456 MQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSYDSGDW----------FNRVDYSLQD 505
Query: 942 FQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000
+N ++ + A + + Y++LT LR +S +G
Sbjct: 506 NNYNVGMPRSSDDGSNYDIIARVKD-AVATPGETELKQMTAFYQELTALRKSSPLFTLG 563
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Score = 41.7 bits (96), Expect = 5e-04
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 25 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGK 55
K I++ + + +LRGK
Sbjct: 16 KADLAKMTIHESHIRDLSAWDQTVPAELRGK 46
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Score = 90.1 bits (222), Expect = 1e-19
Identities = 41/351 (11%), Positives = 80/351 (22%), Gaps = 41/351 (11%)
Query: 598 GIIEKIDYLKELGVETLWLTPFY-SGPNGDIGYDISN---------HTEVGKDFGTMEDF 647
+ LK G+ +W+ P + D+GY + V +GT
Sbjct: 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQL 81
Query: 648 DELVKLVHSKGKQKISQK---QTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704
V + + G Q + Y +
Sbjct: 82 QAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDF 141
Query: 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL-- 762
+ + H G+ N+ K K+ N
Sbjct: 142 PGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYAD 201
Query: 763 ----NGKPGTPPNNWKHINITSREVMRSQKDVVQSFP----------------LILMIIT 802
+ + NW + + + D V+ + +
Sbjct: 202 IDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTRDWINHVRSATGKNMFAVA 261
Query: 803 EAYSPSLEKVAKYYGTGDTQGTHLSVN-YEIMNKFGATSNAKDLENVVNAYLKSLPSGKW 861
E + L + Y + + V + + + D+ N+ N +
Sbjct: 262 EFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSHA 321
Query: 862 SSWMVGGHSITRIATRYSPD----LVDAMNMLTLLLPGTAVTFAGDELGME 908
++ V H S A + G F GD G+
Sbjct: 322 VTF-VDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIP 371
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 91.5 bits (227), Expect = 2e-19
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 26/179 (14%)
Query: 598 GIIEKIDYLKELGVETLWLTP-FYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHS 656
+I+ + Y K+LGV L+L+P + P + GYD+ +H+ + + G +++ L++ H+
Sbjct: 18 DVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHT 77
Query: 657 KGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAE 716
G + I D H + + ++
Sbjct: 78 IG-------------------LG---IIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTY 115
Query: 717 SMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775
KI + + + K KI + Y + P T N +
Sbjct: 116 FDFFPEDDKIRLPILGE---DLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIY 171
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 59.6 bits (144), Expect = 1e-09
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 690 IHSVYLNPVYAGSGNQNW------------RAGNQNRAESM---EHRAGMKILVEFVPNH 734
+ +YL+PV S N G + + H G+ I+ + VPNH
Sbjct: 31 VSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNH 90
Query: 735 SSNKHDWFIKS-AQKIDPYTNYYVWKD----GLNGKPGTPPNNWKHI 776
+ + K+ + YY + D + + +
Sbjct: 91 MAVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPILGEDLDTV 137
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 79.9 bits (196), Expect = 2e-16
Identities = 47/322 (14%), Positives = 86/322 (26%), Gaps = 42/322 (13%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNG--DIGYDISNH---------TEVGKDFGTMED 646
I KI E G+ +WL P G +G +GYD ++ V FG+ E+
Sbjct: 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEE 88
Query: 647 FDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQN 706
L++ H+ G K+ N H + + F + + SG
Sbjct: 89 LVRLIQTAHAYG-IKVIADVVIN-------HRAGGDLEWNPFVGDYTWTDFSKVASGKYT 140
Query: 707 WRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYY-VWKDGLNGK 765
+ + E G + +H W KS + Y +
Sbjct: 141 ANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYV 200
Query: 766 PGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTH 825
G + + E + +++ + + +
Sbjct: 201 KGYGAWVVRDWLNWWGG----------------WAVGEYWDTNVDALLSWAYESGAKVFD 244
Query: 826 LSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVDA 885
+ Y++ F + + + N + V H I +Y
Sbjct: 245 FPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKY------P 298
Query: 886 MNMLTLLLPGTAVTFAGDELGM 907
L G V F D
Sbjct: 299 AYAFILTYEGQPVIFYRDFEEW 320
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Score = 78.8 bits (193), Expect = 4e-16
Identities = 34/344 (9%), Positives = 80/344 (23%), Gaps = 57/344 (16%)
Query: 598 GIIEKIDYLKELGVETLWLTPFYSGPNGD----------IGYDISNHTEVGKDFGTMEDF 647
+ + + + G + +P G+ Y +++ + GT ++F
Sbjct: 18 TLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEF 77
Query: 648 DELVKLVHSKGKQ---KISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704
E+ G + T + + + + +
Sbjct: 78 KEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNS 137
Query: 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNG 764
+ + L + + + + +A+ I+ +
Sbjct: 138 LLGLYDWNTQNT-QVQSYLKRFLERALNDGA---DGFRFDAAKHIELPDDGSYGSQFWPN 193
Query: 765 KPGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT 824
T E S + A Y D T
Sbjct: 194 ITNTSAE---------------------------FQYGEILQDSASRDAAYANYMDV--T 224
Query: 825 HLSVNYEIMNKF-GATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLV 883
+ + I + ++ + Y + + K +W V H S +
Sbjct: 225 ASNYGHSIRSALKNRNLGVSNISH----YASDVSADKLVTW-VESHDTYANDDEESTWMS 279
Query: 884 D-----AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEG 922
D ++ T + F+ E G + Q G
Sbjct: 280 DDDIRLGWAVIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRG 323
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Score = 74.6 bits (182), Expect = 1e-14
Identities = 26/362 (7%), Positives = 70/362 (19%), Gaps = 61/362 (16%)
Query: 563 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYS 621
+I++ F + + D + ++ + G +W+ +
Sbjct: 16 DEIILQGFHWNVVREAPNDWYN--------------ILRQQAATIAADGFSAIWMPVPWR 61
Query: 622 GPNGDI---------GYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672
+ GY + +G+ + + K
Sbjct: 62 DFSSWSDGSKSGGGEGYFWHDFN-KNGRYGSDAQLRQAA--------SALGGAGVKVLYD 112
Query: 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVP 732
+ HM + N + + G +
Sbjct: 113 VVPNHM-----NRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNT-- 165
Query: 733 NHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQ 792
+ F + ++ + G P S + ++ +
Sbjct: 166 -GHPQVYGMFRDEFTNLRSQYGAGGFR--FDFVRGYAPERVNSWMTDSADNSFCVGELWK 222
Query: 793 SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAY 852
Y + + + + + + +
Sbjct: 223 GPS--------EYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHGL 274
Query: 853 LKSLPSGKWSSWM--VGGHSITRIATRYSPDLVDAMNM--------LTLLLPGTAVTFAG 902
+ + V H + A+ L PGT V +
Sbjct: 275 NGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWD 334
Query: 903 DE 904
Sbjct: 335 HM 336
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Score = 57.6 bits (138), Expect = 3e-09
Identities = 43/360 (11%), Positives = 82/360 (22%), Gaps = 53/360 (14%)
Query: 601 EKIDYLKELGVETLWLTPFYSGPNGD---IGYDISNHTEVGKDFGTMEDFDELVKLVHSK 657
E YL G + ++P G Y ++ + G F ++V +
Sbjct: 19 ECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYE-LQSRGGNRAQFIDMVNRCSAA 77
Query: 658 GKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAES 717
G L HM + P+Y+ N + +
Sbjct: 78 GVDIYVD--------TLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNSDYGN 129
Query: 718 MEHRAGMKILVEFV-PNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHI 776
+R LV + +SN I + I+ V + ++ + +
Sbjct: 130 DRYRVQNCELVGLADLDTASNYVQNTIAAY--INDLQAIGVKGFRFDASKHVAASDIQSL 187
Query: 777 NITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF 836
+ ++ E E V T + E+ N F
Sbjct: 188 --------------MAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTF 233
Query: 837 GATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD--------AMNM 888
+ L N + S + V H R + A
Sbjct: 234 -RNGSLAWLSNFGEGWGFMPSS--SAVVFVDNHDNQRGHGGAGNVITFEDGRLYDLANVF 290
Query: 889 LTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQE 948
+ G + + D P + + W +
Sbjct: 291 MLAYPYGYPKVMSSYDFHG------DTDAGGPNVPVHNN-------GNLECFASNWKCEH 337
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 54.9 bits (131), Expect = 3e-08
Identities = 33/346 (9%), Positives = 69/346 (19%), Gaps = 37/346 (10%)
Query: 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNH------TEVGKDFGTMEDFDELVKLV 654
E YL G + ++P ++ G +F ++V
Sbjct: 27 ECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRC 86
Query: 655 HSKG---------KQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705
++ G + + N + +
Sbjct: 87 NNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASG 146
Query: 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGK 765
+ N G+ L + I + V ++
Sbjct: 147 GIESYNDPYQVRDCQLVGLLDL-----ALEKDYVRSMIADYLNK--LIDIGVAGFRIDAS 199
Query: 766 PGTPPNNWKHINITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTH 825
P + K + + + I E E + G+ + T
Sbjct: 200 KHMWPGDIKAVLDKLHNLNTNWFPAGSRP----FIFQEVIDLGGEAIKSSEYFGNGRVTE 255
Query: 826 LSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSPDLVD- 884
++ S K + V H R ++
Sbjct: 256 FKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTF 315
Query: 885 --------AMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEG 922
A+ + G + + ED D G
Sbjct: 316 WDARLYKIAVGFMLAHPYGFTRVMSSYRWARNF--VNGEDVNDWIG 359
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 30/274 (10%), Positives = 74/274 (27%), Gaps = 19/274 (6%)
Query: 601 EKIDYLKELGVETLWLTPFYSGPNGDI-----GYDISNHTEVGKDFGTMEDFDELVKLVH 655
E +L+ G + ++P D Y ++ + G F ++ + +
Sbjct: 27 ECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYI-INTRSGDESAFTDMTRRCN 85
Query: 656 SKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715
+ +H + + + + P +G + N A
Sbjct: 86 ---DAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDA 142
Query: 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH 775
+++ + + + + + ++ + V ++ P +
Sbjct: 143 DNVRNCE-----LVGLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSV 197
Query: 776 INITSREVMRSQKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK 835
I + + + P I E E ++K TG + N
Sbjct: 198 IFSGLKNLNTDYGFADGARP---FIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNA 254
Query: 836 FGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGH 869
F + K+L N + + V H
Sbjct: 255 FQGGNQLKNLANWGPEWGLLEGL--DAVVFVDNH 286
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1h3ga3 | 422 | Cyclomaltodextrinase, central domain {Flavobacteri | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 100.0 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1ji1a3 | 432 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 99.97 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 99.97 | |
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 99.97 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 99.97 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 99.97 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 99.96 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 99.96 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 99.96 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 99.96 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 99.95 | |
| d1ua7a2 | 344 | Bacterial alpha-amylase {Bacillus subtilis [TaxId: | 99.95 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 99.95 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 99.94 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 99.94 | |
| d1r7aa2 | 434 | Sucrose phosphorylase {Bifidobacterium adolescenti | 99.94 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 99.94 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 99.93 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 99.91 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 99.9 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 99.88 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 99.87 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.8 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 99.74 | |
| d1uoka1 | 79 | Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 139 | 97.62 | |
| d1wzla2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 97.51 | |
| d1m53a1 | 78 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 97.47 | |
| d1j0ha2 | 83 | Neopullulanase {Bacillus stearothermophilus [TaxId | 97.38 | |
| d1ea9c2 | 80 | Maltogenic amylase {Bacillus sp., cyclomaltodextri | 97.21 | |
| d1ji1a2 | 83 | Maltogenic amylase {Thermoactinomyces vulgaris, TV | 96.79 | |
| d1m7xa2 | 106 | 1,4-alpha-glucan branching enzyme {Escherichia col | 96.25 | |
| d1g5aa1 | 74 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 94.81 | |
| d3bmva3 | 89 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 94.3 | |
| d1h3ga2 | 83 | Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId | 93.67 | |
| d1cxla3 | 90 | Cyclodextrin glycosyltransferase {Bacillus circula | 93.66 | |
| d1cyga3 | 89 | Cyclodextrin glycosyltransferase {Bacillus stearot | 93.57 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 92.7 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 91.03 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 90.94 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 90.65 | |
| d1qnra_ | 344 | Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | 90.59 | |
| d1zy9a2 | 348 | Alpha-galactosidase GalA catalytic domain {Thermot | 90.41 | |
| d1wkya2 | 297 | Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 | 89.77 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 88.67 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 88.55 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 88.4 | |
| d1wzaa1 | 79 | Bacterial alpha-Amylase {Halothermothrix orenii [T | 88.11 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 87.73 | |
| d1vjza_ | 325 | Endoglucanase homologue TM1752 {Thermotoga maritim | 86.72 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 86.58 | |
| d1ceoa_ | 340 | Endoglucanase CelC {Clostridium thermocellum [TaxI | 84.61 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 84.19 | |
| d1foba_ | 334 | Beta-1,4-galactanase {Fungus (Aspergillus aculeatu | 84.07 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 83.84 | |
| d1bqca_ | 302 | Beta-mannanase {Thermomonospora fusca [TaxId: 2021 | 83.27 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 82.98 | |
| d1nowa1 | 353 | beta-hexosaminidase B {Human (Homo sapiens) [TaxId | 82.88 | |
| d2f2ha4 | 338 | Putative glucosidase YicI, domain 2 {Escherichia c | 81.35 | |
| d1h1na_ | 305 | Endocellulase EngI {Thermoascus aurantiacus [TaxId | 81.21 |
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=1.9e-57 Score=537.34 Aligned_cols=362 Identities=33% Similarity=0.671 Sum_probs=290.8
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.|+||+++|||||||++|++++++++|||+ ||++||||||+||||+||||||++++..+|||++.
T Consensus 2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~---------------Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~ 66 (478)
T d1m53a2 2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIR---------------GIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDIS 66 (478)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCS
T ss_pred CCcccccCeEEEEecchhcCCCCCCccCHH---------------HHHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCcc
Confidence 489999999999999999999999999999 99999999999999999999999999888999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||++|||+|||++|||+||++|
T Consensus 67 d~~~vd~~~Gt~~df~~Lv~~a---------------------------------------------------------- 88 (478)
T d1m53a2 67 NYRQIMKEYGTMEDFDSLVAEM---------------------------------------------------------- 88 (478)
T ss_dssp EEEEECGGGCCHHHHHHHHHHH----------------------------------------------------------
T ss_pred CCCCcCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCCCCCCCCCc-----------------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKPGTPPNNWK----------------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p~~~~~~W~----------------- 774 (1065)
|++||+||||+|+||++.+|+||...... ..++.++|.+.++.... ++.+|.
T Consensus 89 -------H~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (478)
T d1m53a2 89 -------KKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQ---PPNNYPSFFGGSAWQKDAKSGQY 158 (478)
T ss_dssp -------HHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSS---CSSCCBCTTSSBSEEECTTTCCE
T ss_pred -------HHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCC---CCccccccCCCCccccccccCcc
Confidence 99999999999999999999999887654 66788888877654221 111110
Q ss_pred ----------cccCCCHHHHHHHHHHHHh----------------c----------------------------------
Q psy15051 775 ----------HINITSREVMRSQKDVVQS----------------F---------------------------------- 794 (1065)
Q Consensus 775 ----------~ln~~n~~v~~~l~~~lk~----------------~---------------------------------- 794 (1065)
.+|+.+++|+++|.++++. +
T Consensus 159 ~~~~~~~~~~dln~~~~~V~~~i~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (478)
T d1m53a2 159 YLHYFARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEM 238 (478)
T ss_dssp EECSSCTTCCBBCTTSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHH
T ss_pred cccCcCCCCCcccchhHHHHHHHHHHHHHHHhcCCceeccccceeecccccccccchhhhhccchhhccchhHHHHHHHH
Confidence 0899999999999998321 0
Q ss_pred ------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHh--------hcCCChHHHHHHHHHHhhcCCCCC
Q psy15051 795 ------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKF--------GATSNAKDLENVVNAYLKSLPSGK 860 (1065)
Q Consensus 795 ------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~~~~~~~ 860 (1065)
.++.+++||.+.........+.... ...++..+++.+.... ........+...+.......+...
T Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (478)
T d1m53a2 239 NRKVLSRYDVATAGEIFGVPLDRSSQFFDRR-RHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGKYG 317 (478)
T ss_dssp HHHTGGGSCCEEEEECTTCCGGGTHHHHCGG-GCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhhccccceeeeecCCCHHHHHhhhccc-CCccccccchhhhhhhhhhhhhhccccccHHHHHHHHHHHHhhhcccc
Confidence 1257889999987555444444322 2344555555544322 123456677777777666667777
Q ss_pred cccccccCCChhhHhhhcCH-------HHHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCcccccccc-----
Q psy15051 861 WSSWMVGGHSITRIATRYSP-------DLVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGK----- 927 (1065)
Q Consensus 861 ~~~~flenHD~~Rl~s~~~~-------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~----- 927 (1065)
+..++++|||+.|+.+.++. .+.+++++++||+||+||||||||+||.+.. ...++..|++..+...
T Consensus 318 ~~~~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~~ 397 (478)
T d1m53a2 318 WNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQS 397 (478)
T ss_dssp CBEECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGGGCCCHHHHHHHHHHTTT
T ss_pred cceeeccCCCCcccccccCCchHHHHHHHHHHHHHHHHhCCCCCEEecccccCCcCCCcccccccCChhhhhhhHHHHhc
Confidence 77889999999999998763 3577888999999999999999999998754 2233444544222111
Q ss_pred ---------ccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 928 ---------DNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 928 ---------~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
+.....+||++|.||+|++..++|||.++||+++++++..+|++.|...+.+++++||+||+|||++|||.
T Consensus 398 ~~~~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~GFs~~~~wl~~~~~~~~~nv~~q~~~~~S~l~~yr~Li~lRk~~paL~ 477 (478)
T d1m53a2 398 GKVTATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALV 477 (478)
T ss_dssp TSSCHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHHHHHHHHHHHHHHCHHHH
T ss_pred ccCchHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCcCCcCCcchhhhhHHHHhhCcccHHHHHHHHHHHHhhCchhc
Confidence 12234568999999999999999999999999999999999999999999999999999999999999984
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=1.9e-56 Score=528.88 Aligned_cols=362 Identities=35% Similarity=0.694 Sum_probs=289.9
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDIS 632 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~ 632 (1065)
.++||+++|||||||++|++++++++|||+ ||++||||||+||||+||||||+++++.+|||+++
T Consensus 2 ~~~W~~~~viYei~~~~F~d~~~~~~Gd~~---------------gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~ 66 (479)
T d1uoka2 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLR---------------GIISKLDYLKELGIDVIWLSPVYESPNDDNGYDIS 66 (479)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHH---------------HHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCS
T ss_pred CchhhccCeEEEEEcchhcCCCCCCCcCHH---------------HHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCcc
Confidence 368999999999999999999999999999 99999999999999999999999999989999999
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 633 NHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 633 dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
||++|||+|||++|||+||++|
T Consensus 67 d~~~vd~~~Gt~~df~~Lv~~a---------------------------------------------------------- 88 (479)
T d1uoka2 67 DYCKIMNEFGTMEDWDELLHEM---------------------------------------------------------- 88 (479)
T ss_dssp EEEEECGGGCCHHHHHHHHHHH----------------------------------------------------------
T ss_pred ccCCcCcccCCHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999999999999999999
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCCCCCCCCCc-----------------
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKPGTPPNNWK----------------- 774 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p~~~~~~W~----------------- 774 (1065)
|++||+||||+|+||++.+|+||.+.... ..++.++|+|....++. .+..|.
T Consensus 89 -------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
T d1uoka2 89 -------HERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGK---EPNNWGAAFSGSAWQYDEMTDEY 158 (479)
T ss_dssp -------HHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSS---CSSCBBCTTSSBSEEEETTTTEE
T ss_pred -------HHCCCEEEecccccccccccchhhhhhhccCCccccceeccccccCc---CcCCccccCCCCccccccccCcc
Confidence 99999999999999999999999987764 56778888887654433 111111
Q ss_pred ----------cccCCCHHHHHHHHHHHHh----------------c----------------------------------
Q psy15051 775 ----------HINITSREVMRSQKDVVQS----------------F---------------------------------- 794 (1065)
Q Consensus 775 ----------~ln~~n~~v~~~l~~~lk~----------------~---------------------------------- 794 (1065)
.+|+.+|+|+++|.++++. +
T Consensus 159 ~~~~~~~~~~dln~~~~~v~~~i~~~~~~W~e~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
T d1uoka2 159 YLHLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLH 238 (479)
T ss_dssp EECSSCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHH
T ss_pred eecccCCCccccccCCHHHHHHHHHHHHHHHHcCCCCcccccceeeeccccCcccccccccccccchhhccChhHHHHHH
Confidence 0899999999999998332 0
Q ss_pred --------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhh--------cCCChHHHHHHHHHHhhcCCC
Q psy15051 795 --------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG--------ATSNAKDLENVVNAYLKSLPS 858 (1065)
Q Consensus 795 --------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~ 858 (1065)
.++..+++|.+.........|.+. ....+++.+++....... .......+...+.......+.
T Consensus 239 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
T d1uoka2 239 EMNEEVLSHYDIMTVGEMPGVTTEEAKLYTGE-ERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEH 317 (479)
T ss_dssp HHHHHTGGGSCCEEEEECTTCCHHHHHHHHCG-GGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCccceeecccCCchHhhhhhccC-CCcccccccCcccchhhhhccCcccccchhhhHHhhhHHHHhhhccc
Confidence 114567888877655555544432 223344444443332210 122345555556666666666
Q ss_pred CCcccccccCCChhhHhhhcCH------HHHHHHHHHHHhCCCeEEEEcccccCccCCC-CccCCCCCcccccccccc--
Q psy15051 859 GKWSSWMVGGHSITRIATRYSP------DLVDAMNMLTLLLPGTAVTFAGDELGMESPI-LRYEDQRDPEGYIFGKDN-- 929 (1065)
Q Consensus 859 ~~~~~~flenHD~~Rl~s~~~~------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~-~~~~~~~Dp~~~~~~~~~-- 929 (1065)
.....+|++|||+.|+.++++. ++.+++++++||+||+||||||||+|+.+.. ...+++.||...+..++.
T Consensus 318 ~~~~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~ 397 (479)
T d1uoka2 318 TGWNSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVM 397 (479)
T ss_dssp SSCCEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHH
T ss_pred ccccceecccccccccccccCccHHHHHHHHHHHHHHHHhCCCCcccccccccCCcCCCCCChHhhcCHHhhhhhHHHHH
Confidence 6666679999999999998763 4678899999999999999999999999854 345566777655444322
Q ss_pred ------------ccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc
Q psy15051 930 ------------YLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997 (1065)
Q Consensus 930 ------------~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL 997 (1065)
....+||++|.||+|++..++|||.+++|+|++++|.+.|++.|...+.+++++||+||+|||++|||
T Consensus 398 ~~~~~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~gFs~~~~w~~~~~~~~~~nv~~q~~~~~S~l~~~r~Li~lRk~~pal 477 (479)
T d1uoka2 398 ERGEDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIV 477 (479)
T ss_dssp TSCCCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHH
T ss_pred hccCCHHHHHhhhhccCCCCCCCCcCCCCCCCCCCCCCCcCCCCCcchhhhcHHHHhhCcccHHHHHHHHHHHHccCCcc
Confidence 23347899999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy15051 998 R 998 (1065)
Q Consensus 998 ~ 998 (1065)
.
T Consensus 478 ~ 478 (479)
T d1uoka2 478 V 478 (479)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-51 Score=473.28 Aligned_cols=332 Identities=23% Similarity=0.425 Sum_probs=259.8
Q ss_pred ceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC
Q psy15051 560 TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK 639 (1065)
Q Consensus 560 ~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp 639 (1065)
+|||||||++|+++++||+|||+ ||++||||||+||||+||||||+++.+. |||+++||++|||
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~---------------gi~~kLdyl~~LGv~~I~l~Pi~~~~~~-~GY~~~d~~~vd~ 64 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFR---------------GLKNAVSYLKELGIDFVWLMPVFSSISF-HGYDVVDFYSFKA 64 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHH---------------HHHHTHHHHHHTTCSEEEECCCEECSSS-SCCSCSEEEEECG
T ss_pred CEEEEEccccccCCCCCCccCHH---------------HHHHhhHHHHHcCCCEEEECCCCCCCCC-CCCCccCCCCcCc
Confidence 58999999999999999999999 9999999999999999999999998765 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhh
Q psy15051 640 DFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESME 719 (1065)
Q Consensus 640 ~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1065)
+|||++|||+||++|
T Consensus 65 ~~Gt~~d~~~lv~~~----------------------------------------------------------------- 79 (391)
T d1lwha2 65 EYGSEREFKEMIEAF----------------------------------------------------------------- 79 (391)
T ss_dssp GGCCHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999999999999
Q ss_pred hhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC-CCCCCC--CC-------------CCCc-----cccC
Q psy15051 720 HRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL-NGKPGT--PP-------------NNWK-----HINI 778 (1065)
Q Consensus 720 H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~-dG~p~~--~~-------------~~W~-----~ln~ 778 (1065)
|++||+||+|+|+||++..++||.....+.+.+.+++.|.... ++.+.. .. ..|. .||+
T Consensus 80 h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~ 159 (391)
T d1lwha2 80 HDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNY 159 (391)
T ss_dssp HHTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCT
T ss_pred HhcCCEEeecccccccccccccccccccCCccccccceecCCccccCccccCCCCccccccCCCcccccccCCcCCcccc
Confidence 9999999999999999999999999887777788888776432 111000 00 0010 1899
Q ss_pred CCHHHHHHHHHHHHh----------------cC----------------CceEEEeecCCCChHHHhhhccCCCCccccc
Q psy15051 779 TSREVMRSQKDVVQS----------------FP----------------LILMIITEAYSPSLEKVAKYYGTGDTQGTHL 826 (1065)
Q Consensus 779 ~n~~v~~~l~~~lk~----------------~~----------------~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~ 826 (1065)
.|++|+++|.++++. +. ...+.++|.|..... ... .. ..+++
T Consensus 160 ~n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~-~~----~~~~~ 233 (391)
T d1lwha2 160 DNPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARM-VDE-HG----RIFGY 233 (391)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSS-HHH-HH----HHHEE
T ss_pred ccchhhHHHHHHHHHHhhcCCCcceechHHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhcccce-eec-cc----cccCc
Confidence 999999999998432 11 146789998875211 111 11 22444
Q ss_pred cccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC---HHHHHHHHHHHHhCCCeEEEE
Q psy15051 827 SVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS---PDLVDAMNMLTLLLPGTAVTF 900 (1065)
Q Consensus 827 ~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~---~~~~kla~~ll~tlpGiP~Iy 900 (1065)
.+++.+...+.. ......+...+... ........++|++|||+.|+.+..+ .+++++|++++||+||+||||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~Iy 311 (391)
T d1lwha2 234 MLNFDTSHCIKEAVWKENTRVLIESIERA--VIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVF 311 (391)
T ss_dssp EECHHHHHHHHHHHHHTCTHHHHHHHHHH--TSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEE
T ss_pred eecccHHHHHHHHHhhccHHHHHHHHHhh--cccCCcccccccccccccccccccccchhhHHHHHHHHhhcCCCCCEEe
Confidence 555555444321 12333343333322 2233455677999999999988764 568899999999999999999
Q ss_pred cccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcH
Q psy15051 901 AGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSH 980 (1065)
Q Consensus 901 yGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l 980 (1065)
||||+|+.+.. + ...++..|.||+|++...++|++..+|.+.+.+|...|++.|...++++
T Consensus 312 yGdE~G~~~~~-------~------------~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~ 372 (391)
T d1lwha2 312 YGDELGMKGVY-------Q------------KPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSI 372 (391)
T ss_dssp TTGGGTCCCCC-------C------------SSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSH
T ss_pred cchhcCCcCCC-------C------------CCCcccccCCCCCCCCCCCCCCCCCCCcCCCCcccccCHHHHHhCchHH
Confidence 99999998753 1 1124557899999998888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccC
Q psy15051 981 YSVYKDLTTLRATSGAVRM 999 (1065)
Q Consensus 981 ~~~~r~Li~LRk~~paL~~ 999 (1065)
+++||+|++|||+||||.+
T Consensus 373 ~~~~~~Li~lRk~~~al~r 391 (391)
T d1lwha2 373 LSHTLGWTRFRKENQWIDR 391 (391)
T ss_dssp HHHHHHHHHHHHTCGGGGG
T ss_pred HHHHHHHHHHHhhChhhcC
Confidence 9999999999999999963
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.8e-49 Score=451.45 Aligned_cols=325 Identities=24% Similarity=0.413 Sum_probs=240.3
Q ss_pred cCChhhcccceEEEEecccccCcCCCCC--CC--CCC-cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGI--GD--LRG-KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG 625 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~--Gd--l~g-~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~ 625 (1065)
..+|+||+++|||||+||+|+++++++. +. ... ....+.+++||+ +||++||||||+||||+||||||++++++
T Consensus 3 ~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~gi~~kldyl~~LGv~~i~L~Pi~~~~~~ 81 (382)
T d1j0ha3 3 FEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDL-QGIIDHLDYLVDLGITGIYLTPIFRSPSN 81 (382)
T ss_dssp CCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred CCCCcchhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCH-HHHHHhHHHHHHcCCCEEEeCCCCcCCcc
Confidence 3578999999999999999999886542 11 000 122345666666 69999999999999999999999999875
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
|||++.||++|||+|||+++||+||++|
T Consensus 82 -~gy~~~d~~~vd~~~Gt~~~~~~lv~~a--------------------------------------------------- 109 (382)
T d1j0ha3 82 -HKYDTADYFEVDPHFGDKETLKTLIDRC--------------------------------------------------- 109 (382)
T ss_dssp -SCCSCSEEEEECTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred -cCCCcccccccCCCCCCHHHHHHHHHHh---------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCCCCC-CCCCCCCC---c---cc
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGK-PGTPPNNW---K---HI 776 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~dG~-p~~~~~~W---~---~l 776 (1065)
|++||+||+|+|+||++.+|+|+...... ...+.+||.+....... +......| . .|
T Consensus 110 --------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 175 (382)
T d1j0ha3 110 --------------HEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKL 175 (382)
T ss_dssp --------------HHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBB
T ss_pred --------------hhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccccccccCCCCccc
Confidence 99999999999999999999999876543 45678888765443111 11111111 1 19
Q ss_pred cCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHHHhhhccCCCCccc
Q psy15051 777 NITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT 824 (1065)
Q Consensus 777 n~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~ 824 (1065)
|+.||+||++|++++ ++..|+++++||.|..... ++.. .++
T Consensus 176 n~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~~----~~~~---~~~ 248 (382)
T d1j0ha3 176 NTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAMP----WLRG---DQF 248 (382)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCGG----GCSS---SSC
T ss_pred ccChHHHHHHHHHHHHhHhhhccccEEEecchhhcchhhhhhhhhhhhccCCCccccccccccchh----hhcc---ccc
Confidence 999999999999872 2245588999999986332 2221 345
Q ss_pred cccccHHHHHHh----hc-CCChHHHHHHHHHHhhcCCC--CCcccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCC
Q psy15051 825 HLSVNYEIMNKF----GA-TSNAKDLENVVNAYLKSLPS--GKWSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPG 895 (1065)
Q Consensus 825 d~~~~~~~~~~~----~~-~~~~~~l~~~l~~~~~~~~~--~~~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpG 895 (1065)
+..+++.+...+ .. ......+...........+. .....+|++|||+.|+++.++. ++++++++++|++||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~~lllt~pG 328 (382)
T d1j0ha3 249 DAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLFQLTFTG 328 (382)
T ss_dssp SEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSS
T ss_pred ccccccccchhhhhhhhcccccchhhhhhhhhcccccccccCccceeeccCCCCCccccccCChHHHHHHHHHHHHHcCC
Confidence 666665555433 22 23344444444433332221 1123459999999999999874 467899999999999
Q ss_pred eEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhc
Q psy15051 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKK 975 (1065)
Q Consensus 896 iP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~ 975 (1065)
+||||||||+|+.+.. ||. +|.+|+|+...
T Consensus 329 ~P~iy~G~E~G~~~~~-------~~~----------------~r~~~~W~~~~--------------------------- 358 (382)
T d1j0ha3 329 SPCIYYGDEIGMTGGN-------DPE----------------CRKCMVWDPMQ--------------------------- 358 (382)
T ss_dssp CCEEETTGGGTCCCCS-------TTG----------------GGCCCCCCTTT---------------------------
T ss_pred CCEEEcChhhCcCCCC-------Ccc----------------cccCCCCCccc---------------------------
Confidence 9999999999998752 333 56789998643
Q ss_pred CCCcHHHHHHHHHHHHHhcccccC
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVRM 999 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~~ 999 (1065)
..+++++++|+|++||+++|||++
T Consensus 359 ~~~~l~~~~k~L~~lR~~~paL~r 382 (382)
T d1j0ha3 359 QNKELHQHVKQLIALRKQYRSLRR 382 (382)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCHHhCc
Confidence 235699999999999999999963
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=7.4e-49 Score=450.27 Aligned_cols=324 Identities=24% Similarity=0.405 Sum_probs=239.7
Q ss_pred CChhhcccceEEEEecccccCcCCCCC--CCCC----CcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCC
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNNDGI--GDLR----GKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNG 625 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~d~~--Gdl~----g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~ 625 (1065)
++|+||+++|||||+||||+++++++. ++.. +......+++||+ +||++||||||+||||+||||||++++..
T Consensus 3 ~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~gi~~kLdyl~~lGi~~I~l~Pv~~~~~~ 81 (382)
T d1wzla3 3 TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDL-KGVIDRLPYLEELGVTALYFTPIFASPSH 81 (382)
T ss_dssp CCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEECSSS
T ss_pred CCCccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCH-HHHHHhhHHHHHCCCCEEEECCcCCCCcc
Confidence 578999999999999999999875432 1111 1123345667776 79999999999999999999999998765
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
|||++.||++|||+|||++|||+||++|
T Consensus 82 -~gY~~~~~~~vd~~~Gt~~d~~~lv~~~--------------------------------------------------- 109 (382)
T d1wzla3 82 -HKYDTADYLAIDPQFGDLPTFRRLVDEA--------------------------------------------------- 109 (382)
T ss_dssp -SCCSCSEEEEECTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred -cCCccccccccccCCCCHHHHHHHHHHH---------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCC-CCCCCCCC-------CCCcc
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGL-NGKPGTPP-------NNWKH 775 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~-dG~p~~~~-------~~W~~ 775 (1065)
|++||+||+|+|+||++..|+|+++.... ...+.+||.+.+.. .+.+.... ..+..
T Consensus 110 --------------H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 175 (382)
T d1wzla3 110 --------------HRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPK 175 (382)
T ss_dssp --------------HTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSCCSBCBSSSSCTTCBB
T ss_pred --------------HhcccceEeeeeecccccccccccchhhcCccccccccccccccccccCCCCcccccccccccCCc
Confidence 99999999999999999999999886543 56688888776433 11111111 11222
Q ss_pred ccCCCHHHHHHHHHH-------------------------------HHhcCCceEEEeecCCCChHHHhhhccCCCCccc
Q psy15051 776 INITSREVMRSQKDV-------------------------------VQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT 824 (1065)
Q Consensus 776 ln~~n~~v~~~l~~~-------------------------------lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~ 824 (1065)
||+.||+|+++++++ ++++.++++++||.+....... .. .++
T Consensus 176 Ln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~~~~---~~----~~~ 248 (382)
T d1wzla3 176 LRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWL---MG----DQF 248 (382)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCGGGC---SS----SSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCceeecchhhcchhhhhHHHHHHHhhCCceEEeeecccccchhh---cc----ccc
Confidence 999999999999998 2335668999999998743321 11 235
Q ss_pred cccccHHHHHHh----h-cCCChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCC
Q psy15051 825 HLSVNYEIMNKF----G-ATSNAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPG 895 (1065)
Q Consensus 825 d~~~~~~~~~~~----~-~~~~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpG 895 (1065)
+..+++.+...+ . .......+...........+.. ....+|++|||+.|+++.++. .+.+++++++||+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~llt~pG 328 (382)
T d1wzla3 249 DSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQMTYLG 328 (382)
T ss_dssp SEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHHHSSS
T ss_pred chhhhhhHHHHHHHhhhcCccchhhHHHHHHhhhhcccccccccceeeecCCCccchHhhcCCCHHHHHHHHHHHHHcCC
Confidence 555555554433 2 2333333333333333222221 122349999999999998864 467899999999999
Q ss_pred eEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhc
Q psy15051 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKK 975 (1065)
Q Consensus 896 iP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~ 975 (1065)
+||||||||+|+.+.. ||. +|.+|+|+..+
T Consensus 329 ~P~iy~G~E~g~~g~~-------~~~----------------~r~~~~W~~~~--------------------------- 358 (382)
T d1wzla3 329 TPLIYYGDEIGMAGAT-------DPD----------------CLRPMIWEEKE--------------------------- 358 (382)
T ss_dssp EEEEETTGGGTCCCCS-------TTG----------------GGCCCCCCGGG---------------------------
T ss_pred CCEEEcCcccCCCCCC-------Ccc----------------ccCCCCCCccc---------------------------
Confidence 9999999999998752 332 56789998643
Q ss_pred CCCcHHHHHHHHHHHHHhcccccC
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVRM 999 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~~ 999 (1065)
..+++++++|+|++|||++|||++
T Consensus 359 ~~~~l~~~~~~L~~lR~~~paL~r 382 (382)
T d1wzla3 359 QNRGLFEFYKELIRLRHRLASLTR 382 (382)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cChHHHHHHHHHHHHHhhCHhhCC
Confidence 235799999999999999999963
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=2.4e-48 Score=448.25 Aligned_cols=330 Identities=28% Similarity=0.535 Sum_probs=256.0
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHH--------HHcCcCEEEeCCCCcCCCCCCC
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYL--------KELGVETLWLTPFYSGPNGDIG 628 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYL--------k~LGvnaI~L~PI~~~~~~~~G 628 (1065)
-|++|||||||++|+++++++.|||+ ||++||||| |+||||+||||||+++++. ||
T Consensus 2 ~k~~v~Y~~~~~~f~d~~~~~~Gd~~---------------g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~-~G 65 (409)
T d1wzaa2 2 EKHGTYYEIFVRSFYDSDGDGIGDLK---------------GIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSY-HG 65 (409)
T ss_dssp CCCCCEEEECGGGSCCSSSSSCCCHH---------------HHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSS-SC
T ss_pred CCccEEEEEecchhcCCCCCCCcCHH---------------HHHHhccccccccccHHhhcCccEEEECCCCCCCCC-CC
Confidence 46899999999999999999999999 999999998 7999999999999998875 99
Q ss_pred CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCc
Q psy15051 629 YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWR 708 (1065)
Q Consensus 629 Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 708 (1065)
|++.||++|||+|||.+|||+||++|
T Consensus 66 Y~~~d~~~vd~~~G~~~dlk~lv~~~------------------------------------------------------ 91 (409)
T d1wzaa2 66 YDVTDYYKINPDYGTLEDFHKLVEAA------------------------------------------------------ 91 (409)
T ss_dssp CSCSEEEEECGGGCCHHHHHHHHHHH------------------------------------------------------
T ss_pred cCcccCCCcCcccCCHHHHHHHHHHH------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred cCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCCCCcceeecCCCCCCCC-CCC---------------C
Q psy15051 709 AGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDPYTNYYVWKDGLNGKPG-TPP---------------N 771 (1065)
Q Consensus 709 ~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~~~d~y~~~~~~dG~p~-~~~---------------~ 771 (1065)
|++||+||+|+|+||++.+|+|+.+.... ...+.+||.+.......+. ... .
T Consensus 92 -----------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1wzaa2 92 -----------HQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY 160 (409)
T ss_dssp -----------HHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred -----------HhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCccccCCCcccccccccccccc
Confidence 99999999999999999999999987654 4556777776543211100 000 0
Q ss_pred CCcc---ccCCCHHHHHHHHHHHHh---------------------------------------cCCceEEEeecCCCCh
Q psy15051 772 NWKH---INITSREVMRSQKDVVQS---------------------------------------FPLILMIITEAYSPSL 809 (1065)
Q Consensus 772 ~W~~---ln~~n~~v~~~l~~~lk~---------------------------------------~~~~~~ligE~~~~~~ 809 (1065)
.|.. ||+.||+||+++.++++. .+ ++++++|.+.. +
T Consensus 161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~-~ 238 (409)
T d1wzaa2 161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVK-PVYLVGEVWDI-S 238 (409)
T ss_dssp SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTS-CCEEEEECCSC-H
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHHHcCCCeecccchhhcccchhccchhHHHHHHHHhhccCC-CcEEEEEeecC-c
Confidence 1111 999999999999998332 12 68899999987 5
Q ss_pred HHHhhhccCCCCccccccccHHHHHHhh----cCCChH---HHHHHHHHHhhcC-CCCCcccccccCCChhhHhhhcCH-
Q psy15051 810 EKVAKYYGTGDTQGTHLSVNYEIMNKFG----ATSNAK---DLENVVNAYLKSL-PSGKWSSWMVGGHSITRIATRYSP- 880 (1065)
Q Consensus 810 ~~~~~y~~~~~~~~~d~~~~~~~~~~~~----~~~~~~---~l~~~l~~~~~~~-~~~~~~~~flenHD~~Rl~s~~~~- 880 (1065)
+....+.+ .+++..+++.+...+. ...... ............. ....+..+|++|||+.|+.+.++.
T Consensus 239 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~ 314 (409)
T d1wzaa2 239 ETVAPYFK----YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQD 314 (409)
T ss_dssp HHHGGGGT----TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTC
T ss_pred cchhhhhh----cccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhhhhhccccccccccccccccCccccccCCc
Confidence 55666665 3467777776665542 222211 1111111111112 123344569999999999999864
Q ss_pred -HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCC
Q psy15051 881 -DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWL 959 (1065)
Q Consensus 881 -~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl 959 (1065)
++.+++++++||+||+||||||||+|+.+.. + ++..|.||+|++....++ .+|.
T Consensus 315 ~~~~~~~~~~~lt~pG~P~iy~G~E~G~~~~~-------~---------------~~~~R~p~~w~~~~~~~~---~~~~ 369 (409)
T d1wzaa2 315 RNKARVAASIYLTLPGNPFIYYGEEIGMRGQG-------P---------------HEVIREPFQWYNGSGEGE---TYWE 369 (409)
T ss_dssp HHHHHHHHHHHTTSSSCCEEETTGGGTCCCCS-------S---------------HHHHTCCCCCSSSCCTTC---CCSS
T ss_pred hHHHHHHHHHHHhCCCCCEEecChhhCccCCC-------C---------------CccccCCCCCCCCCCCCC---CcCC
Confidence 5788889999999999999999999998752 1 223688999998776655 4677
Q ss_pred CCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
+...++...+++.|....++++++||+||+|||++|||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~lRk~~pal~ 408 (409)
T d1wzaa2 370 PAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFY 408 (409)
T ss_dssp CCTTTTTTCCHHHHTTCTTSHHHHHHHHHHHHHHCTHHH
T ss_pred cccccccccCHHHHhhCcHHHHHHHHHHHHHHhhCchhc
Confidence 788888889999998888999999999999999999986
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=7.7e-49 Score=449.81 Aligned_cols=325 Identities=20% Similarity=0.380 Sum_probs=239.9
Q ss_pred CChhhcccceEEEEecccccCcCCCC--CCCCCC---cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCC
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNNDG--IGDLRG---KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGD 626 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~d~--~Gdl~g---~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~ 626 (1065)
.+|+||+++|||||+||||+++++++ .|.... ......+++||+ +||++||||||+||||+||||||+++.++
T Consensus 2 ~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~-~gi~~kLdylk~LGv~~i~l~Pi~~~~~~- 79 (382)
T d1ea9c3 2 QPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDL-QGVIDHLDHLSKLGVNAVYFTPLFKATTN- 79 (382)
T ss_dssp CCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCH-HHHHHTHHHHHHHTCSEEEECCCSSCSSS-
T ss_pred CCCccccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCH-HHHHHhhHHHHhCCCCEEEeCCCccCCCC-
Confidence 45899999999999999999987543 222110 123345666776 79999999999999999999999998775
Q ss_pred CCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCC
Q psy15051 627 IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQN 706 (1065)
Q Consensus 627 ~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 706 (1065)
|||++.||++|||+|||++|||+||++|
T Consensus 80 ~gY~~~~~~~id~~~Gt~~df~~lv~~~---------------------------------------------------- 107 (382)
T d1ea9c3 80 HKYDTEDYFQIDPQFGDKDTLKKLVDLC---------------------------------------------------- 107 (382)
T ss_dssp STTSCSCTTCCCTTTCCHHHHHHHHHHH----------------------------------------------------
T ss_pred CCCCcccccccccccCCHHHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCcceeecCCCCCCCC-CCCC------CCc-cc
Q psy15051 707 WRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYVWKDGLNGKPG-TPPN------NWK-HI 776 (1065)
Q Consensus 707 ~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~~~~~~dG~p~-~~~~------~W~-~l 776 (1065)
|++||+||+|+|+||++.+|+|+.+.... ...+.+||.+......... .... .+. .+
T Consensus 108 -------------h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (382)
T d1ea9c3 108 -------------HERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKL 174 (382)
T ss_dssp -------------TTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCCSBCBSSSCTTSBBC
T ss_pred -------------HhhcceEEEeeecccccccCcchhhhhhcCCcccccccccccccccccccCcccccccccccccCcc
Confidence 99999999999999999999999887654 4457777765543211100 0000 011 18
Q ss_pred cCCCHHHHHHHHHHH--------------------------------HhcCCceEEEeecCCCChHHHhhhccCCCCccc
Q psy15051 777 NITSREVMRSQKDVV--------------------------------QSFPLILMIITEAYSPSLEKVAKYYGTGDTQGT 824 (1065)
Q Consensus 777 n~~n~~v~~~l~~~l--------------------------------k~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~ 824 (1065)
|+.|++|+++|.+++ ++..++++++||.+..... ++.. .++
T Consensus 175 n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~----~~~~---~~~ 247 (382)
T d1ea9c3 175 NTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI----WLEG---DQF 247 (382)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT----TTTT---TSC
T ss_pred ccccHHHHHHHHHHHhhcccceeeeEEEecchhhCchhhhhhhhhhhhhcCCCeeEEeeecccccc----cccC---ccc
Confidence 999999999999872 2245589999999976322 1111 233
Q ss_pred cccccHHHH----HHhh-cCCChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcC--HHHHHHHHHHHHhCCC
Q psy15051 825 HLSVNYEIM----NKFG-ATSNAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYS--PDLVDAMNMLTLLLPG 895 (1065)
Q Consensus 825 d~~~~~~~~----~~~~-~~~~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~tlpG 895 (1065)
...+++.+. +.+. .......+...+.......+.. ....+|++|||+.|+++.++ .++.+++++++|++||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~~~l~~pG 327 (382)
T d1ea9c3 248 DAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVLFQFTYFG 327 (382)
T ss_dssp SEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHHHHTTSSS
T ss_pred cccccccchhhhHhhhhccccchhHHHHHHHHHHHhchhhcccceeeeeccCcccccccccCCHHHHHHHHHHHHHHcCC
Confidence 444444444 3332 2345555655555544433322 12345999999999999876 4578889999999999
Q ss_pred eEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhc
Q psy15051 896 TAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKK 975 (1065)
Q Consensus 896 iP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~ 975 (1065)
+||||||||+|+.+.. |+. +|.+|+|+...
T Consensus 328 ~P~Iy~G~E~g~~~~~-------~~~----------------~r~~~~w~~~~--------------------------- 357 (382)
T d1ea9c3 328 TPCIYYGDEVGLDGGH-------DPG----------------CRKCMEWDETK--------------------------- 357 (382)
T ss_dssp EECCCSSCSSCCCCCS-------HHH----------------HTCCCCCCTTS---------------------------
T ss_pred CCEEEccHhhCCCCCC-------CCC----------------ccCCCCCCCCc---------------------------
Confidence 9999999999998642 222 67899998643
Q ss_pred CCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 976 TKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 976 ~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
..++++++||+|++|||++|||+.|
T Consensus 358 ~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 358 HDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCHHhcCC
Confidence 1356899999999999999999876
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=7.3e-48 Score=446.76 Aligned_cols=328 Identities=25% Similarity=0.355 Sum_probs=230.9
Q ss_pred ChhhcccceEEEEecccccCcCCCCC--CCCCC-----cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC--
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGI--GDLRG-----KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-- 623 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~--Gdl~g-----~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-- 623 (1065)
++.||+++|||||+||||.||++++. +...+ ......|+|||+ +||++||||||+||||+||||||++++
T Consensus 2 ~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~-~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDL-EGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCH-HHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CchhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCH-HHHHHHHHHHHHcCCCEEEeCccccCCcc
Confidence 57899999999999999998874321 10000 011234677777 799999999999999999999999864
Q ss_pred ------CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCc
Q psy15051 624 ------NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNP 697 (1065)
Q Consensus 624 ------~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 697 (1065)
.++|||++.||++|||+|||++|||+||++|
T Consensus 81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~------------------------------------------- 117 (407)
T d1qhoa4 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDA------------------------------------------- 117 (407)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHH-------------------------------------------
T ss_pred cCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHh-------------------------------------------
Confidence 3469999999999999999999999999999
Q ss_pred cccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceee----cCCCCCC--CCCCCC
Q psy15051 698 VYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVW----KDGLNGK--PGTPPN 771 (1065)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~----~~~~dG~--p~~~~~ 771 (1065)
|++||+||||+|+||++..++|+.........+.+...+ .....+. +.....
T Consensus 118 ----------------------H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (407)
T d1qhoa4 118 ----------------------HQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDIS 175 (407)
T ss_dssp ----------------------HHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSSSCTTTCCBCCSCBCS
T ss_pred ----------------------hhcccceeeccccccccCCccccccccccCcccccCccccccccccccccccccCCCC
Confidence 888888888888888888777766544332222222211 1111111 000122
Q ss_pred CCcc-------------------ccCCCHHHHHHHHHHHHh------------------------c------CCceEEEe
Q psy15051 772 NWKH-------------------INITSREVMRSQKDVVQS------------------------F------PLILMIIT 802 (1065)
Q Consensus 772 ~W~~-------------------ln~~n~~v~~~l~~~lk~------------------------~------~~~~~lig 802 (1065)
+|.. ||+.|++|++++.++++. + .++++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~~~~~i~~~~~~~~~g 255 (407)
T d1qhoa4 176 NWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKSLADKLYQKKDIFLVG 255 (407)
T ss_dssp CTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCCCEEEE
T ss_pred CcccccccccccccCCccccCchhhhhhhhHHHHHHHhHHHHhhhcccccccccccccchhHHHHHHHHHHhccCcceee
Confidence 2321 899999999999998332 0 13789999
Q ss_pred ecCCCChHHH-----hhhccCCCCccccccccHHHHHHhh-cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhh
Q psy15051 803 EAYSPSLEKV-----AKYYGTGDTQGTHLSVNYEIMNKFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIAT 876 (1065)
Q Consensus 803 E~~~~~~~~~-----~~y~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s 876 (1065)
|.|...+... ..+........+.+.+...+...+. .......+...+.............++|++|||+.|+++
T Consensus 256 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~ 335 (407)
T d1qhoa4 256 EWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKENLITFIDNHDMSRFLS 335 (407)
T ss_dssp CCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGGCEECSCCTTSCCHHH
T ss_pred eecCCChhhhHHHHhhccccccccceehhhHHHHHHHHhhhcchhhhHHHHHHHHhhhccccchhhceecccCCcccccc
Confidence 9997644321 1122211112333444444444442 234566667666666555544444556999999999999
Q ss_pred hcC-HHHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCC
Q psy15051 877 RYS-PDLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA 955 (1065)
Q Consensus 877 ~~~-~~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~ 955 (1065)
..+ .++++++++++|++||+||||||||+|+.+.. ||. +|.+|+|.+.
T Consensus 336 ~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~-------d~~----------------~r~~~~~~~~-------- 384 (407)
T d1qhoa4 336 VNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGN-------DPY----------------NRGMMPAFDT-------- 384 (407)
T ss_dssp HCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCS-------TTT----------------TCCCCCCCCT--------
T ss_pred ccCCHHHHHHHHHHHHHcCCCcEEecCHhhCCCCCC-------Ccc----------------ccccCCcccC--------
Confidence 886 45788999999999999999999999998752 433 6788888753
Q ss_pred CCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 956 KSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 956 ~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
..++++++|+|++|||++|||+
T Consensus 385 ---------------------~~~~~~~~~~L~~lR~~~paLr 406 (407)
T d1qhoa4 385 ---------------------TTTAFKEVSTLAGLRRNNAAIQ 406 (407)
T ss_dssp ---------------------TSHHHHHHHHHHHHHHHCHHHH
T ss_pred ---------------------ChHHHHHHHHHHHHHhhCHhhC
Confidence 2468999999999999999996
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=5e-48 Score=447.80 Aligned_cols=328 Identities=21% Similarity=0.311 Sum_probs=237.0
Q ss_pred CChhhcccceEEEEecccccCcCC--CCCCCCCC--cccchhhhcccccccHHhhhH--HHHHcCcCEEEeCCCCcC---
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNN--DGIGDLRG--KNVRKRYLELTLGLGIIEKID--YLKELGVETLWLTPFYSG--- 622 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~--d~~Gdl~g--~~~~~~~~~~t~~~Gl~~kLd--YLk~LGvnaI~L~PI~~~--- 622 (1065)
..+.+|+++|||||+||||.||+. +..|+... ......|+|||+ +||++||| |||+||||+||||||+++
T Consensus 7 ~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl-~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~ 85 (406)
T d3bmva4 7 SNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDW-QGIINKINDGYLTGMGVTAIWIPQPVENIYA 85 (406)
T ss_dssp TCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCH-HHHHHHHHTSTTGGGTCCEEEECCCEEECCC
T ss_pred CCCCCCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCH-HHHHHhcCHHHHHHcCCCEEEECCccccccc
Confidence 356789999999999999998874 33333221 123356778888 89999999 999999999999999984
Q ss_pred ---------CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccccccccc
Q psy15051 623 ---------PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSV 693 (1065)
Q Consensus 623 ---------~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~ 693 (1065)
+..+|||+++||++|||+|||++|||+||++|
T Consensus 86 ~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~a--------------------------------------- 126 (406)
T d3bmva4 86 VLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTA--------------------------------------- 126 (406)
T ss_dssp CEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHH---------------------------------------
T ss_pred ccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHH---------------------------------------
Confidence 23469999999999999999999999999999
Q ss_pred ccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---CCCC-CCC
Q psy15051 694 YLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---NGKP-GTP 769 (1065)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---dG~p-~~~ 769 (1065)
|++||+||||+|+||++..++|+.........+.+++.+.... .+.. ...
T Consensus 127 --------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (406)
T d3bmva4 127 --------------------------HAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYG 180 (406)
T ss_dssp --------------------------HHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSC
T ss_pred --------------------------HhccccceeeeecccccccccchhhhcccCccccCCcccccccccccccccccc
Confidence 8888888888889999988888776543332233333222111 0000 000
Q ss_pred CCCCc--------------cccCCCHHHHHHHHHHHHh-------------------------------cCCceEEEeec
Q psy15051 770 PNNWK--------------HINITSREVMRSQKDVVQS-------------------------------FPLILMIITEA 804 (1065)
Q Consensus 770 ~~~W~--------------~ln~~n~~v~~~l~~~lk~-------------------------------~~~~~~ligE~ 804 (1065)
...|. .||+.+++++++|.++++. .. +.++++|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~ 259 (406)
T d3bmva4 181 GTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKNFMDSILSYR-PVFTFGEW 259 (406)
T ss_dssp BCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHHHHHHHHHHHHS-CCEEEECC
T ss_pred CccccccccccccccccccccccccHHHHHHHHHHHHHHhhcCCCccccccccccchhhHHHHHHHHHHhh-hccccccc
Confidence 01111 1899999999999998332 22 57889998
Q ss_pred CCCChH--HHhhhccC-CCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH
Q psy15051 805 YSPSLE--KVAKYYGT-GDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP 880 (1065)
Q Consensus 805 ~~~~~~--~~~~y~~~-~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~ 880 (1065)
+..... ....++.. .....+++.+...+...+.. ......+...+.......+.....++|++|||+.|+.+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~ 339 (406)
T d3bmva4 260 FLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDMDRFYNGGST 339 (406)
T ss_dssp CCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGGCEECSCCSSSCCSCCSSCS
T ss_pred cccccccccccccccCCCccceecchhhHHHHHhhccCcchhHHHHHHHhhhcccccchhhhcccccCCchhhhccCCCH
Confidence 865321 12222221 11133455555555555533 335666777776666555555555669999999999998888
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCC
Q psy15051 881 DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLP 960 (1065)
Q Consensus 881 ~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~ 960 (1065)
+++++|++++||+||+||||||||+|+.+.. ||. +|.+|+|.+.
T Consensus 340 ~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~-------dp~----------------~r~~~~~~~~------------- 383 (406)
T d3bmva4 340 RPVEQALAFTLTSRGVPAIYYGTEQYMTGNG-------DPY----------------NRAMMTSFNT------------- 383 (406)
T ss_dssp HHHHHHHHHHHHSSSEEEEETTGGGTCCCCS-------TTG----------------GGCCCCCCCT-------------
T ss_pred HHHHHHHHHHHHhCCCCEEecChhhCcCCCC-------Chh----------------hhhcCCCCCC-------------
Confidence 8999999999999999999999999998752 444 6788888652
Q ss_pred CCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhccccc
Q psy15051 961 VHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVR 998 (1065)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~ 998 (1065)
.+++++++|+|++|||++|||+
T Consensus 384 ----------------~~~~~~~~~~Li~lRk~~paLr 405 (406)
T d3bmva4 384 ----------------STTAYNVIKKLAPLRKSNPAIA 405 (406)
T ss_dssp ----------------TSHHHHHHHHHTTHHHHCHHHH
T ss_pred ----------------ChHHHHHHHHHHHHHhhChhhc
Confidence 2468999999999999999996
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=3.2e-47 Score=442.40 Aligned_cols=342 Identities=18% Similarity=0.307 Sum_probs=235.6
Q ss_pred hhhcccceEEEEecccccCcC--CCCCC--CCCC-cccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---C
Q psy15051 554 KEWWKNTVIYQILVPSFKDSN--NDGIG--DLRG-KNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN---G 625 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~--~d~~G--dl~g-~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~---~ 625 (1065)
+.||+++|||||+||||.+|| +|..+ ...+ ......++|||+ +||++||||||+||||+||||||++++. .
T Consensus 6 ~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~-~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~~ 84 (422)
T d1h3ga3 6 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDI-RGTIDHLDYIAGLGFTQLWPTPLVENDAAAYS 84 (422)
T ss_dssp CCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCH-HHHHHTHHHHHHHTCCEEEECCCEECCCSSCG
T ss_pred CCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCH-HHHHHhHHHHHHCCCCEEEeCCcccCCCCCCC
Confidence 459999999999999999877 23221 1111 112334556666 6999999999999999999999998753 4
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++|||+||++|
T Consensus 85 ~~GY~~~d~~~vd~~~Gt~~df~~lv~~~--------------------------------------------------- 113 (422)
T d1h3ga3 85 YHGYAATDHYRIDPRYGSNEDFVRLSTEA--------------------------------------------------- 113 (422)
T ss_dssp GGCCSCSEEEEECTTTCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCCCccccCCcccccCCHHHHHHHHHHH---------------------------------------------------
Confidence 69999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC---CCCC--CCCCCC--------
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL---NGKP--GTPPNN-------- 772 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~---dG~p--~~~~~~-------- 772 (1065)
|++||+||+|+|+||++.+|+|+.+.. +.+++.+.... +..+ ...+..
T Consensus 114 --------------H~~Gi~VilD~V~NH~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (422)
T d1h3ga3 114 --------------RKRGMGLIQDVVLSHIGKHHWWMKDLP-----TPDWINYGGKFVPTQHHRVAVQDPYAAQADSENF 174 (422)
T ss_dssp --------------HHTTCEEEEEECCSBCCTTSGGGGSCS-----STTSBSCCSSCCBCCCCGGGGSCTTCCHHHHHHH
T ss_pred --------------HHhCccccccCccccccccchhhcccc-----ccccccccccccccccccccccccccccCcccce
Confidence 899999999999999999999997643 22333222111 0000 000000
Q ss_pred --------CccccCCCHHHHHHHHHHHH--------------------------------hcCCceEEEeecCCCChHHH
Q psy15051 773 --------WKHINITSREVMRSQKDVVQ--------------------------------SFPLILMIITEAYSPSLEKV 812 (1065)
Q Consensus 773 --------W~~ln~~n~~v~~~l~~~lk--------------------------------~~~~~~~ligE~~~~~~~~~ 812 (1065)
...||+.||+|+++|.++++ +..++++++||.|......+
T Consensus 175 ~~~~~~~~~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR~Da~~~~~~~f~~~~~~~~~~~~~~~~~i~E~~~~~~~~~ 254 (422)
T d1h3ga3 175 TKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGEEWSTRVPVV 254 (422)
T ss_dssp HHSBSSTTSCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCCCSCHHHH
T ss_pred eecccccCccccccccHHHHHHHhhhHHHHhhheeeeeeeecccccccchhhhhhhhhhhhccccceEEeeccccchhhh
Confidence 01199999999999998822 23458999999999866655
Q ss_pred hhhccCCC-----CccccccccHHHHHH----hhcCC---ChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH
Q psy15051 813 AKYYGTGD-----TQGTHLSVNYEIMNK----FGATS---NAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP 880 (1065)
Q Consensus 813 ~~y~~~~~-----~~~~d~~~~~~~~~~----~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~ 880 (1065)
..+..... ...++..+++.+... +.... ....+...+.. ....+.....++|++|||+.|+++.++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~nHD~~R~~~~~~~ 333 (422)
T d1h3ga3 255 ARWQRGKANFDGYTSHLPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSL-DYLYPEPQNLVLFGGNHDMARMFSAAGE 333 (422)
T ss_dssp HTTSTTCCCTTCCCCCCCEEBCHHHHHHHHHHHHCTTCSSTTHHHHHHHHG-GGGSSSGGGSEEESCCTTSCCHHHHTTS
T ss_pred hhhccccccccccccchhhhhhhhHHHHHHHHHhhccccchhHHHHHHHhh-hcccccccceeeeecccccccccccccc
Confidence 55433211 122344555544443 32211 22233332222 2234444555679999999999999864
Q ss_pred --HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCC
Q psy15051 881 --DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSW 958 (1065)
Q Consensus 881 --~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~w 958 (1065)
.+.+++++++||+||+||||||||+|+.+.. ....|+. .| .+.||.|.....++|+....
T Consensus 334 ~~~~~~~a~~~llt~pG~P~iy~G~E~G~~~~~---~~~~d~~------------~r--~~~p~~w~~~~~~~~~~~~~- 395 (422)
T d1h3ga3 334 DFDRWRMNLVFLMTMPRIPQFYSGDEILMTSTV---KGRDDAS------------YR--RDFPGGWAGDKANAFSGAGL- 395 (422)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCC---SSSCGGG------------GS--CCCTTSSTTCSSCTTTCTTC-
T ss_pred cHHHHHHHHHHHHHcCCCcEEEcChhhCCcCCC---CCCCCcc------------hh--ccCccccCcccccCcCcccc-
Confidence 4678899999999999999999999998753 1111211 11 23578898877766654310
Q ss_pred CCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 959 LPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 959 l~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
.....++++++|+|++|||++|||+.|
T Consensus 396 ---------------~~~~~~~~~~~~~L~~lR~~~paL~~G 422 (422)
T d1h3ga3 396 ---------------TSQQRAAQDLVRKLANWRKNQPVIHNG 422 (422)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHC
T ss_pred ---------------chhHHHHHHHHHHHHHHHhcCHHhhCC
Confidence 112246899999999999999999876
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=3e-47 Score=438.44 Aligned_cols=330 Identities=20% Similarity=0.298 Sum_probs=242.7
Q ss_pred ChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-------CC
Q psy15051 553 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-------NG 625 (1065)
Q Consensus 553 ~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-------~~ 625 (1065)
+|..|++.|||||+||||+++++++... +......|+|||+ +||+++|||||+||||+||||||+++. ..
T Consensus 2 ~p~~W~~~~iY~i~~~~F~~~~~~~~~~--~~~~~~~~~gGd~-~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~ 78 (381)
T d2guya2 2 TPADWRSQSIYFLLTDRFARTDGSTTAT--CNTADQKYCGGTW-QGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDA 78 (381)
T ss_dssp CHHHHTTCCEEEECHHHHCBTTCCSSCC--CCGGGTCCCCBCH-HHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCC
T ss_pred CCccccCCeEEEEEcchhcCCCCCCCCC--CCCccCccCCcCH-HHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCC
Confidence 4566788999999999999988765421 2233345666666 699999999999999999999999864 24
Q ss_pred CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCC
Q psy15051 626 DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQ 705 (1065)
Q Consensus 626 ~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 705 (1065)
+|||++.||++|||+|||++|||+||++|
T Consensus 79 ~~gY~~~d~~~vd~~~Gt~~dfk~lv~~~--------------------------------------------------- 107 (381)
T d2guya2 79 YHGYWQQDIYSLNENYGTADDLKALSSAL--------------------------------------------------- 107 (381)
T ss_dssp TTSCSEEEEEEECTTSCCHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCcccccccccccCCCCHHHHHHHHHHH---------------------------------------------------
Confidence 59999999999999999999999999999
Q ss_pred CCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCC----CCCCc-------
Q psy15051 706 NWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTP----PNNWK------- 774 (1065)
Q Consensus 706 ~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~----~~~W~------- 774 (1065)
|++||+||+|+|+||+|.+++|+........++.+.+.+........... ...|.
T Consensus 108 --------------H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (381)
T d2guya2 108 --------------HERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSL 173 (381)
T ss_dssp --------------HHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHHHHHSBEECSSEEE
T ss_pred --------------HhhccceeeeccccccccccCcccccccccCCCCcccceeccccccccccccccceeeccCCcccc
Confidence 88888888889999999888887664332222222221111100000000 00011
Q ss_pred -cccCCCHHHHHHHHHHHHh-----------------cC----------CceEEEeecCCCChHHHhhhccCCCCccccc
Q psy15051 775 -HINITSREVMRSQKDVVQS-----------------FP----------LILMIITEAYSPSLEKVAKYYGTGDTQGTHL 826 (1065)
Q Consensus 775 -~ln~~n~~v~~~l~~~lk~-----------------~~----------~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~ 826 (1065)
.||+.||+|++++.++++. +. ++++++||.|...+.....+. ......+++
T Consensus 174 ~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~~-~~~~~~~d~ 252 (381)
T d2guya2 174 PDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQ-NVMDGVLNY 252 (381)
T ss_dssp CBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGGG-GTSSEEBCH
T ss_pred chhccccHHHHHHHHHHhhhccccccccceeeehHhhcCHHHHHhhhhcceeeeeeecccccHhhhcccc-ccccceecc
Confidence 1999999999999987432 11 168899999988666554433 222345666
Q ss_pred cccHHHHHHhh-cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC-HHHHHHHHHHHHhCCCeEEEEcccc
Q psy15051 827 SVNYEIMNKFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVTFAGDE 904 (1065)
Q Consensus 827 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~-~~~~kla~~ll~tlpGiP~IyyGdE 904 (1065)
.+...+.+.+. .......+...+......++.......|++|||++|+++..+ .++++++++++||+||+||||||||
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t~pGiP~iy~G~E 332 (381)
T d2guya2 253 PIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQE 332 (381)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHHSSSEEEEETTGG
T ss_pred hhHHHHHHHHhccCCchHHHHHHHHHHHhhcCccccceeeccCcCccccccccCCHHHHHHHHHHHHHcCCCcEEEcccc
Confidence 66666666664 355778888888887777777777777999999999999987 4578899999999999999999999
Q ss_pred cCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHH
Q psy15051 905 LGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVY 984 (1065)
Q Consensus 905 ~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~ 984 (1065)
+|+.+.. ||. +|.+|.|+... ...++++++
T Consensus 333 ~g~~g~~-------~~~----------------~r~~~~~~~~~---------------------------~~~~l~~~i 362 (381)
T d2guya2 333 QHYAGGN-------DPA----------------NREATWLSGYP---------------------------TDSELYKLI 362 (381)
T ss_dssp GTCCCCS-------TTT----------------TCCCGGGGTCC---------------------------TTSHHHHHH
T ss_pred cCcCCCC-------Ccc----------------hhcccccccCc---------------------------CCHHHHHHH
Confidence 9998752 332 56667665421 135699999
Q ss_pred HHHHHHHHhcccccCCC
Q psy15051 985 KDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 985 r~Li~LRk~~paL~~G~ 1001 (1065)
|+|++|||+..+++.|-
T Consensus 363 ~~L~~lR~~~~~~~~~~ 379 (381)
T d2guya2 363 ASANAIRNYAISKDTGF 379 (381)
T ss_dssp HHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhHHhhccCCC
Confidence 99999999988887663
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=2.3e-47 Score=444.99 Aligned_cols=334 Identities=23% Similarity=0.391 Sum_probs=227.3
Q ss_pred cCChhhcccceEEEEecccccCcCCCCC---CC-------------------CCCcccchhhhcccccccHHhhhHHHHH
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGI---GD-------------------LRGKNVRKRYLELTLGLGIIEKIDYLKE 608 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~---Gd-------------------l~g~~~~~~~~~~t~~~Gl~~kLdYLk~ 608 (1065)
.++|+||+++|||||+||||.||+.++- |. -.+......|+|||+ +||++||||||+
T Consensus 2 ~~~p~W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl-~Gi~~kLdYl~~ 80 (432)
T d1ji1a3 2 FKTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDL-AGIDQKLGYIKK 80 (432)
T ss_dssp CCCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCH-HHHHHTHHHHHT
T ss_pred CCCCccccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCH-HHHHHHhhHHHh
Confidence 3579999999999999999998874321 11 001112345677777 899999999986
Q ss_pred -cCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccc
Q psy15051 609 -LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADK 687 (1065)
Q Consensus 609 -LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~ 687 (1065)
||||+||||||++++++ |||++.||++|||+|||++|||+||++||++||
T Consensus 81 ~LGv~~I~L~Pi~~~~~~-~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~---------------------------- 131 (432)
T d1ji1a3 81 TLGANILYLNPIFKAPTN-HKYDTQDYMAVDPAFGDNSTLQTLINDIHSTAN---------------------------- 131 (432)
T ss_dssp TTCCCEEEESCCEECSSS-SCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSS----------------------------
T ss_pred hcCCCEEEeCCCCcCCCC-CCcccccccccCcccCCHHHHHHHHHHHHHhhh----------------------------
Confidence 99999999999999875 999999999999999999999999999965553
Q ss_pred ccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc---------CCCCCcceee
Q psy15051 688 FAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK---------IDPYTNYYVW 758 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~---------~~~~~d~y~~ 758 (1065)
++||+||||+|+||++..|+||.+.... ..++.+++.+
T Consensus 132 ---------------------------------~~~I~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (432)
T d1ji1a3 132 ---------------------------------GPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPWYNYYTF 178 (432)
T ss_dssp ---------------------------------SSCCEEEEEECCSBCCTTSTTTCTTCCSSSCCTTTCTTCTTGGGBCE
T ss_pred ---------------------------------hcceeEeccccccccCCCchhHhhccCcccccccccccccccccccc
Confidence 3468899999999999999998764321 1111111110
Q ss_pred cC----------------------------------------------CCCCCCCCCCCCCc------cccCCCHHHHHH
Q psy15051 759 KD----------------------------------------------GLNGKPGTPPNNWK------HINITSREVMRS 786 (1065)
Q Consensus 759 ~~----------------------------------------------~~dG~p~~~~~~W~------~ln~~n~~v~~~ 786 (1065)
.. +.||+ |++..... ..+..+.++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~ln~~n~~~~v~~~~~~~~~~~~~~wl~~~~gvDGf-R~D~~~~i~~~~~~~~~~~~~~~~~~ 257 (432)
T d1ji1a3 179 YTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGW-RLDAAQYVDANGNNGSDVTNHQIWSE 257 (432)
T ss_dssp EETTTEECEETTEEEEEBBBCCSTTCHHHHHHTTSTTSHHHHHHSTTTCCCEE-EETTGGGCBSTTCCCSSHHHHHHHHH
T ss_pred cccccccccccccCccCccccCCCcHHHHHHHHHHHHHHHHHhhhhhcCccce-eeeceeeeccCCCCcccccchhHHHH
Confidence 00 00111 10000000 011112345666
Q ss_pred HHHHHHhcCCceEEEeecCCCChHHHhhhccCCCCccccc-cccHHHHHHhh--------cCCChHHHHHHHHHHhhcCC
Q psy15051 787 QKDVVQSFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHL-SVNYEIMNKFG--------ATSNAKDLENVVNAYLKSLP 857 (1065)
Q Consensus 787 l~~~lk~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~-~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~ 857 (1065)
+.+.+++..++++++||.+............. ....++ .+.......+. .......+...+.......+
T Consensus 258 ~~~~~~~~~~~~~~igE~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T d1ji1a3 258 FRNAVKGVNSNAAIIGEYWGNANPWTAQGNQW--DAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYP 335 (432)
T ss_dssp HHHHHHHHCTTCEEEECCSSCCGGGTTTSSSC--SEEBCTTTTHHHHHHHHTSBCTTSCBCCCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhCCCeEEEeeeccCccceecccccc--chhhhhhhhhHHHHHHhhcchhhcccccccHHHHHHHHHHhHhhcc
Confidence 66667777889999999998644322221111 011111 12222322221 12345566666666555444
Q ss_pred CC--CcccccccCCChhhHhhhcCH--HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCcccccccccccccc
Q psy15051 858 SG--KWSSWMVGGHSITRIATRYSP--DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKV 933 (1065)
Q Consensus 858 ~~--~~~~~flenHD~~Rl~s~~~~--~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~ 933 (1065)
.. ...++|++|||+.|++++++. .++++|++++||+||+||||||||+||.+.. ||.
T Consensus 336 ~~~~~~~~~f~~nHD~~R~~s~~~~~~~~~~~a~~~llt~pG~P~iyyGdE~G~~g~~-------d~~------------ 396 (432)
T d1ji1a3 336 TNVQQSMMNFLSNHDITRFATRSGGDLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGA-------DPD------------ 396 (432)
T ss_dssp HHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHHHHHTTSSSEEEEETTGGGTCCCCS-------TTG------------
T ss_pred cccccccccccccCCccchhhhcCCHHHHHHHHHHHHHHcCCCcEEEcCHhhCCCCCC-------Ccc------------
Confidence 32 223459999999999999875 4678889999999999999999999998752 433
Q ss_pred ccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 934 CRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 934 ~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
+|.+|+|+... ..+++++++|+|++|||++|||+.|
T Consensus 397 ----~R~~~~W~~~~---------------------------~~~~l~~~~~~L~~lR~~~paL~~G 432 (432)
T d1ji1a3 397 ----NRRSFDWSQAT---------------------------PSNSAVALTQKLITIRNQYPALRTG 432 (432)
T ss_dssp ----GGCCCCTTSSS---------------------------TTSHHHHHHHHHHHHHHHCHHHHHS
T ss_pred ----cccCCCCCcCC---------------------------CchHHHHHHHHHHHHHhcCHHhhCC
Confidence 67899998643 2357999999999999999999876
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=1.9e-46 Score=431.82 Aligned_cols=323 Identities=17% Similarity=0.275 Sum_probs=234.9
Q ss_pred hhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC-------CCC
Q psy15051 554 KEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP-------NGD 626 (1065)
Q Consensus 554 ~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~-------~~~ 626 (1065)
+.+|++.|||||+||||.++++++..... .....|+|||+ +||++||||||+||||+|||+||+++. ..+
T Consensus 3 ~~~W~~~~iY~i~~~~F~~~~~~~~~~~~--~~~~~~~gG~~-~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~ 79 (381)
T d2aaaa2 3 AASWRTQSIYFLLTDRFGRTDNSTTATCN--TGNEIYCGGSW-QGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAY 79 (381)
T ss_dssp HHHHTTCCEEECCHHHHCCTTCCSCCCCC--GGGCSCCCCCH-HHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCST
T ss_pred chhhCCCcEEEEEeCcccCCCCCCCCCCC--CCcCCcCCcCH-HHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCC
Confidence 45679999999999999998876542222 22345666666 699999999999999999999999853 235
Q ss_pred CCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCC
Q psy15051 627 IGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQN 706 (1065)
Q Consensus 627 ~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 706 (1065)
|||++.||++|||+|||++|||+||++|
T Consensus 80 ~gY~~~d~~~id~~~Gt~~~~k~lv~~a---------------------------------------------------- 107 (381)
T d2aaaa2 80 HGYWQQKIYDVNSNFGTADNLKSLSDAL---------------------------------------------------- 107 (381)
T ss_dssp TSCSEEEEEEECTTTCCHHHHHHHHHHH----------------------------------------------------
T ss_pred cccccccccccccccCCHHHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred CccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCc------------
Q psy15051 707 WRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWK------------ 774 (1065)
Q Consensus 707 ~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~------------ 774 (1065)
|++||+||+|+|+||++.+++|.........++.+...+... ....+|.
T Consensus 108 -------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 168 (381)
T d2aaaa2 108 -------------HARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPY------CLITDWDNLTMVEDCWEGD 168 (381)
T ss_dssp -------------HTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCC------CBCCCTTCHHHHHHSBEEC
T ss_pred -------------hhhhhcccccccccccccccCCccccccccCCcccccccCCC------ccccccccccccCCCccCC
Confidence 888888888888899988887755422111111111111100 0011111
Q ss_pred ------cccCCCHHHHHHHHHHHH----hc-----------------------CCceEEEeecCCCChHHHhhhccCCCC
Q psy15051 775 ------HINITSREVMRSQKDVVQ----SF-----------------------PLILMIITEAYSPSLEKVAKYYGTGDT 821 (1065)
Q Consensus 775 ------~ln~~n~~v~~~l~~~lk----~~-----------------------~~~~~ligE~~~~~~~~~~~y~~~~~~ 821 (1065)
.||+.+|+|+++|.+++. ++ .++++++||.+...+.....+ .....
T Consensus 169 ~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~~~-~~~~~ 247 (381)
T d2aaaa2 169 TIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDCPY-QKVLD 247 (381)
T ss_dssp SSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHGGG-GGTSS
T ss_pred ccccCccccccchhhhhHHhhhhhhcccceeeeeeeecccccccHHHHHHHHhcccccccccccCCCchhhhcc-ccccc
Confidence 189999999999999732 21 116789999998866654443 32222
Q ss_pred ccccccccHHHHHHhh-cCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcC-HHHHHHHHHHHHhCCCeEEE
Q psy15051 822 QGTHLSVNYEIMNKFG-ATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYS-PDLVDAMNMLTLLLPGTAVT 899 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~-~~~~kla~~ll~tlpGiP~I 899 (1065)
..+++.+...+...+. .......+...+.......+.....++|++|||++|+++..+ .++++++++++||+||+|||
T Consensus 248 ~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt~pG~P~i 327 (381)
T d2aaaa2 248 GVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFLSDGIPIV 327 (381)
T ss_dssp EEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHHSSSEEEE
T ss_pred cccchhHHHHHHHHHhcCCccHHHHHHHHHhhhhccCCchhhccccccCCchhhhcccCCHHHHHHHHHHHHHcCCCcEe
Confidence 2334444444444442 344667777777777766766666677999999999999887 45789999999999999999
Q ss_pred EcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCc
Q psy15051 900 FAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPS 979 (1065)
Q Consensus 900 yyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~ 979 (1065)
|||+|+|+.+.. +|. +|.+|.|.... ..++
T Consensus 328 y~G~E~g~~g~~-------~p~----------------~r~~~~~~~~~---------------------------~~~~ 357 (381)
T d2aaaa2 328 YAGEEQHYAGGK-------VPY----------------NREATWLSGYD---------------------------TSAE 357 (381)
T ss_dssp ETTTTTTCCCCT-------TTT----------------TCCCGGGGTTC---------------------------TTCH
T ss_pred EcCcccCCCCCC-------Ccc----------------cccccCcCCCc---------------------------cChH
Confidence 999999998752 333 56777776422 2357
Q ss_pred HHHHHHHHHHHHHhcccccCCC
Q psy15051 980 HYSVYKDLTTLRATSGAVRMGD 1001 (1065)
Q Consensus 980 l~~~~r~Li~LRk~~paL~~G~ 1001 (1065)
+++++|+|++|||++|||+.|-
T Consensus 358 l~~~i~~L~~lRk~~~al~~~~ 379 (381)
T d2aaaa2 358 LYTWIATTNAIRKLAIAADSAY 379 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhhChhhcCCC
Confidence 9999999999999999998763
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.7e-47 Score=459.40 Aligned_cols=358 Identities=14% Similarity=0.117 Sum_probs=232.6
Q ss_pred cCChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhccccc-ccHHhhhHHHHHcCcCEEEeCCCCcCCCC----
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLG-LGIIEKIDYLKELGVETLWLTPFYSGPNG---- 625 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~-~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~---- 625 (1065)
..++.||+++||||||||+|+++++|+.|+++ |+|.|.+-. +||++||||||+||||+||||||+++++.
T Consensus 13 ~~~~~~~~~~viYei~vr~F~d~~~d~~~~~~-----G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~ 87 (563)
T d2fhfa5 13 QKTKADLAKMTIHESHIRDLSAWDQTVPAELR-----GKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFS 87 (563)
T ss_dssp CSSHHHHHTCEEEEECHHHHHTTCTTSCGGGT-----TSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCG
T ss_pred cCCCCCHHHcEEEEecchhhhccCCCCccccC-----cChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCcccccc
Confidence 34678999999999999999999999999988 777776543 46999999999999999999999886542
Q ss_pred ------------------------------------------------------------------CCCCcCCCCcccCC
Q psy15051 626 ------------------------------------------------------------------DIGYDISNHTEVGK 639 (1065)
Q Consensus 626 ------------------------------------------------------------------~~GY~~~dy~~idp 639 (1065)
+|||+|.||++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~p 167 (563)
T d2fhfa5 88 DKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEG 167 (563)
T ss_dssp GGCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECS
T ss_pred ccccccccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhcccccC
Confidence 47999999999999
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcc
Q psy15051 640 DFGT-------MEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQ 712 (1065)
Q Consensus 640 ~~Gt-------~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1065)
+||| ++|||+||++||
T Consensus 168 ~~Gt~~d~~~~l~Efk~lV~a~~--------------------------------------------------------- 190 (563)
T d2fhfa5 168 SYATDPEGTARIKEFRTMIQAIK--------------------------------------------------------- 190 (563)
T ss_dssp TTSSCCSTTHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred ccCcCcchhhHHHHHHHHHHHHh---------------------------------------------------------
Confidence 9999 688999999873
Q ss_pred cchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc---ccCCCHHHHHHHHH
Q psy15051 713 NRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH---INITSREVMRSQKD 789 (1065)
Q Consensus 713 ~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~---ln~~n~~v~~~l~~ 789 (1065)
|++|||||||+|+||||.+|+||+.+.........||.+... .+. +..|.. +++.++.++.++.+
T Consensus 191 -------H~rGIkVIlD~V~NHts~~h~wf~~~~~~~~~~~~y~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~d 258 (563)
T d2fhfa5 191 -------QDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNET-TGS----VESATCCSDSAPEHRMFAKLIAD 258 (563)
T ss_dssp -------HTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTT-TCC----BCCTTSSEEBCTTSHHHHHHHHH
T ss_pred -------hccCceeeecCcccccCCCCCchhhcccCCCCCcceeccCCC-CCc----ccCCCCCcccCccchhHHHHHHH
Confidence 899999999999999999999998765432222233333221 111 222322 89999999999887
Q ss_pred HHH--------------------------------hcCCceEEEeecCCCChHHHhhhccCCC-CccccccccHHHHHHh
Q psy15051 790 VVQ--------------------------------SFPLILMIITEAYSPSLEKVAKYYGTGD-TQGTHLSVNYEIMNKF 836 (1065)
Q Consensus 790 ~lk--------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~~-~~~~d~~~~~~~~~~~ 836 (1065)
... ...+++..++|.+............... .......|+..+++.+
T Consensus 259 ~~~~~~~~~~~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~~ 338 (563)
T d2fhfa5 259 SLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAV 338 (563)
T ss_dssp HHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCSCTTTSCBCCTTTTTTSSCEEECHHHHHHH
T ss_pred hhHHHHhhhcccccchhhhhhcchhhhhhhhHHHhhhCcccccccccccccccccccccccccCCcchhHHHhHHHHHHH
Confidence 622 1234678888887652211110000000 0001112333333332
Q ss_pred hcCC---------------------------ChHHHHHHHHH----Hh-hc----------------------------C
Q psy15051 837 GATS---------------------------NAKDLENVVNA----YL-KS----------------------------L 856 (1065)
Q Consensus 837 ~~~~---------------------------~~~~l~~~l~~----~~-~~----------------------------~ 856 (1065)
+... ........+.. .. .. .
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (563)
T d2fhfa5 339 RGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVKRGSEIDYNGAPGGYA 418 (563)
T ss_dssp HCSCTTCCTTHHHHCCCGGGTTTTSCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTSCEEEGGGSEETTEESCCB
T ss_pred Hhccccccccchhhcccccccchhhhhhhhcccchhhhhhhhhhhcccccchhhhhccchhhhhhhcchhhhcccccccc
Confidence 1100 00001010000 00 00 0
Q ss_pred CCCCcccccccCCChhhHhhhcCH------------HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccc
Q psy15051 857 PSGKWSSWMVGGHSITRIATRYSP------------DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYI 924 (1065)
Q Consensus 857 ~~~~~~~~flenHD~~Rl~s~~~~------------~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~ 924 (1065)
......++|++|||+.|+.++++. +++|++++++||+||+||||||||+||++... .+
T Consensus 419 ~~~~~~vnfl~NHD~~r~~~~~~~~~~~~~~~~~~~~~~kla~~~llt~pG~P~IYyGeEiG~t~~~~-~~--------- 488 (563)
T d2fhfa5 419 ADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFT-RD--------- 488 (563)
T ss_dssp SSGGGEEECSCCSSSSCHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCTTC-SC---------
T ss_pred CCccceeeeeccCCcccccccccccCCCcccHHHHHHHHHHHHHHHHHhcCccEEEcCcccCCcCCCC-cc---------
Confidence 011123348999999999877531 25788999999999999999999999976421 00
Q ss_pred cccccccccccCCCCCcCCCCcccc-------cCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccc
Q psy15051 925 FGKDNYLKVCRDGSRVPFQWNDQEN-------AGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAV 997 (1065)
Q Consensus 925 ~~~~~~~~~~rd~~R~~m~W~~~~~-------~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL 997 (1065)
.+.++..+.+|+|..... .+++...+|.+ ..++...+++.|..++.+++++||+||+|||++|||
T Consensus 489 -------~y~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~q~~d~~sl~~~yr~Li~LRk~~pal 560 (563)
T d2fhfa5 489 -------SYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDI-IARVKDAVATPGETELKQMTAFYQELTALRKSSPLF 560 (563)
T ss_dssp -------CTTSHHHHHCCCTTCSCCSCSSSCCCHHHHGGGHHH-HHHHTTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred -------cccCcccccccccccCccCCcccCcccCCCcccccc-ccccccccccccccCHHHHHHHHHHHHHHHhCCHhh
Confidence 112222345555554332 22211112211 113445566667777788999999999999999999
Q ss_pred cCC
Q psy15051 998 RMG 1000 (1065)
Q Consensus 998 ~~G 1000 (1065)
+.|
T Consensus 561 ~~G 563 (563)
T d2fhfa5 561 TLG 563 (563)
T ss_dssp GCC
T ss_pred cCC
Confidence 987
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=4.5e-43 Score=421.95 Aligned_cols=329 Identities=23% Similarity=0.349 Sum_probs=236.1
Q ss_pred cccCChhhcc--cceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC--
Q psy15051 549 VRCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-- 624 (1065)
Q Consensus 549 ~~~~~~~ww~--~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-- 624 (1065)
.+...|.|++ ++++|++++++| +|||+ ||++||||||+||||+||||||++++.
T Consensus 85 ~r~~~~~w~~~~~~~~~~~y~~~f-------gGDl~---------------Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~ 142 (554)
T d1g5aa2 85 ARENNPDWILSNKQVGGVCYVDLF-------AGDLK---------------GLKDKIPYFQELGLTYLHLMPLFKCPEGK 142 (554)
T ss_dssp HHHTCGGGGGCTTCCEEEECHHHH-------HSSHH---------------HHHTTHHHHHHHTCSEEEECCCBCCCSSC
T ss_pred hhhhCCccccCcCceeEEEecccc-------CcCHH---------------HHHHhhHHHHHcCCCEEEECCCCCCCCCC
Confidence 3556788985 679999999999 49999 999999999999999999999999863
Q ss_pred CCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCC
Q psy15051 625 GDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGN 704 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1065)
.+|||+++||++|||+|||++||++||++|
T Consensus 143 sd~GY~v~dy~~Vdp~lGt~edl~~Lv~~a-------------------------------------------------- 172 (554)
T d1g5aa2 143 SDGGYAVSSYRDVNPALGTIGDLREVIAAL-------------------------------------------------- 172 (554)
T ss_dssp STTTTSCSCSSSBCTTTCCHHHHHHHHHHH--------------------------------------------------
T ss_pred CCCCcCcccCCCCCcccCCHHHHHHHHHHH--------------------------------------------------
Confidence 579999999999999999999999999999
Q ss_pred CCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCC-----------CCCCCCCCCC-
Q psy15051 705 QNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGL-----------NGKPGTPPNN- 772 (1065)
Q Consensus 705 ~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~-----------dG~p~~~~~~- 772 (1065)
|++||+||+|+|+||||.+|+||+++..+.+.|.++|+..... ..+|...+.+
T Consensus 173 ---------------H~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
T d1g5aa2 173 ---------------HEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGF 237 (554)
T ss_dssp ---------------HHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTE
T ss_pred ---------------HHCCCEEEEEECcCCCCCCccchhhhhccCCccccceEEcCCCCCCccccCCCcccCCCCCCcce
Confidence 9999999999999999999999999988887787766543221 1111111111
Q ss_pred -------Cc---------cccCCCHHHHHHHHHHHH--------------------------------------------
Q psy15051 773 -------WK---------HINITSREVMRSQKDVVQ-------------------------------------------- 792 (1065)
Q Consensus 773 -------W~---------~ln~~n~~v~~~l~~~lk-------------------------------------------- 792 (1065)
|. .||+.||+|+++|.++++
T Consensus 238 ~~~~~~~~~~~~f~~~~~dln~~np~V~~~~~~~~~~w~~~gvDGfRlDa~~~~~~~~~~~~~n~p~~~~~~~~~~~~~~ 317 (554)
T d1g5aa2 238 SQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMR 317 (554)
T ss_dssp EECTTSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHTTTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHH
T ss_pred eecCCCceeecccCCcccccccCCHHHHHHHHhhhhhhhhccccccccccchhhccccccccccCchhhHHHHHHHHHHh
Confidence 10 199999999999998722
Q ss_pred hcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhc---CCChHHHHHHHHHHhhcCCCCCcccccccCC
Q psy15051 793 SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA---TSNAKDLENVVNAYLKSLPSGKWSSWMVGGH 869 (1065)
Q Consensus 793 ~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~flenH 869 (1065)
...|+++++||.+.. ++.+..|++. ..+++.|++.+...+.. ..+...+...+.... ..+......+|++||
T Consensus 318 ~~~p~~~l~aE~~~~-~~~~~~y~g~---~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~~~~-~~~~~~~~~nfl~~H 392 (554)
T d1g5aa2 318 IAAPAVFFKSEAIVH-PDQVVQYIGQ---DECQIGYNPLQMALLWNTLATREVNLLHQALTYRH-NLPEHTAWVNYVRSH 392 (554)
T ss_dssp HHCTTCEEEECCCSC-HHHHGGGBST---TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSC-CCCTTCEEEEESCCS
T ss_pred hhCCCceeeccccCC-HHHHHHHhCC---CccccccccccchhhhhhcccccHHHHHHHHHhCc-ccCCCCeEEeehhcc
Confidence 134579999999987 7778888875 35678888766654421 224455555555433 334444445699999
Q ss_pred Chhh--------------------Hhh-----h-------------------------------------cCHHHHHHHH
Q psy15051 870 SITR--------------------IAT-----R-------------------------------------YSPDLVDAMN 887 (1065)
Q Consensus 870 D~~R--------------------l~s-----~-------------------------------------~~~~~~kla~ 887 (1065)
|.-. ... . .+.++.+++.
T Consensus 393 D~ig~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~d~~~~~~~~~~~~~~~~~~~~~~r~~la~ 472 (554)
T d1g5aa2 393 DDIGWTFADEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLY 472 (554)
T ss_dssp SCBCCCCCHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTTHHHHHHHHH
T ss_pred cccccccchhhhhhhcccchHHHHHHhhhcccccccccccCcchhccccccccccccchhhccccccchHHHHHHHHHHH
Confidence 9410 000 0 0013677889
Q ss_pred HHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCccc
Q psy15051 888 MLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWT 967 (1065)
Q Consensus 888 ~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~ 967 (1065)
+++|++|||||||||+|+|+.+.. +...||.. ....|..+|..|+|+......
T Consensus 473 alllt~pGiP~IYyGdEiG~~nd~---~~~~d~~~--------~~~~rw~~r~~~~~~~~~~~~---------------- 525 (554)
T d1g5aa2 473 SIALSTGGLPLIYLGDEVGTLNDD---DWSQDSNK--------SDDSRWAHRPRYNEALYAQRN---------------- 525 (554)
T ss_dssp HHHHHSSSEEEEETTGGGTCCCCS---SGGGCTTT--------TTCGGGGGCCCCCHHHHTTTT----------------
T ss_pred HHHHHcCChhhheechhhCCCCCh---hhccCCCC--------CCCchhhccccCCHHHHHhhh----------------
Confidence 999999999999999999998642 11112210 112344567777775432110
Q ss_pred ccHHHhhcCCCcHHHHHHHHHHHHHhcccccCC
Q psy15051 968 LNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMG 1000 (1065)
Q Consensus 968 ~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G 1000 (1065)
.......++++++|+|++|||++|||+.|
T Consensus 526 ----d~~s~~~~v~~~~r~Li~lRk~~pAf~~G 554 (554)
T d1g5aa2 526 ----DPSTAAGQIYQDLRHMIAVRQSNPRFDGG 554 (554)
T ss_dssp ----CTTSHHHHHHHHHHHHHHHHHHCGGGCSS
T ss_pred ----CcccHHHHHHHHHHHHHHHHhhCHhhcCC
Confidence 00011234899999999999999999876
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-43 Score=400.59 Aligned_cols=309 Identities=18% Similarity=0.221 Sum_probs=208.5
Q ss_pred hhcccceEEEEeccccc-CcCCCCCCCCCCcccchhhhcccccccHHhhh-HHHHHcCcCEEEeCCCCcCCC-CCCCCcC
Q psy15051 555 EWWKNTVIYQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKI-DYLKELGVETLWLTPFYSGPN-GDIGYDI 631 (1065)
Q Consensus 555 ~ww~~~vIYei~v~~F~-d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~-~~~GY~~ 631 (1065)
.|-+..+||||||++|+ ++++++.|||+ ||++|| ||||+||||+||||||++++. .+|||++
T Consensus 12 ~~~~~~~iYe~~~~~f~~~~~~~~~g~~~---------------gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~ 76 (396)
T d1m7xa3 12 QFDAPISIYEVHLGSWRRHTDNNFWLSYR---------------ELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQP 76 (396)
T ss_dssp STTSCCEEEEECTTSSCBCTTTCCBCCHH---------------HHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSC
T ss_pred CCCCCcEEEEEccCccCCCCCCCCCCCHH---------------HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCc
Confidence 34444589999999996 67788899999 999997 999999999999999999875 4699999
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCc
Q psy15051 632 SNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGN 711 (1065)
Q Consensus 632 ~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1065)
.||++|||+|||++|||+||++|
T Consensus 77 ~d~~~vdp~~Gt~~d~~~LV~~a--------------------------------------------------------- 99 (396)
T d1m7xa3 77 TGLYAPTRRFGTRDDFRYFIDAA--------------------------------------------------------- 99 (396)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHH---------------------------------------------------------
T ss_pred CcCCCcCcccCCHHHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999999999999
Q ss_pred ccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc--ccCCCHHHHHHHHH
Q psy15051 712 QNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH--INITSREVMRSQKD 789 (1065)
Q Consensus 712 ~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~--ln~~n~~v~~~l~~ 789 (1065)
|++||+||+|+|+||++..|.|+..... .+++...+... .....|.. +|+.+|+++.++.+
T Consensus 100 --------H~~gi~VilD~V~NH~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
T d1m7xa3 100 --------HAAGLNVILDWVPGHFPTDDFALAEFDG-----TNLYEHSDPRE----GYHQDWNTLIYNYGRREVSNFLVG 162 (396)
T ss_dssp --------HHTTCEEEEEECTTSCCCSTTSSTTGGG-----SCSSBCC---------------CCCBCTTSHHHHHHHHH
T ss_pred --------hhhhhhhhhcccccccCCcccccccccC-----CccccccCCCC----CCCCCCCCccccCCCchhHHHHHH
Confidence 8888899999999999999999765431 12221111110 01122322 78888888888887
Q ss_pred H--------------------------------------------------------HHhcCCceEEEeecCCCChHHHh
Q psy15051 790 V--------------------------------------------------------VQSFPLILMIITEAYSPSLEKVA 813 (1065)
Q Consensus 790 ~--------------------------------------------------------lk~~~~~~~ligE~~~~~~~~~~ 813 (1065)
+ ++...++.++++|.+...... .
T Consensus 163 ~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~ 241 (396)
T d1m7xa3 163 NALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV-S 241 (396)
T ss_dssp HHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT-T
T ss_pred HHHHHHHHhCCcceeeechhhhccchhcccccccccccccccccchHHHHHHHHHHHHhhhCCCceEEEeecCCCccc-c
Confidence 6 222345788899988763322 1
Q ss_pred hhccCCCCccccccccHHHHHHhh----cCC--ChHHHHHHHHHHhhcCCCC--CcccccccCCChhhHhhhcCH-----
Q psy15051 814 KYYGTGDTQGTHLSVNYEIMNKFG----ATS--NAKDLENVVNAYLKSLPSG--KWSSWMVGGHSITRIATRYSP----- 880 (1065)
Q Consensus 814 ~y~~~~~~~~~d~~~~~~~~~~~~----~~~--~~~~l~~~l~~~~~~~~~~--~~~~~flenHD~~Rl~s~~~~----- 880 (1065)
.+... ....+++.++..+...+. ... ................... .....+..+||..|..+....
T Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d1m7xa3 242 RPQDM-GGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 320 (396)
T ss_dssp BCTTT-TBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred ccccc-cccchhhhhccchhhhhhhhccchhhhhhhhccccchhhhhhhhhhccccccccccccCCCcccccCCCCHHHH
Confidence 11111 112344555544444321 110 0000011111111111111 112237789999988877643
Q ss_pred -HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCC
Q psy15051 881 -DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWL 959 (1065)
Q Consensus 881 -~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl 959 (1065)
++++++++++||+||+||||||||+|+.+.. + .+.+|+|......
T Consensus 321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~-------~------------------~~~~~~w~~~~~~--------- 366 (396)
T d1m7xa3 321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREW-------N------------------HDASLDWHLLEGG--------- 366 (396)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCC-------C------------------TTSCCCGGGGCSS---------
T ss_pred HHHHHHHHHHHHHhCCccEeecccccCCCCCC-------C------------------CCCCCChhhccCc---------
Confidence 3578899999999999999999999998753 1 2245677653311
Q ss_pred CCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccCCCe
Q psy15051 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRMGDY 1002 (1065)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~G~~ 1002 (1065)
....+.+++++|+|++|||++|||+.|+|
T Consensus 367 --------------~~~~~~l~~~~~~L~~lR~~~paL~~~~~ 395 (396)
T d1m7xa3 367 --------------DNWHHGVQRLVRDLNLTYRHHKAMHELDF 395 (396)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHTTCGGGTSCTT
T ss_pred --------------chhhHHHHHHHHHHHHHHHcCHHhhccCC
Confidence 00123589999999999999999999876
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-43 Score=422.27 Aligned_cols=136 Identities=21% Similarity=0.455 Sum_probs=112.6
Q ss_pred cCChhhcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCC------C
Q psy15051 551 CNQKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGP------N 624 (1065)
Q Consensus 551 ~~~~~ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~------~ 624 (1065)
..+|+||+++||||||||+|+++++++.+........+.+.+||+ +||+++|||||+|||||||||||++++ .
T Consensus 75 ~~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~-~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~ 153 (572)
T d1gjwa2 75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTF-FKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGD 153 (572)
T ss_dssp CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCH-HHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSS
T ss_pred CCCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCH-HHHHHhhHHHHHcCCCEEEeCCcccCccccCCCC
Confidence 346899999999999999999998887654442233344444555 699999999999999999999999864 3
Q ss_pred CCCCCcCCCCcccCCC--------CCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccC
Q psy15051 625 GDIGYDISNHTEVGKD--------FGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLN 696 (1065)
Q Consensus 625 ~~~GY~~~dy~~idp~--------~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 696 (1065)
.+|||++.||++|||+ |||++|||+||++|
T Consensus 154 ~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~------------------------------------------ 191 (572)
T d1gjwa2 154 APSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEAC------------------------------------------ 191 (572)
T ss_dssp SCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHH------------------------------------------
T ss_pred CCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHH------------------------------------------
Confidence 4699999999999986 79999999999999
Q ss_pred ccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeec
Q psy15051 697 PVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWK 759 (1065)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~ 759 (1065)
|++||+||||+|+|||+.+|+||.+ +++||.+.
T Consensus 192 -----------------------H~~GI~VIlDvV~NHts~~~~~~~~-------~~~~~~~~ 224 (572)
T d1gjwa2 192 -----------------------HILGIRVILDFIPRTAARDSDLIRE-------HPDWFYWI 224 (572)
T ss_dssp -----------------------HHTTCEEEEEECTTEEETTCGGGTT-------CGGGSCCE
T ss_pred -----------------------HhcCcEEEEEeeecccccCCHHHHh-------Cccccccc
Confidence 8888888888999999999999876 45666554
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=1.4e-42 Score=409.37 Aligned_cols=157 Identities=22% Similarity=0.346 Sum_probs=125.6
Q ss_pred CChhhcccceEEEEecccccCcCC----CCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC---
Q psy15051 552 NQKEWWKNTVIYQILVPSFKDSNN----DGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--- 624 (1065)
Q Consensus 552 ~~~~ww~~~vIYei~v~~F~d~~~----d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--- 624 (1065)
.++.|++++|||||||++|+++++ ++.|||+ ||++||||||+||||+||||||++++.
T Consensus 9 ~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~---------------Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~ 73 (475)
T d1bf2a3 9 KPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYY---------------GAGLKASYLASLGVTAVEFLPVQETQNDAN 73 (475)
T ss_dssp CCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHH---------------HHHHTHHHHHHHTCCEEEESCCBCBSCTTT
T ss_pred CCCCCCcceEEEEEEhhHhccCCCCCCccccCCHH---------------HHHhhhHHHHHcCCCEEEeCCCCcCCCccc
Confidence 456789999999999999999874 4568888 999999999999999999999998753
Q ss_pred ----------CCCCCcCCCCcccCCCC-------CCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhcccc
Q psy15051 625 ----------GDIGYDISNHTEVGKDF-------GTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADK 687 (1065)
Q Consensus 625 ----------~~~GY~~~dy~~idp~~-------Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~ 687 (1065)
.||||+++||++|||+| ||++|||+||++|
T Consensus 74 ~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~a--------------------------------- 120 (475)
T d1bf2a3 74 DVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAF--------------------------------- 120 (475)
T ss_dssp TSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHH---------------------------------
T ss_pred ccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHH---------------------------------
Confidence 35999999999999999 9999999999999
Q ss_pred ccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCC------
Q psy15051 688 FAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDG------ 761 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~------ 761 (1065)
|++||+||+|+|+||++.+|+|+.. .+++.++|.+...
T Consensus 121 --------------------------------H~~GIrVilD~V~NH~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 164 (475)
T d1bf2a3 121 --------------------------------HNAGIKVYMDVVYNHTAEGGTWTSS----DPTTATIYSWRGLDNATYY 164 (475)
T ss_dssp --------------------------------HHTTCEEEEEECCSSCTTCSBSSSS----CSSCBBCSSHHHHHHHHHB
T ss_pred --------------------------------HhcCcEEEEEeccccccCCCccccc----CCCcCccccccCccccccc
Confidence 8899999999999999999999864 3445555544311
Q ss_pred --CCCCCCCC-CCCCc-cccCCCHHHHHHHHHHHH
Q psy15051 762 --LNGKPGTP-PNNWK-HINITSREVMRSQKDVVQ 792 (1065)
Q Consensus 762 --~dG~p~~~-~~~W~-~ln~~n~~v~~~l~~~lk 792 (1065)
..|..... ...+. .||+.||+|++++.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~ 199 (475)
T d1bf2a3 165 ELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLA 199 (475)
T ss_dssp CBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHH
T ss_pred ccCCCccccccCCCccCccchhhhHHHHHHHHHHH
Confidence 11110000 00111 199999999999998843
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=3.1e-42 Score=400.72 Aligned_cols=331 Identities=20% Similarity=0.266 Sum_probs=210.2
Q ss_pred hcccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCC
Q psy15051 556 WWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNH 634 (1065)
Q Consensus 556 ww~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy 634 (1065)
.|+++|||||||++|+++ |||+ ||+++|||||+||||+||||||++++. .+|||++.||
T Consensus 13 ~~~~~viYe~~~~~f~~~-----Gd~~---------------g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~ 72 (420)
T d2bhua3 13 KLADCVFYEVHVGTFTPE-----GTYR---------------AAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAF 72 (420)
T ss_dssp CGGGCCEEEECHHHHSSS-----CSHH---------------HHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEE
T ss_pred CccccEEEEEehhhcCCC-----CCHH---------------HHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccC
Confidence 389999999999999873 9999 999999999999999999999998754 4699999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccc
Q psy15051 635 TEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNR 714 (1065)
Q Consensus 635 ~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
++|||+|||++||++||++|
T Consensus 73 ~~vdp~~G~~~d~~~lv~~a------------------------------------------------------------ 92 (420)
T d2bhua3 73 YAPYAPYGRPEDLMALVDAA------------------------------------------------------------ 92 (420)
T ss_dssp EEECGGGCCHHHHHHHHHHH------------------------------------------------------------
T ss_pred CCcCcccCCHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred hhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCcc-ccCCCHHHHHHHHHHHH-
Q psy15051 715 AESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKH-INITSREVMRSQKDVVQ- 792 (1065)
Q Consensus 715 ~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~-ln~~n~~v~~~l~~~lk- 792 (1065)
|++||+||+|+|+||++.+|+||.... +.+|.... ...|+. ||+.||+|+++|.++++
T Consensus 93 -----H~~gi~VilD~V~NH~~~~~~~~~~~~------~~~~~~~~---------~~~~~~dlN~~np~v~~~~~~~~~~ 152 (420)
T d2bhua3 93 -----HRLGLGVFLDVVYNHFGPSGNYLSSYA------PSYFTDRF---------SSAWGMGLDYAEPHMRRYVTGNARM 152 (420)
T ss_dssp -----HHTTCEEEEEECCSCCCSSSCCHHHHC------GGGEEEEE---------ECSSSEEECTTSHHHHHHHHHHHHH
T ss_pred -----HhccccccccccccccCCCCccccccc------cccccccc---------cccccccccccChHHHHHHHHHhhe
Confidence 999999999999999999999998742 12232111 123333 99999999999999822
Q ss_pred -----------------------------------hcCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhh
Q psy15051 793 -----------------------------------SFPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFG 837 (1065)
Q Consensus 793 -----------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~ 837 (1065)
+..|+++++||.|...+........ ...+...+...+.....
T Consensus 153 Wl~~~GVDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 229 (420)
T d2bhua3 153 WLRDYHFDGLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHL---DGIWTDDFHHETRVTLT 229 (420)
T ss_dssp HHHHHCCSEEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCC---SEEECTHHHHHHHHHHH
T ss_pred eeecccccEEEEeeeeeeccccccccHHHHHHHHHhhcCCceeeecccCCchhhhccccc---ccccccccchhhhhccc
Confidence 2455899999999875554332211 11222233333333221
Q ss_pred cC---------CChHHHHHHHHHHhh---------------cCCCC----CcccccccCCChh-------hHh--hhcCH
Q psy15051 838 AT---------SNAKDLENVVNAYLK---------------SLPSG----KWSSWMVGGHSIT-------RIA--TRYSP 880 (1065)
Q Consensus 838 ~~---------~~~~~l~~~l~~~~~---------------~~~~~----~~~~~flenHD~~-------Rl~--s~~~~ 880 (1065)
.. .....+...+..... ..... ...++|++|||+. |+. ...+.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~ 309 (420)
T d2bhua3 230 GEQEGYYAGYRGGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTL 309 (420)
T ss_dssp CCCSGGGGGCCCSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCH
T ss_pred ccccccccccchhhHHHHHHHhhccccccchhhhhchhhhhcccccccchhheeeeecccccccccccccccccchhhhH
Confidence 11 112223333322110 00000 1123589999972 222 12345
Q ss_pred HHHHHHHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCC-CCCC
Q psy15051 881 DLVDAMNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWL 959 (1065)
Q Consensus 881 ~~~kla~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~-~~wl 959 (1065)
+++|++++++||+||+||||||||+|+..+.....+..++.... ...+|+..+.++.|......+.... .+|.
T Consensus 310 ~~~k~a~~~llt~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (420)
T d2bhua3 310 HEYRGAAALLLTLPMTPLLFQGQEWAASTPFQFFSDHAGELGQA------VSEGRKKEFGGFSGFSGEDVPDPQAEQTFL 383 (420)
T ss_dssp HHHHHHHHHHHHSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHH------HHHHHHHHC---------CCCCTTSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeCChhhCCCCCccccccccchhhcc------ccccccccccCCCccccccCCCcccccccc
Confidence 67899999999999999999999999998642222221111000 0001111222333222221111100 1111
Q ss_pred CCCCCcccccHHHhhcCCCcHHHHHHHHHHHHHhcccccC
Q psy15051 960 PVHPNYWTLNAQAEKKTKPSHYSVYKDLTTLRATSGAVRM 999 (1065)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~paL~~ 999 (1065)
+...++ .+.+...+++++++||+|++|||++|+|+.
T Consensus 384 ~~~~~w----~~~~~~~~~~~~~~yr~Li~lRk~~p~l~~ 419 (420)
T d2bhua3 384 NSKLNW----AEREGGEHARTLRLYRDLLRLRREDPVLHN 419 (420)
T ss_dssp TTSCCS----GGGGSHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred cccCCH----HHhcccCcHHHHHHHHHHHHHHhcCHHHhC
Confidence 111111 122333456899999999999999999974
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=1.4e-41 Score=391.53 Aligned_cols=319 Identities=22% Similarity=0.325 Sum_probs=211.7
Q ss_pred cccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc
Q psy15051 557 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT 635 (1065)
Q Consensus 557 w~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~ 635 (1065)
.+++|||||||++|+++ |||+ ||+++|||||+||||+||||||++++. .+|||+|.||+
T Consensus 9 ~~~~viYe~~v~~f~~~-----Gd~~---------------gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~ 68 (400)
T d1eh9a3 9 KEDLIIYEIHVGTFTPE-----GTFE---------------GVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLY 68 (400)
T ss_dssp SSSCCEEEECTTTSSSS-----CSHH---------------HHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTT
T ss_pred CcCeEEEEEehhhhCCC-----CCHH---------------HHHHHhHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCC
Confidence 34799999999999874 9999 999999999999999999999999874 57999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccch
Q psy15051 636 EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRA 715 (1065)
Q Consensus 636 ~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1065)
+|||+|||++|||+||++|
T Consensus 69 ~vd~~~Gt~~dlk~lv~~~------------------------------------------------------------- 87 (400)
T d1eh9a3 69 AVQNSYGGPEGFRKLVDEA------------------------------------------------------------- 87 (400)
T ss_dssp CBCSTTCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred CcCcccCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999999999
Q ss_pred hhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCCCCcceeecCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHh--
Q psy15051 716 ESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDPYTNYYVWKDGLNGKPGTPPNNWKHINITSREVMRSQKDVVQS-- 793 (1065)
Q Consensus 716 ~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~~~d~y~~~~~~dG~p~~~~~~W~~ln~~n~~v~~~l~~~lk~-- 793 (1065)
|++||+||+|+|+||+|.+|+||.+.. .||......... ...+| +++.||+|+++|.++++.
T Consensus 88 ----h~~gi~VilD~V~NH~s~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~--~~~~np~v~~~l~d~~~~Wl 151 (400)
T d1eh9a3 88 ----HKKGLGVILDVVYNHVGPEGNYMVKLG-------PYFSQKYKTPWG---LTFNF--DDAESDEVRKFILENVEYWI 151 (400)
T ss_dssp ----HHTTCEEEEEECCSCCCSSSCCHHHHS-------CCSCSSCCCSSS---CCCCS--SSTTHHHHHHHHHHHHHHHH
T ss_pred ----HhcCCceeeecccccccCCCcchhhhc-------cccccccccccc---ccccc--ccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999998742 333222111000 11111 677899999999988443
Q ss_pred --cCC------------------------------ceEEEeecCCCChHHHhhhccCCCCccccccccHHHHH----Hhh
Q psy15051 794 --FPL------------------------------ILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMN----KFG 837 (1065)
Q Consensus 794 --~~~------------------------------~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~----~~~ 837 (1065)
+.- +.++++|.....+......... ...++..++..+.. .+.
T Consensus 152 ~~~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 229 (400)
T d1eh9a3 152 KEYNVDGFRLDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKC--GYNIDAQWVDDFHHSIHAYLT 229 (400)
T ss_dssp HHSCCCCEEETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGT--CCCCSEEECHHHHHHHHHHHS
T ss_pred hhcccceEEeechhhhcchhhhhhHHHHHHHHhhhhhhhhhhccccCccccchhhhc--cceeccccccccchhhHhhhc
Confidence 111 2334444433322211111000 11233344444433 222
Q ss_pred cCC-----ChHHHHHHHHHHhhcCC--------------------CCCcccccccCCChh-------hHhhhcCHHHHHH
Q psy15051 838 ATS-----NAKDLENVVNAYLKSLP--------------------SGKWSSWMVGGHSIT-------RIATRYSPDLVDA 885 (1065)
Q Consensus 838 ~~~-----~~~~l~~~l~~~~~~~~--------------------~~~~~~~flenHD~~-------Rl~s~~~~~~~kl 885 (1065)
... ....+...+........ .....+.|++|||+. |+....+.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
T d1eh9a3 230 GERQGYYTDFGNLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKI 309 (400)
T ss_dssp CCCSGGGGGCCSHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHhhhhhccchhHHHHHHHhcccchhhhcccchhhhhhhccccccccchhhhHHHhhhhHHHH
Confidence 110 11112222222211100 011123589999974 4555566778999
Q ss_pred HHHHHHhCCCeEEEEcccccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCC-CCCCCCCCC
Q psy15051 886 MNMLTLLLPGTAVTFAGDELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKA-KSWLPVHPN 964 (1065)
Q Consensus 886 a~~ll~tlpGiP~IyyGdE~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~-~~wl~~~~~ 964 (1065)
|++++|++||+||||||||+|+.+....+++..|+...+...+ ...++.++.+++|.... |... ..|
T Consensus 310 a~a~~l~~pGiP~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~------ 377 (400)
T d1eh9a3 310 AAALYLLSPYIPMIFMGEEYGEENPFYFFSDFSDSKLIQGVRE---GRKKENGQDTDPQDEST---FNASKLSW------ 377 (400)
T ss_dssp HHHHHHSSSSCCEEESSGGGTCCCCCCCCCCCCSTTHHHHHHH---HHHHHTCCCSCTTSHHH---HHTTSCCC------
T ss_pred HHHHHHhCCCCCEEECChhhCCCCCCCchhhcccHHHhhhhHh---hhcCccCCCCCcccccc---cccccCCc------
Confidence 9999999999999999999999987666666666653332211 22345577888886532 1111 111
Q ss_pred cccccHHHhhcCCCcHHHHHHHHHHHHHhccc
Q psy15051 965 YWTLNAQAEKKTKPSHYSVYKDLTTLRATSGA 996 (1065)
Q Consensus 965 ~~~~~~~~~~~~~~~l~~~~r~Li~LRk~~pa 996 (1065)
..+++++++||+|++|||++|.
T Consensus 378 ----------~~~~~~~~~~~~Li~lRk~~pv 399 (400)
T d1eh9a3 378 ----------KIDEEIFSFYKILIKMRKELSI 399 (400)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHTC
T ss_pred ----------cCCHHHHHHHHHHHHHHhHCcC
Confidence 2346799999999999999984
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=5.1e-42 Score=404.72 Aligned_cols=319 Identities=21% Similarity=0.297 Sum_probs=222.9
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
+++||+++|||||+|+||+|++++++|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 2 ~~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk-~LGv~---------------~I~l~-Pi~~~~~~~~GY- 63 (479)
T d1uoka2 2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLK-ELGID---------------VIWLS-PVYESPNDDNGY- 63 (479)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTS-
T ss_pred CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHH-HcCCC---------------EEEEC-CCcCCCCCCCCc-
Confidence 4799999999999999999999999999999999999999 99999 55555 777777789999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 -------~~~d~-------~~vd~~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------- 105 (479)
T d1uoka2 64 -------DISDY-------CKIMNEFGTMEDWDELLHEMHERNMKLM--------MDL-------VVNHTS--------- 105 (479)
T ss_dssp -------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC---------
T ss_pred -------Ccccc-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------ecc-------cccccc---------
Confidence 66666 677779999999999998 699999999 888 999976
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ 261 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (1065)
.+|+||+........ +..++| |.+......+.++...+.
T Consensus 106 -~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (479)
T d1uoka2 106 -DEHNWFIESRKSKDN---------------------------------------KYRDYYIWRPGKEGKEPNNWGAAFS 145 (479)
T ss_dssp -TTSHHHHHHTTCTTC---------------------------------------TTGGGBCEECCSSSSCSSCBBCTTS
T ss_pred -cccchhhhhhhccCC---------------------------------------ccccceeccccccCcCcCCccccCC
Confidence 677787653221100 000000 111111111111111000
Q ss_pred --ccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 262 --RVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 262 --~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
.+...+....++++.|. ..+||||+.||+|| +
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-------------------~~~~dln~~~~~v~---------------------------~ 179 (479)
T d1uoka2 146 GSAWQYDEMTDEYYLHLFS-------------------KKQPDLNWDNEKVR---------------------------Q 179 (479)
T ss_dssp SBSEEEETTTTEEEECSSC-------------------TTSCBBCTTSHHHH---------------------------H
T ss_pred CCccccccccCcceecccC-------------------CCccccccCCHHHH---------------------------H
Confidence 00001122334477777 79999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||++.||||||+|+|++|.++..++...... ......+....++|+++.+++++++.+...++..
T Consensus 180 ~i~~~~~~W~e~gvDGfR~D~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
T d1uoka2 180 DVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEE--------EGYVSGHKHFMNGPNIHKYLHEMNEEVLSHYDIM 251 (479)
T ss_dssp HHHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCC--------SSCBCCGGGTTTCTTHHHHHHHHHHHTGGGSCCE
T ss_pred HHHHHHHHHHHcCCCCcccccceeeeccccCccccccc--------ccccccchhhccChhHHHHHHHHHHHHHhcCccc
Confidence 89999999999999999999999999876654432211 0111234557789999999999998777666677
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH-------------------HHHHHHhcCc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV-------------------VSHFIYCGIV 480 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~-------------------~~~~Wq~~m~ 480 (1065)
+++|......+.... +.+....++++.|+|.+.... .+..++..+.
T Consensus 252 ~~~e~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
T d1uoka2 252 TVGEMPGVTTEEAKL---------------YTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALE 316 (479)
T ss_dssp EEEECTTCCHHHHHH---------------HHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred eeecccCCchHhhhh---------------hccCCCcccccccCcccchhhhhccCcccccchhhhHHhhhHHHHhhhcc
Confidence 777764333222111 112223445566666554221 5677888888
Q ss_pred CCcccchhhcccCccccchhhhhhhhh
Q psy15051 481 DDTSALMVMNERRLSTIASRTMAAMSL 507 (1065)
Q Consensus 481 ~~~~~~~~~~nhd~~r~~sr~~~~~sl 507 (1065)
.......+++|||.+|..+|+++....
T Consensus 317 ~~~~~~~~~~nhd~~~~~~~~~~~~~~ 343 (479)
T d1uoka2 317 HTGWNSLYWNNHDQPRVVSRFGNDGMY 343 (479)
T ss_dssp SSSCCEECSCCTTSCCHHHHTSCSSTT
T ss_pred cccccceecccccccccccccCccHHH
Confidence 777777888999999999999876543
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=2.9e-42 Score=406.76 Aligned_cols=317 Identities=22% Similarity=0.303 Sum_probs=218.7
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRR 103 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~ 103 (1065)
.|+||+++|||||||+||+|++++|+|||+||++|||||| +|||| ++|++ |++.++..+|||
T Consensus 2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk-~LGv~---------------~I~L~-Pi~~~~~~~~GY- 63 (478)
T d1m53a2 2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLK-SLGID---------------AIWIN-PHYDSPNTDNGY- 63 (478)
T ss_dssp CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEECCCTTTTS-
T ss_pred CCcccccCeEEEEecchhcCCCCCCccCHHHHHHhhHHHH-HcCCC---------------EEEEC-CCCCCCCCCCCc-
Confidence 4799999999999999999999999999999999999999 99999 55665 778777789999
Q ss_pred ceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccc
Q psy15051 104 WIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQC 182 (1065)
Q Consensus 104 ~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~ 182 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 64 -------~~~d~-------~~vd~~~Gt~~df~~Lv~~aH~~Gi~Vi--------lD~-------V~NH~~--------- 105 (478)
T d1m53a2 64 -------DISNY-------RQIMKEYGTMEDFDSLVAEMKKRNMRLM--------IDV-------VINHTS--------- 105 (478)
T ss_dssp -------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC---------
T ss_pred -------CccCC-------CCcCcccCCHHHHHHHHHHHHHCCCEEE--------ecc-------cccccc---------
Confidence 56665 667779999999999997 799999999 888 999976
Q ss_pred cCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccccCCcchhhhcc
Q psy15051 183 QGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILERTVSSNSLQALQ 261 (1065)
Q Consensus 183 ~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (1065)
.+|+||+....... .++..+| |.+......+.++.....
T Consensus 106 -~~~~~f~~~~~~~~---------------------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~ 145 (478)
T d1m53a2 106 -DQHPWFIQSKSDKN---------------------------------------NPYRDYYFWRDGKDNQPPNNYPSFFG 145 (478)
T ss_dssp -TTSHHHHHHHHCTT---------------------------------------CTTGGGBCEECCSSSSCSSCCBCTTS
T ss_pred -ccCchhhhcccCCC---------------------------------------CCccccccccCCCcCCCCccccccCC
Confidence 67788865422100 0011111 111110001111000000
Q ss_pred c--cCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 262 R--VYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 262 ~--~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
. +...+....++++.|. ..+||||+.||.|+ +
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-------------------~~~~dln~~~~~V~---------------------------~ 179 (478)
T d1m53a2 146 GSAWQKDAKSGQYYLHYFA-------------------RQQPDLNWDNPKVR---------------------------E 179 (478)
T ss_dssp SBSEEECTTTCCEEECSSC-------------------TTCCBBCTTSHHHH---------------------------H
T ss_pred CCccccccccCcccccCcC-------------------CCCCcccchhHHHH---------------------------H
Confidence 0 0001112334477787 79999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|+++++||+++||||||+|+|+++.+...+++........ .......+++.++++++++..+...++..
T Consensus 180 ~i~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (478)
T d1m53a2 180 DLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKN----------FAEQYTMGPNIHRYIQEMNRKVLSRYDVA 249 (478)
T ss_dssp HHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHT----------HHHHTTCCTTHHHHHHHHHHHTGGGSCCE
T ss_pred HHHHHHHHHHhcCCceeccccceeecccccccccchhhhhc----------cchhhccchhHHHHHHHHHHHHhhccccc
Confidence 89999999999999999999999999876655432211000 00113456889999999977655555677
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH-------------------HHHHHHhcCc
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV-------------------VSHFIYCGIV 480 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~-------------------~~~~Wq~~m~ 480 (1065)
++||......+....+ . +....++++.|+|+++... .+..++..+.
T Consensus 250 ~~~e~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (478)
T d1m53a2 250 TAGEIFGVPLDRSSQF--------------F-DRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVG 314 (478)
T ss_dssp EEEECTTCCGGGTHHH--------------H-CGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHT
T ss_pred eeeeecCCCHHHHHhh--------------h-cccCCccccccchhhhhhhhhhhhhhccccccHHHHHHHHHHHHhhhc
Confidence 7888754443322211 1 1122344556666544211 5667777777
Q ss_pred CCcccchhhcccCccccchhhhhhhhh
Q psy15051 481 DDTSALMVMNERRLSTIASRTMAAMSL 507 (1065)
Q Consensus 481 ~~~~~~~~~~nhd~~r~~sr~~~~~sl 507 (1065)
..++..+++.|||.+|..+|++++...
T Consensus 315 ~~~~~~~~~~nhd~~R~~~~~~~~~~~ 341 (478)
T d1m53a2 315 KYGWNTFFLDNHDNPRAVSHFGDDRPQ 341 (478)
T ss_dssp TTCCBEECSCCTTSCCHHHHHSCCSTT
T ss_pred ccccceeeccCCCCcccccccCCchHH
Confidence 777888888999999999999977554
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=4.3e-37 Score=350.71 Aligned_cols=298 Identities=17% Similarity=0.152 Sum_probs=196.0
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCC--CCCCCcCCCCc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPN--GDIGYDISNHT 635 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~--~~~GY~~~dy~ 635 (1065)
++.||+|.+--.. +++.|.++ ||++||||||+||||+||||||+++.+ .+|||++.||+
T Consensus 8 ~~~~~~q~f~w~~----~~~~~~~~---------------gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~ 68 (361)
T d1mxga2 8 EGGVIMQAFYWDV----PGGGIWWD---------------HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYF 68 (361)
T ss_dssp GTCCEEECCCTTC----CCSSCHHH---------------HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETT
T ss_pred cCCEEEEeeecCC----CCCCchHH---------------HHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCccccc
Confidence 5678888755221 12234456 999999999999999999999999654 46999999998
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCC
Q psy15051 636 ---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQN 706 (1065)
Q Consensus 636 ---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 706 (1065)
+|||+|||++||++||++|
T Consensus 69 ~~~~~~~~~~vd~~~Gt~~d~~~LV~~a---------------------------------------------------- 96 (361)
T d1mxga2 69 DLGEYYQKGTVETRFGSKEELVRLIQTA---------------------------------------------------- 96 (361)
T ss_dssp CSSCSCBTTBSSCSSCCHHHHHHHHHHH----------------------------------------------------
T ss_pred ccCccccccCCCCCCCCHHHHHHHHHHH----------------------------------------------------
Confidence 6999999999999999999
Q ss_pred CccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc----------CCC-CCcceeecCCC-CCCCCCCCCCCc
Q psy15051 707 WRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK----------IDP-YTNYYVWKDGL-NGKPGTPPNNWK 774 (1065)
Q Consensus 707 ~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~----------~~~-~~d~y~~~~~~-dG~p~~~~~~W~ 774 (1065)
|++||+||||+|+||++..++++...... ... ...+..+..+. ..........+.
T Consensus 97 -------------H~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (361)
T d1mxga2 97 -------------HAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFP 163 (361)
T ss_dssp -------------HHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCTTSC
T ss_pred -------------HHCCCEEEEEeeeccccCCccccCCccccccccccccccCCCCCccccccCcccccccccccccCcc
Confidence 88888888888888888877776543210 000 00111000000 000000001122
Q ss_pred cccCCCHHHHHHHHHH-------HHhc-------------C----------CceEEEeecCCCChHHHhhhccCCCCccc
Q psy15051 775 HINITSREVMRSQKDV-------VQSF-------------P----------LILMIITEAYSPSLEKVAKYYGTGDTQGT 824 (1065)
Q Consensus 775 ~ln~~n~~v~~~l~~~-------lk~~-------------~----------~~~~ligE~~~~~~~~~~~y~~~~~~~~~ 824 (1065)
.+++.++.++.++.+. ++++ . +..+++||.|..++..+..+........+
T Consensus 164 d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~ 243 (361)
T d1mxga2 164 DICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGAKVF 243 (361)
T ss_dssp BBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTSEEE
T ss_pred cccCCcchhHHHHHHHHHHHhhhhhhcCCcceeecchhhCCHHHHHHHHhhcCCceecccccCCHHHHhhhhhccCCccc
Confidence 2888999988887542 2221 1 15678999999877777766554333445
Q ss_pred cccccHHHHHHhhcCCChHHHHHHHHHHhhcCC-CCCcccccccCCChhhHhhhcCHHHHHHHHHHHHhCCCeEEEEccc
Q psy15051 825 HLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP-SGKWSSWMVGGHSITRIATRYSPDLVDAMNMLTLLLPGTAVTFAGD 903 (1065)
Q Consensus 825 d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~flenHD~~Rl~s~~~~~~~kla~~ll~tlpGiP~IyyGd 903 (1065)
|+.+...+.+++... ....+...+........ .....++|++|||++|+.++ ++|++++||+||+|+||||+
T Consensus 244 df~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~------~~a~a~llt~pGiP~iyYGd 316 (361)
T d1mxga2 244 DFPLYYKMDEAFDNN-NIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNK------YPAYAFILTYEGQPVIFYRD 316 (361)
T ss_dssp CHHHHHHHHHHHTTT-CHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCH------HHHHHHHHHSSSEEEEEHHH
T ss_pred cchHHHHHHHHHhcC-ChHHHHHHHhhccccccCCHHHheeeCcccCCcccccH------HHHHHHHHcCCCccEEEeCC
Confidence 666555666555332 33333333332222221 22334469999999998763 57888999999999999999
Q ss_pred ccCccCCCCccCCCCCccccccccccccccccCCCCCcCCCCcccccCCCCCCCCCCCCCCcccccHHHhhcCCCcHHHH
Q psy15051 904 ELGMESPILRYEDQRDPEGYIFGKDNYLKVCRDGSRVPFQWNDQENAGFSKAKSWLPVHPNYWTLNAQAEKKTKPSHYSV 983 (1065)
Q Consensus 904 E~G~~~~~~~~~~~~Dp~~~~~~~~~~~~~~rd~~R~~m~W~~~~~~gFs~~~~wl~~~~~~~~~~~~~~~~~~~~l~~~ 983 (1065)
|.+.... +-
T Consensus 317 ~~~~~~~-----------------------------------------------------------------------~~ 325 (361)
T d1mxga2 317 FEEWLNK-----------------------------------------------------------------------DK 325 (361)
T ss_dssp HHTTSCH-----------------------------------------------------------------------HH
T ss_pred CcccCCc-----------------------------------------------------------------------HH
Confidence 8643221 12
Q ss_pred HHHHHHHHHhcccccCCCeEEEccCCcEEEEEEEcCC
Q psy15051 984 YKDLTTLRATSGAVRMGDYKISTPNNYVFILTRTEGS 1020 (1065)
Q Consensus 984 ~r~Li~LRk~~paL~~G~~~~l~~~~~viaf~R~~~~ 1020 (1065)
+++|+.+|+ +++.|.++.+..++++++|.|..++
T Consensus 326 ~~~l~~~~~---~~~~g~~~~~~~~~d~~~f~R~gd~ 359 (361)
T d1mxga2 326 LINLIWIHD---HLAGGSTTIVYYDNDELIFVRNGDS 359 (361)
T ss_dssp HHHHHHHHH---HTCCSCEEEEEECSSEEEEEECCCS
T ss_pred HHHHHHHHH---HhcCCCeEEEEECCCEEEEEeCCCC
Confidence 356666666 4678999999999999999997544
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=2.2e-37 Score=372.21 Aligned_cols=284 Identities=14% Similarity=0.128 Sum_probs=202.8
Q ss_pred ccCchhhhc--ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc--
Q psy15051 21 RCNQKEWWK--NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA-- 96 (1065)
Q Consensus 21 ~~~~~~w~~--~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~-- 96 (1065)
+...|.|++ +.++|++|+++|. |||+||++|||||| +||||+| |++ |++.++
T Consensus 86 r~~~~~w~~~~~~~~~~~y~~~fg-------GDl~Gi~~kLdYLk-~LGVt~I---------------~L~-Pi~~~p~~ 141 (554)
T d1g5aa2 86 RENNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQ-ELGLTYL---------------HLM-PLFKCPEG 141 (554)
T ss_dssp HHTCGGGGGCTTCCEEEECHHHHH-------SSHHHHHTTHHHHH-HHTCSEE---------------EEC-CCBCCCSS
T ss_pred hhhCCccccCcCceeEEEeccccC-------cCHHHHHHhhHHHH-HcCCCEE---------------EEC-CCCCCCCC
Confidence 455678986 6799999999995 99999999999999 9999944 444 555553
Q ss_pred ccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcccc
Q psy15051 97 VKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCL 175 (1065)
Q Consensus 97 ~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~ 175 (1065)
..+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+|||+
T Consensus 142 ~sd~GY--------~v~dy-------~~Vdp~lGt~edl~~Lv~~aH~rGI~Vi--------lD~-------V~NHts-- 189 (554)
T d1g5aa2 142 KSDGGY--------AVSSY-------RDVNPALGTIGDLREVIAALHEAGISAV--------VDF-------IFNHTS-- 189 (554)
T ss_dssp CSTTTT--------SCSCS-------SSBCTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE--
T ss_pred CCCCCc--------CcccC-------CCCCcccCCHHHHHHHHHHHHHCCCEEE--------EEE-------CcCCCC--
Confidence 357999 66666 677779999999999997 799999999 887 888876
Q ss_pred ccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc--ccccc-----
Q psy15051 176 TDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY--WGDIL----- 248 (1065)
Q Consensus 176 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----- 248 (1065)
.+|+||+....... ++.++| |.+..
T Consensus 190 --------~~h~w~~~~~~~~~----------------------------------------~~~~~~~~~~d~~~~~~~ 221 (554)
T d1g5aa2 190 --------NEHEWAQRCAAGDP----------------------------------------LFDNFYYIFPDRRMPDQY 221 (554)
T ss_dssp --------TTSHHHHHHHTTCG----------------------------------------GGTTSBCEESSSHHHHHH
T ss_pred --------CCccchhhhhccCC----------------------------------------ccccceEEcCCCCCCccc
Confidence 77788866433211 111111 11100
Q ss_pred cccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCcccc
Q psy15051 249 ERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTV 328 (1065)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~ 328 (1065)
.......+.......+....+.+++++.|. ..|||||++||.|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-------------------~~~~dln~~np~V~----------------- 265 (554)
T d1g5aa2 222 DRTLREIFPDQHPGGFSQLEDGRWVWTTFN-------------------SFQWDLNYSNPWVF----------------- 265 (554)
T ss_dssp TTTCCCSSTTTCSTTEEECTTSCEEECSSS-------------------TTEEEBCTTSHHHH-----------------
T ss_pred cCCCcccCCCCCCcceeecCCCceeecccC-------------------CcccccccCCHHHH-----------------
Confidence 000000000000000000112455688888 79999999999996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHH
Q psy15051 329 VDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKW 408 (1065)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 408 (1065)
++|+++++||+++||||||+|++++++|+.+ ..|.++||+|+++++|
T Consensus 266 ----------~~~~~~~~~w~~~gvDGfRlDa~~~~~~~~~-----------------------~~~~n~p~~~~~~~~~ 312 (554)
T d1g5aa2 266 ----------RAMAGEMLFLANLGVDILRMDAVAFIWKQMG-----------------------TSCENLPQAHALIRAF 312 (554)
T ss_dssp ----------HHHHHHHHHHHTTTCSEEEETTGGGSCCCTT-----------------------SCSSSCHHHHHHHHHH
T ss_pred ----------HHHHhhhhhhhhccccccccccchhhccccc-----------------------cccccCchhhHHHHHH
Confidence 8899999999999999999999999999542 1288999999999999
Q ss_pred HHHHHhh-CCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------HHHHHHh
Q psy15051 409 RTLVEKF-GNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------VSHFIYC 477 (1065)
Q Consensus 409 r~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------~~~~Wq~ 477 (1065)
|+.++.. |+..+++|+.+...+...++ | . .++++.|+|.+.... .+..|..
T Consensus 313 ~~~~~~~~p~~~l~aE~~~~~~~~~~y~-------g---------~--~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~ 374 (554)
T d1g5aa2 313 NAVMRIAAPAVFFKSEAIVHPDQVVQYI-------G---------Q--DECQIGYNPLQMALLWNTLATREVNLLHQALT 374 (554)
T ss_dssp HHHHHHHCTTCEEEECCCSCHHHHGGGB-------S---------T--TSBSEEECHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhCCCceeeccccCCHHHHHHHh-------C---------C--CccccccccccchhhhhhcccccHHHHHHHHH
Confidence 9988875 99999999988776655544 2 1 467899999887654 4566665
Q ss_pred cCc---CCcccchhhcccCcc
Q psy15051 478 GIV---DDTSALMVMNERRLS 495 (1065)
Q Consensus 478 ~m~---~~~~~~~~~~nhd~~ 495 (1065)
..+ +++.+-.++.|||.-
T Consensus 375 ~~~~~~~~~~~~nfl~~HD~i 395 (554)
T d1g5aa2 375 YRHNLPEHTAWVNYVRSHDDI 395 (554)
T ss_dssp HSCCCCTTCEEEEESCCSSCB
T ss_pred hCcccCCCCeEEeehhccccc
Confidence 543 334444456899864
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=100.00 E-value=3.2e-37 Score=351.77 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=93.1
Q ss_pred ccceEEEEecccccCcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcC-CCCCCCCcCCCCcc
Q psy15051 558 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTE 636 (1065)
Q Consensus 558 ~~~vIYei~v~~F~d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~-~~~~~GY~~~dy~~ 636 (1065)
++.|+|+++.|+|. .|||+ ||++||||||+||||+||||||+++ +..+|||++.||++
T Consensus 2 ~~~~~~~~y~d~~~------~Gdl~---------------g~~~~Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~ 60 (434)
T d1r7aa2 2 KNKVQLITYADRLG------DGTIK---------------SMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTK 60 (434)
T ss_dssp CSSCEEEECSSSBS------SSSHH---------------HHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEE
T ss_pred CCceEEEEecCCCC------CCCHH---------------HHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccc
Confidence 57899999998884 39999 9999999999999999999999985 45679999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchh
Q psy15051 637 VGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAE 716 (1065)
Q Consensus 637 idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1065)
|||+|||++|||+| +
T Consensus 61 vdp~~Gt~~d~k~L---~-------------------------------------------------------------- 75 (434)
T d1r7aa2 61 VDERLGSWDDVAEL---S-------------------------------------------------------------- 75 (434)
T ss_dssp ECTTTCCHHHHHHH---H--------------------------------------------------------------
T ss_pred cCcccCCHHHHHHH---H--------------------------------------------------------------
Confidence 99999999999998 4
Q ss_pred hhhhhcCcEEEEEeccCCCCCCchhhHhhhcc--CCCCCccee
Q psy15051 717 SMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK--IDPYTNYYV 757 (1065)
Q Consensus 717 ~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~--~~~~~d~y~ 757 (1065)
+||+||||+|+||||..|+||.+.... .+.|.++|.
T Consensus 76 -----rGi~VIlDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~ 113 (434)
T d1r7aa2 76 -----KTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFL 113 (434)
T ss_dssp -----TTSEEEEEEECSEEETTSHHHHHHHHHGGGSTTGGGBC
T ss_pred -----hCCeeeEEecccccccccchhhhhhhccCCCccccccc
Confidence 266788888899999999999887543 344555554
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=7.1e-37 Score=353.96 Aligned_cols=238 Identities=17% Similarity=0.110 Sum_probs=158.0
Q ss_pred chhhhcccceEEEecccccCcCCCCc---------------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGI---------------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTI 82 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~---------------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~ 82 (1065)
.++||+++|||||+|+||+|+++++. |||+||++|||||| +||||+||++|+.++...
T Consensus 2 ~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~-~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLK-QLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHH-HHTCCEEEECCCEEECSS
T ss_pred CchhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHHHHHH-HcCCCEEEeCccccCCcc
Confidence 36899999999999999998875432 99999999999999 999997777776553220
Q ss_pred eeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccc
Q psy15051 83 YISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIE 161 (1065)
Q Consensus 83 ~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~ 161 (1065)
........+||| ++.+| ++|||+|||++||++||+ ||++||+|| +||
T Consensus 81 --------~~~~~~~~~~gY--------~~~d~-------~~id~~~Gt~~d~k~Lv~~~H~~Gi~Vi--------lD~- 128 (407)
T d1qhoa4 81 --------LAGTDNTGYHGY--------WTRDF-------KQIEEHFGNWTTFDTLVNDAHQNGIKVI--------VDF- 128 (407)
T ss_dssp --------CSSTTCCCTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE-
T ss_pred --------cCCCCCCCCCce--------eeeec-------CCCCCCCCCHHHHHHHHHHhhhccccee--------ecc-
Confidence 111123466888 44444 555568999999999998 699999999 898
Q ss_pred cccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCc
Q psy15051 162 SLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSE 241 (1065)
Q Consensus 162 ~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1065)
|+||++ ..|+|++........+-.+ .+.. .++.. +...
T Consensus 129 ------V~NH~s----------~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~----------------~~~~ 166 (407)
T d1qhoa4 129 ------VPNHST----------PFKANDSTFAEGGALYNNG---TYMG-------NYFDD----------------ATKG 166 (407)
T ss_dssp ------CTTEEE----------EEBTTBTTSTTTTCEEETT---EEEE-------CSSSC----------------TTTC
T ss_pred ------cccccc----------CCccccccccccCcccccC---cccc-------ccccc----------------cccc
Confidence 999976 4445554322211111000 0000 00000 0000
Q ss_pred ccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 242 KYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
.+... ....+|.......+ ..+.+.+. ..|||||++||+|+
T Consensus 167 ~~~~~----~~~~~~~~~~~~~~------~~~~~~~~-------------------~~~~dln~~n~~v~---------- 207 (407)
T d1qhoa4 167 YFHHN----GDISNWDDRYEAQW------KNFTDPAG-------------------FSLADLSQENGTIA---------- 207 (407)
T ss_dssp CBCCS----CBCSCTTCHHHHHH------SBCEETTT-------------------EEEEEBCTTSHHHH----------
T ss_pred ccccc----CCCCCccccccccc------ccccCCcc-------------------ccCchhhhhhhhHH----------
Confidence 00000 00111111111111 11244444 57899999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhH
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPET 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~ 401 (1065)
++++++++||++.||||||+|+++++.+
T Consensus 208 -----------------~~~~~~~~~w~~~gvDGfR~D~~~~~~~----------------------------------- 235 (407)
T d1qhoa4 208 -----------------QYLTDAAVQLVAHGADGLRIDAVKHFNS----------------------------------- 235 (407)
T ss_dssp -----------------HHHHHHHHHHHHTTCCEEEETTGGGSCH-----------------------------------
T ss_pred -----------------HHHHHhHHHHhhhcccccccccccccch-----------------------------------
Confidence 8899999999999999999999999854
Q ss_pred HHHHHHHHHHHHhhCCccCCCCCCccc
Q psy15051 402 YEMLYKWRTLVEKFGNQSADRQPSCAD 428 (1065)
Q Consensus 402 ~~~~~~~r~~~d~~~~~~~~~~~~~~~ 428 (1065)
+++++|++.+.+.++..++||.....
T Consensus 236 -~f~~~~~~~i~~~~~~~~~gE~~~~~ 261 (407)
T d1qhoa4 236 -GFSKSLADKLYQKKDIFLVGEWYGDD 261 (407)
T ss_dssp -HHHHHHHHHHHHHCCCEEEECCCCCC
T ss_pred -hHHHHHHHHHHhccCcceeeeecCCC
Confidence 78899988888888888999975433
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=3.9e-36 Score=344.13 Aligned_cols=213 Identities=19% Similarity=0.259 Sum_probs=154.0
Q ss_pred chhhhcccceEEEecccccCcCCCCc-------------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCccee
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGI-------------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYI 84 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~-------------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~ 84 (1065)
.|+||+++|||||+||||+|+++++. |||+||++|||||| +||||
T Consensus 5 ~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~-~LGv~--------------- 68 (382)
T d1j0ha3 5 APDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLV-DLGIT--------------- 68 (382)
T ss_dssp CCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHH-HHTCC---------------
T ss_pred CCcchhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHH-HcCCC---------------
Confidence 57999999999999999999887654 99999999999999 99999
Q ss_pred eecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccc
Q psy15051 85 SFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESL 163 (1065)
Q Consensus 85 ~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~ 163 (1065)
++|++ |+++++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 69 ~i~L~-Pi~~~~-~~~gy--------~~~d~-------~~vd~~~Gt~~~~~~lv~~aH~~Gi~Vi--------lD~--- 120 (382)
T d1j0ha3 69 GIYLT-PIFRSP-SNHKY--------DTADY-------FEVDPHFGDKETLKTLIDRCHEKGIRVM--------LDA--- 120 (382)
T ss_dssp EEEEC-CCEECS-SSSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE---
T ss_pred EEEeC-CCCcCC-cccCC--------Ccccc-------cccCCCCCCHHHHHHHHHHhhhccceEE--------EEe---
Confidence 44444 565554 57899 55555 667779999999999998 799999999 887
Q ss_pred cccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q psy15051 164 FSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY 243 (1065)
Q Consensus 164 ~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1065)
|+||++ .+|+||+....+.. ......|+
T Consensus 121 ----V~NH~~----------~~~~~~~~~~~~~~--------------~~~~~~~~------------------------ 148 (382)
T d1j0ha3 121 ----VFNHCG----------YEFAPFQDVWKNGE--------------SSKYKDWF------------------------ 148 (382)
T ss_dssp ----CCSBCC----------TTCHHHHHHHHHGG--------------GCTTGGGB------------------------
T ss_pred ----eecccc----------cccccchhhhccCC--------------ccccCCcc------------------------
Confidence 888855 56666654211100 00011111
Q ss_pred ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCC
Q psy15051 244 WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPS 323 (1065)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~ 323 (1065)
..... ............+.|. ..+||||+.||+||
T Consensus 149 ~~~~~--------------~~~~~~~~~~~~~~~~-------------------~~~~dln~~n~~vr------------ 183 (382)
T d1j0ha3 149 HIHEF--------------PLQTEPRPNYDTFAFV-------------------PQMPKLNTANPEVK------------ 183 (382)
T ss_dssp CBSSS--------------SCCCSSSCSBCBSTTC-------------------TTSBBBCTTSHHHH------------
T ss_pred ccccc--------------cccccccccccccccC-------------------CCCcccccChHHHH------------
Confidence 00000 0000001112244555 68999999999997
Q ss_pred CccccccchhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHH
Q psy15051 324 CQTTVVDCQMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETY 402 (1065)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 402 (1065)
++|++++++|++ .||||||+|+|+++.+
T Consensus 184 ---------------~~l~~~~~~wi~~~giDGfR~Da~~~~~~------------------------------------ 212 (382)
T d1j0ha3 184 ---------------RYLLDVATYWIREFDIDGWRLDVANEIDH------------------------------------ 212 (382)
T ss_dssp ---------------HHHHHHHHHHHHHHCCCEEEETTGGGSCH------------------------------------
T ss_pred ---------------HHHHHHHHhHhhhccccEEEecchhhcch------------------------------------
Confidence 889999999996 5999999999999965
Q ss_pred HHHHHHHHHHHh-hCCccCCCCCCccc
Q psy15051 403 EMLYKWRTLVEK-FGNQSADRQPSCAD 428 (1065)
Q Consensus 403 ~~~~~~r~~~d~-~~~~~~~~~~~~~~ 428 (1065)
++++++++.+.+ .|+..+++|.....
T Consensus 213 ~~~~~~~~~~~~~~p~~~~i~e~~~~~ 239 (382)
T d1j0ha3 213 EFWREFRQEVKALKPDVYILGEIWHDA 239 (382)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCSSCC
T ss_pred hhhhhhhhhhhccCCCccccccccccc
Confidence 677788665554 58888888875443
|
| >d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclomaltodextrinase, central domain species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=100.00 E-value=1.1e-35 Score=344.74 Aligned_cols=292 Identities=14% Similarity=0.137 Sum_probs=188.5
Q ss_pred hhhhcccceEEEecccccCcC-------------------CCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceee
Q psy15051 25 KEWWKNTVIYQILVPSFKDSN-------------------NDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYIS 85 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~-------------------~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~ 85 (1065)
+.||+++||||||||||.|+| +.+.|||+||++|||||| +||||+||++|+.++..
T Consensus 6 ~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kLdyl~-~LGv~~I~l~Pi~~~~~---- 80 (422)
T d1h3ga3 6 QGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIA-GLGFTQLWPTPLVENDA---- 80 (422)
T ss_dssp CCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTHHHHH-HHTCCEEEECCCEECCC----
T ss_pred CCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhHHHHH-HCCCCEEEeCCcccCCC----
Confidence 469999999999999999876 334599999999999999 99999655555544221
Q ss_pred ecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccccc
Q psy15051 86 FWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLF 164 (1065)
Q Consensus 86 ~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~ 164 (1065)
.+..+||| ++.+| ++|||+|||++||++||+ ||++||+|| +||
T Consensus 81 ---------~~~~~~GY--------~~~d~-------~~vd~~~Gt~~df~~lv~~~H~~Gi~Vi--------lD~---- 124 (422)
T d1h3ga3 81 ---------AAYSYHGY--------AATDH-------YRIDPRYGSNEDFVRLSTEARKRGMGLI--------QDV---- 124 (422)
T ss_dssp ---------SSCGGGCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE----
T ss_pred ---------CCCCCCCC--------Ccccc-------CCcccccCCHHHHHHHHHHHHHhCcccc--------ccC----
Confidence 12357888 55555 566668999999999997 799999999 887
Q ss_pred ccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccc
Q psy15051 165 STKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYW 244 (1065)
Q Consensus 165 ~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1065)
|+||++ .+|+||+..+.... . .+ .+ ... + ..... ...
T Consensus 125 ---V~NH~~----------~~~~~~~~~~~~~~--~-----~~--~~-----~~~------~-~~~~~---------~~~ 161 (422)
T d1h3ga3 125 ---VLSHIG----------KHHWWMKDLPTPDW--I-----NY--GG-----KFV------P-TQHHR---------VAV 161 (422)
T ss_dssp ---CCSBCC----------TTSGGGGSCSSTTS--B-----SC--CS-----SCC------B-CCCCG---------GGG
T ss_pred ---cccccc----------ccchhhcccccccc--c-----cc--cc-----ccc------c-ccccc---------ccc
Confidence 888876 66778876443210 0 00 00 000 0 00000 000
Q ss_pred cccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Q psy15051 245 GDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSC 324 (1065)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~ 324 (1065)
.+ .-.+......++ .+.+. ..|||||+.||+||
T Consensus 162 ~~------~~~~~~~~~~~~---------~~~~~-------------------~~~~dln~~n~~vr------------- 194 (422)
T d1h3ga3 162 QD------PYAAQADSENFT---------KGWFV-------------------EGMPDLNQTNPLVA------------- 194 (422)
T ss_dssp SC------TTCCHHHHHHHH---------HSBSS-------------------TTSCBBCTTSHHHH-------------
T ss_pred cc------cccccCccccee---------ecccc-------------------cCccccccccHHHH-------------
Confidence 00 000111223333 55555 68999999999997
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHH
Q psy15051 325 QTTVVDCQMFCYEITLLLCILEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403 (1065)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 403 (1065)
++|++++++|++. ||||||+|+++++.+ +
T Consensus 195 --------------~~~~~~~~~w~~~~gvDGfR~Da~~~~~~------------------------------------~ 224 (422)
T d1h3ga3 195 --------------NYLIQNNIWWIEYAGLSGLRIDTYGYSDG------------------------------------A 224 (422)
T ss_dssp --------------HHHHHHHHHHHHHHTCSEEEETTGGGSCH------------------------------------H
T ss_pred --------------HHHhhhHHHHhhheeeeeeeecccccccc------------------------------------h
Confidence 8899999999985 999999999988743 7
Q ss_pred HHHHHHHHHH-hhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH------------
Q psy15051 404 MLYKWRTLVE-KFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV------------ 470 (1065)
Q Consensus 404 ~~~~~r~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~------------ 470 (1065)
++++++..+. ..|+..+++|........+......... ... ....++..++|.+....
T Consensus 225 f~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 295 (422)
T d1h3ga3 225 FLTEYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGKAN-----FDG----YTSHLPSLMDFPLVDAMRNALSKTGEENG 295 (422)
T ss_dssp HHHHHHHHHHHHCTTCEEEECCCCSCHHHHHTTSTTCCC-----TTC----CCCCCCEEBCHHHHHHHHHHHHCTTCSST
T ss_pred hhhhhhhhhhhccccceEEeeccccchhhhhhhcccccc-----ccc----cccchhhhhhhhHHHHHHHHHhhccccch
Confidence 7888866554 4589999999866555544433111100 000 11345566777654332
Q ss_pred ---HHHHHHhc--CcCCcccchhhcccCccccchhhhhhhh
Q psy15051 471 ---VSHFIYCG--IVDDTSALMVMNERRLSTIASRTMAAMS 506 (1065)
Q Consensus 471 ---~~~~Wq~~--m~~~~~~~~~~~nhd~~r~~sr~~~~~s 506 (1065)
+...+... .+.......+.+|||.+|.++++++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~ 336 (422)
T d1h3ga3 296 LNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSAAGEDFD 336 (422)
T ss_dssp THHHHHHHHGGGGSSSGGGSEEESCCTTSCCHHHHTTSCHH
T ss_pred hHHHHHHHhhhcccccccceeeeecccccccccccccccHH
Confidence 11222221 2223333345699999999999886543
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-36 Score=346.20 Aligned_cols=273 Identities=21% Similarity=0.305 Sum_probs=179.3
Q ss_pred cceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeeccc
Q psy15051 31 TVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHE 110 (1065)
Q Consensus 31 ~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~ 110 (1065)
.|+|||||++|+|+++||+|||+||++|||||| +||||+ +|++ |++.+. .+|||
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~-~LGv~~---------------I~l~-Pi~~~~-~~~GY-------- 54 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLK-ELGIDF---------------VWLM-PVFSSI-SFHGY-------- 54 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHH-HTTCSE---------------EEEC-CCEECS-SSSCC--------
T ss_pred CEEEEEccccccCCCCCCccCHHHHHHhhHHHH-HcCCCE---------------EEEC-CCCCCC-CCCCC--------
Confidence 489999999999999999999999999999999 999994 4444 555443 57999
Q ss_pred ccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccc
Q psy15051 111 QISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLF 189 (1065)
Q Consensus 111 ~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f 189 (1065)
++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||++ ..|.||
T Consensus 55 ~~~d~-------~~vd~~~Gt~~d~~~lv~~~h~~gi~Vi--------lD~-------V~NH~~----------~~~~~~ 102 (391)
T d1lwha2 55 DVVDF-------YSFKAEYGSEREFKEMIEAFHDSGIKVV--------LDL-------PIHHTG----------FLHTWF 102 (391)
T ss_dssp SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEE-------CTTBCC----------TTSHHH
T ss_pred CccCC-------CCcCcccCCHHHHHHHHHHHHhcCCEEe--------ecc-------cccccc----------cccccc
Confidence 56665 667779999999999997 699999999 888 999976 677788
Q ss_pred cCCCcceecc---ccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCCC
Q psy15051 190 QGRPVNLMSY---VLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYPP 266 (1065)
Q Consensus 190 ~~~~~~~~~~---~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1065)
+........| ..+.. ......++ ... ....+|. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~-----~~~~~~~--------------------~ 139 (391)
T d1lwha2 103 QKALKGDPHYRDYYVWAN------KETDLDER------------REW-----DGEKIWH--------------------P 139 (391)
T ss_dssp HHHHTTCHHHHTTBCBCC------TTCCTTCB------------CSS-----SCCBCEE--------------------E
T ss_pred cccccCCccccccceecC------CccccCcc------------ccC-----CCCcccc--------------------c
Confidence 6643321111 11000 00000000 000 0000111 1
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHH
Q psy15051 267 PHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILE 346 (1065)
Q Consensus 267 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 346 (1065)
.....++.+.|. ..+||||+.||+|| ++|+++++
T Consensus 140 ~~~~~~~~~~~~-------------------~~~pdln~~n~~v~---------------------------~~i~~~~~ 173 (391)
T d1lwha2 140 LEDGRFYRGLFG-------------------PFSPDLNYDNPQVF---------------------------DEMKRLVL 173 (391)
T ss_dssp CTTSCEEECTTC-------------------TTSCBBCTTSHHHH---------------------------HHHHHHHH
T ss_pred cCCCcccccccC-------------------CcCCccccccchhh---------------------------HHHHHHHH
Confidence 112233477777 78999999999997 88999999
Q ss_pred HHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCccCCCCCCc
Q psy15051 347 FWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQSADRQPSC 426 (1065)
Q Consensus 347 ~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~ 426 (1065)
||++.||||||+|+|++|.+. ..+.++.|++++++.. ...++|...
T Consensus 174 ~w~e~gvDGfR~Daa~~~~~~---------------------------------~~~~~~~~~~~~~~~~-~~~~~e~~~ 219 (391)
T d1lwha2 174 HLLDMGVDGFRFDAAKHMRDT---------------------------------IEQNVRFWKYFLSDLK-GIFLAEIWA 219 (391)
T ss_dssp HHHHHTCCEEEETTGGGSSSS---------------------------------HHHHHHHHHHHHTTCC-SEEEECCCS
T ss_pred HHhhcCCCcceechHHHHHHh---------------------------------hhhhhHHHHHHHHHhh-hhhhhhhhc
Confidence 999999999999999999541 1244566777766652 334455421
Q ss_pred cccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH-----------HHHHHHhc-CcCCcccchhhcccCc
Q psy15051 427 ADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV-----------VSHFIYCG-IVDDTSALMVMNERRL 494 (1065)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~-----------~~~~Wq~~-m~~~~~~~~~~~nhd~ 494 (1065)
.. . .. ......+++.++|.+...+ .....+.. ...+..+..+..|||.
T Consensus 220 ~~-~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~ 279 (391)
T d1lwha2 220 EA-R------------------MV-DEHGRIFGYMLNFDTSHCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDM 279 (391)
T ss_dssp CS-S------------------SH-HHHHHHHEEEECHHHHHHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTS
T ss_pred cc-c------------------ee-eccccccCceecccHHHHHHHHHhhccHHHHHHHHHhhcccCCcccccccccccc
Confidence 10 0 00 0111344566777665443 22222222 2233455566799999
Q ss_pred cccchhhhhh
Q psy15051 495 STIASRTMAA 504 (1065)
Q Consensus 495 ~r~~sr~~~~ 504 (1065)
.|..++.+..
T Consensus 280 ~~~~~~~~~~ 289 (391)
T d1lwha2 280 SRLASFEGGF 289 (391)
T ss_dssp CCGGGGGGCC
T ss_pred cccccccccc
Confidence 9999988753
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.6e-35 Score=335.79 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=169.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCC----------CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNG----------DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~----------~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
||+++|||||+||||+||||||++++++ ||||++.||++|||+|||++|||+||++|
T Consensus 18 ~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~df~~LV~~a------------- 84 (344)
T d1ua7a2 18 TLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAA------------- 84 (344)
T ss_dssp HHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHH-------------
T ss_pred HHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHh-------------
Confidence 9999999999999999999999998643 59999999999999999999999999999
Q ss_pred cccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc
Q psy15051 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ 747 (1065)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~ 747 (1065)
|++||+||+|+|+||++.+++|+.+...
T Consensus 85 ----------------------------------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~ 112 (344)
T d1ua7a2 85 ----------------------------------------------------EEYGIKVIVDAVINHTTFDYAAISNEVK 112 (344)
T ss_dssp ----------------------------------------------------HTTTCEEEEEECCSBCCSCTTTSCHHHH
T ss_pred ----------------------------------------------------cccceeEeeccceeeecCCCchhhcccc
Confidence 9999999999999999999999988654
Q ss_pred cCCCCCcceeecCCCCCCCCCC----CCCCc---cccCCCHHHHHHHHHHHHh----------------c----------
Q psy15051 748 KIDPYTNYYVWKDGLNGKPGTP----PNNWK---HINITSREVMRSQKDVVQS----------------F---------- 794 (1065)
Q Consensus 748 ~~~~~~d~y~~~~~~dG~p~~~----~~~W~---~ln~~n~~v~~~l~~~lk~----------------~---------- 794 (1065)
. +++||......... ... ...|. .||+.||+||++|+++++. +
T Consensus 113 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dln~~np~Vr~~l~~~~~~w~~~giDGfR~Daakhv~~~~~~~~~~ 188 (344)
T d1ua7a2 113 S---IPNWTHGNTQIKNW-SDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHIELPDDGSYGS 188 (344)
T ss_dssp T---STTCEEECCBCCCT-TCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCTTSGGGCC
T ss_pred C---CcccccCCCCCCCC-CCCcCcccCccccCCccccCChHHHHHHHHHHHHHHhcCCCeEEEeeeeccCchhhHHHHH
Confidence 3 34555432211000 000 00011 1899999999999998442 0
Q ss_pred --------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhc-CCChHHHHHHHHHHhhcCCCCCccccc
Q psy15051 795 --------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGA-TSNAKDLENVVNAYLKSLPSGKWSSWM 865 (1065)
Q Consensus 795 --------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~f 865 (1065)
.+..+++||.|..++.....|.+.. ...++.|...+.+++.. ......+ .......+. ...+.|
T Consensus 189 ~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~--~~~~~~f~~~l~~~~~~~~~~~~~~----~~~~~~~~~-~~~v~f 261 (344)
T d1ua7a2 189 QFWPNITNTSAEFQYGEILQDSASRDAAYANYM--DVTASNYGHSIRSALKNRNLGVSNI----SHYASDVSA-DKLVTW 261 (344)
T ss_dssp SHHHHHTCSSCSEEEECCCCSTTCCHHHHHTTS--EEECHHHHHHHHHHHHHTCCCHHHH----SSCSSSSCG-GGEEEC
T ss_pred HHHHHHHhcCCceEEEEEeeccchhhhhhccCC--ccccccccchHHHHHhcCCcchhhH----HHHHhcCCH-hhhchH
Confidence 1156899999987665555554432 22334455556666543 2232222 222221221 233459
Q ss_pred ccCCChhhHhhhc----CHHHHHHHHHHHHhCC-CeEEEEcccccCccCC
Q psy15051 866 VGGHSITRIATRY----SPDLVDAMNMLTLLLP-GTAVTFAGDELGMESP 910 (1065)
Q Consensus 866 lenHD~~Rl~s~~----~~~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~ 910 (1065)
++|||+.|..... +....++++++++++| |+||||||||+|+.+.
T Consensus 262 ~~NHD~~r~~~~~~~~~~~~~~~la~a~ll~~~~G~P~iY~G~E~G~~~~ 311 (344)
T d1ua7a2 262 VESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEGGGNGV 311 (344)
T ss_dssp SSCHHHHHSTTCSSTTCCHHHHHHHHHHHHTSSSSEEEEECCCTTCBTTB
T ss_pred hhcCCCCCCcccccccCCHHHHHHHHHHHHHhCCCeEEEEechhccCCCC
Confidence 9999999876553 4567788888888887 9999999999999875
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=100.00 E-value=4.2e-36 Score=337.27 Aligned_cols=261 Identities=15% Similarity=0.184 Sum_probs=165.6
Q ss_pred EEEeccccc-CcCCCCCCCCCCcccchhhhcccccccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-C
Q psy15051 563 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-D 640 (1065)
Q Consensus 563 Yei~v~~F~-d~~~d~~Gdl~g~~~~~~~~~~t~~~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-~ 640 (1065)
|||++..|. +++.+++|+++ ||++||||||+||||+||||||++++++ |||++.||++||| +
T Consensus 1 ~~~~~~~f~~~~~~~~~g~~~---------------~i~~kLdyl~~lGv~~i~L~Pi~~~~~~-~gY~~~d~~~id~~~ 64 (347)
T d1ht6a2 1 HQVLFQGFNWESWKQSGGWYN---------------MMMGKVDDIAAAGVTHVWLPPPSHSVSN-EGYMPGRLYDIDASK 64 (347)
T ss_dssp CCCEEECCCTTGGGCTTCHHH---------------HHHTTHHHHHHTTCCEEEECCCSCBSST-TSSSBCCTTCGGGCT
T ss_pred CeeEEeccccCcCCCCCCCHH---------------HHHHhHHHHHHcCCCEEEECCCCcCCCC-CCCCccCcCcCCccc
Confidence 789999999 88889999999 9999999999999999999999999875 9999999999998 6
Q ss_pred CCCHHHHHHHHHHHHhcCCceeecccccccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhh
Q psy15051 641 FGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEH 720 (1065)
Q Consensus 641 ~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 720 (1065)
|||++||++||++| |
T Consensus 65 ~G~~~~f~~lv~~~-----------------------------------------------------------------H 79 (347)
T d1ht6a2 65 YGNAAELKSLIGAL-----------------------------------------------------------------H 79 (347)
T ss_dssp TCCHHHHHHHHHHH-----------------------------------------------------------------H
T ss_pred CCCHHHHHHHHHHH-----------------------------------------------------------------h
Confidence 99999999999999 8
Q ss_pred hcCcEEEEEeccCCCCCCchhhHhhhcc-----CCCCCcceeecCCCCCCCCC----C-CCC--Cc---cccCCCHHHHH
Q psy15051 721 RAGMKILVEFVPNHSSNKHDWFIKSAQK-----IDPYTNYYVWKDGLNGKPGT----P-PNN--WK---HINITSREVMR 785 (1065)
Q Consensus 721 ~~Gi~vIlDvV~NHts~~~~wf~~~~~~-----~~~~~d~y~~~~~~dG~p~~----~-~~~--W~---~ln~~n~~v~~ 785 (1065)
++||+||+|+|+||++..|+|+...... ...+.++............. . ... +. .||+.|++|++
T Consensus 80 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~n~~v~~ 159 (347)
T d1ht6a2 80 GKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQR 159 (347)
T ss_dssp HTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTTSCBBCTTCHHHHH
T ss_pred hcceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCCCCcccccchhhhh
Confidence 8888888888899999988887654311 11122221111100000000 0 000 11 19999999999
Q ss_pred HHHHHHHhc----C------------------------CceEEEeecCCCChHH---------------HhhhccC-CCC
Q psy15051 786 SQKDVVQSF----P------------------------LILMIITEAYSPSLEK---------------VAKYYGT-GDT 821 (1065)
Q Consensus 786 ~l~~~lk~~----~------------------------~~~~ligE~~~~~~~~---------------~~~y~~~-~~~ 821 (1065)
++.++++.+ . ++.+..+|........ ...+... ...
T Consensus 160 ~l~~~~~~wi~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (347)
T d1ht6a2 160 ELKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGA 239 (347)
T ss_dssp HHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHCCSCEEECCCCCCCBCTTSSBCSCCHHHHHHHHHHHHHHTGG
T ss_pred hhhhhhhhhcccCCcceEEEechhhcChHHHHHHHHhcccccchhhhcchhhccccccchhhhhcchhhhhhhhhhhCCc
Confidence 999984321 0 1344555554331100 0000000 000
Q ss_pred ccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCC-----CCCcccccccCCChhhHhhhcC--HHHHHHHHHHHHhCC
Q psy15051 822 QGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP-----SGKWSSWMVGGHSITRIATRYS--PDLVDAMNMLTLLLP 894 (1065)
Q Consensus 822 ~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~flenHD~~Rl~s~~~--~~~~kla~~ll~tlp 894 (1065)
......+++.....+........ ...+. ...... .....++|++|||+.|+++.++ .++.+++++++||+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~v~fl~nHD~~R~~s~~~~~~~~~~~a~a~llt~p 317 (347)
T d1ht6a2 240 ASAGMVFDFTTKGILNAAVEGEL-WRLID-PQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHP 317 (347)
T ss_dssp GSSEEEECHHHHHHHHHHTTTCG-GGGSC-TTSSCSSHHHHCGGGEEEESCCTTTSTTTCSSCCCGGGHHHHHHHHHHSS
T ss_pred cccchhhhcchhhHHHHhhccch-HHHHH-HhhhccccccCChhHeEEecCCCCccCcccccCCCHHHHHHHHHHHHHcC
Confidence 11122233333222211100000 00000 000000 0112335999999999999987 457889999999999
Q ss_pred CeEEEEcccccC
Q psy15051 895 GTAVTFAGDELG 906 (1065)
Q Consensus 895 GiP~IyyGdE~G 906 (1065)
||||||||||++
T Consensus 318 GiP~IyyGD~~~ 329 (347)
T d1ht6a2 318 GIPCIFYDHFFN 329 (347)
T ss_dssp SEEEEEHHHHHT
T ss_pred CceEEEeCCCcC
Confidence 999999999974
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=6.6e-36 Score=342.01 Aligned_cols=213 Identities=22% Similarity=0.337 Sum_probs=154.5
Q ss_pred chhhhcccceEEEecccccCcCCCCc--------------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcce
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGI--------------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIY 83 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~--------------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~ 83 (1065)
.|+||+++|||||+||||+|+++++. |||+||++|||||| +||||+||++
T Consensus 4 ~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~-~lGi~~I~l~--------- 73 (382)
T d1wzla3 4 TPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE-ELGVTALYFT--------- 73 (382)
T ss_dssp CCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHH-HHTCCEEEEC---------
T ss_pred CCccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHH-HCCCCEEEEC---------
Confidence 47999999999999999998876532 99999999999999 9999944444
Q ss_pred eeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccc
Q psy15051 84 ISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIES 162 (1065)
Q Consensus 84 ~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~ 162 (1065)
|++.++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 74 -------Pv~~~~-~~~gY--------~~~~~-------~~vd~~~Gt~~d~~~lv~~~H~~Gi~vi--------lD~-- 120 (382)
T d1wzla3 74 -------PIFASP-SHHKY--------DTADY-------LAIDPQFGDLPTFRRLVDEAHRRGIKII--------LDA-- 120 (382)
T ss_dssp -------CCEECS-SSSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHTTTCEEE--------EEE--
T ss_pred -------CcCCCC-cccCC--------ccccc-------cccccCCCCHHHHHHHHHHHHhcccceE--------eee--
Confidence 555443 47899 55555 666679999999999997 799999999 887
Q ss_pred ccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcc
Q psy15051 163 LFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEK 242 (1065)
Q Consensus 163 ~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1065)
|+||++ .+|+||++....... .++.++
T Consensus 121 -----V~NH~s----------~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 147 (382)
T d1wzla3 121 -----VFNHAG----------DQFFAFRDVLQKGEQ--------------------------------------SRYKDW 147 (382)
T ss_dssp -----CCSBCC----------TTSHHHHHHHHHGGG--------------------------------------CTTGGG
T ss_pred -----eecccc----------cccccccchhhcCcc--------------------------------------cccccc
Confidence 888865 677777653211000 000111
Q ss_pred c-ccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCC
Q psy15051 243 Y-WGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWN 321 (1065)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~ 321 (1065)
| |.+..... .+.....+++.+. ..+||||+.||+|+
T Consensus 148 ~~~~~~~~~~--------------~~~~~~~~~~~~~-------------------~~~~dLn~~n~~v~---------- 184 (382)
T d1wzla3 148 FFIEDFPVSK--------------TSRTNYETFAVQV-------------------PAMPKLRTENPEVK---------- 184 (382)
T ss_dssp BCBSSSSCCC--------------SSCCSBCBSSSSC-------------------TTCBBBCTTSHHHH----------
T ss_pred cccccccccc--------------CCCCccccccccc-------------------ccCCccCCCCHHHH----------
Confidence 1 11100000 0000011134444 68999999999997
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhH
Q psy15051 322 PSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPET 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~ 401 (1065)
++|+++++||+++||||||+|+|+++.+
T Consensus 185 -----------------~~~~~~~~~w~~~gvDGfR~D~~~~~~~----------------------------------- 212 (382)
T d1wzla3 185 -----------------EYLFDVARFWMEQGIDGWRLDVANEVDH----------------------------------- 212 (382)
T ss_dssp -----------------HHHHHHHHHHHHTTCCEEEETTGGGSCH-----------------------------------
T ss_pred -----------------HHHHHHHHHHHHcCCCceeecchhhcch-----------------------------------
Confidence 8899999999999999999999999965
Q ss_pred HHHHHHHHHHHHhh-CCccCCCCCCccc
Q psy15051 402 YEMLYKWRTLVEKF-GNQSADRQPSCAD 428 (1065)
Q Consensus 402 ~~~~~~~r~~~d~~-~~~~~~~~~~~~~ 428 (1065)
+++++++..+.+. |+..+++|.....
T Consensus 213 -~~~~~~~~~~~~~~p~~~~i~e~~~~~ 239 (382)
T d1wzla3 213 -AFWREFRRLVKSLNPDALIVGEIWHDA 239 (382)
T ss_dssp -HHHHHHHHHHHHHCTTCEEEECCSSCC
T ss_pred -hhhhHHHHHHHhhCCceEEeeeccccc
Confidence 6677777766665 8888889875443
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=5e-36 Score=344.33 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=180.6
Q ss_pred hhhhcccceEEEecccccCcCCCCc------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcc
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDGI------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPI 92 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g~------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~ 92 (1065)
|..|++.|||||+||||++++++++ |||+||++|||||| +||||.||++|..++... .
T Consensus 3 p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~-~LGv~~I~L~Pi~~~~~~---------~ 72 (381)
T d2guya2 3 PADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQ-GMGFTAIWITPVTAQLPQ---------T 72 (381)
T ss_dssp HHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHH-TTTCCEEEECCCEEECCC---------C
T ss_pred CccccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhHHHHH-HCCCCEEEeCCCCCCCcc---------c
Confidence 5567889999999999999999887 99999999999999 999996666665542210 0
Q ss_pred ccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCC
Q psy15051 93 LTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSH 171 (1065)
Q Consensus 93 ~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH 171 (1065)
......+|||. +.|| ++|||+|||++|||+||+ ||++||+|| +|+ |+||
T Consensus 73 ~~~~~~~~gY~--~~d~-------------~~vd~~~Gt~~dfk~lv~~~H~~Gi~Vi--------lD~-------V~NH 122 (381)
T d2guya2 73 TAYGDAYHGYW--QQDI-------------YSLNENYGTADDLKALSSALHERGMYLM--------VDV-------VANH 122 (381)
T ss_dssp BTTBCCTTSCS--EEEE-------------EEECTTSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSB
T ss_pred CCCCCCCCCcc--cccc-------------cccccCCCCHHHHHHHHHHHHhhcccee--------eec-------cccc
Confidence 11123467883 5554 455558999999999998 699999999 887 8888
Q ss_pred ccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccccccccccc
Q psy15051 172 SMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERT 251 (1065)
Q Consensus 172 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1065)
++ .+|.|++.....+..+.. .++ .+++. +...
T Consensus 123 ~s----------~~~~~~~~~~~~~~~~~~---~~~-------~~~~~------------------------~~~~---- 154 (381)
T d2guya2 123 MG----------YDGAGSSVDYSVFKPFSS---QDY-------FHPFC------------------------FIQN---- 154 (381)
T ss_dssp CC----------EEBCGGGCCGGGSBSCCS---GGG-------BCCSC------------------------BCCC----
T ss_pred cc----------cccCcccccccccCCCCc---ccc-------eeccc------------------------cccc----
Confidence 76 445555443222111100 000 00000 0000
Q ss_pred CCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccc
Q psy15051 252 VSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDC 331 (1065)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~ 331 (1065)
..+ .....+++ ++.+. ..+||||+.||+||
T Consensus 155 -~~~-~~~~~~~~---------~~~~~-------------------~~~~dln~~n~~v~-------------------- 184 (381)
T d2guya2 155 -YED-QTQVEDCW---------LGDNT-------------------VSLPDLDTTKDVVK-------------------- 184 (381)
T ss_dssp -TTC-HHHHHHSB---------EECSS-------------------EEECBBCTTSHHHH--------------------
T ss_pred -ccc-ccccceee---------ccCCc-------------------cccchhccccHHHH--------------------
Confidence 000 01112333 66666 68999999999997
Q ss_pred hhhhHHHHHHHHHHHHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHH
Q psy15051 332 QMFCYEITLLLCILEFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRT 410 (1065)
Q Consensus 332 ~~~~~~~~~~~~~l~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~ 410 (1065)
+++++++++|+. .||||||+|+++++.+ ++++++++
T Consensus 185 -------~~~~~~~~~w~~~~giDGfR~D~~~~~~~------------------------------------~f~~~~~~ 221 (381)
T d2guya2 185 -------NEWYDWVGSLVSNYSIDGLRIDTVKHVQK------------------------------------DFWPGYNK 221 (381)
T ss_dssp -------HHHHHHHHHHHHHHTCCEEEETTGGGSCG------------------------------------GGHHHHHH
T ss_pred -------HHHHHHhhhccccccccceeeehHhhcCH------------------------------------HHHHhhhh
Confidence 789999999975 6999999999999865 45666665
Q ss_pred HHHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccch----hhhHH------------HHHH
Q psy15051 411 LVEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAD----LLHQV------------VSHF 474 (1065)
Q Consensus 411 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~----l~~~~------------~~~~ 474 (1065)
. ++..++||..-......... + ..++++++|. +.... .+..
T Consensus 222 ~----~~~~~igE~~~~~~~~~~~~-------~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (381)
T d2guya2 222 A----AGVYCIGEVLDGDPAYTCPY-------Q------------NVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINT 278 (381)
T ss_dssp H----HTSEEEECCCCSCHHHHGGG-------G------------GTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHH
T ss_pred c----ceeeeeeecccccHhhhccc-------c------------ccccceecchhHHHHHHHHhccCCchHHHHHHHHH
Confidence 3 45667888753333221111 0 1112333333 22211 4566
Q ss_pred HHhcCcCCcccchhhcccCccccchhhhh
Q psy15051 475 IYCGIVDDTSALMVMNERRLSTIASRTMA 503 (1065)
Q Consensus 475 Wq~~m~~~~~~~~~~~nhd~~r~~sr~~~ 503 (1065)
|....+.......+.+|||++|.+++.+.
T Consensus 279 ~~~~~~~~~~~~~f~enHD~~R~~s~~~~ 307 (381)
T d2guya2 279 VKSDCPDSTLLGTFVENHDNPRFASYTND 307 (381)
T ss_dssp HHHHSSCGGGSEECSCCTTSCCGGGTCCC
T ss_pred HHhhcCccccceeeccCcCccccccccCC
Confidence 77777776666667799999999998874
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=1.2e-35 Score=341.56 Aligned_cols=285 Identities=19% Similarity=0.275 Sum_probs=189.7
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhh--------HhhhCCCCcCCCCCCCCCcceeeecccCcccccccccc
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYL--------ELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTW 100 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl--------~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (1065)
+++|||||+|++|+|+++++.|||+||++||||| | +||||+||++ |++.++ .+|
T Consensus 3 k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~-~LGv~~i~l~----------------Pi~~~~-~~~ 64 (409)
T d1wzaa2 3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIA-DLGVNGIWLM----------------PIFKSP-SYH 64 (409)
T ss_dssp CCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCS-SCCCSEEEEC----------------CCEECS-SSS
T ss_pred CccEEEEEecchhcCCCCCCCcCHHHHHHhccccccccccHHh-hcCccEEEEC----------------CCCCCC-CCC
Confidence 6899999999999999999999999999999998 7 9999944444 555443 468
Q ss_pred CccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCc
Q psy15051 101 SRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSK 179 (1065)
Q Consensus 101 gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~ 179 (1065)
|| ++.+| ++|||+|||++|||+||+ ||++||+|| +|| |+||++
T Consensus 65 GY--------~~~d~-------~~vd~~~G~~~dlk~lv~~~H~~Gi~Vi--------lD~-------V~NH~~------ 108 (409)
T d1wzaa2 65 GY--------DVTDY-------YKINPDYGTLEDFHKLVEAAHQRGIKVI--------IDL-------PINHTS------ 108 (409)
T ss_dssp CC--------SCSEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE--------EEC-------CCSBCC------
T ss_pred Cc--------CcccC-------CCcCcccCCHHHHHHHHHHHHhcCCEEE--------Eec-------cccccc------
Confidence 99 55555 667779999999999997 799999999 888 999965
Q ss_pred ccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhh
Q psy15051 180 HQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQA 259 (1065)
Q Consensus 180 ~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1065)
..|+||+..+..... ....|+.-....+........+ ...| ...
T Consensus 109 ----~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------~~~ 152 (409)
T d1wzaa2 109 ----ERHPWFLKASRDKNS---------------EYRDYYVWAGPDTDTKETKLDG-----GRVW------------HYS 152 (409)
T ss_dssp ----TTSHHHHHHHTCTTC---------------TTGGGBCBCCSCCCCCBCSSSC-----BCSE------------EEE
T ss_pred ----ccCcchhhhhccccc---------------cccccccccccccccCccccCC-----Cccc------------ccc
Confidence 667777664332110 0001110000000000000000 0000 000
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHH
Q psy15051 260 LQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEIT 339 (1065)
Q Consensus 260 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1065)
.... +.+.+. ..+||||+.||+|| +
T Consensus 153 ~~~~---------~~~~~~-------------------~~~~dln~~n~~vr---------------------------~ 177 (409)
T d1wzaa2 153 PTGM---------YYGYFW-------------------SGMPDLNYNNPEVQ---------------------------E 177 (409)
T ss_dssp TTEE---------EECSSC-------------------TTSCBBCTTSHHHH---------------------------H
T ss_pred cccc---------ccccCC-------------------CCCcccccccHHHH---------------------------H
Confidence 0111 134444 68999999999997 8
Q ss_pred HHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhhCCcc
Q psy15051 340 LLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKFGNQS 419 (1065)
Q Consensus 340 ~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~~~~~ 419 (1065)
+|++++++|+++||||||+|+|+++.+.. ..+..+++++++|+.+.+.+...
T Consensus 178 ~~~~~~~~wi~~gVDGfR~D~~~~i~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 229 (409)
T d1wzaa2 178 KVIGIAKYWLKQGVDGFRLDGAMHIFPPA----------------------------QYDKNFTWWEKFRQEIEEVKPVY 229 (409)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSCGG----------------------------GTTHHHHHHHHHHHHHTTTSCCE
T ss_pred HHHHHHHHHHHcCCCeecccchhhcccch----------------------------hccchhHHHHHHHHhhccCCCcE
Confidence 89999999999999999999999997632 22456799999999998886677
Q ss_pred CCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH------------------HHHHHHhcCcC
Q psy15051 420 ADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV------------------VSHFIYCGIVD 481 (1065)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~------------------~~~~Wq~~m~~ 481 (1065)
+++|..........+. + ..++.+|+|.+.... ....++.....
T Consensus 230 ~~~E~~~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (409)
T d1wzaa2 230 LVGEVWDISETVAPYF-------K------------YGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGF 290 (409)
T ss_dssp EEEECCSCHHHHGGGG-------T------------TTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEeecCccchhhhh-------h------------cccccchhhhHHHHHHHHHhccCccchHHHHHHHHHhhhhhhcc
Confidence 8888754333221111 1 123566666655333 22333344443
Q ss_pred Cc-ccchhhcccCccccchhhhhhh
Q psy15051 482 DT-SALMVMNERRLSTIASRTMAAM 505 (1065)
Q Consensus 482 ~~-~~~~~~~nhd~~r~~sr~~~~~ 505 (1065)
.. ....++.|||.+|..+|+++..
T Consensus 291 ~~~~~~~f~~nhD~~r~~~~~~~~~ 315 (409)
T d1wzaa2 291 GNYIDAPFLTNHDQNRILDQLGQDR 315 (409)
T ss_dssp TSCCCBCBSCCTTSCCHHHHTTTCH
T ss_pred ccccccccccccccCccccccCCch
Confidence 33 3345669999999999998764
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=3.9e-35 Score=332.17 Aligned_cols=235 Identities=13% Similarity=0.159 Sum_probs=150.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCC---------CCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPN---------GDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTK 668 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~---------~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~ 668 (1065)
||++||||||+||||+|||||+++++. .+|||++.|| .|||+|||++|||+||++|
T Consensus 38 ~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd~~~Gt~~df~~LV~~a-------------- 102 (357)
T d1gcya2 38 ILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKNGRYGSDAQLRQAASAL-------------- 102 (357)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSCSSSCCHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccCccCCCHHHHHHHHHHH--------------
Confidence 999999999999999999999999853 3699999998 6999999999999999999
Q ss_pred ccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc
Q psy15051 669 NRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK 748 (1065)
Q Consensus 669 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~ 748 (1065)
|++||+||+|+|+||++..++|+......
T Consensus 103 ---------------------------------------------------H~~GI~VIlD~V~NH~~~~~~~~~~~~~~ 131 (357)
T d1gcya2 103 ---------------------------------------------------GGAGVKVLYDVVPNHMNRGYPDKEINLPA 131 (357)
T ss_dssp ---------------------------------------------------HHTTCEEEEEECCSBCCTTCSSCSCCCCS
T ss_pred ---------------------------------------------------HhcCCeEEEEEeccccCCCCCcccccccc
Confidence 88888999999999999999998764422
Q ss_pred CC-CCCcceeecCCCCCCCCCCCCCC----ccccCCCHHHHHHHHHHHHh-----------------------------c
Q psy15051 749 ID-PYTNYYVWKDGLNGKPGTPPNNW----KHINITSREVMRSQKDVVQS-----------------------------F 794 (1065)
Q Consensus 749 ~~-~~~d~y~~~~~~dG~p~~~~~~W----~~ln~~n~~v~~~l~~~lk~-----------------------------~ 794 (1065)
.. .+...+......... ......| ..||+.||+|++++.++++. .
T Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~ 210 (357)
T d1gcya2 132 GQGFWRNDCADPGNYPND-CDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDS 210 (357)
T ss_dssp SSSCBGGGSCCCSSSCBT-TBSSCCSTTSTTBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred CCCccccccCCCCCCCCC-CCccccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhcCCHHHHHHHHhhc
Confidence 11 111111000000000 0001111 11999999999999987221 2
Q ss_pred CCceEEEeecCCCChHHHhhhccCCCC-----------ccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCC---CC
Q psy15051 795 PLILMIITEAYSPSLEKVAKYYGTGDT-----------QGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPS---GK 860 (1065)
Q Consensus 795 ~~~~~ligE~~~~~~~~~~~y~~~~~~-----------~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~ 860 (1065)
.++++++||.|..... ...+...... ......+++.+...+... ....+...+ ..... ..
T Consensus 211 ~~~~~~~gE~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~ 284 (357)
T d1gcya2 211 ADNSFCVGELWKGPSE-YPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNG-SIADWKHGL----NGNPDPRWRE 284 (357)
T ss_dssp CTTSEEEECCCCCGGG-SCTTSGGGGSCHHHHHHHHHHHHTSCEECHHHHHHHHHS-CGGGGGGSG----GGCSSHHHHT
T ss_pred CCCceeeeeeccCccc-hhhhhhhccchhhhhhHhHhhhccccccchhhhhhhhhh-hHHHHHHHH----hhCccccccc
Confidence 4588999999976221 1111110000 001111222222222110 111111111 11111 11
Q ss_pred cccccccCCChhhHhhhcC--------HHHHHHHHHHHHhCCCeEEEEccccc
Q psy15051 861 WSSWMVGGHSITRIATRYS--------PDLVDAMNMLTLLLPGTAVTFAGDEL 905 (1065)
Q Consensus 861 ~~~~flenHD~~Rl~s~~~--------~~~~kla~~ll~tlpGiP~IyyGdE~ 905 (1065)
..++|++|||+.|+.+..+ .+++++|++++||+||+||||||||+
T Consensus 285 ~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~alllt~pGiP~IyyGde~ 337 (357)
T d1gcya2 285 VAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMY 337 (357)
T ss_dssp TEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred eeEEeecCCCcccccccCCccccccCHHHHHHHHHHHHHhCCCccEEEcCCcc
Confidence 2345999999999887653 34788999999999999999999997
|
| >d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=100.00 E-value=4.8e-35 Score=340.33 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=153.3
Q ss_pred CchhhhcccceEEEecccccCcCCCC------------------------------------cccccchhhhhhhhHhh-
Q psy15051 23 NQKEWWKNTVIYQILVPSFKDSNNDG------------------------------------IGDLRGKNVRKRYLELT- 65 (1065)
Q Consensus 23 ~~~~w~~~~viYqi~~~~F~d~~~~g------------------------------------~Gdl~gi~~kL~yl~~~- 65 (1065)
..|+||+++|||||+||||+|+|+++ .|||+||++|||||+ +
T Consensus 3 ~~p~W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLdYl~-~~ 81 (432)
T d1ji1a3 3 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIK-KT 81 (432)
T ss_dssp CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHH-TT
T ss_pred CCCccccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHHhhHHH-hh
Confidence 35899999999999999999886543 299999999999998 6
Q ss_pred hCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhC
Q psy15051 66 LGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKND 144 (1065)
Q Consensus 66 LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~ 144 (1065)
|||| ++|++ |+++++ .+||| ++.+| ++|||+|||++||++||+ ||++
T Consensus 82 LGv~---------------~I~L~-Pi~~~~-~~~GY--------~~~d~-------~~id~~~Gt~~d~~~lv~~~H~~ 129 (432)
T d1ji1a3 82 LGAN---------------ILYLN-PIFKAP-TNHKY--------DTQDY-------MAVDPAFGDNSTLQTLINDIHST 129 (432)
T ss_dssp TCCC---------------EEEES-CCEECS-SSSCC--------SCSEE-------EEECTTTCCHHHHHHHHHHHHCS
T ss_pred cCCC---------------EEEeC-CCCcCC-CCCCc--------ccccc-------cccCcccCCHHHHHHHHHHHHHh
Confidence 9999 44555 666554 57999 56665 666679999999999997 6998
Q ss_pred C----CEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCcc
Q psy15051 145 S----LHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVC 220 (1065)
Q Consensus 145 g----i~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~ 220 (1065)
| |+|| +|+ |+||++ ..|+||+..+.....+ ...+...+|+
T Consensus 130 g~~~~I~Vi--------lD~-------V~NH~s----------~~~~~~~~~~~~~~~~----------~~~~~~~~~~- 173 (432)
T d1ji1a3 130 ANGPKGYLI--------LDG-------VFNHTG----------DSHPWFDKYNNFSSQG----------AYESQSSPWY- 173 (432)
T ss_dssp SSSSCCEEE--------EEE-------CCSBCC----------TTSTTTCTTCCSSSCC----------TTTCTTCTTG-
T ss_pred hhhcceeEe--------ccc-------cccccC----------CCchhHhhccCccccc----------cccccccccc-
Confidence 7 7899 776 777754 4555555422110000 0000001111
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCC
Q psy15051 221 CPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQ 300 (1065)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q 300 (1065)
..+ . ++ ...+.+..+.+. ..+
T Consensus 174 --------------------~~~--~----------------~~--~~~~~~~~~~~~-------------------~~~ 194 (432)
T d1ji1a3 174 --------------------NYY--T----------------FY--TWPDSYASFLGF-------------------NSL 194 (432)
T ss_dssp --------------------GGB--C----------------EE--ETTTEECEETTE-------------------EEE
T ss_pred --------------------ccc--c----------------cc--cccccccccccc-------------------Ccc
Confidence 000 0 00 000111123333 578
Q ss_pred CCCCCCCCc--ccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHH--cCCCeeeecCccccccCCCCCCCCCC
Q psy15051 301 PHCAVPNPK--VLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLK--RGVDGFGMDSVLKLYEHESFANEPRL 376 (1065)
Q Consensus 301 ~dln~~np~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~--~GvDGfRlDav~~l~~~~~~~d~p~~ 376 (1065)
|+||+.|+. |+ +++ ++++.+++++|+. .||||||+|+|+++.++..
T Consensus 195 ~~ln~~n~~~~v~--------------------~~~---~~~~~~~~~~wl~~~~gvDGfR~D~~~~i~~~~~------- 244 (432)
T d1ji1a3 195 PKLNYGNSGSAVR--------------------GVI---YNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGN------- 244 (432)
T ss_dssp EBBBCCSTTCHHH--------------------HHH---TTSTTSHHHHHHSTTTCCCEEEETTGGGCBSTTC-------
T ss_pred CccccCCCcHHHH--------------------HHH---HHHHHHHHHHhhhhhcCccceeeeceeeeccCCC-------
Confidence 999999965 43 111 1346678999985 5999999999999966321
Q ss_pred CcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCCCCcc
Q psy15051 377 PEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQPSCA 427 (1065)
Q Consensus 377 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~~~~~ 427 (1065)
....+..+++++++++.+... |+..++||....
T Consensus 245 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~igE~~~~ 278 (432)
T d1ji1a3 245 ------------------NGSDVTNHQIWSEFRNAVKGVNSNAAIIGEYWGN 278 (432)
T ss_dssp ------------------CCSSHHHHHHHHHHHHHHHHHCTTCEEEECCSSC
T ss_pred ------------------CcccccchhHHHHHHHHHHhhCCCeEEEeeeccC
Confidence 224467789999998877765 899999997543
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=4.7e-35 Score=336.23 Aligned_cols=274 Identities=15% Similarity=0.123 Sum_probs=176.1
Q ss_pred hhhcccceEEEecccccCcCCCCc------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccc
Q psy15051 26 EWWKNTVIYQILVPSFKDSNNDGI------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPIL 93 (1065)
Q Consensus 26 ~w~~~~viYqi~~~~F~d~~~~g~------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~ 93 (1065)
..|++.|||||+|+||.++++++. |||+||++|||||| +||||+||++|+.++... ..
T Consensus 4 ~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~-~LGv~~I~L~Pi~~~~~~---------~~ 73 (381)
T d2aaaa2 4 ASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIE-GMGFTAIWISPITEQLPQ---------DT 73 (381)
T ss_dssp HHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHH-TTTCCEEEECCCEEECCC---------CB
T ss_pred hhhCCCcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHHHHHH-HcCCCEEEeCCCccCCcc---------CC
Confidence 456999999999999999987765 99999999999999 999997777776553221 11
Q ss_pred cccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCc
Q psy15051 94 TTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHS 172 (1065)
Q Consensus 94 ~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~ 172 (1065)
.....+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||+
T Consensus 74 ~~~~~~~gY--------~~~d~-------~~id~~~Gt~~~~k~lv~~aH~~Gi~Vi--------lD~-------V~NH~ 123 (381)
T d2aaaa2 74 ADGEAYHGY--------WQQKI-------YDVNSNFGTADNLKSLSDALHARGMYLM--------VDV-------VPDHM 123 (381)
T ss_dssp TTBCSTTSC--------SEEEE-------EEECTTTCCHHHHHHHHHHHHTTTCEEE--------EEE-------CCSBC
T ss_pred CCCCCCccc--------ccccc-------cccccccCCHHHHHHHHHHHhhhhhccc--------ccc-------ccccc
Confidence 122345787 44444 556668999999999997 799999999 887 88887
Q ss_pred cccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccC
Q psy15051 173 MCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTV 252 (1065)
Q Consensus 173 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1065)
+ .++.|.......+..+ + ..+..+|++ ....
T Consensus 124 ~----------~~~~~~~~~~~~~~~~------~----~~~~~~~~~-----------------------------~~~~ 154 (381)
T d2aaaa2 124 G----------YAGNGNDVDYSVFDPF------D----SSSYFHPYC-----------------------------LITD 154 (381)
T ss_dssp C----------BSSCGGGCCGGGSBSC------C----SGGGBCCCC-----------------------------BCCC
T ss_pred c----------cccCCccccccccCCc------c----cccccCCCc-----------------------------cccc
Confidence 5 2223322211110000 0 000001111 0000
Q ss_pred CcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccch
Q psy15051 253 SSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQ 332 (1065)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~ 332 (1065)
..+ ......++ ++.+. ..+||||+.||+|+
T Consensus 155 ~~~-~~~~~~~~---------~~~~~-------------------~~~pdln~~np~v~--------------------- 184 (381)
T d2aaaa2 155 WDN-LTMVEDCW---------EGDTI-------------------VSLPDLDTTETAVR--------------------- 184 (381)
T ss_dssp TTC-HHHHHHSB---------EECSS-------------------SEECBBCTTSHHHH---------------------
T ss_pred ccc-ccccCCCc---------cCCcc-------------------ccCccccccchhhh---------------------
Confidence 000 01112222 44555 68999999999997
Q ss_pred hhhHHHHHHHHHHHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHH
Q psy15051 333 MFCYEITLLLCILEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTL 411 (1065)
Q Consensus 333 ~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~ 411 (1065)
++|++++++|++. ||||||+|+++++.. ++++++++.
T Consensus 185 ------~~~~~~~~~~~~~~giDGfR~D~~~~~~~------------------------------------~f~~~~~~~ 222 (381)
T d2aaaa2 185 ------TIWYDWVADLVSNYSVDGLRIDSVLEVQP------------------------------------DFFPGYNKA 222 (381)
T ss_dssp ------HHHHHHHHHHHHHHTCCEEEESCSTTSCG------------------------------------GGHHHHHHH
T ss_pred ------hHHhhhhhhcccceeeeeeeecccccccH------------------------------------HHHHHHHhc
Confidence 7899999999964 999999999998853 456666553
Q ss_pred HHhhCCccCCCCCCccccceeeecccCccccCCCCcccccCCCcccccccccchhhhHH----------------HHHHH
Q psy15051 412 VEKFGNQSADRQPSCADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRADLLHQV----------------VSHFI 475 (1065)
Q Consensus 412 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~f~l~~~~----------------~~~~W 475 (1065)
++..++||......+..... +..++++++|++-..+ .+..+
T Consensus 223 ----~~~~~igE~~~~~~~~~~~~-------------------~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (381)
T d2aaaa2 223 ----SGVYCVGEIDNGNPASDCPY-------------------QKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSV 279 (381)
T ss_dssp ----HTSEEEECCCCSCHHHHGGG-------------------GGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHH
T ss_pred ----ccccccccccCCCchhhhcc-------------------ccccccccchhHHHHHHHHHhcCCccHHHHHHHHHhh
Confidence 56678898755544432221 1223456666543221 34455
Q ss_pred HhcCcCCcccchhhcccCccccchhhhh
Q psy15051 476 YCGIVDDTSALMVMNERRLSTIASRTMA 503 (1065)
Q Consensus 476 q~~m~~~~~~~~~~~nhd~~r~~sr~~~ 503 (1065)
+...........+++|||.+|..++.++
T Consensus 280 ~~~~~~~~~~~~fl~nHD~~R~~~~~~~ 307 (381)
T d2aaaa2 280 ASDCSDPTLLGNFIENHDNPRFAKYTSD 307 (381)
T ss_dssp HHHCSCGGGSEECSCCTTSCCGGGTCCC
T ss_pred hhccCCchhhccccccCCchhhhcccCC
Confidence 5555444444446699999999998864
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=7.6e-35 Score=335.52 Aligned_cols=245 Identities=16% Similarity=0.260 Sum_probs=151.1
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
||++||||||+||||+||||||+++. ..+|||++.++| .|||+|||++|||+||++|
T Consensus 22 gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~------------- 88 (393)
T d1e43a2 22 RLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSL------------- 88 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHH-------------
Confidence 99999999999999999999999974 346787777765 4899999999999999999
Q ss_pred cccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc
Q psy15051 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ 747 (1065)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~ 747 (1065)
|++||+||+|+|+||++..|+|+.....
T Consensus 89 ----------------------------------------------------H~~Gi~VilD~V~NH~~~~~~~~~~~~~ 116 (393)
T d1e43a2 89 ----------------------------------------------------HSRNVQVYGDVVLNHKAGADATEDVTAV 116 (393)
T ss_dssp ----------------------------------------------------HHTTCEEEEEECCSEECCCSEEEEEEEE
T ss_pred ----------------------------------------------------HHcCCEEEEEEeeccccCCCcccccccc
Confidence 5555566666666666665555421100
Q ss_pred c---------------------------CCCCCc----ceeecCCCCCCC----------CCCCCCC-------------
Q psy15051 748 K---------------------------IDPYTN----YYVWKDGLNGKP----------GTPPNNW------------- 773 (1065)
Q Consensus 748 ~---------------------------~~~~~d----~y~~~~~~dG~p----------~~~~~~W------------- 773 (1065)
. ..++.+ ++... +.+... ......|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (393)
T d1e43a2 117 EVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFD-GADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDY 195 (393)
T ss_dssp EEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEE-EESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCC
T ss_pred ccCccccccccccccccccccccccCCCCCCCcccccccccCC-CCCccccCCcCCcccccCcccccccccccccceecc
Confidence 0 000110 00000 000000 0000001
Q ss_pred ---ccccCCCHHHHHHHHHHHHh---------------------------------cCCceEEEeecCCCChHHHhhhcc
Q psy15051 774 ---KHINITSREVMRSQKDVVQS---------------------------------FPLILMIITEAYSPSLEKVAKYYG 817 (1065)
Q Consensus 774 ---~~ln~~n~~v~~~l~~~lk~---------------------------------~~~~~~ligE~~~~~~~~~~~y~~ 817 (1065)
..||+.||+|+++++++++. .+++++++||.|...+..+..+..
T Consensus 196 ~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~ 275 (393)
T d1e43a2 196 LMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLN 275 (393)
T ss_dssp CSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHH
T ss_pred ccccccccCChhhhHHHHHHHHhhhhhcCcceEEeeccccCCHHHHHHHHHHHHHhcCcceEEeeeecCCcHHhhhhhhh
Confidence 11899999999999987221 345889999999987777766654
Q ss_pred CCC--CccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH---HHHHHHHHHHH-
Q psy15051 818 TGD--TQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP---DLVDAMNMLTL- 891 (1065)
Q Consensus 818 ~~~--~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~---~~~kla~~ll~- 891 (1065)
... ...+|+++.+.+..++.... ...+...+..... .......+.|++|||+.|+.+..+. ...++|+++++
T Consensus 276 ~~~~~~~~~d~~l~~~~~~a~~~~~-~~~l~~~~~~~~~-~~~~~~~v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~ 353 (393)
T d1e43a2 276 KTSFNQSVFDVPLHFNLQAASSQGG-GYDMRKLLNGTVV-SKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILT 353 (393)
T ss_dssp HTTTCSEEECHHHHHHHHHHHHTTT-CSCGGGTTTTCST-TTCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHH
T ss_pred ccccceeeechHHHHHHHHHHhccc-hHHHHHHHhhccc-ccCccceeEeccCCCCcccccccCchhHHHHHHHHHHHHH
Confidence 321 12344555555545443221 1122222222111 1112223459999999999987653 23344555444
Q ss_pred hCCCeEEEEcccccCccCC
Q psy15051 892 LLPGTAVTFAGDELGMESP 910 (1065)
Q Consensus 892 tlpGiP~IyyGdE~G~~~~ 910 (1065)
++||+||||||||+|+.+.
T Consensus 354 ~~pG~P~IyyGdE~G~~g~ 372 (393)
T d1e43a2 354 RESGYPQVFYGDMYGTKGD 372 (393)
T ss_dssp SSSSEEEEEHHHHHCCCCS
T ss_pred cCCCcEEEEhhHhcCCCCC
Confidence 4699999999999999985
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=7.3e-35 Score=336.67 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=157.8
Q ss_pred cCchhhhcccceEEEecccccCcCCCC------------------cccccchhhhhh--hhHhhhCCCCcCCCCCCCCCc
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNNDG------------------IGDLRGKNVRKR--YLELTLGLDPCGSSMNTDSNT 81 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~~g------------------~Gdl~gi~~kL~--yl~~~LGv~~~~~~p~~~~~~ 81 (1065)
...+.+|+++|||||+||||.|+++++ .|||+||++||| ||| +||||+||++|+.++..
T Consensus 6 ~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk-~LGv~~I~L~Pi~~~~~ 84 (406)
T d3bmva4 6 VSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLT-GMGVTAIWIPQPVENIY 84 (406)
T ss_dssp TTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTG-GGTCCEEEECCCEEECC
T ss_pred cCCCCCCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhcCHHHHH-HcCCCEEEECCcccccc
Confidence 445688999999999999999887553 399999999999 999 99999888888776543
Q ss_pred ceeeecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccc
Q psy15051 82 IYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDI 160 (1065)
Q Consensus 82 ~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~ 160 (1065)
... ..+.+.++..+|||. +.|| ++|||+|||++|||+||+ ||++||+|| +|+
T Consensus 85 ~~~----~~~~~~~~~~~~gY~--~~d~-------------~~vdp~~Gt~~dfk~LV~~aH~~Gi~Vi--------lD~ 137 (406)
T d3bmva4 85 AVL----PDSTFGGSTSYHGYW--ARDF-------------KRTNPYFGSFTDFQNLINTAHAHNIKVI--------IDF 137 (406)
T ss_dssp CCE----EETTTEEECSTTSCS--EEEE-------------EEECTTTCCHHHHHHHHHHHHHTTCEEE--------EEE
T ss_pred ccc----CCCCCCCChhhcCcc--cccc-------------cccCcccccHHHHHHHHHHHHhccccce--------eee
Confidence 211 113344567789993 4444 455558999999999997 799999999 887
Q ss_pred ccccccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy15051 161 ESLFSTKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSS 240 (1065)
Q Consensus 161 ~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1065)
|+||++ ..|+||+........|..+ .+......+...|+
T Consensus 138 -------V~NH~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------- 176 (406)
T d3bmva4 138 -------APNHTS----------PASETDPTYAENGRLYDNG---TLLGGYTNDTNGYF--------------------- 176 (406)
T ss_dssp -------CTTEEE----------ECCSSCTTSTTTTCEEETT---EEEECSTTCTTCCB---------------------
T ss_pred -------eccccc----------ccccchhhhcccCccccCC---cccccccccccccc---------------------
Confidence 888875 4555555433221111100 00101111111111
Q ss_pred cccccccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccC
Q psy15051 241 EKYWGDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAW 320 (1065)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~ 320 (1065)
..+.+. ..+.+. .. +..+. .++||||++||.|+
T Consensus 177 ~~~~~~-----~~~~~~---~~-----------~~~~~-------------------~~~~dln~~~~~v~--------- 209 (406)
T d3bmva4 177 HHYGGT-----DFSSYE---DG-----------IYRNL-------------------FDLADLNQQNSTID--------- 209 (406)
T ss_dssp CCSCBC-----CCSSHH---HH-----------HHSBS-------------------TTEEEBCTTSHHHH---------
T ss_pred ccccCc-----cccccc---cc-----------ccccc-------------------ccccccccccHHHH---------
Confidence 000000 000000 00 11122 36899999999997
Q ss_pred CCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchh
Q psy15051 321 NPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPE 400 (1065)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~ 400 (1065)
++|+++++||++.||||||+|+++++..
T Consensus 210 ------------------~~l~~~~~~~~~~giDGfR~D~~~~~~~---------------------------------- 237 (406)
T d3bmva4 210 ------------------SYLKSAIKVWLDMGIDGIRLDAVKHMPF---------------------------------- 237 (406)
T ss_dssp ------------------HHHHHHHHHHHHTTCCEEEESCGGGSCH----------------------------------
T ss_pred ------------------HHHHHHHHHHhhcCCCccccccccccch----------------------------------
Confidence 7899999999999999999999998843
Q ss_pred HHHHHHHHHHHHHhhCCccCCCCCC
Q psy15051 401 TYEMLYKWRTLVEKFGNQSADRQPS 425 (1065)
Q Consensus 401 ~~~~~~~~r~~~d~~~~~~~~~~~~ 425 (1065)
++++++++.+.+.....++||..
T Consensus 238 --~~~~~~~~~~~~~~~~~~~~e~~ 260 (406)
T d3bmva4 238 --GWQKNFMDSILSYRPVFTFGEWF 260 (406)
T ss_dssp --HHHHHHHHHHHHHSCCEEEECCC
T ss_pred --hhHHHHHHHHHHhhhcccccccc
Confidence 78888988777765566677753
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=1.2e-34 Score=331.32 Aligned_cols=210 Identities=16% Similarity=0.248 Sum_probs=149.7
Q ss_pred hhhhcccceEEEecccccCcCCCC-------------------cccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceee
Q psy15051 25 KEWWKNTVIYQILVPSFKDSNNDG-------------------IGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYIS 85 (1065)
Q Consensus 25 ~~w~~~~viYqi~~~~F~d~~~~g-------------------~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~ 85 (1065)
|+||+++|||||+||||+|+++++ .|||+||++|||||| +||||+||++|
T Consensus 4 p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk-~LGv~~i~l~P---------- 72 (382)
T d1ea9c3 4 PAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLS-KLGVNAVYFTP---------- 72 (382)
T ss_dssp CTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHH-HHTCSEEEECC----------
T ss_pred CccccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHH-hCCCCEEEeCC----------
Confidence 799999999999999999987654 399999999999999 99999555555
Q ss_pred ecccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccccc
Q psy15051 86 FWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLF 164 (1065)
Q Consensus 86 ~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~ 164 (1065)
+++++ .+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+
T Consensus 73 ------i~~~~-~~~gY--------~~~~~-------~~id~~~Gt~~df~~lv~~~h~~gi~Vi--------lD~---- 118 (382)
T d1ea9c3 73 ------LFKAT-TNHKY--------DTEDY-------FQIDPQFGDKDTLKKLVDLCHERGIRVL--------LDA---- 118 (382)
T ss_dssp ------CSSCS-SSSTT--------SCSCT-------TCCCTTTCCHHHHHHHHHHHTTTTCEEE--------EEC----
T ss_pred ------CccCC-CCCCC--------Ccccc-------cccccccCCHHHHHHHHHHHHhhcceEE--------Eee----
Confidence 44332 46898 56665 667779999999999997 799999999 787
Q ss_pred ccCCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccc
Q psy15051 165 STKPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYW 244 (1065)
Q Consensus 165 ~~~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1065)
|+||++ .+|+||++...+.. ......||. +
T Consensus 119 ---V~NH~s----------~~~~~~~~~~~~~~--------------~~~~~~~~~-----------------------~ 148 (382)
T d1ea9c3 119 ---VFNHSG----------RTFPPFVDVLKNGE--------------KSKYKDWFH-----------------------I 148 (382)
T ss_dssp ---CCSBCC----------TTTHHHHHHHTTTT--------------TCTTTTSSC-----------------------B
T ss_pred ---eccccc----------ccCcchhhhhhcCC--------------ccccccccc-----------------------c
Confidence 888865 56666654211000 000011110 0
Q ss_pred cccccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Q psy15051 245 GDILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSC 324 (1065)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~ 324 (1065)
.... .........+ ..+.|. ..+||+|+.||+|+
T Consensus 149 ~~~~-----~~~~~~~~~~---------~~~~~~-------------------~~~~d~n~~~~~v~------------- 182 (382)
T d1ea9c3 149 RSLP-----LEVVDGIPTY---------DTFAFE-------------------PLMPKLNTEHPDVK------------- 182 (382)
T ss_dssp CSSS-----CCCTTSCCSB---------CBSSSC-------------------TTSBBCCTTSHHHH-------------
T ss_pred cccc-----cccccCcccc---------cccccc-------------------cccCccccccHHHH-------------
Confidence 0000 0000000111 245555 68999999999997
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHH
Q psy15051 325 QTTVVDCQMFCYEITLLLCILEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYE 403 (1065)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 403 (1065)
++|++++++|++. ||||||+|+|+++.. +
T Consensus 183 --------------~~l~~~~~~w~~~~gvDGfR~Da~~~~~~------------------------------------~ 212 (382)
T d1ea9c3 183 --------------EYLLKAAEYWIRETGIDGWRLDVANEVSH------------------------------------Q 212 (382)
T ss_dssp --------------HHHHHHHHHHHHHHCCSEEEETTCTTSCH------------------------------------H
T ss_pred --------------HHHHHHHhhcccceeeeEEEecchhhCch------------------------------------h
Confidence 8899999999986 999999999999853 5
Q ss_pred HHHHHHHHHHhh-CCccCCCCCC
Q psy15051 404 MLYKWRTLVEKF-GNQSADRQPS 425 (1065)
Q Consensus 404 ~~~~~r~~~d~~-~~~~~~~~~~ 425 (1065)
+++++...+.+. |+..+++|..
T Consensus 213 ~~~~~~~~~~~~~p~~~~~~e~~ 235 (382)
T d1ea9c3 213 FWREFRRVVKQANPDAYILGEVW 235 (382)
T ss_dssp HHHHHHHHHHHHCTTCEEEECCC
T ss_pred hhhhhhhhhhhcCCCeeEEeeec
Confidence 666676655544 8888888864
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=2.5e-34 Score=330.77 Aligned_cols=70 Identities=21% Similarity=0.448 Sum_probs=60.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+|++||||||+||||+|||+||+++. ..++||++.|+| +|||+|||++|||+||++||++|||||||+|+
T Consensus 22 ~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~ 101 (394)
T d2d3na2 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 101 (394)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 99999999999999999999999984 346888888776 59999999999999999996666666666666
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=3.8e-34 Score=324.20 Aligned_cols=246 Identities=16% Similarity=0.223 Sum_probs=150.3
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+|++||||||+||||+||||||+++++ .+|||++.||| +|||+|||++|||+||++|
T Consensus 24 ~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~------------- 90 (390)
T d1ud2a2 24 RLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSL------------- 90 (390)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHH-------------
Confidence 999999999999999999999999854 57999999996 8999999999999999999
Q ss_pred cccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhc
Q psy15051 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQ 747 (1065)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~ 747 (1065)
|++||+||+|+|+|||+..|+|+.....
T Consensus 91 ----------------------------------------------------H~~GI~VilDvV~NHt~~~~~~~~~~~~ 118 (390)
T d1ud2a2 91 ----------------------------------------------------KSNDINVYGDVVMNHKMGADFTEAVQAV 118 (390)
T ss_dssp ----------------------------------------------------HHTTCEEEEEECCSEECCCSEEEEEEEE
T ss_pred ----------------------------------------------------HhcCCceEEEEccccccCcccchhhhhc
Confidence 6666666666666666666655422111
Q ss_pred cCCCCC-------------------------------cceeecC---------------CCCCCC-CC---CCCC----C
Q psy15051 748 KIDPYT-------------------------------NYYVWKD---------------GLNGKP-GT---PPNN----W 773 (1065)
Q Consensus 748 ~~~~~~-------------------------------d~y~~~~---------------~~dG~p-~~---~~~~----W 773 (1065)
...++. +|+.+.. ...... .. .... -
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
T d1ud2a2 119 QVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLG 198 (390)
T ss_dssp EEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGEEEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSS
T ss_pred ccCcccccccccccccccccccccCCccCCcCCCCcccccccCCCCccccCCCCceeeccCCcccccccccccccccccc
Confidence 000011 1111000 000000 00 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHH---------------------------------hcCCceEEEeecCCCChHHHhhhccCC-
Q psy15051 774 KHINITSREVMRSQKDVVQ---------------------------------SFPLILMIITEAYSPSLEKVAKYYGTG- 819 (1065)
Q Consensus 774 ~~ln~~n~~v~~~l~~~lk---------------------------------~~~~~~~ligE~~~~~~~~~~~y~~~~- 819 (1065)
..+++.++.+++++.+++. +..+.++.++|.+.........+....
T Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 278 (390)
T d1ud2a2 199 SNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMN 278 (390)
T ss_dssp EEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHHHHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTT
T ss_pred ccccccCHHHHHHHHHhhhhccceeccccccccchhhcChHHHHHHHHHHhhhhhhheeeeccccCCccccccccccccc
Confidence 0189999999999888721 133478889999987554333332211
Q ss_pred -CCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH----HHHHHHHHHHHhCC
Q psy15051 820 -DTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP----DLVDAMNMLTLLLP 894 (1065)
Q Consensus 820 -~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~----~~~kla~~ll~tlp 894 (1065)
.....+....+.+....... ....+...+....... .....++|++|||+.|+.++.+. .+.++++++++++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~p 356 (390)
T d1ud2a2 279 WEMSLFDVPLNYNFYRASQQG-GSYDMRNILRGSLVEA-HPMHAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREG 356 (390)
T ss_dssp TCSEEECHHHHHHHHHHHHHC-TTSCGGGTTTTCHHHH-CGGGEEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSS
T ss_pred cccchhhHHHHHHHHHHhccc-chHHHHHHHhhccccC-CccceEEEccCCccccccccccCcCHHHHHHHHHHHHHhCC
Confidence 11223344444444433221 1111111111111100 11223459999999999887642 24556667778899
Q ss_pred CeEEEEcccccCccCC
Q psy15051 895 GTAVTFAGDELGMESP 910 (1065)
Q Consensus 895 GiP~IyyGdE~G~~~~ 910 (1065)
|+||||||||+||.+.
T Consensus 357 G~P~iy~GdE~G~~~~ 372 (390)
T d1ud2a2 357 GYPNVFYGDYYGIPND 372 (390)
T ss_dssp SEEEEEHHHHHCBGGG
T ss_pred CCeEEEchhhcCCCCC
Confidence 9999999999999874
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.1e-33 Score=325.57 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=153.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCC-CCCCCcCCCCc---------ccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPN-GDIGYDISNHT---------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~-~~~GY~~~dy~---------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+|++||||||+||||+||||||+++++ .+|||++.||| +|||+|||++||++||++||++|||||||+|+
T Consensus 25 ~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~ 104 (393)
T d1hvxa2 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (393)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 999999999999999999999998854 47999999996 69999999999999999997777777777777
Q ss_pred cccccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEe-ccCCCCCC-------c
Q psy15051 668 KNRSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEF-VPNHSSNK-------H 739 (1065)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDv-V~NHts~~-------~ 739 (1065)
||+. .+..+.|++....+..... . ...+..-+... -....+.. .
T Consensus 105 NHt~-~~~~~~w~~~~~~~~~~~~-------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (393)
T d1hvxa2 105 DHKG-GADGTEWVDAVEVNPSDRN-------------Q--------------EISGTYQIQAWTKFDFPGRGNTYSSFKW 156 (393)
T ss_dssp SEEC-CCSEEEEEEEEEEETTEEE-------------E--------------ECSCCEEEEEEEEBCCTTTTTSSCCCCB
T ss_pred cccc-ccCCccceeecccCccccc-------------c--------------ccCCCcccccccccCCCCCCCCCCCccc
Confidence 3321 1223334322221110000 0 00000000000 00000000 0
Q ss_pred hhhHhhh---ccCCCCCcceeecCCCCCC---CCCC-----CCCCccccCCCHHHHHHHHHHHHh---------------
Q psy15051 740 DWFIKSA---QKIDPYTNYYVWKDGLNGK---PGTP-----PNNWKHINITSREVMRSQKDVVQS--------------- 793 (1065)
Q Consensus 740 ~wf~~~~---~~~~~~~d~y~~~~~~dG~---p~~~-----~~~W~~ln~~n~~v~~~l~~~lk~--------------- 793 (1065)
.|+.... ........++.+....... .... ......||+.||+|+++|.++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a 236 (393)
T d1hvxa2 157 RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAV 236 (393)
T ss_dssp CGGGEEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTG
T ss_pred ccccCCCCcccccCCcCccccccCCcCccccccccccceeeccccceeccCChHHHHHHHHHHHHHHHhhCCceeeeecc
Confidence 0100000 0000001111111100000 0000 001112899999999999988321
Q ss_pred ------------------cCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHH----hhcCCChHHHHHHHHH
Q psy15051 794 ------------------FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNK----FGATSNAKDLENVVNA 851 (1065)
Q Consensus 794 ------------------~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~l~~~l~~ 851 (1065)
..++++++||.|..++.....+.... .+....|++.+... +.... ...+...+..
T Consensus 237 ~~i~~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~~~~-~~~~~~~~~~ 313 (393)
T d1hvxa2 237 KHIKFSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKT--NGTMSLFDAPLHNKFYTASKSGG-TFDMRTLMTN 313 (393)
T ss_dssp GGSCTTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHT--TTCSEEECHHHHHHHHHHHHTTT-CSCGGGTTTT
T ss_pred ccCChhHHHHHHHHHHHhcCCcceeeeeccCccHHHHHHHhhcc--ccccchhhHHHHHHHHHHHccCC-HHHHHHHHHh
Confidence 22378999999998777776665432 22344455544443 32211 1111111111
Q ss_pred HhhcCCCCCcccccccCCChhhHhhhcCH---HHHHHHHHHH-HhCCCeEEEEcccccCccCC
Q psy15051 852 YLKSLPSGKWSSWMVGGHSITRIATRYSP---DLVDAMNMLT-LLLPGTAVTFAGDELGMESP 910 (1065)
Q Consensus 852 ~~~~~~~~~~~~~flenHD~~Rl~s~~~~---~~~kla~~ll-~tlpGiP~IyyGdE~G~~~~ 910 (1065)
.... ......++|++|||+.|+.+..+. ...+++++++ +++|||||||||||+|+.+.
T Consensus 314 ~~~~-~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~ 375 (393)
T d1hvxa2 314 TLMK-DQPTLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQY 375 (393)
T ss_dssp CHHH-HCGGGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGG
T ss_pred hhcc-CCcccEeEECcCCCCccccccccCCCHHHHHHHHHHHHHhCCCeEEEEhhHhcCCCCc
Confidence 0000 011233459999999998876542 2345555554 45699999999999999875
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=99.97 E-value=1.1e-31 Score=307.29 Aligned_cols=244 Identities=18% Similarity=0.149 Sum_probs=163.0
Q ss_pred cHHhhhH-HHHHcCcCEEEeCCCCcCCCC-----CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccccc
Q psy15051 598 GIIEKID-YLKELGVETLWLTPFYSGPNG-----DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRS 671 (1065)
Q Consensus 598 Gl~~kLd-YLk~LGvnaI~L~PI~~~~~~-----~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~ 671 (1065)
+|+++|+ |||+||||+||||||++++.. +|||++.|| +|||+|||++|||+||++|
T Consensus 23 ~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY-~id~~~Gt~~df~~LV~~a----------------- 84 (378)
T d1jaea2 23 DIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRSGDESAFTDMTRRC----------------- 84 (378)
T ss_dssp HHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSEETTEEHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccc-eeCCCCCCHHHHHHHHHHH-----------------
Confidence 8999998 999999999999999998532 378999997 6999999999999999999
Q ss_pred cccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccCCC
Q psy15051 672 HQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKIDP 751 (1065)
Q Consensus 672 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~~~ 751 (1065)
|++||+||+|+|+||++..++|+.........
T Consensus 85 ------------------------------------------------H~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~ 116 (378)
T d1jaea2 85 ------------------------------------------------NDAGVRIYVDAVINHMTGMNGVGTSGSSADHD 116 (378)
T ss_dssp ------------------------------------------------HHTTCEEEEEECCSBCCSSCEEBTTSCEEBTT
T ss_pred ------------------------------------------------HhcCceeeeeecccccccccCCCccccccCCC
Confidence 88888999999999999999887654322222
Q ss_pred CCcceeecCCC-CCCCCCCCCCCc--------------cccCCCHHHHHHHHHHHHh-----------------------
Q psy15051 752 YTNYYVWKDGL-NGKPGTPPNNWK--------------HINITSREVMRSQKDVVQS----------------------- 793 (1065)
Q Consensus 752 ~~d~y~~~~~~-dG~p~~~~~~W~--------------~ln~~n~~v~~~l~~~lk~----------------------- 793 (1065)
..+++.+.... +..+.....+|. .||+.+|+|+++|+++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~np~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~ 196 (378)
T d1jaea2 117 GMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLS 196 (378)
T ss_dssp TTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHH
T ss_pred cccCcCCCCCccccCCCCCcCCCCCccccccccccccCccccCCHHHHHHHHHHHHHHHHhCCCceeeeeecccCHHHHH
Confidence 22221111000 000011112222 1999999999999998432
Q ss_pred --------cC--------CceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCC
Q psy15051 794 --------FP--------LILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLP 857 (1065)
Q Consensus 794 --------~~--------~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 857 (1065)
.. ...+++||.+.........+........+++.+...+...+........+........ ..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 274 (378)
T d1jaea2 197 VIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEWG--LL 274 (378)
T ss_dssp HHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSSEEECHHHHHHHHHHHTTTSCGGGGGGCSGGGT--CC
T ss_pred HHHHhhhhhccccccccccccceeeehhccccccccchhccccchhcchhhhhhhhhhhccCccHHHHHHHhhhhc--cC
Confidence 00 1468999999864443333332222233444444455555544333333332222111 12
Q ss_pred CCCcccccccCCChhhHhhhc-----CHHHHHHHHHHHHhCC-CeEEEEcccccCccC
Q psy15051 858 SGKWSSWMVGGHSITRIATRY-----SPDLVDAMNMLTLLLP-GTAVTFAGDELGMES 909 (1065)
Q Consensus 858 ~~~~~~~flenHD~~Rl~s~~-----~~~~~kla~~ll~tlp-GiP~IyyGdE~G~~~ 909 (1065)
.....+.|++|||++|+.+.. ..++.++|++++||.| |+|+||+|.|+....
T Consensus 275 ~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P~iy~g~~~~~~~ 332 (378)
T d1jaea2 275 EGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIMSSFDFTDND 332 (378)
T ss_dssp CGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEEEEEECBCCSSTT
T ss_pred CccceeEeeccCCCCCcCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEeccccCCCC
Confidence 223345699999999986532 4568899999999999 999999999987654
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=99.97 E-value=5.1e-32 Score=307.24 Aligned_cols=244 Identities=15% Similarity=0.118 Sum_probs=154.8
Q ss_pred ccHHhhh-HHHHHcCcCEEEeCCCCcCCCC---CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccc
Q psy15051 597 LGIIEKI-DYLKELGVETLWLTPFYSGPNG---DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSH 672 (1065)
Q Consensus 597 ~Gl~~kL-dYLk~LGvnaI~L~PI~~~~~~---~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~ 672 (1065)
+.|++++ +|||+||||+||||||++++++ +|||+|+|| +|||+|||++|||+||++|
T Consensus 14 ~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy-~vd~~~Gt~~dfk~LV~~a------------------ 74 (354)
T d1g94a2 14 QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRC------------------ 74 (354)
T ss_dssp HHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcc-eeCCCCCCHHHHHHHHHHH------------------
Confidence 4788877 7999999999999999998765 479999996 7999999999999999999
Q ss_pred ccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhcc-CCC
Q psy15051 673 QLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQK-IDP 751 (1065)
Q Consensus 673 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~-~~~ 751 (1065)
|++||+||+|+|+||++..++|+.....- ...
T Consensus 75 -----------------------------------------------H~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~ 107 (354)
T d1g94a2 75 -----------------------------------------------SAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKS 107 (354)
T ss_dssp -----------------------------------------------HHTTCEEEEEEECSEECSSCEEBTTSCEEBTTB
T ss_pred -----------------------------------------------hccCceeEEEeeccccccccCCCcccccccccC
Confidence 88888888888899999888887653211 111
Q ss_pred CCcceeecCCCCCCCCCCCC-----------CC---ccccCCCHHHHHHHHHHHHh------------------------
Q psy15051 752 YTNYYVWKDGLNGKPGTPPN-----------NW---KHINITSREVMRSQKDVVQS------------------------ 793 (1065)
Q Consensus 752 ~~d~y~~~~~~dG~p~~~~~-----------~W---~~ln~~n~~v~~~l~~~lk~------------------------ 793 (1065)
+..+........+. ..... .+ ..||+.+++||++|+++++.
T Consensus 108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~dln~~n~~Vr~~l~d~~~~~~e~gvdGfR~Da~~~~~~~~~~~ 186 (354)
T d1g94a2 108 FPIYSPQDFHESCT-INNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQAIGVKGFRFDASKHVAASDIQS 186 (354)
T ss_dssp CSSCCGGGBCCCCB-CCTTHHHHCHHHHHHSBSTTCEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEEETGGGSCHHHHHH
T ss_pred CCcCCccccccCCC-CCCccccccccceeccccCCCCccccCCHHHHHHHHHHHHHhhhhccchhhccchhhCCHHHHHH
Confidence 11111100000000 00000 00 11999999999999988322
Q ss_pred ----cCCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcCCChHHHHHHHHHHhhcCCCCCcccccccCC
Q psy15051 794 ----FPLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATSNAKDLENVVNAYLKSLPSGKWSSWMVGGH 869 (1065)
Q Consensus 794 ----~~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~flenH 869 (1065)
..+..++++|.+....+....+...+....+++.+...+...+.. .....+....... . .......+.|++||
T Consensus 187 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~-~~~~~~~v~Fl~NH 263 (354)
T d1g94a2 187 LMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRN-GSLAWLSNFGEGW-G-FMPSSSAVVFVDNH 263 (354)
T ss_dssp HHHTSCSCCEEEECCCCSSCCSSCGGGGGGGSEEECHHHHHHHHHHHHH-SCGGGGGGTTGGG-T-CCCGGGEEECSCCT
T ss_pred HHhhhcccceeEEEEeccCcccccchhhcCCCcccchhhcchhhhHhhh-hhHHHHHHHhhhh-c-cCCccceEEeeccc
Confidence 233678999998774432221111111112233333333333321 1222222211111 1 11122334599999
Q ss_pred ChhhHhhhcC-------HHHHHHHHHHHHhCC-CeEEEEcccccCccCC
Q psy15051 870 SITRIATRYS-------PDLVDAMNMLTLLLP-GTAVTFAGDELGMESP 910 (1065)
Q Consensus 870 D~~Rl~s~~~-------~~~~kla~~ll~tlp-GiP~IyyGdE~G~~~~ 910 (1065)
|++|+.+..+ .++.++|+++++++| |+|+||||+|++....
T Consensus 264 D~~R~~~~~~~~~~~~~~~~~~lA~afil~~p~G~P~iyyG~ef~~~~~ 312 (354)
T d1g94a2 264 DNQRGHGGAGNVITFEDGRLYDLANVFMLAYPYGYPKVMSSYDFHGDTD 312 (354)
T ss_dssp TGGGTSSCCTTSCCGGGTHHHHHHHHHHHHSCSSEEEEEECBCCTTCTT
T ss_pred ccccccccCcccccccchHHHHHHHHHHHHcCCCEEEEEeecCcCCCCc
Confidence 9999987654 246788889999998 9999999999987653
|
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.97 E-value=2.6e-32 Score=316.60 Aligned_cols=186 Identities=15% Similarity=0.239 Sum_probs=142.8
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc-ccccccCcccee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT-TAVKTWSRRWIV 106 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~-~~~~~~gy~~~v 106 (1065)
|+++|||||+|++|+++ |||+||++|||||| +||||.||++ |++. ....+|||
T Consensus 14 ~~~~viYe~~~~~f~~~-----Gd~~g~~~~ldyl~-~LGv~~i~L~----------------Pv~~~~~~~~~GY---- 67 (420)
T d2bhua3 14 LADCVFYEVHVGTFTPE-----GTYRAAAEKLPYLK-ELGVTAIQVM----------------PLAAFDGQRGWGY---- 67 (420)
T ss_dssp GGGCCEEEECHHHHSSS-----CSHHHHHHTHHHHH-HHTCCEEEEC----------------CCEECSSSCCCST----
T ss_pred ccccEEEEEehhhcCCC-----CCHHHHHHhHHHHH-HcCCCEEEeC----------------CCCcCCCCCCCCC----
Confidence 99999999999999987 99999999999999 9999944444 5544 33467899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQ 185 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~ 185 (1065)
++.+| ++|||+|||++||++||+ ||++||+||
T Consensus 68 ----~~~d~-------~~vdp~~G~~~d~~~lv~~aH~~gi~Vi------------------------------------ 100 (420)
T d2bhua3 68 ----DGAAF-------YAPYAPYGRPEDLMALVDAAHRLGLGVF------------------------------------ 100 (420)
T ss_dssp ----TCCEE-------EEECGGGCCHHHHHHHHHHHHHTTCEEE------------------------------------
T ss_pred ----CcccC-------CCcCcccCCHHHHHHHHHHHHhcccccc------------------------------------
Confidence 55555 566779999999999997 799999999
Q ss_pred cccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcchhhhccccCC
Q psy15051 186 NFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNSLQALQRVYP 265 (1065)
Q Consensus 186 ~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1065)
+|+|+||+++.|+|+. .. . ..+|
T Consensus 101 -------------------lD~V~NH~~~~~~~~~----------~~----~-----------------------~~~~- 123 (420)
T d2bhua3 101 -------------------LDVVYNHFGPSGNYLS----------SY----A-----------------------PSYF- 123 (420)
T ss_dssp -------------------EEECCSCCCSSSCCHH----------HH----C-----------------------GGGE-
T ss_pred -------------------ccccccccCCCCcccc----------cc----c-----------------------cccc-
Confidence 5556666666677761 00 0 0001
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL 345 (1065)
Q Consensus 266 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (1065)
...+. ...+||||++||+|+ ++|++++
T Consensus 124 --------~~~~~------------------~~~~~dlN~~np~v~---------------------------~~~~~~~ 150 (420)
T d2bhua3 124 --------TDRFS------------------SAWGMGLDYAEPHMR---------------------------RYVTGNA 150 (420)
T ss_dssp --------EEEEE------------------CSSSEEECTTSHHHH---------------------------HHHHHHH
T ss_pred --------ccccc------------------ccccccccccChHHH---------------------------HHHHHHh
Confidence 11111 045789999999997 8899999
Q ss_pred HHHHH-cCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh-CCccCCCC
Q psy15051 346 EFWLK-RGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF-GNQSADRQ 423 (1065)
Q Consensus 346 ~~Wl~-~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~-~~~~~~~~ 423 (1065)
+||++ .||||||+|+|++|.++.. .+++++|++.+.+. |+..+++|
T Consensus 151 ~~Wl~~~GVDGfR~D~~~~l~~~~~--------------------------------~~~~~~~~~~~~~~~p~~~~i~E 198 (420)
T d2bhua3 151 RMWLRDYHFDGLRLDATPYMTDDSE--------------------------------THILTELAQEIHELGGTHLLLAE 198 (420)
T ss_dssp HHHHHHHCCSEEEETTGGGCCCCSS--------------------------------SCHHHHHHHHHHTTCSCCEEEEE
T ss_pred heeeecccccEEEEeeeeeeccccc--------------------------------cccHHHHHHHHHhhcCCceeeec
Confidence 99995 6999999999999987421 14788998888776 88899998
Q ss_pred CCccc
Q psy15051 424 PSCAD 428 (1065)
Q Consensus 424 ~~~~~ 428 (1065)
.....
T Consensus 199 ~~~~~ 203 (420)
T d2bhua3 199 DHRNL 203 (420)
T ss_dssp CSSCC
T ss_pred ccCCc
Confidence 75433
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=99.97 E-value=6.3e-32 Score=317.74 Aligned_cols=198 Identities=17% Similarity=0.244 Sum_probs=139.4
Q ss_pred chhhhcccceEEEecccccCcC----CCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccc
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSN----NDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKT 99 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~----~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 99 (1065)
++.||+++||||||||+|.+++ +++.|||+||++|||||| +||||+||++|..++..... ... +.......+
T Consensus 10 ~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~-~LGvnaiwl~Pi~~~~~~~~--~~~-~~~~~~~~y 85 (475)
T d1bf2a3 10 PTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLA-SLGVTAVEFLPVQETQNDAN--DVV-PNSDANQNY 85 (475)
T ss_dssp CCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHH-HHTCCEEEESCCBCBSCTTT--TSS-TTCCTTCCC
T ss_pred CCCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhhhHHHH-HcCCCEEEeCCCCcCCCccc--ccc-cccccCcCC
Confidence 3579999999999999999987 457899999999999999 99999888888765432100 000 223334567
Q ss_pred cCccceeecccccCCCcccccccccccccc-------CcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCC
Q psy15051 100 WSRRWIVVNHEQISRLPTRTVSSLNIICKY-------FYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSH 171 (1065)
Q Consensus 100 ~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~-------Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH 171 (1065)
||| ++.+| ++|||+| ||.+||++||+ ||++||+|| +|+ |+||
T Consensus 86 ~GY--------~~~d~-------~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVi--------lD~-------V~NH 135 (475)
T d1bf2a3 86 WGY--------MTENY-------FSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY--------MDV-------VYNH 135 (475)
T ss_dssp SCC--------CBSCS-------SCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE--------EEE-------CCSS
T ss_pred CCC--------CcccC-------CCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEE--------EEe-------cccc
Confidence 999 55555 5666677 99999999997 799999999 555 5555
Q ss_pred ccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc-ccccccc
Q psy15051 172 SMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY-WGDILER 250 (1065)
Q Consensus 172 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 250 (1065)
++..|+|+.. .+++.+++ |.+.
T Consensus 136 ----------------------------------------~~~~~~~~~~--------------~~~~~~~~~~~~~--- 158 (475)
T d1bf2a3 136 ----------------------------------------TAEGGTWTSS--------------DPTTATIYSWRGL--- 158 (475)
T ss_dssp ----------------------------------------CTTCSBSSSS--------------CSSCBBCSSHHHH---
T ss_pred ----------------------------------------ccCCCccccc--------------CCCcCccccccCc---
Confidence 4455555510 01111222 1110
Q ss_pred cCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCcccccc
Q psy15051 251 TVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVD 330 (1065)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~ 330 (1065)
...++........+.+.|. ..+||||+.||+|+
T Consensus 159 ---------~~~~~~~~~~~~~~~~~~~-------------------~~~~dln~~np~V~------------------- 191 (475)
T d1bf2a3 159 ---------DNATYYELTSGNQYFYDNT-------------------GIGANFNTYNTVAQ------------------- 191 (475)
T ss_dssp ---------HHHHHBCBCTTSSSBCCSS-------------------SSSCCBCTTSHHHH-------------------
T ss_pred ---------ccccccccCCCccccccCC-------------------CccCccchhhhHHH-------------------
Confidence 0011111112233355566 68999999999997
Q ss_pred chhhhHHHHHHHHHHHHHHHc-CCCeeeecCccccccC
Q psy15051 331 CQMFCYEITLLLCILEFWLKR-GVDGFGMDSVLKLYEH 367 (1065)
Q Consensus 331 ~~~~~~~~~~~~~~l~~Wl~~-GvDGfRlDav~~l~~~ 367 (1065)
++++++++||+++ ||||||+|++++|.+.
T Consensus 192 --------~~~~~~~~~w~~~~gvDGfR~D~~~~~~~~ 221 (475)
T d1bf2a3 192 --------NLIVDSLAYWANTMGVDGFRFDLASVLGNS 221 (475)
T ss_dssp --------HHHHHHHHHHHHTSCCCEEEETTGGGGGBC
T ss_pred --------HHHHHHHHhhhhhcCCceEEEehHhhhchh
Confidence 7899999999975 9999999999999984
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.4e-30 Score=300.39 Aligned_cols=244 Identities=14% Similarity=0.053 Sum_probs=155.6
Q ss_pred cHHhhh-HHHHHcCcCEEEeCCCCcCCCC-------CCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q psy15051 598 GIIEKI-DYLKELGVETLWLTPFYSGPNG-------DIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKN 669 (1065)
Q Consensus 598 Gl~~kL-dYLk~LGvnaI~L~PI~~~~~~-------~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~ 669 (1065)
+|+++| +||++||||+|||+||.++... +|||+++|| +|+|+|||++|||+||++|
T Consensus 23 ~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY-~v~~~~Gt~~dfk~Lv~~a--------------- 86 (403)
T d1hx0a2 23 DIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFRDMVTRC--------------- 86 (403)
T ss_dssp HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCC-ccCCCCCCHHHHHHHHHHH---------------
Confidence 777665 7999999999999999997432 379999995 7999999999999999999
Q ss_pred cccccccchhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhhHhhhccC
Q psy15051 670 RSHQLYCHMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWFIKSAQKI 749 (1065)
Q Consensus 670 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf~~~~~~~ 749 (1065)
|++||+||+|+|+||++.+++|+.......
T Consensus 87 --------------------------------------------------H~~GI~VIlDvV~NH~~~~~~~~~~~~~~~ 116 (403)
T d1hx0a2 87 --------------------------------------------------NNVGVRIYVDAVINHMCGSGAAAGTGTTCG 116 (403)
T ss_dssp --------------------------------------------------HHTTCEEEEEECCSEEEETTCCCBSCBSSC
T ss_pred --------------------------------------------------HhcCCEEEEEEecccccccccccccccccC
Confidence 777778888888888888777765433221
Q ss_pred CCCCcceee-----------cCCCCCCCCCCCCCCcc--------------ccCCCHHHHHHHHHHHHh-----------
Q psy15051 750 DPYTNYYVW-----------KDGLNGKPGTPPNNWKH--------------INITSREVMRSQKDVVQS----------- 793 (1065)
Q Consensus 750 ~~~~d~y~~-----------~~~~dG~p~~~~~~W~~--------------ln~~n~~v~~~l~~~lk~----------- 793 (1065)
..+...+.+ ..............|.. ||+.||+|++++.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~ 196 (403)
T d1hx0a2 117 SYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRI 196 (403)
T ss_dssp CCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHSBGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccccccCCCCCCCCccCCCCcccCCCCCccccCCccceeeccccccCcccCCCHHHHHHHHHHHHHHHHcCCCcccc
Confidence 111111100 00000000001112221 899999999999988332
Q ss_pred --------------------c-------CCceEEEeecCCCChHHHhhhccCCCCccccccccHHHHHHhhcCC--ChHH
Q psy15051 794 --------------------F-------PLILMIITEAYSPSLEKVAKYYGTGDTQGTHLSVNYEIMNKFGATS--NAKD 844 (1065)
Q Consensus 794 --------------------~-------~~~~~ligE~~~~~~~~~~~y~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~ 844 (1065)
. ....++++|.+.........+...+....+++.+...+...+.... ....
T Consensus 197 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~ 276 (403)
T d1hx0a2 197 DASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGEAIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSY 276 (403)
T ss_dssp TTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSSSSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGG
T ss_pred ccccccCHHHHHHHHHHHHhhCcccccccCCceEEEEEeccCcchhhcccccCCCccccccccchhhHHHhhccchhHHH
Confidence 0 1156899999876444333332222223455555555555553321 1222
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCChhhHhhhcCH--------HHHHHHHHHHHhCC-CeEEEEcccccCccC
Q psy15051 845 LENVVNAYLKSLPSGKWSSWMVGGHSITRIATRYSP--------DLVDAMNMLTLLLP-GTAVTFAGDELGMES 909 (1065)
Q Consensus 845 l~~~l~~~~~~~~~~~~~~~flenHD~~Rl~s~~~~--------~~~kla~~ll~tlp-GiP~IyyGdE~G~~~ 909 (1065)
+.... ... ........+.|++|||++|+.+..+. ++.+++++++|+.| |+|+||||.|.++.+
T Consensus 277 ~~~~~-~~~-~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~~~~a~af~lt~p~G~P~iy~gy~~~~~~ 348 (403)
T d1hx0a2 277 LKNWG-EGW-GFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARLYKIAVGFMLAHPYGFTRVMSSYRWARNF 348 (403)
T ss_dssp GGGTT-GGG-TCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHHHHHHHHHHHHSCSSEEEEEECBCCCCCE
T ss_pred HHHhc-ccc-ccCCccceEEecccCCCcccccCCCccccccccHHHHHHHHHHHHHCCCCccceEeeecccccc
Confidence 21111 111 11222344569999999999887653 46788999999999 999998777765544
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=99.96 E-value=1.2e-30 Score=292.46 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=77.3
Q ss_pred EEEeccccc-CcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeeccccc
Q psy15051 34 YQILVPSFK-DSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQI 112 (1065)
Q Consensus 34 Yqi~~~~F~-d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v 112 (1065)
|||++++|. |++.++.||++||++|||||| +||||+ +|++ |+++++ .+||| ++
T Consensus 1 ~~~~~~~f~~~~~~~~~g~~~~i~~kLdyl~-~lGv~~---------------i~L~-Pi~~~~-~~~gY--------~~ 54 (347)
T d1ht6a2 1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIA-AAGVTH---------------VWLP-PPSHSV-SNEGY--------MP 54 (347)
T ss_dssp CCCEEECCCTTGGGCTTCHHHHHHTTHHHHH-HTTCCE---------------EEEC-CCSCBS-STTSS--------SB
T ss_pred CeeEEeccccCcCCCCCCCHHHHHHhHHHHH-HcCCCE---------------EEEC-CCCcCC-CCCCC--------Cc
Confidence 899999999 999999999999999999999 999994 4444 555554 57899 55
Q ss_pred CCCcccccccccccc-ccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 113 SRLPTRTVSSLNIIC-KYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 113 ~~~~~~~~~~~~i~~-~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.+| ++||| +|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 55 ~d~-------~~id~~~~G~~~~f~~lv~~~H~~gi~Vi--------lD~-------V~NH~~ 95 (347)
T d1ht6a2 55 GRL-------YDIDASKYGNAAELKSLIGALHGKGVQAI--------ADI-------VINHRC 95 (347)
T ss_dssp CCT-------TCGGGCTTCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred cCc-------CcCCcccCCCHHHHHHHHHHHhhcceEEe--------eec-------cccccC
Confidence 555 56665 6999999999997 699999999 887 888865
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=99.96 E-value=8.3e-30 Score=292.63 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=71.6
Q ss_pred hcccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccccc-ccccCcccee
Q psy15051 28 WKNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTA-VKTWSRRWIV 106 (1065)
Q Consensus 28 ~~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~gy~~~v 106 (1065)
++++|||||||++|+++ |||+||++|||||| +||||.||++ |++.++ ..+|||
T Consensus 9 ~~~~viYe~~v~~f~~~-----Gd~~gi~~~ldyi~-~LGv~~i~l~----------------Pv~~~~~~~~~GY---- 62 (400)
T d1eh9a3 9 KEDLIIYEIHVGTFTPE-----GTFEGVIRKLDYLK-DLGITAIEIM----------------PIAQFPGKRDWGY---- 62 (400)
T ss_dssp SSSCCEEEECTTTSSSS-----CSHHHHHHTHHHHH-HHTCCEEEEC----------------CCBCCSSSCCCST----
T ss_pred CcCeEEEEEehhhhCCC-----CCHHHHHHHhHHHH-HcCCCEEEeC----------------CcCcCCCCCCCCC----
Confidence 44899999999999987 99999999999999 9999944444 555443 357899
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
++.+| ++|||+|||++|||+||+ ||++||+||
T Consensus 63 ----~~~d~-------~~vd~~~Gt~~dlk~lv~~~h~~gi~Vi 95 (400)
T d1eh9a3 63 ----DGVYL-------YAVQNSYGGPEGFRKLVDEAHKKGLGVI 95 (400)
T ss_dssp ----TCCCT-------TCBCSTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred ----CCCCC-------CCcCcccCCHHHHHHHHHHHHhcCCcee
Confidence 56666 667779999999999997 799999999
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.3e-29 Score=285.49 Aligned_cols=220 Identities=17% Similarity=0.187 Sum_probs=148.4
Q ss_pred hhhccc-----ceEEEeccccc-CcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccc-
Q psy15051 26 EWWKNT-----VIYQILVPSFK-DSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAV- 97 (1065)
Q Consensus 26 ~w~~~~-----viYqi~~~~F~-d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~- 97 (1065)
.|+..+ +||||||++|+ +++++++|||+||++|| |||+ +|||| ++|++ |++.++.
T Consensus 7 ~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~-~LGv~---------------~iwl~-Pi~~~~~~ 69 (396)
T d1m7xa3 7 RKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAK-WMGFT---------------HLELL-PINEHPFD 69 (396)
T ss_dssp HHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHH-HTTCS---------------EEEES-CCEECSCG
T ss_pred cccCCCCCCCcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHH-HcCCC---------------EEEeC-CCCCCCCC
Confidence 355555 99999999996 88899999999999997 9999 99999 44444 5555443
Q ss_pred cccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccc
Q psy15051 98 KTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLT 176 (1065)
Q Consensus 98 ~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~ 176 (1065)
.+||| ++.+| ++|||+|||++||++||+ ||++||+|| +|+ |+||
T Consensus 70 ~~hGY--------~~~d~-------~~vdp~~Gt~~d~~~LV~~aH~~gi~Vi--------lD~-------V~NH----- 114 (396)
T d1m7xa3 70 GSWGY--------QPTGL-------YAPTRRFGTRDDFRYFIDAAHAAGLNVI--------LDW-------VPGH----- 114 (396)
T ss_dssp GGTTS--------SCSEE-------EEECGGGSCHHHHHHHHHHHHHTTCEEE--------EEE-------CTTS-----
T ss_pred CCCCc--------CcCcC-------CCcCcccCCHHHHHHHHHHHhhhhhhhh--------hcc-------cccc-----
Confidence 57899 66666 677779999999999997 799999999 555 5555
Q ss_pred cCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccccccccCCcch
Q psy15051 177 DSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGDILERTVSSNS 256 (1065)
Q Consensus 177 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1065)
++..|+|+.... ...+++...
T Consensus 115 -----------------------------------~~~~~~~~~~~~---------------~~~~~~~~~--------- 135 (396)
T d1m7xa3 115 -----------------------------------FPTDDFALAEFD---------------GTNLYEHSD--------- 135 (396)
T ss_dssp -----------------------------------CCCSTTSSTTGG---------------GSCSSBCC----------
T ss_pred -----------------------------------cCCccccccccc---------------CCccccccC---------
Confidence 455555551100 000000000
Q ss_pred hhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhH
Q psy15051 257 LQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCY 336 (1065)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1065)
....+ . +. ...+++|+.||.++
T Consensus 136 ---~~~~~---------~--~~-------------------~~~~~~~~~~~~~~------------------------- 157 (396)
T d1m7xa3 136 ---PREGY---------H--QD-------------------WNTLIYNYGRREVS------------------------- 157 (396)
T ss_dssp -------------------------------------------CCCBCTTSHHHH-------------------------
T ss_pred ---CCCCC---------C--CC-------------------CCCccccCCCchhH-------------------------
Confidence 00000 0 01 35678999999997
Q ss_pred HHHHHHHHHHHHHHc-CCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 337 EITLLLCILEFWLKR-GVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 337 ~~~~~~~~l~~Wl~~-GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
.++.+++++|++. ||||||+|++.+.+............ ..........+.++++++++..+...
T Consensus 158 --~~~~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (396)
T d1m7xa3 158 --NFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWI------------PNEFGGRENLEAIEFLRNTNRILGEQ 223 (396)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEECCSHHHHCC--------------------------CTTCCHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhCCcceeeechhhhccchhcccccccc------------cccccccccchHHHHHHHHHHHHhhh
Confidence 7899999999976 99999999999987743322111000 00112456677889999998888764
Q ss_pred -CCccCCCCCCccc
Q psy15051 416 -GNQSADRQPSCAD 428 (1065)
Q Consensus 416 -~~~~~~~~~~~~~ 428 (1065)
|+...++|.....
T Consensus 224 ~~~~~~~~e~~~~~ 237 (396)
T d1m7xa3 224 VSGAVTMAEESTDF 237 (396)
T ss_dssp STTCEEEECCSSCC
T ss_pred CCCceEEEeecCCC
Confidence 8888888864433
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=9.3e-31 Score=314.74 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=155.4
Q ss_pred cCchhhhcccceEEEecccccCcCCCCc--------------ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeec
Q psy15051 22 CNQKEWWKNTVIYQILVPSFKDSNNDGI--------------GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFW 87 (1065)
Q Consensus 22 ~~~~~w~~~~viYqi~~~~F~d~~~~g~--------------Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~ 87 (1065)
...|+||+++||||||||+|++++++|+ |||+||++|||||| +||||+||++|+.++..
T Consensus 75 ~~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk-~LGvtaI~L~Pi~~~~~------ 147 (572)
T d1gjwa2 75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVK-SLGADAIYLLPVSRMSD------ 147 (572)
T ss_dssp CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHH-HHTCCEEEECCCEEECC------
T ss_pred CCCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhhHHHH-HcCCCEEEeCCcccCcc------
Confidence 3457999999999999999999988765 89999999999999 99999777777665322
Q ss_pred ccCccccccccccCccceeecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCccccccccccc
Q psy15051 88 MNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFST 166 (1065)
Q Consensus 88 ~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~ 166 (1065)
....+..+|||+ ++||+.+++.+ ..++++.|||++||++||+ +|++||+|| +||
T Consensus 148 ----~~~~~~~~~GY~--~~dy~~~dp~~-----~~~~~~~~Gt~~dfk~lV~~~H~~GI~VI--------lDv------ 202 (572)
T d1gjwa2 148 ----LFKKGDAPSPYS--VKNPMELDERY-----HDPLLEPFKVDEEFKAFVEACHILGIRVI--------LDF------ 202 (572)
T ss_dssp ----SSCSSSSCCTTS--EEEEEEECGGG-----SCGGGTTSCHHHHHHHHHHHHHHTTCEEE--------EEE------
T ss_pred ----ccCCCCCCCCCC--ccCCCCCCccc-----ccccccCCCCHHHHHHHHHHHHhcCcEEE--------EEe------
Confidence 223455678886 99999999642 2688899999999999997 699999999 998
Q ss_pred CCCCCccccccCcccccCccccccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccccc
Q psy15051 167 KPPSHSMCLTDSKHQCQGQNFLFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKYWGD 246 (1065)
Q Consensus 167 ~v~nH~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1065)
|+|||+ .+|+||++.+. |+.+...+-.++.+.+..+ . .... +.+
T Consensus 203 -V~NHts----------~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~------------~-------~~~~--~~~ 246 (572)
T d1gjwa2 203 -IPRTAA----------RDSDLIREHPD----WFYWIKVEELADYTPPRAE------------E-------LPFK--VPD 246 (572)
T ss_dssp -CTTEEE----------TTCGGGTTCGG----GSCCEEGGGSTTCCCCCCT------------T-------SCSB--CCC
T ss_pred -eecccc----------cCCHHHHhCcc----ccccccccccccCCCCCCC------------C-------Cccc--CCC
Confidence 999986 78899987543 2222222111111100000 0 0000 000
Q ss_pred cccccCCcchhhhccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCcc
Q psy15051 247 ILERTVSSNSLQALQRVYPPPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQT 326 (1065)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~ 326 (1065)
. ..+.... ....+++.+. ..++++|+.||.|+
T Consensus 247 ~------~~~~~~~--------~~~~~~~~~~-------------------~~~~~~~~~~~~~~--------------- 278 (572)
T d1gjwa2 247 E------DELEIIY--------NKENVKRHLK-------------------KFTLPPNLIDPQKW--------------- 278 (572)
T ss_dssp H------HHHHHHH--------TSHHHHHHHT-------------------TBCCCHHHHCHHHH---------------
T ss_pred C------ccccccc--------CCceeeeecc-------------------ccCCCccccCHHHH---------------
Confidence 0 0000000 0111134455 68999999999996
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCccccccCC
Q psy15051 327 TVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYEHE 368 (1065)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~~~ 368 (1065)
..+.+++.+|++.||||||+|++..+.+..
T Consensus 279 ------------~~~~~~~~~~~~~~vdgfr~d~~~~~~~~~ 308 (572)
T d1gjwa2 279 ------------EKIKREEGNILELIVKEFGIITPPGFSDLI 308 (572)
T ss_dssp ------------HHHHTCSSCHHHHHHHHHSEECCCBCCSSB
T ss_pred ------------HHHHHHhhhHHhcccceeeccccccccccc
Confidence 789999999999999999999999987743
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.95 E-value=4.2e-29 Score=298.42 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=48.2
Q ss_pred chhhhcccceEEEecccccCcCCCCcccccc-----------hhhhhhhhHhhhCCCCcCCCCCCC
Q psy15051 24 QKEWWKNTVIYQILVPSFKDSNNDGIGDLRG-----------KNVRKRYLELTLGLDPCGSSMNTD 78 (1065)
Q Consensus 24 ~~~w~~~~viYqi~~~~F~d~~~~g~Gdl~g-----------i~~kL~yl~~~LGv~~~~~~p~~~ 78 (1065)
++.||+++||||||||||+|+|++|+||++| ||+|||||+ +||||+||++|..+
T Consensus 15 ~~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~-~LGVtaiwL~Pi~~ 79 (563)
T d2fhfa5 15 TKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLS-ASGVTHIELLPVFD 79 (563)
T ss_dssp SHHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHH-HHTCCEEEESCCEE
T ss_pred CCCCHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHH-HcCCCEEEeCCccc
Confidence 4679999999999999999999999988888 999999999 99999666666543
|
| >d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=9.2e-30 Score=288.09 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=69.2
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
++.||||.+- ++|+||++|||||| +||||+||++|+.++....- ..-.....+|||. +.|
T Consensus 4 ~~~~i~~~f~-----------~~f~~i~~~ldyl~-~lGv~aIwl~Pi~~~~~~~~------~~~~~~~~y~gY~--~~d 63 (344)
T d1ua7a2 4 KSGTILHAWN-----------WSFNTLKHNMKDIH-DAGYTAIQTSPINQVKEGNQ------GDKSMSNWYWLYQ--PTS 63 (344)
T ss_dssp TTSCEEECTT-----------BCHHHHHHTHHHHH-HTTCSEEEECCCEEECCTGG------GCCBGGGGGGGGC--EEE
T ss_pred CCCeEEEecC-----------CcHHHHHHhHHHHH-HcCCCEEEeCCCeeCCCcCC------CCCCCCCCccccc--ccc
Confidence 3568888865 56889999999999 99999777777665432100 0001122367772 444
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
| ++|||+|||++||++||+ ||++||||| +|+ |+||++
T Consensus 64 y-------------~~vd~~~Gt~~df~~LV~~aH~~Gi~Vi--------lD~-------V~NH~~ 101 (344)
T d1ua7a2 64 Y-------------QIGNRYLGTEQEFKEMCAAAEEYGIKVI--------VDA-------VINHTT 101 (344)
T ss_dssp E-------------EEEETTTEEHHHHHHHHHHHHTTTCEEE--------EEE-------CCSBCC
T ss_pred C-------------CCCCCCCCCHHHHHHHHHHhcccceeEe--------ecc-------ceeeec
Confidence 4 555568999999999997 799999999 776 777754
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=99.95 E-value=4.6e-28 Score=278.46 Aligned_cols=102 Identities=10% Similarity=0.079 Sum_probs=79.5
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d 108 (1065)
+.||+|.|=. ++. ++.|+++||++|||||| +||||+||++ |++.+ +..++||. +.|
T Consensus 2 ~~~~~~~f~w---~~~-~~gg~~~gi~~kLdylk-~LGvtaI~L~----------------Pi~~~~~~~~~gy~--~~~ 58 (393)
T d1e43a2 2 NGTLMQYFEW---YTP-NDGQHWKRLQNDAEHLS-DIGITAVWIP----------------PAYKGLSQSDNGYG--PYD 58 (393)
T ss_dssp CCCEEECCCT---TCC-SSSCHHHHHHHHHHHHH-HHTCCEEEEC----------------CCSEESSTTCCSSS--EEE
T ss_pred CccEEEeEec---CCC-CCCCCHHHHHHHHHHHH-HcCCCEEEeC----------------cCccCCCCCCCCCC--ccc
Confidence 3577777631 222 22489999999999999 9999944444 55544 34578886 999
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++++.+|.. ...|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 59 ~Y~~~~~~~----~~~vd~~~Gt~~df~~Lv~~~H~~Gi~Vi--------lD~-------V~NH~~ 105 (393)
T d1e43a2 59 LYDLGEFQQ----KGTVRTKYGTKSELQDAIGSLHSRNVQVY--------GDV-------VLNHKA 105 (393)
T ss_dssp TTCSSCSCB----TTBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC
T ss_pred Ccccccccc----cCccCCCCCCHHHHHHHHHHHHHcCCEEE--------EEE-------eecccc
Confidence 999998621 1479999999999999998 699999999 998 999976
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=99.94 E-value=6.3e-28 Score=272.54 Aligned_cols=92 Identities=7% Similarity=-0.012 Sum_probs=67.7
Q ss_pred ccceEEEeccccc-CcCCCCc-ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceee
Q psy15051 30 NTVIYQILVPSFK-DSNNDGI-GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVV 107 (1065)
Q Consensus 30 ~~viYqi~~~~F~-d~~~~g~-Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~ 107 (1065)
+.|++| .|. ++..++. |+++||++|||||| +||||+||++|..++.... ........+|||
T Consensus 16 ~~~~~~----~f~w~~~~~~~~~~~~~i~~kl~yl~-~lGv~aIwl~P~~~~~~~~-------~~~~~~~~~hgY----- 78 (357)
T d1gcya2 16 DEIILQ----GFHWNVVREAPNDWYNILRQQAATIA-ADGFSAIWMPVPWRDFSSW-------SDGSKSGGGEGY----- 78 (357)
T ss_dssp CCCEEE----CCCTTHHHHSTTTHHHHHHHHHHHHH-HTTCSEEEECCCSCCCCCB-------C---CCBCCSST-----
T ss_pred CEEEEe----eeecCCCCCCCCcHHHHHHHHHHHHH-HcCCCEEEeCcCeeCCccC-------CCCCCCCCCCCc-----
Confidence 456766 564 4444444 45999999999999 9999988888887764321 011123357888
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEE
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLI 149 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi 149 (1065)
++.+| +|||+|||++||++||+ ||++||+||
T Consensus 79 ---~~~dy--------~vd~~~Gt~~df~~LV~~aH~~GI~VI 110 (357)
T d1gcya2 79 ---FWHDF--------NKNGRYGSDAQLRQAASALGGAGVKVL 110 (357)
T ss_dssp ---TCSSS--------CSCSSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred ---Chhhc--------ccCccCCCHHHHHHHHHHHHhcCCeEE
Confidence 66664 47789999999999997 699999999
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=6.6e-27 Score=268.47 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=87.3
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d 108 (1065)
+.||.|.|=-. + +++.|.+++|++|||||| +|||| ++|++ |++++ +..++||+ +.|
T Consensus 5 ~~~~~~~f~w~---~-~~~~~~~~~i~~kLdyLk-~LGv~---------------aI~L~-Pi~~~~~~~~~GY~--~~d 61 (393)
T d1hvxa2 5 NGTMMQYFEWY---L-PDDGTLWTKVANEANNLS-SLGIT---------------ALWLP-PAYKGTSRSDVGYG--VYD 61 (393)
T ss_dssp CCCEEECCCTT---C-CSSSCHHHHHHHHHHHHH-HTTCC---------------EEEEC-CCSEESSTTCCSSS--EEE
T ss_pred CceEEEeEeec---c-CCCCChHHHHHHHHHHHH-HcCCC---------------EEEEC-CCCcCCCCCCCCCC--ccC
Confidence 46777776321 1 223478999999999999 99999 44444 66654 33578886 999
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
|+++.+++. ...|||+|||++||++||+ ||++||+|| +|| |+||++ ...+|+
T Consensus 62 ~y~~~~~~~----~~~vd~~~Gt~~df~~LV~~aH~~GIkVI--------lDv-------V~NHt~--------~~~~~~ 114 (393)
T d1hvxa2 62 LYDLGEFNQ----KGAVRTKYGTKAQYLQAIQAAHAAGMQVY--------ADV-------VFDHKG--------GADGTE 114 (393)
T ss_dssp TTCSSCSCB----TTBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC--------CCSEEE
T ss_pred ccccccccc----cCCcCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc--------ccCCcc
Confidence 999998732 2579999999999999997 799999999 998 999985 235678
Q ss_pred cccCC
Q psy15051 188 LFQGR 192 (1065)
Q Consensus 188 ~f~~~ 192 (1065)
||...
T Consensus 115 w~~~~ 119 (393)
T d1hvxa2 115 WVDAV 119 (393)
T ss_dssp EEEEE
T ss_pred ceeec
Confidence 88654
|
| >d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Sucrose phosphorylase species: Bifidobacterium adolescentis [TaxId: 1680]
Probab=99.94 E-value=6e-28 Score=274.51 Aligned_cols=221 Identities=13% Similarity=0.010 Sum_probs=148.5
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc-ccccccCccceee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT-TAVKTWSRRWIVV 107 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~-~~~~~~gy~~~v~ 107 (1065)
++.|.|++|++||. .|||+||++|||||| +|||| ++|++ |++. ++..+|||
T Consensus 2 ~~~~~~~~y~d~~~------~Gdl~g~~~~Ldyl~-~LGv~---------------~I~L~-Pi~~~~~~~d~GY----- 53 (434)
T d1r7aa2 2 KNKVQLITYADRLG------DGTIKSMTDILRTRF-DGVYD---------------GVHIL-PFFTPFDGADAGF----- 53 (434)
T ss_dssp CSSCEEEECSSSBS------SSSHHHHHHHHHHHS-TTTCC---------------EEEEC-CCEECSSSSSTTS-----
T ss_pred CCceEEEEecCCCC------CCCHHHHHHHHHHHH-HcCCC---------------EEEEC-CCCCCCCCCCCCc-----
Confidence 67899999988873 499999999999999 99999 55555 7775 45678999
Q ss_pred cccccCCCccccccccccccccCcHHHHHHHHHHHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccc
Q psy15051 108 NHEQISRLPTRTVSSLNIICKYFYMKKFKHRIDAKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNF 187 (1065)
Q Consensus 108 d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~ 187 (1065)
++.+| ++|||+|||++|||+|++ ||||| +|| |+|||+ .+|+
T Consensus 54 ---~~~Dy-------~~vdp~~Gt~~d~k~L~r----Gi~VI--------lDv-------V~NHt~----------~~~~ 94 (434)
T d1r7aa2 54 ---DPIDH-------TKVDERLGSWDDVAELSK----THNIM--------VDA-------IVNHMS----------WESK 94 (434)
T ss_dssp ---SCSEE-------EEECTTTCCHHHHHHHHT----TSEEE--------EEE-------ECSEEE----------TTSH
T ss_pred ---Ccccc-------cccCcccCCHHHHHHHHh----CCeee--------EEe-------cccccc----------cccc
Confidence 66666 677779999999999965 99999 998 999976 7888
Q ss_pred cccCCCcceeccccCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc--ccccccccCCcchhhhccccCC
Q psy15051 188 LFQGRPVNLMSYVLGRELRKHPPHSTPHLPHVCCPSGLPSTSRPDIEGEGPSSEKY--WGDILERTVSSNSLQALQRVYP 265 (1065)
Q Consensus 188 ~f~~~~~~~~~~~~~~~~d~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 265 (1065)
||+.......... ...|+.... ...+..... +........... ...+.
T Consensus 95 ~~~~~~~~~~~~~--------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 144 (434)
T d1r7aa2 95 QFQDVLAKGEESE--------------YYPMFLTMS-----------SVFPNGATEEDLAGIYRPRPGLP-----FTHYK 144 (434)
T ss_dssp HHHHHHHHGGGST--------------TGGGBCBHH-----------HHCTTCBCHHHHHTSCCSSSSCS-----EEEEE
T ss_pred hhhhhhhccCCCc--------------ccccccccC-----------CCCCCccccCCCCcccccCCccc-----ccccc
Confidence 8876422211100 000000000 000000000 000000000000 00000
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHH
Q psy15051 266 PPHHSMTLPHQYSMSMPPRHSMTLPSPPDYPRVHQPHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCIL 345 (1065)
Q Consensus 266 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~q~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (1065)
.....+++++.|. ..+|+||+.||+|+ +++.+++
T Consensus 145 ~~~~~~~~~~~~~-------------------~~~~~ln~~~p~v~---------------------------~~~~~~~ 178 (434)
T d1r7aa2 145 FAGKTRLVWVSFT-------------------PQQVDIDTDSDKGW---------------------------EYLMSIF 178 (434)
T ss_dssp ETTEEEEEECSSS-------------------TTEEEBCTTSHHHH---------------------------HHHHHHH
T ss_pred cccccceeeeccc-------------------cccchhcccchhhh---------------------------hhhhhHh
Confidence 0112233478887 79999999999997 7899999
Q ss_pred HHHHHcCCCeeeecCccccccCCCCCCCCCCCcCCCCCCCCCCCccccccCCchhHHHHHHHHHHHHHhh
Q psy15051 346 EFWLKRGVDGFGMDSVLKLYEHESFANEPRLPEAAGRPDSDPTAYDHIYTIDQPETYEMLYKWRTLVEKF 415 (1065)
Q Consensus 346 ~~Wl~~GvDGfRlDav~~l~~~~~~~d~p~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~r~~~d~~ 415 (1065)
+||+++||||||+|+++++.++... .+...++.++++++++......
T Consensus 179 ~~w~~~g~dg~r~d~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 225 (434)
T d1r7aa2 179 DQMAASHVSYIRLDAVGYGAKEAGT-----------------------SCFMTPKTFKLISRLREEGVKR 225 (434)
T ss_dssp HHHHHTTCCEEEEETGGGSCCCTTS-----------------------CSSSCHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCCccccccccccccccccc-----------------------ccccccchhhHHHHHHHHHhcc
Confidence 9999999999999999999986532 1456678899999998876655
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=99.94 E-value=1.9e-27 Score=272.93 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=80.7
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d 108 (1065)
+.||||.|- | ++..+| |.++||++|||||| +|||| ++|++ |++++ +..++||. +.|
T Consensus 2 ~~~~~q~f~--w-~~~~~g-~~~~~i~~kLdyL~-~LGv~---------------aIwL~-Pi~~~~~~~~~gY~--~~~ 58 (394)
T d2d3na2 2 NGTMMQYFE--W-YLPNDG-NHWNRLNSDASNLK-SKGIT---------------AVWIP-PAWKGASQNDVGYG--AYD 58 (394)
T ss_dssp CCCEEECCC--T-TCCSSS-CHHHHHHHHHHHHH-HHTCC---------------EEEEC-CCSEESSTTCCSCS--EEE
T ss_pred CccEEEEEe--c-ccCCCC-CcHHHHHHHHHHHH-HcCCC---------------EEEEC-cCccCCCCCCCCCC--ccc
Confidence 578999962 1 233333 78999999999999 99999 44444 55554 44578886 889
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++++.+|.+ ..+|||+|||++||++||+ ||++||||| +|| |+||++
T Consensus 59 ~yd~~~~~~----~~~vd~~~Gt~~df~~Lv~~aH~~GIkVi--------lDv-------V~NH~~ 105 (394)
T d2d3na2 59 LYDLGEFNQ----KGTVRTKYGTRSQLQAAVTSLKNNGIQVY--------GDV-------VMNHKG 105 (394)
T ss_dssp TTCSSCSCB----TTBSSBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC
T ss_pred Ccccccccc----cCCcCCCCCCHHHHHHHHHHHHHCCCEEE--------EEE-------eccccc
Confidence 998887621 1579999999999999997 799999999 998 999986
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=99.93 E-value=1.2e-26 Score=263.63 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=81.5
Q ss_pred cccceEEEecccccCcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc--ccccccCcccee
Q psy15051 29 KNTVIYQILVPSFKDSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT--TAVKTWSRRWIV 106 (1065)
Q Consensus 29 ~~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~--~~~~~~gy~~~v 106 (1065)
++.||+|-|-- ++. .|.|.++||++|||||| +||||+||++ |+++ ++..+|||+ +
T Consensus 8 ~~~~~~q~f~w---~~~-~~~~~~~gi~~kLdylk-~LGv~~Iwl~----------------Pv~~~~~~~~~~gY~--~ 64 (361)
T d1mxga2 8 EGGVIMQAFYW---DVP-GGGIWWDHIRSKIPEWY-EAGISAIWLP----------------PPSKGMSGGYSMGYD--P 64 (361)
T ss_dssp GTCCEEECCCT---TCC-CSSCHHHHHHHHHHHHH-HHTCCEEECC----------------CCSEETTGGGCCSSS--E
T ss_pred cCCEEEEeeec---CCC-CCCchHHHHHHHHHHHH-hcCCCEEEeC----------------cCeeCCCCCCCCCCC--c
Confidence 57899988652 222 23467899999999999 9999944444 5554 234568886 9
Q ss_pred ecccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 107 VNHEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 107 ~d~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
.||+++.++++. ..|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 65 ~dy~~~~~~~~~----~~vd~~~Gt~~d~~~LV~~aH~~GikVI--------lD~-------V~NH~~ 113 (361)
T d1mxga2 65 YDYFDLGEYYQK----GTVETRFGSKEELVRLIQTAHAYGIKVI--------ADV-------VINHRA 113 (361)
T ss_dssp EETTCSSCSCBT----TBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred ccccccCccccc----cCCCCCCCCHHHHHHHHHHHHHCCCEEE--------EEe-------eecccc
Confidence 999999987432 689999999999999997 799999999 888 999975
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=99.91 E-value=8.5e-25 Score=249.52 Aligned_cols=90 Identities=11% Similarity=-0.015 Sum_probs=70.2
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhhh-hhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRKR-YLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL~-yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
+.||+|.|--+ +++|+++|+ ||+ +||||+||++|+.++.. -.+...++||
T Consensus 10 ~~~i~~~f~W~-----------~~~i~~~~~~yl~-~lG~tai~l~P~~e~~~-----------~~~~~~~~~Y------ 60 (378)
T d1jaea2 10 RNSIVHLFEWK-----------WNDIADECERFLQ-PQGFGGVQISPPNEYLV-----------ADGRPWWERY------ 60 (378)
T ss_dssp CEEEEEETTCC-----------HHHHHHHHHHTTT-TTTEEEEECCCCSCBBC-----------CTTCCGGGGG------
T ss_pred CceEEEeccCc-----------HHHHHHHHHHHHH-HhCCCEEEeCcccccCC-----------CCCCCCcccc------
Confidence 45888887654 679999997 999 99999888888777432 1111224556
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+| +|||+|||++||++||+ ||++||+|| +|+ |+||++
T Consensus 61 --~~~dY--------~id~~~Gt~~df~~LV~~aH~~GI~Vi--------lDv-------V~NH~~ 101 (378)
T d1jaea2 61 --QPVSY--------IINTRSGDESAFTDMTRRCNDAGVRIY--------VDA-------VINHMT 101 (378)
T ss_dssp --SBCCS--------CSEETTEEHHHHHHHHHHHHHTTCEEE--------EEE-------CCSBCC
T ss_pred --CCccc--------eeCCCCCCHHHHHHHHHHHHhcCceee--------eee-------cccccc
Confidence 66663 68889999999999997 799999999 888 888876
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.90 E-value=1.7e-24 Score=248.94 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=70.5
Q ss_pred ccceEEEecccccCcCCCCcccccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeec
Q psy15051 30 NTVIYQILVPSFKDSNNDGIGDLRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVN 108 (1065)
Q Consensus 30 ~~viYqi~~~~F~d~~~~g~Gdl~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d 108 (1065)
..||+|.|-.+ +++|+++| +||+ +||||+||++|+.++... .......++||
T Consensus 10 ~~~i~~~f~w~-----------~~~i~~e~~~yL~-~lG~taIwl~P~~e~~~~---------~~~~~~~y~gY------ 62 (403)
T d1hx0a2 10 RTSIVHLFEWR-----------WVDIALECERYLG-PKGFGGVQVSPPNENIVV---------TNPSRPWWERY------ 62 (403)
T ss_dssp CCEEEEETTCC-----------HHHHHHHHHHTTT-TTTCCEEEECCCSCBBCC---------TTTTSCGGGGG------
T ss_pred CeeEEEeecCc-----------HHHHHHHHHHHHH-HhCCCEEEeCcCccCccC---------CCCCCCCceee------
Confidence 37899998875 55788876 8999 999998888888774321 11111124677
Q ss_pred ccccCCCccccccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 109 HEQISRLPTRTVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 109 ~~~v~~~~~~~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
++.+ ++|+|+|||++||++||+ ||++||+|| +|| |+||++
T Consensus 63 --~~~d--------Y~v~~~~Gt~~dfk~Lv~~aH~~GI~VI--------lDv-------V~NH~~ 103 (403)
T d1hx0a2 63 --QPVS--------YKLCTRSGNENEFRDMVTRCNNVGVRIY--------VDA-------VINHMC 103 (403)
T ss_dssp --SBSC--------SCSCBTTBCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE
T ss_pred --cCCC--------CccCCCCCCHHHHHHHHHHHHhcCCEEE--------EEE-------eccccc
Confidence 5555 357789999999999997 799999999 898 999986
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=99.88 E-value=1.4e-23 Score=237.07 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=60.5
Q ss_pred ccchhhhh-hhhHhhhCCCCcCCCCCCCCCcceeeecccCccccccccccCccceeecccccCCCccccccccccccccC
Q psy15051 52 LRGKNVRK-RYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTTAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICKYF 130 (1065)
Q Consensus 52 l~gi~~kL-~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~~G 130 (1065)
+++|++++ +||| +||||+||++|+.++... ..-+||| ++.+| +|||+||
T Consensus 13 ~~~i~~~~~dyl~-~lG~tai~l~P~~~~~~~-------------~~~y~gY--------~~~dy--------~vd~~~G 62 (354)
T d1g94a2 13 WQDVAQECEQYLG-PKGYAAVQVSPPNEHITG-------------SQWWTRY--------QPVSY--------ELQSRGG 62 (354)
T ss_dssp HHHHHHHHHHTHH-HHTCCEEEECCCSCBBCS-------------SSGGGGG--------SBSCS--------CSCBTTB
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeCcCccCCCC-------------CCCcccC--------CCCcc--------eeCCCCC
Confidence 67898887 7999 999997777776663220 1124688 55553 5778999
Q ss_pred cHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 131 YMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 131 t~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|++||++||+ ||++||+|| +|| |+||++
T Consensus 63 t~~dfk~LV~~aH~~GI~Vi--------lDv-------V~NH~~ 91 (354)
T d1g94a2 63 NRAQFIDMVNRCSAAGVDIY--------VDT-------LINHMA 91 (354)
T ss_dssp CHHHHHHHHHHHHHTTCEEE--------EEE-------ECSEEC
T ss_pred CHHHHHHHHHHHhccCceeE--------EEe-------eccccc
Confidence 9999999998 699999999 888 899975
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=99.87 E-value=2.7e-23 Score=234.25 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=80.4
Q ss_pred cc-CcCCCCcccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCccccc-cccccCccceeecccccCCCccc
Q psy15051 41 FK-DSNNDGIGDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILTT-AVKTWSRRWIVVNHEQISRLPTR 118 (1065)
Q Consensus 41 F~-d~~~~g~Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~~-~~~~~gy~~~v~d~~~v~~~~~~ 118 (1065)
|. +.+++| |++++|++|||||| +||||+||++ |++++ +..+|||. +.||+++.+++
T Consensus 11 ~~~~~~~~~-~~~~~i~~kLdyLk-~LGvt~I~l~----------------Pi~~~~~~~~~gY~--~~d~~~~~~~~-- 68 (390)
T d1ud2a2 11 YEWHLENDG-QHWNRLHDDAAALS-DAGITAIWIP----------------PAYKGNSQADVGYG--AYDLYDLGEFN-- 68 (390)
T ss_dssp CCTTCCCSS-CHHHHHHHHHHHHH-HHTCCEEEEC----------------CCSEESSTTCCSSS--EEETTCSSCSC--
T ss_pred eccCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEeC----------------CCccCCCCCCCCCC--ccCCccccccc--
Confidence 54 445554 89999999999999 9999955444 55443 23578875 99999887542
Q ss_pred cccccccccccCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCccccccCcccccCccccccC
Q psy15051 119 TVSSLNIICKYFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSMCLTDSKHQCQGQNFLFQG 191 (1065)
Q Consensus 119 ~~~~~~i~~~~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~~~~~~~~~~~~~~~~f~~ 191 (1065)
..++|||+|||++|||+||+ ||++||+|| +|+ |+|||+ ..|+|+..
T Consensus 69 --~~~~vd~~~Gt~~efk~lV~~~H~~GI~Vi--------lDv-------V~NHt~----------~~~~~~~~ 115 (390)
T d1ud2a2 69 --QKGTVRTKYGTKAQLERAIGSLKSNDINVY--------GDV-------VMNHKM----------GADFTEAV 115 (390)
T ss_dssp --BTTBSSCSSCCHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEC----------CCSEEEEE
T ss_pred --ccCCcCCCCCCHHHHHHHHHHHHhcCCceE--------EEE-------cccccc----------Ccccchhh
Confidence 23689999999999999998 699999999 998 999987 56666643
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.80 E-value=1.3e-21 Score=234.39 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=64.0
Q ss_pred ccccchhhhhhhhHhhhCCCCcCCCCCCCCCcceeeecccCcccc-ccccccCccceeecccccCCCccccccccccccc
Q psy15051 50 GDLRGKNVRKRYLELTLGLDPCGSSMNTDSNTIYISFWMNCPILT-TAVKTWSRRWIVVNHEQISRLPTRTVSSLNIICK 128 (1065)
Q Consensus 50 Gdl~gi~~kL~yl~~~LGv~~~~~~p~~~~~~~~~~~~~~~p~~~-~~~~~~gy~~~v~d~~~v~~~~~~~~~~~~i~~~ 128 (1065)
|||+|++++||||| +|||+ ++|++ |+++ ++..+|||+ |+||+. |||+
T Consensus 14 ftF~~~~~~LpYL~-~LGVs---------------~IyLs-Pi~~a~~gS~HGYD--v~D~~~-------------Vdp~ 61 (653)
T d1iv8a2 14 FNFGDVIDNLWYFK-DLGVS---------------HLYLS-PVLMASPGSNHGYD--VIDHSR-------------INDE 61 (653)
T ss_dssp BCHHHHHHTHHHHH-HHTCC---------------EEEEC-CCEEECTTCSSCCS--EEEEEE-------------ECTT
T ss_pred CCHHHHHHhhHHHH-HCCCC---------------EEEEC-ccCCCCCCCCCCcc--ccCccc-------------cchh
Confidence 79999999999999 99999 55555 6664 445789994 555555 5558
Q ss_pred cCcHHHHHHHHH-HHhCCCEEEeccCCCcccccccccccCCCCCcc
Q psy15051 129 YFYMKKFKHRID-AKNDSLHLIDSVLGVPTVDIESLFSTKPPSHSM 173 (1065)
Q Consensus 129 ~Gt~~df~~Li~-ah~~gi~vi~~~~~~~~~D~~~~~~~~v~nH~~ 173 (1065)
|||++||++||+ +|++||+|| +|| |+||++
T Consensus 62 lGt~edf~~LV~aaH~~Gm~VI--------lDi-------VpNH~g 92 (653)
T d1iv8a2 62 LGGEKEYRRLIETAHTIGLGII--------QDI-------VPNHMA 92 (653)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEE--------EEE-------CCSEEE
T ss_pred cCCHHHHHHHHHHHHHCCCEEE--------EEE-------CCCccc
Confidence 999999999998 699999999 998 999976
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=99.74 E-value=3e-19 Score=213.69 Aligned_cols=97 Identities=26% Similarity=0.604 Sum_probs=82.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccccccccccccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQTKNRSHQLYC 676 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~~~~~~~~~~ 676 (1065)
|++++|||||+|||++|||+||+++. ..+|||++.||+.|||+|||++||++||++|
T Consensus 18 ~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aa---------------------- 75 (653)
T d1iv8a2 18 DVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETA---------------------- 75 (653)
T ss_dssp HHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHH----------------------
T ss_pred HHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHH----------------------
Confidence 99999999999999999999999864 4579999999999999999999999999999
Q ss_pred chhhhhhccccccccccccCccccCCCCCCCccCcccchhhhhhhcCcEEEEEeccCCCCCCchhh--Hhhhc--cCCCC
Q psy15051 677 HMYMYAICADKFAIHSVYLNPVYAGSGNQNWRAGNQNRAESMEHRAGMKILVEFVPNHSSNKHDWF--IKSAQ--KIDPY 752 (1065)
Q Consensus 677 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gi~vIlDvV~NHts~~~~wf--~~~~~--~~~~~ 752 (1065)
|++||+||+|+|+||+|.++.++ .+... ..++|
T Consensus 76 -------------------------------------------H~~Gm~VIlDiVpNH~g~d~~~~~~~Dvl~~G~~S~y 112 (653)
T d1iv8a2 76 -------------------------------------------HTIGLGIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKY 112 (653)
T ss_dssp -------------------------------------------HHTTCEEEEEECCSEEECCTTCHHHHHHHHHGGGSTT
T ss_pred -------------------------------------------HHCCCEEEEEECCCcccCCcccHHHHHhhhcCCCCCC
Confidence 88888999999999998777654 23222 25667
Q ss_pred Ccceeec
Q psy15051 753 TNYYVWK 759 (1065)
Q Consensus 753 ~d~y~~~ 759 (1065)
.+||.+.
T Consensus 113 ~~~fdi~ 119 (653)
T d1iv8a2 113 YTYFDFF 119 (653)
T ss_dssp GGGBCBC
T ss_pred ccccccc
Confidence 7777554
|
| >d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Oligo-1,6-glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=97.62 E-value=0.00012 Score=62.36 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=44.6
Q ss_pred CCeEEEcc-CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1000 GDYKISTP-NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1000 G~~~~l~~-~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
|+|+.+.. +++|+||.|..+++++|||+|+|+++++++++.... ...++++++.
T Consensus 1 G~~~~l~~~~~~V~aY~R~~~~~~~lVv~NfS~~~~~~~lp~~~~-~~~~~~l~~n 55 (79)
T d1uoka1 1 GSYDLILENNPSIFAYVRTYGVEKLLVIANFTAEECIFELPEDIS-YSEVELLIHN 55 (79)
T ss_dssp CEEEEESTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTTCC-CSCEEEEEES
T ss_pred CCeEEccCCCCcEEEEEEECCCcEEEEEEeCCCCCEEEECCcccc-cCcceEEEeC
Confidence 78888876 458999999999999999999999999999986433 2456777765
|
| >d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=97.51 E-value=3.1e-05 Score=67.03 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCeEEEccC--CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCCCC
Q psy15051 1000 GDYKISTPN--NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASG 1062 (1065)
Q Consensus 1000 G~~~~l~~~--~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~~g 1062 (1065)
|+|+.+..+ .+||||.|..++++++|++|+++++++++++........++.++++.......|
T Consensus 1 G~~~~l~ad~~~~v~af~R~~~~e~vlVv~N~s~~~~~v~lp~~~~~~~~~~dllsg~~~~~~~g 65 (83)
T d1wzla2 1 GNVRSWHADKQANLYAFVRTVQDQHVGVVLNNRGEKQTVLLQVPESGGKTWLDCLTGEEVHGKQG 65 (83)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTEEEEEEEECSSSCEEEEEECCGGGCSEEEETTTCCEEECBTT
T ss_pred CceEEEEECCCCCEEEEEEECCCCEEEEEEECCCccEEEEEcCccccceeeEEccCCcEEEecCC
Confidence 677877764 579999999999999999999999999998753333334455555544444444
|
| >d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=97.47 E-value=0.0002 Score=60.85 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCeEEEccC-CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1000 GDYKISTPN-NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1000 G~~~~l~~~-~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
|+++.+..+ ++|+||.|+.++++++||+|||+++++++++.. . ....+++++
T Consensus 1 G~y~~l~~~~~~v~aY~R~~~~~~~lVv~NfS~~~~~~~lp~~--~-~~~~~ll~n 53 (78)
T d1m53a1 1 GAYQDLNPQDNTVYAYTRTLGNERYLVVVNFKEYPVRYTLPAN--D-AIEEVVIDT 53 (78)
T ss_dssp SEEEESCTTCSSEEEEEEEETTEEEEEEEECSSSCEEEECCTT--C-CEEEEEEES
T ss_pred CceEEccCCCCcEEEEEEEcCCeEEEEEEeCCCCCEEEECCcc--c-cccEEEEEC
Confidence 678888764 589999999999999999999999999999863 2 233455554
|
| >d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Neopullulanase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.38 E-value=0.00013 Score=62.74 Aligned_cols=41 Identities=20% Similarity=0.419 Sum_probs=37.1
Q ss_pred CCeEEEccCC--cEEEEEEEcCCcEEEEEEECCCCcEEEEcCC
Q psy15051 1000 GDYKISTPNN--YVFILTRTEGSTSVYLIINLNSRTETVDLSD 1040 (1065)
Q Consensus 1000 G~~~~l~~~~--~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~ 1040 (1065)
|+++++..++ +|+||.|..+++++|||+|+|+++++++++.
T Consensus 1 G~~~~l~~~d~~~v~ay~R~~~~~~vLVv~N~S~~~~~v~lp~ 43 (83)
T d1j0ha2 1 GEISFLHADDEMNYLIYKKTDGDETVLVIINRSDQKADIPIPL 43 (83)
T ss_dssp CEEEEECCSCTTTEEEEEEECSSCEEEEEEECSSSCEEEECCC
T ss_pred CceEEEecCCCCCEEEEEEECCCCEEEEEEeCCCCCEEEEccC
Confidence 7788888643 6999999999999999999999999999986
|
| >d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=97.21 E-value=0.00016 Score=61.83 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=44.1
Q ss_pred eEEEcc--CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCCCCC
Q psy15051 1002 YKISTP--NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLASGK 1063 (1065)
Q Consensus 1002 ~~~l~~--~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~~g~ 1063 (1065)
|+++.. +.+++||.|+.+++++|||+|+++++++++++. ..+.++.++++.......|+
T Consensus 2 f~~L~a~~d~~v~ay~R~~~~e~vlVv~N~S~~~~tv~lp~---~~~~~~~l~~g~~~~~~~~~ 62 (80)
T d1ea9c2 2 FKFLTAEKNSRQIAYLREDDQDTILVVMNNDKAGHTLTLPV---RHAQWTHLWQDDVLTAAHGQ 62 (80)
T ss_dssp CCCSBCCSSCCEEEEEEECSSCEEEEEEECSSSCEEEEEEC---CSSSCCEEBSTTCCEECCCS
T ss_pred eEEEecCCCCCEEEEEEecCCCEEEEEEECCCCCEEEEecC---CCCeEEEeecCceeeccCCc
Confidence 344444 347999999999999999999999999999984 24567777766555444443
|
| >d1ji1a2 b.71.1.1 (A:555-637) Maltogenic amylase {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Maltogenic amylase species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]
Probab=96.79 E-value=0.00057 Score=58.69 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=44.3
Q ss_pred eEEEccC--CcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCc-cC--CCcEEEEEccCCCcCCCCC
Q psy15051 1002 YKISTPN--NYVFILTRTEGSTSVYLIINLNSRTETVDLSDCI-EN--GGDVAIFTSSVNSGLASGK 1063 (1065)
Q Consensus 1002 ~~~l~~~--~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~-~~--~~~~~v~~~s~~~~~~~g~ 1063 (1065)
|+.+..+ +++|||.|..++++++|++|+++++++++|+... .+ ...++.++++....+..|+
T Consensus 2 f~~l~ad~~~~v~ay~R~~~~e~vlV~~N~s~~~~~v~l~~~~~~~~~~~~~~dll~g~~~~v~~G~ 68 (83)
T d1ji1a2 2 FMTLITDDTNKIYSYGRFDNVNRIAVVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTVQNGM 68 (83)
T ss_dssp EEEEEEETTTTEEEEEEECSSCEEEEEEECSSSCEEEEECGGGGTCCTTCEEEETTTCCEEECBTTB
T ss_pred cEEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEEEecccccccccCcEEEEccCCCEEEEECCE
Confidence 5556553 4799999999999999999999999999987532 22 2345555555554455554
|
| >d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: 1,4-alpha-glucan branching enzyme species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0083 Score=53.66 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=45.1
Q ss_pred eEEEcc---CCcEEEEEEEcC-CcEEEEEEECCCCcEE-EEcCCCccCCCcEEEEEccCCCcCC-CCCC
Q psy15051 1002 YKISTP---NNYVFILTRTEG-STSVYLIINLNSRTET-VDLSDCIENGGDVAIFTSSVNSGLA-SGKL 1064 (1065)
Q Consensus 1002 ~~~l~~---~~~viaf~R~~~-~~~vlVv~N~s~~~~~-v~l~~~~~~~~~~~v~~~s~~~~~~-~g~~ 1064 (1065)
|+++.. +++|++|.|+.+ ++.+|||+||++..+. ..+. ..-+|.++++++|+...++ +|..
T Consensus 4 F~Wi~~~d~~~sV~af~R~~~~~~~~vvV~Nfsp~~~~~Y~ig--vp~~G~~~~ilNTD~~~ygGsg~~ 70 (106)
T d1m7xa2 4 FEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFG--INQPGKWREILNTDSMHYHGSNAG 70 (106)
T ss_dssp EEEEEEEETTTTEEEEEEECTTCCEEEEEEECSSCCEEEECCB--CSSCSEEEEEEETTSTGGGCCCCS
T ss_pred CEEeeCCCCCCCEEEEEEeCCCCCEEEEEEeCCCCccCcEEcC--CCCCCeEEEEEcCCccccCCcCcC
Confidence 667753 567999999963 4679999999997654 3332 2346999999999988885 4443
|
| >d1g5aa1 b.71.1.1 (A:555-628) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=94.81 E-value=0.011 Score=49.14 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=33.5
Q ss_pred CCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEcc
Q psy15051 1008 NNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSS 1054 (1065)
Q Consensus 1008 ~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s 1054 (1065)
++.|+||.| +++++||+|+|+++|.++++.....+..+..++++
T Consensus 9 N~~vlaf~R---~~~ilvi~NfS~~~Q~v~l~~l~~~g~~~~DLlsg 52 (74)
T d1g5aa1 9 NKHIIGYIR---NNALLAFGNFSEYPQTVTAHTLQAMPFKAHDLIGG 52 (74)
T ss_dssp CTTEEEEEE---TTTEEEEEECSSSCEEECTTTTTTSCSEEEETTTC
T ss_pred CCeEEEEEe---CCeEEEEEeCCCCCEEEEcchhhhcCCCcchhhCC
Confidence 568999999 46799999999999999998654444444444443
|
| >d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=94.30 E-value=0.046 Score=46.79 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCc-cCCC
Q psy15051 1000 GDYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCI-ENGG 1046 (1065)
Q Consensus 1000 G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~-~~~~ 1046 (1065)
|+++.++.++++++|.|..+++.+||++|.+...+. .++.+. .+|.
T Consensus 1 G~~~~~~in~DvyvyeR~~~~~~vlVAiNr~~~~~~-~i~~l~t~LP~ 47 (89)
T d3bmva3 1 GTTQQRWINNDVYIYERKFGNNVALVAINRNLSTSY-NITGLYTALPA 47 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCSSCCE-EECSCBCSSCS
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCCCCcE-EeeeeeccCCC
Confidence 677888899999999999999999999999975533 334332 3554
|
| >d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclomaltodextrinase species: Flavobacterium sp. 92 [TaxId: 197856]
Probab=93.67 E-value=0.043 Score=46.47 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=34.6
Q ss_pred EccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCcc
Q psy15051 1005 STPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIE 1043 (1065)
Q Consensus 1005 l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~ 1043 (1065)
..+.++||+|.|..+++.++|++|.+++++++++....+
T Consensus 5 f~P~~gvYvyfR~~~~~~VmVi~N~n~~~~~ldl~Rf~E 43 (83)
T d1h3ga2 5 FGPEENTWVYFRYNKDKRIMVAMNNNDKPMTLPTARFQE 43 (83)
T ss_dssp CCCBTTEEEEEEECSSEEEEEEEECSSSCEEEEGGGGHH
T ss_pred eccCCCEEEEEEEeCCCEEEEEECCCCccEEECHHHHHH
Confidence 345678999999999999999999999999999987653
|
| >d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus circulans, different strains [TaxId: 1397]
Probab=93.66 E-value=0.12 Score=44.17 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc-EEEEc
Q psy15051 1000 GDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT-ETVDL 1038 (1065)
Q Consensus 1000 G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~-~~v~l 1038 (1065)
|+++.++.++++++|+|..+++.+||++|.+... .+++.
T Consensus 1 G~~~~rw~~~DvyvyeR~~g~~~vlVAiNr~~~~~~~i~~ 40 (90)
T d1cxla3 1 GSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASISG 40 (90)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCSSCCEEECS
T ss_pred CccEEEEECCCEEEEEEEcCCCEEEEEEECCCCCCEEecc
Confidence 5678888999999999999999999999998543 44443
|
| >d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.57 E-value=0.13 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCeEEEccCCcEEEEEEEcCCcEEEEEEECCCCc
Q psy15051 1000 GDYKISTPNNYVFILTRTEGSTSVYLIINLNSRT 1033 (1065)
Q Consensus 1000 G~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~ 1033 (1065)
|+++.++.++++++|+|..+++.+||++|.+...
T Consensus 1 Gs~~~rwi~~DvyvyeR~fg~~~vlVAiNr~~~~ 34 (89)
T d1cyga3 1 GDTEQRWINGDVYVYERQFGKDVVLVAVNRSSSS 34 (89)
T ss_dssp CEEEEEEECSSEEEEEEEETTEEEEEEEECCSSC
T ss_pred CceeEEEECCCEEEEEEecCCcEEEEEEECCCCC
Confidence 6678888899999999999999999999998654
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=92.70 E-value=0.083 Score=56.57 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=47.5
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCC-----HHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGT-----MEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt-----~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.|+-||+||+|+|-+....+.. .++...+..+.+..|. .+.+.+++++|+++||+||+|+..
T Consensus 42 ~~~~~l~~~k~~G~N~iR~~~~~~~~----~~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~ 112 (410)
T d1uuqa_ 42 RLAKELDNLKAIGVNNLRVLAVSEKS----EINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 112 (410)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCBCC----CSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHCCCcEEEeCCccccc----ccccccCCCcccccccccHHHHHHHHHHHHHHHHcCCeeEEeccc
Confidence 56778999999999999874322221 1223334455566665 567889999999999999999764
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=91.03 E-value=0.1 Score=55.50 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=46.0
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCC-CCCCCCcCCCCcccCCCC---CCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGP-NGDIGYDISNHTEVGKDF---GTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~-~~~~GY~~~dy~~idp~~---Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-+.+.|+.||++|+|+|-| ||.-.. .....-.....+..++.+ ..++.++++|+.|+++||+||+|+-
T Consensus 45 ~~~~~~~~i~~~G~N~VRl-pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh 116 (358)
T d1ecea_ 45 DYRSMLDQIKSLGYNTIRL-PYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRH 116 (358)
T ss_dssp CHHHHHHHHHHTTCCEEEE-EEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEe-cCcHHHccCCCCCCCccccccChhhhchhHHHHHHHHHHHHHHCCCceeeecc
Confidence 5678899999999999999 442211 000000112223445544 3478999999999999999999964
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.94 E-value=0.035 Score=59.92 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCCCCCCcccccccccccCCCCCccccccchhhhHHHHHHHHHHHHHHHcCCCeeeecCcccccc
Q psy15051 301 PHCAVPNPKVLMVPNADIAWNPSCQTTVVDCQMFCYEITLLLCILEFWLKRGVDGFGMDSVLKLYE 366 (1065)
Q Consensus 301 ~dln~~np~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~GvDGfRlDav~~l~~ 366 (1065)
.-||+.||+++ +++.+.++.+.+.|||+|.+|...+...
T Consensus 119 ~~lD~~~p~~~---------------------------~~~~~~~~~~~~~Gvd~~K~D~~~~~~~ 157 (348)
T d1zy9a2 119 YALDLSKDEVL---------------------------NWLFDLFSSLRKMGYRYFKIDFLFAGAV 157 (348)
T ss_dssp EEBCTTCHHHH---------------------------HHHHHHHHHHHHTTCCEEEECCGGGGGC
T ss_pred eccCCCcHHHH---------------------------HHHHHHHHHHHhcCCCEEEeCCCCCccC
Confidence 34789999997 7788899998899999999998766543
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=90.65 E-value=0.076 Score=55.40 Aligned_cols=67 Identities=4% Similarity=-0.028 Sum_probs=41.9
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCC-CcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIG-YDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~G-Y~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-+.+.|++||++|+|+|-+ |++........ ........+++ ...+.++++|+.|.++||+||+|+..
T Consensus 43 ~~~~~l~~~~~~G~N~vRv-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~a~~~gi~vi~d~~~ 110 (350)
T d2c0ha1 43 TFESTLSDMQSHGGNSVRV-WLHIEGESTPEFDNNGYVTGIDN--TLISDMRAYLHAAQRHNILIFFTLWN 110 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEE-EEEETTSSSSEECTTSCEEECCT--THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-CcccCccCCcccccCCCCCccCh--hhhHHHHHHHHHHHHCCCEEEEEecc
Confidence 3566789999999999987 22221110000 00000111222 23689999999999999999999754
|
| >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Trichoderma reesei [TaxId: 51453]
Probab=90.59 E-value=0.12 Score=54.36 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=43.8
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCC-------CHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFG-------TMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~G-------t~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-+.+.|+.||++|+|+|-+- ++......+-+....+..++..-| ..+.+++++++|+++||+||+|+..
T Consensus 37 ~~~~~l~~~~~~G~N~iR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~a~~~Gi~vi~~l~~ 112 (344)
T d1qnra_ 37 DVDSTFSHISSSGLKVVRVW-GFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVN 112 (344)
T ss_dssp HHHHHHHHHHHTTCCEEECC-CCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEESCB
T ss_pred HHHHHHHHHHhcCCCEEEEC-CcccccccCCCCccchhhcccccCccccCHHHHHHHHHHHHHHHHcCCeeEeeccC
Confidence 56778999999999999862 221111111111112222222221 2578999999999999999999864
|
| >d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Alpha-galactosidase GalA catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.41 E-value=0.13 Score=55.19 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=36.4
Q ss_pred ccHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCc--CCCCcccC-CCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 597 LGIIEKIDYLKELGVETLWLTPFYSGPNGDIGYD--ISNHTEVG-KDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 597 ~Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~--~~dy~~id-p~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
+.+.+.++.++++|++.|+|= .||. ..|+ .+| .+|. ++|.|++.+|++||++.+-+
T Consensus 23 ~~i~~~a~~~~~~g~~~i~iD---------dgW~~~~gd~-~~d~~~FP---glk~l~~~~h~~G~k~gl~~ 81 (348)
T d1zy9a2 23 EETLKNLKLAKNFPFEVFQID---------DAYEKDIGDW-LVTRGDFP---SVEEMAKVIAENGFIPGIWT 81 (348)
T ss_dssp HHHHHHHHHGGGTTCSEEEEC---------TTSEEETTEE-EEECTTCC---CHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEC---------cccccCCCCc-eECcccCc---CHHHHHHHHHhcCCEEEEEe
Confidence 356777888999999999873 2322 1133 233 3565 68999999955555555443
|
| >d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Bacillus sp. JAMB-602 [TaxId: 244966]
Probab=89.77 E-value=0.16 Score=52.66 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=40.7
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
-..+.|+.||++|+|+|-| |+... ++... +..+.++++|+.|.++||+||+|+-
T Consensus 33 ~~~~d~~~~~~~G~N~VRl-~~~~~-----~~~~~---------~~~~~ld~~v~~a~~~Gi~vildlh 86 (297)
T d1wkya2 33 QATTAIEGIANTGANTVRI-VLSDG-----GQWTK---------DDIQTVRNLISLAEDNNLVAVLEVH 86 (297)
T ss_dssp GHHHHHHHHHTTTCSEEEE-EECCS-----SSSCC---------CCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHCCCcEEEE-eccCC-----CccCc---------cHHHHHHHHHHHHHHCCCceEeecc
Confidence 4567799999999999987 33221 11111 2368899999999999999999964
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=88.67 E-value=0.16 Score=53.58 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=41.6
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCC-C--CCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGK-D--FGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp-~--~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+.+.|+.+|++|+|+|-+-........ .....| . ....+.|+++|+.|.++||+||+|+..
T Consensus 40 ~~~~~l~~~k~~G~N~vR~~~~~~~~~~--------~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 40 KVTNTFQQASKYKMNVARTWAFSHGGSR--------PLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCSSSSS--------CSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHCCCeEEEECCccCccCc--------ccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 5677799999999999987321111110 000000 0 113688999999999999999999754
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.2 Score=55.07 Aligned_cols=57 Identities=7% Similarity=0.086 Sum_probs=38.9
Q ss_pred hhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeeccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
+.++.||++|+|+|-|. | ||+...-..-++.+. ..+-++++|+.|.++||+||||+=
T Consensus 77 ~D~~~i~~~G~N~VRiP-i--------~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH 135 (408)
T d1h4pa_ 77 QDFANIASQGFNLVRIP-I--------GYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLH 135 (408)
T ss_dssp HHHHHHHHTTCCEEEEE-E--------EGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEe-c--------cHHHhcCCCCCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34889999999999884 1 122111111122222 257799999999999999999954
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=88.40 E-value=0.2 Score=52.56 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=40.8
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-++.||+.|+|+|-|- ++..+.. | ....+.++++|+.|+++||+||+|+-.
T Consensus 30 ~~~~~~lk~~G~n~VRi~-vW~~p~~--g------------~~~~~~~~~~v~~a~~~gl~vil~~h~ 82 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQR-VWVNPAD--G------------NYNLDYNIAIAKRAKAAGLGVYIDFHY 82 (332)
T ss_dssp CCHHHHHHHTTCCEEEEE-ECSSCTT--C------------TTSHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccHHHHHHHcCCCEEEee-eeecCCC--C------------ccCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 445678999999999873 5433221 2 225899999999999999999999764
|
| >d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Glycosyl hydrolase domain superfamily: Glycosyl hydrolase domain family: alpha-Amylases, C-terminal beta-sheet domain domain: Bacterial alpha-Amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=88.11 E-value=1.1 Score=34.50 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=44.8
Q ss_pred CeEEEccCCcEEEEEEEcCCcEEEEEEECCCCcEEEEcCCCccCCCcEEEEEccCCCcCC
Q psy15051 1001 DYKISTPNNYVFILTRTEGSTSVYLIINLNSRTETVDLSDCIENGGDVAIFTSSVNSGLA 1060 (1065)
Q Consensus 1001 ~~~~l~~~~~viaf~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~v~~~s~~~~~~ 1060 (1065)
..+.+...=+|.||.|.++...+.|-.|+-+.++.+.+.+ |.|++++.|......
T Consensus 2 kieiingglnvvafrryndkrdlyvyhnlvnrpvkikvas-----gnwtllfnsgdkeit 56 (79)
T d1wzaa1 2 KIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVAS-----GNWTLLFNSGDKEIT 56 (79)
T ss_dssp EEEEECCCTTEEEEEEECSSCEEEEEEECSSSCEEEEEES-----SCEEEEEESSSSCCC
T ss_pred ceEEEcCCeeEEEEEeecCcccEEEEehhcCCcEEEEEec-----CcEEEEEccCCceec
Confidence 3455554557999999999999999999999999999987 888998887665444
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=87.73 E-value=0.14 Score=55.64 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=40.5
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.++.||++|+++|-| ||.= +.+-...-+.+|+.+ ++.++++|+.|+++||+||||+
T Consensus 64 ~~~i~~ik~~Gfn~vRi-Pv~w-----~~~~~~~~~~i~~~~--l~~v~~vV~~a~~~Gl~VIldl 121 (380)
T d1edga_ 64 KQMIDAIKQKGFNTVRI-PVSW-----HPHVSGSDYKISDVW--MNRVQEVVNYCIDNKMYVILNT 121 (380)
T ss_dssp HHHHHHHHHHTCCEEEE-CCCC-----GGGEETTTTEECHHH--HHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEE-cccH-----HHhcCCCCCccCHHH--HHHHHHHHHHHHHcCCEEEEec
Confidence 45689999999999998 4421 111111112444433 6789999999999999999994
|
| >d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase homologue TM1752 species: Thermotoga maritima [TaxId: 2336]
Probab=86.72 E-value=0.32 Score=50.66 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=39.8
Q ss_pred HhhhHHHHHcCcCEEEeC---CCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLT---PFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~---PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-|. ..++... +.+.+++ ...+-++++|++|.++||+||+|+-
T Consensus 23 e~d~~~l~~~G~n~vRlpv~~~~~~~~~--------~~~~~~~--~~l~~ld~~v~~~~~~gi~vildlH 82 (325)
T d1vjza_ 23 EEDFLWMAQWDFNFVRIPMCHLLWSDRG--------NPFIIRE--DFFEKIDRVIFWGEKYGIHICISLH 82 (325)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGTSCSS--------CTTCCCG--GGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecccHHHccCCC--------CCCccCH--HHHHHHHHHHHHHHHcCCcEEEeec
Confidence 566899999999999973 1111111 1112222 2378899999999999999999964
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=86.58 E-value=0.31 Score=53.07 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=39.8
Q ss_pred hhhHHHHHcCcCEEEeCCCCcC-CCCCCCCcCCCCcccCCC-CCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSG-PNGDIGYDISNHTEVGKD-FGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~-~~~~~GY~~~dy~~idp~-~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+.++.||++|+|+|-| ||.-. -.. .+ -++. -+..+.|+++|+.|.++||+||||+=.
T Consensus 72 ~D~~~i~~~G~N~VRi-Pv~~~~~~~------~~---~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~ 130 (394)
T d2pb1a1 72 QDFKQISNLGLNFVRI-PIGYWAFQL------LD---NDPYVQGQVQYLEKALGWARKNNIRVWIDLHG 130 (394)
T ss_dssp HHHHHHHHTTCCEEEE-EEEGGGTCC------CT---TCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHCCCCEEEE-EecHHHhcC------CC---CCccchhHHHHHHHHHHHHHHCCcEEEEEeec
Confidence 3488999999999999 55211 110 00 0111 145788999999999999999999643
|
| >d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelC species: Clostridium thermocellum [TaxId: 1515]
Probab=84.61 E-value=0.29 Score=51.87 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=38.9
Q ss_pred HhhhHHHHHcCcCEEEeCCCCc----CCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYS----GPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~----~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
.+.++.||++|+|+|-| ||.- .... .+ .+++ +..+.|+++|+.|.++||+||||+-
T Consensus 31 e~d~~~i~~~G~n~vRl-pi~~~~~~~~~~-~~-------~~~~--~~~~~ld~~v~~a~~~gi~vild~H 90 (340)
T d1ceoa_ 31 EKDIETIAEAGFDHVRL-PFDYPIIESDDN-VG-------EYKE--DGLSYIDRCLEWCKKYNLGLVLDMH 90 (340)
T ss_dssp HHHHHHHHHHTCCEEEE-EEEGGGTBCSSS-TT-------CBCH--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEe-ecCHHHhccCCC-CC-------ccCH--HHHHHHHHHHHHHHHcCCEEEEEec
Confidence 45689999999999998 4421 1110 00 0110 1257799999999999999999963
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=84.19 E-value=0.47 Score=51.43 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=41.3
Q ss_pred HhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCC--CHHHHHHHHHHHHhcCCceeecccc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFG--TMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~G--t~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
.+-++.||+.|||+|-| ||+..+.. +. ...+..| .++.++++++.||++||+||+|+-.
T Consensus 41 ~d~~~~lk~~G~n~VRl-~vw~~~~~-~~-------~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~ 101 (387)
T d1ur4a_ 41 QDIFKTLKEAGVNYVRV-RIWNDPYD-AN-------GNGYGGGNNDLEKAIQIGKRATANGMKLLADFHY 101 (387)
T ss_dssp CCHHHHHHHTTCCEEEE-EECSCCBC-TT-------CCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccHHHHHHHcCCCEEEe-ecccCCcc-cc-------cCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34589999999999995 45443322 10 1111112 3799999999999999999999754
|
| >d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=84.07 E-value=0.44 Score=50.66 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=41.2
Q ss_pred hhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 601 EKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 601 ~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
+-|..||+.|||+|-|= |...|.. | .-+.+..++++++|+++||+|++|+..
T Consensus 31 d~~~~lk~~G~n~VRlr-vW~~p~~--g------------~~~~~~~~~~~~~a~~~Gm~vll~~hy 82 (334)
T d1foba_ 31 ALETILADAGINSIRQR-VWVNPSD--G------------SYDLDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp CHHHHHHHHTCCEEEEE-ECSCCTT--C------------TTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cHHHHHHHcCCCEEEee-eeeCCCC--C------------cCcHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45778999999999864 5433322 2 236899999999999999999999876
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=83.84 E-value=0.41 Score=53.75 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=44.4
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHH
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDF 647 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edf 647 (1065)
++.+-+|.+++.|++.++|+|+.+...++.+|.+.+=+++||-|=+++++
T Consensus 28 ~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlNPlyIdle~L 77 (500)
T d1eswa_ 28 EARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPL 77 (500)
T ss_dssp HHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcCHHHcCHHhh
Confidence 88899999999999999999999876666899999999999999766554
|
| >d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Thermomonospora fusca [TaxId: 2021]
Probab=83.27 E-value=0.65 Score=47.83 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeeccc
Q psy15051 599 IIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQKQ 666 (1065)
Q Consensus 599 l~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv 666 (1065)
..+.|+.||++|+|+|-|. +... +... ....+.++++|+.|.++||+||||+-
T Consensus 34 ~~~~~~~i~~~G~N~VRl~-~~~~-----~~~~---------~~~~~~~~~~v~~a~~~Gi~vildlh 86 (302)
T d1bqca_ 34 HTQAFADIKSHGANTVRVV-LSNG-----VRWS---------KNGPSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp CTTHHHHHHHTTCSEEEEE-ECCS-----SSSC---------CCCHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred hHHHHHHHHhcCCCEEEEe-cccc-----cccC---------cchHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566889999999999972 2110 0001 12368899999999999999999964
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=82.98 E-value=0.45 Score=50.66 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=39.7
Q ss_pred HhhhHHHHH-cCcCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 600 IEKIDYLKE-LGVETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 600 ~~kLdYLk~-LGvnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.++.|++ +|+|+|-| |+.. .. .-+..+|.+ .+.+++.|+.|.++||+||||+
T Consensus 54 ~~~~~~l~~~~G~N~VRl-p~~~--------~~-~~~~~~~~~--~~~ld~~V~~a~~~GiyVIlD~ 108 (357)
T d1g01a_ 54 ENAFVALSNDWGSNMIRL-AMYI--------GE-NGYATNPEV--KDLVYEGIELAFEHDMYVIVDW 108 (357)
T ss_dssp HHHHHHHHTTSCCSEEEE-EEES--------SS-SSTTTCTTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEE-eeee--------cC-CCCccCHHH--HHHHHHHHHHHHHCCCEEEEee
Confidence 456788875 99999998 3321 11 122445544 6889999999999999999995
|
| >d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.88 E-value=3 Score=44.08 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=39.2
Q ss_pred cHHhhhHHHHHcCcCEEEeCCCCcCCCCCCCCcCCCCc--------ccCCCCCCHHHHHHHHHHHHhcCCceeecccc
Q psy15051 598 GIIEKIDYLKELGVETLWLTPFYSGPNGDIGYDISNHT--------EVGKDFGTMEDFDELVKLVHSKGKQKISQKQT 667 (1065)
Q Consensus 598 Gl~~kLdYLk~LGvnaI~L~PI~~~~~~~~GY~~~dy~--------~idp~~Gt~edfk~LV~~aH~~Gi~VIlDvv~ 667 (1065)
-|.+-|+.+..+++|.++|- +.+. . .|.+....|= ..+..| |.+|+++||+-|+++||+||=.+.+
T Consensus 19 ~lk~~id~ma~~K~N~lhlH-l~D~-~-~~~~e~~~~P~l~~~g~~~~~~~y-T~~d~~~lv~yA~~rgI~iiPEid~ 92 (353)
T d1nowa1 19 IILKTLDAMAFNKFNVLHWH-IVDD-Q-SFPYQSITFPELSNKGSYSLSHVY-TPNDVRMVIEYARLRGIRVLPEFDT 92 (353)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-CCCS-S-CCCBCCSSCHHHHHHHSSSTTSCB-CHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEE-EecC-C-CceeccCCCcchhhcCCCCCCCCc-CHHHHHHHHHHHHHCCCEEEecccc
Confidence 67888999999999988762 0010 0 1222222221 111222 7999999999995555555544443
|
| >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: YicI catalytic domain-like domain: Putative glucosidase YicI, domain 2 species: Escherichia coli [TaxId: 562]
Probab=81.35 E-value=2.8 Score=43.96 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=34.5
Q ss_pred cHHhhhHHHHHcC--cCEEEeCCCCcCCCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 598 GIIEKIDYLKELG--VETLWLTPFYSGPNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 598 Gl~~kLdYLk~LG--vnaI~L~PI~~~~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.+.++.++++| ++.|+|-.-+... |.-.+|.-=..+|- |.++||+++|++|+++++-+
T Consensus 38 ~v~~~~~~~r~~~iP~d~i~iD~~w~~~-----~~~~~f~~d~~~FP---dp~~~i~~l~~~G~~~~l~~ 99 (338)
T d2f2ha4 38 TVNSFIDGMAERNLPLHVFHFDCFWMKA-----FQWCDFEWDPLTFP---DPEGMIRRLKAKGLKICVWI 99 (338)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECGGGBCT-----TCCSSCCBCTTTCS---CHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcceEEEcCchhcC-----CCcCceeeCcccCC---CHHHHHHHHHHCCCeEEEee
Confidence 4667788888877 7888875433221 11223322222343 67899999955555555443
|
| >d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase EngI species: Thermoascus aurantiacus [TaxId: 5087]
Probab=81.21 E-value=0.57 Score=48.93 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=39.1
Q ss_pred HhhhHHHHHcCcCEEEeCCCCc-C--CCCCCCCcCCCCcccCCCCCCHHHHHHHHHHHHhcCCceeecc
Q psy15051 600 IEKIDYLKELGVETLWLTPFYS-G--PNGDIGYDISNHTEVGKDFGTMEDFDELVKLVHSKGKQKISQK 665 (1065)
Q Consensus 600 ~~kLdYLk~LGvnaI~L~PI~~-~--~~~~~GY~~~dy~~idp~~Gt~edfk~LV~~aH~~Gi~VIlDv 665 (1065)
.+.+++||++|+|+|-| ||.- . +.. .++ .+++ ...+.++++|+.|.++||+||+|+
T Consensus 34 ~~di~~l~~~G~N~VRl-Pv~~~~~~~~~-~~~------~~~~--~~~~~l~~~v~~a~~~gl~vIlD~ 92 (305)
T d1h1na_ 34 PNTIDTLISKGMNIFRV-PFMMERLVPNS-MTG------SPDP--NYLADLIATVNAITQKGAYAVVDP 92 (305)
T ss_dssp HHHHHHHHHTTCCEEEE-EECHHHHSCSS-TTS------CCCH--HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEe-eeeHHHhccCC-CCC------ccCH--HHHHHHHHHHHHHHhcCCeEEEec
Confidence 56799999999999987 3321 0 111 111 1111 226789999999999999999995
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