Psyllid ID: psy15052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPLAQEKTSPTLLYTKPSTPHKTSPTVHKHTTSMKPTPTTTILYSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Secondary Structure (PSIPRED)
cEEEEEcccccEEEccccccccccccccEEccccEEEEEEcHHHHccccEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEccccEEEEEcccccccccccEEEEEccEEccccccccccEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccEEEEEEEEcHHHHHHHHHHccccccccccEEEEcccccccccccccccccEEEEcccccEEEEEEEEEcccccccccccEEEEccccHHHHHHHccccccEEEccccccEEEccEEEcccccccccccccccccccccccEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEcccccccccccccccccccccEEcccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEccccEEEEEEEEcccEEEEEHHcccccEEEEEEccccccccccccEEEEEEEEEEEcccccccccccccEEEEEccccccEccEcccEcccccccccccEEEEEEcccccccccccccEEEEEcEEccHHHHHHHccccccccEccccEEEEccccccccccccccccEEEEccEcccEEEEEEEEEccccccccccEEEEEcHHHHHHHHHHcccccEEEEEccccEEEEEEEEccccccEEccEcEEEEEHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLIYIVGVRGHFLTSFlvspglkinpkpcsvnsvegrCMFVWEcintdghhlgmcvdtfmfgsccshnvtkneisplaqektsptllytkpstphktsptvhkhttsmkptptttilyskpyrqtprpmlsyyshkdissknttqrpyvkplkeslgrpvnvysnnekvddfSTESVNSLLTSQIKIrvgeydfskleepypyqergvvkkmvhpkynfftYEYDLALVRLetpvefapnivpiclpgsddlligenatvtgwgrlseggslppvlqkvtvpivsneKCRSMFLRAGRYEFISDIFMcagfdnggrdscqgdsggplqvkgkdgrYFLAGIISWGIgcaeanlpgvctriskfvpwvldtgdsggplqvkgkdgrYFLAGIISWGIgcaeanlpgvctriskfvpwvldtvt
Flexible Loop (DISEMBL)
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKneisplaqektsptllytkpstphktsptvhkhttsmkptptttilyskpyrqtPRPMLSyyshkdissknttqrpyvkplkeslgrpvnvysNNEKVDDFSTESVNSLLTsqikirvgeydfskleepypyqergvvkkMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLseggslppvlqkvtvpivsneKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIskfvpwvldtvt
Low Complexity Region (SEG)
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPLAQEKTSPTLLYtkpstphktsptVhkhttsmkptptttILYSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Disordered region (IsUnstruct)
*LIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTK*********************************************************************************************************VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR**********LQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD***
Disordered Region (DISOPRED)
MLIYIVGVRGHFL********************VEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPL***************************************************************KNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEP*PYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG*****************ISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Disordered Region (DISEMBL)
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPLAQEKTSPTLLYTKPS*****************PTPTTTILYSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Disordered Region (DISPRO)
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPLAQEKTSPTL*******P**TSPTVHK***SMKPTPTTTILYSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIYIVGVRGHFLTSFLVSPGLKINPKPCSVNSVEGRCMFVWECINTDGHHLGMCVDTFMFGSCCSHNVTKNEISPLAQEKTSPTLLYTKPSTPHKTSPTVHKHTTSMKPTPTTTILYSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q05319	787	Serine proteinase stubble	yes	N/A	0.457	0.245	0.730	2e-88
Q0IIH7	855	Suppressor of tumorigenic	yes	N/A	0.409	0.202	0.422	4e-35
Q9Y5Y6	855	Suppressor of tumorigenic	yes	N/A	0.424	0.209	0.408	6e-34
P00765	237	Trypsin-1 OS=Astacus fluv	N/A	N/A	0.419	0.746	0.443	3e-33
P56677	855	Suppressor of tumorigenic	yes	N/A	0.376	0.185	0.430	4e-33
P69526	1061	Transmembrane protease se	no	N/A	0.646	0.257	0.332	1e-32
P14272	638	Plasma kallikrein OS=Ratt	no	N/A	0.419	0.277	0.389	4e-32
Q7Z410	1059	Transmembrane protease se	no	N/A	0.374	0.149	0.418	9e-32
P69525	1065	Transmembrane protease se	no	N/A	0.649	0.257	0.318	1e-31
P26262	638	Plasma kallikrein OS=Mus	no	N/A	0.372	0.246	0.423	1e-31

>sp|Q05319|STUB_DROME Serine proteinase stubble OS=Drosophila melanogaster GN=Sb PE=2 SV=2

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 175/204 (85%)

Query: 166 NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD 225
           NE     +   V+ LL SQI+IRVGEYDFS ++E  PY ERGV KK+VHPKY+F TYEYD
Sbjct: 581 NENWIATAGHCVDDLLISQIRIRVGEYDFSHVQEQLPYIERGVAKKVVHPKYSFLTYEYD 640

Query: 226 LALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS 285
           LALV+LE P+EFAP++ PICLP +D LLIG NATVTGWGRLSEGG+LP VLQ+V+VPIVS
Sbjct: 641 LALVKLEQPLEFAPHVSPICLPETDSLLIGMNATVTGWGRLSEGGTLPSVLQEVSVPIVS 700

Query: 286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           N+ C+SMF+RAGR EFI DIF+CAG++ GG+DSCQGDSGGPLQ K +DGR+FLAGIISWG
Sbjct: 701 NDNCKSMFMRAGRQEFIPDIFLCAGYETGGQDSCQGDSGGPLQAKSQDGRFFLAGIISWG 760

Query: 346 IGCAEANLPGVCTRISKFVPWVLD 369
           IGCAEANLPGVCTRISKF PW+L+
Sbjct: 761 IGCAEANLPGVCTRISKFTPWILE 784

Hormone dependent protease required for epithelial morphogenesis, including the formation of bristles, legs, and wings. Has a dual function, detaches imaginal disk cells from extracellular matrices through its extracellular proteolytic domain and transmits an outside-to-inside signal to its intracellular domain to modify the cytoskeleton during morphogenesis.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q0IIH7|ST14_BOVIN Suppressor of tumorigenicity 14 protein homolog OS=Bos taurus GN=ST14 PE=2 SV=1

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 7/180 (3%)

Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G +D SK   P   QERG+ + + HP +N FT++YD+AL++L+ PVE++  I PICLP 
Sbjct: 676 LGLHDQSKRNAP-GVQERGLQRIIKHPFFNDFTFDYDIALLQLDRPVEYSATIRPICLPA 734

Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
           +D     G+   VTGWG   E G    +LQK  + +++   C  +  +      I+   +
Sbjct: 735 ADYTFPTGKAIWVTGWGHTQEAGQGAMILQKGEIRVINQTTCEHLLPQQ-----ITPRMI 789

Query: 308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           C G+ +GG D+CQGDSGGPL    +DGR F AG++SWG GCA+ N PGV TR+  F  W+
Sbjct: 790 CVGYLSGGVDACQGDSGGPLSSPEEDGRMFQAGVVSWGEGCAQRNKPGVYTRLPVFRDWI 849

Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14 PE=1 SV=2

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 7/186 (3%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +Q    +G +D S+   P   QER + + + HP +N FT++YD+AL+ LE P E++  + 
Sbjct: 670 TQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 728

Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PICLP +  +   G+   VTGWG    GG+   +LQK  + +++   C ++  +      
Sbjct: 729 PICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ----- 783

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   MC GF +GG DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+ 
Sbjct: 784 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 843

Query: 362 KFVPWV 367
            F  W+
Sbjct: 844 LFRDWI 849

Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|P00765|TRYP_ASTFL Trypsin-1 OS=Astacus fluviatilis PE=1 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 107/185 (57%), Gaps = 8/185 (4%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S ++I  GE D S  E     Q   V K ++H  +++   + D++L++L   + F  N+ 
Sbjct: 56  SGLQIVAGELDMSVNEGSE--QTITVSKIILHENFDYDLLDNDISLLKLSGSLTFNNNVA 113

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           PI LP       G N  VTGWG  SEGG+ P VLQKVTVP+VS+ +CR  +   G  E I
Sbjct: 114 PIALPAQGHTATG-NVIVTGWGTTSEGGNTPDVLQKVTVPLVSDAECRDDY---GADE-I 168

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
            D  +CAG   GG+DSCQGDSGGPL      G  +LAGI+SWG GCA    PGV T +S 
Sbjct: 169 FDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSY 227

Query: 363 FVPWV 367
            V W+
Sbjct: 228 HVDWI 232

Astacus fluviatilis (taxid: 6715)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

>sp|P56677|ST14_MOUSE Suppressor of tumorigenicity 14 protein homolog OS=Mus musculus GN=St14 PE=1 SV=2

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 6/165 (3%)

Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLL-IGENATVTG 262
           QE  + + + HP +N FT++YD+AL+ LE  VE++  + PICLP +  +   G+   VTG
Sbjct: 690 QELKLKRIITHPSFNDFTFDYDIALLELEKSVEYSTVVRPICLPDATHVFPAGKAIWVTG 749

Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGD 322
           WG   EGG+   +LQK  + +++   C  +  +      I+   MC GF +GG DSCQGD
Sbjct: 750 WGHTKEGGTGALILQKGEIRVINQTTCEDLMPQQ-----ITPRMMCVGFLSGGVDSCQGD 804

Query: 323 SGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           SGGPL    KDGR F AG++SWG GCA+ N PGV TR+     W+
Sbjct: 805 SGGPLSSAEKDGRMFQAGVVSWGEGCAQRNKPGVYTRLPVVRDWI 849

Degrades extracellular matrix. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|P69526|TMPS9_RAT Transmembrane protease serine 9 OS=Rattus norvegicus GN=Tmprss9 PE=3 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 22/295 (7%)

Query: 91  PSTPHKTSPTVHKHTTSMKPT--PTTTILY----SKPYRQTPRPMLSYYSH--KDISSKN 142
           PSTP  TSP      T+ KPT  PT   L+    +KP     RP +   +     IS+  
Sbjct: 455 PSTPWPTSPESRVPNTTAKPTVAPTPAPLHPSTAAKPQECGARPAMDKPTRIVGGISAV- 513

Query: 143 TTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLE-EPY 201
           + + P+   LKE            ++    +    N     Q++  +G      +   P 
Sbjct: 514 SGEVPWQASLKEGSRHFCGATVVGDRWLLSAAHCFNHTKLEQVQAHLGTVSLLGVGGSPV 573

Query: 202 PYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATV 260
               R V    +HP+YN    ++D+AL+ L  P+ F   I P+CLP       +G    +
Sbjct: 574 KLGLRSVA---LHPRYNPGILDFDVALLELAQPLVFNKYIQPVCLPLAIHKFPVGRKCMI 630

Query: 261 TGWGRLSEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEF-ISDIFMCAGFDNGGRDS 318
           +GWG + EG +  P +LQK +V I+  + C ++      Y F ++D  +CAGF  G  DS
Sbjct: 631 SGWGNMQEGNATKPDILQKASVGIIEQKMCGAL------YNFSLTDRMLCAGFLEGRVDS 684

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
           CQGDSGGPL  +   G ++LAGI+SWGIGCA+A  PGV  RI++   W+L    S
Sbjct: 685 CQGDSGGPLACEETPGVFYLAGIVSWGIGCAQAKKPGVYARITRLKDWILKAMSS 739

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P14272|KLKB1_RAT Plasma kallikrein OS=Rattus norvegicus GN=Klkb1 PE=1 SV=1

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 8/185 (4%)

Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPIC 245
           +I  G  + S++    P+    + + ++H KY      YD+AL++L+TP+ +     PIC
Sbjct: 446 RIYGGILNLSEITNKTPFS--SIKELIIHQKYKMSEGSYDIALIKLQTPLNYTEFQKPIC 503

Query: 246 LPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
           LP   D   I  N  VTGWG   E G    +LQK T+P+V NE+C+  +    R   I+ 
Sbjct: 504 LPSKADTNTIYTNCWVTGWGYTKERGETQNILQKATIPLVPNEECQKKY----RDYVITK 559

Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             +CAG+  GG D+C+GDSGGPL  K   GR+ L GI SWG GCA    PGV T++++++
Sbjct: 560 QMICAGYKEGGIDACKGDSGGPLVCK-HSGRWQLVGITSWGEGCARKEQPGVYTKVAEYI 618

Query: 365 PWVLD 369
            W+L+
Sbjct: 619 DWILE 623

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q7Z410|TMPS9_HUMAN Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2

 Score =  138 bits (347), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 104/165 (63%), Gaps = 7/165 (4%)

Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRL 266
           VV+ + HP YN  T ++D+A++ L +P+ F  +I P+CLP +  +    +   ++GWG L
Sbjct: 275 VVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYL 334

Query: 267 SEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
            E   + P VLQK TV ++    C S++  +     ++D  +CAG+ +G  DSCQGDSGG
Sbjct: 335 KEDFLVKPEVLQKATVELLDQALCASLYGHS-----LTDRMVCAGYLDGKVDSCQGDSGG 389

Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           PL  +   GR+FLAGI+SWGIGCAEA  PGV  R+++   W+L+ 
Sbjct: 390 PLVCEEPSGRFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEA 434

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P69525|TMPS9_MOUSE Transmembrane protease serine 9 OS=Mus musculus GN=Tmprss9 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 15/289 (5%)

Query: 91  PSTPHKTSP-TVHKHTTSMKPTPTTTILYSKPYRQTPRPMLSYYSH--KDISSKNTTQRP 147
           P++P   +P T  K T +  P P      +KP     RP +   +     IS+  + + P
Sbjct: 460 PTSPESWAPNTFAKPTAAPSPVPLHPSTTAKPQECGARPAMDKPTRIVGGISAV-SGEVP 518

Query: 148 YVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERG 207
           +   LKE            ++    +    N     Q++  +G    S L       + G
Sbjct: 519 WQASLKEGPRHFCGATVVGDRWLLSAAHCFNHTKVEQVQAHLG--TVSLLGVGGSPVKLG 576

Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGRL 266
           + +  +HP+YN    ++D+AL+ L  P+ F   I P+CLP       +G    ++GWG +
Sbjct: 577 LRRVALHPRYNPGILDFDVALLELAQPLVFNKYIQPVCLPLAIHKFPVGRKCMISGWGNM 636

Query: 267 SEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEF-ISDIFMCAGFDNGGRDSCQGDSG 324
            EG +  P +LQK +V I+  + C ++      Y F ++D  +CAGF  G  DSCQGDSG
Sbjct: 637 QEGNATKPDILQKASVGIIEQKMCGAL------YNFSLTDRMLCAGFLEGRVDSCQGDSG 690

Query: 325 GPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
           GPL  +   G ++LAGI+SWGIGCA+A  PGV  RI++   W+L    S
Sbjct: 691 GPLACEETPGVFYLAGIVSWGIGCAQAKKPGVYARITRLKDWILKAMSS 739

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P26262|KLKB1_MOUSE Plasma kallikrein OS=Mus musculus GN=Klkb1 PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGRLSEGG 270
           ++H +Y      YD+AL++L+TP+ +     PICLP   D   I  N  VTGWG   E G
Sbjct: 470 IIHQEYKVSEGNYDIALIKLQTPLNYTEFQKPICLPSKADTNTIYTNCWVTGWGYTKEQG 529

Query: 271 SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
               +LQK T+P+V NE+C+  +    R   I+   +CAG+  GG D+C+GDSGGPL  K
Sbjct: 530 ETQNILQKATIPLVPNEECQKKY----RDYVINKQMICAGYKEGGTDACKGDSGGPLVCK 585

Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
              GR+ L GI SWG GCA  + PGV T++S+++ W+L+   S
Sbjct: 586 -HSGRWQLVGITSWGEGCARKDQPGVYTKVSEYMDWILEKTQS 627

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
193582514	606	PREDICTED: hypothetical protein LOC10016	0.483	0.336	0.804	9e-97
242022725	559	predicted protein [Pediculus humanus cor	0.452	0.341	0.789	2e-94
66525606	1197	PREDICTED: hypothetical protein LOC41062	0.443	0.156	0.817	2e-94
383860917	950	PREDICTED: uncharacterized protein LOC10	0.412	0.183	0.817	1e-93
340726063	958	PREDICTED: hypothetical protein LOC10065	0.447	0.197	0.817	2e-93
350405308	958	PREDICTED: hypothetical protein LOC10074	0.447	0.197	0.817	2e-93
380024126	772	PREDICTED: uncharacterized protein LOC10	0.454	0.248	0.812	3e-93
345491050	855	PREDICTED: hypothetical protein LOC10012	0.447	0.221	0.807	1e-92
332021665	1020	Serine proteinase stubble [Acromyrmex ec	0.364	0.150	0.812	4e-92
307187136	853	Serine proteinase stubble [Camponotus fl	0.426	0.211	0.796	9e-92

>gi|193582514|ref|XP_001950267.1| PREDICTED: hypothetical protein LOC100163456 [Acyrthosiphon pisum]

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 186/205 (90%)

Query: 166 NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD 225
           NE     +   V+ LLTSQI+IRVGEYDFS  +EPYP+ ER V +K+VHPKYNFFTYEYD
Sbjct: 400 NENWIATAGHCVDDLLTSQIRIRVGEYDFSSDQEPYPFVERAVARKIVHPKYNFFTYEYD 459

Query: 226 LALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS 285
           LA+VRLE PV++ P+IVPICLPGSDDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVS
Sbjct: 460 LAMVRLEAPVKYTPHIVPICLPGSDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVS 519

Query: 286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           N+KC+SMFLRAGR+E+I DIFMCAGFD+GGRDSCQGDSGGPLQVKG+DGRYFLAGIISWG
Sbjct: 520 NDKCKSMFLRAGRHEYIPDIFMCAGFDDGGRDSCQGDSGGPLQVKGRDGRYFLAGIISWG 579

Query: 346 IGCAEANLPGVCTRISKFVPWVLDT 370
           IGCAEANLPGVCTRISKFVPW+L T
Sbjct: 580 IGCAEANLPGVCTRISKFVPWILQT 604

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022725|ref|XP_002431789.1| predicted protein [Pediculus humanus corporis] gi|212517114|gb|EEB19051.1| predicted protein [Pediculus humanus corporis]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/204 (78%), Positives = 185/204 (90%)

Query: 166 NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD 225
           NE     +   V+ LLTSQI+IRVGEYDFS ++EPYP+ ERG+ KK+VHPKYNFFTYEYD
Sbjct: 353 NENWIATAGHCVDDLLTSQIRIRVGEYDFSSVQEPYPFVERGISKKVVHPKYNFFTYEYD 412

Query: 226 LALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS 285
           LALVRLE+ +EF P+I PICLP SDDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVS
Sbjct: 413 LALVRLESSLEFQPHIAPICLPASDDLLIGENATVTGWGRLSEGGTLPSVLQQVSVPIVS 472

Query: 286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           N+KC+SMFLRAGR+EFI  IF+CAG++NGG+DSCQGDSGGPLQVKGK+GRYFLAGIISWG
Sbjct: 473 NDKCKSMFLRAGRHEFIPKIFLCAGYENGGQDSCQGDSGGPLQVKGKNGRYFLAGIISWG 532

Query: 346 IGCAEANLPGVCTRISKFVPWVLD 369
           IGCAEANLPGVCTRISKFVPW+L+
Sbjct: 533 IGCAEANLPGVCTRISKFVPWILE 556

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66525606|ref|XP_394101.2| PREDICTED: hypothetical protein LOC410624 [Apis mellifera]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 180/192 (93%)

Query: 177  VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
            V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 1002 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 1061

Query: 237  FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
            FAP+I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 1062 FAPHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 1121

Query: 297  GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
            GR+EFI DIF+CAG+++GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 1122 GRHEFIPDIFLCAGYESGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 1181

Query: 357  CTRISKFVPWVL 368
            CTRISKFVPW+L
Sbjct: 1182 CTRISKFVPWIL 1193

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860917|ref|XP_003705934.1| PREDICTED: uncharacterized protein LOC100875386 [Megachile rotundata]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 180/192 (93%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 755 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 814

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FAP+I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 815 FAPHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 874

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+EFI DIF+CAG+++GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 875 GRHEFIPDIFLCAGYESGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 934

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW+L
Sbjct: 935 CTRISKFVPWIL 946

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726063|ref|XP_003401382.1| PREDICTED: hypothetical protein LOC100651177 [Bombus terrestris]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 180/192 (93%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 763 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 822

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FAP+I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 823 FAPHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 882

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+EFI DIF+CAG+++GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 883 GRHEFIPDIFLCAGYESGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 942

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW+L
Sbjct: 943 CTRISKFVPWIL 954

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405308|ref|XP_003487395.1| PREDICTED: hypothetical protein LOC100749353 [Bombus impatiens]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 180/192 (93%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 763 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 822

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FAP+I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 823 FAPHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 882

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+EFI DIF+CAG+++GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 883 GRHEFIPDIFLCAGYESGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 942

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW+L
Sbjct: 943 CTRISKFVPWIL 954

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024126|ref|XP_003695857.1| PREDICTED: uncharacterized protein LOC100864886 [Apis florea]

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 180/192 (93%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 577 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 636

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FAP+I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 637 FAPHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 696

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+EFI DIF+CAG+++GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 697 GRHEFIPDIFLCAGYESGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 756

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW++
Sbjct: 757 CTRISKFVPWIM 768

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491050|ref|XP_001604834.2| PREDICTED: hypothetical protein LOC100121240 [Nasonia vitripennis]

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 179/192 (93%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLTSQI+IRVGEYDFS ++E  PY ERG+ KK+VHPKYNFFT+EYDLALVRLETP+ 
Sbjct: 660 VDDLLTSQIRIRVGEYDFSSVQERLPYVERGITKKVVHPKYNFFTFEYDLALVRLETPLS 719

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FAP+I PICLP SD+LLIGEN TVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 720 FAPHISPICLPASDELLIGENGTVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 779

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+EFI +IF+CAG++ GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 780 GRHEFIPEIFLCAGYETGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 839

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW+L
Sbjct: 840 CTRISKFVPWIL 851

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021665|gb|EGI62024.1| Serine proteinase stubble [Acromyrmex echinatior]

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 178/192 (92%)

Query: 177  VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
            V+ LLTSQI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 825  VDDLLTSQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 884

Query: 237  FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
            FA +I PICLP +DDLLIGENATVTGWGRLSEGG+LP VLQ+V+VPIVSN++C+SMFLRA
Sbjct: 885  FAAHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSVLQEVSVPIVSNDRCKSMFLRA 944

Query: 297  GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
            GR+EFI DIF+CAG++ GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 945  GRHEFIPDIFLCAGYETGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 1004

Query: 357  CTRISKFVPWVL 368
            CTRISKFVPW+L
Sbjct: 1005 CTRISKFVPWIL 1016

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187136|gb|EFN72380.1| Serine proteinase stubble [Camponotus floridanus]

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 153/192 (79%), Positives = 177/192 (92%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+ LLT+QI+IRVGEYDFS ++E  PY ERGV KK+VHPKYNFFTYEYDLALVRLE+ + 
Sbjct: 658 VDDLLTTQIRIRVGEYDFSSVQERLPYVERGVAKKVVHPKYNFFTYEYDLALVRLESSLT 717

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
           FA +I PICLP +DDLLIGENATVTGWGRLSEGG+LP +LQ+V+VPIVSN++C+SMFLRA
Sbjct: 718 FAAHISPICLPATDDLLIGENATVTGWGRLSEGGTLPSILQEVSVPIVSNDRCKSMFLRA 777

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR+E I DIF+CAG++ GG+DSCQGDSGGPLQV+GKDGRYFLAGIISWGIGCAEANLPGV
Sbjct: 778 GRHEVIPDIFLCAGYETGGQDSCQGDSGGPLQVRGKDGRYFLAGIISWGIGCAEANLPGV 837

Query: 357 CTRISKFVPWVL 368
           CTRISKFVPW+L
Sbjct: 838 CTRISKFVPWIL 849

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
FB|FBgn0003319	787	Sb "Stubble" [Drosophila melan	0.457	0.245	0.761	1.9e-104
FB|FBgn0265011	1041	Np "Notopleural" [Drosophila m	0.478	0.194	0.522	1.4e-63
FB|FBgn0033362	561	CG8172 [Drosophila melanogaste	0.450	0.338	0.505	9.9e-52
FB|FBgn0033359	1693	CG8213 [Drosophila melanogaste	0.440	0.109	0.475	1.5e-48
UNIPROTKB|F1NP62	983	F1NP62 "Uncharacterized protei	0.374	0.160	0.436	1.2e-47
UNIPROTKB|Q7Z410	1059	TMPRSS9 "Transmembrane proteas	0.390	0.155	0.416	9.4e-45
UNIPROTKB|E1B9Z9	1095	TMPRSS9 "Uncharacterized prote	0.374	0.144	0.406	1.8e-44
ZFIN|ZDB-GENE-050208-573	800	tmprss9 "transmembrane proteas	0.372	0.196	0.423	2.5e-44
UNIPROTKB|I3LDL1	1047	TMPRSS9 "Uncharacterized prote	0.381	0.153	0.4	7.9e-42
RGD|1309581	1061	Tmprss9 "transmembrane proteas	0.353	0.140	0.428	1.6e-31

FB|FBgn0003319 Sb "Stubble" [Drosophila melanogaster (taxid:7227)]

 Score = 820 (293.7 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
 Identities = 147/193 (76%), Positives = 172/193 (89%)

Query:   177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
             V+ LL SQI+IRVGEYDFS ++E  PY ERGV KK+VHPKY+F TYEYDLALV+LE P+E
Sbjct:   592 VDDLLISQIRIRVGEYDFSHVQEQLPYIERGVAKKVVHPKYSFLTYEYDLALVKLEQPLE 651

Query:   237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
             FAP++ PICLP +D LLIG NATVTGWGRLSEGG+LP VLQ+V+VPIVSN+ C+SMF+RA
Sbjct:   652 FAPHVSPICLPETDSLLIGMNATVTGWGRLSEGGTLPSVLQEVSVPIVSNDNCKSMFMRA 711

Query:   297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
             GR EFI DIF+CAG++ GG+DSCQGDSGGPLQ K +DGR+FLAGIISWGIGCAEANLPGV
Sbjct:   712 GRQEFIPDIFLCAGYETGGQDSCQGDSGGPLQAKSQDGRFFLAGIISWGIGCAEANLPGV 771

Query:   357 CTRISKFVPWVLD 369
             CTRISKF PW+L+
Sbjct:   772 CTRISKFTPWILE 784

GO:0007010 "cytoskeleton organization" evidence=NAS;IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0051017 "actin filament bundle assembly" evidence=IMP

FB|FBgn0265011 Np "Notopleural" [Drosophila melanogaster (taxid:7227)]

 Score = 558 (201.5 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
 Identities = 106/203 (52%), Positives = 142/203 (69%)

Query:   166 NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD 225
             NE     +   V+++  S + +R+GEYD ++ EEPY YQER V     HP+++  T+EYD
Sbjct:   833 NENWAITAAHCVDNVPPSDLLLRLGEYDLAEEEEPYGYQERRVQIVASHPQFDPRTFEYD 892

Query:   226 LALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS 285
             LAL+R   PV F PNI+P+C+P +D+  IG+ A VTGWGRL E G LP VLQ+V VP+++
Sbjct:   893 LALLRFYEPVIFQPNIIPVCVPDNDENFIGQTAFVTGWGRLYEDGPLPSVLQEVAVPVIN 952

Query:   286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISW 344
             N  C SM+  AG  E I  IF+CAG+  GG DSC+GDSGGP+ ++ + D R+ L G+ISW
Sbjct:   953 NTICESMYRSAGYIEHIPHIFICAGWKKGGYDSCEGDSGGPMVLQRESDKRFHLGGVISW 1012

Query:   345 GIGCAEANLPGVCTRISKFVPWV 367
             GIGCAEAN PGV TRIS+F  W+
Sbjct:  1013 GIGCAEANQPGVYTRISEFRDWI 1035

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0033362 CG8172 [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 97/192 (50%), Positives = 130/192 (67%)

Query:   177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
             V S   S +KIR+GE+D    EE   ++E G+ +K VHP YN   +  D+AL+RL+  V 
Sbjct:   362 VASTPNSNMKIRLGEWDVRGQEERLNHEEYGIERKEVHPHYNPADFVNDVALIRLDRNVV 421

Query:   237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLR 295
             +  +I+P+CLP S   L G+ ATV GWGR   G S +P VLQ+V V ++SN++C+  F  
Sbjct:   422 YKQHIIPVCLPPSTTKLTGKMATVAGWGRTRHGQSTVPSVLQEVDVEVISNDRCQRWFRA 481

Query:   296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG 355
             AGR E I D+F+CAG+ +GGRDSCQGDSGGPL +   DGR  L G++SWGIGC   +LPG
Sbjct:   482 AGRREAIHDVFLCAGYKDGGRDSCQGDSGGPLTLT-MDGRKTLIGLVSWGIGCGREHLPG 540

Query:   356 VCTRISKFVPWV 367
             V T I +FVPW+
Sbjct:   541 VYTNIQRFVPWI 552

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0033359 CG8213 [Drosophila melanogaster (taxid:7227)]

 Score = 437 (158.9 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
 Identities = 89/187 (47%), Positives = 120/187 (64%)

Query:   181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
             L S + + +GE+D S   E      + V + +VH +Y+  T+E DLAL+ L++PV+F  +
Sbjct:  1501 LASLVAV-MGEFDISGDLESKRSVTKNVKRVIVHRQYDPATFENDLALLELDSPVQFDTH 1559

Query:   241 IVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
             IVPIC+P       G  ATVTGWGRL  GG +P VLQ+V VPI+ N  C+ MF  AG  +
Sbjct:  1560 IVPICMPNDVADFTGRMATVTGWGRLKYGGGVPSVLQEVQVPIIENSVCQEMFHTAGHNK 1619

Query:   301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
              I   F+CAG+ NG +DSC+GDSGGPL ++  DGRY LAG +S GI CA   LPGV  R 
Sbjct:  1620 KILTSFLCAGYANGQKDSCEGDSGGPLVLQRPDGRYELAGTVSHGIKCAAPYLPGVYMRT 1679

Query:   361 SKFVPWV 367
             + + PW+
Sbjct:  1680 TFYKPWL 1686

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

UNIPROTKB|F1NP62 F1NP62 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 72/165 (43%), Positives = 100/165 (60%)

Query:   207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGR 265
             G+ + + HP YN  T +YD+A++ L+ PV F   I P+CLP         +   ++GWG 
Sbjct:   254 GIARIIPHPSYNTDTADYDVAVLELKRPVTFTKYIQPVCLPHAGHHFPTNKKCLISGWGY 313

Query:   266 LSEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSG 324
             L E   + P  LQK TV ++    C S++  A     ++D  +CAG+  G  DSCQGDSG
Sbjct:   314 LKEDFLVKPEFLQKATVKLLDQALCSSLYSHA-----LTDRMLCAGYLEGKIDSCQGDSG 368

Query:   325 GPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
             GPL  +   G++FLAGI+SWGIGCAEA  PGV TR++K   W+LD
Sbjct:   369 GPLVCEEPSGKFFLAGIVSWGIGCAEARRPGVYTRVTKLRDWILD 413

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q7Z410 TMPRSS9 "Transmembrane protease serine 9" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
 Identities = 72/173 (41%), Positives = 108/173 (62%)

Query:   208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRL 266
             VV+ + HP YN  T ++D+A++ L +P+ F  +I P+CLP +  +    +   ++GWG L
Sbjct:   275 VVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYL 334

Query:   267 SEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
              E   + P VLQK TV ++    C S++  +     ++D  +CAG+ +G  DSCQGDSGG
Sbjct:   335 KEDFLVKPEVLQKATVELLDQALCASLYGHS-----LTDRMVCAGYLDGKVDSCQGDSGG 389

Query:   326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD-TGDSGGPL 377
             PL  +   GR+FLAGI+SWGIGCAEA  PGV  R+++   W+L+ T  +  PL
Sbjct:   390 PLVCEEPSGRFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPL 442

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E1B9Z9 TMPRSS9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 67/165 (40%), Positives = 103/165 (62%)

Query:   208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIG-ENATVTGWGRL 266
             V + + HP YN  T ++D+A++ L  P+ F+ ++ P+CLP +  +    +   ++GWG L
Sbjct:   309 VARIITHPSYNSDTADFDVAVLELGRPLPFSRHVQPVCLPAASHIFPPRKKCLISGWGYL 368

Query:   267 SEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
              E   + P +LQK TV ++    C S++  +     ++D  +CAG+ +G  DSCQGDSGG
Sbjct:   369 KENFLVKPEMLQKATVELLDQALCTSLYGHS-----LTDRMVCAGYLDGKVDSCQGDSGG 423

Query:   326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
             PL  +   GR+FLAGI+SWGIGCAEA  PGV  R++    W+L+T
Sbjct:   424 PLVCEESSGRFFLAGIVSWGIGCAEAQHPGVYARVTSLRDWILET 468

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-050208-573 tmprss9 "transmembrane protease, serine 9" [Danio rerio (taxid:7955)]

 Score = 357 (130.7 bits), Expect = 2.5e-44, Sum P(3) = 2.5e-44
 Identities = 69/163 (42%), Positives = 104/163 (63%)

Query:   209 VKKMV-HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRL 266
             +K +V  PKY+  T + D+ ++ LETP++F+  + P+C+P S  +   G+N  V+GWG L
Sbjct:   316 IKSLVMSPKYDPMTTDSDVTVLELETPLKFSHYVQPVCIPSSSHVFTPGQNCIVSGWGAL 375

Query:   267 SEGGS-LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
             ++  + +P  LQK  V I+ ++ C    +  G    ++   MCAGF  G  DSCQGDSGG
Sbjct:   376 NQYTTEVPSTLQKAIVKIIDSKVCNKSSVYRGA---LTQNMMCAGFLQGKVDSCQGDSGG 432

Query:   326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL 368
             PL  +   GRYFLAGI+SWG+GCA+ N PGV +R++K   W++
Sbjct:   433 PLACEVAAGRYFLAGIVSWGVGCAQINKPGVYSRVTKLRNWIV 475

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|I3LDL1 TMPRSS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 7.9e-42, Sum P(2) = 7.9e-42
 Identities = 68/170 (40%), Positives = 104/170 (61%)

Query:   207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGR 265
             G+ + ++HP+YN    ++D+A++ L  P+ F   + P+CLP       +G    ++GWG 
Sbjct:   562 GLRRAVLHPQYNPSILDFDVAVLELARPLVFNKYVQPVCLPLAIQKFPVGRKCMISGWGN 621

Query:   266 LSEGGSLPP-VLQKVTVPIVSNEKCRSMFLRAGRYEF-ISDIFMCAGFDNGGRDSCQGDS 323
               EG +  P +LQ+ +V I+  + C ++      Y F ++D  +CAGF  G  DSCQGDS
Sbjct:   622 TQEGNATKPDILQRASVGIIDQKACSAL------YNFSLTDRMICAGFLEGKVDSCQGDS 675

Query:   324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
             GGPL  +   G ++LAGI+SWGIGCA+A  PGV TRI++   W++DT  S
Sbjct:   676 GGPLACEETPGVFYLAGIVSWGIGCAQAKKPGVYTRITRLKGWIVDTMSS 725

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

RGD|1309581 Tmprss9 "transmembrane protease, serine 9" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
 Identities = 66/154 (42%), Positives = 89/154 (57%)

Query:   214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLP 273
             HP YN +T +YD+AL+ L  PV  +  + PICLPG      G    +TGWG L EGGS+ 
Sbjct:   907 HPFYNIYTLDYDVALLELAGPVRRSRLVRPICLPGPTRPPEGARCVITGWGSLREGGSMA 966

Query:   274 PVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD 333
               LQK  V ++S + CR  +        IS   +CAGF  GG DSC GD+GGPL  +   
Sbjct:   967 RQLQKAAVRVLSEQTCRRFYPVQ-----ISSRMLCAGFPQGGVDSCSGDAGGPLACREPS 1021

Query:   334 GRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             G++ L G+ SWG GC   + PGV TR++  + W+
Sbjct:  1022 GQWVLTGVTSWGYGCGRPHFPGVYTRVAAVLGWI 1055

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05319	STUB_DROME	3, ., 4, ., 2, 1, ., -	0.7303	0.4573	0.2452	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	422
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	8e-74
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	6e-70
pfam00089	218	pfam00089, Trypsin, Trypsin	1e-48
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	3e-12
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	4e-07

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  230 bits (588), Expect = 8e-74
 Identities = 93/192 (48%), Positives = 119/192 (61%), Gaps = 7/192 (3%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V S   S   +R+G +D S  E     Q   V K +VHP YN  TY+ D+AL++L+ PV 
Sbjct: 44  VYSSAPSNYTVRLGSHDLSSNEGGG--QVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVT 101

Query: 237 FAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
            + N+ PICLP S   L  G   TV+GWGR SEGG LP VLQ+V VPIVSN +C+  +  
Sbjct: 102 LSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAY-- 159

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG 355
                 I+D  +CAG   GG+D+CQGDSGGPL V   +GR  L GI+SWG GCA  N PG
Sbjct: 160 -SYGGTITDNMLCAGGLEGGKDACQGDSGGPL-VCNDNGRGVLVGIVSWGSGCARPNYPG 217

Query: 356 VCTRISKFVPWV 367
           V TR+S ++ W+
Sbjct: 218 VYTRVSSYLDWI 229

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  220 bits (562), Expect = 6e-70
 Identities = 92/193 (47%), Positives = 119/193 (61%), Gaps = 10/193 (5%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V     S I++R+G +D S  EE    Q   V K ++HP YN  TY+ D+AL++L+ PV 
Sbjct: 45  VRGSDPSNIRVRLGSHDLSSGEE---GQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVT 101

Query: 237 FAPNIVPICLPGSDDLLI-GENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFL 294
            + N+ PICLP S+  +  G   TV+GWGR SEG GSLP  LQ+V VPIVSN  CR    
Sbjct: 102 LSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRR--- 158

Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
                  I+D  +CAG   GG+D+CQGDSGGPL     DGR+ L GI+SWG GCA    P
Sbjct: 159 AYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVC--NDGRWVLVGIVSWGSGCARPGKP 216

Query: 355 GVCTRISKFVPWV 367
           GV TR+S ++ W+
Sbjct: 217 GVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  164 bits (417), Expect = 1e-48
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 16/186 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             +++ +G ++    E     Q+  V K +VHP YN  T   D+AL++L++PV     + 
Sbjct: 48  KSVRVVLGAHNIVLREGGE--QKFDVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVR 104

Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PICLP +   L +G   TV+GWG     G LP  LQ+VTVP+VS E CRS +        
Sbjct: 105 PICLPTASSDLPVGTTCTVSGWGNTKTLG-LPDTLQEVTVPVVSRETCRSAYGGT----- 158

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           ++D  +CAG   GG+D+CQGDSGGPL          L GI+SWG GCA  N PGV T +S
Sbjct: 159 VTDNMICAGA--GGKDACQGDSGGPLVCSDG----ELIGIVSWGYGCASGNYPGVYTPVS 212

Query: 362 KFVPWV 367
            ++ W+
Sbjct: 213 SYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 30/202 (14%)

Query: 203 YQERGVVKKM-VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVT 261
             ERG V+ + VH  Y+      D+A++ L          +P     S D       +VT
Sbjct: 102 QAERGHVRTIYVHEFYSPGNLGNDIAVLELARAA-----SLPRVKITSFDASDTFLNSVT 156

Query: 262 GWGRLSEGG------SLPP-------VLQKVTVPIVSNEKCRSMFLRA----GRYEFISD 304
               ++ G       S  P       +L +V V  V    C      A    G       
Sbjct: 157 TVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTG- 215

Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKF 363
              CAG     +D+CQGDSGGP+  KG++GR    G++SWG G C    +PGV T +S +
Sbjct: 216 --FCAG--RPPKDACQGDSGGPIFHKGEEGRVQR-GVVSWGDGGCGGTLIPGVYTNVSNY 270

Query: 364 VPWVLDTGDSGGPLQVKGKDGR 385
             W+    +    LQ +    R
Sbjct: 271 QDWIAAMTNGLSYLQFRPLGYR 292

Length = 413

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLD 419
           GDSGGP+  KG++GR    G++SWG G C    +PGV T +S +  W+  
Sbjct: 228 GDSGGPIFHKGEEGRVQR-GVVSWGDGGCGGTLIPGVYTNVSNYQDWIAA 276

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.97
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.58
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.48
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	99.04
KOG3627|consensus	256		98.49
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.2
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.15
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	98.13
PRK10898	353	serine endoprotease; Provisional	98.04
COG5640	413	Secreted trypsin-like serine protease [Posttransla	97.99
PRK10139	455	serine endoprotease; Provisional	97.86
PRK10942	473	serine endoprotease; Provisional	97.71
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	97.66
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	97.53
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	97.48
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	95.84
smart00680	52	CLIP Clip or disulphide knot domain. Present in ho	87.77
PF12032	54	CLIP: Regulatory CLIP domain of proteinases; Inter	86.64
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	81.8
PF00548	172	Peptidase_C3: 3C cysteine protease (picornain 3C);	81.18

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=7.5e-43  Score=321.16  Aligned_cols=226  Identities=42%  Similarity=0.704  Sum_probs=195.5

Q ss_pred             CCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+..++|||+|+|+.. ....|+|+||+++||||||||+.......+.|++|..+......  ..+.+.|.++++||+|
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~--~~~~~~v~~~~~hp~y   82 (232)
T cd00190           5 SEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEG--GGQVIKVKKVIVHPNY   82 (232)
T ss_pred             eECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCCC--ceEEEEEEEEEECCCC
Confidence            55778999999999977 56789999999999999999998765678999999887765322  2578899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC-CCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....+|||||||++++.++++++|||||... ....+..+.++|||...........++...+.+++.+.|...+.. 
T Consensus        83 ~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-  161 (232)
T cd00190          83 NPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSY-  161 (232)
T ss_pred             CCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHhhhhccC-
Confidence            998889999999999999999999999999875 455688999999998766555678899999999999999988753 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                        ...+.+.++|+.......+.|.|||||||++. .+++|+|+||+|++..|...+.|++|++|+.|++||+++
T Consensus       162 --~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~-~~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         162 --GGTITDNMLCAGGLEGGKDACQGDSGGPLVCN-DNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             --cccCCCceEeeCCCCCCCccccCCCCCcEEEE-eCCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence              11378899999865547789999999999998 458999999999998898668899999999999999874

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=5.7e-41  Score=314.53  Aligned_cols=234  Identities=37%  Similarity=0.647  Sum_probs=193.1

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEecC--CCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCC-cEEE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKESL--GRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYP-YQER  206 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~-~~~~  206 (422)
                      ++.++   .++.+++|||+|+|+...  .+.|+|+||+++||||||||+... .. .+.|++|++.......... .+..
T Consensus        12 ~i~~g---~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~   87 (256)
T KOG3627|consen   12 RIVGG---TEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVG   87 (256)
T ss_pred             CEeCC---ccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhhc
Confidence            44444   467788999999999876  568999999999999999999873 22 8899999876654422211 2455


Q ss_pred             eEEEEEECCCCCCCCCC-CceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCC-CCCCCCceEEEE
Q psy15052        207 GVVKKMVHPKYNFFTYE-YDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEG-GSLPPVLQKVTV  281 (422)
Q Consensus       207 ~V~~i~iHp~y~~~~~~-nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v  281 (422)
                      .|.++++||+|+..... ||||||+|++++.|+++|+|||||....   ...+..+.++|||.+... ...+..|+++.+
T Consensus        88 ~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  167 (256)
T KOG3627|consen   88 DVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDV  167 (256)
T ss_pred             eeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEE
Confidence            58889999999998877 9999999999999999999999985543   345588999999987654 356888999999


Q ss_pred             eccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeec
Q psy15052        282 PIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI  360 (422)
Q Consensus       282 ~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V  360 (422)
                      .+++.+.|...+....   .+.+.++||+......++|+|||||||++.... +|+++||+|||.+ |+..+.|++||+|
T Consensus       168 ~i~~~~~C~~~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~-~~~~~GivS~G~~~C~~~~~P~vyt~V  243 (256)
T KOG3627|consen  168 PIISNSECRRAYGGLG---TITDTMLCAGGPEGGKDACQGDSGGPLVCEDNG-RWVLVGIVSWGSGGCGQPNYPGVYTRV  243 (256)
T ss_pred             eEcChhHhcccccCcc---ccCCCEEeeCccCCCCccccCCCCCeEEEeeCC-cEEEEEEEEecCCCCCCCCCCeEEeEh
Confidence            9999999998886432   256678999975677889999999999998544 8999999999988 9988899999999


Q ss_pred             ccccccccccCC
Q psy15052        361 SKFVPWVLDTGD  372 (422)
Q Consensus       361 ~~y~~WI~~~i~  372 (422)
                      +.|.+||++.+.
T Consensus       244 ~~y~~WI~~~~~  255 (256)
T KOG3627|consen  244 SSYLDWIKENIG  255 (256)
T ss_pred             HHhHHHHHHHhc
Confidence            999999998774

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=3.3e-39  Score=296.88  Aligned_cols=221  Identities=42%  Similarity=0.722  Sum_probs=189.7

Q ss_pred             CCCCCCCcCeEEEEEecC-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESL-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|.|+... ...|+|+||++++|||||||+.......+.|++|..+.....+   .+.+.|.++++||+|
T Consensus         6 ~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~~---~~~~~v~~~~~~p~~   82 (229)
T smart00020        6 SEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGEE---GQVIKVSKVIIHPNY   82 (229)
T ss_pred             CcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCCC---ceEEeeEEEEECCCC
Confidence            567889999999999876 6679999999999999999998755568999999887655432   277899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC-CCCCCCeEEEEEecccCC-CCCCCCCceEEEEeccChhhHHHHHhh
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      +.....+|||||||++|+.+++.++|+||+... ....+..+.++|||.... .......++...+.+++.+.|...+..
T Consensus        83 ~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  162 (229)
T smart00020       83 NPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSG  162 (229)
T ss_pred             CCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhhhcc
Confidence            988889999999999999999999999999863 355688999999998753 234567889999999999999987754


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      .   ..+.+.++|++......+.|.|||||||+... + +|+|+||+|+|..|...+.|.+|+||++|++||
T Consensus       163 ~---~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~-~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      163 G---GAITDNMLCAGGLEGGKDACQGDSGGPLVCND-G-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             c---cccCCCcEeecCCCCCCcccCCCCCCeeEEEC-C-CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            2   13788999998655467899999999999984 3 999999999999998778899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.2e-37  Score=282.51  Aligned_cols=214  Identities=37%  Similarity=0.701  Sum_probs=184.3

Q ss_pred             CCCCCCCcCeEEEEEecC-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESL-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|.|+... .++|+|+||+++||||||||+..  ..++.+++|..........  .+.+.|++++.||+|
T Consensus         5 ~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~--~~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~h~~~   80 (220)
T PF00089_consen    5 DPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG--ASDIKVRLGTYSIRNSDGS--EQTIKVSKIIIHPKY   80 (220)
T ss_dssp             EECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS--GGSEEEEESESBTTSTTTT--SEEEEEEEEEEETTS
T ss_pred             EECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc--ccccccccccccccccccc--ccccccccccccccc
Confidence            567889999999999887 67899999999999999999987  5689999998444333321  488999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC-CCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....+|||||||++++.+.+.+.|+||+... ....+..+.+.||+.....+ ....++...+.+++.+.|...+.. 
T Consensus        81 ~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~-  158 (220)
T PF00089_consen   81 DPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTCRSSYND-  158 (220)
T ss_dssp             BTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHHHHHTTT-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-
Confidence            998889999999999999999999999999844 34678899999999865544 567899999999999999987432 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                          .+.+.++|+... ...+.|.|||||||++.+.    +|+||++++..|...+.|.+|+||+.|++||
T Consensus       159 ----~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~----~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  159 ----NLTPNMICAGSS-GSGDACQGDSGGPLICNNN----YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             ----TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE----EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             ----cccccccccccc-cccccccccccccccccee----eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence                267889999865 5688999999999998744    8999999999999888899999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=238.98  Aligned_cols=241  Identities=21%  Similarity=0.302  Sum_probs=173.5

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEecC-----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKESL-----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE  205 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~  205 (422)
                      ++.++   +.|+.++||++|++....     ..+|+|+++..|||||||||+....+-...+..+..++++..+   .+.
T Consensus        32 rIigG---s~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~Sq---~~r  105 (413)
T COG5640          32 RIIGG---SNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSSQ---AER  105 (413)
T ss_pred             eEecC---cccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEeccccccc---ccC
Confidence            44555   689999999999997433     4579999999999999999998755434444555555554444   467


Q ss_pred             EeEEEEEECCCCCCCCCCCceEEEEECCCcccCC-CeeeeecCC--CCCCCCCCeEEEEEecccCCCC-----CCCCCce
Q psy15052        206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAP-NIVPICLPG--SDDLLIGENATVTGWGRLSEGG-----SLPPVLQ  277 (422)
Q Consensus       206 ~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~-~v~PicLp~--~~~~~~~~~~~v~GwG~~~~~~-----~~~~~L~  277 (422)
                      ..|.+++.|..|...++.||+|+++|.++..... .+.-..-+.  ..+..........+|+.+....     +....|+
T Consensus       106 g~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~  185 (413)
T COG5640         106 GHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILH  185 (413)
T ss_pred             cceEEEeeecccccccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccceee
Confidence            7899999999999999999999999999664321 111111111  0112223344556666543321     2224789


Q ss_pred             EEEEeccChhhHHHHHhhcCC-cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCc
Q psy15052        278 KVTVPIVSNEKCRSMFLRAGR-YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPG  355 (422)
Q Consensus       278 ~~~v~v~~~~~C~~~~~~~~~-~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~  355 (422)
                      +..+...+...|...++.... .....-.-+|++..  ..++|+||||||++.+..++ ..++||+|||.+ |+....|+
T Consensus       186 e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~--~~daCqGDSGGPi~~~g~~G-~vQ~GVvSwG~~~Cg~t~~~g  262 (413)
T COG5640         186 EVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRP--PKDACQGDSGGPIFHKGEEG-RVQRGVVSWGDGGCGGTLIPG  262 (413)
T ss_pred             eeeeeeechHHhhhhccccccCCCCCCccceecCCC--CcccccCCCCCceEEeCCCc-cEEEeEEEecCCCCCCCCcce
Confidence            999999999999988852211 11122223999844  48999999999999985544 479999999987 99999999


Q ss_pred             eeeecccccccccccCCCCCCcccc
Q psy15052        356 VCTRISKFVPWVLDTGDSGGPLQVK  380 (422)
Q Consensus       356 vyt~V~~y~~WI~~~i~~~~pl~~~  380 (422)
                      |||+|+.|.+||..+++.-++++..
T Consensus       263 VyT~vsny~~WI~a~~~~l~~~~~r  287 (413)
T COG5640         263 VYTNVSNYQDWIAAMTNGLSYLQFR  287 (413)
T ss_pred             eEEehhHHHHHHHHHhcCCCccccc
Confidence            9999999999999988876666544

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.58  E-value=6.1e-14  Score=133.31  Aligned_cols=201  Identities=19%  Similarity=0.234  Sum_probs=125.6

Q ss_pred             CCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCc-----------------eEEEE---Eeeeec
Q psy15052        139 SSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTS-----------------QIKIR---VGEYDF  194 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~-----------------~~~V~---lG~~~~  194 (422)
                      ..+...+.||+|.+.....    .+++|+|||+||||||+||+......                 .+.|-   +-....
T Consensus        46 ~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~~C~~~~~~l~vP~~~l~~~~v  125 (282)
T PF03761_consen   46 TPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNKKCEGNNNHLIVPEEVLSKIDV  125 (282)
T ss_pred             cccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccceeeCCCceEEeCHHHhccEEE
Confidence            5567789999999986542    34799999999999999999632110                 11110   000000


Q ss_pred             --ccCCCCCCcEEEeEEEEEECCCC----CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccC
Q psy15052        195 --SKLEEPYPYQERGVVKKMVHPKY----NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLS  267 (422)
Q Consensus       195 --~~~~~~~~~~~~~V~~i~iHp~y----~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~  267 (422)
                        .............|.++++--.-    .......+++||+|+++  ++....|+||+.... ...+..+.+.|+    
T Consensus       126 ~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~~~~~~~~~~~yg~----  199 (282)
T PF03761_consen  126 RCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSSTNWEKGDEVDVYGF----  199 (282)
T ss_pred             EeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCCccccccCceEEEeec----
Confidence              00000001233566666663222    23344689999999998  778899999998754 334666667666    


Q ss_pred             CCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        268 EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       268 ~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                         .....+....+.+.....                   |..........|.+|+||||+.. .+++|+|+||.+.+..
T Consensus       200 ---~~~~~~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~d~Gg~lv~~-~~gr~tlIGv~~~~~~  256 (282)
T PF03761_consen  200 ---NSTGKLKHRKLKITNCTK-------------------CAYSICTKQYSCKGDRGGPLVKN-INGRWTLIGVGASGNY  256 (282)
T ss_pred             ---CCCCeEEEEEEEEEEeec-------------------cceeEecccccCCCCccCeEEEE-ECCCEEEEEEEccCCC
Confidence               113334455555443221                   22112224578999999999988 6899999999997753


Q ss_pred             -ccCCCCCceeeeccccccccccc
Q psy15052        348 -CAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       348 -C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                       |..  ....|.+|+.|.+=|=+.
T Consensus       257 ~~~~--~~~~f~~v~~~~~~IC~l  278 (282)
T PF03761_consen  257 ECNK--NNSYFFNVSWYQDEICEL  278 (282)
T ss_pred             cccc--cccEEEEHHHhhhhhccc
Confidence             321  267888998887755443

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.48  E-value=6.2e-13  Score=117.51  Aligned_cols=116  Identities=14%  Similarity=0.088  Sum_probs=91.1

Q ss_pred             CCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCC
Q psy15052        142 NTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF  219 (422)
Q Consensus       142 ~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~  219 (422)
                      +...|||.|.|+..+...|+|+||.+.|||++..|+.+.+.  .-+.|.+|.......-+....|.++|..+..-|    
T Consensus        12 e~y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~----   87 (267)
T PF09342_consen   12 EDYHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP----   87 (267)
T ss_pred             ccccCcceeeEEEcCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc----
Confidence            35679999999999888999999999999999999987444  457788887664332233336888888776544    


Q ss_pred             CCCCCceEEEEECCCcccCCCeeeeecCCCC-CCCCCCeEEEEEec
Q psy15052        220 FTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWG  264 (422)
Q Consensus       220 ~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-~~~~~~~~~v~GwG  264 (422)
                         +.+++||.|++|+.|+.+|+|..||... +......|..+|-.
T Consensus        88 ---~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d  130 (267)
T PF09342_consen   88 ---ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHD  130 (267)
T ss_pred             ---ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEcc
Confidence               3789999999999999999999999743 33445689999854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=99.04  E-value=1.6e-09  Score=98.40  Aligned_cols=199  Identities=17%  Similarity=0.145  Sum_probs=112.1

Q ss_pred             CCCCCcCeEEEEEe--cCCCC-ceEEEccCCEEeecccCcCCCCCc--eEEEEE-eeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        141 KNTTQRPYVKPLKE--SLGRP-VNVYSNNEKVDDFSTESVNSLLTS--QIKIRV-GEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       141 a~~~~~Pw~v~i~~--~~~~~-C~GtLIs~~~VLTAAhCv~~~~~~--~~~V~l-G~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .+..+|||-+-...  ..+++ |+++||+++.||||+||+......  ++.+.. |..     .+..+...+.-.+..+.
T Consensus        44 ~dt~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~~~~~~~p~g~~-----~~~~~~~~~~~~~~~~~  118 (251)
T COG3591          44 TDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVN-----SDGGPFYGITKIEIRVY  118 (251)
T ss_pred             ccCCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEecCCCChhhhhhcCCccc-----CCCCCCCceeeEEEEec
Confidence            46788999655543  33555 566999999999999999764322  222221 211     11111223333334334


Q ss_pred             CC--CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        215 PK--YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       215 p~--y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                      |.  |.......|+..+.|+....+.+.+....++.......++...++||-....     ..+++-       +.|...
T Consensus       119 ~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk~-----~~~~~~-------e~t~~v  186 (251)
T COG3591         119 PGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKP-----NIGTMW-------ESTGKV  186 (251)
T ss_pred             CCceeccCCceeeccHHHhccCCCccccccccccccccccccCceeEEEeccCCCC-----cceeEe-------eeccee
Confidence            44  2334455677777777555555555555555555556677789999854321     111110       011111


Q ss_pred             HhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecc-cccccccccC
Q psy15052        293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS-KFVPWVLDTG  371 (422)
Q Consensus       293 ~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~-~y~~WI~~~i  371 (422)
                      .       .+....     .....+.+.|+||+|++....    +++||.+.+..-.......-.+|+. .+++||++.+
T Consensus       187 ~-------~~~~~~-----l~y~~dT~pG~SGSpv~~~~~----~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~  250 (251)
T COG3591         187 N-------SIKGNK-----LFYDADTLPGSSGSPVLISKD----EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNI  250 (251)
T ss_pred             E-------EEecce-----EEEEecccCCCCCCceEecCc----eEEEEEecCCCcccccccCcceEecHHHHHHHHHhh
Confidence            0       011111     122468899999999998733    7999999887633233334445554 4678888765


Q ss_pred             C
Q psy15052        372 D  372 (422)
Q Consensus       372 ~  372 (422)
                      +
T Consensus       251 ~  251 (251)
T COG3591         251 K  251 (251)
T ss_pred             C
Confidence            3

>KOG3627|consensus

Probab=98.49  E-value=1.1e-07  Score=88.96  Aligned_cols=51  Identities=47%  Similarity=1.094  Sum_probs=46.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.+.... +|+++|++|||.. |+....|+|||||++|.+||.+++.
T Consensus       204 GDSGGPLv~~~~~-~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~~~~  255 (256)
T KOG3627|consen  204 GDSGGPLVCEDNG-RWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKENIG  255 (256)
T ss_pred             CCCCCeEEEeeCC-cEEEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHHHhc
Confidence            4789999888755 9999999999998 9998899999999999999999873

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.20  E-value=1.2e-05  Score=81.05  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             CCCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        157 GRPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       157 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ...++|.+|+++ +|||++|.+.+  ...+.|.+..           ...+..+-+..++       ..||||||++.+ 
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~--~~~i~V~~~~-----------~~~~~a~vv~~d~-------~~DlAllkv~~~-  115 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDG--ADEITVTLSD-----------GREFKAKLVGKDP-------RTDIAVLKIDAK-  115 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCC--CCeEEEEeCC-----------CCEEEEEEEEecC-------CCCEEEEEecCC-
Confidence            346899999976 99999999986  4566666542           1233444333444       379999999864 


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEecc
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWGR  265 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG~  265 (422)
                         ..+.++.|........++.+++.|+..
T Consensus       116 ---~~~~~~~l~~~~~~~~G~~v~aiG~p~  142 (428)
T TIGR02037       116 ---KNLPVIKLGDSDKLRVGDWVLAIGNPF  142 (428)
T ss_pred             ---CCceEEEccCCCCCCCCCEEEEEECCC
Confidence               346677886666667899999999863

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.15  E-value=2.5e-05  Score=76.46  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=79.8

Q ss_pred             CceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCccc
Q psy15052        159 PVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF  237 (422)
Q Consensus       159 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~  237 (422)
                      ..+|.+|+++ +|||++|.+.+  ...+.|.+..           ...+..+-+..+|       ..||||||++.+-  
T Consensus        79 ~GSG~vi~~~G~IlTn~HVV~~--~~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvlkv~~~~--  136 (351)
T TIGR02038        79 LGSGVIMSKEGYILTNYHVIKK--ADQIVVALQD-----------GRKFEAELVGSDP-------LTDLAVLKIEGDN--  136 (351)
T ss_pred             eEEEEEEeCCeEEEecccEeCC--CCEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEEEecCCC--
Confidence            4789999876 99999999976  3456666532           1233444343444       4799999998632  


Q ss_pred             CCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCC
Q psy15052        238 APNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD  317 (422)
Q Consensus       238 s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~  317 (422)
                         +.++.|-.......|+.+++.|+....     ........+..+....    +...     -....+=.     +..
T Consensus       137 ---~~~~~l~~s~~~~~G~~V~aiG~P~~~-----~~s~t~GiIs~~~r~~----~~~~-----~~~~~iqt-----da~  194 (351)
T TIGR02038       137 ---LPTIPVNLDRPPHVGDVVLAIGNPYNL-----GQTITQGIISATGRNG----LSSV-----GRQNFIQT-----DAA  194 (351)
T ss_pred             ---CceEeccCcCccCCCCEEEEEeCCCCC-----CCcEEEEEEEeccCcc----cCCC-----CcceEEEE-----CCc
Confidence               334555444456779999999986321     1122222222222110    0000     00111111     234


Q ss_pred             CCcCCCCCCceeecCCCcEEEeeEEeecc
Q psy15052        318 SCQGDSGGPLQVKGKDGRYFLAGIISWGI  346 (422)
Q Consensus       318 ~C~GDSGgPLv~~~~~~~~~lvGV~S~g~  346 (422)
                      .-.|.|||||+-.  +|  .++||.+...
T Consensus       195 i~~GnSGGpl~n~--~G--~vIGI~~~~~  219 (351)
T TIGR02038       195 INAGNSGGALINT--NG--ELVGINTASF  219 (351)
T ss_pred             cCCCCCcceEECC--CC--eEEEEEeeee
Confidence            5578999999854  23  3999998643

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=98.13  E-value=1.8e-06  Score=78.85  Aligned_cols=49  Identities=55%  Similarity=1.118  Sum_probs=43.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      -++++||.+... ++|+|+||+|||..|.....|.+|+||++|.+||+++
T Consensus       184 gdsGgpl~~~~~-~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         184 GDSGGPLVCNDN-GRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             CCCCCcEEEEeC-CEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence            578999988764 8999999999999998767899999999999999875

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>PRK10898 serine endoprotease; Provisional

Probab=98.04  E-value=8.1e-05  Score=72.83  Aligned_cols=82  Identities=13%  Similarity=0.053  Sum_probs=54.5

Q ss_pred             CCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcc
Q psy15052        158 RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE  236 (422)
Q Consensus       158 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~  236 (422)
                      ..-+|.+|+++ +|||+||=+.+  ...+.|.+..           ...+..+-+..+|       .+||||||++..  
T Consensus        78 ~~GSGfvi~~~G~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvl~v~~~--  135 (353)
T PRK10898         78 TLGSGVIMDQRGYILTNKHVIND--ADQIIVALQD-----------GRVFEALLVGSDS-------LTDLAVLKINAT--  135 (353)
T ss_pred             ceeeEEEEeCCeEEEecccEeCC--CCEEEEEeCC-----------CCEEEEEEEEEcC-------CCCEEEEEEcCC--
Confidence            34789999876 99999999975  4567776532           1223343344444       389999999853  


Q ss_pred             cCCCeeeeecCCCCCCCCCCeEEEEEec
Q psy15052        237 FAPNIVPICLPGSDDLLIGENATVTGWG  264 (422)
Q Consensus       237 ~s~~v~PicLp~~~~~~~~~~~~v~GwG  264 (422)
                         ...++.|-.......|+.+++.|+.
T Consensus       136 ---~l~~~~l~~~~~~~~G~~V~aiG~P  160 (353)
T PRK10898        136 ---NLPVIPINPKRVPHIGDVVLAIGNP  160 (353)
T ss_pred             ---CCCeeeccCcCcCCCCCEEEEEeCC
Confidence               1234445443445679999999975

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=6.5e-06  Score=77.34  Aligned_cols=50  Identities=40%  Similarity=0.890  Sum_probs=44.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++|+.-+. ...+.+.|++|||.+ |+.+..|+|||+|+.|.+||.++|
T Consensus       228 GDSGGPi~~~g-~~G~vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~  278 (413)
T COG5640         228 GDSGGPIFHKG-EEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMT  278 (413)
T ss_pred             CCCCCceEEeC-CCccEEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHh
Confidence            46889997776 456789999999988 999999999999999999999875

>PRK10139 serine endoprotease; Provisional

Probab=97.86  E-value=9.6e-05  Score=74.72  Aligned_cols=141  Identities=18%  Similarity=0.150  Sum_probs=82.7

Q ss_pred             CCceEEEccC--CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        158 RPVNVYSNNE--KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       158 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ...+|.+|++  -+|||++|.+.+  ...+.|.+..           ...+..+-+-..|       ..||||||++.+-
T Consensus        90 ~~GSG~ii~~~~g~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vvg~D~-------~~DlAvlkv~~~~  149 (455)
T PRK10139         90 GLGSGVIIDAAKGYVLTNNHVINQ--AQKISIQLND-----------GREFDAKLIGSDD-------QSDIALLQIQNPS  149 (455)
T ss_pred             ceEEEEEEECCCCEEEeChHHhCC--CCEEEEEECC-----------CCEEEEEEEEEcC-------CCCEEEEEecCCC
Confidence            4679999974  699999999986  4577777632           1233444444444       4799999998542


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCC
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG  315 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~  315 (422)
                          ...++.|........|+.+++.|+-..   .  ........+.-+.+..    ... .    -....+=+     +
T Consensus       150 ----~l~~~~lg~s~~~~~G~~V~aiG~P~g---~--~~tvt~GivS~~~r~~----~~~-~----~~~~~iqt-----d  206 (455)
T PRK10139        150 ----KLTQIAIADSDKLRVGDFAVAVGNPFG---L--GQTATSGIISALGRSG----LNL-E----GLENFIQT-----D  206 (455)
T ss_pred             ----CCceeEecCccccCCCCEEEEEecCCC---C--CCceEEEEEccccccc----cCC-C----CcceEEEE-----C
Confidence                345677765555678999999997421   1  1112222222221110    000 0    00112222     2


Q ss_pred             CCCCcCCCCCCceeecCCCcEEEeeEEeec
Q psy15052        316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWG  345 (422)
Q Consensus       316 ~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g  345 (422)
                      ...-+|.|||||+-.  +|  .++||.+..
T Consensus       207 a~in~GnSGGpl~n~--~G--~vIGi~~~~  232 (455)
T PRK10139        207 ASINRGNSGGALLNL--NG--ELIGINTAI  232 (455)
T ss_pred             CccCCCCCcceEECC--CC--eEEEEEEEE
Confidence            345579999999864  22  299999874

>PRK10942 serine endoprotease; Provisional

Probab=97.71  E-value=0.00031  Score=71.40  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             CCceEEEccC--CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        158 RPVNVYSNNE--KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       158 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ...+|.+|+.  -+|||++|.+.+  ...+.|.+...           ..+..+-+..+|       ..||||||++.+-
T Consensus       111 ~~GSG~ii~~~~G~IlTn~HVv~~--a~~i~V~~~dg-----------~~~~a~vv~~D~-------~~DlAvlki~~~~  170 (473)
T PRK10942        111 ALGSGVIIDADKGYVVTNNHVVDN--ATKIKVQLSDG-----------RKFDAKVVGKDP-------RSDIALIQLQNPK  170 (473)
T ss_pred             ceEEEEEEECCCCEEEeChhhcCC--CCEEEEEECCC-----------CEEEEEEEEecC-------CCCEEEEEecCCC
Confidence            3579999985  599999999986  45677776421           233343333444       4799999997432


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEec
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWG  264 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG  264 (422)
                          ...++.|-.......|+.+++.|+-
T Consensus       171 ----~l~~~~lg~s~~l~~G~~V~aiG~P  195 (473)
T PRK10942        171 ----NLTAIKMADSDALRVGDYTVAIGNP  195 (473)
T ss_pred             ----CCceeEecCccccCCCCEEEEEcCC
Confidence                2345666555556779999998864

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=97.66  E-value=4.1e-05  Score=69.80  Aligned_cols=45  Identities=53%  Similarity=1.163  Sum_probs=41.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHH
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  417 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi  417 (422)
                      .++++|+.+..+  +|+|+|++|||..|...+.|.+|+||++|.+||
T Consensus       185 gdsG~pl~~~~~--~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      185 GDSGGPLVCNDG--RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             CCCCCeeEEECC--CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            478999988765  999999999999998777899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=97.53  E-value=0.00019  Score=58.24  Aligned_cols=21  Identities=5%  Similarity=-0.178  Sum_probs=19.1

Q ss_pred             ceEEEccCC-EEeecccCcCCC
Q psy15052        160 VNVYSNNEK-VDDFSTESVNSL  180 (422)
Q Consensus       160 C~GtLIs~~-~VLTAAhCv~~~  180 (422)
                      |+|.+|+++ +|||||||+...
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~   22 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDW   22 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCC
T ss_pred             CEEEEEcCCceEEEchhheecc
Confidence            689999999 999999999864

...

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.48  E-value=8.8e-05  Score=66.97  Aligned_cols=44  Identities=48%  Similarity=1.066  Sum_probs=40.1

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHH
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  417 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi  417 (422)
                      ..++|+|+.+...    +|+||+|++..|...+.|.||+||+.|++||
T Consensus       177 ~g~sG~pl~~~~~----~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  177 QGDSGGPLICNNN----YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TTTTTSEEEETTE----EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             cccccccccccee----eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence            4678999988775    8999999999999988899999999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.84  E-value=0.037  Score=59.12  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=39.0

Q ss_pred             EEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCe
Q psy15052        162 VYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI  241 (422)
Q Consensus       162 GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v  241 (422)
                      .|||+|++|+|++|=...    .-.|.+|....         ..+.+.+--.|+.       .|+.+-||++=|.   -+
T Consensus        69 aTLigpqYiVSV~HN~~g----y~~v~FG~~g~---------~~Y~iV~RNn~~~-------~Df~~pRLnK~VT---Ev  125 (769)
T PF02395_consen   69 ATLIGPQYIVSVKHNGKG----YNSVSFGNEGQ---------NTYKIVDRNNYPS-------GDFHMPRLNKFVT---EV  125 (769)
T ss_dssp             -EEEETTEEEBETTG-TS----CCEECESCSST---------CEEEEEEEEBETT-------STEBEEEESS------SS
T ss_pred             EEEecCCeEEEEEccCCC----cCceeecccCC---------ceEEEEEccCCCC-------cccceeecCceEE---EE
Confidence            799999999999997633    23456665332         3456666656654       6999999998664   46


Q ss_pred             eeeecCCC
Q psy15052        242 VPICLPGS  249 (422)
Q Consensus       242 ~PicLp~~  249 (422)
                      .|+-....
T Consensus       126 aP~~~t~~  133 (769)
T PF02395_consen  126 APAEMTTA  133 (769)
T ss_dssp             ----BBSS
T ss_pred             eccccccc
Confidence            67666443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>smart00680 CLIP Clip or disulphide knot domain

Probab=87.77  E-value=0.26  Score=33.43  Aligned_cols=38  Identities=18%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             eee-CCceeeeeeeeeecc-----CCC-------ceecccc-CCeEEEEecC
Q psy15052         29 CSV-NSVEGRCMFVWECIN-----TDG-------HHLGMCV-DTFMFGSCCS   66 (422)
Q Consensus        29 C~~-~~~~g~C~~~~~C~~-----~~g-------~~~~~C~-~~~~~~~CC~   66 (422)
                      |.+ ++..|.|+.+.+|+.     ...       .....|+ ++.-..||||
T Consensus         1 C~tp~~~~G~Cv~~~~C~~~~~~l~~~~~~~~~~l~~~~Cg~~~~~~~vCCp   52 (52)
T smart00680        1 CRTPDGERGTCVPISDCPSLLSLLKSDPPEDLNFLRKSQCGFGNREPLVCCP   52 (52)
T ss_pred             CcCCCCCcEEeEEHHhChHHHHHHccCCHHHHHHHHHccCCCCCCCEeeeCc
Confidence            677 789999999999983     221       1234895 3334558996

Present in horseshoe crab proclotting enzyme N-terminal domain, Drosophila Easter and silkworm prophenoloxidase-activating enzyme.

>PF12032 CLIP: Regulatory CLIP domain of proteinases; InterPro: IPR022700 CLIP is a regulatory domain which controls the proteinase action of various proteins of the trypsin family, e

Probab=86.64  E-value=0.12  Score=35.55  Aligned_cols=17  Identities=35%  Similarity=0.902  Sum_probs=15.3

Q ss_pred             eee-CCceeeeeeeeeec
Q psy15052         29 CSV-NSVEGRCMFVWECI   45 (422)
Q Consensus        29 C~~-~~~~g~C~~~~~C~   45 (422)
                      |++ ++..|+|+.+.+|+
T Consensus         1 C~tp~g~~G~Cv~i~~C~   18 (54)
T PF12032_consen    1 CTTPNGEPGRCVPIRSCP   18 (54)
T ss_dssp             EE-TTSSEEEEEETTTBH
T ss_pred             CcCCCCCcEEEecHHHCH
Confidence            788 89999999999999

g. easter and pap2. The CLIP domain remains linked to the protease domain after cleavage of a conserved residue which retains the protein in zymogen form. It is named CLIP because it can be drawn in the shape of a paper clip. It has many disulphide bonds and highly conserved cysteine residues, and so it folds extensively [, ]. This entry represents the CLIP domain and is found in association with PF00089 from PFAM.; PDB: 2IKE_A 2XXL_A 2IKD_A.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=81.80  E-value=34  Score=33.30  Aligned_cols=145  Identities=18%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             CCceEEEcc-CCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcc
Q psy15052        158 RPVNVYSNN-EKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE  236 (422)
Q Consensus       158 ~~C~GtLIs-~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~  236 (422)
                      ...+|.+++ ..+|||-.|=+.+  ...+.|.+  .+         ...+..+-+-..+       ..|+|+||.+..-.
T Consensus        72 ~~gSg~i~~~~g~ivTn~hVi~~--a~~i~v~l--~d---------g~~~~a~~vg~d~-------~~dlavlki~~~~~  131 (347)
T COG0265          72 GLGSGFIISSDGYIVTNNHVIAG--AEEITVTL--AD---------GREVPAKLVGKDP-------ISDLAVLKIDGAGG  131 (347)
T ss_pred             ccccEEEEcCCeEEEecceecCC--cceEEEEe--CC---------CCEEEEEEEecCC-------ccCEEEEEeccCCC
Confidence            456788887 8899999998876  56677766  11         1233344333332       47999999986432


Q ss_pred             cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCC
Q psy15052        237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR  316 (422)
Q Consensus       237 ~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~  316 (422)
                          ...+.+........++...+.|-...     .....-..-+....+. +-....       ...+.+     ....
T Consensus       132 ----~~~~~~~~s~~l~vg~~v~aiGnp~g-----~~~tvt~Givs~~~r~-~v~~~~-------~~~~~I-----qtdA  189 (347)
T COG0265         132 ----LPVIALGDSDKLRVGDVVVAIGNPFG-----LGQTVTSGIVSALGRT-GVGSAG-------GYVNFI-----QTDA  189 (347)
T ss_pred             ----CceeeccCCCCcccCCEEEEecCCCC-----cccceeccEEeccccc-cccCcc-------cccchh-----hccc
Confidence                22334444444445666666663321     1111111222222221 100000       001111     1123


Q ss_pred             CCCcCCCCCCceeecCCCcEEEeeEEeecccc
Q psy15052        317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIGC  348 (422)
Q Consensus       317 ~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C  348 (422)
                      ...+|.|||||+..+.    .++||.+.....
T Consensus       190 ain~gnsGgpl~n~~g----~~iGint~~~~~  217 (347)
T COG0265         190 AINPGNSGGPLVNIDG----EVVGINTAIIAP  217 (347)
T ss_pred             ccCCCCCCCceEcCCC----cEEEEEEEEecC
Confidence            4678999999986422    299998876554

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.18  E-value=5.8  Score=34.57  Aligned_cols=67  Identities=16%  Similarity=0.027  Sum_probs=36.4

Q ss_pred             ceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCC
Q psy15052        160 VNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAP  239 (422)
Q Consensus       160 C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~  239 (422)
                      +.+.-|..+|.|--.|.-     ....+.++.            ..+++.+.+..  .+......||+|++|.+.-.|.+
T Consensus        27 ~l~~gi~~~~~lvp~H~~-----~~~~i~i~g------------~~~~~~d~~~l--v~~~~~~~Dl~~v~l~~~~kfrD   87 (172)
T PF00548_consen   27 MLALGIYDRYFLVPTHEE-----PEDTIYIDG------------VEYKVDDSVVL--VDRDGVDTDLTLVKLPRNPKFRD   87 (172)
T ss_dssp             EEEEEEEBTEEEEEGGGG-----GCSEEEETT------------EEEEEEEEEEE--EETTSSEEEEEEEEEESSS-B--
T ss_pred             EecceEeeeEEEEECcCC-----CcEEEEECC------------EEEEeeeeEEE--ecCCCcceeEEEEEccCCcccCc
Confidence            556679999999999921     222333321            12233332221  11122246999999998888876


Q ss_pred             Ceeeee
Q psy15052        240 NIVPIC  245 (422)
Q Consensus       240 ~v~Pic  245 (422)
                      ..+-++
T Consensus        88 Irk~~~   93 (172)
T PF00548_consen   88 IRKFFP   93 (172)
T ss_dssp             GGGGSB
T ss_pred             hhhhhc
Confidence            555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	422
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		9e-35
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-34
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		3e-34
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		9e-34
2any_A	241	Expression, Crystallization And The Three-Dimension		5e-31
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-30
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-30
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		2e-30
2anw_A	241	Expression, Crystallization And Three-Dimensional S		2e-30
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		5e-30
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		7e-30
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		1e-29
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		2e-29
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		2e-29
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		2e-29
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		2e-29
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		5e-29
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		6e-29
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		6e-29
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		6e-29
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		6e-29
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		7e-29
2bok_A	241	Factor Xa- Cation Length = 241		7e-29
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		7e-29
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		7e-29
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		7e-29
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		7e-29
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		8e-29
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		8e-29
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		8e-29
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		8e-29
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		8e-29
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		8e-29
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		8e-29
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		8e-29
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		8e-29
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		9e-29
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		9e-29
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		1e-28
2a31_A	223	Trypsin In Complex With Borate Length = 223		1e-28
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		1e-28
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-28
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		1e-28
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		1e-28
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		1e-28
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		1e-28
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		1e-28
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		1e-28
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		2e-28
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		2e-28
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		2e-28
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		2e-28
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		2e-28
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		2e-28
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		3e-28
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		4e-28
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		5e-28
1pfx_C	235	Porcine Factor Ixa Length = 235		5e-28
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		6e-28
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		8e-28
1kig_H	241	Bovine Factor Xa Length = 241		8e-28
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		8e-28
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		1e-27
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		1e-27
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		1e-27
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		1e-27
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		3e-27
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		3e-27
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		4e-27
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		5e-27
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		6e-27
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		7e-27
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		7e-27
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		8e-27
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		9e-27
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		1e-26
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-26
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		2e-26
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		2e-26
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-26
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		2e-26
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-26
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-26
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		3e-26
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		3e-26
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		3e-26
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-26
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		3e-26
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		5e-26
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		5e-26
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		6e-26
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		7e-26
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		7e-26
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		8e-26
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		9e-26
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		1e-25
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		1e-25
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-25
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		1e-25
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-25
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-25
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-25
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-25
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		2e-25
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		3e-25
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-25
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		3e-25
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		3e-25
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		3e-25
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		3e-25
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		3e-25
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-25
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		3e-25
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		3e-25
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		4e-25
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		4e-25
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		4e-25
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		5e-25
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		5e-25
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		5e-25
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		6e-25
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		7e-25
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		7e-25
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		7e-25
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-24
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		1e-24
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-24
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		1e-24
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-24
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		1e-24
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		2e-24
1lto_A	245	Human Alpha1-Tryptase Length = 245		2e-24
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		3e-24
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		3e-24
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-24
1aut_C	250	Human Activated Protein C Length = 250		4e-24
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		5e-24
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		5e-24
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		5e-24
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		5e-24
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		6e-24
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		6e-24
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		6e-24
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		7e-24
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		7e-24
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		9e-24
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		9e-24
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		1e-23
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		1e-23
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		1e-23
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		1e-23
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		1e-23
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		1e-23
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		1e-23
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		1e-23
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		2e-23
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		2e-23
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		3e-23
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		3e-23
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		4e-23
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		5e-23
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		6e-23
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		6e-23
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		6e-23
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		6e-23
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		6e-23
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		7e-23
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		7e-23
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		7e-23
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		7e-23
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		7e-23
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		7e-23
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		8e-23
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		8e-23
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		9e-23
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		9e-23
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		1e-22
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		1e-22
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		1e-22
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		1e-22
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		1e-22
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		1e-22
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		1e-22
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		1e-22
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-22
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		1e-22
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		1e-22
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-22
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-22
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		2e-22
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		2e-22
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		2e-22
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-22
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		2e-22
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		3e-22
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		5e-22
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		7e-22
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		8e-22
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		8e-22
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		9e-22
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		1e-21
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		1e-21
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		1e-21
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		1e-21
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		1e-21
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		1e-21
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		2e-21
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		2e-21
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		5e-21
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		7e-21
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		1e-20
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-20
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		1e-20
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		1e-20
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		1e-20
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-20
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		3e-20
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-20
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-20
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		6e-20
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		7e-20
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		1e-19
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		1e-19
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		2e-19
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-19
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		2e-19
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		3e-19
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		3e-19
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		4e-19
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		4e-19
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		4e-19
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		5e-19
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		5e-19
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		6e-19
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		7e-19
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		9e-19
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-18
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		1e-18
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		2e-18
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		5e-18
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		6e-18
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		6e-18
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		6e-18
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		6e-18
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		7e-18
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		7e-18
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		8e-18
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		8e-18
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		1e-17
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		2e-17
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-17
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		2e-17
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		3e-17
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		3e-17
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		3e-17
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		5e-17
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		5e-17
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		6e-17
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		7e-17
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		7e-17
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		7e-17
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		8e-17
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		8e-17
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		8e-17
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		9e-17
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		1e-16
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		2e-16
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		5e-16
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		8e-16
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		8e-16
1elt_A	236	Structure Of Native Pancreatic Elastase From North		9e-16
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		1e-15
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		1e-15
2xrc_A	565	Human Complement Factor I Length = 565		2e-15
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		2e-15
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		3e-15
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		3e-15
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		4e-15
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		4e-15
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		4e-15
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		1e-14
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		1e-14
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		1e-14
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		2e-14
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		2e-14
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		3e-14
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		3e-14
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		4e-14
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		4e-14
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		4e-14
1nn6_A	228	Human Pro-Chymase Length = 228		4e-14
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		5e-14
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		5e-14
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		7e-14
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		8e-14
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		1e-13
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		1e-13
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		2e-13
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		4e-13
4gso_A	232	Structure Of Jararacussin-I Length = 232		4e-13
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		9e-13
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		1e-12
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		1e-12
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		2e-12
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		3e-12
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		4e-06
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		3e-12
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		4e-12
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		5e-06
3fzz_A	227	Structure Of Grc Length = 227		1e-11
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		1e-10
1kyn_B	235	Cathepsin-G Length = 235		1e-10
1au8_A	224	Human Cathepsin G Length = 224		1e-10
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		5e-10
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		6e-10
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		7e-10
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		1e-09
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		1e-09
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		2e-09
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		4e-09
2rdl_A	226	Hamster Chymase 2 Length = 226		6e-09
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		6e-09
1dle_A	298	Factor B Serine Protease Domain Length = 298		3e-08
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		3e-08
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		3e-08
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		5e-08
2ok5_A	752	Human Complement Factor B Length = 752		5e-08
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		5e-08
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		5e-08
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		5e-08
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		7e-08
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		8e-08
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		8e-07
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		1e-06
2hnt_E	81	Crystallographic Structure Of Human Gamma-Thrombin		2e-06
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		7e-06
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		1e-05
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-05
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		3e-04
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		3e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		3e-04
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		3e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		3e-04
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		3e-04
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		3e-04
2i6q_A	517	Complement Component C2a Length = 517		3e-04
2odp_A	509	Complement Component C2a, The Catalytic Fragment Of		3e-04
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		9e-04

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score =  144 bits (363), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 7/186 (3%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +Q    +G +D S+   P   QER + + + HP +N FT++YD+AL+ LE P E++  + 
Sbjct: 56  TQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114
Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PICLP +  +   G+   VTGWG    GG+   +LQK  + +++   C ++  +      
Sbjct: 115 PICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ----- 169
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   MC GF +GG DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+ 
Sbjct: 170 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 229
Query: 362 KFVPWV 367
            F  W+
Sbjct: 230 LFRDWI 235

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 109/186 (58%), Gaps = 7/186 (3%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +Q    +G +D S+   P   QER + + + HP +N FT++YD+AL+ LE P E++  + 
Sbjct: 56  TQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114
Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PICLP +  +   G+   VTGWG    GG+   +LQK  + ++    C ++  +      
Sbjct: 115 PICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQ----- 169
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   MC GF +GG DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+ 
Sbjct: 170 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 229
Query: 362 KFVPWV 367
            F  W+
Sbjct: 230 LFRDWI 235

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S ++I  GE D S  E     Q   V K ++H  +++   + D++L++L   + F  N+ 
Sbjct: 56  SGLQIVAGELDMSVNEGSE--QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVA 113
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           PI LP       G+   VTGWG  SEGG+ P VLQKVTVP+VS+E CR+ +   G  E +
Sbjct: 114 PIALPEQGHTATGD-VIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY---GADEIL 169
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
            D  +CAG   GG+DSCQGDSGGPL      G  +LAGI+SWG GCA    PGV T +S 
Sbjct: 170 -DSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSY 227
Query: 363 FVPWV 367
            V W+
Sbjct: 228 HVDWI 232

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 109/186 (58%), Gaps = 7/186 (3%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +Q    +G +D S+   P   QER + + + HP +N FT++YD+AL+ LE P E++  + 
Sbjct: 56  TQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114
Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PI LP +  +   G+   VTGWG    GG+   +LQK  + +++   C ++  +      
Sbjct: 115 PISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ----- 169
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   MC GF +GG DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+ 
Sbjct: 170 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 229
Query: 362 KFVPWV 367
            F  W+
Sbjct: 230 LFRDWI 235

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 8/189 (4%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPIC 245
           +I  G  + S + +  P+ +  + + ++H  Y      +D+AL++L+ P+E+     PI 
Sbjct: 56  RIYSGILELSDITKDTPFSQ--IKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPIS 113
Query: 246 LPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
           LP   D   I  N  VTGWG   E G +  +LQKV +P+V+NE+C+    R   Y+ I+ 
Sbjct: 114 LPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK---RYQDYK-ITQ 169
Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             +CAG+  GG+D+C+GDSGGPL  K  +G + L GI SWG GCA    PGV T++++++
Sbjct: 170 RMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYM 228
Query: 365 PWVLDTGDS 373
            W+L+   S
Sbjct: 229 DWILEKTQS 237

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PICLP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
            +    +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RALRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PICLP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PICLP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 8/189 (4%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPIC 245
           +I  G  + S + +  P+ +  + + ++H  Y      +D+AL++L+ P+ +     PI 
Sbjct: 56  RIYSGILNLSDITKDTPFSQ--IKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPIS 113
Query: 246 LPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
           LP   D   I  N  VTGWG   E G +  +LQKV +P+V+NE+C+    R   Y+ I+ 
Sbjct: 114 LPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK---RYQDYK-ITQ 169
Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             +CAG+  GG+D+C+GDSGGPL  K  +G + L GI SWG GCA    PGV T++++++
Sbjct: 170 RMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYM 228
Query: 365 PWVLDTGDS 373
            W+L+   S
Sbjct: 229 DWILEKTQS 237

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +  +  PICLP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 8/186 (4%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           +++  G  + S+++E   +   GV + ++H +Y      YD+AL++LET V +  +  PI
Sbjct: 442 LRVYSGILNQSEIKEDTSF--FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPI 499
Query: 245 CLPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
           CLP   D  +I  +  VTGWG       +   LQK  +P+V+NE+C+  +    R   I+
Sbjct: 500 CLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKIT 555
Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKF 363
              +CAG+  GG+D+C+GDSGGPL  K  +  + L GI SWG GCA+   PGV T + ++
Sbjct: 556 HKMICAGYREGGKDACKGDSGGPLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEY 614
Query: 364 VPWVLD 369
           V W+L+
Sbjct: 615 VDWILE 620

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PI LP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PI LP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +A +  PI LP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 44  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++SN  C+S +   G+   
Sbjct: 102 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSY--PGQ--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVNWIQQT 219

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPY 203
           +P   P +  L   V+ +     V++    +    + + +KI V  GE++  + E  +  
Sbjct: 8   KPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETE--HTE 65
Query: 204 QERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAPNIVPICLPG---SDDLLIGENA 258
           Q+R V++ + H  YN    TY +D+AL+ L+ P+     + PIC+     ++  L   + 
Sbjct: 66  QKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            V+GWGR+   G    VLQ + VP+V    C    LR+ ++   +++F CAGF  GGRDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATC----LRSTKFTITNNMF-CAGFHEGGRDS 180
Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGDSGGP  V   +G  FL GIISWG  CA     G+ T++S++V W+
Sbjct: 181 CQGDSGGP-HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +  +  PI LP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +  +  PI LP   D  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 64  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 121
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 122 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 178
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 179 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 233
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 234 TKVTAFLKWI 243

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 44  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++S+  C+S +   G+   
Sbjct: 102 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQ--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVNWIQQT 219

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 50  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 107
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 108 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 162
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 163 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 216
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 217 NYVSWIKQT 225

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPY 203
           +P   P +  L   V+ +     V++    +    + + +KI V  GE++  + E  +  
Sbjct: 8   KPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETE--HTE 65
Query: 204 QERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAPNIVPICLPG---SDDLLIGENA 258
           Q+R V++ + H  +N    TY +D+AL+ L+ P+     + PIC+     ++  L   + 
Sbjct: 66  QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            V+GWGR+   G    VLQ + VP+V    C    LR+ ++   +++F CAGF  GGRDS
Sbjct: 126 YVSGWGRVFHKGRAALVLQYLRVPLVDRATC----LRSTKFTITNNMF-CAGFHEGGRDS 180
Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGDSGGP  V   +G  FL GIISWG  CA     G+ T++S++V W+
Sbjct: 181 CQGDSGGP-HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 49  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 106
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 107 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 161
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 162 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 215
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 216 NYVSWIKQT 224

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score =  124 bits (312), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 44  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++S+  C+S +   G+   
Sbjct: 102 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAY--PGQ--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVNWIQQT 219

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score =  124 bits (311), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ + +  E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTAAEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+S   C+S +      + 
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 44  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++S+  C+S +   G+   
Sbjct: 102 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQ--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVNWIQQT 219

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 44  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++S+  C+S +   G+   
Sbjct: 102 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQ--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVNWIQQT 219

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 7/186 (3%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+ K  +G +  S L  P   + R + + +++P YN      D+A++ LE  V +   I 
Sbjct: 51  SKWKAVLGLHMASNLTSP-QIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQ 109
Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PICLP  + +   G   ++ GWG L   GS   VLQ+  VP++SNEKC+           
Sbjct: 110 PICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYN---- 165
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I++  +CAG++ GG DSCQGDSGGPL  + ++ R+ LAG+ S+G  CA  N PGV  R+ 
Sbjct: 166 ITENMVCAGYEAGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFGYQCALPNRPGVYARVP 224
Query: 362 KFVPWV 367
           +F  W+
Sbjct: 225 RFTEWI 230

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 58  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 115
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 116 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 170
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 171 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 224
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 225 NYVSWIKQT 233

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SVSLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCAGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 64  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 121
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 122 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 176
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 177 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 230
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 231 NYVSWIKQT 239

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 14/188 (7%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP +     G    ++GWG   S G   P  LQ +  P++S  KC + +   G+   I
Sbjct: 107 ASLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY--PGK---I 160
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           +    C GF  GG+DSCQGDSGGP+   G+     L G++SWG GCA+ N PGV T++  
Sbjct: 161 TSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGDGCAQKNKPGVYTKVYN 215
Query: 363 FVPWVLDT 370
           +V W+ +T
Sbjct: 216 YVKWIKNT 223

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++   LE    +      K + HP +N  T + D+ L++L +P      + 
Sbjct: 52  SRIQVRLGEHNIDVLEGNEQFIN--AAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVA 109
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    ++GWG   S G S P +LQ +  P++S+  C+S +        
Sbjct: 110 TVSLPRSC-AAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ----- 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG GCA+ N PGV T++ 
Sbjct: 164 ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVC 218
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 219 NYVNWIQQT 227

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPY 203
           +P   P +  L   V+ +     V++    +    + + +KI V  GE++  + E  +  
Sbjct: 8   KPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETE--HTE 65
Query: 204 QERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAPNIVPICLPG---SDDLLIGENA 258
           Q+R V++ + H  +N    TY +D+AL+ L+ P+     + PIC+     ++  L   + 
Sbjct: 66  QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            V+GWGR+   G    VLQ + VP+V    C    LR+ ++   +++F CAGF  GGRDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATC----LRSTKFTITNNMF-CAGFHEGGRDS 180
Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGDSGGP  V   +G  FL GIISWG  CA     G+ T++S++V W+
Sbjct: 181 CQGDSGGP-HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           + K+RVG+ +  + E      E  VV K  H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIK--HNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR--SMFLRAG 297
            CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+  S F+   
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFI--- 163
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGD+GGP   + KD  YF+ GI+SWG GCA     G+ 
Sbjct: 164 ----ITQNMFCAGYDTKQEDACQGDAGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIY 218
Query: 358 TRISKFVPWV 367
           T+++ F+ W+
Sbjct: 219 TKVTAFLKWI 228

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGR 265
           GV + ++H +Y      YD+AL++LET V +  +  PI LP   +  +I  +  VTGWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGY 134
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                 +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+D+C+GDSGG
Sbjct: 135 RKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGKDACKGDSGG 190
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLD 369
           PL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+
Sbjct: 191 PLSCKHNE-VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 233

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 64  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 121
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 122 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 176
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGD+GGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 177 TSNMF-CAGYLEGGKDSCQGDAGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 230
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 231 NYVSWIKQT 239

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGD GGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDXGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG   GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGXLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 6/163 (3%)
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWG 264
           R + + +++P YN    + D+A++ LE  V +   I PI LP  + +   G N ++ GWG
Sbjct: 73  RLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWG 132
Query: 265 RLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSG 324
            +   G+   +LQ+  VP++SNE+C+           I++  +CAG++ GG DSCQGDSG
Sbjct: 133 TVVYQGTTADILQEADVPLLSNERCQQQMPEYN----ITENMICAGYEEGGIDSCQGDSG 188
Query: 325 GPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GPL  + ++ R+FLAG+ S+G  CA  N PGV  R+S+F  W+
Sbjct: 189 GPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWI 230

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 15/229 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPY 203
           +P   P +  L   V+ +     V++    +    + + +KI V  GE++  + E  +  
Sbjct: 8   KPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETE--HTE 65
Query: 204 QERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAPNIVPICLPG---SDDLLIGENA 258
           Q+R V++ + H  YN     Y +D+AL+ L+ P+     + PIC+     ++  L   + 
Sbjct: 66  QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            V+GWGR+   G    VLQ + VP+V    C    LR+ ++   +++F CAGF  GGRDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATC----LRSTKFTIYNNMF-CAGFHEGGRDS 180
Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGDSGGP  V   +G  FL GIISWG  CA     G+ T++S++V W+
Sbjct: 181 CQGDSGGP-HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP Y+  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 15/229 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPY 203
           +P   P +  L   V+ +     V++    +    + + +KI V  GE++  + E  +  
Sbjct: 8   KPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETE--HTE 65
Query: 204 QERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAPNIVPICLPG---SDDLLIGENA 258
           Q+R V++ + H  YN     Y +D+AL+ L+ P+     + PIC+     ++  L   + 
Sbjct: 66  QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            V+GWGR+   G    VLQ + VP+V    C    LR+ ++   +++F CAGF  GGRDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATC----LRSTKFTIYNNMF-CAGFHEGGRDS 180
Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGD+GGP  V   +G  FL GIISWG  CA     G+ T++S++V W+
Sbjct: 181 CQGDAGGP-HVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 184 QIKIRVGEYDFSKLEEPYPY-QERGVVKKMVHPKYNFFT--YEYDLALVRLETPVEFAPN 240
           +I +  GEY+    EE  P  Q R V++ + H  YN     Y +D+AL+ L+ P+     
Sbjct: 48  KITVVAGEYN---TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSY 104
Query: 241 IVPICLPG---SDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
           + PIC+     ++  L   +  V+GWGR+   G    +LQ + VP+V    C    LR+ 
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATC----LRST 160
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
           ++   S++F CAGF  GG+DSCQGDSGGP  V   +G  FL GIISWG  CA     G+ 
Sbjct: 161 KFTIYSNMF-CAGFHEGGKDSCQGDSGGP-HVTEVEGTSFLTGIISWGEECAVKGKYGIY 218
Query: 358 TRISKFVPWVLD 369
           T++S++V W+ +
Sbjct: 219 TKVSRYVNWIKE 230

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN      D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 101/183 (55%), Gaps = 7/183 (3%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP- 247
           +GE+D S  E     Q R V + ++   Y   T  +D+AL+RL  PV    ++VP+CLP 
Sbjct: 56  LGEHDLS--EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 248 ---GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
                  L     + V+GWG+L + G+   VLQ + VP +  + C     + G    I++
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
              CAG+ +G +DSC+GDSGGP     + G ++L GI+SWG GCA     GV TR+S+++
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGIVSWGQGCATVGHFGVYTRVSQYI 232
Query: 365 PWV 367
            W+
Sbjct: 233 EWL 235

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 12/188 (6%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           +  +RVG+ +  + E      E  V   + H ++   TY++D+A++RL+TP+ F  N+ P
Sbjct: 49  RFTVRVGDRNTEQEEGNEMAHE--VEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAP 106
Query: 244 ICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
            CLP  D     L+  +   V+G+GR  E G L   L+ + VP V    C+     +  +
Sbjct: 107 ACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCK----LSSSF 162
Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR 359
               ++F CAG+D    D+CQGDSGGP   + KD  YF+ GI+SWG GCA     GV T+
Sbjct: 163 TITPNMF-CAGYDTQPEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKFGVYTK 220
Query: 360 ISKFVPWV 367
           +S F+ W+
Sbjct: 221 VSNFLKWI 228

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  TY  D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRETYNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 7/189 (3%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           IKIR GE+D    +E  PYQER + + ++H  +N  T   D+AL+ L+ P+  A NI  I
Sbjct: 191 IKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTI 250
Query: 245 CLPGSDDLLIGENATVTGWGRLSEGG--SLPPVLQKVTVPIVSNEKCRSMF--LRAGRYE 300
           CLP    +        +GWG+   G       +L+K+ +P V  +KC++     R G   
Sbjct: 251 CLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKF 310
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKG--KDGRYFLAGIISWGIGCAEANLPGVCT 358
            +   F+CAG +  G+D+C GD G PL         RY   GI++WGIGC + N+PGV  
Sbjct: 311 VLDQTFVCAGGEQ-GKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYA 369
Query: 359 RISKFVPWV 367
            ++ F  W+
Sbjct: 370 NVAHFRNWI 378

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 14/192 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++R+GE++ +  E    + +   VK ++HP YN    + D+ L++L  P      + 
Sbjct: 44  SRIQVRLGEHNIAVNEGTEQFIDS--VKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVS 101
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP S     G    V+GWG LS   S  P  L+ + +PI+S+  C S +      + 
Sbjct: 102 TVALP-SSCASSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAGF  GG+DSCQGDSGGP+   G+     L G++SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGFMEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGYGCAQRNKPGVYTKVC 210
Query: 362 KFVPWVLDTGDS 373
            +  W+  T  S
Sbjct: 211 NYRSWISSTMSS 222

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  TY  D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRETYNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C      A     I+D  +C GF  GG+D+CQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCE-----ASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  I LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATIALP-SSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDHKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 52  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 109
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+   ++  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 110 IKLSSPVKLNAHVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 168
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 169 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 218
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 219 CALPDNPGVYTKVCNYVDWIQDT 241

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSL 272
           HP Y     + D+AL++L  P+ F+  I PI LP +      G + TVTGWG ++   SL
Sbjct: 79  HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSL 138
Query: 273 --PPVLQKVTVPIVSNEKCRSMFLRAGRYE---FISDIFMCAGFDNGGRDSCQGDSGGPL 327
             P  LQ++ VP++S E C S++    + E   F+ +  +CAG+  GG+D+CQGDSGGPL
Sbjct: 139 LTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
                +G ++L GI+SWG  C   N PGV T  S +  W+
Sbjct: 199 SCP-VEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI 237

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSL 272
           HP Y     + D+AL++L  P+ F+  I PI LP +      G + TVTGWG ++   SL
Sbjct: 79  HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSL 138
Query: 273 --PPVLQKVTVPIVSNEKCRSMFLRAGRYE---FISDIFMCAGFDNGGRDSCQGDSGGPL 327
             P  LQ++ VP++S E C S++    + E   F+ +  +CAG+  GG+D+CQGDSGGPL
Sbjct: 139 LTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
                +G ++L GI+SWG  C   N PGV T  S +  W+
Sbjct: 199 SCP-VEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI 237

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score =  117 bits (294), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 38  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 95
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 96  IKLSSPVKLNARVATVALPSSC-APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 154
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 155 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 204
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 205 CALPDNPGVYTKVCNYVDWIQDT 227

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 40  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 97
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 98  IKLSSPVKLNARVATVALPSSC-APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 156
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 157 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 206
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 207 CALPDNPGVYTKVCNYVDWIQDT 229

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGD+GGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSL 272
           HP Y     + D+AL++L  P+ F+  I PI LP ++     G + TVTGWG ++   SL
Sbjct: 79  HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWGHVAPSVSL 138
Query: 273 --PPVLQKVTVPIVSNEKCRSMFLRAGRYE---FISDIFMCAGFDNGGRDSCQGDSGGPL 327
             P  LQ++ VP++S E C +++    + E   F+ +  +CAG+  GG+D+CQGDSGGPL
Sbjct: 139 LTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPL 198
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
                +G ++L GI+SWG  C   N PGV T  S +  W+
Sbjct: 199 SCP-VEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI 237

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 40  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 97
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 98  IKLSSPVKLNARVATVALPSSC-APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 156
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGD+GGP+   G+     L GI+SWG G
Sbjct: 157 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE-----LQGIVSWGYG 206
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 207 CALPDNPGVYTKVCNYVDWIQDT 229

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+ WG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVEWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   ++ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFVNAAKIIK--HPNFDRKTLNNNIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+ WG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVKWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   ++ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNNIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGD GGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDCGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 7/183 (3%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP- 247
           +GE+D S  E     Q R V + ++   Y   T  +D+AL+RL  PV    ++VP+CLP 
Sbjct: 56  LGEHDLS--EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 248 ---GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
                  L     + V+GWG+L + G+    L  + VP +  + C     + G    I++
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
              CAG+ +G +DSC+GDSGGP     + G ++L GI+SWG GCA     GV TR+S+++
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHYR-GTWYLTGIVSWGQGCATVGHFGVYTRVSQYI 232
Query: 365 PWV 367
            W+
Sbjct: 233 EWL 235

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 38  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 95
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +L+ +  P++   
Sbjct: 96  IKLSSPVKLNARVATVALPSSC-APAGTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQA 154
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQGDSGGP+   G+     L GI+SWG G
Sbjct: 155 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE-----LQGIVSWGYG 204
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 205 CALPDNPGVYTKVCNYVDWIQDT 227

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 38  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 95
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 96  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 154
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+DSCQG+SGGP+   G+     L GI+SWG G
Sbjct: 155 DCEASY--PGK---ITDNMVCVGFLEGGKDSCQGNSGGPVVCNGE-----LQGIVSWGYG 204
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 205 CALPDNPGVYTKVCNYVDWIQDT 227

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+S+  C+S   R      
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSR-----I 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+    CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+ SCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + PGV T++  +V W+ DT
Sbjct: 197 CALPDNPGVYTKVCNYVDWIQDT 219

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+S     S    A  Y  
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSYII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++I++R+GE++   LE    +     VK + HPKYN  T + D+ L++L +P      + 
Sbjct: 44  TRIQVRLGEHNIKVLEGNEQFIN--AVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVS 101
Query: 243 PICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG  LS G   P  L+ +  P+++  +C++ +   G+   
Sbjct: 102 TISLPTAPPAA-GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGK--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I++   C GF  GG+DSCQ DSGGP+   G+     L G++SWG GCA  N PGV T++ 
Sbjct: 156 ITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQ-----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 362 KFVPWVLDT 370
            +V W+ DT
Sbjct: 211 NYVDWIKDT 219

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGEGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSCASA-GTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG+ T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGIYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG+ T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGIYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 12/190 (6%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           + + VGE+D S        Q   V    V+  Y+  T E D+++++    + F  N+ PI
Sbjct: 53  VSLVVGEHDSSAASTVR--QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPI 110
Query: 245 CLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
           C P   +  +   +  +GWG ++ GG   P VL+ VT+ I +N  C +++      + I 
Sbjct: 111 CAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS----DTIY 166
Query: 304 DIFMCAGFDNGG---RDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           D  +CA  DN G   RDSCQGDSGGPL VK   G + L GI+SWGIGCA +  PGV +R+
Sbjct: 167 DDMICA-TDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRV 224
Query: 361 SKFVPWVLDT 370
                W+ DT
Sbjct: 225 GFHAGWITDT 234

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG+ T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGEGCAQKNKPGIYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGD+GGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+          ++     
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPIL-----SDSSCKSASSAI 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+    CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGD+GGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSWGEGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 23/202 (11%)
Query: 176 SVNSLLTSQIKIRVGEYDFSKLEEPYPYQER--GVVKKMVHPKYNFFTYEYDLALVRLET 233
            V  L T ++++R         E+   YQ++   V + +VHP++       D+AL+ LE 
Sbjct: 49  DVKDLATLRVQLR---------EQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEE 99
Query: 234 PVEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPV--LQKVTVPIVSNEKCR 290
           PV  +  +  + LP  S+    G    VTGWG +     LPP   L++V VPI+ N  C 
Sbjct: 100 PVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICD 159
Query: 291 SMFLRAGRY-----EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           + +   G Y       I D  +CAG  N  RDSCQGDSGGPL  K  +G +  AG++SWG
Sbjct: 160 AKY-HLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWG 215
Query: 346 IGCAEANLPGVCTRISKFVPWV 367
            GCA+ N PG+ TR++ ++ W+
Sbjct: 216 EGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSWII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGEGCAQKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 17/189 (8%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG + G  DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++ 
Sbjct: 157 TSNMF-CAGLEGG--DSCQGDSGGPVVCSGK-----LQGIVSWGSGCAK-NKPGVYTKVC 207
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 208 NYVSWIKQT 216

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++I++R+GE++   LE    +      K + HPKYN  T + D+ L++L +P      + 
Sbjct: 44  TRIQVRLGEHNIKVLEGNEQFIN--AAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVS 101
Query: 243 PICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG  LS G   P  L+ +  P+++  +C++ +   G+   
Sbjct: 102 TISLPTAPPAA-GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGK--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I++   C GF  GG+DSCQ D+GGP+   G+     L G++SWG GCA  N PGV T++ 
Sbjct: 156 ITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ-----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 362 KFVPWVLDT 370
            +V W+ DT
Sbjct: 211 NYVDWIKDT 219

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++I++R+GE++   LE    +      K + HPKYN  T + D+ L++L +P      + 
Sbjct: 44  TRIQVRLGEHNIKVLEGNEQFIN--AAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVS 101
Query: 243 PICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG  LS G   P  L+ +  P+++  +C++ +   G+   
Sbjct: 102 TISLPTAPPAA-GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGK--- 155
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I++   C GF  GG+DSCQ D+GGP+   G+     L G++SWG GCA  N PGV T++ 
Sbjct: 156 ITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ-----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 362 KFVPWVLDT 370
            +V W+ DT
Sbjct: 211 NYVDWIKDT 219

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPI 283
           D+ALV L +P+     I P+CLP +   L+ G+  TVTGWG     G    VLQ+  VPI
Sbjct: 95  DIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI 154
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK---GKDGRYFLAG 340
           +SN+ C        +   I     CAG+  GG D+CQGDSGGP   +    +  R+ L G
Sbjct: 155 ISNDVCNGADFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCG 211
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           I+SWG GCA A  PGV T++S F  W+   
Sbjct: 212 IVSWGTGCALAQKPGVYTKVSDFREWIFQA 241

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 14/196 (7%)
Query: 176 SVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV 235
           S      S+I++R+GE++   LE    +      K + HP+Y+  T   D+ L++L +  
Sbjct: 37  SAGHCYKSRIQVRLGEHNIEVLEGNEQFIN--AAKIIRHPQYDRKTLNNDIMLIKLSSRA 94
Query: 236 EFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFL 294
                +  I LP +     G    ++GWG   S G   P  LQ +  P++S  KC + + 
Sbjct: 95  VINARVSTISLPTAPPA-TGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASY- 152
Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
             G+   I+    C GF  GG+DSCQGDSGGP+   G+     L G++SWG GCA+ N P
Sbjct: 153 -PGK---ITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGDGCAQKNKP 203
Query: 355 GVCTRISKFVPWVLDT 370
           GV T++  +V W+ +T
Sbjct: 204 GVYTKVYNYVKWIKNT 219

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 169 VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLAL 228
           ++D    S      S+I++R+GE++ + LE    +     + K  HP ++  T   D+ L
Sbjct: 30  INDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIK--HPNFDRKTLNNDIML 87
Query: 229 VRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNE 287
           ++L +PV+    +  + LP S     G    ++GWG  LS G + P +LQ +  P++   
Sbjct: 88  IKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQA 146
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
            C + +   G+   I+D  +C GF  GG+ SCQGDSGGP+   G+     L GI+SWG G
Sbjct: 147 DCEASY--PGK---ITDNMVCVGFLEGGKGSCQGDSGGPVVCNGE-----LQGIVSWGYG 196
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA  + P V T++  +V W+ DT
Sbjct: 197 CALPDNPDVYTKVCNYVDWIQDT 219

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPI 283
           D+ALV L +P+     I P+CLP +   L+ G+  TVTGWG     G    VLQ+  VPI
Sbjct: 212 DIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI 271
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK---GKDGRYFLAG 340
           +SN+ C        +   I     CAG+  GG D+CQGDSGGP   +    +  R+ L G
Sbjct: 272 ISNDVCNGADFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCG 328
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           I+SWG GCA A  PGV T++S F  W+   
Sbjct: 329 IVSWGTGCALAQKPGVYTKVSDFREWIFQA 358

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKLC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPI 283
           D+ALV L +P+     I P+CLP +   L+ G+  TVTGWG     G    VLQ+  VPI
Sbjct: 212 DIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI 271
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK---GKDGRYFLAG 340
           +SN+ C        +   I     CAG+  GG D+CQGDSGGP   +    +  R+ L G
Sbjct: 272 ISNDVCNGADFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCG 328
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           I+SWG GCA A  PGV T++S F  W+   
Sbjct: 329 IVSWGTGCALAQKPGVYTKVSDFREWIFQA 358

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 14/196 (7%)
Query: 176 SVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV 235
           S      S+I++R+GE++   LE    +      K + HP+Y+  T   D+ L++L +  
Sbjct: 37  SAGHCYKSRIQVRLGEHNIEVLEGNEQFIN--AAKIIRHPQYDRKTLNNDIMLIKLSSRA 94
Query: 236 EFAPNIVPICLPGSDDLLIGENATVTGWGR-LSEGGSLPPVLQKVTVPIVSNEKCRSMFL 294
               ++  I LP +     G    ++GWG   S G   P  LQ +  P++S  KC + + 
Sbjct: 95  VINAHVSTISLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY- 152
Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
             G+   I+    C GF  GG+DSCQGD+GGP+   G+     L G++SWG GCA+ N P
Sbjct: 153 -PGK---ITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQ-----LQGVVSWGDGCAQKNKP 203
Query: 355 GVCTRISKFVPWVLDT 370
           GV T++  +V W+ +T
Sbjct: 204 GVYTKVYNYVKWIKNT 219

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           +PY +P + SL    + +     V++    S      S++++R+GE++    E    +  
Sbjct: 8   KPYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADSNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFIS--ASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S+  C+S +      + 
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG----QI 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F   G +  G DSCQGDSGGP+   GK     L GI+SWG GC   N PGV T++ 
Sbjct: 157 TSNMFCAYGLEGKG-DSCQGDSGGPVVCSGK-----LQGIVSWGSGCQAKNKPGVYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           +PY +P + SL    + +     V++    S      S++++R+GE++    E    +  
Sbjct: 28  KPYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 86
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 87  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGN 143
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 144 TMSSTADSNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 198
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 199 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 238

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
           +T+   +  GE+D     E    Q+  + K   + KYN  T   D+ L++L T   F+  
Sbjct: 45  VTTSDVVVAGEFDQGSSSEKI--QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT 102
Query: 241 IVPICLP-GSDDLLIGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
           +  +CLP  SDD   G     TGWG       + P  LQ+ ++P++SN  C+  +     
Sbjct: 103 VSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-- 160
Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCT 358
              I D  +CAG    G  SC GDSGGPL  K K+G + L GI+SWG      + PGV  
Sbjct: 161 ---IKDAMICAGAS--GVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYA 214
Query: 359 RISKFVPWVLDT 370
           R++  V WV  T
Sbjct: 215 RVTALVNWVQQT 226

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGD+GGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSWGSGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 23/202 (11%)
Query: 176 SVNSLLTSQIKIRVGEYDFSKLEEPYPYQER--GVVKKMVHPKYNFFTYEYDLALVRLET 233
            V  L T ++++R         E+   YQ++   V + +VHP++       D+AL+ LE 
Sbjct: 49  DVKDLATLRVQLR---------EQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEE 99
Query: 234 PVEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPV--LQKVTVPIVSNEKCR 290
           PV  +  +  + LP  S+    G    VTGWG +     LPP   L++V VPI+ N  C 
Sbjct: 100 PVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICD 159
Query: 291 SMFLRAGRY-----EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           + +   G Y       I D  +CAG  N  RDSC+GDSGGPL  K  +G +  AG++SWG
Sbjct: 160 AKY-HLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCK-VNGTWLQAGVVSWG 215
Query: 346 IGCAEANLPGVCTRISKFVPWV 367
            GCA+ N PG+ TR++ ++ W+
Sbjct: 216 EGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
           +T+   +  GE+D     E    Q+  + K   + KYN  T   D+ L++L T   F+  
Sbjct: 60  VTTSDVVVAGEFDQGSSSEKI--QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT 117
Query: 241 IVPICLP-GSDDLLIGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
           +  +CLP  SDD   G     TGWG       + P  LQ+ ++P++SN  C+  +     
Sbjct: 118 VSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-- 175
Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCT 358
              I D  +CAG    G  SC GDSGGPL  K K+G + L GI+SWG      + PGV  
Sbjct: 176 ---IKDAMICAGAS--GVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYA 229
Query: 359 RISKFVPWVLDT 370
           R++  V WV  T
Sbjct: 230 RVTALVNWVQQT 241

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F CAG+  GG+D+CQGD+GGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CAGYLEGGKDACQGDAGGPVVCSGK-----LQGIVSWGEGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 110/194 (56%), Gaps = 16/194 (8%)
Query: 186 KIRVGEYDFSKLEEPY-------PYQ--ERGVVKKMVHPKYNFFTYE--YDLALVRLETP 234
           K+R+GE++ +   + Y       P +  + G+ + + HP Y   + +  +D+AL+RL   
Sbjct: 83  KVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQ 142
Query: 235 VEFAPNIVPICLPG-SDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
           VEF   I P+CLP  ++++ +G+  TV GWGR +E G    + QK+ VP+V  E+C   F
Sbjct: 143 VEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR-TETGQYSTIKQKLAVPVVHAEQCAKTF 201
Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL 353
             AG    +    +CAG +   +DSC GDSGGPL  +  + ++FL G++S+G  C     
Sbjct: 202 GAAGVR--VRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGW 258
Query: 354 PGVCTRISKFVPWV 367
           PG+ T++ K+  W+
Sbjct: 259 PGIYTKVGKYRDWI 272

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLXSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSCASA-GTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F C G+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CVGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGEGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGRL 266
           V + +VHP++       D+AL+ LE PV+ + ++  + LP  S+    G    VTGWG +
Sbjct: 74  VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 267 SEGGSLPPV--LQKVTVPIVSNEKCRSMFLRAGRY-----EFISDIFMCAGFDNGGRDSC 319
                LPP   L++V VPI+ N  C + +   G Y       + D  +CAG  N  RDSC
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDAKY-HLGAYTGDDVRIVRDDMLCAG--NTRRDSC 190
Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           QGDSGGPL  K  +G +  AG++SWG GCA+ N PG+ TR++ ++ W+
Sbjct: 191 QGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E    +      K +VHP YN  TY  D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISAS--KSIVHPSYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 243 PICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP S     G    ++GWG   S G S P VL+ +  PI+S     S    A  +  
Sbjct: 102 SISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS----DSSCKSASSFII 156
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S++F C G+  GG+D+CQGDSGGP+   GK     L GI+SWG GCA+ N PG  T++ 
Sbjct: 157 TSNMF-CVGYLEGGKDACQGDSGGPVVCSGK-----LQGIVSWGEGCAQKNKPGFYTKVC 210
Query: 362 KFVPWVLDT 370
            +V W+  T
Sbjct: 211 NYVSWIKQT 219

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGRL 266
           V + +VHP++       D+AL+ LE PV+ + ++  + LP  S+    G    VTGWG +
Sbjct: 74  VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 267 SEGGSLPPV--LQKVTVPIVSNEKCRSMFLRAGRY-----EFISDIFMCAGFDNGGRDSC 319
                LPP   L++V VPI+ N  C + +   G Y       + D  +CAG  N  RDSC
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDAKY-HLGAYTGDDVRIVRDDMLCAG--NTRRDSC 190
Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           QGDSGGPL  K  +G +  AG++SWG GCA+ N PG+ TR++ ++ W+
Sbjct: 191 QGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGRL 266
           V + +VHP++       D+AL+ LE PV+ + ++  + LP  S+    G    VTGWG +
Sbjct: 74  VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 267 SEGGSLPPV--LQKVTVPIVSNEKCRSMFLRAGRY-----EFISDIFMCAGFDNGGRDSC 319
                LPP   L++V VPI+ N  C + +   G Y       + D  +CAG  N  RDSC
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDAKY-HLGAYTGDDVRIVRDDMLCAG--NTRRDSC 190
Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           QGDSGGPL  K  +G +  AG++SWG GCA+ N PG+ TR++ ++ W+
Sbjct: 191 QGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           + Y +P + SL    + +     V++    S      S++++R+GE++    E    +  
Sbjct: 8   KAYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP-SSCAPAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADKNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           + Y +P + SL    + +     V++    S      S++ +R+GE++    E    +  
Sbjct: 8   KAYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVAVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP-SSCAPAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADGDKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 176 SVNSLLTSQIKIRVGEYDFSKLEEPYPYQER--GVVKKMVHPKYNFFTYEYDLALVRLET 233
            V  L T ++++R         E+   YQ++   V + +VHP++       D+AL+ LE 
Sbjct: 49  DVKDLATLRVQLR---------EQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEE 99
Query: 234 PVEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPV--LQKVTVPIVSNEKCR 290
           PV  +  +  + LP  S+    G    VTGWG +     LPP   L++V VPI+ N  C 
Sbjct: 100 PVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICD 159
Query: 291 SMFLRAGRY-----EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
           + +   G Y       I D  +CAG  N  RDSC+GDSGGPL  K  +G +  AG++SW 
Sbjct: 160 AKY-HLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCK-VNGTWLQAGVVSWD 215
Query: 346 IGCAEANLPGVCTRISKFVPWV 367
            GCA+ N PG+ TR++ ++ W+
Sbjct: 216 EGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           + Y +P + SL    + +     V++    S      S++++R+GE++    E    +  
Sbjct: 8   KAYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADSNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           + Y +P + SL    + +     V++    S      +++++R+GE++    E    +  
Sbjct: 8   KAYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKTRVEVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L  P      + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP-SSCAPAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADKNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTST 218

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           + ++ +R+GEYD  + E+     +  + +  VHP Y+  T + D+AL+ L  P   +  I
Sbjct: 47  SKKLLVRLGEYDLRRWEKWE--LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTI 104
Query: 242 VPICLPGS-----DDLLIGENATVTGWGRLSEGGSLPP-----VLQKVTVPIVSNEKCRS 291
           VPICLP S     +    G+   VTGWG  S            VL  + +P+V + +C  
Sbjct: 105 VPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSE 164
Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA 351
           +         +S+  +CAG     +D+C+GDSGGP+ V    G +FL G++SWG GC   
Sbjct: 165 VM-----SNMVSENMLCAGILGDRQDACEGDSGGPM-VASFHGTWFLVGLVSWGEGCGLL 218
Query: 352 NLPGVCTRISKFVPWV 367
           +  GV T++S+++ W+
Sbjct: 219 HNYGVYTKVSRYLDWI 234

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           + ++ +R+GEYD  + E+     +  + +  VHP Y+  T + D+AL+ L  P   +  I
Sbjct: 47  SKKLLVRLGEYDLRRWEKWE--LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTI 104
Query: 242 VPICLPGS-----DDLLIGENATVTGWGRLSEGGSLPP-----VLQKVTVPIVSNEKCRS 291
           VPICLP S     +    G+   VTGWG  S            VL  + +P+V + +C  
Sbjct: 105 VPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSE 164
Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA 351
           +         +S+  +CAG     +D+C+GDSGGP+ V    G +FL G++SWG GC   
Sbjct: 165 VM-----SNMVSENMLCAGILGDRQDACEGDSGGPM-VASFHGTWFLVGLVSWGEGCGLL 218
Query: 352 NLPGVCTRISKFVPWV 367
           +  GV T++S+++ W+
Sbjct: 219 HNYGVYTKVSRYLDWI 234

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S++++R+GE++    E    +     V +  HP Y+ +  + D+ L++L  P      + 
Sbjct: 44  SRVEVRLGEHNIKVTEGSEQFISSSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQ 101
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           P+ LP S     G   TV+GWG      +    LQ + +PI+S   C   +        I
Sbjct: 102 PVALPTSC-APAGTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCNDSYPG-----MI 155
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           ++   CAG+  GG+DSCQGDSGGP+   G+     L G++SWG GCAE   PGV  ++  
Sbjct: 156 TNAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCI 210
Query: 363 FVPWVLDT 370
           F  W+  T
Sbjct: 211 FSDWLTST 218

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 67  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 118
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 119 PACLPSPNYMVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 170
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGDSGGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 171 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 229
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 230 VRVSRFVTWI 239

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S++++R+GE++    E    +     V +  HP Y+ +  + D+ L++L  P      + 
Sbjct: 59  SRVEVRLGEHNIKVTEGSEQFISSSRVIR--HPNYSSYNIDNDIMLIKLSKPATLNTYVQ 116
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           P+ LP S     G   TV+GWG      +    LQ + +PI+S   C + +        I
Sbjct: 117 PVALPTSC-APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG-----MI 170
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           ++   CAG+  GG+DSCQGDSGGP+   G+     L G++SWG GCAE   PGV  ++  
Sbjct: 171 TNAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCI 225
Query: 363 FVPWVLDT 370
           F  W+  T
Sbjct: 226 FNDWLTST 233

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 111/209 (53%), Gaps = 19/209 (9%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR- 290
            F+  I P+CLP  +     L  G    VTGWG L E    P VLQ V +PIV    C+ 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKD 169
Query: 291 SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGI 346
           S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG 
Sbjct: 170 STRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 223
Query: 347 GCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           GC      G  T + +   W+    D  G
Sbjct: 224 GCDRDGKYGFYTHVFRLKKWIQKVIDQFG 252

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC     PG  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKPGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Query: 213 VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWGRLSEGGS 271
           VHP Y+      DLA+++L T +    NI    L  S  D + G +ATV GWG  SEGGS
Sbjct: 74  VHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Query: 272 LPPV-LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
             PV L KVTVPIVS   CR+ +        I++   CAG  +GG+DSCQGDSGGP+   
Sbjct: 132 STPVNLLKVTVPIVSRATCRAQY----GTSAITNQMFCAGVSSGGKDSCQGDSGGPI--- 184
Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             D    L G +SWG GCA  N  GV   +     ++
Sbjct: 185 -VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Query: 213 VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWGRLSEGGS 271
           VHP Y+      DLA+++L T +    NI    L  S  D + G +ATV GWG  SEGGS
Sbjct: 74  VHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Query: 272 LPPV-LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
             PV L KVTVPIVS   CR+ +        I++   CAG  +GG+DSCQGDSGGP+   
Sbjct: 132 STPVNLLKVTVPIVSRATCRAQY----GTSAITNQMFCAGVSSGGKDSCQGDSGGPI--- 184
Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             D    L G +SWG GCA  N  GV   +     ++
Sbjct: 185 -VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 71  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 122
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 123 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 174
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGDSGGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 175 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 233
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 234 VRVSRFVTWI 243

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 68  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 119
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 120 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 171
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGDSGGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 230
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 231 VRVSRFVTWI 240

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score =  107 bits (268), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 14/148 (9%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPI 283
           D+AL++L +P      ++P CLP  + ++       +TGWG  ++G     +L++  +P+
Sbjct: 646 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPV 704
Query: 284 VSNEKCRSMFLRAGRYEF----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLA 339
           + N+ C        RYEF    +    +CAG   GG DSCQGDSGGPL    KD +Y L 
Sbjct: 705 IENKVC-------NRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQ 756
Query: 340 GIISWGIGCAEANLPGVCTRISKFVPWV 367
           G+ SWG+GCA  N PGV  R+S+FV W+
Sbjct: 757 GVTSWGLGCARPNKPGVYVRVSRFVTWI 784

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score =  107 bits (268), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR- 290
            F+  I P+CLP  +     L  G    VTGWG L E G  P VLQ V +PIV    C+ 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQ-PSVLQVVNLPIVERPVCKD 168
Query: 291 SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGI 346
           S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG 
Sbjct: 169 STRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 222
Query: 347 GCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           GC      G  T + +   W+    D  G
Sbjct: 223 GCDRDGKYGFYTHVFRLKKWIQKVIDQFG 251

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 68  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 119
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L +  +P++ N+ C        RYEF
Sbjct: 120 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLMEAQLPVIENKVCN-------RYEF 171
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGDSGGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 230
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 231 VRVSRFVTWI 240

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 20/200 (10%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR-SMFLRAGRY 299
           CLP  +     L  G    VTGWG L E G  P VLQ V +PIV    C+ S  +R    
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKDSTRIR---- 173
Query: 300 EFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPG 355
             I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC      G
Sbjct: 174 --ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYG 231
Query: 356 VCTRISKFVPWVLDTGDSGG 375
             T + +   W+    D  G
Sbjct: 232 FYTHVFRLKKWIQKVIDQFG 251

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GCA
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCA 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RKGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           + Y +P + SL    + +     V++    S      S++++R+GE++    E    +  
Sbjct: 8   KAYSQPHQVSLNSGYH-FCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFIS 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR 265
              V +  HP Y+ +  + D+ L++L         + P+ LP S     G   TV+GWG 
Sbjct: 67  SSRVIR--HPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALP-SSCAPAGTMCTVSGWGN 123
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                +    LQ + +PI+S   C + +        I++   CAG+  GG+DSCQGDSGG
Sbjct: 124 TMSSTADKNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGG 178
Query: 326 PLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           P+   G+     L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 179 PVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 71  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 122
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 123 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 174
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGD+GGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 175 LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 233
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 234 VRVSRFVTWI 243

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 68  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 119
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 120 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 171
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGD+GGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 230
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 231 VRVSRFVTWI 240

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 70  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 121
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 122 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 173
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGD+GGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 174 LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 232
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 233 VRVSRFVTWI 242

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S  K+ +G +    LE P+  QE  V +  + P         D+AL++L +P      ++
Sbjct: 69  SSYKVILGAHQEVNLE-PH-VQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVI 120
Query: 243 PICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P CLP  + ++       +TGWG  ++G     +L++  +P++ N+ C        RYEF
Sbjct: 121 PACLPSPNYVVADRTECFITGWGE-TQGTFGAGLLKEAQLPVIENKVCN-------RYEF 172
Query: 302 ----ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               +    +CAG   GG DSCQGD+GGPL    KD +Y L G+ SWG+GCA  N PGV 
Sbjct: 173 LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD-KYILQGVTSWGLGCARPNKPGVY 231
Query: 358 TRISKFVPWV 367
            R+S+FV W+
Sbjct: 232 VRVSRFVTWI 241

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+CQGDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 213 VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWGRLSEGGS 271
           VHP Y+      DLA+++L T +    NI    L  S  D + G +ATV GWG  SEGGS
Sbjct: 74  VHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Query: 272 LPPV-LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
             PV L KVTVPIVS   CR+ +        I++   CAG  +GG+DSCQGD GGP+   
Sbjct: 132 STPVNLLKVTVPIVSRATCRAQY----GTSAITNQMFCAGVSSGGKDSCQGDXGGPI--- 184
Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             D    L G +SWG GCA  N  GV   +     ++
Sbjct: 185 -VDSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            + + + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFIENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 25/214 (11%)
Query: 179 SLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVE 236
           +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV 
Sbjct: 53  NFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110
Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 111 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170
Query: 287 EKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGI 341
             C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI
Sbjct: 171 PVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 224
Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +SWG GC +    G  T + +   W+    D  G
Sbjct: 225 VSWGEGCRDDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 20/207 (9%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  +  E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTAYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR- 290
            F+  I P+CLP  +     L  G    VTGWG L E G  P VLQ V +PIV    C+ 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ-PSVLQVVNLPIVERPVCKD 168
Query: 291 SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGI 346
           S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG 
Sbjct: 169 STRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 222
Query: 347 GCAEANLPGVCTRISKFVPWVLDTGDS 373
           GC      G  T + +   W+    D 
Sbjct: 223 GCDRDGKYGFYTHVFRLKKWIQKVIDQ 249

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 202 PYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP--GSDDLLIGENAT 259
           P QER V + ++H KY       D+AL+++  PV   P I P CLP   +      +   
Sbjct: 78  PLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCW 137
Query: 260 VTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
           VTGWG L E G    P LQ+  V ++  E C S     GR   I    +CAG+  G  D+
Sbjct: 138 VTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGR---IRSTNVCAGYPRGKIDT 194
Query: 319 CQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           CQGDSGGPL  + + +  + + GI SWG+GCA A  PGV T    ++ W+
Sbjct: 195 CQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWI 244

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 191 EYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG-- 248
           E+  +K  +P P QER V K ++H KY+  +   D+AL+++  PV     I P CLP   
Sbjct: 68  EWGTNKPVKP-PLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFR 126
Query: 249 SDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
           +    + +   V GWG L E      P+LQ+  V ++    C S     GR   I    +
Sbjct: 127 AGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGR---IRSTNV 183
Query: 308 CAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPW 366
           CAG+  G  D+CQGDSGGPL  K   +  Y + GI SWG+GCA A  PGV T    ++ W
Sbjct: 184 CAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNW 243
Query: 367 V 367
           +
Sbjct: 244 I 244

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAGF   D    D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RKGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKIGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 25/214 (11%)
Query: 179 SLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVE 236
           +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV 
Sbjct: 53  NFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110
Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 111 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170
Query: 287 EKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGI 341
             C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI
Sbjct: 171 PVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 224
Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +SWG GC      G  T + +   W+    D  G
Sbjct: 225 VSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 81  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 138
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 139 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 198
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 199 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 252
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 253 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 287

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 82  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 200 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 253
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 254 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 288

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 82  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 200 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 253
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 254 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 288

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 25/214 (11%)
Query: 179 SLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVE 236
           +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV 
Sbjct: 53  NFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110
Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 111 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170
Query: 287 EKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGI 341
             C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI
Sbjct: 171 PVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 224
Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +SWG GC      G  T + +   W+    D  G
Sbjct: 225 VSWGEGCDRDGKFGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 84  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 141
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 142 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 201
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 202 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 255
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 256 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 290

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 88  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 145
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 146 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 205
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 206 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 259
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 260 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 294

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 88  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 145
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 146 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 205
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 206 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 259
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 260 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 294

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 25/214 (11%)
Query: 179 SLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVE 236
           +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV 
Sbjct: 53  NFTENDLLVRIGKHSRTRYEANI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110
Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 111 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170
Query: 287 EKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGI 341
             C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI
Sbjct: 171 PVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 224
Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +SWG GC      G  T + +   W+    D  G
Sbjct: 225 VSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 116/233 (49%), Gaps = 35/233 (15%)
Query: 173 STESVNSLLTSQIKIRVGEYDFSKLEE----------PYPYQERGVVKKMVHPKYNFFTY 222
           +   V+ L     +IR+GE+  S  E+            P    G+ K ++H KY+    
Sbjct: 161 AAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHI 220
Query: 223 EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENAT------VTGWGRLSEGGSLPPVL 276
            +D+AL++L   V F  +I PICLP +D+L   E A       VTGWG  +E GS   VL
Sbjct: 221 MHDIALLKLNRSVPFQKHIKPICLPITDEL--KEKAEQISTYFVTGWG-TTENGSSSDVL 277
Query: 277 QKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG--RDSCQGDSGGPLQVKGKD- 333
            +  VP+     C   + RA     +    +C G   GG  +DSC+GDSGGPLQ   +  
Sbjct: 278 LQANVPLQPRSACSQAYRRA-----VPLSQLCVG---GGDLQDSCKGDSGGPLQAPAQYL 329
Query: 334 GRY----FLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKG 381
           G Y       GI+S G + C + +LPG+ T + ++V W+ DT  S G L+ +G
Sbjct: 330 GEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLLESRG 382

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 25/214 (11%)
Query: 179 SLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVE 236
           +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV 
Sbjct: 218 NFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 275
Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 276 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 335
Query: 287 EKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGI 341
             C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI
Sbjct: 336 PVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGI 389
Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +SWG GC      G  T + +   W+    D  G
Sbjct: 390 VSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 423

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 25/204 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDS 373
                G  T + +   W+    D 
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQ 256

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GD+GGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 101 KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 158
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 159 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 218
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GD+GGP  +K   + R++  G
Sbjct: 219 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMG 272
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 273 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 307

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 53  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 110
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 111 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 170
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GD+GGP  +K   + R++  G
Sbjct: 171 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMG 224
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 225 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 259

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 82  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 139
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 140 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 199
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 200 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 253
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
           I+SWG GC      G  T + +   W+    D 
Sbjct: 254 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 286

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 83  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 140
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 141 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 200
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GD+GGP  +K   + R++  G
Sbjct: 201 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMG 254
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 255 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 289

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 205 ERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGW 263
           +RG+ + +VH KY   +++YD++L  L +PV +   +  +CLP  S +   G+   VTG+
Sbjct: 66  KRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGF 125
Query: 264 GRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           G L   G     L++  V ++    C          + I+   +CAG   G  D+CQGDS
Sbjct: 126 GALKNDGYSQNHLRQAQVTLIDATTCNEP---QAYNDAITPRMLCAGSLEGKTDACQGDS 182
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL        ++LAGI+SWG  CA+ N PGV TR++    W+
Sbjct: 183 GGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWI 226

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 25/204 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYEANI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDS 373
                G  T + +   W+    D 
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQ 256

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 84  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 141
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 142 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 201
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 202 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 255
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
           I+SWG GC      G  T + +   W+    D 
Sbjct: 256 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 288

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 25/204 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 91  VRIGKHSRTRYEANI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 148
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 149 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 208
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 209 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 262
Query: 350 EANLPGVCTRISKFVPWVLDTGDS 373
                G  T + +   W+    D 
Sbjct: 263 RDGKYGFYTHVFRLKKWIQKVIDQ 286

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + ++AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S +++R+GE+     E    Y     V +  HP Y+ +    D+ L++L  P      + 
Sbjct: 44  SVLRVRLGEHHIRVNEGTEQYISSSSVIR--HPNYSSYNINNDIMLIKLTKPATLNQYVH 101
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
            + LP ++        TV+GWG      +    LQ +++PI+S+  C + +        I
Sbjct: 102 AVALP-TECAADATMCTVSGWGNTMSSVADGDKLQCLSLPILSHADCANSYPG-----MI 155
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           +    CAG+  GG+DSCQGDSGGP+   G      L G++SWG GCAE + PGV  ++  
Sbjct: 156 TQSMFCAGYLEGGKDSCQGDSGGPVVCNG-----VLQGVVSWGYGCAERDHPGVYAKVCV 210
Query: 363 FVPWVLDT 370
              WV DT
Sbjct: 211 LSGWVRDT 218

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 26/198 (13%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN---------FFTYEY--DLALVRLETP 234
           K+ +G+ +  K +EP   Q R V K + HP +N         F  Y+Y  DL L+RL  P
Sbjct: 48  KVWLGKNNLFK-DEPSA-QHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKP 105
Query: 235 VEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMF 293
            +    + PI LP +++  +G     +GWG ++         L  V + ++ NE C    
Sbjct: 106 ADITDTVKPITLP-TEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAH 164
Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEAN 352
           +     E ++D  +CAG  +GG+D+C+GDSGGPL   G      L GI SWG   C E +
Sbjct: 165 I-----EKVTDAMLCAGEMDGGKDTCKGDSGGPLICDG-----VLQGITSWGHTPCGEPD 214
Query: 353 LPGVCTRISKFVPWVLDT 370
           +PGV T+++KF  W+ DT
Sbjct: 215 MPGVYTKLNKFTSWIKDT 232

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+ DSGGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 23/205 (11%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ VHP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNV--EKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCRSMFL 294
           CLP        L  G    VTGWG L E  +       P VLQ V +PIV    C+    
Sbjct: 119 CLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCK---- 174
Query: 295 RAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAE 350
            A     I+D   CAGF   D    D+C+GDSGGP  +K   + R++  GI+SWG GC  
Sbjct: 175 -ASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDR 233
Query: 351 ANLPGVCTRISKFVPWVLDTGDSGG 375
               G  T + +   W+    D  G
Sbjct: 234 KGKYGFYTHVFRLKAWIQKVIDQFG 258

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 22/209 (10%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR- 290
            F+  I P+CLP  +     L  G    VTGWG L      P VLQ V +PIV    C+ 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK---GQPSVLQVVNLPIVERPVCKD 166
Query: 291 SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGI 346
           S  +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+SWG 
Sbjct: 167 STRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 220
Query: 347 GCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           GC      G  T + +   W+    D  G
Sbjct: 221 GCDRDGKYGFYTHVFRLKKWIQKVIDQFG 249

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 109
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 110 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 169
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CAG+  D G R D+C+ DSGGP  +K   + R++  G
Sbjct: 170 RPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNNRWYQMG 223
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           I+SWG GC      G  T + +   W+    D  G
Sbjct: 224 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN 240
            S + IR+G     +L   Y       V   +H  Y     ++ D+AL++L   V    N
Sbjct: 48  ASALDIRMGT--LKRLSPHYTQAWSEAV--FIHEGYTHDAGFDNDIALIKLNNKVVINSN 103
Query: 241 IVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
           I PICLP  +    +   +  T +GWG L++ G L   L  V +PIV ++KC + + +  
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPP 162
Query: 298 --RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ-VKGKDGRYFLAGIISWG-IGCAEANL 353
             R    +++ +CAG ++GG+DSC+GDSGG L  +  +  R+F+ GI+SWG + C EA  
Sbjct: 163 YPRGSVTANM-LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQ 221
Query: 354 PGVCTRISKFVPWV 367
            GV T++  ++PW+
Sbjct: 222 YGVYTKVINYIPWI 235

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 23/205 (11%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ VHP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNV--EKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCRSMFL 294
           CLP        L  G    VTGWG L E  +       P VLQ V +PIV    C+    
Sbjct: 119 CLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCK---- 174
Query: 295 RAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAE 350
            A     I+D   CAGF   D    D+C+GD+GGP  +K   + R++  GI+SWG GC  
Sbjct: 175 -ASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDR 233
Query: 351 ANLPGVCTRISKFVPWVLDTGDSGG 375
               G  T + +   W+    D  G
Sbjct: 234 KGKYGFYTHVFRLKRWIQKVIDQFG 258

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 178 NSLLTSQIKIRVGEYDFSKLE---------EPYPYQERGVVKKMVHPKYNFFT-YEYDLA 227
           N +LT+   +   ++D S L+          P+ Y +       +H  Y     ++ D+A
Sbjct: 193 NWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH-YTQAWSEAVFIHEGYTHDAGFDNDIA 251
Query: 228 LVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIV 284
           L++L   V    NI PICLP  +    +   +  T +GWG L++ G L   L  V +PIV
Sbjct: 252 LIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIV 310
Query: 285 SNEKCRSMFLRAGRYE-FISDIFMCAGFDNGGRDSCQGDSGGPLQ-VKGKDGRYFLAGII 342
            ++KC + + +       ++   +CAG ++GG+DSC+GDSGG L  +  +  R+F+ GI+
Sbjct: 311 DHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIV 370
Query: 343 SWG-IGCAEANLPGVCTRISKFVPWV 367
           SWG + C EA   GV T++  ++PW+
Sbjct: 371 SWGSMNCGEAGQYGVYTKVINYIPWI 396

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 25/213 (11%)
Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPV 235
            +   + + +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV
Sbjct: 56  KNFTENDLLVRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 113
Query: 236 EFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVS 285
            F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV 
Sbjct: 114 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 173
Query: 286 NEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAG 340
              C+ S  +R      I+D   CA +  D G R D+C+GDSGGP  +K   + R++  G
Sbjct: 174 RPVCKDSTRIR------ITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMG 227
Query: 341 IISWGIGCAEANLPGVCTRISKFVPWVLDTGDS 373
           I+SWG GC      G  T + +   W+    D 
Sbjct: 228 IVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ 260

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN 240
            S + IR+G     K   P+ Y +       +H  Y     ++ D+AL++L   V    N
Sbjct: 134 ASALDIRMGTL---KRLSPH-YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSN 189
Query: 241 IVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
           I PICLP  +    +   +  T +GWG L++ G L   L  V +PIV ++KC + + +  
Sbjct: 190 ITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPP 248
Query: 298 --RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ-VKGKDGRYFLAGIISWG-IGCAEANL 353
             R    +++ +CAG ++GG+DSC+GDSGG L  +  +  R+F+ GI+SWG + C EA  
Sbjct: 249 YPRGSVTANM-LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQ 307
Query: 354 PGVCTRISKFVPWV 367
            GV T++  ++PW+
Sbjct: 308 YGVYTKVINYIPWI 321

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
            ++R+G Y  S + E      +GV K + HP Y+   +  DL L++L   +    ++ PI
Sbjct: 48  FRVRLGHYSLSPVYESGQQMFQGV-KSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPI 106
Query: 245 CLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
            +  S     G    V+GWG   S     P VLQ + + ++S ++C   + R      I 
Sbjct: 107 NV-SSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQ-----ID 160
Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISK 362
           D   CAG D  GRDSCQGDSGGP+   G      L G++SWG   CA  N PGV T + K
Sbjct: 161 DTMFCAG-DKAGRDSCQGDSGGPVVCNGS-----LQGLVSWGDYPCARPNRPGVYTNLCK 214
Query: 363 FVPWVLDT 370
           F  W+ +T
Sbjct: 215 FTKWIQET 222

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 13/193 (6%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN-- 240
            + + +G++ F++  +    Q  G+ K + +  Y+ F   ++DL L+RL+   +      
Sbjct: 50  SVSVVLGQHFFNRTTDVT--QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 107
Query: 241 --IVPICLPGSDDLL-IGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRA 296
             + PICLP        G    + GWG L E  S     L++  VP+V++ KC S  +  
Sbjct: 108 QFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG 167
Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                IS   +CAG+ +   D+CQGDSGGPL  + K+G  +L GIISWG GC   + PGV
Sbjct: 168 AD---ISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGV 223
Query: 357 CTRISKFVPWVLD 369
            TR++ +V W+ D
Sbjct: 224 YTRVANYVDWIND 236

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 13/193 (6%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN-- 240
            + + +G++ F++  +    Q  G+ K + +  Y+ F   ++DL L+RL+   +      
Sbjct: 50  SVSVVLGQHFFNRTTDVT--QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 107
Query: 241 --IVPICLPGSDDLL-IGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRA 296
             + PICLP        G    + GWG L E  S     L++  VP+V++ KC S  +  
Sbjct: 108 QFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG 167
Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                IS   +CAG+ +   D+CQGDSGGPL  + K+G  +L GIISWG GC   + PGV
Sbjct: 168 AD---ISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGV 223
Query: 357 CTRISKFVPWVLD 369
            TR++ +V W+ D
Sbjct: 224 YTRVANYVDWIND 236

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN 240
            S + IR+G     +L   Y       V   +H  Y     ++ D+AL++L   V    N
Sbjct: 48  ASALDIRMGT--LKRLSPHYTQAWSEAV--FIHEGYTHDAGFDNDIALIKLNNKVVINSN 103
Query: 241 IVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
           I PICLP  +    +   +  T +GWG L++ G L   L  V +PIV ++KC + + +  
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPP 162
Query: 298 --RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ-VKGKDGRYFLAGIISWG-IGCAEANL 353
             R    +++ +CAG ++GG+DSC+GD+GG L  +  +  R+F+ GI+SWG + C EA  
Sbjct: 163 YPRGSVTANM-LCAGLESGGKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQ 221
Query: 354 PGVCTRISKFVPWV 367
            GV T++  ++PW+
Sbjct: 222 YGVYTKVINYIPWI 235

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+S G GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVEFAPN--- 240
           + + +G++ F++  +    Q  G+ K + +  Y+ F   ++DL L+RL+   +       
Sbjct: 86  VSVVLGQHFFNRTTDVT--QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQ 143
Query: 241 -IVPICLPGSDDLL-IGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRAG 297
            + PICLP        G    + GWG L E  S     L++  VP+V++ KC S  +   
Sbjct: 144 FVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGA 203
Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               IS   +CAG+ +   D+CQGDSGGPL  + K+G  +L GIISWG GC   + PGV 
Sbjct: 204 D---ISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGVY 259
Query: 358 TRISKFVPWVLD 369
           TR++ +V W+ D
Sbjct: 260 TRVANYVDWIND 271

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 25/204 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+C+GDSGGP  +K   + R++  GI+S G GC 
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDS 373
                G  T + +   W+    D 
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQ 256

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSNEKCR-SMF 293
           CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV    C+ S  
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 178
Query: 294 LRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  D G R D+ +GDSGGP  +K   + R++  GI+SWG G  
Sbjct: 179 IR------ITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGAD 232
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 233 RDGKYGFYTHVFRLKKWIQKVIDQFG 258

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 23/205 (11%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ VHP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNV--EKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCRSMFL 294
           CLP        L  G    VTGWG L E  +       P VLQ V +PIV    C     
Sbjct: 119 CLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVC----- 173
Query: 295 RAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAE 350
           +A     I+D   CAGF   D    D+C+GDSGGP  +K   + R++  GI+S G GC  
Sbjct: 174 KASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDR 233
Query: 351 ANLPGVCTRISKFVPWVLDTGDSGG 375
               G  T + +   W+    D  G
Sbjct: 234 KGKYGFYTHVFRLKRWIQKVIDQFG 258

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 195 SKLEEPYPYQERGVVKKMVHPKY---NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD 251
           + +EE        + +  VHP Y     + +E D+AL+ LE  V   PN++PICLP +D 
Sbjct: 61  TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT 120
Query: 252 LL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
              +G    V+G+G + E   +   L+ V +P+ + + C +      R +  S    CAG
Sbjct: 121 FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 178
Query: 311 FDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             +  +D+CQGDSGG   V+  +  R+   GI+SWGIGC+     G  T++  +V W+
Sbjct: 179 HPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 234

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 9/200 (4%)
Query: 170 DDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALV 229
           +D +    + L  S  KI +G++   +L      Q  GV    +HP+Y+  T+E D+ALV
Sbjct: 206 EDPTLRDSDLLSPSDFKIILGKH--WRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALV 263
Query: 230 RL-ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEK 288
            L E+PV  A  ++PICLP       G    V+GWG+       P  L ++ +PIV +  
Sbjct: 264 ELLESPVLNA-FVMPICLPEGPQQE-GAMVIVSGWGK-QFLQRFPETLMEIEIPIVDHST 320
Query: 289 CRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIG 347
           C+  +  A   + ++   +CAG   GG+D+C GDSGGP+    ++ G+++L G +SWG  
Sbjct: 321 CQKAY--APLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDD 378
Query: 348 CAEANLPGVCTRISKFVPWV 367
           C + +  GV + I     W+
Sbjct: 379 CGKKDRYGVYSYIHHNKDWI 398

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P +   TY  D AL++L  P+       P     +         TV GWG   E
Sbjct: 73  TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 127
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF-DNGGRDSCQGDSGGPL 327
           GGS    L K  VP VS+  CRS    +  +  +++  +CAG+ D GG D+CQGDSGGP+
Sbjct: 128 GGSQQRYLLKANVPFVSDAACRS----SSSFILVANEMICAGYPDTGGVDTCQGDSGGPM 183
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             K     +   GI+SWG GCA    PGV T +S F 
Sbjct: 184 FRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFA 220

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 195 SKLEEPYPYQERGVVKKMVHPKY---NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD 251
           + +EE        + +  VHP Y     + +E D+AL+ LE  V   PN++PICLP +D 
Sbjct: 150 TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT 209
Query: 252 LL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
              +G    V+G+G + E   +   L+ V +P+ + + C +      R +  S    CAG
Sbjct: 210 FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 267
Query: 311 FDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             +  +D+CQGDSGG   V+  +  R+   GI+SWGIGC+     G  T++  +V W+
Sbjct: 268 HPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 195 SKLEEPYPYQERGVVKKMVHPKY---NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD 251
           + +EE        + +  VHP Y     + +E D+AL+ LE  V   PN++PICLP +D 
Sbjct: 218 TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT 277
Query: 252 LL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
              +G    V+G+G + E   +   L+ V +P+ + + C +      R +  S    CAG
Sbjct: 278 FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 335
Query: 311 FDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             +  +D+CQGDSGG   V+  +  R+   GI+SWGIGC+     G  T++  +V W+
Sbjct: 336 HPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 391

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 9/199 (4%)
Query: 171 DFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVR 230
           D +    + L  S  KI +G++   +L      Q  GV    +HP+Y+  T+E D+ALV 
Sbjct: 52  DPTLRDSDLLSPSDFKIILGKH--WRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVE 109
Query: 231 L-ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKC 289
           L E+PV  A  ++PICLP       G    V+GWG+       P  L ++ +PIV +  C
Sbjct: 110 LLESPVLNA-FVMPICLPEGPQQE-GAMVIVSGWGKQFLQ-RFPETLMEIEIPIVDHSTC 166
Query: 290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGC 348
           +  +  A   + ++   +CAG   GG+D+C GDSGGP+    ++ G+++L G +SWG  C
Sbjct: 167 QKAY--APLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDC 224
Query: 349 AEANLPGVCTRISKFVPWV 367
            + +  GV + I     W+
Sbjct: 225 GKKDRYGVYSYIHHNKDWI 243

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 195 SKLEEPYPYQERGVVKKMVHPKY---NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD 251
           + +EE        + +  VHP Y     + +E D+AL+ LE  V   PN++PICLP +D 
Sbjct: 150 TNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT 209
Query: 252 LL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
              +G    V+G+G + E   +   L+ V +P+ + + C +      R +  S    CAG
Sbjct: 210 FYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 267
Query: 311 FDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
             +  +D+CQGD+GG   V+  +  R+   GI+SWGIGC+     G  T++  +V W+
Sbjct: 268 HPSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 17/188 (9%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           +++ +G+++  + E     ++  VV+ ++HP Y+  +++ D+ L+RL  P + +  I P 
Sbjct: 47  LQVFLGKHNLRQRESSQ--EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP- 103
Query: 245 CLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
            LP   D      +  + GWG+ ++G   P  +Q   + +VS E+C   +   G+   I+
Sbjct: 104 -LPLERDCSANTTSCHILGWGKTADG-DFPDTIQCAYIHLVSREECEHAY--PGQ---IT 156
Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISK 362
              +CAG +  G+DSCQGDSGGPL V G      L G++SWG I C     PGV T + +
Sbjct: 157 QNMLCAGDEKYGKDSCQGDSGGPL-VCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 363 FVPWVLDT 370
           +  W+  T
Sbjct: 212 YTNWIQKT 219

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 23/205 (11%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  ++ K+ +HP+YN+    + D+AL++L+ P+E +  I P+
Sbjct: 61  VRIGKHSRTRYERKV--EKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCRSMFL 294
           CLP        L  G    VTGWG   E  +       P VLQ V +P+V    C     
Sbjct: 119 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVC----- 173
Query: 295 RAGRYEFISDIFMCAGFDNG-GR--DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAE 350
           +A     I+D   CAG+  G G+  D+C+GDSGGP  +K   + R++  GI+SWG GC  
Sbjct: 174 KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDR 233
Query: 351 ANLPGVCTRISKFVPWVLDTGDSGG 375
               G  T + +   W+    D  G
Sbjct: 234 DGKYGFYTHVFRLKKWIQKVIDRLG 258

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 25/206 (12%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  ++ K+ +HP+YN+    + D+AL++L+ P+E +  I P+
Sbjct: 110 VRIGKHSRTRYERKV--EKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 167
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCR-SMF 293
           CLP        L  G    VTGWG   E  +       P VLQ V +P+V    C+ S  
Sbjct: 168 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR 227
Query: 294 LRAGRYEFISDIFMCAGFDNG-GR--DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCA 349
           +R      I+D   CAG+  G G+  D+C+GDSGGP  +K   + R++  GI+SWG GC 
Sbjct: 228 IR------ITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCD 281
Query: 350 EANLPGVCTRISKFVPWVLDTGDSGG 375
                G  T + +   W+    D  G
Sbjct: 282 RDGKYGFYTHVFRLKKWIQKVIDRLG 307

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 23/202 (11%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  ++ K+ +HP+YN+    + D+AL++L+ P+E +  I P+
Sbjct: 61  VRIGKHSRTRYERKV--EKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSEGGSL------PPVLQKVTVPIVSNEKCRSMFL 294
           CLP        L  G    VTGWG   E  +       P VLQ V +P+V    C     
Sbjct: 119 CLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVC----- 173
Query: 295 RAGRYEFISDIFMCAGFDNG-GR--DSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAE 350
           +A     I+D   CAG+  G G+  D+C+GDSGGP  +K   + R++  GI+SWG GC  
Sbjct: 174 KASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDR 233
Query: 351 ANLPGVCTRISKFVPWVLDTGD 372
               G  T + +   W+    D
Sbjct: 234 DGKYGFYTHVFRLKKWIQKVID 255

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P YN      D AL++L  P+       P     +         TV GWG   E
Sbjct: 68  TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 120
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ 328
           GGS    L K  VP VS+  CRS +      E +++  +CAG+D GG D+CQGDSGGP+ 
Sbjct: 121 GGSQQRYLLKANVPFVSDAACRSAYGN----ELVANEEICAGYDTGGVDTCQGDSGGPMF 176
Query: 329 VKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
            K     +   GI+SWG GCA     GV T +S F   +
Sbjct: 177 RKDNADEWIQVGIVSWGEGCARKGKYGVYTEVSTFASAI 215

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P YN      D AL++L  P+       P     +         TV GWG   E
Sbjct: 68  TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 120
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF-DNGGRDSCQGDSGGPL 327
           GGS    L K  VP VS+  CRS +      E +++  +CAG+ D GG D+CQGDSGGP+
Sbjct: 121 GGSQQRYLLKANVPFVSDAACRSAYGN----ELVANEEICAGYPDTGGVDTCQGDSGGPM 176
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             K     +   GI+SWG GCA    PGV T +S F 
Sbjct: 177 FRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFA 213

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P YN      D AL++L  P+       P     +         TV GWG   E
Sbjct: 68  TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 120
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF-DNGGRDSCQGDSGGPL 327
           GGS    L K  VP VS+  CRS +      E +++  +CAG+ D GG D+CQGDSGGP+
Sbjct: 121 GGSQQRYLLKANVPFVSDAACRSAYGN----ELVANEEICAGYPDTGGVDTCQGDSGGPM 176
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             K     +   GI+SWG GCA    PGV T +S F 
Sbjct: 177 FRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFA 213

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ +GEYD S L+              VHP +N        D+ALV+L    +    +  
Sbjct: 65  QVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 124
Query: 244 ICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF- 301
             LP + D+L  E    ++GWGRL  GG LP  LQ+  +P+V  E C        +Y++ 
Sbjct: 125 ANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCS-------QYDWW 177
Query: 302 ---ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGV 356
              +    +CAG D   R  C GDSGGPL     DG + + G+ S+    GC     P V
Sbjct: 178 GITVKKTMVCAGGDT--RSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTV 235
Query: 357 CTRISKFVPWVLDT 370
            TR+S F+ W+ +T
Sbjct: 236 FTRVSAFIDWINET 249

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 12/179 (6%)
Query: 194 FSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLL 253
           F  + E +P+    +     H +     Y +DL L+RL  P +   + V +    +++  
Sbjct: 65  FVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPE 124
Query: 254 IGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFD 312
           +G     +GWG +  E  S P  LQ V + I+ N++C+   ++      ++D  +C G  
Sbjct: 125 VGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQK-----VTDFMLCVGHL 179
Query: 313 NGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
            GG+D+C GDSGGPL   G      L G+ SWG + C   N P V  R+  +V W+ DT
Sbjct: 180 EGGKDTCVGDSGGPLMCDG-----VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDT 233

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P +   TY  D AL++L  P+       P     +         TV GWG   E
Sbjct: 68  TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 122
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ 328
           GGS    L K  VP VS+  CRS    +  +  +++  +CAG+D    D+CQGDSGGP+ 
Sbjct: 123 GGSQQRYLLKANVPFVSDAACRS----SSSFILVANEMICAGYDTKQEDTCQGDSGGPMF 178
Query: 329 VKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
            K     +   GI+SWG GCA     GV T +S F   +
Sbjct: 179 RKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAI 217

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P +   TY  D AL++L  P+       P     +         TV GWG   E
Sbjct: 73  TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 127
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ 328
           GGS    L K  VP VS+  CRS    +  +  +++  +CAG+D    D+CQGDSGGP+ 
Sbjct: 128 GGSQQRYLLKANVPFVSDAACRS----SSSFILVANEMICAGYDTKQEDTCQGDSGGPMF 183
Query: 329 VKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
            K     +   GI+SWG GCA     GV T +S F   +
Sbjct: 184 RKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAI 222

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE 268
            K +  P YN      D AL++L  P+       P     +         TV GWG   E
Sbjct: 68  TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 120
Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF-DNGGRDSCQGDSGGPL 327
           GGS    L K  VP VS+  CRS +      E +++  +CAG+ D GG D CQGDSGGP+
Sbjct: 121 GGSQQRYLLKANVPFVSDAACRSAYGN----ELVANEEICAGYPDTGGVDPCQGDSGGPM 176
Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             K     +   GI+SWG GCA    PGV T +S F 
Sbjct: 177 FRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFA 213

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ +GEYD S LE              VHP +N        D+ALV+L    +    +  
Sbjct: 52  QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 111
Query: 244 ICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP + D+L  E    ++GWGRL  GG LP  LQ+  +P V  E C            +
Sbjct: 112 ANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWG---ITV 168
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
               +CAG D   R  C GDSGGPL     DG + + G+ S+    GC     P V TR+
Sbjct: 169 KKTMVCAGGDT--RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRV 226
Query: 361 SKFVPWVLDT 370
           S F+ W+ +T
Sbjct: 227 SAFIDWIDET 236

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           T   ++ VG+ +  ++E+       GV    VH ++N      D+AL++L   VE +  I
Sbjct: 50  TRTYRVAVGKNNL-EVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTI 108
Query: 242 VPICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
              CLP  D LL  +    VTGWGRL   G +   LQ+   P+V +  C  +     R  
Sbjct: 109 QVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFR-- 166
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCT 358
            +    +CAG D G   +C GDSGGPL  + ++G + + GI+S+G   GC     P V T
Sbjct: 167 -VKKTMVCAGGD-GVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYT 224
Query: 359 RISKFVPWV 367
           R+S ++ W+
Sbjct: 225 RVSAYIDWI 233

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ +G +  S   EP     + V K +VH  +N    +   D+AL++L +PV     I  
Sbjct: 54  RVVLGRHSLST-NEPGSLAVK-VSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQL 111
Query: 244 ICLPGSDDLLIGENAT-VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY-EF 301
            CLP +  +L       VTGWGRL   G+ P +LQ+  + +V    C     + G +   
Sbjct: 112 GCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCS----KPGWWGST 167
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG--IGCAEANLPGVCTR 359
           +    +CAG D G   SC GDSGGPL  +G +G++ + GI+S+G  +GC   + P V TR
Sbjct: 168 VKTNMICAGGD-GIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTR 226
Query: 360 ISKFVPWV 367
           +S ++ W+
Sbjct: 227 VSNYIDWI 234

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 23/176 (13%)
Query: 212 MVHPKYNFFT-------YEYDLALVRLETPVEFAPNIVPICLPGSD---DLLIGENATVT 261
            +HP +           ++ D+ALVRL+ PV+  P + PICLPG+    +L+ G+   ++
Sbjct: 154 FIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLIS 213
Query: 262 GWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR-----AGRYEFISDIFMCAGFDNGGR 316
           GWGR +E       L+   +P+    KC+ + +      A  Y F  ++ +CAG +  G 
Sbjct: 214 GWGR-TEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNM-ICAGGEK-GM 270
Query: 317 DSCQGDSGGPLQVKGKDG--RYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           DSC+GDSGG   V+  +   +++ AG++SWG  C      G+ TR+  +V W++ T
Sbjct: 271 DSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGTY---GLYTRVKNYVDWIMKT 323

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 13/164 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLS 267
           VV+ ++HP Y+  +++ D+ L+RL  P + +  I P+ L   D      +  + GWG+ +
Sbjct: 69  VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE-RDCSAQTTSCHILGWGKTA 127
Query: 268 EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPL 327
           +G   P  +Q   + +VS E+C   +   G+   I+   +CAG +  G+DSCQGDSGGPL
Sbjct: 128 DG-DFPDTIQCAYIHLVSREECEHAY--PGQ---ITQNMLCAGDEKYGKDSCQGDSGGPL 181
Query: 328 QVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
            V G      L G++SWG I C     PGV T + ++  W+  T
Sbjct: 182 -VCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 220

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 13/164 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLS 267
           VV+ ++HP Y+  +++ D+ L+RL  P + +  I P+ L   D      +  + GWG+ +
Sbjct: 68  VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE-RDCSAQTTSCHILGWGKTA 126
Query: 268 EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPL 327
           +G   P  +Q   + +VS E+C   +   G+   I+   +CAG +  G+DSCQGDSGGPL
Sbjct: 127 DG-DFPDTIQCAYIHLVSREECEHAY--PGQ---ITQNMLCAGDEKYGKDSCQGDSGGPL 180
Query: 328 QVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
            V G      L G++SWG I C     PGV T + ++  W+  T
Sbjct: 181 -VCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 147 PYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQER 206
           P+ +P + +L +   +      V D    +       +  +R+G++     ++P   QE 
Sbjct: 9   PHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKYSVRLGDHSLQSRDQPE--QEI 66
Query: 207 GVVKKMVHPKYNFFT---YEYDLALVRLETPVEFAPNIVPICLPGSDDLL--IGENATVT 261
            V + + HP YN      + +D+ L+RL+        + P+ L    +L   +G+   ++
Sbjct: 67  QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA---NLCPKVGQKCIIS 123
Query: 262 GWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQ 320
           GWG + S   + P  L    V I S  KC   +   G+   I++  +CAG  NG  D+CQ
Sbjct: 124 GWGTVTSPQENFPNTLNCAEVKIYSQNKCERAY--PGK---ITEGMVCAGSSNGA-DTCQ 177
Query: 321 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGD 372
           GDSGGPL   G      L GI SWG   C +   PGV T+I ++  W+  T D
Sbjct: 178 GDSGGPLVCDG-----MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 13/200 (6%)
Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEY--DLALVRLETP 234
           V+ +L + I++  G +  S        Q   V    +H  Y   T  Y  D+A++ L T 
Sbjct: 46  VDGVLPNNIRVIAGLWQQSDTSGT---QTANVDSYTMHENYGAGTASYSNDIAILHLATS 102
Query: 235 VEFAPNIVPICLPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
           +    NI    LP +++    G    ++GWGR     +LP +LQK ++P+++  +C +  
Sbjct: 103 ISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAM 162
Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW----GIGCA 349
           +  G    I D  +C     G   +C GDSGGPL     DG   + G+ SW    G+G  
Sbjct: 163 VGVGGAN-IWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGAC 219
Query: 350 EANLPGVCTRISKFVPWVLD 369
             + P V TR+S ++ W+ D
Sbjct: 220 LPDYPSVYTRVSAYLGWIGD 239

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENAT-VTGWGR 265
           GV    VH K+N F    D+AL++L   VE    I   CLP    LL  +    VTGWGR
Sbjct: 87  GVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGR 146
Query: 266 LSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
           L   G +   LQ+   P+V    C     R      + +  +CAG D G   +C GDSGG
Sbjct: 147 LYTNGPIAAELQQGLQPVVDYATCSQ---RDWWGTTVKETMVCAGGD-GVISACNGDSGG 202
Query: 326 PLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWV 367
           PL  +  DG++ + GI+S+G G  C     P V TR+S ++ W+
Sbjct: 203 PLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWI 245

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP Y   T ++DL L++L       P + 
Sbjct: 50  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVR 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG ++  G  P  LQ V +P++    C       G    
Sbjct: 107 PLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---A 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I++  MCA  ++  RDSC+GDSGGPL   G      L G++SWG   C     PG+ TR+
Sbjct: 164 ITERLMCA--ESNRRDSCKGDSGGPLVCGG-----VLEGVVSWGSRVCGNRKKPGIYTRV 216
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 217 ASYAAWI 223

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 267 SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGP 326
           S G S P +LQ +  P++SN  C+S +        I+   +C GF  GG+DSCQGDSGGP
Sbjct: 1   SSGSSYPSLLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICVGFLQGGKDSCQGDSGGP 55
Query: 327 LQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +   G+     L GI+SWG GCA+ N PGV T++  +V W+  T
Sbjct: 56  VVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQT 94

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 105 ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 164
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 165 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 221
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 222 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 213 VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-S 271
           VH  YN F    D+A++RL  PV     I  + LP S D+ +G   T TGWG  S+    
Sbjct: 75  VHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP-STDVGVGTVVTPTGWGLPSDSALG 133
Query: 272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG 331
           +  VL++V VPI+SN  C ++      Y  ++D  +C     GG+ +C GDSGGPL   G
Sbjct: 134 ISDVLRQVDVPIMSNADCDAV------YGIVTDGNICID-STGGKGTCNGDSGGPLNYNG 186
Query: 332 KDGRYFLAGIISWG--IGCAEANLPGVCTRISKFVPWV 367
                   GI S+G   GC EA  P   TR++ F+ W+
Sbjct: 187 -----LTYGITSFGAAAGC-EAGYPDAFTRVTYFLDWI 218

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           +      L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  ICLP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       D+CQGDS
Sbjct: 142 KEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDACQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +++K+ VG    S+  + Y  ++      +V+  Y+ F    D+ALV L  P++F   + 
Sbjct: 50  NRLKVHVGTNYLSESGDVYDVED-----AVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQ 104
Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           PI L  +D+ L     T+TGWG    GG+ P  LQ++ + +   ++C     R      +
Sbjct: 105 PIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR------V 158
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
            D  +C      G  +C GDSGGPL   G        GI+S+G  CA    P V TR+S 
Sbjct: 159 IDSHICT-LTKRGEGACHGDSGGPLVANGAQ-----IGIVSFGSPCALGE-PDVYTRVSS 211
Query: 363 FVPWV 367
           FV W+
Sbjct: 212 FVSWI 216

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 179 SLLTSQIKIRVGE-YDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP--- 234
           S L  Q+K+ +G  Y     EE   ++   V K +VH +++  TY  D+AL++L++    
Sbjct: 65  SYLPDQLKVVLGRTYRVKPGEEEQTFK---VKKYIVHKEFDDDTYNNDIALLQLKSDSPQ 121
Query: 235 -VEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSL-PPVLQKVTVPIVSNEKCRS 291
             + + ++  ICLP ++  L       ++G+G+           L++  V +  + +C  
Sbjct: 122 CAQESDSVRAICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAP 181
Query: 292 MFLRAGRYEFISDIFMCAGFDNGG------RDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
            FL     + +++  +CAG    G       D+CQGDSGGPL V   D    L GIISWG
Sbjct: 182 KFLFN---KTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPL-VCMNDNHMTLLGIISWG 237
Query: 346 IGCAEANLPGVCTRISKFVPWVLDT 370
           +GC E ++PGV T+++ ++ W+ D 
Sbjct: 238 VGCGEKDVPGVYTKVTNYLGWIRDN 262

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 267 SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGP 326
           S G S P +LQ +  P++S+  C+S +        I+   +C GF  GG+DSCQGDSGGP
Sbjct: 1   SSGSSYPSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGP 55
Query: 327 LQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +   G+     L GI+SWG GCA+ N PGV T++  +V W+  T
Sbjct: 56  VVCNGQ-----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQT 94

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGW 263
           Q     K   HP Y+  T+  DL LV+L +    +  +  + LP   +   G   TV+GW
Sbjct: 62  QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEP-PGTTCTVSGW 120
Query: 264 GRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGD 322
           G   S   + P  L  V V ++S + C  ++      + + +  +CAG  +  +++C GD
Sbjct: 121 GTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKKNACNGD 175
Query: 323 SGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
           SGGPL  +G      L G++SWG   C + N PGV T++ KF  W+ DT
Sbjct: 176 SGGPLVCRGT-----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 32/237 (13%)
Query: 153 KESLGRPVNVYSNNEKVDDFSTESVNSLLTS------QIKIRVGEYDFSKLEEPYPYQER 206
           K S    V VY   E +        N +LT+      Q ++ +G+    + EEP   Q R
Sbjct: 9   KNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQ-EEPS-AQHR 66
Query: 207 GVVKKMVHPKYNF-----------FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIG 255
            V K   HP +N              +  DL L+RL  P +    + PI LP + +   G
Sbjct: 67  LVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALP-TKEPKPG 125
Query: 256 ENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNG 314
                +GWG ++      P  LQ V + ++ NE C  ++L+      ++D+ +CAG   G
Sbjct: 126 SKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQK-----VTDVMLCAGEMGG 180
Query: 315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
           G+D+C+ DSGGPL   G      L G  S+G + C +  +P + T + KF  W+ DT
Sbjct: 181 GKDTCRDDSGGPLICDG-----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDT 232

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGW 263
           Q     K   HP Y+  T+  DL LV+L +    +  +  + LP   +   G   TV+GW
Sbjct: 62  QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEP-PGTTCTVSGW 120
Query: 264 GRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGD 322
           G   S   + P  L  V V ++S + C  ++      + + +  +CAG  +  +++C GD
Sbjct: 121 GTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDLLENSMLCAGIPDSKKNACNGD 175
Query: 323 SGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
           SGGPL  +G      L G++SWG   C + N PGV T++ KF  W+ DT
Sbjct: 176 SGGPLVCRGT-----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ VGE++ ++ +    Y   GV K +VHP +N       YD+AL+RL   V     +  
Sbjct: 54  RVVVGEHNLNQNDGTEQY--VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQL 111
Query: 244 ICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP +  +L   +   +TGWG     G L   LQ+  +P V    C S          +
Sbjct: 112 GVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWG---STV 168
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
            +  +CAG D G R  CQGDSGGPL     +G+Y + G+ S+   +GC     P V TR+
Sbjct: 169 KNSMVCAGGD-GVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRV 226
Query: 361 SKFVPWV 367
           S ++ W+
Sbjct: 227 SAYISWI 233

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 26/202 (12%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-----------TYEYDLALVR 230
             + ++ +G+ +F  LE+    Q R V K + HP +N              Y  DL L+R
Sbjct: 47  NDKYQVWLGKNNF--LEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLR 104
Query: 231 LETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKC 289
           L  P +    + PI LP +++  +G     +GWG  +      P  LQ V + ++ NE C
Sbjct: 105 LSKPADITDVVKPITLP-TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC 163
Query: 290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-C 348
                       ++D  +CAG  +GG  +C+ DSGGPL   G      L GI SWG   C
Sbjct: 164 DKAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLICDG-----ILQGITSWGPEPC 213
Query: 349 AEANLPGVCTRISKFVPWVLDT 370
            E   P V T++ KF  W+ +T
Sbjct: 214 GEPTEPSVYTKLIKFSSWIRET 235

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ VGE++ ++      Y   GV K +VHP +N       YD+AL+RL   V     +  
Sbjct: 54  RVVVGEHNLNQNNGTEQY--VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQL 111
Query: 244 ICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP +  +L   +   +TGWG     G L   LQ+  +P V    C S          +
Sbjct: 112 GVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWG---STV 168
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
            +  +CAG D G R  CQGDSGGPL     +G+Y + G+ S+   +GC     P V TR+
Sbjct: 169 KNSMVCAGGD-GVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRV 226
Query: 361 SKFVPWV 367
           S ++ W+
Sbjct: 227 SAYISWI 233

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           +      L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           +      L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 97  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFG 156
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 157 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 213
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 214 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           + +    L P  L+   V ++S+ +C+           ++   +CA       DSCQGDS
Sbjct: 142 KENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDS 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ VGE++ ++      Y   GV K +VHP +N       YD+AL+RL   V     +  
Sbjct: 54  RVVVGEHNLNQNNGTEQY--VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQL 111
Query: 244 ICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP +  +L   +   +TGWG     G L   LQ+  +P V    C S          +
Sbjct: 112 GVLPRAGTILRNNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWG---STV 168
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
            +  +CAG D G R  CQGDSGGPL     +G+Y + G+ S+   +GC     P V TR+
Sbjct: 169 KNSMVCAGGD-GVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRV 226
Query: 361 SKFVPWV 367
           S ++ W+
Sbjct: 227 SAYISWI 233

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 212 MVHPKY--NFFTYEYDLALVRLETP----VEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
           ++H  Y  +   +  D+AL+++ +      + +  I  I LP   +D   G +  +TG+G
Sbjct: 82  ILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFG 141
Query: 265 RLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
           +      L P  L+   V ++S+ +C+           ++   +CA       DSCQGD+
Sbjct: 142 KEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDA 198
Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           GGPL V    GR  L GI+SWG GCA  + PGV TR+S F+PW+
Sbjct: 199 GGPL-VCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP     T ++DL L++L       P + 
Sbjct: 50  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVR 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG ++  G  P  LQ V +P++    C       G    
Sbjct: 107 PLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---A 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I++  MCA  ++  RDSC+GDSGGPL   G      L G+++ G   C     PG+ TR+
Sbjct: 164 ITERLMCA--ESNRRDSCKGDSGGPLVCGG-----VLEGVVTSGSAVCGNRKKPGIYTRV 216
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 217 ASYAAWI 223

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP     T ++DL L++L       P + 
Sbjct: 50  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVR 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG ++  G  P  LQ V +P++    C       G    
Sbjct: 107 PLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---A 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I++  MCA  ++  RDSC+GDSGGPL   G      L G+++ G   C     PG+ TR+
Sbjct: 164 ITERLMCA--ESNRRDSCKGDSGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRV 216
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 217 ASYAAWI 223

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP     T ++DL L++L       P + 
Sbjct: 57  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVR 113
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG ++  G  P  LQ V +P++    C       G    
Sbjct: 114 PLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---A 170
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I++  MCA  ++  RDSC+GDSGGPL   G      L G+++ G   C     PG+ TR+
Sbjct: 171 ITERLMCA--ESNRRDSCKGDSGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRV 223
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 224 ASYAAWI 230

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF--FTYEYDLALVRLETPVEFAPNIVP 243
           ++ +GE++ +  E     Q   V    +H  +N       YD+AL+RL T       +  
Sbjct: 54  RVVLGEHNLNTNEGKE--QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQL 111
Query: 244 ICLPGSDDLLIGEN-ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP S+ +L   N   +TGWG+ S GG L   L++  +P V +  C S          +
Sbjct: 112 AALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWG---STV 168
Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
               +CAG   G    C GDSGGPL  +  +G Y++ G+ S+    GC  +  P V TR+
Sbjct: 169 KTTMVCAG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRV 225
Query: 361 SKFVPWV 367
           S ++ W+
Sbjct: 226 SAYISWM 232

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
           L S I + +G ++   +E     Q   V + + HP YN  T   D+ L++L    +    
Sbjct: 46  LGSSINVTLGAHNI--MERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDK 103
Query: 241 IVPICLPGS-DDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           + PI LP S  ++  G   +V GWGRL         LQ+V + + S EKC + F      
Sbjct: 104 VSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-----K 158
Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR 359
            +I    +CAG  +  ++S  GDSGGPL   G        GI+S+G    +   P V TR
Sbjct: 159 NYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG-----VAQGIVSYGRN--DGTTPDVYTR 211
Query: 360 ISKFVPWVLDT 370
           IS F+ W+  T
Sbjct: 212 ISSFLSWIHST 222

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP     T ++DL L++L       P + 
Sbjct: 50  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVR 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG +S  G  P  LQ V +P++    C       G    
Sbjct: 107 PLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDG---A 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I+   MCA  ++  RDSC+GDSGGPL   G      L G+++ G   C     PG+ TR+
Sbjct: 164 ITQRMMCA--ESNRRDSCKGDSGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRV 216
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 217 ASYAAWI 223

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFA----PNIVPICLPGSDDLLI-GENATVTG 262
           V + + H  YN  TY+ D+AL+ ++          P  +P C+P S  L    +   V+G
Sbjct: 394 VDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSG 453
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGD 322
           WGR  +   +   LQ   V ++SN  C   +       F      CAG  +G  D+C+GD
Sbjct: 454 WGREKDNERVFS-LQWGEVKLISN--CSKFYGN----RFYEKEMECAGTYDGSIDACKGD 506
Query: 323 SGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           SGGPL     +   ++ G++SWG  C +   PGV T+++ +  W+
Sbjct: 507 SGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWI 551

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++++ +G +  S   +P P +    V++ + HP     T ++DL L++L       P + 
Sbjct: 50  KVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVR 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+     D D+  G    V GWG ++  G  P  LQ V +P++    C       G    
Sbjct: 107 PLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---A 163
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRI 360
           I++  MCA  ++  RDSC+GD+GGPL   G      L G+++ G   C     PG+ TR+
Sbjct: 164 ITERLMCA--ESNRRDSCKGDAGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRV 216
Query: 361 SKFVPWV 367
           + +  W+
Sbjct: 217 ASYAAWI 223

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 180 LLTSQIKIRVGEYDFSKLEEPYPY--------QERGVVKKMVHPKYNFFTYEYDLALVRL 231
           LLT+   +R+G  + +K ++  P         QE  + K + HP  +      D+ L++L
Sbjct: 138 LLTTAKNLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHPDNSTV----DIGLIKL 193
Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS 291
           +  V     ++PICLP  D + +G    V+GWGR +   +    L+ V +P+   EKC  
Sbjct: 194 KQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGR-NANLNFTEHLKYVMLPVADQEKCVQ 252
Query: 292 MFLRA------------GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFL 338
            +  +            G    +++   CAG      D+C GD+G    V  K D  ++ 
Sbjct: 253 YYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYA 312
Query: 339 AGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           AGI+S+   C  A   GV  R++  + W+  T
Sbjct: 313 AGILSFDKSCRTAEY-GVYVRVTSILDWIQTT 343

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S+I++ +G ++  + E+    Q   VVK + HP YN  T   D+ L++L++  + +  + 
Sbjct: 49  SKIQVTLGAHNIKEQEKMQ--QIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVK 106
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP  +  +  G+   V GWG+L   G     LQ+V + +  ++KC S      +  F
Sbjct: 107 PLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYL----KNYF 162
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
                +CAG     R S +GDSGGPL  K        AGI+S+G    + + P   T++S
Sbjct: 163 DKANEICAGDPKIKRASFRGDSGGPLVCKK-----VAAGIVSYGQN--DGSTPRAFTKVS 215
Query: 362 KFVPWVLDT 370
            F+ W+  T
Sbjct: 216 TFLSWIKKT 224

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 170 DDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV-HPKYNFFTYEYDLAL 228
           DDF   + +   +S I + +G ++   ++E  P Q+   VK+ + HP YN   +  D+ L
Sbjct: 36  DDFVLTAAHCWGSS-INVTLGAHN---IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIML 91
Query: 229 VRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE 287
           ++LE   +    + P+ LP +   +  G+  +V GWG+ +  G     LQ+V + +  + 
Sbjct: 92  LQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDR 151
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
           KC S      R+ + S I +C G     + S +GDSGGPL            GI+S+G  
Sbjct: 152 KCESDL----RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYGRN 202
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
                 P  CT++S FV W+  T
Sbjct: 203 --NGMPPRACTKVSSFVHWIKKT 223

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 170 DDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV-HPKYNFFTYEYDLAL 228
           DDF   + +   +S I + +G ++   ++E  P Q+   VK+ + HP YN   +  D+ L
Sbjct: 36  DDFVLTAAHCWGSS-INVTLGAHN---IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIML 91
Query: 229 VRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE 287
           ++LE   +    + P+ LP +   +  G+  +V GWG+ +  G     LQ+V + +  + 
Sbjct: 92  LQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDR 151
Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG 347
           KC S      R+ + S I +C G     + S +GDSGGPL            GI+S+G  
Sbjct: 152 KCESDL----RHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYGRN 202
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
                 P  CT++S FV W+  T
Sbjct: 203 --NGMPPRACTKVSSFVHWIKKT 223

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 273 PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK 332
           P  LQ+  +PIVS   C+  +        I+D+  CAG    G DSC GDSGGPL V  K
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSK-----ITDVMTCAG--ASGVDSCMGDSGGPL-VCQK 57
Query: 333 DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           DG + LAGI+SWG G    + PGV +R++  +PWV
Sbjct: 58  DGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVL 276
           N   ++ D+ L+RL  PV  + +I P+ LP S+   +G    + GWG + S   +LP V 
Sbjct: 78  NDTIWDKDIMLIRLNRPVRNSAHIAPLSLP-SNPPSVGSVCRIMGWGTITSPNATLPDVP 136
Query: 277 QKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRY 336
               + I+    C++       Y+ ++   +CAG   GG+D+C+GDSGGPL   G+    
Sbjct: 137 HCANINILDYAVCQAA------YKGLAATTLCAGILEGGKDTCKGDSGGPLICNGQ---- 186
Query: 337 FLAGIISWGIG-CAEANLPGVCTRISKFVPWV 367
              GI+S G   CA+   PG+ T++  +  W+
Sbjct: 187 -FQGILSVGGNPCAQPRKPGIYTKVFDYTDWI 217

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           I + +G ++ +  EE   +Q+  V+K+  HPKYN  T  +D+ L++L+        +  +
Sbjct: 51  ITVTLGAHNIT--EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPP---VLQKVTVPIVSNEKCRSMFLRAGRYE 300
             P   + +  G    V GWGR    G L P    LQ+V + ++  + C          +
Sbjct: 109 PFPSQKNFVPPGRMCRVAGWGRT---GVLKPGSDTLQEVKLRLMDPQACSHF------RD 159
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           F  ++ +C G     + + +GDSGGPL   G        GI+S+G   ++A  P V TRI
Sbjct: 160 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGA-----AQGIVSYGR--SDAKPPAVFTRI 212
Query: 361 SKFVPWV 367
           S + PW+
Sbjct: 213 SHYQPWI 219

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 222 YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS---LPPVLQK 278
           Y +DL L+RL++P +    +  + LP  +  L G     +GWG +  G      P  +Q 
Sbjct: 6   YSHDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPDEIQC 64
Query: 279 VTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFL 338
           V + ++ N  C          + +++  +CAG+  GG+D+C GDSGGPL   G       
Sbjct: 65  VQLTLLQNTFCAD-----AHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNG-----MW 114
Query: 339 AGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
            GI SWG   C  AN P + T++  ++ W+ DT
Sbjct: 115 QGITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 273 PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK 332
           P  LQ+  +PIVS   C+  +        I+D+  CAG    G DSC GDSGGPL V  K
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSK-----ITDVMTCAG--ASGVDSCMGDSGGPL-VCQK 57
Query: 333 DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           DG + LAGI+SWG G    + P V +R++  +PWV
Sbjct: 58  DGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY-----------NFFTYEYDLALVR 230
           ++  ++ +G  +  K +EP+  Q R V +   HP Y               +  DL L+ 
Sbjct: 42  SNNYQVLLGRNNLFK-DEPFA-QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLH 99
Query: 231 LETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSL-PPVLQKVTVPIVSNEKC 289
           L  P +    +  I LP + +  +G     +GWG  +    +    LQ V + ++SNEKC
Sbjct: 100 LSEPADITGGVKVIDLP-TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKC 158
Query: 290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-C 348
              +      + ++D+ +CAG   GG+D+C GDSGGPL   G      L GI S G   C
Sbjct: 159 IETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG-----VLQGITSGGATPC 208
Query: 349 AEANLPGVCTRISKFVPWV 367
           A+   P +  ++ KF  W+
Sbjct: 209 AKPKTPAIYAKLIKFTSWI 227

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 21/232 (9%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           RPY+  L  SL R   + +      D+   + +  L  + ++ +G +  ++ EEP   Q 
Sbjct: 12  RPYMVLL--SLDRKT-ICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITR-EEPTK-QI 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
             V K+  +P Y+  T E DL L++L    +    +  + LP   DD+  G    V GWG
Sbjct: 67  MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWG 126
Query: 265 RLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM---CAGFDNGGRDSCQG 321
           R     S    L++V + I+  + C         Y F   I M   CAG   GGRDSC G
Sbjct: 127 RTHNSASWSDTLREVNITIIDRKVCND----RNHYNFNPVIGMNMVCAGSLRGGRDSCNG 182
Query: 322 DSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWVLDT 370
           DSG PL  +G        G+ S+G+   C +   PGV   +S K + W++ T
Sbjct: 183 DSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           I + +G ++ +  EE   +Q+  V+K+  HPKYN  T  +D+ L++L+        +  +
Sbjct: 51  ITVTLGAHNIT--EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPP---VLQKVTVPIVSNEKCRSMFLRAGRYE 300
             P   + +  G    V GWGR    G L P    LQ+V + ++  + C          +
Sbjct: 109 PFPSQFNFVPPGRMCRVAGWGRT---GVLKPGSDTLQEVKLRLMDPQACSHF------RD 159
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           F  ++ +C G     + + +GDSGGPL   G        GI+S+G   ++A  P V TRI
Sbjct: 160 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGA-----AQGIVSYGR--SDAKPPAVFTRI 212
Query: 361 SKFVPWV 367
           S + PW+
Sbjct: 213 SHYQPWI 219

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           I + +G ++ +  EE   +Q+  V+K+  HPKYN  T  +D+ L++L+        +  +
Sbjct: 51  ITVTLGAHNIT--EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPP---VLQKVTVPIVSNEKCRSMFLRAGRYE 300
             P   + +  G    V GWGR    G L P    LQ+V + ++  + C          +
Sbjct: 109 PFPSQFNFVPPGRMCRVAGWGRT---GVLKPGSDTLQEVKLRLMDPQACSHF------RD 159
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           F  ++ +C G     + + +GDSGGPL   G        GI+S+G   ++A  P V TRI
Sbjct: 160 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGR--SDAKPPAVFTRI 212
Query: 361 SKFVPWV 367
           S + PW+
Sbjct: 213 SHYRPWI 219

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 21/232 (9%)
Query: 146 RPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQE 205
           RPY+  L  SL R   + +      D+   + +  L  + ++ +G +  ++ EEP   Q 
Sbjct: 12  RPYMVLL--SLDRKT-ICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITR-EEPTK-QI 66
Query: 206 RGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWG 264
             V K+  +P Y+  T E DL L++L    +    +  + LP   DD+  G    V GWG
Sbjct: 67  MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWG 126
Query: 265 RLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM---CAGFDNGGRDSCQG 321
           R     S    L++V + I+  + C         Y F   I M   CAG   GGRDSC G
Sbjct: 127 RTHNSASWSDTLREVEITIIDRKVCND----RNHYNFNPVIGMNMVCAGSLRGGRDSCNG 182
Query: 322 DSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWVLDT 370
           DSG PL  +G        G+ S+G+   C +   PGV   +S K + W++ T
Sbjct: 183 DSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           I + +G ++ +  EE   +Q+  V+K+  HPKYN  T  +D+ L++L+        +  +
Sbjct: 51  ITVTLGAHNIT--EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPP---VLQKVTVPIVSNEKCRSMFLRAGRYE 300
             P   + +  G    V GWGR    G L P    LQ+V + ++  + C          +
Sbjct: 109 PFPSQFNFVPPGRMCRVAGWGRT---GVLKPGSDTLQEVKLRLMDPQACSHF------RD 159
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           F  ++ +C G     + + +GDSGGPL   G        GI+S+G   ++A  P V TRI
Sbjct: 160 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGR--SDAKPPAVFTRI 212
Query: 361 SKFVPWV 367
           S + PW+
Sbjct: 213 SHYRPWI 219

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           I + +G ++ +  EE   +Q+  V+K+  HPKYN  T  +D+ L++L+        +  +
Sbjct: 53  ITVTLGAHNIT--EEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 110
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPP---VLQKVTVPIVSNEKCRSMFLRAGRYE 300
             P   + +  G    V GWGR    G L P    LQ+V + ++  + C          +
Sbjct: 111 PFPSQFNFVPPGRMCRVAGWGRT---GVLKPGSDTLQEVKLRLMDPQACSHF------RD 161
Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
           F  ++ +C G     + + +GDSGGPL   G        GI+S+G   ++A  P V TRI
Sbjct: 162 FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGR--SDAKPPAVFTRI 214
Query: 361 SKFVPWV 367
           S + PW+
Sbjct: 215 SHYRPWI 221

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPP--VLQKVTVP 282
           D+ LV+L+T  +   ++  + +     L  G    VTGWG  ++  SL P   L++VTV 
Sbjct: 92  DIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWG-ATDPDSLRPSDTLREVTVT 150
Query: 283 IVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGII 342
           ++S + C S     G   FI+   +CAG   G +DSC+GD+GGPL  KG         I+
Sbjct: 151 VLSRKLCNSQSYYNGD-PFITKDMVCAGDAKGQKDSCKGDAGGPLICKG-----VFHAIV 204
Query: 343 SWGIGCAEANLPGVCTRIS-KFVPWV 367
           S G  C  A  PG+ T ++ K+  W+
Sbjct: 205 SGGHECGVATKPGIYTLLTKKYQTWI 230

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLS-EGGSLPPVL 276
           N+  ++ D+ L+RL++PV+ + +I P     S    +G    + GWGR+S   G+ P V 
Sbjct: 81  NYTLWDKDIMLIRLDSPVKNSKHIAPF-SLPSSPPSVGSVCRIMGWGRISPTEGTYPDVP 139
Query: 277 QKVTVPIVSNEKCRSMFLRAGRYEF-ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGR 335
             V + ++  E CR+ +     +E   +   +CAG   GG+D+C+GDSGGPL   G+   
Sbjct: 140 HCVNINLLEYEMCRAPY---PEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNGQ--- 193
Query: 336 YFLAGIISWGIG-CAEANLPGVCTRISKFVPWV 367
               GI SWG   CA+ + P   T++   + W+
Sbjct: 194 --FQGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 14/225 (6%)
Query: 147 PYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQER 206
           P+ +P + +L     ++ +   V      S      +   I +G +     +EP      
Sbjct: 9   PHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVE 68
Query: 207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRL 266
             +  + HP+YN      DL L++L+  V  +  I  I +  S     G +  V+GWG L
Sbjct: 69  ASLS-VRHPEYNRPLLANDLMLIKLDESVSESDTIRSISI-ASQCPTAGNSCLVSGWGLL 126
Query: 267 SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGP 326
           + G  +P VLQ V V +VS E C  ++              CAG     +DSC GDSGGP
Sbjct: 127 ANG-RMPTVLQCVNVSVVSEEVCSKLY-----DPLYHPSMFCAGGGQDQKDSCNGDSGGP 180
Query: 327 LQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
           L   G     +L G++S+G   C +  +PGV T + KF  W+  T
Sbjct: 181 LICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAP--NI 241
           +I + +G +D  K E     Q+  V K+++H  YN     +D+ L++LE  VE  P  N+
Sbjct: 50  EITVILGAHDVRKRESTQ--QKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNV 107
Query: 242 VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           VP+  P SD +  G      GWG+          L++V + I+  + C  +  R   Y+F
Sbjct: 108 VPLPSP-SDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKAC--VDYRYYEYKF 164
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
                +C G     R +  GDSGGPL   G        GI+S+  G  +A  P + TR+S
Sbjct: 165 ----QVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSY--GHPDAKPPAIFTRVS 213
Query: 362 KFVPWV 367
            +VPW+
Sbjct: 214 TYVPWI 219

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 17/174 (9%)
Query: 200 PYPYQERGVVK-KMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
           P+P  +  ++K + + P  +     +DL L+RL  P E    +  + LP  +  L G   
Sbjct: 73  PHPLYDMSLLKNRFLRPGDD---SSHDLMLLRLSEPAELTDAVKVMDLPTQEPAL-GTTC 128
Query: 259 TVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD 317
             +GWG +  E    P  LQ V + ++SN+ C  +  +      ++   +CAG   GG+ 
Sbjct: 129 YASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQK-----VTKFMLCAGRWTGGKS 183
Query: 318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
           +C GDSGGPL   G      L GI SWG   CA    P + T++  +  W+ DT
Sbjct: 184 TCSGDSGGPLVCNG-----VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDT 232

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 60/227 (26%)
Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETP----VEFAPNIVPICLPGSD-DLLIGENA 258
           Q+  V K +VH +++  TY+ D+AL++L++      + +  +  +CLP +D  L      
Sbjct: 88  QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 147
Query: 259 TVTGWGRLSEGGSLPPV----LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNG 314
            ++G+G+     +L P     L++  V +  + +C S  L       ++D  +CAG    
Sbjct: 148 ELSGYGKHE---ALSPFYSERLKEAHVRLYPSSRCTSQHLLN---RTVTDNMLCAG---- 197
Query: 315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG 374
                   SGGP                       +ANL   C             GDSG
Sbjct: 198 -----DTRSGGP-----------------------QANLHDACQ------------GDSG 217
Query: 375 GPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GPL V   DGR  L GIISWG+GC + ++PGV T+++ ++ W+ D +
Sbjct: 218 GPL-VCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 263

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 60/227 (26%)
Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETP----VEFAPNIVPICLPGSD-DLLIGENA 258
           Q+  V K +VH +++  TY+ D+AL++L++      + +  +  +CLP +D  L      
Sbjct: 75  QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 134
Query: 259 TVTGWGRLSEGGSLPPV----LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNG 314
            ++G+G+     +L P     L++  V +  + +C S  L       ++D  +CAG    
Sbjct: 135 ELSGYGKHE---ALSPFYSERLKEAHVRLYPSSRCTSQHLLN---RTVTDNMLCAG---- 184
Query: 315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG 374
                   SGGP                       +ANL   C             GDSG
Sbjct: 185 -----DTRSGGP-----------------------QANLHDACQ------------GDSG 204
Query: 375 GPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GPL V   DGR  L GIISWG+GC + ++PGV T+++ ++ W+ D +
Sbjct: 205 GPL-VCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E    +    V + + HP YN   +  D+ L++LE   ++   + 
Sbjct: 48  SSINVTLGAHNIKEQERTQQFIP--VKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVR 105
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP S   +  G+  +V GWG +S   +L   LQ+V + +  + +C  +F   G Y  
Sbjct: 106 PLRLPSSKAQVKPGQLCSVAGWGYVSM-STLATTLQEVLLTVQKDCQCERLF--HGNYSR 162
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            ++I  C G     +   +GDSGGPL  K         GI+S+  G  +   PGV  ++S
Sbjct: 163 ATEI--CVGDPKKTQTGFKGDSGGPLVCKD-----VAQGILSY--GNKKGTPPGVYIKVS 213
Query: 362 KFVPWVLDT 370
            F+PW+  T
Sbjct: 214 HFLPWIKRT 222

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-TYEYDLALVRLETPVEFAPN 240
           ++  ++++G +    L E    Q R   +K + P  N     + D+ L++L+ P+  + +
Sbjct: 43  STNFQMQLGVHSKKVLNEDE--QTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKH 100
Query: 241 IVPICLPGSDDLLIGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           I P+ LP S+   +G    + GWG ++    + P V     + +V  E C+      G Y
Sbjct: 101 IAPLSLP-SNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQ------GAY 153
Query: 300 EFI-SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVC 357
             + +   +CAG   GG+D+C GDSGGPL   G+       GI+S+G   C +   PG+ 
Sbjct: 154 NGLPAKTTLCAGVLEGGKDTCVGDSGGPLICNGQ-----FQGIVSYGAHSCGQGPKPGIY 208
Query: 358 TRISKFVPWV 367
           T +  +  W+
Sbjct: 209 TNVFDYTDWI 218

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 223 EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVP 282
           + D+ L+RL  PV ++ +I P+ LP S    +G    + GWG++S   + P V     + 
Sbjct: 86  DKDIMLIRLRRPVTYSTHIAPVSLP-SRSRGVGSRCRIMGWGKISTT-TYPDVPHCTNIF 143
Query: 283 IVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGII 342
           IV ++ C  ++     +       +CAG   GGRD+C GDSGGPL   G+     + GI+
Sbjct: 144 IVKHKWCEPLY----PWVPADSRTLCAGILKGGRDTCHGDSGGPLICNGE-----MHGIV 194
Query: 343 SWGIG-CAEANLPGVCTRISKFVPWV 367
           + G   C +   P V T++  +  W+
Sbjct: 195 AGGSEPCGQHLKPAVYTKVFDYNNWI 220

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 214 HPKYNFF-TYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGS 271
           HP+Y      E DLAL++L+  V+ +  I P+ LP    ++  G   ++ GWG   +GG 
Sbjct: 74  HPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGR 133
Query: 272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG 331
           L  VL+++ + ++    C +     G    +S   +C   D+  +  C+GDSGGPL V G
Sbjct: 134 LSRVLRELDLQVLDTRMCNNSRFWNGS---LSPSMVCLAADSKDQAPCKGDSGGPL-VCG 189
Query: 332 KDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWV 367
           K GR  LAG++S+    C +   P V T ++ +V W+
Sbjct: 190 K-GR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E    +    V + + HP YN   +  ++ L++LE   ++   + 
Sbjct: 48  SSINVTLGAHNIKEQERTQQFIP--VKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVR 105
Query: 243 PICLPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP S   +  G+  +V GWG +S   +L   LQ+V + +  + +C  +F   G Y  
Sbjct: 106 PLRLPSSKAQVKPGQLCSVAGWGYVSM-STLATTLQEVLLTVQKDCQCERLF--HGNYSR 162
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            ++I  C G     +   +GDSGGPL  K         GI+S+  G  +   PGV  ++S
Sbjct: 163 ATEI--CVGDPKKTQTGFKGDSGGPLVCKD-----VAQGILSY--GNKKGTPPGVYIKVS 213
Query: 362 KFVPWVLDT 370
            F+PW+  T
Sbjct: 214 HFLPWIKRT 222

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           + + +G ++    EE    Q   V K + HP YN      D+ L++L    +    + P+
Sbjct: 51  MTVTLGAHNIKAKEETQ--QIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPL 108
Query: 245 CLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
            LP  +  +  G+   V GWG+++  G  P  L +V + +  ++ C S F  +  Y   +
Sbjct: 109 NLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSS--YNRAN 166
Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKF 363
           +I  C G       S +GDSGGPL  K        AGI+S+G    + + P V TR+  F
Sbjct: 167 EI--CVGDSKIKGASFRGDSGGPLVCK-----RAAAGIVSYGQ--TDGSAPQVFTRVLSF 217
Query: 364 VPWVLDT 370
           V W+  T
Sbjct: 218 VSWIKKT 224

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 273 PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK 332
           P  LQ+ ++P++SN  C+  +        I D  +CAG    G  SC GDSGGPL  K K
Sbjct: 4   PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAG--ASGVSSCMGDSGGPLVCK-K 55
Query: 333 DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +G + L GI+SWG      + PGV  R++  V WV  T
Sbjct: 56  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GDSGGPL  K K+G + L GI+SWG      + PGV  R++  V WV  T+
Sbjct: 45  GDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 214 HPKYNFF-TYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGS 271
           HP+Y      E +LAL++L+  V+ +  I P+ LP    ++  G   ++ GWG   +GG 
Sbjct: 74  HPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGR 133
Query: 272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG 331
           L  VL+++ + ++    C +     G    +S   +C   D+  +  C+GDSGGPL V G
Sbjct: 134 LSRVLRELDLQVLDTRMCNNSRFWNGS---LSPSMVCLAADSKDQAPCKGDSGGPL-VCG 189
Query: 332 KDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWV 367
           K GR  LAG++S+    C +   P V T ++ +V W+
Sbjct: 190 K-GR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 273 PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK 332
           P  LQ+ ++P++SN  C+  +        I D  +CAG    G  SC GDSGGPL  K K
Sbjct: 3   PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAG--ASGVSSCMGDSGGPLVCK-K 54
Query: 333 DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +G + L GI+SWG      + PGV  R++  V WV  T
Sbjct: 55  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 92

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GDSGGPL  K K+G + L GI+SWG      + PGV  R++  V WV  T+
Sbjct: 44  GDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 93

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 208 VVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRL 266
           V K + HP YN      D+ L++L    +    + P+ LP  +  +  G+   V GWG++
Sbjct: 72  VAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKV 131
Query: 267 SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGP 326
           +  G  P  L +V + +  ++ C S F  +  Y   ++I  C G       S + DSGGP
Sbjct: 132 TPDGEFPKTLHEVKLTVQKDQVCESQFQSS--YNRANEI--CVGDSKIKGASFEEDSGGP 187
Query: 327 LQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           L  K        AGI+S+G    + + P V TR+  FV W+  T
Sbjct: 188 LVCK-----RAAAGIVSYGQ--TDGSAPQVFTRVLSFVSWIKKT 224

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 215 PKYNFFT--------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRL 266
           PK  FF          + D+ L++L++ V  + +I P+    S    +G    + GWG+ 
Sbjct: 68  PKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPL-SLPSSPPSVGSVCRIMGWGKT 126
Query: 267 SEGGSL-PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGG 325
                + P V     + I+ +  CR+ +     +  +++  +CAG   GGRD+C  DSGG
Sbjct: 127 IPTKEIYPDVPHCANINILDHAVCRTAY----SWRQVANTTLCAGILQGGRDTCHFDSGG 182
Query: 326 PLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWV 367
           PL   G        GI+SWG   C +   PGV T++  ++ W+
Sbjct: 183 PLICNG-----IFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E     Q     + + HP+YN  T + D+ L++L   V    N+ 
Sbjct: 48  SNINVTLGAHNIQRRENTQ--QHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVN 105
Query: 243 PICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP + + L  G   TV GWGR+S        L++V + +  + +C  +F   G Y+ 
Sbjct: 106 PVALPRAQEGLRPGTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIF---GSYDP 161
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
              I  C G     + + +GDSGGPL            GI+S+G        P V TR+S
Sbjct: 162 RRQI--CVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGKSSGVP--PEVFTRVS 212
Query: 362 KFVPWVLDTGDS 373
            F+PW+  T  S
Sbjct: 213 SFLPWIRTTMRS 224

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 16/192 (8%)
Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E     Q     + + HP+YN  T + D+ L++L   V    N+ 
Sbjct: 48  SNINVTLGAHNIQRRENTQ--QHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVN 105
Query: 243 PICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP + + L  G   TV GWGR+S        L++V + +  + +C  +F   G Y+ 
Sbjct: 106 PVALPRAQEGLRPGTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLRIF---GSYDP 161
Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
              I  C G     + + +GDSGGPL            GI+S+G   +    P V TR+S
Sbjct: 162 RRQI--CVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGK--SSGVPPEVFTRVS 212
Query: 362 KFVPWVLDTGDS 373
            F+PW+  T  S
Sbjct: 213 SFLPWIRTTMRS 224

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP-KYNFFTYEYDLALVRLETPVEFAPN 240
           ++  ++++G +    L E    Q R   +K + P K N    + D+ L++L+ P+  + +
Sbjct: 44  STNFQMQLGVHSKKVLNEDE--QTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKH 101
Query: 241 IVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           I P+    S    +G    + GWG ++    + P V     + ++ +  C+     AG  
Sbjct: 102 IAPL-SLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-----AGYP 155
Query: 300 EFISDI-FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVC 357
           E +++   +CAG   GG+D+C GDSGGPL   G+       GI+S+G   C +   PG+ 
Sbjct: 156 ELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQ-----FQGIVSYGAHPCGQGPKPGIY 210
Query: 358 TRISKFVPWV 367
           T +  +  W+
Sbjct: 211 TNVFDYTDWI 220

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP-KYNFFTYEYDLALVRLETPVEFAPN 240
           ++  ++++G +    L E    Q R   +K + P K N    + D+ L++L+ P+  + +
Sbjct: 44  STDFQMQLGVHSKKVLNEDE--QTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKH 101
Query: 241 IVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           I P+    S    +G    + GWG ++    + P V     + ++ +  C+     AG  
Sbjct: 102 IAPL-SLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQ-----AGYP 155
Query: 300 EFISDI-FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVC 357
           E +++   +CAG   GG+D+C GDSGGPL   G+       GI+S+G   C +   PG+ 
Sbjct: 156 ELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQ-----FQGIVSYGAHPCGQGPKPGIY 210
Query: 358 TRISKFVPWV 367
           T +  +  W+
Sbjct: 211 TNVFDYTDWI 220

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 273 PPVLQKVTVPIVSNEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQ 328
           P VLQ V +PIV    C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  
Sbjct: 3   PSVLQVVNLPIVERPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 329 VKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +K   + R++  GI+SWG GC      G  T + +   W+    D  G
Sbjct: 57  MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 104

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 273 PPVLQKVTVPIVSNEKCR-SMFLRAGRYEFISDIFMCAGF--DNGGR-DSCQGDSGGPLQ 328
           P VLQ V +PIV    C+ S  +R      I+D   CAG+  D G R D+C+GDSGGP  
Sbjct: 3   PSVLQVVNLPIVERPVCKDSTRIR------ITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 329 VKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
           +K   + R++  GI+SWG GC      G  T + +   W+
Sbjct: 57  MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN-----------FFTYEYDLALV 229
           ++   +I +G ++ SK E+   + +  V    + P+++           +    +DL L+
Sbjct: 43  MSDDYQIWLGRHNLSKDEDTAQFHQ--VSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLL 100
Query: 230 RLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEK 288
           RL  P      +  + LP  +  L G     +GWG +S   +     LQ V + + SNEK
Sbjct: 101 RLAQPARITDAVKILDLPTQEPKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159
Query: 289 CRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG- 347
           C   +      E +++  +CA   +     C GDSGG L   G        GI SWG   
Sbjct: 160 CARAYP-----EKMTEFVLCATHRDDSGSICLGDSGGALICDG-----VFQGITSWGYSE 209
Query: 348 CAEANLPGVCTRISKFVPWVLDT 370
           CA+ N   V T++     W+ +T
Sbjct: 210 CADFNDNFVFTKVMPHKKWIKET 232

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 203 YQERGVVKK---MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIG-EN- 257
           Y+   VV     + H  +N  TY  D+AL+++   VE+  NI PI LP  ++L    EN 
Sbjct: 63  YEGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEELNNKFENI 121
Query: 258 -ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
            ATV+GWG   +  +   +LQ     ++ N++C   +        I +  +C G  + G+
Sbjct: 122 WATVSGWG---QSNTDTVILQYTYNLVIDNDRCAQEYPPG----IIVESTIC-GDTSDGK 173
Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRISKFVPWV 367
             C GDSGGP  +  K+    L G++S+  G GC E+  P   +R++ ++ W+
Sbjct: 174 SPCFGDSGGPFVLSDKN---LLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWI 222

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 27/195 (13%)
Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP-KYNFFTYEYDLALVRLETPVEFAPN 240
            +  ++++G +    L E    Q R   +K + P K N    + D+ L++L++ V  + +
Sbjct: 44  NTNFQMKLGVHSKKVLNEDE--QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEH 101
Query: 241 IVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL------ 294
           IVP+    S    +G    + GWG      S+ P+  KVT P V    C  + L      
Sbjct: 102 IVPL-SLPSSPPSVGSVCHIMGWG------SITPI--KVTYPDVP--YCAYINLLDDAVC 150
Query: 295 RAGRYEFISDI-FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEAN 352
           +AG  E +++   +CAG   GG+D+C GDSGGPL   G+       GI+S+G   C +  
Sbjct: 151 QAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQ-----FQGIVSFGAHPCGQGL 205
Query: 353 LPGVCTRISKFVPWV 367
            PGV T++  +  W+
Sbjct: 206 KPGVYTKVFDYNHWI 220

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 175 ESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP 234
            S+  LL +  K +V E  + KLE         V K+  HPKY+      D+ L++L+  
Sbjct: 49  RSITVLLGAHNK-KVKEDTWQKLE---------VEKQFPHPKYDDRLVLNDIMLLKLKEK 98
Query: 235 VEFAPNI--VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM 292
                 +  +PI    S+ +  G      GWGR +        LQ+V + I+  + C+  
Sbjct: 99  ANLTLGVGTLPISA-KSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHF 157
Query: 293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEAN 352
                  +F  +  +C G     R+  +GDSGGPL   G        GI S+ +  A+  
Sbjct: 158 ------EDFHQEPQLCVGNPKKIRNVYKGDSGGPLLCAG-----IAQGIASYVLRNAKP- 205
Query: 353 LPGVCTRISKFVPWV 367
            P V TRIS + PW+
Sbjct: 206 -PSVFTRISHYRPWI 219

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 273 PPVLQKVTVPIVSNEKCR-SMFLRAGRYEFISDIFMCAGFDNG-GR--DSCQGDSGGPLQ 328
           P VLQ V +P+V    C+ S  +R      I+D   CAG+  G G+  D+C+GDSGGP  
Sbjct: 7   PSVLQVVNLPLVERPVCKASTRIR------ITDNMFCAGYKPGEGKRGDACEGDSGGPFV 60
Query: 329 VKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGG 375
           +K   + R++  GI+SWG GC      G  T + +   W+    D  G
Sbjct: 61  MKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLG 108

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 88  LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 147
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 148 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 205
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 206 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 255

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 287 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 346
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 347 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 404
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 405 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 454

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 295 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 354
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 355 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 412
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 413 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 462

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 520 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 579
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 580 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 637
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 638 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 687

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 539 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 598
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 599 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 656
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 657 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 706

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 39/171 (22%)
Query: 212 MVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTG 262
           + HP YN            Y+YD+AL++L+  +++   I PICLP ++          T 
Sbjct: 529 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTT 588
Query: 263 WGRLSEGGSLPPVLQKVTVPIVSNEKC----RSMFLRAGR--------------YEFISD 304
             +  +   LP   Q +    VS E+     + ++++ G               Y+ + D
Sbjct: 589 TCQQQKEELLPA--QDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 646
Query: 305 I-------FMCAGFDNGGRD--SCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           I       F+C G  +   D  +C+GDSGGPL V  K  R+   G+ISWG+
Sbjct: 647 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQVGVISWGV 696

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLIGENA-TVTGWGRLSEGGSLPPVLQKVTVPI 283
           DL L++L  P      +  I LP     +  + + +V GWG  +   +   +L+   + I
Sbjct: 84  DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG-YTGLINYDGLLRVAHLYI 142
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIIS 343
           + NEKC       G+   +++  +CAG +  G   C+GD GGPL  +    R  L G+I 
Sbjct: 143 MGNEKCSQH--HRGKVT-LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVIV 198
Query: 344 WGIGCAEANLPGVCTRISKFVPWV 367
            G GCA  N PG+  R++ +  W+
Sbjct: 199 PGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLIGENA-TVTGWGRLSEGGSLPPVLQKVTVPI 283
           DL L++L  P      +  I LP     +  + + +V GWG  +   +   +L+   + I
Sbjct: 84  DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWG-YTGLINYDGLLRVAHLYI 142
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIIS 343
           + NEKC       G+   +++  +CAG +  G   C+GD GGPL  +    R  L G+I 
Sbjct: 143 MGNEKCSQH--HRGKVT-LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL-GVIV 198
Query: 344 WGIGCAEANLPGVCTRISKFVPWV 367
            G GCA  N PG+  R++ +  W+
Sbjct: 199 PGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 185 IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPI 244
           + + +G ++    E   P Q+   V ++    Y+      D+ L++L +P   + ++  +
Sbjct: 54  VNVVLGAHNVRTQE---PTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATV 110
Query: 245 CLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
            LP  D  +  G      GWGR+        VLQ++ V +V+       F R        
Sbjct: 111 QLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT------FFCRPHN----- 159
Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISK 362
              +C          C GDSGGPL   G      + GI S+ I GCA    P   TR++ 
Sbjct: 160 ---ICTFVPRRKAGICFGDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVAL 211
Query: 363 FVPWVLDT 370
           +V W+  T
Sbjct: 212 YVDWIRST 219

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 225 DLALVRLETPVEFAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPI 283
            L L++LE  V     +  ICLP    ++  G    + GWG  ++G     VL    + +
Sbjct: 85  QLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGE-TKGTGNDTVLNVALLNV 143
Query: 284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIIS 343
           +SN++C       GR   + +  MC         +C+GD GGPL     +  + L GII 
Sbjct: 144 ISNQECN--IKHRGR---VRESEMCTEGLLAPVGACEGDYGGPLACFTHNS-WVLEGIII 197
Query: 344 WGIGCAEANLPGVCTRISKFVPWV 367
               CA +  P V TR+S FV W+
Sbjct: 198 PNRVCARSRWPAVFTRVSVFVDWI 221

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 190 GEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG- 248
           GE+D    EE    Q   + +   +PK+N FT   D+ L++L TP +F+  +  +CLP  
Sbjct: 51  GEFDQGSDEENI--QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNV 108
Query: 249 SDDLLIGENATVTGWGR 265
            DD   G     TGWG+
Sbjct: 109 DDDFPPGTVCATTGWGK 125

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 8/88 (9%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  +++K+ +HP+YN+    + D+AL++L+ PV F+  I P+
Sbjct: 61  VRIGKHSRTRYERNI--EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 245 CLPGSDD----LLIGENATVTGWGRLSE 268
           CLP  +     L  G    VTGWG L E
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKE 146

>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin Length = 81

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 210 KKMVHPKYNFF-TYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWG 264
           K  +HP+YN+    + D+AL++L+ PV F+  I P+CLP  +     L  G    VTGWG
Sbjct: 10  KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69
Query: 265 RLSE 268
            L E
Sbjct: 70  NLKE 73

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
           +T+   +  GE+D     E    Q+  + K   + KYN  T   D+ L++L T   F+  
Sbjct: 45  VTTSDVVVAGEFDQGSSSEKI--QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT 102
Query: 241 IVPICLP-GSDDLLIGENATVTGWG 264
           +  +CLP  SDD   G     TGWG
Sbjct: 103 VSAVCLPSASDDFAAGTTCVTTGWG 127

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 190 GEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG- 248
           GE+D    EE    Q   + +   +PK+N FT   D+ L++L TP +F+  +  + LP  
Sbjct: 54  GEFDQGSDEENI--QVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNV 111
Query: 249 SDDLLIGENATVTGWGR 265
            DD   G     TGWG+
Sbjct: 112 DDDFPPGTVCATTGWGK 128

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFF-TYEYDLALVRLETPVEFAPNIVPI 244
           +R+G++  ++ E     ++  ++ K+ +HP+YN+    + D+AL++L+ P+E +  I P+
Sbjct: 61  VRIGKHSRTRYERKV--EKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 245 CLP----GSDDLLIGENATVTGWGRLSE 268
           CLP     +  L  G    VTGWG   E
Sbjct: 119 CLPDKQTAAKLLHAGFKGRVTGWGNRRE 146

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G ++ S+ E   P ++   V+++    Y+      D+ +++L        N+    LP 
Sbjct: 55  LGAHNLSRRE---PTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
               L  G      GWG L     +  VLQ++ V +V++   RS      R         
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVR--------- 162
Query: 308 CAGFDNGGRDS--CQGDSGGPLQVKGKDGRYFLAGIISW-GIGCAEANLPGVCTRISKFV 364
                  GR +  C GDSG PL   G      + GI S+   GCA    P     +++FV
Sbjct: 163 -------GRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV 210
Query: 365 PWV 367
            W+
Sbjct: 211 NWI 213

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G ++ S+ E   P ++   V+++    Y+      D+ +++L        N+    LP 
Sbjct: 55  LGAHNLSRRE---PTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
               L  G      GWG L     +  VLQ++ V +V++   RS      R         
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVR--------- 162
Query: 308 CAGFDNGGRDS--CQGDSGGPLQVKGKDGRYFLAGIISW-GIGCAEANLPGVCTRISKFV 364
                  GR +  C GDSG PL   G      + GI S+   GCA    P     +++FV
Sbjct: 163 -------GRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV 210
Query: 365 PWV 367
            W+
Sbjct: 211 NWI 213

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G ++ S+ E   P ++   V+++    Y+      D+ +++L        N+    LP 
Sbjct: 55  LGAHNLSRRE---PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
               L  G      GWG L     +  VLQ++ V +V++   RS      R         
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVR--------- 162
Query: 308 CAGFDNGGRDS--CQGDSGGPLQVKGKDGRYFLAGIISW-GIGCAEANLPGVCTRISKFV 364
                  GR +  C GDSG PL   G      + GI S+   GCA    P     +++FV
Sbjct: 163 -------GRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV 210
Query: 365 PWV 367
            W+
Sbjct: 211 NWI 213

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 24/190 (12%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G YD  + E     ++   +  M    Y+      DL L++L+       ++  + LP 
Sbjct: 55  LGAYDLRRRERQS--RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
            +  +  G    V GWG    GG L    + V V +   ++CR   +             
Sbjct: 113 QNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNV------------- 159
Query: 308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPW 366
           C G        C GD G PL  +G        G+ S+ +G C     P   TR++ F  W
Sbjct: 160 CTGVLTRRGGICNGDQGTPLVCEG-----LAHGVASFSLGPCGRG--PDFFTRVALFRDW 212
Query: 367 VLDTGDSGGP 376
           +    ++ GP
Sbjct: 213 IDGVLNNPGP 222

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G ++ S+ E   P ++   V+++    Y+      D+ +++L        N+    LP 
Sbjct: 55  LGAHNLSRRE---PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
               L  G      GWG L     +  VLQ++ V +V++   RS      R         
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVR--------- 162
Query: 308 CAGFDNGGRDS--CQGDSGGPLQVKGKDGRYFLAGIISW-GIGCAEANLPGVCTRISKFV 364
                  GR +  C GDSG PL   G      + GI S+   GCA    P     +++FV
Sbjct: 163 -------GRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV 210
Query: 365 PWV 367
            W+
Sbjct: 211 NWI 213

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 24/190 (12%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G YD  + E     ++   +  M    Y+      DL L++L+       ++  + LP 
Sbjct: 55  LGAYDLRRRERQS--RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
            +  +  G    V GWG    GG L    + V V +   ++CR   +             
Sbjct: 113 QNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNV------------- 159
Query: 308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPW 366
           C G        C GD G PL  +G        G+ S+ +G C     P   TR++ F  W
Sbjct: 160 CTGVLTRRGGICNGDGGTPLVCEG-----LAHGVASFSLGPCGRG--PDFFTRVALFRDW 212
Query: 367 VLDTGDSGGP 376
           +    ++ GP
Sbjct: 213 IDGVLNNPGP 222

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 24/190 (12%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G YD  + E     ++   +  M    Y+      DL L++L+       ++  + LP 
Sbjct: 55  LGAYDLRRRERQS--RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
            +  +  G    V GWG    GG L    + V V +   ++CR   +             
Sbjct: 113 QNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNV------------- 159
Query: 308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPW 366
           C G        C GD G PL  +G        G+ S+ +G C     P   TR++ F  W
Sbjct: 160 CTGVLTRRGGICNGDGGTPLVCEG-----LAHGVASFSLGPCGRG--PDFFTRVALFRDW 212
Query: 367 VLDTGDSGGP 376
           +    ++ GP
Sbjct: 213 IDGVLNNPGP 222

>pdb|2I6Q|A Chain A, Complement Component C2a Length = 517

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 47/185 (25%)
Query: 208 VVKKMVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
           + K ++ P ++ F          Y  D+AL++L   V+ + +  PICLP + +  +    
Sbjct: 300 IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRR 359
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVP--------------------------IVSNEKCRSM 292
                 R  E      +L K +VP                          +VS EK    
Sbjct: 360 PQGSTCRDHEN----ELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFP 415
Query: 293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-----IG 347
            L   R E ++D F+C+G        C+G+SGG + ++ +  R+F  G++SWG     +G
Sbjct: 416 NLTDVR-EVVTDQFLCSGTQED-ESPCKGESGGAVFLERR-FRFFQVGLVSWGLYNPCLG 472
Query: 348 CAEAN 352
            A+ N
Sbjct: 473 SADKN 477

>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5- Convertase Of Human Complement Length = 509

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 47/185 (25%)
Query: 208 VVKKMVHPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
           + K ++ P ++ F          Y  D+AL++L   V+ + +  PICLP + +  +    
Sbjct: 292 IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRR 351
Query: 259 TVTGWGRLSEGGSLPPVLQKVTVP--------------------------IVSNEKCRSM 292
                 R  E      +L K +VP                          +VS EK    
Sbjct: 352 PQGSTCRDHEN----ELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFP 407
Query: 293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-----IG 347
            L   R E ++D F+C+G        C+G+SGG + ++ +  R+F  G++SWG     +G
Sbjct: 408 NLTDVR-EVVTDQFLCSGTQED-ESPCKGESGGAVFLERR-FRFFQVGLVSWGLYNPCLG 464
Query: 348 CAEAN 352
            A+ N
Sbjct: 465 SADKN 469

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 28/183 (15%)
Query: 189 VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPG 248
           +G ++ S+ E   P ++   V+++    Y+      D+ +++L        N+    LP 
Sbjct: 55  LGAHNLSRRE---PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 249 SDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM 307
               L  G      GWG L     +  VLQ++ V +V++   RS      R         
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVR--------- 162
Query: 308 CAGFDNGGRDS--CQGDSGGPLQVKGKDGRYFLAGIISW-GIGCAEANLPGVCTRISKFV 364
                  GR +  C GD G PL   G      + GI S+   GCA    P     +++FV
Sbjct: 163 -------GRQAGVCFGDXGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFV 210
Query: 365 PWV 367
            W+
Sbjct: 211 NWI 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	4e-86
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	3e-85
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	8e-85
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-84
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	3e-84
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	2e-83
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-83
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	2e-82
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	3e-81
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	5e-81
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	1e-80
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	1e-80
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	2e-79
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	3e-79
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	4e-79
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	4e-79
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	6e-78
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-76
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	3e-76
1aut_C	250	Activated protein C; serine proteinase, plasma cal	3e-76
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	9e-76
1md8_A	329	C1R complement serine protease; innate immunity, a	2e-75
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	2e-75
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	3e-75
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-74
1gpz_A	399	Complement C1R component; hydrolase, activation, i	5e-74
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	7e-74
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	1e-73
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	1e-73
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-73
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	3e-72
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	4e-72
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-71
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	3e-71
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	4e-71
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	4e-70
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	5e-70
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	1e-69
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	1e-69
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-69
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-69
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	6e-69
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	7e-69
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	2e-68
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	4e-68
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	6e-68
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-67
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	2e-67
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-67
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	6e-67
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	7e-67
1elv_A	333	Complement C1S component; trypsin-like serin prote	8e-67
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	1e-66
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	1e-66
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	6e-66
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	4e-65
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	7e-65
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	9e-65
2aiq_A	231	Protein C activator; snake venom serine proteinase	2e-64
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	3e-64
1a7s_A	225	Heparin binding protein; serine protease homolog,	4e-64
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	6e-64
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	1e-63
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	1e-63
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-63
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-63
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	3e-63
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-63
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	3e-63
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	6e-63
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	1e-62
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-62
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	2e-62
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	2e-61
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	7e-61
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	2e-60
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	2e-60
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	6e-60
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	8e-60
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	9e-60
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	1e-59
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	3e-59
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-59
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-58
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-53
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	4e-53
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	4e-52
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-52
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	3e-51
3hrz_D	741	Complement factor B; serine protease, glycosilated	2e-46
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	1e-38
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	5e-20
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-08

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  262 bits (671), Expect = 4e-86
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 7/197 (3%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
                  +   +GE+D S+ +     Q R V + ++   Y   T  +D+AL+RL  PV  
Sbjct: 45  KIKNWRNLIAVLGEHDLSEHDGDE--QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVL 102

Query: 238 APNIVPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
             ++VP+CLP        L     + V+GWG+L + G+    L  + VP +  + C    
Sbjct: 103 TDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQS 162

Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL 353
            + G    I++   CAG+ +G +DSC+GDSGGP       G ++L GI+SWG GCA    
Sbjct: 163 RKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGH 221

Query: 354 PGVCTRISKFVPWVLDT 370
            GV TR+S+++ W+   
Sbjct: 222 FGVYTRVSQYIEWLQKL 238

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  265 bits (678), Expect = 3e-85
 Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 13/212 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             IKIR GE+D    +E  PYQER + + ++H  +N  T   D+AL+ L+ P+  A NI 
Sbjct: 189 DAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIG 248

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEG--GSLPPVLQKVTVPIVSNEKCRSMF--LRAGR 298
            ICLP    +        +GWG+   G       +L+K+ +P V  +KC++     R G 
Sbjct: 249 TICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGL 308

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPL--QVKGKDGRYFLAGIISWGIGCAEANLPGV 356
              +   F+CAG +  G+D+C GD G PL         RY   GI++WGIGC + N+PGV
Sbjct: 309 KFVLDQTFVCAGGE-QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGV 367

Query: 357 CTRISKFVPWVLDTGDSGGPLQVKGKDGRYFL 388
              ++ F  W+         +Q KG     ++
Sbjct: 368 YANVAHFRNWIDQE------MQAKGLSTTPYV 393

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  258 bits (661), Expect = 8e-85
 Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 10/197 (5%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           +     + + + VGE+D S        Q   V    V+  Y+  T E D+++++    + 
Sbjct: 45  MQGEAPALVSLVVGEHDSSAASTVR--QTHDVDSIFVNENYDPATLENDVSVIKTAVAIT 102

Query: 237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLR 295
           F  N+ PIC P   +  +   +  +GWG ++ GG   P VL+ VT+ I +N  C +++  
Sbjct: 103 FDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY-- 160

Query: 296 AGRYEFISDIFMCAGFDNG--GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL 353
               + I D  +CA  + G   RDSCQGDSGGPL VK   G + L GI+SWGIGCA    
Sbjct: 161 --TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GY 217

Query: 354 PGVCTRISKFVPWVLDT 370
           PGV +R+     W+ DT
Sbjct: 218 PGVYSRVGFHAGWITDT 234

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  257 bits (659), Expect = 2e-84
 Identities = 75/189 (39%), Positives = 110/189 (58%), Gaps = 7/189 (3%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +Q    +G +D S+   P   QER + + + HP +N FT++YD+AL+ LE P E++  + 
Sbjct: 56  TQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114

Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PI LP +  +   G+   VTGWG    GG+   +LQK  + +++   C ++  +      
Sbjct: 115 PISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ----- 169

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I+   MC GF +GG DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+ 
Sbjct: 170 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 229

Query: 362 KFVPWVLDT 370
            F  W+ + 
Sbjct: 230 LFRDWIKEN 238

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  256 bits (656), Expect = 3e-84
 Identities = 79/194 (40%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 174 TESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLET 233
               +    S ++I  GE D S  E     Q   V K ++H  +++   + D++L++L  
Sbjct: 47  VYGDDYENPSGLQIVAGELDMSVNEGSE--QIITVSKIILHENFDYNLLDNDISLLKLSG 104

Query: 234 PVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
            + F  N+ PI LP         +  VTGWG  SEGG+ P VLQKVTVP+VS+E CR+ +
Sbjct: 105 SLTFNDNVAPIALPEQGHTA-TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY 163

Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL 353
                 + I D  +CAG   GG+DSCQGDSGGPL      G  +LAGI+SWG GCA    
Sbjct: 164 ----GADEILDSMICAGVPEGGKDSCQGDSGGPLAASD-TGSTYLAGIVSWGYGCARPGY 218

Query: 354 PGVCTRISKFVPWV 367
           PGV T +S  V W+
Sbjct: 219 PGVYTEVSYHVDWI 232

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  254 bits (652), Expect = 2e-83
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 12/193 (6%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
             + K+RVG+ +  + E         V   + H ++   TY++D+A++RL+TP+ F  N+
Sbjct: 47  AKRFKVRVGDRNTEQEEGGE--AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNV 104

Query: 242 VPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
            P CLP  D     L+  +   V+G+GR  E G     L+ + VP V    C+       
Sbjct: 105 APACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS---- 160

Query: 298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVC 357
               I+    CAG+D    D+CQGDSGGP   + K   YF+ GI+SWG GCA     G+ 
Sbjct: 161 -SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFK-DTYFVTGIVSWGEGCARKGKYGIY 218

Query: 358 TRISKFVPWVLDT 370
           T+++ F+ W+  +
Sbjct: 219 TKVTAFLKWIDRS 231

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  254 bits (650), Expect = 3e-83
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 7/194 (3%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
            +L  S+    +G +  S L  P     R + + +++P YN    + D+A++ LE  V +
Sbjct: 46  RNLEPSKWTAILGLHMKSNLTSP-QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNY 104

Query: 238 APNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
              I PI LP  +     G N ++ GWG +   G+   +LQ+  VP++SNE+C+      
Sbjct: 105 TDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEY 164

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                I++  +CAG++ GG DSCQGDSGGPL  + ++ R+FLAG+ S+G  CA  N PGV
Sbjct: 165 N----ITENMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGV 219

Query: 357 CTRISKFVPWVLDT 370
             R+S+F  W+   
Sbjct: 220 YARVSRFTEWIQSF 233

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  251 bits (643), Expect = 2e-82
 Identities = 58/188 (30%), Positives = 79/188 (42%), Gaps = 13/188 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           + I    G  D           +    K +  P +   TY  D AL++L  P+       
Sbjct: 46  TSITATGGVVDLQSSSA----VKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ----- 96

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           P     +         TV GWG   EGGS    L K  VP VS+  CRS       +  +
Sbjct: 97  PTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS----SFILV 152

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           ++  +CAG+D    D+CQGDSGGP+  K     +   GI+SWG GCA     GV T +S 
Sbjct: 153 ANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVST 212

Query: 363 FVPWVLDT 370
           F   +   
Sbjct: 213 FASAIASA 220

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  248 bits (636), Expect = 3e-81
 Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 13/194 (6%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF--TYEYDLALVRLETPVEFAP 239
             +I +  GE++  + E     Q+R V++ + H  +N    TY +D+AL+ L+ P+    
Sbjct: 46  GVKITVVAGEHNIEETEHTE--QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNS 103

Query: 240 NIVPICLP---GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
            + PIC+     ++  L   +  V+GWGR+   G    VLQ + VP+V    C       
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT 163

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                I++   CAGF  GGRDSCQGDSGGP   +  +G  FL GIISWG  CA     G+
Sbjct: 164 -----ITNNMFCAGFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGI 217

Query: 357 CTRISKFVPWVLDT 370
            T++S++V W+ + 
Sbjct: 218 YTKVSRYVNWIKEK 231

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  248 bits (636), Expect = 5e-81
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 8/194 (4%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
              L    +I  G  + S + +        + + ++H  Y      +D+AL++L+ P+E+
Sbjct: 48  GLPLQDVWRIYSGILELSDITKDT--PFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEY 105

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
                PI LP   D   I  N  VTGWG   E G +  +LQKV +P+V+NE+C+  +   
Sbjct: 106 TEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY 165

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                I+   +CAG+  GG+D+C+GDSGGPL  K  +G + L GI SWG GCA    PGV
Sbjct: 166 ----KITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGV 220

Query: 357 CTRISKFVPWVLDT 370
            T++++++ W+L+ 
Sbjct: 221 YTKVAEYMDWILEK 234

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  249 bits (637), Expect = 1e-80
 Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 16/204 (7%)

Query: 179 SLLTSQIKIRVGEYDFSKLEE---------PYPYQERGVVKKMVHPKYNFFTYE--YDLA 227
            ++ +  K+R+GE++ +   +         P    + G+ + + HP Y   + +  +D+A
Sbjct: 76  RVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIA 135

Query: 228 LVRLETPVEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSN 286
           L+RL   VEF   I P+CLP  ++++ +G+  TV GWGR  E G    + QK+ VP+V  
Sbjct: 136 LIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHA 194

Query: 287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI 346
           E+C   F  AG    +    +CAG +   +DSC GDSGGPL  +  + ++FL G++S+G 
Sbjct: 195 EQCAKTFGAAGVR--VRSSQLCAGGE-KAKDSCGGDSGGPLLAERANQQFFLEGLVSFGA 251

Query: 347 GCAEANLPGVCTRISKFVPWVLDT 370
            C     PG+ T++ K+  W+   
Sbjct: 252 TCGTEGWPGIYTKVGKYRDWIEGN 275

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  247 bits (632), Expect = 1e-80
 Identities = 57/190 (30%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
                ++     G              +RG+ + +VH KY   +++YD++L  L +PV +
Sbjct: 45  TYKNPARWTASFGVTIKP------SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPY 98

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
              +  +CLP +      G+   VTG+G L   G     L++  V ++    C       
Sbjct: 99  TNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYN 158

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                I+   +CAG   G  D+CQGDSGGPL        ++LAGI+SWG  CA+ N PGV
Sbjct: 159 DA---ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGV 215

Query: 357 CTRISKFVPW 366
            TR++    W
Sbjct: 216 YTRVTALRDW 225

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  244 bits (624), Expect = 2e-79
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT--YEYDLALVRLETP 234
           V+ +L + I++  G +  S        Q   V    +H  Y   T  Y  D+A++ L T 
Sbjct: 46  VDGVLPNNIRVIAGLWQQSDTS---GTQTANVDSYTMHENYGAGTASYSNDIAILHLATS 102

Query: 235 VEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
           +    NI    LP +++    G    ++GWGR     +LP +LQK ++P+++  +C +  
Sbjct: 103 ISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAM 162

Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW----GIGCA 349
           +  G    I D  +C     G   +C GDSGGPL     DG   + G+ SW    G+G  
Sbjct: 163 VGVGGAN-IWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGAC 219

Query: 350 EANLPGVCTRISKFVPWV 367
             + P V TR+S ++ W+
Sbjct: 220 LPDYPSVYTRVSAYLGWI 237

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  244 bits (624), Expect = 3e-79
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 172 FSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF---FTYEYDLAL 228
              +   +   + + + +G  +   +EE        + +  VHP Y     + +E D+AL
Sbjct: 41  LYPKEHEAQSNASLDVFLGHTN---VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 97

Query: 229 VRLETPVEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE 287
           + LE  V   PN++PICLP +D    +G    V+G+G + E       L+ V +P+ + +
Sbjct: 98  LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQ 155

Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGI 346
            C +      R +  S    CAG  +  +D+CQGDSGG   V+  +  R+   GI+SWGI
Sbjct: 156 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 215

Query: 347 GCAEANLPGVCTRISKFVPWVLDT 370
           GC+     G  T++  +V W+   
Sbjct: 216 GCSRG--YGFYTKVLNYVDWIKKE 237

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  243 bits (623), Expect = 4e-79
 Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 8/194 (4%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
                  +++  G  + S+++E       GV + ++H +Y      YD+AL++LET V +
Sbjct: 48  GVESPKILRVYSGILNQSEIKEDT--SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNY 105

Query: 238 APNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
             +  PI LP   +  +I  +  VTGWG       +   LQK  +P+V+NE+C+  +   
Sbjct: 106 TDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--- 162

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
            R   I+   +CAG+  GG+D+C+GDSGGPL  K  +  + L GI SWG GCA+   PGV
Sbjct: 163 -RGHKITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGV 220

Query: 357 CTRISKFVPWVLDT 370
            T + ++V W+L+ 
Sbjct: 221 YTNVVEYVDWILEK 234

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  244 bits (624), Expect = 4e-79
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 7/209 (3%)

Query: 163 YSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTY 222
              +    D +    + L  S  KI +G++   + +E    Q  GV    +HP+Y+  T+
Sbjct: 44  LHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENE--QHLGVKHTTLHPQYDPNTF 101

Query: 223 EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVP 282
           E D+ALV L         ++PICLP       G    V+GWG+       P  L ++ +P
Sbjct: 102 ENDVALVELLESPVLNAFVMPICLP-EGPQQEGAMVIVSGWGKQFLQRF-PETLMEIEIP 159

Query: 283 IVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGI 341
           IV +  C+  +    +   ++   +CAG   GG+D+C GDSGGP+    +  G+++L G 
Sbjct: 160 IVDHSTCQKAYAPLKKK--VTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGT 217

Query: 342 ISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +SWG  C + +  GV + I     W+   
Sbjct: 218 VSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  240 bits (615), Expect = 6e-78
 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVE 236
                S + IR+G            Y +       +H  Y     ++ D+AL++L   V 
Sbjct: 44  QKHDASALDIRMGTLKRLS----PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVV 99

Query: 237 FAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
              NI PICLP  +    +   +  T +GWG   + G L   L  V +PIV ++KC + +
Sbjct: 100 INSNITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAY 158

Query: 294 LRAGRYEF-ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWG-IGCAE 350
            +       ++   +CAG ++GG+DSC+GDSGG L        R+F+ GI+SWG + C E
Sbjct: 159 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 218

Query: 351 ANLPGVCTRISKFVPWVLDT 370
           A   GV T++  ++PW+ + 
Sbjct: 219 AGQYGVYTKVINYIPWIENI 238

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  237 bits (608), Expect = 1e-76
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 21/208 (10%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF-FTYEYDLALVRLETPVE 236
            +   + + +R+G++  ++ E     +   + K  +HP+YN+    + D+AL++L+ PV 
Sbjct: 52  KNFTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110

Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 111 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170

Query: 287 EKCRSMFLRAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGII 342
             C+           I+D   CAG+   +    D+C+GDSGGP  +K   + R++  GI+
Sbjct: 171 PVCKDST-----RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIV 225

Query: 343 SWGIGCAEANLPGVCTRISKFVPWVLDT 370
           SWG GC      G  T + +   W+   
Sbjct: 226 SWGEGCDRDGKYGFYTHVFRLKKWIQKV 253

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  238 bits (608), Expect = 3e-76
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 21/208 (10%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF-FTYEYDLALVRLETPVE 236
            +   + + +R+G++  ++ E     +   + K  +HP+YN+    + D+AL++L+ PV 
Sbjct: 82  KNFTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 140

Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 141 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 200

Query: 287 EKCRSMFLRAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGII 342
             C+           I+D   CAG+   +    D+C+GDSGGP  +K   + R++  GI+
Sbjct: 201 PVCKDST-----RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIV 255

Query: 343 SWGIGCAEANLPGVCTRISKFVPWVLDT 370
           SWG GC      G  T + +   W+   
Sbjct: 256 SWGEGCDRDGKYGFYTHVFRLKKWIQKV 283

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  236 bits (604), Expect = 3e-76
 Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 18/199 (9%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           + ++ +R+GEYD  + E+     +  + +  VHP Y+  T + D+AL+ L  P   +  I
Sbjct: 47  SKKLLVRLGEYDLRRWEKWE--LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTI 104

Query: 242 VPICLPGSD-----DLLIGENATVTGWGRLSEGG-----SLPPVLQKVTVPIVSNEKCRS 291
           VPICLP S          G+   VTGWG  S        +   VL  + +P+V + +C  
Sbjct: 105 VPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSE 164

Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA 351
           +         +S+  +CAG     +D+C+GDSGGP+      G +FL G++SWG GC   
Sbjct: 165 VMSNM-----VSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLL 218

Query: 352 NLPGVCTRISKFVPWVLDT 370
           +  GV T++S+++ W+   
Sbjct: 219 HNYGVYTKVSRYLDWIHGH 237

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  236 bits (605), Expect = 9e-76
 Identities = 65/200 (32%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEE---PYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP 234
                +  ++  G  +           P QER V K ++H KY+  +   D+AL+++  P
Sbjct: 51  IKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPP 110

Query: 235 VEFAPNIVPICLP--GSDDLLIGENATVTGWGRLSEGGSL-PPVLQKVTVPIVSNEKCRS 291
           V     I P CLP   +    + +   V GWG L E      P+LQ+  V ++    C S
Sbjct: 111 VTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNS 170

Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGIGCAE 350
                GR   I    +CAG+  G  D+CQGDSGGPL  K   +  Y + GI SWG+GCA 
Sbjct: 171 TRWYNGR---IRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCAR 227

Query: 351 ANLPGVCTRISKFVPWVLDT 370
           A  PGV T    ++ W+   
Sbjct: 228 AKRPGVYTSTWSYLNWIASK 247

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  237 bits (606), Expect = 2e-75
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 12/204 (5%)

Query: 172 FSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF---TYEYDLAL 228
              +   +   + + + +G  +   +EE        + +  VHP Y       +E D+AL
Sbjct: 130 LYPKEHEAQSNASLDVFLGHTN---VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 186

Query: 229 VRLETPVEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE 287
           + LE  V   PN++PICLP +D    +G    V+G+G + E   +   L+ V +P+ + +
Sbjct: 187 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQ 244

Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGI 346
            C +      R +  S    CAG  +  +D+CQGDSGG   V+     R+   GI+SWGI
Sbjct: 245 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 304

Query: 347 GCAEANLPGVCTRISKFVPWVLDT 370
           GC+     G  T++  +V W+   
Sbjct: 305 GCSRG--YGFYTKVLNYVDWIKKE 326

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  234 bits (598), Expect = 2e-75
 Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 10/194 (5%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYE--YDLALVRLETPVEFAP 239
           +   ++ +GEYD S LE              VHP +N        D+ALV+L    +   
Sbjct: 48  SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGD 107

Query: 240 NIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
            +    LP + D+L       ++GWGRL  GG LP  LQ+  +P V  E C         
Sbjct: 108 KVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGIT 167

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGV 356
              +    +CAG     R  C GDSGGPL     DG + + G+ S+    GC     P V
Sbjct: 168 ---VKKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTV 222

Query: 357 CTRISKFVPWVLDT 370
            TR+S F+ W+ +T
Sbjct: 223 FTRVSAFIDWIDET 236

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  245 bits (627), Expect = 3e-75
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
                  +++  G  + S+++E       GV + ++H +Y      YD+AL++LET V +
Sbjct: 435 GVESPKILRVYSGILNQSEIKEDT--SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNY 492

Query: 238 APNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
             +  PICLP   D  +I  +  VTGWG       +   LQK  +P+V+NE+C+  +   
Sbjct: 493 TDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--- 549

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
            R   I+   +CAG+  GG+D+C+GDSGGPL  K  +  + L GI SWG GCA+   PGV
Sbjct: 550 -RGHKITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGV 607

Query: 357 CTRISKFVPWVLDT 370
            T + ++V W+L+ 
Sbjct: 608 YTNVVEYVDWILEK 621

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  232 bits (594), Expect = 1e-74
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
           +       ++++G +      E    +   +   + HP Y     + D+AL++L  P+ F
Sbjct: 45  SEHHKEAYEVKLGAHQLDSYSEDA--KVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITF 102

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPP--VLQKVTVPIVSNEKCRSMFL 294
           +  I PI LP +      G + TVTGWG ++   SL     LQ++ VP++S E C S++ 
Sbjct: 103 SRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYN 162

Query: 295 RAGRYE---FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA 351
              + E   F+ +  +CAG+  GG+D+CQGDSGGPL     +G ++L GI+SWG  C   
Sbjct: 163 IDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDACGAR 221

Query: 352 NLPGVCTRISKFVPWVLDT 370
           N PGV T  S +  W+   
Sbjct: 222 NRPGVYTLASSYASWIQSK 240

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  235 bits (602), Expect = 5e-74
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 172 FSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN---FFTYEYDLAL 228
              +   +   + + + +G  +   +EE        + +  VHP Y     + +E D+AL
Sbjct: 198 LYPKEHEAQSNASLDVFLGHTN---VEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 254

Query: 229 VRLETPVEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE 287
           + LE  V   PN++PICLP +D    +G    V+G+G + E       L+ V +P+ + +
Sbjct: 255 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQ 312

Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGI 346
            C +      R +  S    CAG  +  +D+CQGDSGG   V+  +  R+   GI+SWGI
Sbjct: 313 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 372

Query: 347 GCAEANLPGVCTRISKFVPWVLDT 370
           GC+     G  T++  +V W+   
Sbjct: 373 GCSRG--YGFYTKVLNYVDWIKKE 394

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  234 bits (599), Expect = 7e-74
 Identities = 69/198 (34%), Positives = 94/198 (47%), Gaps = 17/198 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY------NFFTYEYDLALVRLETPVE 236
           S+ ++  G    +         + GV   + H  Y      N      D+ALV L +P+ 
Sbjct: 168 SRWRVFAGAVAQASPHG----LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP 223

Query: 237 FAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
               I P+CLP +   L  G+  TVTGWG     G    VLQ+  VPI+SN+ C      
Sbjct: 224 LTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFY 283

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG---KDGRYFLAGIISWGIGCAEAN 352
             +   I     CAG+  GG D+CQGDSGGP   +    +  R+ L GI+SWG GCA A 
Sbjct: 284 GNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQ 340

Query: 353 LPGVCTRISKFVPWVLDT 370
            PGV T++S F  W+   
Sbjct: 341 KPGVYTKVSDFREWIFQA 358

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  230 bits (588), Expect = 1e-73
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 9/192 (4%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           T   ++ +G+ +    +E       GV    VH K+N F    D+AL++L   VE    I
Sbjct: 63  TLTYRVALGKNNLEVEDEA-GSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTI 121

Query: 242 VPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
              CLP    LL       VTGWGRL   G +   LQ+   P+V    C           
Sbjct: 122 QVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTT-- 179

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCT 358
            + +  +CAG D G   +C GDSGGPL  +  DG++ + GI+S+G G  C     P V T
Sbjct: 180 -VKETMVCAGGD-GVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFT 236

Query: 359 RISKFVPWVLDT 370
           R+S ++ W+   
Sbjct: 237 RVSAYIDWINQK 248

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  235 bits (600), Expect = 1e-73
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 12/200 (6%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-YEYDLALVRLETPVE 236
                S + IR+G              +       +H  Y     ++ D+AL++L   V 
Sbjct: 205 QKHDASALDIRMGTLKRLSPHY----TQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVV 260

Query: 237 FAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF 293
              NI PICLP  +    +   +  T +GWG   + G L   L  V +PIV ++KC + +
Sbjct: 261 INSNITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAY 319

Query: 294 LRAGRYEF-ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWG-IGCAE 350
            +       ++   +CAG ++GG+DSC+GDSGG L        R+F+ GI+SWG + C E
Sbjct: 320 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 379

Query: 351 ANLPGVCTRISKFVPWVLDT 370
           A   GV T++  ++PW+ + 
Sbjct: 380 AGQYGVYTKVINYIPWIENI 399

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  234 bits (598), Expect = 2e-73
 Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 27/214 (12%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPY----------PYQERGVVKKMVHPKYNFFTYEYDL 226
           V+ L     +IR+GE+  S  E+            P    G+ K ++H KY+     +D+
Sbjct: 165 VHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDI 224

Query: 227 ALVRLETPVEFAPNIVPICLPGSDDL----LIGENATVTGWGRLSEGGSLPPVLQKVTVP 282
           AL++L   V F  +I PICLP +D+L           VTGWG   E GS   VL +  VP
Sbjct: 225 ALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVP 283

Query: 283 IVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-----DGRYF 337
           +     C   + RA     +    +C G     +DSC+GDSGGPLQ   +       +  
Sbjct: 284 LQPRSACSQAYRRA-----VPLSQLCVGGG-DLQDSCKGDSGGPLQAPAQYLGEYAPKMV 337

Query: 338 LAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
             GI+S G + C + +LPG+ T + ++V W+ DT
Sbjct: 338 EFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  225 bits (577), Expect = 3e-72
 Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 15/200 (7%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
           +    + +++++ E         Y  Q   V + +VHP++       D+AL+ LE PV  
Sbjct: 49  DVKDLATLRVQLREQHLY-----YQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNI 103

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPP--VLQKVTVPIVSNEKCRSMFL 294
           +  +  + LP + +    G    VTGWG +     LPP   L++V VPI+ N  C + + 
Sbjct: 104 SSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYH 163

Query: 295 RAGRY----EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE 350
                      I D  +CAG  N  RDSCQGDSGGPL  K  +G +  AG++SWG GCA+
Sbjct: 164 LGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQ 220

Query: 351 ANLPGVCTRISKFVPWVLDT 370
            N PG+ TR++ ++ W+   
Sbjct: 221 PNRPGIYTRVTYYLDWIHHY 240

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  231 bits (591), Expect = 4e-72
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 21/208 (10%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-TYEYDLALVRLETPVE 236
            +   + + +R+G++  ++ E     +   + K  +HP+YN+    + D+AL++L+ PV 
Sbjct: 217 KNFTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 275

Query: 237 FAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------GGSLPPVLQKVTVPIVSN 286
           F+  I P+CLP  +     L  G    VTGWG L E      G   P VLQ V +PIV  
Sbjct: 276 FSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 335

Query: 287 EKCRSMFLRAGRYEFISDIFMCAGF---DNGGRDSCQGDSGGPLQVKGK-DGRYFLAGII 342
             C+           I+D   CAG+   +    D+C+GDSGGP  +K   + R++  GI+
Sbjct: 336 PVCKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIV 390

Query: 343 SWGIGCAEANLPGVCTRISKFVPWVLDT 370
           SWG GC      G  T + +   W+   
Sbjct: 391 SWGEGCDRDGKYGFYTHVFRLKKWIQKV 418

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  224 bits (573), Expect = 1e-71
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 15/197 (7%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+    S I I  G    +            + KK+   +Y+  T + + A++  E P++
Sbjct: 43  VDGTKPSDISIHYGSSYRTTK------GTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIK 96

Query: 237 F-APNIVPICLPGSD-DLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMF 293
                   I LP    D     +  V+GWG  +         L +    +V  + C   +
Sbjct: 97  LDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQY 156

Query: 294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL 353
            +    ++I D   CAG +        GD+G P    G      L G+ S+      +  
Sbjct: 157 KQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNGT-----LVGVASYISSMP-SEF 210

Query: 354 PGVCTRISKFVPWVLDT 370
           P V  R+  +V  + D 
Sbjct: 211 PSVFLRVGYYVLDIKDI 227

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  222 bits (569), Expect = 3e-71
 Identities = 71/193 (36%), Positives = 93/193 (48%), Gaps = 17/193 (8%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V+    S  +IR G    +            +    VHP Y+      DLA+++L T + 
Sbjct: 43  VSGYAQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYS--GNNNDLAILKLSTSIP 95

Query: 237 FAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFL 294
              NI    L     D + G +ATV GWG  SEGG S P  L KVTVPIVS   CR+ + 
Sbjct: 96  SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQY- 154

Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
                  I++   CAG  +GG+DSCQGDSGGP+ V   D    L G +SWG GCA  N  
Sbjct: 155 ---GTSAITNQMFCAGVSSGGKDSCQGDSGGPI-V---DSSNTLIGAVSWGNGCARPNYS 207

Query: 355 GVCTRISKFVPWV 367
           GV   +     ++
Sbjct: 208 GVYASVGALRSFI 220

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  223 bits (570), Expect = 4e-71
 Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           T+   +  GE+D     E    Q+  + K   + KYN  T   D+ L++L T   F+  +
Sbjct: 61  TTSDVVVAGEFDQGSSSEKI--QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTV 118

Query: 242 VPICLPGSDDLL-IGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
             +CLP + D    G     TGWG       + P  LQ+ ++P++SN  C+  +      
Sbjct: 119 SAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK--- 175

Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR 359
             I D  +CAG    G  SC GDSGGPL  K K+G + L GI+SWG      + PGV  R
Sbjct: 176 --IKDAMICAG--ASGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYAR 230

Query: 360 ISKFVPWVLDT 370
           ++  V WV  T
Sbjct: 231 VTALVNWVQQT 241

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  220 bits (563), Expect = 4e-70
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 13/200 (6%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-TYEYDLALVRLETP-- 234
           +S     + + +G++ F++  +    Q  G+ K + +  Y+ F   ++DL L+RL+    
Sbjct: 44  HSPPRDSVSVVLGQHFFNRTTDVT--QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 101

Query: 235 --VEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKCR 290
                +  + PICLP        G    + GWG L E  S     L++  VP+V++ KC 
Sbjct: 102 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS 161

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE 350
           S  +       IS   +CAG+ +   D+CQGDSGGPL    K+G  +L GIISWG GC  
Sbjct: 162 SPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPL-ACEKNGVAYLYGIISWGDGCGR 217

Query: 351 ANLPGVCTRISKFVPWVLDT 370
            + PGV TR++ +V W+ D 
Sbjct: 218 LHKPGVYTRVANYVDWINDR 237

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  219 bits (561), Expect = 5e-70
 Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 18/188 (9%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +++K+ VG    S+           V   +V+  Y+ F    D+ALV L  P++F   + 
Sbjct: 50  NRLKVHVGTNYLSE-----SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQ 104

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           PI L  +D+ L     T+TGWG    GG+ P  LQ++ + +   ++C     R      +
Sbjct: 105 PIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR------V 158

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
            D  +C      G  +C GDSGGPL   G        GI+S+G  CA    P V TR+S 
Sbjct: 159 IDSHICTLTK-RGEGACHGDSGGPLVANGA-----QIGIVSFGSPCALGE-PDVYTRVSS 211

Query: 363 FVPWVLDT 370
           FV W+   
Sbjct: 212 FVSWINAN 219

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  219 bits (560), Expect = 1e-69
 Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAP 239
           +   ++ +G +  S  E         V K +VH  +N    +   D+AL++L +PV    
Sbjct: 50  SRTYRVVLGRHSLSTNEPGS--LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTD 107

Query: 240 NIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
            I   CLP +  +L       VTGWGRL   G+ P +LQ+  + +V    C         
Sbjct: 108 KIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGST 167

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG--IGCAEANLPGV 356
              +    +CAG D G   SC GDSGGPL  +G +G++ + GI+S+G  +GC   + P V
Sbjct: 168 ---VKTNMICAGGD-GIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSV 223

Query: 357 CTRISKFVPWVLDT 370
            TR+S ++ W+   
Sbjct: 224 FTRVSNYIDWINSV 237

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  219 bits (561), Expect = 1e-69
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 18/205 (8%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP--- 234
                  + + +G        E    Q+  V K +VH +++  TY+ D+AL++L++    
Sbjct: 51  ERFPPHHLTVILGRTYRVVPGEEE--QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSR 108

Query: 235 -VEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKCRS 291
             + +  +  +CLP     L       ++G+G+           L++  V +  + +C S
Sbjct: 109 CAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTS 168

Query: 292 MFLRAGRYEFISDIFMCAGFDNGG------RDSCQGDSGGPLQVKGKDGRYFLAGIISWG 345
             L       ++D  +CAG    G       D+CQGDSGGPL     DGR  L GIISWG
Sbjct: 169 QHLLNRT---VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWG 224

Query: 346 IGCAEANLPGVCTRISKFVPWVLDT 370
           +GC + ++PGV T+++ ++ W+ D 
Sbjct: 225 LGCGQKDVPGVYTKVTNYLDWIRDN 249

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  218 bits (557), Expect = 2e-69
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 13/188 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S++++R+GE++    E     Q     + + HP Y+ +  + D+ L++L  P      + 
Sbjct: 44  SRVEVRLGEHNIKVTEGSE--QFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQ 101

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           P+ LP +     G   TV+GWG      +    LQ + +PI+S   C + +        I
Sbjct: 102 PVALP-TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSY-----PGMI 155

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
           ++   CAG+  GG+DSCQGDSGGP+   G+     L G++SWG GCAE   PGV  ++  
Sbjct: 156 TNAMFCAGYLEGGKDSCQGDSGGPVVCNGE-----LQGVVSWGYGCAEPGNPGVYAKVCI 210

Query: 363 FVPWVLDT 370
           F  W+  T
Sbjct: 211 FNDWLTST 218

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  220 bits (562), Expect = 2e-69
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 13/200 (6%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-TYEYDLALVRLETP-- 234
           +S     + + +G++ F++  +    Q  G+ K + +  Y+ F   ++DL L+RL+    
Sbjct: 79  HSPPRDSVSVVLGQHFFNRTTDVT--QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 136

Query: 235 --VEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKCR 290
                +  + PICLP        G    + GWG L E  S     L++  VP+V++ KC 
Sbjct: 137 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS 196

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE 350
           S  +       IS   +CAG+ +   D+CQGDSGGPL    K+G  +L GIISWG GC  
Sbjct: 197 SPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPL-ACEKNGVAYLYGIISWGDGCGR 252

Query: 351 ANLPGVCTRISKFVPWVLDT 370
            + PGV TR++ +V W+ D 
Sbjct: 253 LHKPGVYTRVANYVDWINDR 272

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  217 bits (554), Expect = 6e-69
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 16/191 (8%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
             + K+RVG+ +  + E         V   + H ++   TY++D+A++RL+TP+ F  N+
Sbjct: 47  AKRFKVRVGDRNTEQEEGGE--AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNV 104

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
            P  LP +     G    ++GWG  +  G   P  LQ +  P++S  KC +       Y 
Sbjct: 105 APASLP-TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS------YP 157

Query: 301 F-ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR 359
             I+    C GF  GG+DSCQGDSGGP+   G+     L G++SWG GCA+ N PGV T+
Sbjct: 158 GKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ-----LQGVVSWGDGCAQKNKPGVYTK 212

Query: 360 ISKFVPWVLDT 370
           +  +V W+ +T
Sbjct: 213 VYNYVKWIKNT 223

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  217 bits (555), Expect = 7e-69
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 14/201 (6%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT--YEYDLALVRLETP- 234
           +        + +G    +   +     +  V   ++H  Y+  T  +  D+AL+++ +  
Sbjct: 50  DYPKKEDYIVYLGRSRLNSNTQGE--MKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 107

Query: 235 ---VEFAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKC 289
               + +  I  I LP   +    G +  +TG+G+ +    L P  L+   V ++S+ +C
Sbjct: 108 GRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC 167

Query: 290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA 349
           +           ++   +CA       DSCQGDSGGPL      GR  L GI+SWG GCA
Sbjct: 168 QQPHYYGSE---VTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCA 223

Query: 350 EANLPGVCTRISKFVPWVLDT 370
             + PGV TR+S F+PW+   
Sbjct: 224 LKDKPGVYTRVSHFLPWIRSH 244

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  215 bits (550), Expect = 2e-68
 Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 18/196 (9%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V       I I+    +  +       +    V  +    Y   T E D+A++ L  P++
Sbjct: 45  VFDQKPETIVIQYESTNLWEDPG----KSDPYVSHVYLSFYRQETMENDIAILELSRPLK 100

Query: 237 F-APNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL 294
                  P  LP        G +  V+G+G           L+   + +V  ++CR+ + 
Sbjct: 101 LDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKY- 159

Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
                 F+S    CA     G     GD+G P   +       L G+ ++     E   P
Sbjct: 160 ---GPIFLSLQVFCAQ--KVGVSLESGDAGDPTVQQDT-----LVGVAAYFPKRPE-GAP 208

Query: 355 GVCTRISKFVPWVLDT 370
            V T++  +V W+ D 
Sbjct: 209 EVFTKVGSYVSWIQDI 224

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  215 bits (550), Expect = 4e-68
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 12/194 (6%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN--FFTYEYDLALVRLETPVEFAP 239
               ++ VGE++ ++       Q  GV K +VHP +N       YD+AL+RL   V    
Sbjct: 50  ELTFRVVVGEHNLNQNNGTE--QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNS 107

Query: 240 NIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
            +    LP +  +L       +TGWG     G L   LQ+  +P V    C S       
Sbjct: 108 YVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGST 167

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG--IGCAEANLPGV 356
              + +  +CAG D G R  CQGDSGGPL     +G+Y + G+ S+   +GC     P V
Sbjct: 168 ---VKNSMVCAGGD-GVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTV 222

Query: 357 CTRISKFVPWVLDT 370
            TR+S ++ W+ + 
Sbjct: 223 FTRVSAYISWINNV 236

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  213 bits (545), Expect = 1e-67
 Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 16/190 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I++R+GE + + +E     Q     K +VHP YN  T   D+ L++L++       + 
Sbjct: 44  SGIQVRLGEDNINVVEGNE--QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVA 101

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            I LP +     G    ++GWG     G S P VL+ +  PI+S+  C+S       Y  
Sbjct: 102 SISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA------YPG 154

Query: 302 -ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
            I+    CAG+  GG+DSCQGDSGGP+   GK     L GI+SWG GCA+ N PGV T++
Sbjct: 155 QITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-----LQGIVSWGSGCAQKNKPGVYTKV 209

Query: 361 SKFVPWVLDT 370
             +V W+  T
Sbjct: 210 CNYVSWIKQT 219

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  213 bits (545), Expect = 2e-67
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 10/195 (5%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
                    + +G +  SK E     Q   + K +   +        D+ LV+L+T  + 
Sbjct: 47  RFTKGQSPTVVLGAHSLSKNEASK--QTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKL 104

Query: 238 APNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKCRSMFLRA 296
             ++  + +     L  G    VTGWG        P   L++VTV ++S + C S     
Sbjct: 105 NKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYN 164

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           G   FI+   +CAG   G +DSC+GD+GGPL  KG         I+S G  C  A  PG+
Sbjct: 165 GDP-FITKDMVCAGDAKGQKDSCKGDAGGPLICKG-----VFHAIVSGGHECGVATKPGI 218

Query: 357 CTRIS-KFVPWVLDT 370
            T ++ K+  W+   
Sbjct: 219 YTLLTKKYQTWIKSN 233

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  222 bits (567), Expect = 4e-67
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           + +  T + +I     D+   +         V + + H  YN  TY+ D+AL+ ++    
Sbjct: 364 LRASKTHRYQIWTTVVDWIHPDLK-RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGN 422

Query: 237 F----APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS 291
                 P  +P C+P S  L    +   V+GWGR  +       LQ   V ++SN  C  
Sbjct: 423 KKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKLISN--CSK 479

Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA 351
            +       F      CAG  +G  D+C+GDSGGPL     +   ++ G++SWG  C + 
Sbjct: 480 FY----GNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKP 535

Query: 352 NLPGVCTRISKFVPW 366
             PGV T+++ +  W
Sbjct: 536 EFPGVYTKVANYFDW 550

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  212 bits (542), Expect = 6e-67
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 14/194 (7%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
            S   S  K+ +G +    LE     QE  V +  + P         D+AL++L +P   
Sbjct: 63  KSPRPSSYKVILGAHQEVNLEPHV--QEIEVSRLFLEPTRK------DIALLKLSSPAVI 114

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
              ++P CLP  + ++       +TGWG          +L++  +P++ N+ C       
Sbjct: 115 TDKVIPACLPSPNYVVADRTECFITGWGETQGTFG-AGLLKEAQLPVIENKVCNRYEFLN 173

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR   +    +CAG   GG DSCQGD+GGPL V  +  +Y L G+ SWG+GCA  N PGV
Sbjct: 174 GR---VQSTELCAGHLAGGTDSCQGDAGGPL-VCFEKDKYILQGVTSWGLGCARPNKPGV 229

Query: 357 CTRISKFVPWVLDT 370
             R+S+FV W+   
Sbjct: 230 YVRVSRFVTWIEGV 243

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  212 bits (541), Expect = 7e-67
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 13/194 (6%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYE--YDLALVRLETPVEFAP 239
               ++ +GE++ +  E     Q   V    +H  +N       YD+AL+RL T      
Sbjct: 50  ARTWRVVLGEHNLNTNEGKE--QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNS 107

Query: 240 NIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
            +    LP S+ +L       +TGWG+ S GG L   L++  +P V +  C S       
Sbjct: 108 AVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGST 167

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGV 356
              +    +CAG   G    C GDSGGPL  +  +G Y++ G+ S+    GC  +  P V
Sbjct: 168 ---VKTTMVCAG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTV 221

Query: 357 CTRISKFVPWVLDT 370
            TR+S ++ W+   
Sbjct: 222 FTRVSAYISWMNGI 235

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  215 bits (548), Expect = 8e-67
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 22/205 (10%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF-------TYEYDLALVRLETP 234
             +  + VG             +        +HP +           ++ D+ALVRL+ P
Sbjct: 125 NREPTMYVGSTSVQTSRLA-KSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDP 183

Query: 235 VEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS 291
           V+  P + PICLPG+     L+ G+   ++GWGR  +       L+   +P+    KC+ 
Sbjct: 184 VKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDR-AVRLKAARLPVAPLRKCKE 242

Query: 292 MFLRAGRYEF----ISDIFMCAGFDNGGRDSCQGDSGGPL--QVKGKDGRYFLAGIISWG 345
           + +     +      +   +CAG +  G DSC+GDSGG    Q      +++ AG++SWG
Sbjct: 243 VKVEKPTADAEAYVFTPNMICAGGE-KGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG 301

Query: 346 IGCAEANLPGVCTRISKFVPWVLDT 370
             C      G+ TR+  +V W++ T
Sbjct: 302 PQCGT---YGLYTRVKNYVDWIMKT 323

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  211 bits (539), Expect = 1e-66
 Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           +      ++++ +G +  S+ E     +   V++ + HP     T ++DL L++L     
Sbjct: 43  LEDAADGKVQVLLGAHSLSQPEPSK--RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKAT 100

Query: 237 FAPNIVPICLP-GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
             P + P+       D+  G    V GWG ++  G  P  LQ V +P++    C      
Sbjct: 101 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 160

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLP 354
            G    I++  MCA   +  RDSC+GD+GGPL   G      L G+++ G   C     P
Sbjct: 161 DGA---ITERLMCAE--SNRRDSCKGDAGGPLVCGG-----VLEGVVTSGSRVCGNRKKP 210

Query: 355 GVCTRISKFVPWVLDT 370
           G+ TR++ +  W+   
Sbjct: 211 GIYTRVASYAAWIDSV 226

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  211 bits (539), Expect = 1e-66
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN-FFTYEYDLALVRLETPVEFAPN 240
            +Q+++ +G +         P     +   + HP+Y      E DLAL++L+  V+ +  
Sbjct: 47  MAQLRLVLGLHTLDS-----PGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT 101

Query: 241 IVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           I P+ LP    ++  G   ++ GWG   +GG L  VL+++ + ++    C +     G  
Sbjct: 102 IRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGS- 160

Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCT 358
             +S   +C   D+  +  C+GDSGGPL          LAG++S+    C +   P V T
Sbjct: 161 --LSPSMVCLAADSKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVAT 215

Query: 359 RISKFVPWVLDT 370
            ++ +V W+   
Sbjct: 216 AVAPYVSWIRKV 227

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  209 bits (534), Expect = 6e-66
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E     Q   V + + HP YN   +  D+ L++LE   +    + 
Sbjct: 48  SSINVTLGAHNIKEQEPTQ--QFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQ 105

Query: 243 PICLP-GSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP     +  G+  +V GWG+ +  G     LQ+V + +  + KC S      R+ +
Sbjct: 106 PLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL----RHYY 161

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
            S I +C G     + S +GDSGGPL            GI+S+G        P  CT++S
Sbjct: 162 DSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYGRNNGMP--PRACTKVS 214

Query: 362 KFVPWVLDT 370
            FV W+  T
Sbjct: 215 SFVHWIKKT 223

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  207 bits (529), Expect = 4e-65
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 12/195 (6%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
             S      +  +G +D     +    Q   V + +  P+ +      DL L++L  P  
Sbjct: 42  FPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGS------DLVLMKLARPAV 95

Query: 237 FAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
               +  I LP     +    + +V GWG          +L+   + I+ NEKC      
Sbjct: 96  LDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINY-DGLLRVAHLYIMGNEKCSQHHRG 154

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG 355
                 +++  +CAG +  G   C+GD GGPL V  +     + G+I  G GCA  N PG
Sbjct: 155 KVT---LNESEICAGAEKIGSGPCEGDYGGPL-VCEQHKMRMVLGVIVPGRGCAIPNRPG 210

Query: 356 VCTRISKFVPWVLDT 370
           +  R++ +  W+   
Sbjct: 211 IFVRVAYYAKWIHKI 225

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  206 bits (526), Expect = 7e-65
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 17/190 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           ++  + +G             Q     K   HP Y+  T+  DL LV+L +    +  + 
Sbjct: 45  NEYTVHLGSDTLGDRRA----QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP   +   G   TV+GWG  +    + P  L  V V ++S + C  ++      + 
Sbjct: 101 KVRLPSRCEPP-GTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-----KDL 154

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRI 360
           + +  +CAG  +  +++C GDSGGPL  +G      L G++SWG   C + N PGV T++
Sbjct: 155 LENSMLCAGIPDSKKNACNGDSGGPLVCRG-----TLQGLVSWGTFPCGQPNDPGVYTQV 209

Query: 361 SKFVPWVLDT 370
            KF  W+ DT
Sbjct: 210 CKFTKWINDT 219

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  206 bits (527), Expect = 9e-65
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 14/194 (7%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
             +  +  ++ +G    +        Q   V K +  P  +       L L++LE  V  
Sbjct: 44  CHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTL 97

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
              +  ICLP    ++  G    + GWG     G+   VL    + ++SN++C       
Sbjct: 98  NQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGR 156

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                + +  MC         +C+GD GGPL        + L GII     CA +  P V
Sbjct: 157 -----VRESEMCTEGLLAPVGACEGDYGGPL-ACFTHNSWVLEGIIIPNRVCARSRWPAV 210

Query: 357 CTRISKFVPWVLDT 370
            TR+S FV W+   
Sbjct: 211 FTRVSVFVDWIHKV 224

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  205 bits (524), Expect = 2e-64
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             ++I +G ++   L +    +     K       N   ++ D+ L+RL  PV  + +I 
Sbjct: 44  GNMRIYLGMHNLKVLNKD-ALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIA 102

Query: 243 PICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP S+   +G    + GWG ++    +LP V     + I+    C++       Y+ 
Sbjct: 103 PLSLP-SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAA------YKG 155

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRI 360
           ++   +CAG   GG+D+C+GDSGGPL   G+       GI+S G   CA+   PG+ T++
Sbjct: 156 LAATTLCAGILEGGKDTCKGDSGGPLICNGQ-----FQGILSVGGNPCAQPRKPGIYTKV 210

Query: 361 SKFVPWVLDT 370
             +  W+   
Sbjct: 211 FDYTDWIQSI 220

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  205 bits (524), Expect = 3e-64
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMV-HPKYNFFTYEYDLALVRLETPVEFAPNI 241
              +I++G +      E    Q R   +K       N+  ++ D+ L+RL++PV+ + +I
Sbjct: 47  KNFRIKLGMHSKKVPNEDE--QTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHI 104

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
            P  LP S    +G    + GWGR+S   G+ P V   V + ++  E CR+ +       
Sbjct: 105 APFSLP-SSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPY--PEFEL 161

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTR 359
             +   +CAG   GG+D+C+GDSGGPL   G+       GI SWG   CA+ + P   T+
Sbjct: 162 PATSRTLCAGILEGGKDTCKGDSGGPLICNGQ-----FQGIASWGDDPCAQPHKPAAYTK 216

Query: 360 ISKFVPWVLDT 370
           +   + W+ + 
Sbjct: 217 VFDHLDWIENI 227

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  204 bits (521), Expect = 4e-64
 Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
             S       + +G YD  + E     ++   +  M    Y+      DL L++L+    
Sbjct: 43  FQSQNPGVSTVVLGAYDLRRRERQS--RQTFSISSMSENGYDPQQNLNDLMLLQLDREAN 100

Query: 237 FAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS-MFL 294
              ++  + LP  +  +  G    V GWG    GG L    + V V +   ++CR     
Sbjct: 101 LTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNN-- 158

Query: 295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLP 354
                       +C G        C GD G PL  +G        G+ S+ +G      P
Sbjct: 159 ------------VCTGVLTRRGGICNGDGGTPLVCEG-----LAHGVASFSLGPC-GRGP 200

Query: 355 GVCTRISKFVPWVLDTGDSGGP 376
              TR++ F  W+    ++ GP
Sbjct: 201 DFFTRVALFRDWIDGVLNNPGP 222

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  204 bits (521), Expect = 6e-64
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
              ++R+G Y  S + E    Q    VK + HP Y+   +  DL L++L   +    ++ 
Sbjct: 46  KVFRVRLGHYSLSPVYES-GQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVR 104

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PI +  S     G    V+GWG         P VLQ + + ++S ++C   +        
Sbjct: 105 PINVS-SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAY-----PRQ 158

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRI 360
           I D   CAG    GRDSCQGDSGGP+   G      L G++SWG   CA  N PGV T +
Sbjct: 159 IDDTMFCAGDK-AGRDSCQGDSGGPVVCNGS-----LQGLVSWGDYPCARPNRPGVYTNL 212

Query: 361 SKFVPWVLDT 370
            KF  W+ +T
Sbjct: 213 CKFTKWIQET 222

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  203 bits (518), Expect = 1e-63
 Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E     Q   V + + HP YN  T   D+ L++L    +    + 
Sbjct: 48  SSINVTLGAHNIMERERTQ--QVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVS 105

Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           PI LP S   +  G   +V GWGRL         LQ+V + + S EKC + F       +
Sbjct: 106 PINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-----KNY 160

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
           I    +CAG  +  ++S  GDSGGPL   G        GI+S+G        P V TRIS
Sbjct: 161 IPFTQICAGDPSKRKNSFSGDSGGPLVCNGV-----AQGIVSYGRND--GTTPDVYTRIS 213

Query: 362 KFVPWVLDT 370
            F+ W+  T
Sbjct: 214 SFLSWIHST 222

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  203 bits (518), Expect = 1e-63
 Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 15/189 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             +++ +G+++  + E     ++  VV+ ++HP Y+  +++ D+ L+RL  P + +  I 
Sbjct: 45  PNLQVFLGKHNLRQRESSQ--EQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQ 102

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           P+ L   D      +  + GWG+ ++ G  P  +Q   + +VS E+C   +        I
Sbjct: 103 PLPLE-RDCSANTTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAY-----PGQI 155

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRIS 361
           +   +CAG +  G+DSCQGDSGGPL          L G++SWG I C     PGV T + 
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVC 210

Query: 362 KFVPWVLDT 370
           ++  W+  T
Sbjct: 211 RYTNWIQKT 219

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  203 bits (518), Expect = 2e-63
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
            + ++ +G +  ++ E     Q   V K+  +P Y+  T E DL L++L    +    + 
Sbjct: 46  KRSQVILGAHSITREEPTK--QIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVT 103

Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP   D +  G    V GWGR     S    L++V + I+  + C            
Sbjct: 104 ILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPV- 162

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTR 359
           I    +CAG   GGRDSC GDSG PL  +G        G+ S+G+   C +   PGV   
Sbjct: 163 IGMNMVCAGSLRGGRDSCNGDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYIL 217

Query: 360 IS-KFVPWVLDT 370
           +S K + W++ T
Sbjct: 218 LSKKHLNWIIMT 229

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  202 bits (516), Expect = 2e-63
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 24/196 (12%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           V ++    +++ +G ++ S+ E   P ++   V+++    Y+      D+ +++L     
Sbjct: 43  VANVNVRAVRVVLGAHNLSRRE---PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSAT 99

Query: 237 FAPNIVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
              N+    LP     L  G      GWG L     +  VLQ++ V +V++   RS    
Sbjct: 100 INANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN--- 156

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLP 354
                      +C          C GDSG PL   G      + GI S+   GCA    P
Sbjct: 157 -----------VCTLVRGRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYP 200

Query: 355 GVCTRISKFVPWVLDT 370
                +++FV W+   
Sbjct: 201 DAFAPVAQFVNWIDSI 216

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  202 bits (516), Expect = 3e-63
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
            +I + +G +D  K E     Q+  V K+++H  YN     +D+ L++LE  VE  P + 
Sbjct: 49  REITVILGAHDVRKRESTQ--QKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVN 106

Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            + LP   D +  G      GWG+          L++V + I+  + C           +
Sbjct: 107 VVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD------YRYY 160

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
                +C G     R +  GDSGGPL   G        GI+S+G     A  P + TR+S
Sbjct: 161 EYKFQVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSYGHPD--AKPPAIFTRVS 213

Query: 362 KFVPWVLDT 370
            +VPW+   
Sbjct: 214 TYVPWINAV 222

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  202 bits (516), Expect = 3e-63
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 15/190 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKM-VHPKYNFFTYEYDLALVRLETPVEFAPNI 241
             I+I++G +  +   E    Q R    K            + D+ L+RL  PV ++ +I
Sbjct: 47  RNIRIKLGMHSKNIRNEDE--QIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHI 104

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
            P+ LP S    +G    + GWG++S   + P V     + IV ++ C  ++     +  
Sbjct: 105 APVSLP-SRSRGVGSRCRIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLY----PWVP 158

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRI 360
                +CAG   GGRD+C GDSGGPL   G+     + GI++ G   C +   P V T++
Sbjct: 159 ADSRTLCAGILKGGRDTCHGDSGGPLICNGE-----MHGIVAGGSEPCGQHLKPAVYTKV 213

Query: 361 SKFVPWVLDT 370
             +  W+   
Sbjct: 214 FDYNNWIQSI 223

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  202 bits (516), Expect = 3e-63
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP-KYNFFTYEYDLALVRLETPVEFAPNI 241
           +  ++++G +    L E    Q R   +K + P K N    + D+ L++L++ V  + +I
Sbjct: 45  TNFQMKLGVHSKKVLNEDE--QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHI 102

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
           VP+ LP S    +G    + GWG ++    + P V     + ++ +  C++ +      E
Sbjct: 103 VPLSLP-SSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY-----PE 156

Query: 301 FISDIFM-CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCT 358
            +++    CAG   GG+D+C GDSGGPL   G+       GI+S+G   C +   PGV T
Sbjct: 157 LLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQ-----FQGIVSFGAHPCGQGLKPGVYT 211

Query: 359 RISKFVPWVLDT 370
           ++  +  W+   
Sbjct: 212 KVFDYNHWIQSI 223

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  201 bits (514), Expect = 6e-63
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 14/189 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             + + +G ++    EE    Q   V K + HP YN      D+ L++L    +    + 
Sbjct: 49  RSMTVTLGAHNIKAKEETQ--QIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVR 106

Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP  +  +  G+   V GWG+++  G  P  L +V + +  ++ C S F    +  +
Sbjct: 107 PLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF----QSSY 162

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
                +C G       S + DSGGPL  K        AGI+S+G      + P V TR+ 
Sbjct: 163 NRANEICVGDSKIKGASFEEDSGGPLVCKRA-----AAGIVSYGQTD--GSAPQVFTRVL 215

Query: 362 KFVPWVLDT 370
            FV W+  T
Sbjct: 216 SFVSWIKKT 224

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  200 bits (512), Expect = 1e-62
 Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           +   I +G +     +EP   Q       + HP+YN      DL L++L+  V  +  I 
Sbjct: 45  NSYTIGLGLHSLEADQEPGS-QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIR 103

Query: 243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
            I +  S     G +  V+GWG L+  G +P VLQ V V +VS E C  ++         
Sbjct: 104 SISIA-SQCPTAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKLY-----DPLY 156

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRIS 361
                CAG     +DSC GDSGGPL   G     +L G++S+G   C +  +PGV T + 
Sbjct: 157 HPSMFCAGGGQDQKDSCNGDSGGPLICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLC 211

Query: 362 KFVPWVLDT 370
           KF  W+  T
Sbjct: 212 KFTEWIEKT 220

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  200 bits (510), Expect = 2e-62
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 16/191 (8%)

Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
               I + +G ++ ++ E+ +  Q+  V+K+  HPKYN  T  +D+ L++L+        
Sbjct: 47  AGRSITVTLGAHNITEEEDTW--QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLA 104

Query: 241 IVPICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           +  +  P   + +  G    V GWGR          LQ+V + ++  + C          
Sbjct: 105 VGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH------FR 158

Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR 359
           +F  ++ +C G     + + +GDSGGPL   G        GI+S+G     A  P V TR
Sbjct: 159 DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGV-----AQGIVSYGRSD--AKPPAVFTR 211

Query: 360 ISKFVPWVLDT 370
           IS + PW+   
Sbjct: 212 ISHYRPWINQI 222

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  200 bits (510), Expect = 2e-62
 Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 17/191 (8%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
              + + +G ++  + E              VH  YN F    D+A++RL  PV     I
Sbjct: 46  AGFVDVVLGAHNIREDEATQ--VTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAI 103

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
             + LP S D+ +G   T TGWG  S+    +  VL++V VPI+SN  C +       Y 
Sbjct: 104 ATVGLP-STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDA------VYG 156

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTR 359
            ++D  +C     GG+ +C GDSGGPL   G        GI S+G     EA  P   TR
Sbjct: 157 IVTDGNICIDST-GGKGTCNGDSGGPLNYNGL-----TYGITSFGAAAGCEAGYPDAFTR 210

Query: 360 ISKFVPWVLDT 370
           ++ F+ W+   
Sbjct: 211 VTYFLDWIQTQ 221

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  197 bits (504), Expect = 2e-61
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
           S I + +G ++  + E     Q     + + HP+YN  T + D+ L++L   V    N+ 
Sbjct: 48  SNINVTLGAHNIQRRENTQ--QHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVN 105

Query: 243 PICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
           P+ LP + + L  G   TV GWGR+S        L++V + +  + +C  +F       +
Sbjct: 106 PVALPRAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIF-----GSY 159

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS 361
                +C G     + + +GDSGGPL            GI+S+G        P V TR+S
Sbjct: 160 DPRRQICVGDRRERKAAFKGDSGGPLLCNNV-----AHGIVSYGKSSGVP--PEVFTRVS 212

Query: 362 KFVPWVLDT 370
            F+PW+  T
Sbjct: 213 SFLPWIRTT 221

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  196 bits (501), Expect = 7e-61
 Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 26/201 (12%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-----------YEYDLALVRL 231
            + ++ +G+ +F + E     Q R V K + HP +N              Y  DL L+RL
Sbjct: 48  DKYQVWLGKNNFLEDEPSD--QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 105

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCR 290
             P +    + PI LP +++  +G     +GWG  +      P  LQ V + ++ NE C 
Sbjct: 106 SKPADITDVVKPITLP-TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD 164

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCA 349
                      ++D  +CAG  +GG  +C+ DSGGPL   G      L GI SWG   C 
Sbjct: 165 KAH-----EMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG-----ILQGITSWGPEPCG 214

Query: 350 EANLPGVCTRISKFVPWVLDT 370
           E   P V T++ KF  W+ +T
Sbjct: 215 EPTEPSVYTKLIKFSSWIRET 235

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  195 bits (498), Expect = 2e-60
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-----------YEYDLALVRL 231
            Q ++ +G+    + E     Q R V K   HP +N              +  DL L+RL
Sbjct: 45  DQYEVWLGKNKLFQEEPSA--QHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCR 290
             P +    + PI LP + +   G     +GWG ++      P  LQ V + ++ NE C 
Sbjct: 103 SKPADITDVVKPIALP-TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCA 349
            ++      + ++D+ +CAG   GG+D+C+ DSGGPL   G      L G  S+G + C 
Sbjct: 162 KVY-----LQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG-----ILQGTTSYGPVPCG 211

Query: 350 EANLPGVCTRISKFVPWVLDT 370
           +  +P + T + KF  W+ DT
Sbjct: 212 KPGVPAIYTNLIKFNSWIKDT 232

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  197 bits (502), Expect = 2e-60
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 21/195 (10%)

Query: 180 LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAP 239
           LL   I ++      S+           +    VH +Y+    E DL+L+ LE P++   
Sbjct: 97  LLHRNITVKTYFNRTSQDP-----LMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPG 151

Query: 240 NIVPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
             +P+C P  D     L+      ++GW R   G  L   L    V +V  E+C  +   
Sbjct: 152 AGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNV 209

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG 355
                 ++    C         +     G  +  +   G +FL G++             
Sbjct: 210 T-----VTTRTYCER---SSVAAMHWMDGSVV-TREHRGSWFLTGVLGSQ-PVGGQAHMV 259

Query: 356 VCTRISKFVPWVLDT 370
           + T++S++  W    
Sbjct: 260 LVTKVSRYSLWFKQI 274

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  193 bits (493), Expect = 6e-60
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 19/193 (9%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYE---YDLALVRLETPVEFAP 239
            +  +R+G++     ++P   QE  V + + HP YN    E   +D+ L+RL+       
Sbjct: 45  QKYSVRLGDHSLQSRDQPE--QEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGD 102

Query: 240 NIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAGR 298
            + P+ L  +    +G+   ++GWG ++    + P  L    V I S  KC   +     
Sbjct: 103 KVKPVQLA-NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAY----- 156

Query: 299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVC 357
              I++  +CAG    G D+CQGDSGGPL   G      L GI SWG   C +   PGV 
Sbjct: 157 PGKITEGMVCAGSS-NGADTCQGDSGGPLVCDG-----MLQGITSWGSDPCGKPEKPGVY 210

Query: 358 TRISKFVPWVLDT 370
           T+I ++  W+  T
Sbjct: 211 TKICRYTTWIKKT 223

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  193 bits (492), Expect = 8e-60
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 24/196 (12%)

Query: 177 VNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE 236
           +  +    + + +G ++    E   P Q+   V ++    Y+      D+ L++L +P  
Sbjct: 46  LRDIPQRLVNVVLGAHNVRTQE---PTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPAN 102

Query: 237 FAPNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
            + ++  + LP  D  +  G      GWGR+        VLQ++ V +V+          
Sbjct: 103 LSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHN--- 159

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLP 354
                      +C          C GDSGGPL   G      + GI S+ I GCA    P
Sbjct: 160 -----------ICTFVPRRKAGICFGDSGGPLICDG-----IIQGIDSFVIWGCATRLFP 203

Query: 355 GVCTRISKFVPWVLDT 370
              TR++ +V W+  T
Sbjct: 204 DFFTRVALYVDWIRST 219

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  193 bits (493), Expect = 9e-60
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-----------YEYDLALVRL 231
           +  ++ +G  +  K E     Q R V +   HP Y               +  DL L+ L
Sbjct: 43  NNYQVLLGRNNLFKDEPFA--QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHL 100

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPP-VLQKVTVPIVSNEKCR 290
             P +    +  I LP + +  +G     +GWG  +    +    LQ V + ++SNEKC 
Sbjct: 101 SEPADITGGVKVIDLP-TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI 159

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CA 349
             +      + ++D+ +CAG   GG+D+C GDSGGPL   G      L GI S G   CA
Sbjct: 160 ETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG-----VLQGITSGGATPCA 209

Query: 350 EANLPGVCTRISKFVPWVLDT 370
           +   P +  ++ KF  W+   
Sbjct: 210 KPKTPAIYAKLIKFTSWIKKV 230

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  193 bits (492), Expect = 1e-59
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 27/204 (13%)

Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-----------YEYDLALV 229
           ++   ++ +G ++    E     Q   V +   HP +N              Y +DL L+
Sbjct: 43  ISDNYQLWLGRHNLFDDENTA--QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLL 100

Query: 230 RLETPVE-FAPNIVPICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNE 287
           RL  P +     +  + LP +++  +G     +GWG +  E  S P  LQ V + I+ N+
Sbjct: 101 RLTEPADTITDAVKVVELP-TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPND 159

Query: 288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-I 346
           +C+         + ++D  +C G   GG+D+C GDSGGPL   G      L G+ SWG +
Sbjct: 160 ECKKAH-----VQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-----VLQGVTSWGYV 209

Query: 347 GCAEANLPGVCTRISKFVPWVLDT 370
            C   N P V  R+  +V W+ DT
Sbjct: 210 PCGTPNKPSVAVRVLSYVKWIEDT 233

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  192 bits (489), Expect = 3e-59
 Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 26/201 (12%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT-----------YEYDLALVRL 231
           ++  I +G +     E+    Q   V     HP Y+                +DL L+RL
Sbjct: 45  NKSVILLGRHSLFHPEDTG--QVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRL 102

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCR 290
             P E    +  + LP + +  +G     +GWG +  E    P  LQ V + ++SN+ C 
Sbjct: 103 SEPAELTDAVKVMDLP-TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCA 161

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCA 349
            +       + ++   +CAG   GG+ +C GDSGGPL   G      L GI SWG   CA
Sbjct: 162 QVH-----PQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-----VLQGITSWGSEPCA 211

Query: 350 EANLPGVCTRISKFVPWVLDT 370
               P + T++  +  W+ DT
Sbjct: 212 LPERPSLYTKVVHYRKWIKDT 232

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  194 bits (495), Expect = 4e-59
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
              I ++      S+           +    VH +Y+    E DL+L+ LE P++     
Sbjct: 140 HRNITVKTYFNRTSQDP-----LMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAG 194

Query: 242 VPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG 297
           +P+C P  D     L+      ++GW R   G  L   L    V +V  E+C  +     
Sbjct: 195 LPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQV----- 247

Query: 298 RYEF-ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
                ++    C         +     G  +  +   G +FL G++             +
Sbjct: 248 -LNVTVTTRTYCER---SSVAAMHWMDGSVVTRE-HRGSWFLTGVLGSQ-PVGGQAHMVL 301

Query: 357 CTRISKFVPWV 367
            T++S++  W 
Sbjct: 302 VTKVSRYSLWF 312

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  190 bits (484), Expect = 2e-58
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 26/201 (12%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN-----------FFTYEYDLALVRL 231
              +I +G ++ SK E+    Q   V    + P+++           +    +DL L+RL
Sbjct: 45  DDYQIWLGRHNLSKDEDTA--QFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRL 102

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCR 290
             P      +  + LP + +  +G     +GWG +S         LQ V + + SNEKC 
Sbjct: 103 AQPARITDAVKILDLP-TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA 161

Query: 291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CA 349
             +      E +++  +CA   +     C GDSGG L   G        GI SWG   CA
Sbjct: 162 RAY-----PEKMTEFVLCATHRDDSGSICLGDSGGALICDGV-----FQGITSWGYSECA 211

Query: 350 EANLPGVCTRISKFVPWVLDT 370
           + N   V T++     W+ +T
Sbjct: 212 DFNDNFVFTKVMPHKKWIKET 232

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  189 bits (480), Expect = 2e-53
 Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 14/194 (7%)

Query: 178 NSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF 237
            S   S  K+ +G +    LE     QE  V +  + P         D+AL++L +P   
Sbjct: 607 KSPRPSSYKVILGAHQEVNLEPHV--QEIEVSRLFLEPTRK------DIALLKLSSPAVI 658

Query: 238 APNIVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA 296
              ++P CLP  + ++       +TGWG   +G     +L++  +P++ N+ C       
Sbjct: 659 TDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLN 717

Query: 297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGV 356
           GR   +    +CAG   GG DSCQGDSGGPL V  +  +Y L G+ SWG+GCA  N PGV
Sbjct: 718 GR---VQSTELCAGHLAGGTDSCQGDSGGPL-VCFEKDKYILQGVTSWGLGCARPNKPGV 773

Query: 357 CTRISKFVPWVLDT 370
             R+S+FV W+   
Sbjct: 774 YVRVSRFVTWIEGV 787

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  176 bits (448), Expect = 4e-53
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
             + + +G     +             + + H  +N  TY  D+AL+++   VE+  NI 
Sbjct: 51  VSVVVYLGSAVQYE-----GEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQ 104

Query: 243 PICLPGSDDLL---IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           PI LP  ++L        ATV+GWG+ +       +LQ     ++ N++C   +      
Sbjct: 105 PIRLPSGEELNNKFENIWATVSGWGQSNTD---TVILQYTYNLVIDNDRCAQEY----PP 157

Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCT 358
             I +  +C      G+  C GDSGGP  +     +  L G++S+  G   E+  P   +
Sbjct: 158 GIIVESTICGDTS-DGKSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGKPVGFS 213

Query: 359 RISKFVPWVLD-TG 371
           R++ ++ W+   TG
Sbjct: 214 RVTSYMDWIQQNTG 227

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  170 bits (434), Expect = 4e-52
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 15/157 (9%)

Query: 218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS---LPP 274
           +   Y +DL L+RL++P +    +  + LP  +  L G     +GWG +  G      P 
Sbjct: 2   DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPD 60

Query: 275 VLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDG 334
            +Q V + ++ N  C          + +++  +CAG+  GG+D+C GDSGGPL   G   
Sbjct: 61  EIQCVQLTLLQNTFCADAH-----PDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGM-- 113

Query: 335 RYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
                GI SWG   C  AN P + T++  ++ W+ DT
Sbjct: 114 ---WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  180 bits (459), Expect = 6e-52
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 55/232 (23%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF---------TYEYDLALVRLET 233
             IK+ VG             ++  +   + HP YN            Y+YD+AL++L+ 
Sbjct: 268 HSIKVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKN 317

Query: 234 PVEFAPNIVPICLP-GSDDLLIGENATVTGWGRLSEG------------GSLPPVLQKVT 280
            +++   I PICLP              T   +  E                   L +  
Sbjct: 318 KLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE 377

Query: 281 VPIVSNEK---CRSMFLRAGRYEF-------ISDIFMCAGFDNG--GRDSCQGDSGGPLQ 328
           V I + +K   C      A  Y+        ++  F+C G  +     ++C+GDSGGPL 
Sbjct: 378 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLI 437

Query: 329 VKGKDGRYFLAGIISWGI--GCAEAN--------LPGVCTRISKFVPWVLDT 370
           V  K  R+   G+ISWG+   C                   + + +PW+ + 
Sbjct: 438 VH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 488

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  179 bits (455), Expect = 3e-51
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 55/231 (23%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT---------YEYDLALVRLET 233
           S  ++ VG+            +E  + K ++ P ++ F          Y  D+AL++L  
Sbjct: 273 SLWRVNVGDPKSQ------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQ 326

Query: 234 PVEFAPNIVPICLPGSDDLLI------GENATVTGWGRLSEGGSLPPV--LQKVTVPI-- 283
            V+ + +  PICLP + +  +      G          L++         L    + I  
Sbjct: 327 KVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINL 386

Query: 284 ---VSNEKCRSMFLRAGRY--------EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK 332
              V    C  +  +            E ++D F+C+G        C+G+SGG + ++ +
Sbjct: 387 KMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLE-R 444

Query: 333 DGRYFLAGIISWGI-----GCAEAN------------LPGVCTRISKFVPW 366
             R+F  G++SWG+     G A+ N                   + +  PW
Sbjct: 445 RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPW 495

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  169 bits (429), Expect = 2e-46
 Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 55/232 (23%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF---------TYEYDLALVRLET 233
             IK+ VG             ++  +   + HP YN            Y+YD+AL++L+ 
Sbjct: 510 HSIKVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKN 559

Query: 234 PVEFAPNIVPICLPGSDD------LLIGENATVTGWGRLSEGGS-------LPPVLQKVT 280
            +++   I PICLP ++       L             L                L +  
Sbjct: 560 KLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE 619

Query: 281 VPIVSNEK---CRSMFLRAGRYEF-------ISDIFMCAGFDNG--GRDSCQGDSGGPLQ 328
           V I + +K   C      A  Y+        ++  F+C G  +     ++C+GDSGGPL 
Sbjct: 620 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLI 679

Query: 329 VKGKDGRYFLAGIISWGI--GCAEAN--------LPGVCTRISKFVPWVLDT 370
           V  K  R+   G+ISWG+   C                   + + +PW+ + 
Sbjct: 680 VH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 730

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  133 bits (338), Expect = 1e-38
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 270 GSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQV 329
            + P  LQ+ ++P++SN  C+  +        I D  +CAG    G  SC GDSGGPL  
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAG--ASGVSSCMGDSGGPLVC 53

Query: 330 KGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           K K+G + L GI+SWG      + PGV  R++  V WV  T
Sbjct: 54  K-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 84.5 bits (210), Expect = 5e-20
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           T+   +  GE+D     E    Q+  + K   + KYN  T   D+ L++L T   F+  +
Sbjct: 46  TTSDVVVAGEFDQGSSSEKI--QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTV 103

Query: 242 VPICLPGSDDLL-IGENATVTGWGRL 266
             +CLP + D    G     TGWG  
Sbjct: 104 SAVCLPSASDDFAAGTTCVTTGWGLT 129

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 29/153 (18%)

Query: 201 YPYQERGVVKKMVHPKY-NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENAT 259
                  + +  V   Y N    +YD A+++ +T +     +    +    +L  G    
Sbjct: 72  AVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLT-GTTIK 128

Query: 260 VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSC 319
           ++G+       +      +++  +   +   + +                       D+ 
Sbjct: 129 ISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY---------------------TIDTF 167

Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEAN 352
            G+SG  +     D    + G+ + G      N
Sbjct: 168 SGNSGSAML----DQNQQIVGVHNAGYSNGTIN 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	422
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	100.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.98
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.97
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.96
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.96
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.95
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.95
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.95
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.95
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.91
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.9
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.9
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.87
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.82
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.78
3k6y_A	237	Serine protease, possible membrane-associated seri	99.74
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.68
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.66
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.64
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.62
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.58
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.56
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.53
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.5
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.44
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.43
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.35
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.24
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.17
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	99.14
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.05
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.01
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	98.96
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.93
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	98.93
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	98.92
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.91
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	98.91
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	98.91
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	98.9
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	98.88
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	98.88
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	98.88
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	98.87
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	98.86
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	98.86
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	98.86
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	98.86
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	98.86
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	98.84
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	98.84
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	98.84
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	98.84
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	98.84
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	98.83
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	98.83
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	98.83
1aut_C	250	Activated protein C; serine proteinase, plasma cal	98.82
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	98.82
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	98.81
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	98.81
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	98.81
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	98.8
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	98.79
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	98.79
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	98.78
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	98.78
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	98.77
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	98.77
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	98.76
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	98.75
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	98.75
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.75
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	98.74
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	98.73
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	98.72
1md8_A	329	C1R complement serine protease; innate immunity, a	98.69
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	98.68
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	98.68
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.65
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	98.64
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	98.64
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	98.63
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	98.62
1gpz_A	399	Complement C1R component; hydrolase, activation, i	98.61
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	98.61
1elv_A	333	Complement C1S component; trypsin-like serin prote	98.6
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	98.59
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.59
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	98.58
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	98.58
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	98.57
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	98.57
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	98.56
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	98.54
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	98.53
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	98.53
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	98.53
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.52
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	98.52
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	98.52
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	98.52
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	98.51
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	98.5
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	98.5
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	98.5
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	98.5
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	98.49
2aiq_A	231	Protein C activator; snake venom serine proteinase	98.48
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	98.48
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	98.48
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	98.47
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	98.46
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	98.45
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	98.45
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	98.44
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	98.43
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	98.42
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	98.41
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	98.4
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	98.39
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	98.38
1a7s_A	225	Heparin binding protein; serine protease homolog,	98.33
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	98.32
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	98.32
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	98.32
3hrz_D	741	Complement factor B; serine protease, glycosilated	98.3
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.29
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	98.28
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	98.2
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	98.15
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	98.06
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.89
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	97.87
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	96.91
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	96.82
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	96.78
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	96.69
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	96.28
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	96.21
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	95.91
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	94.35
2ikd_A	66	Prophenoloxidase activating proteinase-2; beta-she	93.99
2ike_A	54	Prophenoloxidase activating proteinase-2; beta-she	92.71
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	92.17
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	92.13
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	90.96
1hpg_A	187	Glutamic acid specific protease; serine protease,	90.66
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	87.74
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	86.16
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	82.9

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=2.2e-54  Score=426.49  Aligned_cols=241  Identities=29%  Similarity=0.559  Sum_probs=203.7

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecC--------CCCceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeecccCCC
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESL--------GRPVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSKLEE  199 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~--------~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~~~~  199 (422)
                      .++.++.  ..|..++|||||+|+...        .++|+|+||+++||||||||+.+...  ..+.|++|+++.....+
T Consensus       128 ~rIvgG~--~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~  205 (394)
T 2b9l_A          128 FKITGQT--NEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKE  205 (394)
T ss_dssp             CEEESCS--SBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEESCCBTTCCCS
T ss_pred             ceeeCCc--cccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEEeceeeccCCcC
Confidence            4566653  568899999999998642        35799999999999999999976433  67999999998876554


Q ss_pred             CCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC--CCCCCCce
Q psy15052        200 PYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG--GSLPPVLQ  277 (422)
Q Consensus       200 ~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~--~~~~~~L~  277 (422)
                      ..+.+.+.|+++++||+|+.....||||||||++|+.|+++|+|||||.......+..++++|||.+..+  +..+..|+
T Consensus       206 ~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t~~~~~~~~s~~L~  285 (394)
T 2b9l_A          206 RLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILK  285 (394)
T ss_dssp             SSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTTTTTCTTSSCCBCE
T ss_pred             CCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCccCCCCCcccccce
Confidence            4346899999999999999988899999999999999999999999998765566789999999987654  24578999


Q ss_pred             EEEEeccChhhHHHHHhhc--CCcccccCceEEEeecCCCCCCCcCCCCCCceee--cCCCcEEEeeEEeecccccCCCC
Q psy15052        278 KVTVPIVSNEKCRSMFLRA--GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK--GKDGRYFLAGIISWGIGCAEANL  353 (422)
Q Consensus       278 ~~~v~v~~~~~C~~~~~~~--~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~--~~~~~~~lvGV~S~g~~C~~~~~  353 (422)
                      ++.+++++.++|+..+...  +....+.+.||||+.. .+.++|+|||||||++.  +.+++|+|+||+|||.+|+..+.
T Consensus       286 ~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~-~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~  364 (394)
T 2b9l_A          286 KIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENV  364 (394)
T ss_dssp             EEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCB-SSCSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSS
T ss_pred             EEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCC-CCCcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCC
Confidence            9999999999999888642  1112378899999854 46799999999999996  24579999999999999998889


Q ss_pred             CceeeecccccccccccCCC
Q psy15052        354 PGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       354 p~vyt~V~~y~~WI~~~i~~  373 (422)
                      |+|||||++|++||+++|+.
T Consensus       365 PgVYT~V~~y~~WI~~~i~~  384 (394)
T 2b9l_A          365 PGVYANVAHFRNWIDQEMQA  384 (394)
T ss_dssp             CEEEEEGGGGHHHHHHHHHH
T ss_pred             CeEEEEHHHhHHHHHHHHHh
Confidence            99999999999999999864

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=8.7e-55  Score=431.23  Aligned_cols=237  Identities=30%  Similarity=0.495  Sum_probs=201.5

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCC------
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEE------  199 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~------  199 (422)
                      .++.++   .+|.+++|||||+|++..    .++|+|+||+++||||||||+.+.....+.|++|++++....+      
T Consensus       117 ~rIvgG---~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~  193 (408)
T 2xxl_A          117 QRVSNG---YEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGR  193 (408)
T ss_dssp             CCCCSS---CBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTTCTTTEEEEEESCSBTTCSCCEEEETT
T ss_pred             CceECC---EECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCCCCCceEEEEeeeeECCCccchhhccc
Confidence            456666   778899999999998632    3579999999999999999998765678999999998765442      


Q ss_pred             ----CCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCCC
Q psy15052        200 ----PYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGS  271 (422)
Q Consensus       200 ----~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~~  271 (422)
                          ..+.+.+.|+++++||+|+.....||||||||++|+.|+++|+|||||....    ...+..++++|||.+..+. 
T Consensus       194 ~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~-  272 (408)
T 2xxl_A          194 KKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS-  272 (408)
T ss_dssp             EEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBC-
T ss_pred             ccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCcCCCCC-
Confidence                1236889999999999999988899999999999999999999999997643    3568899999999887654 


Q ss_pred             CCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCc------eeecCCCcEEEeeEEeec
Q psy15052        272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPL------QVKGKDGRYFLAGIISWG  345 (422)
Q Consensus       272 ~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPL------v~~~~~~~~~lvGV~S~g  345 (422)
                      .+..|+++.+++++.++|+..|...     +...||||+... +.++|+|||||||      ++. .+++|+|+||+|||
T Consensus       273 ~s~~L~~~~v~iv~~~~C~~~~~~~-----~~~~~iCAg~~~-g~d~C~GDSGGPL~~~~~~~~~-~~~~~~l~GIvS~G  345 (408)
T 2xxl_A          273 SSDVLLQANVPLQPRSACSQAYRRA-----VPLSQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGE-YAPKMVEFGIVSQG  345 (408)
T ss_dssp             SCSBCEEEEEEEECHHHHHHHHTSC-----CCTTEEEECCSC-SSSGGGSCTTCEEEEEECCTTC-SSCEEEEEEEEEEC
T ss_pred             CCchheEeeeeecCHHHHHHHhccc-----CCCceEeecCCC-CCccCCCcccChhhcCccceEE-ECCEEEEEEEEEEC
Confidence            6889999999999999999988542     455899998543 6799999999999      544 46799999999999


Q ss_pred             -ccccCCCCCceeeecccccccccccCCCCCCc
Q psy15052        346 -IGCAEANLPGVCTRISKFVPWVLDTGDSGGPL  377 (422)
Q Consensus       346 -~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~pl  377 (422)
                       .+|+..+.|+|||||++|++||+++++..+.+
T Consensus       346 ~~~Cg~~~~PgVYTrVs~y~~WI~~~i~~~~~~  378 (408)
T 2xxl_A          346 VVTCGQISLPGLYTNVGEYVQWITDTMASNGLL  378 (408)
T ss_dssp             CCCTTSCCCCEEEEEGGGGHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHHhhcCcc
Confidence             78998889999999999999999998765443

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=9.7e-52  Score=381.78  Aligned_cols=225  Identities=38%  Similarity=0.642  Sum_probs=196.9

Q ss_pred             CCCCCCCcCeEEEEEec--CC--CCceEEEccCCEEeecccCcCCC---CCceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        139 SSKNTTQRPYVKPLKES--LG--RPVNVYSNNEKVDDFSTESVNSL---LTSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~--~~--~~C~GtLIs~~~VLTAAhCv~~~---~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      ..|.+++|||||+|+..  .+  ++|+|+||+++||||||||+.+.   ....+.|++|.++......  ..+.+.|+++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i   82 (237)
T 2f91_A            5 TDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEG--SEQIITVSKI   82 (237)
T ss_dssp             EECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCS--CCEEEEEEEE
T ss_pred             cCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCCCC--ccEEEEEEEE
Confidence            56788999999999864  22  35999999999999999999764   4567999999988764332  2588999999


Q ss_pred             EECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      ++||+|+.....||||||||++|+.|+++++|||||.... ..+..++++|||.+..++..+..|+++.+++++.++|+.
T Consensus        83 ~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  161 (237)
T 2f91_A           83 ILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-TATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA  161 (237)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-CCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred             EECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCC-CCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHhhh
Confidence            9999999888899999999999999999999999997654 568899999999988777778899999999999999998


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                      .+..    ..+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++|
T Consensus       162 ~~~~----~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          162 DYGA----DEILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             HHCT----TTSCTTEEEECCTTCCCBCCTTCTTCEEEEC-TTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             hhCC----CCcCCCeEEEecCCCCCCCCCCcCCCCeEEe-cCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            8752    1378899999876667899999999999997 6789999999999999998889999999999999999876

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=1.5e-51  Score=381.35  Aligned_cols=228  Identities=34%  Similarity=0.594  Sum_probs=201.7

Q ss_pred             CCCCCCCcCeEEEEEecCC-CCceEEEccCCEEeecccCcCCC------CCceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLG-RPVNVYSNNEKVDDFSTESVNSL------LTSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~-~~C~GtLIs~~~VLTAAhCv~~~------~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      .+|.+++|||+|+|+.... ++|+|+||+++||||||||+.+.      ....+.|++|.++....... ..+.+.|+++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~-~~~~~~v~~i   83 (241)
T 3ncl_A            5 TDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAP-GVQERRLKRI   83 (241)
T ss_dssp             EECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTST-TCEEEEEEEE
T ss_pred             eECCCCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCC-CceEEEEEEE
Confidence            5678899999999987654 67999999999999999999652      34678999999887654332 2588999999


Q ss_pred             EECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHH
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~  290 (422)
                      ++||+|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+.+++.+.|+
T Consensus        84 ~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~  163 (241)
T 3ncl_A           84 ISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCE  163 (241)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHHHHH
T ss_pred             EECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECHHHhh
Confidence            9999999988899999999999999999999999998664 347899999999998877777889999999999999999


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      ..+..     .+.+.|||++...++.+.|+|||||||++.+.+++|+|+||+|||.+|+..+.|++||||+.|++||+++
T Consensus       164 ~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~  238 (241)
T 3ncl_A          164 NLLPQ-----QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN  238 (241)
T ss_dssp             HHSTT-----TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHH
T ss_pred             hhccc-----CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            88754     3788999999777788999999999999887889999999999999999888999999999999999988


Q ss_pred             CC
Q psy15052        371 GD  372 (422)
Q Consensus       371 i~  372 (422)
                      ++
T Consensus       239 ~~  240 (241)
T 3ncl_A          239 TG  240 (241)
T ss_dssp             HC
T ss_pred             hC
Confidence            64

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=5.9e-52  Score=383.41  Aligned_cols=228  Identities=31%  Similarity=0.546  Sum_probs=200.2

Q ss_pred             CCCCCCCcCeEEEEEecC--CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKESL--GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..+.+++|||+|+|+..+  .++|+|+||+++||||||||+.......+.|++|.++......  ..+.+.|+++++||+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~   82 (238)
T 1ym0_A            5 IEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAAST--VRQTHDVDSIFVNEN   82 (238)
T ss_dssp             EECCTTSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTCCGGGEEEEESCSBTTSCCS--SCEEEEEEEEEECTT
T ss_pred             EECCCCccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCCCCceEEEEEcccccCCCCC--CceEEEEEEEEECCC
Confidence            567889999999999765  5689999999999999999998766678999999988765543  258899999999999


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCC-CCCceEEEEeccChhhHHHHHhh
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSL-PPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~-~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      |+.....||||||||++|+.|+++++|||||.......+..++++|||.+...+.. +..|+++.+++++.++|+..+..
T Consensus        83 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  162 (238)
T 1ym0_A           83 YDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS  162 (238)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHCTT
T ss_pred             CCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhhcc
Confidence            99988899999999999999999999999998765447889999999988766554 78899999999999999987753


Q ss_pred             cCCcccccCceEEEeecCCC--CCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGG--RDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~--~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .    .+.+.||||+...+.  .+.|+|||||||++.+.+++|+|+||+|||.+|+ .+.|++||||+.|++||+++|+.
T Consensus       163 ~----~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~~  237 (238)
T 1ym0_A          163 D----TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTITN  237 (238)
T ss_dssp             S----CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHHC
T ss_pred             c----ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhcC
Confidence            2    378899999865544  7899999999999986679999999999999998 78899999999999999998864

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=1.6e-51  Score=379.81  Aligned_cols=228  Identities=32%  Similarity=0.552  Sum_probs=201.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC--CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS--LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..+.+++|||+|+|+..+.++|+|+||+++||||||||+.+  .....+.|++|.++....... ..+.+.|+++++||+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~-~~~~~~v~~i~~hp~   83 (235)
T 4dgj_A            5 SDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSP-QTVPRLIDEIVINPH   83 (235)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCT-TCEEEEEEEEEECTT
T ss_pred             ccCCCCCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCC-ceeEEeEEEEEECCC
Confidence            56788999999999988778899999999999999999965  345678999998876544332 257788999999999


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhh
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      |+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+..
T Consensus        84 y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~  163 (235)
T 4dgj_A           84 YNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPE  163 (235)
T ss_dssp             CBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHHHHCTT
T ss_pred             CCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhhhhccC
Confidence            99999999999999999999999999999998764 45789999999999887777789999999999999999988754


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      .    .+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++|+
T Consensus       164 ~----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          164 Y----NITENMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             S----CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             c----cCCCCeEeecCCCCCCccCCCCCCCeEEEE-ECCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            2    378899999877778899999999999998 57899999999999999988899999999999999999875

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=2.7e-51  Score=377.62  Aligned_cols=225  Identities=27%  Similarity=0.484  Sum_probs=196.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|+..+.++|+|+||+++||||||||+... ....+.|++|.....      ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~~~~------~~~~~~v~~i~~hp~y   78 (232)
T 2oq5_A            5 TEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKP------SKMKRGLRRIIVHEKY   78 (232)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSBSTT------CSEEEEEEEEEECTTC
T ss_pred             EECCCCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeEECC------CceEEeEEEEEeCCCC
Confidence            567889999999999877788999999999999999999763 346789999976421      2478899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+...
T Consensus        79 ~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~  158 (232)
T 2oq5_A           79 KHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYN  158 (232)
T ss_dssp             CTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTT
T ss_pred             CCCCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccC
Confidence            9988899999999999999999999999997654 446889999999998776677889999999999999998754322


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                         ..+.+.||||+...+..+.|+|||||||++.+.+++|+|+||+|||.+|+..+.|++||||+.|++||+++++
T Consensus       159 ---~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          159 ---DAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             ---TCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             ---CccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence               1378899999976667899999999999998778999999999999999888899999999999999998764

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.4e-51  Score=384.67  Aligned_cols=233  Identities=29%  Similarity=0.498  Sum_probs=201.9

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|+..+.++|+||||+++||||||||+.... ...+.|++|.+++......  .+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y   82 (254)
T 2bz6_H            5 KVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGD--EQSRRVAQVIIPSTY   82 (254)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSC--CEEEEEEEEEEETTC
T ss_pred             EECCCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCcccCCCCCC--cEEEEEEEEEECCCC
Confidence            5678899999999997766789999999999999999997643 3579999999987654432  588999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +.....||||||||++|+.|+++++|||||....    ...+..++++|||.+...+..+..|+++.+++++.++|...+
T Consensus        83 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  162 (254)
T 2bz6_H           83 VPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQS  162 (254)
T ss_dssp             CTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHS
T ss_pred             CCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHHhhhh
Confidence            9988899999999999999999999999997542    235789999999998776677889999999999999999877


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ........+.+.||||+...+..+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       163 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~-~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  241 (254)
T 2bz6_H          163 RKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS  241 (254)
T ss_dssp             CCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTS
T ss_pred             hccccCCccCCCEEeecCCCCCCccccccCCCceEEe-ECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            5432222478899999866667899999999999997 578999999999999999888999999999999999999975


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       242 ~  242 (254)
T 2bz6_H          242 E  242 (254)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=8.7e-52  Score=382.33  Aligned_cols=228  Identities=29%  Similarity=0.573  Sum_probs=198.2

Q ss_pred             CCCCCCCcCeEEEEEec---CCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKES---LGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+..   ..++|+|+||+++||||||||+... ....+.|++|.++.....+.  .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~H   82 (238)
T 3bg8_A            5 TASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKED--TSFFGVQEIIIH   82 (238)
T ss_dssp             EECCTTSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGCCTT--SCCEEEEEEEEC
T ss_pred             eECCCCCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcCCCC--ceEEeeEEEEEC
Confidence            56789999999999874   3467999999999999999999764 34678999999887654332  567899999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.|+++++|||||...+ ...+..++++|||.+...+..+..|+++.+++++.++|+..+
T Consensus        83 p~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  162 (238)
T 3bg8_A           83 DQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY  162 (238)
T ss_dssp             TTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHHHC
T ss_pred             CCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhhhh
Confidence            9999888889999999999999999999999997653 456889999999998776667889999999999999999877


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ...    .+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       163 ~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          163 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             TTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             cCC----CCCCCeEeecCCCCCCCcCCCCCCcceEEE-ECCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            432    278899999876667899999999999998 478999999999999998888999999999999999998753

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=7.4e-51  Score=384.85  Aligned_cols=236  Identities=28%  Similarity=0.530  Sum_probs=199.0

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecC-----CCCceEEEccCCEEeecccCcCCC----CCceEEEEEeeeecccCCC-
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESL-----GRPVNVYSNNEKVDDFSTESVNSL----LTSQIKIRVGEYDFSKLEE-  199 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTAAhCv~~~----~~~~~~V~lG~~~~~~~~~-  199 (422)
                      .++.++   ..|.+++|||||+|+...     .++|+|+||+++||||||||+.+.    ....+.|++|.++.....+ 
T Consensus        21 ~rIvgG---~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~   97 (278)
T 2olg_A           21 DKILNG---DDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDC   97 (278)
T ss_dssp             CCSCCS---SBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCE
T ss_pred             CceECC---EECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcccCCCCccc
Confidence            356666   678899999999998653     357999999999999999999752    1346899999988765432 


Q ss_pred             --------CCCcEEEeEEEEEECCCCCCCCC--CCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCC
Q psy15052        200 --------PYPYQERGVVKKMVHPKYNFFTY--EYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSE  268 (422)
Q Consensus       200 --------~~~~~~~~V~~i~iHp~y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~  268 (422)
                              ....+.+.|+++++||+|+....  .||||||||++|+.|+++++|||||.... ...+..++++|||.+..
T Consensus        98 ~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~~  177 (278)
T 2olg_A           98 YGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTET  177 (278)
T ss_dssp             ETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSS
T ss_pred             cccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCcCCC
Confidence                    11357899999999999987664  79999999999999999999999998764 45789999999998865


Q ss_pred             CCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccc
Q psy15052        269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGC  348 (422)
Q Consensus       269 ~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C  348 (422)
                      + ..+..|+++.+++++.++|+..+...+.  .+.+.||||+.. .+.++|+|||||||++.+.+++|+|+||+|||.+|
T Consensus       178 ~-~~~~~l~~~~~~i~~~~~C~~~~~~~~~--~~~~~~~Ca~~~-~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~~C  253 (278)
T 2olg_A          178 G-QYSTIKQKLAVPVVHAEQCAKTFGAAGV--RVRSSQLCAGGE-KAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATC  253 (278)
T ss_dssp             C-CCCSBCEEEEEEBCCGGGGGGGGSSTTC--CCCTTEEEECCT-TCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECCBC
T ss_pred             C-CccchhhcccccccCHHHHHHHhccccc--cCCCceEeeecC-CCCeeCCCccCcceEEEcCCCcEEEEEEEEECCCC
Confidence            3 4678899999999999999987753221  378899999854 36899999999999998667899999999999999


Q ss_pred             cCCCCCceeeecccccccccccCC
Q psy15052        349 AEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       349 ~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      +..+.|+|||||+.|++||+++|+
T Consensus       254 ~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          254 GTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             STTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             CCCCCCcEEeEHHHHHHHHHHhhC
Confidence            988899999999999999999986

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=7e-51  Score=377.88  Aligned_cols=227  Identities=30%  Similarity=0.521  Sum_probs=195.6

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVV  209 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~  209 (422)
                      ++.++   ..|.+++|||+|+|+.. +.++|+|+||+++||||||||+..   ..+.|++|.++.....+.  .+.+.|.
T Consensus        15 rIvgG---~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~--~~~~~v~   86 (245)
T 1t8o_A           15 RIVNG---EEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSSEK--IQKLKIA   86 (245)
T ss_dssp             -CBTC---EECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCC---TTSEEEESCSBTTCSSSC--CEEEEEE
T ss_pred             ceECC---EECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcC---CCcEEEEeeeecCCCCCC--cEEEEEE
Confidence            45555   66889999999999874 346799999999999999999975   456899999887654332  5889999


Q ss_pred             EEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCC-CCCCceEEEEeccChh
Q psy15052        210 KKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNE  287 (422)
Q Consensus       210 ~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~~~  287 (422)
                      ++++||+|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+. .+..|+++.+++++.+
T Consensus        87 ~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~  166 (245)
T 1t8o_A           87 KVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNT  166 (245)
T ss_dssp             EEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHH
T ss_pred             EEEeCCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcch
Confidence            999999999988899999999999999999999999997654 45789999999998875543 5788999999999999


Q ss_pred             hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       288 ~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      +|++.+..     .+.+.|||++  ..+.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||
T Consensus       167 ~C~~~~~~-----~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~-~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI  238 (245)
T 1t8o_A          167 NCKKYWGT-----KIKDAMICAG--ASGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWV  238 (245)
T ss_dssp             HHHHHHGG-----GCCTTEEEEE--CSSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHH
T ss_pred             hhhHhhcC-----cCCCceEEcc--CCCCccCcccCcCCEEEE-ECCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHH
Confidence            99998754     3788999998  456789999999999998 478999999999999998888999999999999999


Q ss_pred             cccCCC
Q psy15052        368 LDTGDS  373 (422)
Q Consensus       368 ~~~i~~  373 (422)
                      +++++.
T Consensus       239 ~~~~~~  244 (245)
T 1t8o_A          239 QQTLAA  244 (245)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            998764

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=4.4e-51  Score=378.34  Aligned_cols=227  Identities=28%  Similarity=0.488  Sum_probs=195.2

Q ss_pred             CCCCCCCcCeEEEEEecC-C---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL-G---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||||+|+... +   ++|+|+||+++||||||||+..  ...+.|++|.+++.....  ..+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~H   80 (241)
T 1bru_P            5 EDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--SRTYRVVLGRHSLSTNEP--GSLAVKVSKLVVH   80 (241)
T ss_dssp             EECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--TSCEEEEESCSBSSSCCT--TCEEEEEEEEEEC
T ss_pred             eECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhccc--CCceEEEEEcccccCCCC--ccEEEEEEEEEEC
Confidence            567889999999998642 2   6799999999999999999973  467899999988765433  2588999999999


Q ss_pred             CCCCCCCCC--CceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYE--YDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~--nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+.....  ||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|++
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~  160 (241)
T 1bru_P           81 QDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSK  160 (241)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTS
T ss_pred             CCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCc
Confidence            999987777  9999999999999999999999998764 4568899999999987766778899999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...   ..+.+.||||+ ..+..+.|+|||||||++...+++|+|+||+|||.  +|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~---~~~~~~~~Ca~-~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  236 (241)
T 1bru_P          161 PGWWG---STVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS  236 (241)
T ss_dssp             TTTTG---GGCCTTEEEEC-CSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             ccccC---CcCCCceEeec-CCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHH
Confidence            53211   13788999998 45567999999999999986688999999999997  79877899999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      +|+.
T Consensus       237 ~i~~  240 (241)
T 1bru_P          237 VIAN  240 (241)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8753

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=1.1e-50  Score=377.63  Aligned_cols=229  Identities=27%  Similarity=0.494  Sum_probs=200.0

Q ss_pred             CCCCCCCcCeEEEEEe-cCCCCceEEEccCCEEeecccCcCC--------------CCCceEEEEEeeeecccCCCCCCc
Q psy15052        139 SSKNTTQRPYVKPLKE-SLGRPVNVYSNNEKVDDFSTESVNS--------------LLTSQIKIRVGEYDFSKLEEPYPY  203 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTAAhCv~~--------------~~~~~~~V~lG~~~~~~~~~~~~~  203 (422)
                      ..|.+++|||+|+|.. .+.++|+|+||+++||||||||+..              .....+.|++|.++......  ..
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~--~~   82 (251)
T 3gov_B            5 RPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDE--NE   82 (251)
T ss_dssp             EECCTTSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCS--SC
T ss_pred             EECCCCCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCCCC--cc
Confidence            5678899999999987 4456899999999999999999965              34568999999988754433  25


Q ss_pred             EEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEec
Q psy15052        204 QERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPI  283 (422)
Q Consensus       204 ~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v  283 (422)
                      +.+.|+++++||+|+.....||||||||++|+.|+++++|||||.... ..+..++++|||.+..+ ..+..|+++.+++
T Consensus        83 ~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~-~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~  160 (251)
T 3gov_B           83 QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQ-QEGAMVIVSGWGKQFLQ-RFPETLMEIEIPI  160 (251)
T ss_dssp             EEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC-CTTCEEEEEECSCCTTS-CCCSBCEEEEEEE
T ss_pred             eEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCC-CCCCEEEEEcCCCCCCC-CCCccceEEeeEE
Confidence            889999999999999989999999999999999999999999997764 67899999999987654 4678999999999


Q ss_pred             cChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeec-CCCcEEEeeEEeecccccCCCCCceeeeccc
Q psy15052        284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISK  362 (422)
Q Consensus       284 ~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~  362 (422)
                      ++.++|+..+....  ..+.+.|||++...++.+.|+|||||||++.+ .+++|+|+||+|||.+|+..+.|++||||++
T Consensus       161 ~~~~~C~~~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~  238 (251)
T 3gov_B          161 VDHSTCQKAYAPLK--KKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHH  238 (251)
T ss_dssp             ECHHHHHHHTTTTT--CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTT
T ss_pred             ECHHHhhhhhhhcc--CCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHH
Confidence            99999999876432  23788999998777778999999999999974 6789999999999999998889999999999


Q ss_pred             ccccccccCCC
Q psy15052        363 FVPWVLDTGDS  373 (422)
Q Consensus       363 y~~WI~~~i~~  373 (422)
                      |++||+++++.
T Consensus       239 ~~~WI~~~~~~  249 (251)
T 3gov_B          239 NKDWIQRVTGV  249 (251)
T ss_dssp             THHHHHHHHCC
T ss_pred             hHHHHHHHhcc
Confidence            99999998864

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=3.1e-51  Score=377.89  Aligned_cols=225  Identities=33%  Similarity=0.580  Sum_probs=196.9

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|.....++|+|+||+++||||||||+..  ...+.|++|.++......  ..+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~--~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~   80 (235)
T 2wph_S            5 EDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEH--TEQKRNVIRIIPHHNFN   80 (235)
T ss_dssp             EECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCT--TSCCEEEESCCBTTSCCS--CCEEEEEEEEEECTTTT
T ss_pred             EECCCCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcC--CCCEEEEEcccccCCCCC--CcEEeeeEEEEeCCCCc
Confidence            56889999999999977778899999999999999999975  346899999988765443  25889999999999999


Q ss_pred             C--CCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        219 F--FTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       219 ~--~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      .  ....||||||||++|+.|+++++|||||....   ...+..++++|||.+...+..+..|+++.+++++.++|++.+
T Consensus        81 ~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  160 (235)
T 2wph_S           81 AAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST  160 (235)
T ss_dssp             SSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHHTC
T ss_pred             ccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcCcc
Confidence            7  67789999999999999999999999987542   234788999999998776777889999999999999998866


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..     .+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       161 ~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          161 KF-----TITNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             SS-----CCCTTEEEESCTTCSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             cC-----CCCCCEEEeCCCCCCCccCCCCCCCceEEe-ECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            42     378899999866667899999999999997 578999999999999999888999999999999999999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=4e-51  Score=378.59  Aligned_cols=229  Identities=31%  Similarity=0.587  Sum_probs=198.6

Q ss_pred             CCCCCCCcCeEEEEEec---CCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKES---LGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+..   ..++|+|+||+++||||||||+.+.. ...+.|++|..+.......  .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~H   82 (241)
T 2any_A            5 TESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKD--TPFSQIKEIIIH   82 (241)
T ss_dssp             EECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCSBGGGCCTT--SCCBCEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeeeeccccccC--ceEEeeEEEEEC
Confidence            56789999999999863   34679999999999999999997643 3568999999887654332  467789999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.|+++++|||||...+ ...+..++++|||.+...+..+..|+++.+++++.+.|+..+
T Consensus        83 p~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  162 (241)
T 2any_A           83 QNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY  162 (241)
T ss_dssp             TTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHTTS
T ss_pred             CCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhhHh
Confidence            9999888899999999999999999999999997654 456889999999998776667889999999999999999876


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ...    .+.+.|||++...++.+.|.|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       163 ~~~----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  237 (241)
T 2any_A          163 QDY----KITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS  237 (241)
T ss_dssp             CTT----CSCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             ccC----CCCcCcEeecCCCCCCccCCCCCCCcEEEE-ECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhc
Confidence            432    278899999876667899999999999998 478999999999999998888899999999999999999875


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       238 ~  238 (241)
T 2any_A          238 S  238 (241)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=4.2e-51  Score=380.53  Aligned_cols=227  Identities=29%  Similarity=0.561  Sum_probs=194.0

Q ss_pred             CCCCCCCcCeEEEEEecC-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESL-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|+... .++|+|+||+++||||||||+..  ...+.|++|.+++......  .+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y   80 (250)
T 1aut_C            5 KMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHPNY   80 (250)
T ss_dssp             EECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSS--CSCCEEEESCCBTTCCCTT--CEEEEEEEEEECTTC
T ss_pred             EECCCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCC--CCceEEEEcccccCCCCCc--cEEEEEEEEEECCCC
Confidence            568899999999998653 45799999999999999999975  3568899999887654432  578999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-----CCCCCeEEEEEecccCCCCCCC-----CCceEEEEeccChh
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-----LLIGENATVTGWGRLSEGGSLP-----PVLQKVTVPIVSNE  287 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-----~~~~~~~~v~GwG~~~~~~~~~-----~~L~~~~v~v~~~~  287 (422)
                      +.....||||||||++|+.|+++++|||||....     ...+..++++|||.+...+...     ..|+++.+++++.+
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~  160 (250)
T 1aut_C           81 SKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHN  160 (250)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHH
T ss_pred             CCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHH
Confidence            9988899999999999999999999999997531     2468899999999876544332     47999999999999


Q ss_pred             hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       288 ~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      +|+..+..     .+.+.||||+...+..+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||
T Consensus       161 ~C~~~~~~-----~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~-~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  234 (250)
T 1aut_C          161 ECSEVMSN-----MVSENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI  234 (250)
T ss_dssp             HHHHHCSS-----CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHH
T ss_pred             HhhHHhcc-----CCCCCEEEeCCCCCCCCCCCCCCchheEEE-ECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHH
Confidence            99987643     378899999866667899999999999997 578999999999999999888999999999999999


Q ss_pred             cccCCCCC
Q psy15052        368 LDTGDSGG  375 (422)
Q Consensus       368 ~~~i~~~~  375 (422)
                      +++++...
T Consensus       235 ~~~~~~~~  242 (250)
T 1aut_C          235 HGHIRDKE  242 (250)
T ss_dssp             HHHHC---
T ss_pred             HHHhhccc
Confidence            99997543

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=1.2e-50  Score=385.46  Aligned_cols=232  Identities=29%  Similarity=0.457  Sum_probs=195.5

Q ss_pred             CCCCCCCcCeEEEEEec---C---CCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCC---CCCcEEEeE
Q psy15052        139 SSKNTTQRPYVKPLKES---L---GRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEE---PYPYQERGV  208 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~---~---~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~---~~~~~~~~V  208 (422)
                      ..|.+++|||||+|+..   .   .++|+|+||+++||||||||+... ....+.|++|.+++.....   ....+.+.|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V   84 (290)
T 1fiw_A            5 QDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYV   84 (290)
T ss_dssp             EECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEE
T ss_pred             EECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEE
Confidence            56889999999999853   1   357999999999999999999763 3467899999987653221   123588999


Q ss_pred             EEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC--CCCCCeEEEEEecccCCCCC-CCCCceEEEEeccC
Q psy15052        209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD--LLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVS  285 (422)
Q Consensus       209 ~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~--~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~  285 (422)
                      +++++||+|+.....||||||||++|+.|+++|+|||||....  ...+..++++|||.+..++. .+..|+++.+++++
T Consensus        85 ~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  164 (290)
T 1fiw_A           85 EKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLID  164 (290)
T ss_dssp             EEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEec
Confidence            9999999999988899999999999999999999999997543  23588999999998876543 46789999999999


Q ss_pred             hhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecC-CCcEEEeeEEeecccccCCCCCceeeeccccc
Q psy15052        286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFV  364 (422)
Q Consensus       286 ~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~-~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~  364 (422)
                      .++|+..+...   ..+.+.||||+...++.+.|+|||||||++.+. +++|+|+||+|||.+|+..+.|+|||||++|+
T Consensus       165 ~~~C~~~~~~~---~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~  241 (290)
T 1fiw_A          165 LGLCNSTRWYN---GRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYL  241 (290)
T ss_dssp             HHHHTSTTTTT---TCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGH
T ss_pred             HHHhccccccC---CcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhH
Confidence            99998643211   137889999997667789999999999999853 78999999999999999888999999999999


Q ss_pred             ccccccCCC
Q psy15052        365 PWVLDTGDS  373 (422)
Q Consensus       365 ~WI~~~i~~  373 (422)
                      +||+++++.
T Consensus       242 ~WI~~~~~~  250 (290)
T 1fiw_A          242 NWIASKIGS  250 (290)
T ss_dssp             HHHHHHHCH
T ss_pred             HHHHHHhCc
Confidence            999999875

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=1.5e-50  Score=383.59  Aligned_cols=235  Identities=28%  Similarity=0.485  Sum_probs=199.3

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeE
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGV  208 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V  208 (422)
                      .++.++   ..+.+++|||+|+|+.. .++|+|+||+++||||||||+.+.. ...+.|++|.++......  ..+.+.|
T Consensus        34 ~rIvgG---~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~--~~~~~~v  107 (283)
T 1yc0_A           34 PRIIGG---SSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTD--VTQTFGI  107 (283)
T ss_dssp             --CBSC---EECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCS--SCEEECE
T ss_pred             CceECC---eECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeeeecccCCC--ceEEEee
Confidence            467777   67889999999999875 6789999999999999999997643 467999999988765443  2588999


Q ss_pred             EEEEECCCCCC-CCCCCceEEEEECCC----cccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCC-CCCCCceEEEE
Q psy15052        209 VKKMVHPKYNF-FTYEYDLALVRLETP----VEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGG-SLPPVLQKVTV  281 (422)
Q Consensus       209 ~~i~iHp~y~~-~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v  281 (422)
                      +++++||+|+. ....||||||||++|    +.|+++++|||||.... ...+..++++|||.+..++ ..+..|+++.+
T Consensus       108 ~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v  187 (283)
T 1yc0_A          108 EKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALV  187 (283)
T ss_dssp             EEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEE
T ss_pred             EEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEE
Confidence            99999999997 778899999999999    88999999999997643 4578999999999887554 35788999999


Q ss_pred             eccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecc
Q psy15052        282 PIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS  361 (422)
Q Consensus       282 ~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~  361 (422)
                      ++++.++|+..+...   ..+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+
T Consensus       188 ~i~~~~~C~~~~~~~---~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~-~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~  263 (283)
T 1yc0_A          188 PLVADHKCSSPEVYG---ADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGVYTRVA  263 (283)
T ss_dssp             EBCCHHHHTSTTTTG---GGCCTTEEEESCSSSCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSTTTCTTCCEEEEEGG
T ss_pred             EEECHHHhcCccccC---CcCCCCEEeeCCCCCCCccCCCCCCCceEEE-ECCcEEEEEEEEECCCCCCCCCCeEEEEhh
Confidence            999999998642111   1378899999876667899999999999998 478999999999999999888999999999


Q ss_pred             cccccccccCCCC
Q psy15052        362 KFVPWVLDTGDSG  374 (422)
Q Consensus       362 ~y~~WI~~~i~~~  374 (422)
                      .|++||+++++..
T Consensus       264 ~y~~WI~~~i~~~  276 (283)
T 1yc0_A          264 NYVDWINDRIRPP  276 (283)
T ss_dssp             GGHHHHHHHCC--
T ss_pred             hHHHHHHHHhcCC
Confidence            9999999999753

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=6.4e-51  Score=377.25  Aligned_cols=226  Identities=29%  Similarity=0.524  Sum_probs=195.9

Q ss_pred             CCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|+|+.. ..++|+|+||+++||||||||+...  ..+.|++|.++......  ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~--~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y   80 (241)
T 2jkh_A            5 QECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEG--GEAVHEVEVVIKHNRF   80 (241)
T ss_dssp             EECCTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSC--SSCEEEESCSBTTCCCS--CCEEECEEEEEECTTC
T ss_pred             EECCCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCC--CcEEEEECCccCCCCCC--CcEEEEeEEEEeCCCC
Confidence            56789999999999854 3567999999999999999999753  46889999988765433  2578999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +.....||||||||++|+.|+++++|||||....    ...+..++++|||.+...+..+..|+++.+++++.+.|+..+
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  160 (241)
T 2jkh_A           81 TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS  160 (241)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHC
T ss_pred             CCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhcccc
Confidence            9988899999999999999999999999997542    346889999999998776677889999999999999998776


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..     .+.+.||||+...+..+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       161 ~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (241)
T 2jkh_A          161 SF-----IITQNMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT  234 (241)
T ss_dssp             SS-----CCCTTEEEESCSSSSCBCCTTTTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC-
T ss_pred             cC-----cCCCCeEEeeCCCCCCccCcCcCCCeeEEE-ECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhcc
Confidence            32     378899999866667899999999999997 568999999999999998888999999999999999999976


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       235 ~  235 (241)
T 2jkh_A          235 R  235 (241)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=5e-51  Score=388.06  Aligned_cols=234  Identities=29%  Similarity=0.522  Sum_probs=194.1

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEecC--CCCceEEEccCCEEeecccCcCC------CCCceEEEEEeeeecccCCCCCC
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKESL--GRPVNVYSNNEKVDDFSTESVNS------LLTSQIKIRVGEYDFSKLEEPYP  202 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTAAhCv~~------~~~~~~~V~lG~~~~~~~~~~~~  202 (422)
                      ++.++   ..|.+++|||||+|+...  .++|+||||+++||||||||+..      .....+.|++|.++....... .
T Consensus        30 rIvgG---~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~-~  105 (289)
T 2bdy_A           30 RIVEG---SDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERN-I  105 (289)
T ss_dssp             -CBSC---EECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTT-T
T ss_pred             eEECC---EECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCC-c
Confidence            45555   678899999999998643  45799999999999999999953      235679999999887543322 2


Q ss_pred             cEEEeEEEEEECCCCCC-CCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCC-----CC
Q psy15052        203 YQERGVVKKMVHPKYNF-FTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGG-----SL  272 (422)
Q Consensus       203 ~~~~~V~~i~iHp~y~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~-----~~  272 (422)
                      .+.+.|+++++||+|+. ....||||||||++|+.|+++|+|||||....    ...+..++++|||.+....     ..
T Consensus       106 ~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~  185 (289)
T 2bdy_A          106 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKG  185 (289)
T ss_dssp             CEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------C
T ss_pred             ceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCcccc
Confidence            46788999999999984 56789999999999999999999999997542    3468899999999876531     12


Q ss_pred             -CCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecC---CCCCCCcCCCCCCceeec-CCCcEEEeeEEeeccc
Q psy15052        273 -PPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDN---GGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWGIG  347 (422)
Q Consensus       273 -~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~---~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g~~  347 (422)
                       +..|+++.+++++.+.|+..+..     .+.+.||||+...   ...++|+|||||||++.+ .+++|+|+||+|||.+
T Consensus       186 ~~~~L~~~~v~i~~~~~C~~~~~~-----~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~  260 (289)
T 2bdy_A          186 QPSVLQVVNLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG  260 (289)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHTCSS-----CCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS
T ss_pred             ccccceEEEEEEECHHHhhccccC-----cCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCC
Confidence             67899999999999999987632     3788999998543   367899999999999984 2789999999999999


Q ss_pred             ccCCCCCceeeecccccccccccCCC
Q psy15052        348 CAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       348 C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      |+..+.|+|||||++|++||+++|+.
T Consensus       261 C~~~~~p~vyt~V~~y~~WI~~~i~~  286 (289)
T 2bdy_A          261 CDRDGKYGFYTHVFRLKKWIQKVIDQ  286 (289)
T ss_dssp             SSCTTCCEEEEETGGGHHHHHHHHHC
T ss_pred             CCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            99888999999999999999998864

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=3.2e-50  Score=372.49  Aligned_cols=227  Identities=26%  Similarity=0.529  Sum_probs=196.1

Q ss_pred             CCCCCCCcCeEEEEEecCC---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESLG---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..|.+++|||+|+|+...+   ++|+|+||+++||||||||+.+.....+.|++|.++......   .+.+.|+++++||
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~---~~~~~v~~i~~hp   81 (241)
T 1m9u_A            5 TNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSG---TQTANVDSYTMHE   81 (241)
T ss_dssp             EECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCCTT---CEEEEEEEEEECT
T ss_pred             eECCCCCcCeEEEEEecCCceeeeeEEEEEeCCEEEecHHhCCCCCcceEEEEEEeecCCCCCC---ceEEEEEEEEeCC
Confidence            5678899999999997643   679999999999999999998766778999999988765322   5889999999999


Q ss_pred             CC--CCCCCCCceEEEEECCCcccCCCeeeeecCCC-CCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        216 KY--NFFTYEYDLALVRLETPVEFAPNIVPICLPGS-DDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       216 ~y--~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                      +|  +.....||||||||++|+.|+++++|||||.. .....+..++++|||.+...+..+..|+++.+++++.++|+..
T Consensus        82 ~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~  161 (241)
T 1m9u_A           82 NYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA  161 (241)
T ss_dssp             TTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhhh
Confidence            99  77778899999999999999999999999987 4344789999999999877666788999999999999999987


Q ss_pred             HhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEee----cccccCCCCCceeeeccccccccc
Q psy15052        293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW----GIGCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       293 ~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~----g~~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      +..... ..+.+.|||++...+..+.|+|||||||++.+  ++|+|+||+||    |.+|+..+.|++||||+.|++||+
T Consensus       162 ~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~  238 (241)
T 1m9u_A          162 MVGVGG-ANIWDNHICVQDPAGNTGACNGDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIG  238 (241)
T ss_dssp             HTTSTT-CCCCTTEEEECCTTSCCBCCTTCTTCEEEEES--SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHH
T ss_pred             hcccCC-CcccCCcEEECcCCCCCeeecCcCCccEEEeC--CCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHh
Confidence            643211 12678999998656678999999999999983  88999999999    467987789999999999999999


Q ss_pred             ccC
Q psy15052        369 DTG  371 (422)
Q Consensus       369 ~~i  371 (422)
                      ++|
T Consensus       239 ~~~  241 (241)
T 1m9u_A          239 DNS  241 (241)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            875

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=1.3e-50  Score=379.58  Aligned_cols=235  Identities=30%  Similarity=0.544  Sum_probs=203.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC-CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS-LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~-~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|+....++|+|+||+++||||||||+.. .....+.|++|.+++....+.  .+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~hp~y   82 (261)
T 3gyl_B            5 SSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSED--AKVSTLKDIIPHPSY   82 (261)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCSBTTSCCSS--CEEECEEEEEECTTC
T ss_pred             cCCCCCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCceeccCCCCC--ceEEEEEEEEECCCc
Confidence            56889999999999988778899999999999999999964 345679999999887665442  578899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCC--CCCCceEEEEeccChhhHHHHHh
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGS--LPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~--~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +.....||||||||++|+.|+++++|||||.... ...+..++++|||.+.....  .+..|+++.+.+++.+.|+..+.
T Consensus        83 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  162 (261)
T 3gyl_B           83 LQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYN  162 (261)
T ss_dssp             CSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHT
T ss_pred             CCCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhhhc
Confidence            9988999999999999999999999999997654 44688999999998765543  36789999999999999999886


Q ss_pred             hcCC---cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        295 RAGR---YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       295 ~~~~---~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                      ....   ...+.+.|||++...++.+.|.|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++|
T Consensus       163 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~-~~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i  241 (261)
T 3gyl_B          163 IDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV  241 (261)
T ss_dssp             TTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEE-ETTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             ccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEE-eCCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHHH
Confidence            3211   12478899999876777899999999999998 5789999999999999998889999999999999999998


Q ss_pred             CCCCC
Q psy15052        372 DSGGP  376 (422)
Q Consensus       372 ~~~~p  376 (422)
                      +.-.+
T Consensus       242 ~~~~~  246 (261)
T 3gyl_B          242 TELQP  246 (261)
T ss_dssp             HHHSC
T ss_pred             hhccC
Confidence            75433

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=2.4e-50  Score=375.68  Aligned_cols=231  Identities=26%  Similarity=0.445  Sum_probs=197.0

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQER  206 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~  206 (422)
                      ++.++   ..|.+++|||+|+|++..    .++|+|+||+++||||||||+.+  ...+.|++|.++.....+. ..+.+
T Consensus        13 rIvgG---~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~-~~~~~   86 (251)
T 1pyt_D           13 RVVGG---EDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN--TLTYRVALGKNNLEVEDEA-GSLYV   86 (251)
T ss_dssp             SCCSS---CCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--TCCEEEEESCSBTTCSCCS-SCEEE
T ss_pred             ccCCC---EECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCC--CceEEEEEcccccccCCCC-CcEEE
Confidence            45555   678899999999998532    35799999999999999999974  5678999999887543322 25788


Q ss_pred             eEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccC
Q psy15052        207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS  285 (422)
Q Consensus       207 ~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~  285 (422)
                      .|+++++||+|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+++++
T Consensus        87 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~  166 (251)
T 1pyt_D           87 GVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVD  166 (251)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBC
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeC
Confidence            999999999999888899999999999999999999999998754 3468899999999987777777889999999999


Q ss_pred             hhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccc
Q psy15052        286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKF  363 (422)
Q Consensus       286 ~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y  363 (422)
                      .+.|+..+...   ..+.+.||||+. .+..+.|+|||||||++. .+++|+|+||+|||.  +|+..+.|++||||+.|
T Consensus       167 ~~~C~~~~~~~---~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~-~~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~  241 (251)
T 1pyt_D          167 YATCSQRDWWG---TTVKETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAY  241 (251)
T ss_dssp             HHHHTSTTTTT---TTCCTTEEEECC-SCSSCCCCSCTTCEEEEE-SSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGG
T ss_pred             HHHcchhhccC---CCcCCCeEEecC-CCCCccCCCCCCCceEEE-ECCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHH
Confidence            99998754321   137889999985 556799999999999998 478999999999996  79877899999999999


Q ss_pred             cccccccCC
Q psy15052        364 VPWVLDTGD  372 (422)
Q Consensus       364 ~~WI~~~i~  372 (422)
                      ++||+++++
T Consensus       242 ~~WI~~~~~  250 (251)
T 1pyt_D          242 IDWINQKLQ  250 (251)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999999875

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=2e-51  Score=398.92  Aligned_cols=235  Identities=22%  Similarity=0.386  Sum_probs=193.2

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGV  208 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V  208 (422)
                      ..|++++   ..|.+++|||||+|+....++|+|+||+++||||||||+.........+..+.........  ..+.+.|
T Consensus       100 ~~RIvGG---~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~V  174 (347)
T 4f4o_C          100 VQRIMGG---SLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYVG--KKQEVEI  174 (347)
T ss_dssp             ---CCSC---CBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTTSCTTCCHHHHGGGCEEEET--TTEEECE
T ss_pred             CCeEECC---EECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCCCCCcceEEeeeeeeeecCC--CeEEEEE
Confidence            3467777   7899999999999998888899999999999999999997543333333333322221111  2578999


Q ss_pred             EEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhh
Q psy15052        209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEK  288 (422)
Q Consensus       209 ~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~  288 (422)
                      +++++||+|+    .||||||||++|+.|+++|+|||||.......+..++++|||.+.. +..+..|+++.+++++.++
T Consensus       175 ~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~-~~~s~~L~~~~v~iv~~~~  249 (347)
T 4f4o_C          175 EKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNAN-LNFTEHLKYVMLPVADQEK  249 (347)
T ss_dssp             EEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTT-SSBCSSCEEEEEEEECHHH
T ss_pred             EEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCC-CCCCccceEEEEEEeCHHH
Confidence            9999999996    4899999999999999999999999887677899999999998754 4567899999999999999


Q ss_pred             HHHHHhhcC------------CcccccCceEEEeecCCCCCCCcCCCCCCceeec-CCCcEEEeeEEeecccccCCCCCc
Q psy15052        289 CRSMFLRAG------------RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPG  355 (422)
Q Consensus       289 C~~~~~~~~------------~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g~~C~~~~~p~  355 (422)
                      |++.|....            ....++++||||+...++.++|+|||||||++.+ .+++|+|+||+|||.+|+. +.|+
T Consensus       250 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~-~~pg  328 (347)
T 4f4o_C          250 CVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRT-AEYG  328 (347)
T ss_dssp             HHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCTTT-SSCE
T ss_pred             HHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCCCC-CCCe
Confidence            999886431            1224788999999888889999999999999864 5789999999999999974 5699


Q ss_pred             eeeecccccccccccCCCC
Q psy15052        356 VCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       356 vyt~V~~y~~WI~~~i~~~  374 (422)
                      |||||++|++||+++|.++
T Consensus       329 VYTrVs~y~~WI~~~i~~N  347 (347)
T 4f4o_C          329 VYVRVTSILDWIQTTIADN  347 (347)
T ss_dssp             EEEEHHHHHHHHHHHHTC-
T ss_pred             EEEEHHHHHHHHHHHHHcC
Confidence            9999999999999998753

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-50  Score=371.42  Aligned_cols=220  Identities=31%  Similarity=0.583  Sum_probs=192.2

Q ss_pred             CCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      .+|.+++|||+|+|+.. +.++|+|+||+++||||||||+..  ...+.|++|.++......  ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y   80 (228)
T 1fxy_A            5 YNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEG--GEAVHEVEVVIKHNRF   80 (228)
T ss_dssp             EECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTS--CSSCEEEEECSCTTTCCC--CEEEEEEEEEEECTTC
T ss_pred             EECCCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCC--CCcEEEEECccCccccCC--CcEEEEEEEEEECCCC
Confidence            56788999999999875 356799999999999999999964  467899999987764433  2578999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCC-CCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....||||||||++|+.|+++++|||||... ...+..++++|||.+...+. .+..|+++.+++++.++|+..+.. 
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-  158 (228)
T 1fxy_A           81 TKETYDFDIAVLRLKTPITFRMNVAPASLPTAP-PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG-  158 (228)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-
T ss_pred             CCCCCcCcEEEEEECCcccCCCceeccCCCCCC-CCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCC-
Confidence            998889999999999999999999999999765 45789999999998876554 678999999999999999987743 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                          .+.+.|||++...++.+.|+|||||||++++     +|+||+|||.+|+..+.|++||||++|++||+++++.
T Consensus       159 ----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  226 (228)
T 1fxy_A          159 ----KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG-----QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             ----TCCTTEEEESCTTCSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             ----CCCCCEEEeccCCCCCccccCccccceEECC-----EEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHhc
Confidence                3788999998666678999999999999863     5999999999998888999999999999999998864

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=1.4e-50  Score=374.82  Aligned_cols=226  Identities=28%  Similarity=0.459  Sum_probs=194.4

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+...    .++|+|+||+++||||||||+..  ...+.|++|.+++.....  ..+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~H   80 (240)
T 1gvk_B            5 TEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVGEHNLNQNNG--TEQYVGVQKIVVH   80 (240)
T ss_dssp             EECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCS--CCCEEEEESCSBTTSCCS--CCEEEEEEEEEEC
T ss_pred             eECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCC--CcceEEEECCeecccCCC--cceEEEEEEEEEC
Confidence            567889999999998633    26799999999999999999975  367899999988765443  2578999999999


Q ss_pred             CCCCCCCC--CCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTY--EYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+....  .||||||||++|+.|+++++|+|||.... ...+..++++|||.+..++..+..|+++.+++++.+.|+.
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (240)
T 1gvk_B           81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTS
T ss_pred             CCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhcc
Confidence            99998777  89999999999999999999999998754 4568899999999987777778899999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...   ..+.+.||||+ ..+..+.|+|||||||++. .+++|+|+||+|||.  +|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~---~~~~~~~~Ca~-~~~~~~~C~GDSGgPL~~~-~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  235 (240)
T 1gvk_B          161 SSYWG---STVKNSMVCAG-GDGVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN  235 (240)
T ss_dssp             TTTTG---GGCCTTEEEEC-CSSSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             ccccC---ccCCcceEeec-CCCCCcccCCCCcCceEEE-ECCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHH
Confidence            53211   13788999998 4556899999999999998 478999999999995  79877899999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      ++++
T Consensus       236 ~i~~  239 (240)
T 1gvk_B          236 VIAS  239 (240)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8753

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=3.2e-50  Score=372.31  Aligned_cols=229  Identities=24%  Similarity=0.379  Sum_probs=196.7

Q ss_pred             cccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC-CCCceEEEEEeeeecccCCCCCCcEEEeEEE
Q psy15052        132 YYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS-LLTSQIKIRVGEYDFSKLEEPYPYQERGVVK  210 (422)
Q Consensus       132 ~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~-~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~  210 (422)
                      +.++   .+|.+++|||||+|+..+.++|+|+||+++||||||||+.. .....+.|++|.+++......  .+.+.|++
T Consensus         3 IvgG---~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~--~~~~~v~~   77 (240)
T 1mza_A            3 IIGG---KEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEAS--KQTLEIKK   77 (240)
T ss_dssp             CCCC---EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTT--CEEEEEEE
T ss_pred             eECC---EECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCceecCCCCCc--eEEEEEEE
Confidence            4455   66889999999999987677899999999999999999874 335678999999887654432  58899999


Q ss_pred             EEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCC-CCCCceEEEEeccChhhH
Q psy15052        211 KMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKC  289 (422)
Q Consensus       211 i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~~~~C  289 (422)
                      +++||+|+.....||||||||++|+.|+++++|||||.......+..++++|||.+..++. .+..|+++.+++++.++|
T Consensus        78 i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C  157 (240)
T 1mza_A           78 FIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLC  157 (240)
T ss_dssp             EEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHH
T ss_pred             EEeCCCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHc
Confidence            9999999988889999999999999999999999999855556789999999999876654 678999999999999999


Q ss_pred             H--HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccc-cccc
Q psy15052        290 R--SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK-FVPW  366 (422)
Q Consensus       290 ~--~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~-y~~W  366 (422)
                      +  ..+...   ..+.+.||||+...+..+.|+|||||||++++     +|+||+|||.+|+..+.|++||||+. |++|
T Consensus       158 ~~~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~W  229 (240)
T 1mza_A          158 NSQSYYNGD---PFITKDMVCAGDAKGQKDSCKGDAGGPLICKG-----VFHAIVSGGHECGVATKPGIYTLLTKKYQTW  229 (240)
T ss_dssp             TSTTTTTTT---TCCCTTEEEEECTTSCCCCCTTCTTCEEEETT-----EEEEEECSSCCSSCTTCCEEEEECCHHHHHH
T ss_pred             CCcceeCCC---CcCCCCeEeecCCCCCCccCCCCCCCeeEECC-----EEEEEEEECCCCCCCCCCcEEEeChHHHHHH
Confidence            8  444221   13788999999666678999999999999953     69999999999998889999999999 9999


Q ss_pred             ccccCCC
Q psy15052        367 VLDTGDS  373 (422)
Q Consensus       367 I~~~i~~  373 (422)
                      |+++++.
T Consensus       230 I~~~~~~  236 (240)
T 1mza_A          230 IKSNLVP  236 (240)
T ss_dssp             HHHHTCC
T ss_pred             HHHhccC
Confidence            9999874

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=2.5e-50  Score=368.62  Aligned_cols=216  Identities=30%  Similarity=0.552  Sum_probs=190.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||+|+|+. +.++|+|+||+++||||||||+.    ..+.|++|.++......  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~   77 (222)
T 1hj8_A            5 YECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEG--SEQFISSSRVIRHPNYS   77 (222)
T ss_dssp             EECCTTSCTTEEEEES-SSEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTSCCS--CCEEEEEEEEEECTTCB
T ss_pred             EECCCCCCCEEEEEEc-CCcEEEeEEecCCEEEECHHhcC----CCeEEEEcccccccCCC--CcEEEEEEEEEECCCCC
Confidence            5678899999999974 45789999999999999999996    45789999988764433  25789999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                      .....||||||||++|+.|+++++|||||... ...+..++++|||.+...+..+..|+++.+++++.++|+..+..   
T Consensus        78 ~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~---  153 (222)
T 1hj8_A           78 SYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG---  153 (222)
T ss_dssp             TTTTBSCCEEEEESSCCCCSSSCCCCBCCSSC-CCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT---
T ss_pred             CCCCCCcEEEEEECCcccCCCceeccCCCCCC-CCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccC---
Confidence            98889999999999999999999999999765 45788999999999877666788999999999999999987743   


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                        .+.+.|||++...++.+.|+|||||||++++     +|+||+|||.+|+..+.|++||||+.|++||+++|+
T Consensus       154 --~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~  220 (222)
T 1hj8_A          154 --MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             --CCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             --CCCCCeEEeccCCCCCccCCCCcccceEECC-----EEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHhh
Confidence              3788999998666678999999999999853     599999999999988899999999999999999875

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=3.1e-50  Score=372.32  Aligned_cols=222  Identities=23%  Similarity=0.452  Sum_probs=193.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||||+|+..+.++|+|+||+++||||||||+.... ..+.|++|.+++...     .+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~v~~G~~~~~~~-----~~~~~v~~i~~Hp~y~   78 (240)
T 2zgc_A            5 REVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRM-AQLRLVLGLHTLDSP-----GLTFHIKAAIQHPRYK   78 (240)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSCG-GGEEEEESCSBSSSC-----CEEEEEEEEEECTTCB
T ss_pred             EECCCCCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCCC-CCEEEEecccccCCC-----CeEEEEEEEEECCCCC
Confidence            5678899999999998766789999999999999999997643 379999999876542     3788999999999999


Q ss_pred             CCC-CCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH--HHh
Q psy15052        219 FFT-YEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS--MFL  294 (422)
Q Consensus       219 ~~~-~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~--~~~  294 (422)
                      ... ..||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+++++.++|+.  .+.
T Consensus        79 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~  158 (240)
T 2zgc_A           79 PVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWN  158 (240)
T ss_dssp             CTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTT
T ss_pred             CCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccC
Confidence            876 889999999999999999999999998654 4568999999999987767778899999999999999987  332


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .     .+.+.|||++...++.+.|+|||||||++++   .|+|+||+||| .+|+..+.|++||||+.|++||+++++.
T Consensus       159 ~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  230 (240)
T 2zgc_A          159 G-----SLSPSMVCLAADSKDQAPCKGDSGGPLVCGK---GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGR  230 (240)
T ss_dssp             T-----CCCTTEEEEECSSTTCBCCTTCTTCEEEETT---TTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCC
T ss_pred             C-----CCCCceEeeccCCCCCccCCCCccCeeEECC---CCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhh
Confidence            2     3678999998666678999999999999853   37899999999 7898888899999999999999999864


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       231 ~  231 (240)
T 2zgc_A          231 S  231 (240)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=4.1e-50  Score=374.26  Aligned_cols=228  Identities=26%  Similarity=0.447  Sum_probs=193.7

Q ss_pred             CCCCCCCcCeEEEEEecC------CCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESL------GRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~------~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      ..|.+++|||||+|+...      .++|+||||+++||||||||+... ....+.|++|.++.....+.  .+.+.|+++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~--~~~~~v~~i   82 (252)
T 1rtf_B            5 LFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEE--EQKFEVEKY   82 (252)
T ss_dssp             EECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTT--CEEEEEEEE
T ss_pred             eECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCCCCc--ceEEEEEEE
Confidence            567889999999998532      357999999999999999999763 45679999999877654332  588999999


Q ss_pred             EECCCCCCCCCCCceEEEEECCC----cccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCC-CCCCCceEEEEeccC
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETP----VEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVS  285 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~  285 (422)
                      ++||+|+.....||||||||++|    +.|+++++|||||.... ...+..++++|||.+.... ..+..|+++.+++++
T Consensus        83 ~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~  162 (252)
T 1rtf_B           83 IVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYP  162 (252)
T ss_dssp             EECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECC
T ss_pred             EeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEec
Confidence            99999999889999999999999    89999999999997653 3468899999999876544 357889999999999


Q ss_pred             hhhHHHHHhhcCCcccccCceEEEeecCCC------CCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeee
Q psy15052        286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGG------RDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTR  359 (422)
Q Consensus       286 ~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~------~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~  359 (422)
                      .++|+..+...   ..+.+.||||+...++      .+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++|||
T Consensus       163 ~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~  238 (252)
T 1rtf_B          163 SSRCTSQHLLN---RTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWGLGCGQKDVPGVYTK  238 (252)
T ss_dssp             GGGSSTTTTTT---CCCCTTEEEEECCC------CCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEE
T ss_pred             HHHhhhhhccC---CCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEE-eCCcEEEEEEEEEcCCCCCCCCCeEEEE
Confidence            99998765322   1378899999865443      789999999999998 5789999999999999988888999999


Q ss_pred             cccccccccccCC
Q psy15052        360 ISKFVPWVLDTGD  372 (422)
Q Consensus       360 V~~y~~WI~~~i~  372 (422)
                      |+.|++||+++|+
T Consensus       239 V~~y~~WI~~~~~  251 (252)
T 1rtf_B          239 VTNYLDWIRDNMR  251 (252)
T ss_dssp             GGGGHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999886

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=3.9e-50  Score=367.56  Aligned_cols=217  Identities=27%  Similarity=0.529  Sum_probs=190.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||||+|+..+.++|+|+||+++||||||||+.    ..+.|++|.++.......  .+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~   78 (223)
T 1lo6_A            5 GPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHNLRQRESS--QEQSSVVRAVIHPDYD   78 (223)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----TTCEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC
T ss_pred             EECCCCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCC----CCeEEEEcceecCCCCCC--cEEEEEEEEEECCCCC
Confidence            5678899999999987766789999999999999999986    457899999887654432  5789999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                      .....||||||||++|+.|+++++|||||.... ..+..++++|||.+. .+..+..|+++.+++++.++|+..+..   
T Consensus        79 ~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~~~~~~~C~~~~~~---  153 (223)
T 1lo6_A           79 AASHDQDIMLLRLARPAKLSELIQPLPLERDCS-ANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPG---  153 (223)
T ss_dssp             TTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-CCCCEEEEEESSCCT-TSSCCSBCEEEEEEEECHHHHHHHSTT---
T ss_pred             CCCCcCeEEEEEECCcccCCCceeecccCCCCC-CCCCEEEEEEECCCC-CCCcCceeeEEEEEEeCHHHhhhhhCC---
Confidence            988899999999999999999999999997653 578899999999886 556688999999999999999987743   


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                        .+.+.|||++....+.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|++||+++|+.
T Consensus       154 --~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          154 --QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             --TCCTTEEEEECTTTCCBCCTTTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             --CCCCCeEEeecCCCCCeeccccCCCcEEeCC-----EEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence              3788999999766678999999999999963     599999999 6898888999999999999999998863

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=6.7e-50  Score=371.96  Aligned_cols=229  Identities=29%  Similarity=0.507  Sum_probs=196.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||||+|+.. .++|+|+||+++||||||||+.... ...+.|++|.++.....+  ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~hp~y   81 (248)
T 2r0l_A            5 SSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTD--VTQTFGIEKYIPYTLY   81 (248)
T ss_dssp             EECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCS--SCEEECEEEEEECTTC
T ss_pred             ccCCCCCCCeEEEEEcC-CceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeEEcCCCCC--ccEEEeeeEEEeCCcc
Confidence            56788999999999875 6789999999999999999997643 467999999988765443  2588999999999999


Q ss_pred             CC-CCCCCceEEEEECCC----cccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCC-CCCCceEEEEeccChhhHH
Q psy15052        218 NF-FTYEYDLALVRLETP----VEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       218 ~~-~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~~~~C~  290 (422)
                      +. ....||||||||++|    +.|+++++|||||.... ...+..++++|||.+..... .+..|+++.+++++.++|+
T Consensus        82 ~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~  161 (248)
T 2r0l_A           82 SVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS  161 (248)
T ss_dssp             CTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHHHT
T ss_pred             CcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHHhC
Confidence            97 778899999999999    88999999999997643 45689999999998875543 4788999999999999998


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      ..+...   ..+.+.|||++...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++
T Consensus       162 ~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  237 (248)
T 2r0l_A          162 SPEVYG---ADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR  237 (248)
T ss_dssp             STTTTG---GGCCTTEEEESCSSSCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             CccccC---CcCCCCEEeECCCCCCCcCCCCccCCeEEEE-ECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHH
Confidence            642211   1378899999866667899999999999998 478999999999999998888999999999999999999


Q ss_pred             CCCC
Q psy15052        371 GDSG  374 (422)
Q Consensus       371 i~~~  374 (422)
                      ++..
T Consensus       238 ~~~~  241 (248)
T 2r0l_A          238 IRPP  241 (248)
T ss_dssp             HC--
T ss_pred             hcCC
Confidence            8754

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=4.3e-50  Score=367.31  Aligned_cols=216  Identities=34%  Similarity=0.606  Sum_probs=188.3

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|+ .+.++|+|+||+++||||||||+.    ..+.|++|.+++.....  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~-~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~   77 (223)
T 3mfj_A            5 YTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNINVVEG--NEQFISASKSIVHPSYN   77 (223)
T ss_dssp             EECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCC----SSCEEEESCSSTTSCCS--CCEEEEEEEEEECTTCC
T ss_pred             EECCCCcCCEEEEEE-cCCeEEEEEEecCCEEEEhHHhcC----CCcEEEECCceecccCC--CcEEEEeeEEEECCCCC
Confidence            567889999999994 456789999999999999999994    46789999988754333  25889999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCC-CCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||... ...+..++++|||.+.. +...+..|+++.+++++.++|+..+..  
T Consensus        78 ~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--  154 (223)
T 3mfj_A           78 SNTLNNDIMLIKLKSAASLNSRVASISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--  154 (223)
T ss_dssp             TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT--
T ss_pred             CCCCCCCEEEEEeCCCcccCCcEeeeECCCCC-CCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcC--
Confidence            98889999999999999999999999999765 35789999999998853 345578899999999999999987743  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                         .+.+.|||++...++.+.|+|||||||++++     +|+||+|||.+|+..+.|++||||++|++||+++++
T Consensus       155 ---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~  221 (223)
T 3mfj_A          155 ---QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             ---TCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             ---cCCCCEEEccCCCCCCCcCCCCcccceEECC-----EEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHh
Confidence               3788999998666678999999999999953     499999999999888899999999999999999875

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=7.1e-50  Score=371.15  Aligned_cols=227  Identities=30%  Similarity=0.530  Sum_probs=193.2

Q ss_pred             CCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCC--CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNS--LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ..|.+++|||||+|+...   .++|+|+||+++||||||||+..  .....+.|++|.++....     .+.+.|+++++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~-----~~~~~v~~i~~   79 (245)
T 2f9n_A            5 QEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQ-----DQLLPVSRIIV   79 (245)
T ss_dssp             EECCTTSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCSBTTTT-----CCCBCEEEEEE
T ss_pred             eECCCCCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCcccccC-----ceEEEEEEEEE
Confidence            567889999999998743   35799999999999999999964  345679999998876532     35678999999


Q ss_pred             CCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCC--CCCceEEEEeccChhhHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSL--PPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~--~~~L~~~~v~v~~~~~C~  290 (422)
                      ||+|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..  +..|+++.+++++.++|+
T Consensus        80 Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~  159 (245)
T 2f9n_A           80 HPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICD  159 (245)
T ss_dssp             CTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHH
T ss_pred             CCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhh
Confidence            99999888899999999999999999999999997653 446889999999988765443  357999999999999999


Q ss_pred             HHHhhcCC----cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccc
Q psy15052        291 SMFLRAGR----YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPW  366 (422)
Q Consensus       291 ~~~~~~~~----~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~W  366 (422)
                      ..+.....    ...+.+.||||+  ..+.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~-~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~W  236 (245)
T 2f9n_A          160 AKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDW  236 (245)
T ss_dssp             HHHHTTCCSCTTSCCSCTTEEEEC--CSSSBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHH
T ss_pred             hhhcccccccccccccccccEeec--CCCCCcCCCCCCCceEEE-ECCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHH
Confidence            88754211    123788999997  356789999999999998 47899999999999999888899999999999999


Q ss_pred             ccccCCC
Q psy15052        367 VLDTGDS  373 (422)
Q Consensus       367 I~~~i~~  373 (422)
                      |+++++.
T Consensus       237 I~~~~~~  243 (245)
T 2f9n_A          237 IHHYVPK  243 (245)
T ss_dssp             HHHHSCC
T ss_pred             HHHHhhc
Confidence            9999864

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=5.8e-50  Score=366.22  Aligned_cols=216  Identities=29%  Similarity=0.485  Sum_probs=189.3

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      .+|.+++|||+|+|+..+.++|+|+||+++||||||||+.+.. ...+.|++|.++...     ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~-----~~~~~~v~~~~~hp~y   79 (222)
T 1eq9_A            5 KDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSE-----SGDVYDVEDAVVNKNY   79 (222)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTTS-----CCEEEEEEEEEECTTC
T ss_pred             EECCCCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECceecCC-----CCeEEEEEEEEECCCC
Confidence            5678999999999998767789999999999999999997643 577999999987642     2578999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      +.....||||||||++|+.|+++++|||||.......+..++++|||.+..++..+..|+++.+++++.++|++...   
T Consensus        80 ~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---  156 (222)
T 1eq9_A           80 DDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---  156 (222)
T ss_dssp             BTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSS---
T ss_pred             CCCCCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccC---
Confidence            98888999999999999999999999999987655678899999999987766778899999999999999983321   


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                         .+.+.|+|++. ..+.+.|+|||||||++++     +|+||+|||.+|+. +.|++||||++|++||+++|+
T Consensus       157 ---~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~  221 (222)
T 1eq9_A          157 ---RVIDSHICTLT-KRGEGACHGDSGGPLVANG-----AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             ---SCCTTEEEECC-CTTCBCCTTCTTCEEEETT-----EEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSC
T ss_pred             ---CCCccEEeecC-CCCCeeeeCCccceEEECC-----EEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhh
Confidence               16788999985 4567899999999999853     69999999999986 789999999999999999886

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=7.4e-50  Score=369.98  Aligned_cols=227  Identities=28%  Similarity=0.553  Sum_probs=196.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC--CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS--LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..+.+++|||+|+|+  ..++|+|+||+++||||||||+.+  .....+.|++|..+.....    .+.+.|+++++||+
T Consensus         5 ~~a~~~~~Pw~v~l~--~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~----~~~~~v~~i~~hp~   78 (242)
T 3tvj_B            5 QKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH----YTQAWSEAVFIHEG   78 (242)
T ss_dssp             EECCTTSSTTEEEEE--SSEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCSBTTCSC----CEEEEEEEEEECTT
T ss_pred             eeCCCCCCCCEEEEe--cCCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccccccCcc----cceeeEEEEEeCCC
Confidence            567889999999998  467899999999999999999976  4556789999998765433    37789999999999


Q ss_pred             CCC-CCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        217 YNF-FTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       217 y~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                      |+. ....||||||||++|+.|+++++|||||....   ...+..++++|||.+.. +..+..|+++.+.+++.++|+..
T Consensus        79 y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~~~i~~~~~C~~~  157 (242)
T 3tvj_B           79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAA  157 (242)
T ss_dssp             CCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEeeeEEcHHHHHHh
Confidence            997 66789999999999999999999999998763   45788999999998764 56688999999999999999998


Q ss_pred             HhhcCC-cccccCceEEEeecCCCCCCCcCCCCCCceeec-CCCcEEEeeEEeec-ccccCCCCCceeeecccccccccc
Q psy15052        293 FLRAGR-YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       293 ~~~~~~-~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      +..... ...+.+.||||+...++.+.|+|||||||++.+ .+++|+|+||+||| .+|+..+.|++||||+.|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  237 (242)
T 3tvj_B          158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN  237 (242)
T ss_dssp             HHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            865311 123788999998777778999999999999874 67899999999999 789988899999999999999998


Q ss_pred             cCC
Q psy15052        370 TGD  372 (422)
Q Consensus       370 ~i~  372 (422)
                      +|+
T Consensus       238 ~i~  240 (242)
T 3tvj_B          238 IIS  240 (242)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            874

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=8.1e-50  Score=365.45  Aligned_cols=217  Identities=29%  Similarity=0.489  Sum_probs=189.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|+..+.++|+|+||+++||||||||+.+    .+.|++|.++.....+. ..+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~g~~~~~~~~~~-~~~~~~v~~~~~Hp~y~   79 (223)
T 2bdg_A            5 EDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN----SYTIGLGLHSLEADQEP-GSQMVEASLSVRHPEYN   79 (223)
T ss_dssp             EECCTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCCS----SEEEEESCSBSCGGGCT-TCEEEEEEEEEECTTTT
T ss_pred             EECCCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCCC----CeEEEEeeeecCCCCCC-CcEEEEEEEEEeCCCCC
Confidence            56788999999999987677899999999999999999963    57899998876543222 25788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                      .....||||||||++|+.|+++++|||||... ...+..++++|||.+..+ ..+..|+++.+++++.++|++.+..   
T Consensus        80 ~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~-~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~---  154 (223)
T 2bdg_A           80 RPLLANDLMLIKLDESVSESDTIRSISIASQC-PTAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSKLYDP---  154 (223)
T ss_dssp             SSTTCSCCEEEEESSCCCCCSSCCCCCBCSSC-CCTTCEEEEEESCCCTTS-CCCSBCEEEEEEBCCHHHHHHHSTT---
T ss_pred             CCCCcCcEEEEEECCcccCCCceecccCCCCC-CCCCCEEEEEeCcccCCC-CCCCcceEEEEEEeCHHHhhhhhCC---
Confidence            98889999999999999999999999998754 456889999999987654 5678899999999999999987743   


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                        .+.+.||||+...++.+.|+|||||||++++     +|+||+|||. +|+..+.|++||||+.|++||+++|+
T Consensus       155 --~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          155 --LYHPSMFCAGGGQDQKDSCNGDSGGPLICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             --TCCTTEEEECCSTTCCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred             --CCCCCeEeccCCCCCCCcCCCCCCchheEcc-----EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence              3788999998656678999999999999963     6999999996 69888899999999999999998875

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=6.2e-50  Score=393.12  Aligned_cols=236  Identities=30%  Similarity=0.505  Sum_probs=200.4

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC--CCCceEEEEEeeeecccCCCCCCcEEE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS--LLTSQIKIRVGEYDFSKLEEPYPYQER  206 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~V~lG~~~~~~~~~~~~~~~~  206 (422)
                      ..++.++   ..|.+++|||+|+|+....++|+||||+++||||||||+..  .....+.|++|.++.....    .+.+
T Consensus       115 ~~rIvgG---~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~----~~~~  187 (372)
T 1z8g_A          115 VDRIVGG---RDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPH----GLQL  187 (372)
T ss_dssp             ---CBSC---EECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTT----SEEE
T ss_pred             CCceECC---EECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeEeccCCC----CcEE
Confidence            3466776   67889999999999987778899999999999999999953  2356799999998765422    3678


Q ss_pred             eEEEEEECCCC------CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEE
Q psy15052        207 GVVKKMVHPKY------NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKV  279 (422)
Q Consensus       207 ~V~~i~iHp~y------~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~  279 (422)
                      .|+++++||+|      +.....||||||||++|+.|+++|+|||||.... ...+..++++|||.+...+..+..|+++
T Consensus       188 ~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~~  267 (372)
T 1z8g_A          188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEA  267 (372)
T ss_dssp             CEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEE
T ss_pred             EEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeEE
Confidence            99999999999      6777889999999999999999999999997653 4568899999999988766778899999


Q ss_pred             EEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecC---CCcEEEeeEEeecccccCCCCCce
Q psy15052        280 TVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK---DGRYFLAGIISWGIGCAEANLPGV  356 (422)
Q Consensus       280 ~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~---~~~~~lvGV~S~g~~C~~~~~p~v  356 (422)
                      .+++++.+.|+......   ..+.+.||||+...++.++|+|||||||++.+.   +++|+|+||+|||.+|+..+.|+|
T Consensus       268 ~v~ii~~~~C~~~~~~~---~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~v  344 (372)
T 1z8g_A          268 RVPIISNDVCNGADFYG---NQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGV  344 (372)
T ss_dssp             EEEEECHHHHTSTTTTT---TCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEE
T ss_pred             EEEecChHHhCcchhcC---CcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeE
Confidence            99999999998642111   137889999997667789999999999999743   489999999999999998889999


Q ss_pred             eeecccccccccccCCCC
Q psy15052        357 CTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       357 yt~V~~y~~WI~~~i~~~  374 (422)
                      ||||+.|++||+++|+..
T Consensus       345 yt~V~~y~~WI~~~i~~~  362 (372)
T 1z8g_A          345 YTKVSDFREWIFQAIKTH  362 (372)
T ss_dssp             EEEGGGGHHHHHHHHHHT
T ss_pred             EEEHHHHHHHHHHHHhcc
Confidence            999999999999998643

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=375.23  Aligned_cols=243  Identities=25%  Similarity=0.413  Sum_probs=199.3

Q ss_pred             CCCccccccccCCCCCCCCCcCeEEEEEecCC-----CCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCC
Q psy15052        126 PRPMLSYYSHKDISSKNTTQRPYVKPLKESLG-----RPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEE  199 (422)
Q Consensus       126 ~~~~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~-----~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~  199 (422)
                      .++..++++|   ..|.+++|||||+|+....     ++|+||||+++||||||||+.+. ....+.|++|..++....+
T Consensus        18 ~~~~~rIvgG---~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~   94 (276)
T 2vnt_A           18 LRPRFKIIGG---EFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQ   94 (276)
T ss_dssp             C-----CCSS---EECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCCBSSSCCT
T ss_pred             CCCCCcEECC---EECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccCCCCCccEEEEeeeeeccCCCC
Confidence            3445678887   7789999999999986542     47999999999999999999764 3467889999988776554


Q ss_pred             CCCcEEEeEEEEEECCCCCCCC--CCCceEEEEECCCc----ccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCC-C
Q psy15052        200 PYPYQERGVVKKMVHPKYNFFT--YEYDLALVRLETPV----EFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGG-S  271 (422)
Q Consensus       200 ~~~~~~~~V~~i~iHp~y~~~~--~~nDIALLkL~~pv----~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~-~  271 (422)
                      .  .+.+.|+++++||+|+...  ..+|||||+|+.++    .|+++++|||||.... ...+..+.++|||.+...+ .
T Consensus        95 ~--~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~  172 (276)
T 2vnt_A           95 G--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYL  172 (276)
T ss_dssp             T--CEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSC
T ss_pred             c--eEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccCCCC
Confidence            3  6899999999999998654  36899999999765    5789999999997653 4568899999999876544 4


Q ss_pred             CCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCC
Q psy15052        272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA  351 (422)
Q Consensus       272 ~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~  351 (422)
                      ....|+.+.+.+++.++|...+....   ...+.++|++...+..++|+|||||||++. .+++|+|+||+|||.+|+..
T Consensus       173 ~~~~l~~~~~~i~~~~~C~~~~~~~~---~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~-~~~~~~lvGIvS~G~~C~~~  248 (276)
T 2vnt_A          173 YPEQLKMTVVKLISHRECQQPHYYGS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALK  248 (276)
T ss_dssp             CCSBCEEEEEEEECHHHHTSTTTTGG---GSCTTEEEEECTTSCCCCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSBT
T ss_pred             cchhheeeeeeEecHHHhhhhhccCc---ccCccceeeccCCCCCCCCCCCCCCeEEEe-eCCeEEEEEEEEECCCCCCC
Confidence            56788999999999999988764332   366778888877778899999999999998 57899999999999999988


Q ss_pred             CCCceeeecccccccccccCCCCCCc
Q psy15052        352 NLPGVCTRISKFVPWVLDTGDSGGPL  377 (422)
Q Consensus       352 ~~p~vyt~V~~y~~WI~~~i~~~~pl  377 (422)
                      +.|+|||||++|++||+++|+...-|
T Consensus       249 ~~P~vyt~V~~y~~WI~~~~~~~nGl  274 (276)
T 2vnt_A          249 DKPGVYTRVSHFLPWIRSHTKEENGL  274 (276)
T ss_dssp             TBCEEEEEGGGGHHHHHHHHSCC---
T ss_pred             CCCEEEEEHHHHHHHHHHHhhhhcCC
Confidence            99999999999999999999865433

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=1.7e-49  Score=366.08  Aligned_cols=222  Identities=27%  Similarity=0.421  Sum_probs=191.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.+++|||||+|+..+.++|+|+||+++||||||||+.+   ..+.|++|.+++.....  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~   79 (234)
T 1orf_A            5 NEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN---KRSQVILGAHSITREEP--TKQIMLVKKEFPYPCYD   79 (234)
T ss_dssp             EECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCC---TTCEEEESCSBSSSCCT--TCEEECEEEEEECTTCC
T ss_pred             EECCCCCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCCC---CCceEEEeccccCcCCC--ceEEEEEEEEEcCCCCC
Confidence            56788999999999987778899999999999999999975   45789999988765433  25889999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH--HHhh
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS--MFLR  295 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~--~~~~  295 (422)
                      .....||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+++++.++|++  .+. 
T Consensus        80 ~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~-  158 (234)
T 1orf_A           80 PATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYN-  158 (234)
T ss_dssp             TTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTT-
T ss_pred             CCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCccccc-
Confidence            988999999999999999999999999997664 3568899999999987766678899999999999999983  332 


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecc-cccccccccCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWVLDTGD  372 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~-~y~~WI~~~i~  372 (422)
                        ....+.+.||||+...++.+.|+|||||||++++     +|+||+|||.  +|+..+.|++||||+ +|++||+++++
T Consensus       159 --~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~  231 (234)
T 1orf_A          159 --FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK  231 (234)
T ss_dssp             --TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT-----EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             --cCCccCCCEEEecCCCCCCcCCCCCCCCeEEECC-----EEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHH
Confidence              1123455999999666678999999999999953     6999999997  898878999999999 99999999886


Q ss_pred             C
Q psy15052        373 S  373 (422)
Q Consensus       373 ~  373 (422)
                      .
T Consensus       232 ~  232 (234)
T 1orf_A          232 G  232 (234)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=1.4e-49  Score=365.07  Aligned_cols=222  Identities=25%  Similarity=0.468  Sum_probs=192.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|+..+.++|+|+||+++||||||||+.+.....+.|++|.+++......  .+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~   82 (228)
T 2xw9_A            5 REAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPS--KRLYDVLRAVPHPDSQ   82 (228)
T ss_dssp             -CCCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCTTCCEEEEESCSBSSSCCTT--CEEEEEEEEEECTTCC
T ss_pred             eECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCCCCceEEEEcccccCCCCCc--ceEEEEEEEEeCCCCC
Confidence            67889999999999987777899999999999999999987666689999999887654432  5789999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|++.+...+
T Consensus        83 ~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  162 (228)
T 2xw9_A           83 PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG  162 (228)
T ss_dssp             TTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTTTTTT
T ss_pred             CCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCccccCC
Confidence            988999999999999999999999999997643 4568899999999987777778899999999999999987764322


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                         .+.+.|||++.  .+.+.|+|||||||++++     +|+||+|||. +|+..+.|++||||++|++||+++|+
T Consensus       163 ---~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~~-----~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          163 ---AITERLMCAES--NRRDSCKGDAGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             ---CCCTTEEEECC--SSCBCCTTCTTCEEEETT-----EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             ---cccCCEEecCC--CCCccCCCCCcccEEECC-----EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence               37889999984  567899999999999953     6999999997 79877899999999999999998764

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=1.7e-49  Score=364.43  Aligned_cols=219  Identities=30%  Similarity=0.534  Sum_probs=189.2

Q ss_pred             CCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|+.. +.++|+|+||+++||||||||+.    ..+.|++|.+++....+. ..+.+.|.++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~-~~~~~~v~~~~~Hp~y   79 (227)
T 2psx_A            5 SDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYSLSPVYES-GQQMFQGVKSIPHPGY   79 (227)
T ss_dssp             EECCTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCC----SSCEEEESCCBSSCCCCT-TCEEEEEEEEEECTTC
T ss_pred             EECCCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCC----CCcEEEEeeeecccCCCC-CcEEEEEEEEEeCCCC
Confidence            56789999999999876 34689999999999999999986    357899999887654222 2578999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....||||||||++|+.|+++++|||||... ...+..++++|||.+...+ ..+..|+++.+++++.++|+..+.. 
T Consensus        80 ~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~-  157 (227)
T 2psx_A           80 SHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHC-PSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR-  157 (227)
T ss_dssp             CSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTT-
T ss_pred             CCCCCCCCEEEEEeCCCCCCCCceeeeECCCCC-CCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCC-
Confidence            988889999999999999999999999998643 4678899999999887654 4578899999999999999987753 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                          .+.+.|||++. ..+.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|++||+++++.+
T Consensus       158 ----~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  226 (227)
T 2psx_A          158 ----QIDDTMFCAGD-KAGRDSCQGDSGGPVVCNG-----SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN  226 (227)
T ss_dssp             ----TCCTTEEEECC-STTCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHHT
T ss_pred             ----CCCCCEEcccC-CCCCccCCCCCCcceeeCC-----EEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence                37889999984 4567999999999999864     599999999 68988889999999999999999988643

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=3.7e-49  Score=363.65  Aligned_cols=224  Identities=18%  Similarity=0.228  Sum_probs=199.4

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..+.+++|||+|+|+..+.++|+|+||+++||||||||+.+.....+.|++|.++....     .+.+.|+++++| +|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~-----~~~~~v~~i~~h-~y~   78 (235)
T 3h7t_A            5 KKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTTK-----GTSVMAKKIYIV-RYH   78 (235)
T ss_dssp             EECCTTTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHTTCCGGGEEEEESCSBSSSS-----SEEEEEEEEEEC-SCB
T ss_pred             EECCCCCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCCCCCCCeeEEEcCccccccC-----CceeeeeeEEee-ecC
Confidence            56788999999999988888999999999999999999987777899999999887632     478899999999 999


Q ss_pred             CCCCCCceEEEEECCCcccCC-CeeeeecCCCCC-CCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhh
Q psy15052        219 FFTYEYDLALVRLETPVEFAP-NIVPICLPGSDD-LLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~-~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      .....||||||+|++|+.|++ .++|||||.... ...+..++++|||.+...+ ..+..|+++.+++++.++|+..+..
T Consensus        79 ~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  158 (235)
T 3h7t_A           79 PLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQ  158 (235)
T ss_dssp             TTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhh
Confidence            989999999999999999999 999999998763 5678999999999987665 6788999999999999999999876


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                      ......+.++||||+...+..+.|+|||||||++++.     |+||+|||.+|+. +.|++||||+.|++||+++++..
T Consensus       159 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-----l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~~~  231 (235)
T 3h7t_A          159 IEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNGT-----LVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIISGK  231 (235)
T ss_dssp             TTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETTE-----EEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHTTC
T ss_pred             cccCccccCCeEecCCCCCCCccccCCCCCceeeCCe-----EEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHhCC
Confidence            4433458899999997777899999999999999543     9999999999986 88999999999999999998754

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=6.7e-50  Score=370.59  Aligned_cols=226  Identities=26%  Similarity=0.494  Sum_probs=188.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-----CCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-----LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-----~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ..|.+++|||+|+|+.  .+.|+||||+++||||||||+...     ....+.|++|.++.....+   .+.+.|+++++
T Consensus         5 ~~a~~~~~Pw~v~l~~--~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~---~~~~~v~~i~~   79 (242)
T 2qy0_B            5 QKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK---LGNHPIRRVSV   79 (242)
T ss_dssp             EECCTTSSTTEEEEES--SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHH---HCCCCEEEEEE
T ss_pred             EECCCCCCCcEEEEcc--CCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeecccccccc---ccceeEEEEEE
Confidence            5688999999999975  357999999999999999999642     3456889999887643221   24568999999


Q ss_pred             CCCCCCC---CCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhH
Q psy15052        214 HPKYNFF---TYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKC  289 (422)
Q Consensus       214 Hp~y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C  289 (422)
                      ||+|+..   ...||||||||++|+.|+++++|||||.... ...+..++++|||.+...  .+..|+++.+++++.+.|
T Consensus        80 Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~L~~~~~~~~~~~~C  157 (242)
T 2qy0_B           80 HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQAC  157 (242)
T ss_dssp             CTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCHHHH
T ss_pred             CCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc--CCccceEEEEEEeCHHHH
Confidence            9999865   6789999999999999999999999997654 346889999999987643  578899999999999999


Q ss_pred             HHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceee-cCCCcEEEeeEEeecccccCCCCCceeeeccccccccc
Q psy15052        290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       290 ~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~-~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      +..+........+.+.||||+...+..+.|+|||||||++. +.+++|+|+||+|||.+|+.  .|++||||+.|++||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~WI~  235 (242)
T 2qy0_B          158 ENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIK  235 (242)
T ss_dssp             HHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHHH
T ss_pred             HHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHH
Confidence            98876533223478899999866567899999999999996 46789999999999999984  4899999999999999


Q ss_pred             ccCCC
Q psy15052        369 DTGDS  373 (422)
Q Consensus       369 ~~i~~  373 (422)
                      ++++.
T Consensus       236 ~~~~~  240 (242)
T 2qy0_B          236 KEMEE  240 (242)
T ss_dssp             HHTTC
T ss_pred             HHhhc
Confidence            99875

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=9e-50  Score=368.61  Aligned_cols=218  Identities=28%  Similarity=0.507  Sum_probs=189.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||+|+|+..+.++|+|+||+++||||||||+.    ..+.|++|.++......  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~   78 (237)
T 1ao5_A            5 FNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKNKLFQEEP--SAQHRLVSKSFPHPGFN   78 (237)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCC----SSCEEEESCCBSSSCCS--SCEECCEEEEEECTTSC
T ss_pred             eECCCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCC----CCCEEEecccccccCCC--CcEEEEEEEEEcCCCcC
Confidence            5678899999999998777889999999999999999995    46789999988754433  25788999999999998


Q ss_pred             CCCC-----------CCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccCh
Q psy15052        219 FFTY-----------EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~  286 (422)
                      ....           .||||||||++|+.|+++++|||||... ...+..++++|||.+... ...+..|+++.+++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~  157 (237)
T 1ao5_A           79 MSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE-PKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPN  157 (237)
T ss_dssp             GGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSC-CCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECH
T ss_pred             cccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCC-CCCCCEEEEEECCccCCCCCCCCCcccEEEEEecCh
Confidence            7554           8999999999999999999999999765 457899999999988765 45678899999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|++.+..     .+.+.||||+...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|++
T Consensus       158 ~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 1ao5_A          158 ENCAKVYLQ-----KVTDVMLCAGEMGGGKDTCRDDSGGPLICDG-----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNS  227 (237)
T ss_dssp             HHHHHHCSS-----CCCTTEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGGHH
T ss_pred             hHhhhhhcc-----cCCCCEEEEccCCCCCCCCCCCCcceEEECC-----EEeEEEeEcCCCCCCCCCCcEEEEHHHHHH
Confidence            999987743     3788999998445668999999999999953     599999999 78998889999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++|+.
T Consensus       228 WI~~~~~~  235 (237)
T 1ao5_A          228 WIKDTMMK  235 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998864

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=1.8e-49  Score=363.44  Aligned_cols=218  Identities=34%  Similarity=0.538  Sum_probs=190.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||||+|+..+.++|+|+||+++||||||||+.+.....+.|++|.++...     ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~-----~~~~~~v~~i~~hp~y~   79 (224)
T 1pq7_A            5 TSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYS   79 (224)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSSS-----SSEEECEEEEEECTTCB
T ss_pred             EECCCCCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCCCCCCceEEEeCcceecC-----CCEEEEEEEEEECCCCC
Confidence            5678999999999998767789999999999999999998766678999999988632     25789999999999998


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCC-CCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      ..  .||||||||++|+.++++++|||||... ....+..++++|||.+...+ ..+..|+++.+++++.++|+..+...
T Consensus        80 ~~--~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  157 (224)
T 1pq7_A           80 GN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS  157 (224)
T ss_dssp             TT--BTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTT
T ss_pred             CC--CCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCC
Confidence            76  7999999999999999999999999533 34678999999999987665 56778999999999999999887521


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                          .+.+.|||++...++.+.|+|||||||++.  ++  +|+||+|||.+|+..+.|++||||+.|++||+++|
T Consensus       158 ----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          158 ----AITNQMFCAGVSSGGKDSCQGDSGGPIVDS--SN--TLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             ----TSCTTEEEECCTTCCCBCCTTCTTCEEECT--TC--CEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             ----CCCCCeEEeecCCCCCCCCcCCCCcceECc--CC--eEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence                378899999866667899999999999985  22  69999999999998889999999999999999865

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=3.5e-49  Score=362.25  Aligned_cols=218  Identities=26%  Similarity=0.444  Sum_probs=188.1

Q ss_pred             CCCCCCCcCeEEEEEec--CC-CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKES--LG-RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~--~~-~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..|.+++|||||+|+..  +. ++|+|+||+++||||||||+.+    .+.|++|.++......  ..+.+.|+++++||
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp   78 (227)
T 1iau_A            5 HEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGAHNIKEQEP--TQQFIPVKRPIPHP   78 (227)
T ss_dssp             EECCTTSSTTEEEEEEECSSCEEEEEEEEEETTEEEECGGGCCS----EEEEEESCSBTTSCCT--TCEEEEEEEEEECT
T ss_pred             eECCCCCcCcEEEEEEECCCCceEEEEEEEcCCEEEECHHhCCC----ceEEEEccccccCCCC--ccEEEEEEEEECCC
Confidence            56788999999999863  32 6799999999999999999963    5899999988765433  26889999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+.
T Consensus        79 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~  158 (227)
T 1iau_A           79 AYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLR  158 (227)
T ss_dssp             TCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTT
T ss_pred             CCCCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhc
Confidence            999988999999999999999999999999997664 3578999999999987666778899999999999999998774


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..    ...+.|||++...+..+.|+|||||||++++     +|+||+|||  |+..+.|++||||+.|++||+++++.
T Consensus       159 ~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          159 HY----YDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             TT----CCTTTEEEESCTTSCCBCCTTCTTSEEEETT-----EEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             cc----cCCCcEEEeECCCCCCeeeecCCCchheEee-----EEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            32    2345599998766678999999999999953     699999998  87777899999999999999998753

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=1.8e-49  Score=368.66  Aligned_cols=229  Identities=25%  Similarity=0.412  Sum_probs=194.9

Q ss_pred             CCCCCCCcCeEEEEEecC-----CCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESL-----GRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKM  212 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~  212 (422)
                      ..+.+++|||+|+|+...     .++|+||||+++||||||||+.+. ....+.|++|.++......  ..+.+.|++++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~--~~~~~~v~~i~   82 (247)
T 3mhw_U            5 EFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQ--GEMKFEVENLI   82 (247)
T ss_dssp             EECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCCT--TCEEEEEEEEE
T ss_pred             EECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccccccCCCC--CCEEEEEEEEE
Confidence            567889999999998653     246999999999999999999764 3467999999988776543  25889999999


Q ss_pred             ECCCCCCCC--CCCceEEEEECCC----cccCCCeeeeecCCCC-CCCCCCeEEEEEecccCCCCC-CCCCceEEEEecc
Q psy15052        213 VHPKYNFFT--YEYDLALVRLETP----VEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIV  284 (422)
Q Consensus       213 iHp~y~~~~--~~nDIALLkL~~p----v~~s~~v~PicLp~~~-~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~  284 (422)
                      +||+|+...  ..||||||||++|    +.++++++|||||... ....+..++++|||.+..... .+..|+.+.++++
T Consensus        83 ~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~  162 (247)
T 3mhw_U           83 LHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLI  162 (247)
T ss_dssp             ECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEE
T ss_pred             ECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEE
Confidence            999998766  5699999999999    7889999999999864 345689999999998765543 5788999999999


Q ss_pred             ChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccc
Q psy15052        285 SNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV  364 (422)
Q Consensus       285 ~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~  364 (422)
                      +.++|+..+...   ..+.+.|||++...+..+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|+
T Consensus       163 ~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~-~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~  238 (247)
T 3mhw_U          163 SHRECQQPHYYG---SEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFL  238 (247)
T ss_dssp             CHHHHTSTTTTG---GGCCTTEEEEECTTSCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSBTTBCEEEEEGGGCH
T ss_pred             ChHHhcCccccC---CcCCCCeEecCCCCCCCccCCCCCCCeEEEE-ECCCEEEEEEEEECCCCCCCCCCeEEEEHHHHH
Confidence            999998753221   2378899999977777899999999999998 578999999999999999888999999999999


Q ss_pred             ccccccCCC
Q psy15052        365 PWVLDTGDS  373 (422)
Q Consensus       365 ~WI~~~i~~  373 (422)
                      +||+++++.
T Consensus       239 ~WI~~~~~e  247 (247)
T 3mhw_U          239 PWIRSHTKE  247 (247)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999998863

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=2.1e-49  Score=363.29  Aligned_cols=216  Identities=28%  Similarity=0.534  Sum_probs=185.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC-
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY-  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y-  217 (422)
                      .+|.+++|||+|+|+..+.++|+|+||+++||||||||+.    ..+.|++|.+++.....  ..+.+.|+++++||+| 
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~   78 (225)
T 1npm_A            5 RECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK----QKYSVRLGDHSLQSRDQ--PEQEIQVAQSIQHPCYN   78 (225)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTC--C--CCEEECEEEEEECTTCC
T ss_pred             EECCCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCC----CCceEEEeeeEcCCCCC--CcEEEEEEEEEECCCCC
Confidence            5678999999999987666789999999999999999985    45789999988765433  2588999999999999 


Q ss_pred             CC--CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccC-CCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        218 NF--FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       218 ~~--~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~-~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +.  ....||||||||++|+.|+++++|||||... ...+..++++|||.+. ..+..+..|+++.+++++.++|++.+.
T Consensus        79 ~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  157 (225)
T 1npm_A           79 NSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC-PKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP  157 (225)
T ss_dssp             SSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHST
T ss_pred             CCCccCccccEEEEeeCCcccCCCceeceECCCCC-CCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHHhC
Confidence            55  6678999999999999999999999999765 4578999999999874 345567899999999999999998875


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      .     .+.+.||||+... +.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||++|++||+++|+
T Consensus       158 ~-----~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          158 G-----KITEGMVCAGSSN-GADTCQGDSGGPLVCDG-----MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             T-----TCCTTEEEEECTT-CCBCCTTCTTCEEEETT-----EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             C-----CCCCCEEeecCCC-CCeecCCCCCchheECC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            3     3788999998544 67999999999999853     599999999 679888899999999999999998763

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=1.9e-49  Score=366.35  Aligned_cols=218  Identities=26%  Similarity=0.456  Sum_probs=188.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||||+|+..+.++|+|+||+++||||||||+.+    ...|++|.++.......  .+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~--~~~~~v~~~~~Hp~y~   78 (237)
T 2zch_P            5 WECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN----KSVILLGRHSLFHPEDT--GQVFQVSHSFPHPLYD   78 (237)
T ss_dssp             EECCTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCS----SCEEEESCSBSSSCCTT--CEEEEEEEEEECTTSC
T ss_pred             EECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCC----CceEEEecccccCCCCC--cEEEEEEEEecCCCcc
Confidence            56889999999999977677899999999999999999975    34689999887654432  5889999999999998


Q ss_pred             CCCC-----------CCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCC-CCCCceEEEEeccCh
Q psy15052        219 FFTY-----------EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS-LPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~v~v~~~  286 (422)
                      ....           .||||||||++|+.|+++++|||||... ...+..++++|||.+...+. .+..|+++.+++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~  157 (237)
T 2zch_P           79 MSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQE-PALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISN  157 (237)
T ss_dssp             GGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSC-CCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECH
T ss_pred             hhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCC-CCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCH
Confidence            7544           7899999999999999999999999764 45688999999998876543 378899999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|++.+..     .+.+.||||+...++.+.|+|||||||++++     +|+||+|||. +|+..+.|++||||++|++
T Consensus       158 ~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 2zch_P          158 DVCAQVHPQ-----KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-----VLQGITSWGSEPCALPERPSLYTKVVHYRK  227 (237)
T ss_dssp             HHHHHHCSS-----BCCTTEEEEECTTCSCBCCTTCTTCEEESSS-----SEEEEEEECCSSTTCTTCCEEEEEGGGGHH
T ss_pred             HHhcccccC-----CCCceEEeecCCCCCCcccCCCccCeEEECC-----EEEEEEEeCcCCCCCCCCCcEEEEHHHHHH
Confidence            999987643     3788999999766678999999999999864     4999999998 7988889999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++|+.
T Consensus       228 WI~~~i~~  235 (237)
T 2zch_P          228 WIKDTIVA  235 (237)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998864

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-49  Score=365.29  Aligned_cols=218  Identities=27%  Similarity=0.525  Sum_probs=189.4

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||||+|+..+.++|+|+||+++||||||||+.+    .+.|++|.+++.....  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~--~~~~~~v~~~~~hp~y~   78 (238)
T 1spj_A            5 WECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISD----NYQLWLGRHNLFDDEN--TAQFVHVSESFPHPGFN   78 (238)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS----SEEEEESCSBTTSCCT--TCEEECEEEEEECTTSC
T ss_pred             EECCCCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCCC----CceEEEEeccccCCCC--CceEEEEEEEEcCCCcc
Confidence            56889999999999987677899999999999999999963    5789999988765433  25889999999999998


Q ss_pred             -----------CCCCCCceEEEEECCCcc-cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccC
Q psy15052        219 -----------FFTYEYDLALVRLETPVE-FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVS  285 (422)
Q Consensus       219 -----------~~~~~nDIALLkL~~pv~-~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~  285 (422)
                                 .....||||||||++|+. ++++++|||||... ...+..++++|||.+...+ ..+..|+++.+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~  157 (238)
T 1spj_A           79 MSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEE-PEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILP  157 (238)
T ss_dssp             GGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEEC
T ss_pred             ccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCC-CCCCCEEEEEecCCCCCCCCCCcCcccEEEEeecC
Confidence                       456789999999999998 99999999999765 3568999999999876544 567889999999999


Q ss_pred             hhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeeccccc
Q psy15052        286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFV  364 (422)
Q Consensus       286 ~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~  364 (422)
                      .++|++.+..     .+.+.||||+...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|+
T Consensus       158 ~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~  227 (238)
T 1spj_A          158 NDECKKAHVQ-----KVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-----VLQGVTSWGYVPCGTPNKPSVAVRVLSYV  227 (238)
T ss_dssp             HHHHHHHCSS-----CCCTTEEEEECTTCSSBCCTTCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGGH
T ss_pred             HHHhhhhccC-----CCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHhH
Confidence            9999987643     2688999999766678999999999999853     699999999 6898888999999999999


Q ss_pred             ccccccCCC
Q psy15052        365 PWVLDTGDS  373 (422)
Q Consensus       365 ~WI~~~i~~  373 (422)
                      +||+++|+.
T Consensus       228 ~WI~~~i~~  236 (238)
T 1spj_A          228 KWIEDTIAE  236 (238)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999998864

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=3.2e-49  Score=361.78  Aligned_cols=215  Identities=27%  Similarity=0.521  Sum_probs=187.5

Q ss_pred             CCCCCCCcCeEEEEEecCCC-CceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGR-PVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~-~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      .+|.+++|||||+|+.. .+ +|+|+||+++||||||||+.    ..+.|++|..++...    ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~-~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~----~~~~~~v~~~~~Hp~y   75 (224)
T 2qxi_A            5 APCARGSHPWQVALLSG-NQLHCGGVLVNERWVLTAAHCKM----NEYTVHLGSDTLGDR----RAQRIKASKSFRHPGY   75 (224)
T ss_dssp             EECCTTSCTTEEEEEET-TEEEEEEEEEETTEEEECGGGCC----SCEEEEESCSBTTCT----TSEEEEECEEEECTTC
T ss_pred             eECCCCCCCCEEEEeeC-CCeEEEEEEecCCEEEEhHHcCC----CCcEEEEeeeecCCC----ccEEEEEEEEEECCCC
Confidence            56788999999999653 44 79999999999999999984    568999999877522    2578899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCC-CCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      +.....||||||||++|+.|+++++|||||.... ..+..++++|||.+.. ....+..|+++.+++++.++|++.+.. 
T Consensus        76 ~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-  153 (224)
T 2qxi_A           76 STQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE-PPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD-  153 (224)
T ss_dssp             CTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGG-
T ss_pred             CCCCCcCcEEEEEeCCCCcCCCceeeEECCCCCC-CCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcC-
Confidence            9988899999999999999999999999997653 5689999999998753 345678899999999999999988753 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                          .+.+.||||+...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||++|++||+++++.
T Consensus       154 ----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  222 (224)
T 2qxi_A          154 ----LLENSMLCAGIPDSKKNACNGDSGGPLVCRG-----TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK  222 (224)
T ss_dssp             ----GCCTTEEEEECTTCCCBCCTTCTTCEEEETT-----EEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             ----cCCCCeEEecCCCCCCccCCCCccccEEECC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence                3788999999766678999999999999953     599999999 6898888999999999999999998863

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=5.2e-49  Score=365.77  Aligned_cols=227  Identities=27%  Similarity=0.495  Sum_probs=191.3

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGV  208 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V  208 (422)
                      ++.++   ..|.+++|||+|+|+.. +.++|+|+||+++||||||||+... ....+.|++|.++......  ..+.+.|
T Consensus        17 rIvgG---~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v   91 (247)
T 1ddj_A           17 RVVGG---CVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEP--HVQEIEV   91 (247)
T ss_dssp             TCTTC---EECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSCCT--TCEEEEE
T ss_pred             CcCCC---EECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCccCC--ceEEEEe
Confidence            56666   67889999999999864 3567999999999999999999763 3467899999987654332  2578899


Q ss_pred             EEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChh
Q psy15052        209 VKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE  287 (422)
Q Consensus       209 ~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~  287 (422)
                      .++++||.      .||||||||++|+.|+++++|||||.... ...+..++++|||.+... ..+..|+++.+++++.+
T Consensus        92 ~~~~~hp~------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~i~~~~  164 (247)
T 1ddj_A           92 SRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT-FGAGLLKEAQLPVIENK  164 (247)
T ss_dssp             EEEEECTT------SCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSS-TTTTBCEEEEEEEECHH
T ss_pred             eeEEcCCC------CCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCC-CCCccceEEeeeecCHH
Confidence            99999996      58999999999999999999999997654 456889999999987543 34678999999999999


Q ss_pred             hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       288 ~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      .|++.....   ..+.+.||||+...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||
T Consensus       165 ~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  240 (247)
T 1ddj_A          165 VCNRYEFLN---GRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI  240 (247)
T ss_dssp             HHTSTTTTT---TCCCTTEEEESCSSSCCCBCCSCTTCEEEEE-CSSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHH
T ss_pred             HhcchhccC---CCCcCCeEeecCCCCCCccccCcCcCcEEEE-ECCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHH
Confidence            998642211   1378899999866667899999999999998 568999999999999999888999999999999999


Q ss_pred             cccCCC
Q psy15052        368 LDTGDS  373 (422)
Q Consensus       368 ~~~i~~  373 (422)
                      +++|+.
T Consensus       241 ~~~~~~  246 (247)
T 1ddj_A          241 EGVMRN  246 (247)
T ss_dssp             HHHHHT
T ss_pred             HHHhhc
Confidence            998864

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=4.2e-49  Score=360.69  Aligned_cols=217  Identities=35%  Similarity=0.609  Sum_probs=191.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..+.+++|||+|+|. .+.++|+|+||+++||||||||+.    ..+.|++|..+.......  .+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~-~~~~~C~GtLI~~~~VLTAAhC~~----~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~hp~y~   77 (223)
T 4i8h_A            5 YTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNINVVEGN--EQFISASKSIVHPSYN   77 (223)
T ss_dssp             EECCTTSSTTEEEEE-SSSEEEEEEECSSSEEEECGGGCC----SSCEEEESCSSTTSCCSC--CEEEEEEEEEECTTCC
T ss_pred             EECCCCCCCeEEEec-CCCcEEEEEEEcCCEEEecHHhCC----CCcEEEEccccccccCCC--cEEEEEeEEEECcCCC
Confidence            568889999999998 346789999999999999999996    367899999887644432  5788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||... ...+..++++|||.+...+ ..+..|+++.+.+++.++|+..+..  
T Consensus        78 ~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  154 (223)
T 4i8h_A           78 SNTLNNDIMLIKLKSAASLNSRVASISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--  154 (223)
T ss_dssp             TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT--
T ss_pred             CCCCcCCEEEEEECCcCcCCCceeceECCCCC-CCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCC--
Confidence            99899999999999999999999999999766 4678999999999876543 4578899999999999999988753  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                         .+.+.|||++...+..+.|+|||||||++++     +|+||+|||.+|+..+.|++||||+.|++||+++|++
T Consensus       155 ---~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T 4i8h_A          155 ---QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             ---TCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             ---CCCCCeEeccCCCCCCccCCCCCCCcEEECC-----EEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence               3788999998767788999999999999964     5999999999999888999999999999999998864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=3.7e-49  Score=364.24  Aligned_cols=223  Identities=26%  Similarity=0.454  Sum_probs=191.6

Q ss_pred             CCCCCCCcCeEEEEEecC-C---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL-G---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+... +   ++|+|+||+++||||||||+..  ...+.|++|.+++......  .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~--~~~~~v~~i~~h   80 (236)
T 1elt_A            5 RVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLGEHNLNTNEGK--EQIMTVNSVFIH   80 (236)
T ss_dssp             EECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSS--CCCEEEEESCSBTTSCCSC--CEEECEEEEEEC
T ss_pred             EECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCC--cCceEEEEccccCCCCCCC--cEEEEEEEEEEC
Confidence            567889999999998642 2   5799999999999999999975  3678999999987654432  588999999999


Q ss_pred             CCCCCCCC--CCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTY--EYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+....  .||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+++++.+.|+.
T Consensus        81 p~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  160 (236)
T 1elt_A           81 SGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSS  160 (236)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTS
T ss_pred             CCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhcc
Confidence            99998776  89999999999999999999999998764 4568899999999987766778899999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...   ..+.+.|||++. . +.+.|+|||||||++. .+++|+|+||+||+.  +|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~---~~~~~~~~Ca~~-~-~~~~C~GDSGgPL~~~-~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  234 (236)
T 1elt_A          161 SGWWG---STVKTTMVCAGG-G-ANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNG  234 (236)
T ss_dssp             TTTTG---GGSCTTEEEECC-S-SCBCCTTCTTCEEEEE-ETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             ccccC---CcCCcceEEecC-C-CCccCCCCCCCeeEEE-ECCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHh
Confidence            53211   137889999983 3 4789999999999998 478999999999985  79877899999999999999998


Q ss_pred             cC
Q psy15052        370 TG  371 (422)
Q Consensus       370 ~i  371 (422)
                      +|
T Consensus       235 ~i  236 (236)
T 1elt_A          235 IM  236 (236)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=7.6e-49  Score=360.01  Aligned_cols=217  Identities=30%  Similarity=0.471  Sum_probs=187.1

Q ss_pred             CCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      .+|.+++|||||+|+...   .++|+|+||+++||||||||+..    .+.|++|.++......  ..+.+.|+++++||
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp   78 (227)
T 1euf_A            5 HEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGAHNIMERER--TQQVIPVRRPIPHP   78 (227)
T ss_dssp             EECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE----EEEEEESCSBTTSCCT--TCEEEEEEEEEECT
T ss_pred             eECCCCCcCCEEEEEEeCCCCceEEEEEEeeCCEEEECHHHCCC----CcEEEEcccccCCCCC--ccEEEEEEEEEeCC
Confidence            567889999999998642   35799999999999999999963    6899999988765433  25889999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+..+...+..|+++.+++++.++|+..+.
T Consensus        79 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~  158 (227)
T 1euf_A           79 DYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFK  158 (227)
T ss_dssp             TCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCT
T ss_pred             CCCCCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHhhc
Confidence            999988999999999999999999999999997653 4578999999999987766678899999999999999998664


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .     .+.+.||||+...+....|+|||||||++++     +|+||+|||  |+..+.|++||||+.|++||+++|+.
T Consensus       159 ~-----~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~-----~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~~  225 (227)
T 1euf_A          159 N-----YIPFTQICAGDPSKRKNSFSGDSGGPLVCNG-----VAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMRR  225 (227)
T ss_dssp             T-----CCTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC-
T ss_pred             C-----cCCCcEEEccCCCCCCcccccCCCCceEECC-----EEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHhh
Confidence            3     3678899998655445678999999999963     699999998  87677899999999999999999864

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=9.1e-49  Score=361.17  Aligned_cols=219  Identities=24%  Similarity=0.346  Sum_probs=187.5

Q ss_pred             CCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCC--CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCC
Q psy15052        143 TTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSL--LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF  219 (422)
Q Consensus       143 ~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~  219 (422)
                      +++|||||+|+.. ..++|+||||+++||||||||+.+.  ....+.|++|.++..........+.+.|+++++||.   
T Consensus         6 ~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~---   82 (234)
T 2asu_B            6 PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPS---   82 (234)
T ss_dssp             ECCCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECST---
T ss_pred             cCCCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCC---
Confidence            5789999999876 4568999999999999999999753  356789999998876543223368899999999997   


Q ss_pred             CCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        220 FTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       220 ~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                         .||||||||++|+.|+++++|||||.... ...+..++++|||.+...+ .+..|+++.+++++.++|+..+..   
T Consensus        83 ---~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~---  155 (234)
T 2asu_B           83 ---GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG-NDTVLNVALLNVISNQECNIKHRG---  155 (234)
T ss_dssp             ---TCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS-CTTBCEEEEEEEECHHHHHHHTTT---
T ss_pred             ---CCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC-CCccceEEEeeEEcHHHcccccCC---
Confidence               48999999999999999999999997653 4568899999999886544 467899999999999999987732   


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                        .+.+.|||++...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++..
T Consensus       156 --~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  228 (234)
T 2asu_B          156 --RVRESEMCTEGLLAPVGACEGDYGGPLACF-THNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLG  228 (234)
T ss_dssp             --CCCTTEEEECCCSSCCBCCTTCTTCEEEEE-ETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC---
T ss_pred             --ccCcceEeecCCCCCCeeccCCCCCceEEE-ECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhcc
Confidence              378899999876667899999999999998 4789999999999999998889999999999999999998754

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=1.2e-48  Score=357.89  Aligned_cols=216  Identities=27%  Similarity=0.463  Sum_probs=185.4

Q ss_pred             CCCCCCCcCeEEEEEec--C-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKES--L-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~--~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..+.+++|||||+|+..  + .++|+|+||+++||||||||+.+    .+.|++|.++......  ..+.+.|+++++||
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp   78 (224)
T 1cgh_A            5 RESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGAHNIQRREN--TQQHITARRAIRHP   78 (224)
T ss_dssp             EECCTTSSTTEEEEEESTTTTSCEEEEEEEETTEEEECGGGCCS----SEEEEESCSBTTSCCT--TCEEEEEEEEEECT
T ss_pred             EECCCCCCCcEEEEEEECCCCCeEEEEEEeeCCEEEEhHHhCCC----CCEEEEeecccCCCCC--ccEEEEEEEEEcCC
Confidence            56788999999999864  2 36899999999999999999964    5899999988765433  25889999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+. .+..+..|+++.+++++.++|+..+.
T Consensus        79 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~i~~~~~C~~~~~  157 (224)
T 1cgh_A           79 QYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDRQCLRIFG  157 (224)
T ss_dssp             TCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHHHHHHHCT
T ss_pred             CCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCC-CCCCCCcceEEEEEeeCHHHHHHHhC
Confidence            999988999999999999999999999999997654 4578999999999887 44567899999999999999998773


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .     ...+.|||++...+..+.|+|||||||++++     +|+||+|||. | ..+.|++||||+.|++||+++|++
T Consensus       158 ~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~-~-~~~~p~vyt~V~~~~~WI~~~~~s  224 (224)
T 1cgh_A          158 S-----YDPRRQICVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGK-S-SGVPPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             T-----CCTTTEEEECCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECC-T-TCCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             c-----CCCcceEeeccCCCCCeEeeCCCccceEEcc-----EEEEEEEEEC-C-CCCCCeEEEEHHHhHHHHHHHhhC
Confidence            2     2456699998666678999999999999953     6999999997 3 245699999999999999998753

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=1.5e-48  Score=361.14  Aligned_cols=226  Identities=22%  Similarity=0.292  Sum_probs=192.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+ +|||+|+|+..+.++|+|+||+++||||||||+.......+.|++|.++.....+....+.+.|++++.||+  
T Consensus         5 ~~a~~-~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~p~--   81 (240)
T 1si5_H            5 IPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPE--   81 (240)
T ss_dssp             EECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSS--
T ss_pred             eeCCC-CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEcCCC--
Confidence            55777 999999999887778999999999999999999876677899999999887653333468899999999997  


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                          .||||||||++|+.|+++++|||||.... ...+..++++|||.+.... .+..|+++.+++++.+.|+..+... 
T Consensus        82 ----~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~-  155 (240)
T 1si5_H           82 ----GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGK-  155 (240)
T ss_dssp             ----TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS-CCCBCEEEEEEEECGGGTCC------
T ss_pred             ----CCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEeecCHHHhhhhhcCC-
Confidence                68999999999999999999999997653 4568899999999876543 5678999999999999998776421 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGP  376 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~p  376 (422)
                        ..+.+.|||++...++.+.|+|||||||++. .+++|+|+||+|||.+|+..+.|++||||+.|++||+++++....
T Consensus       156 --~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~~  231 (240)
T 1si5_H          156 --VTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKV  231 (240)
T ss_dssp             ----CCTTEEEEECSSSCCBCCTTCTTCEEEEE-CSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSCCC
T ss_pred             --ccCCCCEEeecCCCCCCEeccCCCCCcEEEE-ECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhccCc
Confidence              1268899999976667899999999999998 478999999999999998888999999999999999999976543

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=2.2e-49  Score=382.91  Aligned_cols=231  Identities=25%  Similarity=0.477  Sum_probs=190.6

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-----CCceEEEEEeeeecccCCCCCCcE
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-----LTSQIKIRVGEYDFSKLEEPYPYQ  204 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-----~~~~~~V~lG~~~~~~~~~~~~~~  204 (422)
                      .++.++   ..|.+++|||+|+|..  .+.|+|+||+++||||||||+...     ....+.|++|.++.....+   .+
T Consensus        88 ~rIvgG---~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~~~~~---~~  159 (329)
T 1md8_A           88 QRIIGG---QKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK---LG  159 (329)
T ss_dssp             --CBSC---CBCCTTSCTTEEEEES--SSEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCSBHHHHHH---HC
T ss_pred             ccccCC---EECCCCCCCCeEeecc--CCCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEecccccccccc---cc
Confidence            456666   6789999999999974  357999999999999999999742     2456789999887643221   24


Q ss_pred             EEeEEEEEECCCCCCC---CCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEE
Q psy15052        205 ERGVVKKMVHPKYNFF---TYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVT  280 (422)
Q Consensus       205 ~~~V~~i~iHp~y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  280 (422)
                      .+.|+++++||+|+..   ...||||||||++|+.|+++|+|||||.... ...+..++++|||.+...  .+..|+++.
T Consensus       160 ~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~--~~~~L~~~~  237 (329)
T 1md8_A          160 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVR  237 (329)
T ss_dssp             CCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSS--BCSBCEEEE
T ss_pred             ceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCC--CCccceEEE
Confidence            5689999999999864   6789999999999999999999999997654 346889999999987643  578899999


Q ss_pred             EeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceee-cCCCcEEEeeEEeecccccCCCCCceeee
Q psy15052        281 VPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTR  359 (422)
Q Consensus       281 v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~-~~~~~~~lvGV~S~g~~C~~~~~p~vyt~  359 (422)
                      +++++.++|++.+........+.++||||+...++.++|+|||||||++. +.+++|+|+||+|||.+|+.  .|+||||
T Consensus       238 v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~~--~~gvyT~  315 (329)
T 1md8_A          238 LPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTK  315 (329)
T ss_dssp             EEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSSSS--SCEEEEE
T ss_pred             EEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCCcCC--CCcEEEE
Confidence            99999999998876432223478899999866567899999999999996 46789999999999999984  4899999


Q ss_pred             cccccccccccCC
Q psy15052        360 ISKFVPWVLDTGD  372 (422)
Q Consensus       360 V~~y~~WI~~~i~  372 (422)
                      |+.|++||+++|+
T Consensus       316 V~~y~~WI~~~i~  328 (329)
T 1md8_A          316 VLNYVDWIKKEME  328 (329)
T ss_dssp             GGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=7.5e-50  Score=369.82  Aligned_cols=228  Identities=28%  Similarity=0.451  Sum_probs=188.1

Q ss_pred             CCCCCCCcCeEEEEEec-CC---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKES-LG---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~-~~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+.. .+   ++|+|+||+++||||||||+..  ...+.|++|.++..........+.+.|+++++|
T Consensus         3 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~--~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~H   80 (240)
T 1fon_A            3 EDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVH   80 (240)
T ss_dssp             ------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCT--TSCEEEEEEEEETTEEEEEEEEEEECTTSEEEC
T ss_pred             ccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCC--CCceEEEeeeeeccccCCCceeEeeeeeEEEEC
Confidence            56788999999999863 22   6799999999999999999976  367899999998764322111267889999999


Q ss_pred             CCCCCCCCC--CceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYE--YDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~--nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+.....  ||||||||++|+.|+++++|||||.... ...+..++++|||.+..++..+..|+++.+++++.++|++
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (240)
T 1fon_A           81 PLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTS
T ss_pred             CCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhcc
Confidence            999988777  9999999999999999999999998754 4568899999999987767778899999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...   ..+.+.|||++. . +.+.|+|||||||++...+++|+|+||+||+.  +|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~---~~~~~~~~Ca~~-~-~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  235 (240)
T 1fon_A          161 WDWWG---ITVKKTMVCAGG-D-TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE  235 (240)
T ss_dssp             TTTTG---GGCCTTEEEECC-S-SSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHH
T ss_pred             ceecC---CccccceEeecC-C-CCcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHH
Confidence            53211   137889999983 3 38899999999999986588999999999996  79877899999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      ++++
T Consensus       236 ~~~~  239 (240)
T 1fon_A          236 TIAS  239 (240)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8753

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=7.7e-49  Score=361.90  Aligned_cols=216  Identities=26%  Similarity=0.459  Sum_probs=187.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|+.  +++|+|+||+++||||||||+.    ..+.|++|.++......  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~   76 (235)
T 1ton_A            5 YKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYS----NNYQVLLGRNNLFKDEP--FAQRRLVRQSFRHPDYI   76 (235)
T ss_dssp             EECCTTSCTTEEEEES--SSEEEEEEEETTEEEECGGGCC----SCCEEEESCSBTTSCCT--TCEEECEEEEEECTTCC
T ss_pred             EECCCCCcCcEEEEcc--CCeEEEEEecCCEEEEcHHhCC----CCcEEEeCcccccCCCC--cceEEEEEEEEeCCCCc
Confidence            5678899999999986  3889999999999999999994    46789999988764333  25788999999999998


Q ss_pred             C-----------CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccCh
Q psy15052        219 F-----------FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~-----------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~  286 (422)
                      .           ....||||||||++|+.|+++++|||||... ...+..++++|||.+... ...+..|+++.+++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~  155 (235)
T 1ton_A           77 PLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE-PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSN  155 (235)
T ss_dssp             CC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECG
T ss_pred             ccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCC-CCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCH
Confidence            7           6778999999999999999999999999765 456899999999988654 45678899999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|+..+..     .+.+.||||+..+++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||++|++
T Consensus       156 ~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  225 (235)
T 1ton_A          156 EKCIETYKD-----NVTDVMLCAGEMEGGKDTCAGDSGGPLICDG-----VLQGITSGGATPCAKPKTPAIYAKLIKFTS  225 (235)
T ss_dssp             GGCGGGGST-----TGGGGEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEECCCCSSCSCTTCCEEEEEGGGGHH
T ss_pred             HHHHHHhcC-----cCCCCeEeeccCCCCCcCCCCCCccccEECC-----EEEEEEeeCCCCCCCCCCCeEEEEHHHHHH
Confidence            999987743     3788999999656678999999999999853     599999999 67988889999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++++.
T Consensus       226 WI~~~~~~  233 (235)
T 1ton_A          226 WIKKVMKE  233 (235)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99998753

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=2.4e-49  Score=366.46  Aligned_cols=218  Identities=29%  Similarity=0.510  Sum_probs=168.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|..++|||+|+|+..+.++|+|+||+++||||||||+.    ..+.|++|.+++.....  ..+.+.|+++++||+|+
T Consensus         8 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~   81 (240)
T 1sgf_A            8 QVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKNNFLEDEP--SDQHRLVSKAIPHPDFN   81 (240)
T ss_dssp             -----CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCC----SCCEEEECC----C-CT--TCEEEEEEEEEECTTSC
T ss_pred             eECCCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCC----CCceEEeCCcccccCCC--CceEEEEEEEEcCCCCc
Confidence            6678899999999964456789999999999999999996    35789999988754332  25788999999999998


Q ss_pred             CC-----------CCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccCh
Q psy15052        219 FF-----------TYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~~-----------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~  286 (422)
                      ..           ...||||||||++|+.|+++++|||||... ...+..++++|||.+... ...+..|+++.+++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~  160 (240)
T 1sgf_A           82 MSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE-PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPN  160 (240)
T ss_dssp             GGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSC-CCTTCEEEEC-------C---------CEEEEEECT
T ss_pred             ccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCC-CCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCH
Confidence            65           678999999999999999999999999765 456899999999987643 35578899999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|+..+..     .+.+.|||++...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|++
T Consensus       161 ~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~  230 (240)
T 1sgf_A          161 EDCDKAHEM-----KVTDAMLCAGEMDGGSYTCEHDSGGPLICDG-----ILQGITSWGPEPCGEPTEPSVYTKLIKFSS  230 (240)
T ss_dssp             HHHHTTCSS-----BCCTTEEEEEECSSSEEECCCCTTCEEEETT-----EEEEEECCCCSSCCCSSCCEEEEESGGGHH
T ss_pred             HHhhhhhCC-----CcCCCeEeEccCCCCCCCCCCCCcCcEEEcc-----EEEEEEEECCCCCCCCCCCeEEEeHHHHHH
Confidence            999876632     3788999999766678899999999999853     599999999 67988889999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++|+.
T Consensus       231 WI~~~~~~  238 (240)
T 1sgf_A          231 WIRETMAN  238 (240)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99998864

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=5e-49  Score=368.16  Aligned_cols=229  Identities=29%  Similarity=0.536  Sum_probs=191.2

Q ss_pred             CCCCCCCcCeEEEEEecC--CCCceEEEccCCEEeecccCcCC------CCCceEEEEEeeeecccCCCCCCcEEEeEEE
Q psy15052        139 SSKNTTQRPYVKPLKESL--GRPVNVYSNNEKVDDFSTESVNS------LLTSQIKIRVGEYDFSKLEEPYPYQERGVVK  210 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTAAhCv~~------~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~  210 (422)
                      ..|.+++|||+|+|+...  .++|+||||+++||||||||+..      .....+.|++|.++....... ..+...|++
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~-~~~~~~v~~   83 (259)
T 3rm2_H            5 SDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERN-IEKISMLEK   83 (259)
T ss_dssp             EECCTTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTT-TCEEEEEEE
T ss_pred             EECCCCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccC-cceeeEEEE
Confidence            568899999999997543  45799999999999999999952      345678999999887554432 245667999


Q ss_pred             EEECCCCC-CCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCC------CCCCCceEE
Q psy15052        211 KMVHPKYN-FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGG------SLPPVLQKV  279 (422)
Q Consensus       211 i~iHp~y~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~------~~~~~L~~~  279 (422)
                      +++||+|+ .....||||||||++|+.|+++++|||||....    ...+..++++|||.+....      ..+..|+++
T Consensus        84 i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l~~~  163 (259)
T 3rm2_H           84 IYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV  163 (259)
T ss_dssp             EEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBCEEE
T ss_pred             EEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccceEE
Confidence            99999998 556789999999999999999999999997542    2468899999999876432      226789999


Q ss_pred             EEeccChhhHHHHHhhcCCcccccCceEEEeecC---CCCCCCcCCCCCCceeecC-CCcEEEeeEEeecccccCCCCCc
Q psy15052        280 TVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDN---GGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPG  355 (422)
Q Consensus       280 ~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~---~~~~~C~GDSGgPLv~~~~-~~~~~lvGV~S~g~~C~~~~~p~  355 (422)
                      .+++++.+.|+..+..     .+.+.||||+...   ...+.|+|||||||++.+. +++|+|+||+|||.+|+..+.|+
T Consensus       164 ~~~~~~~~~C~~~~~~-----~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~  238 (259)
T 3rm2_H          164 NLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYG  238 (259)
T ss_dssp             EEEBCCHHHHHHTCSS-----CCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCE
T ss_pred             EEEEeCHHHhhhhhcc-----cCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCe
Confidence            9999999999987632     3789999998532   2358999999999999843 78999999999999999888999


Q ss_pred             eeeecccccccccccCCC
Q psy15052        356 VCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       356 vyt~V~~y~~WI~~~i~~  373 (422)
                      +||||+.|++||+++|+.
T Consensus       239 vyt~V~~~~~WI~~~i~~  256 (259)
T 3rm2_H          239 FYTHVFRLKKWIQKVIDQ  256 (259)
T ss_dssp             EEEETGGGHHHHHHHHHH
T ss_pred             EEEEHHHhHHHHHHHHHH
Confidence            999999999999998864

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=2.5e-48  Score=356.45  Aligned_cols=217  Identities=26%  Similarity=0.419  Sum_probs=190.5

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .++.+++|||||+|+...    .++|+|+||+++||||||||+.    ..+.|++|.++.......  .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~h   78 (227)
T 3fzz_A            5 NEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG----RSMTVTLGAHNIKAKEET--QQIIPVAKAIPH   78 (227)
T ss_dssp             EECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCCC----EEEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             EECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccCC----CCcEEEEcccccCCCCCC--ceEEEEEEEEEC
Confidence            567889999999998642    3579999999999999999984    578999999887665442  588999999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.++++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.+.|+..+
T Consensus        79 p~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  158 (227)
T 3fzz_A           79 PDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF  158 (227)
T ss_dssp             TTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHH
T ss_pred             cCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhh
Confidence            9999988999999999999999999999999998764 457899999999998877777899999999999999999877


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ...    ...+.++|++......+.|+|||||||++++     +|+||+|||.+|+..  |++||||++|++||+++|+
T Consensus       159 ~~~----~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          159 QSS----YNRANEICVGDSKIKGASFEEDSGGPLVCKR-----AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             TTT----CCTTTEEEECCCSSCBCCTTTTTTCEEEETT-----EEEEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHT
T ss_pred             ccc----cCCCceEEEeCCCCCCcccccCCccceEEec-----CCcEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHh
Confidence            542    3578899998767778999999999999964     599999999998754  9999999999999999876

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=1.1e-49  Score=368.00  Aligned_cols=218  Identities=24%  Similarity=0.398  Sum_probs=189.3

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||+|+|+..+.++|+|+||+++||||||||+.    ..+.|++|.+++......  .+.+.|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~hp~y~   78 (237)
T 1gvz_A            5 WECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS----DDYQIWLGRHNLSKDEDT--AQFHQVSDSFLDPQFD   78 (237)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTSCCTT--CEEECEEEEEECTTSC
T ss_pred             EECCCCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCC----CCCeEEEeecccccCCCC--ceEEEeeeEecCCccC
Confidence            5678899999999997766789999999999999999995    467899999887654432  5889999999999998


Q ss_pred             CCCC-----------CCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccC-CCCCCCCCceEEEEeccCh
Q psy15052        219 FFTY-----------EYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLS-EGGSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~-~~~~~~~~L~~~~v~v~~~  286 (422)
                      ....           .||||||||++|+.|+++++|||||... ...+..++++|||.+. ..+..+..|+++.+++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~  157 (237)
T 1gvz_A           79 LSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-PKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSN  157 (237)
T ss_dssp             GGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECG
T ss_pred             cccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCC-CCCCCEEEEECCCcccCCCCCCCCccEEEEEeEeCh
Confidence            7665           8999999999999999999999999765 4568899999999874 3455678899999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|++.+..     .+.+.|||++...+..+.|+|||||||++++     +|+||+|||. +|+..+.|++||||+.|++
T Consensus       158 ~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 1gvz_A          158 EKCARAYPE-----KMTEFVLCATHRDDSGSICLGDSGGALICDG-----VFQGITSWGYSECADFNDNFVFTKVMPHKK  227 (237)
T ss_dssp             GGGCSSCGG-----GCCTTEEEEECSSTTCEECGGGTTCEEEETT-----EEEEEECCCSSSCEETTTSCCEEESGGGHH
T ss_pred             hHhhhhhhh-----cCCCceEEEeeCCCCCccCCCCccCcEeeCC-----EEEEEEEeCCCCCCCCCCCcEEEEHHHHHH
Confidence            999887643     3788999999766678899999999999853     5999999997 8988889999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++++.
T Consensus       228 WI~~~~~~  235 (237)
T 1gvz_A          228 WIKETIEK  235 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998753

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=2.1e-48  Score=386.93  Aligned_cols=234  Identities=28%  Similarity=0.536  Sum_probs=197.8

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC--CCceEEEEEeeeecccCCCCCCcEEE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL--LTSQIKIRVGEYDFSKLEEPYPYQER  206 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~V~lG~~~~~~~~~~~~~~~~  206 (422)
                      ..++.++   ..|.+++|||||+|+.  .++|+|+||+++||||||||+...  ....+.|++|.++....    ..+.+
T Consensus       159 ~~rIvgG---~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~~~~~~----~~~~~  229 (403)
T 1zjk_A          159 GGQIYGG---QKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSP----HYTQA  229 (403)
T ss_dssp             SCCCSSC---EECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCSBTTCS----CCEEE
T ss_pred             CccccCC---cCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEccccccCCC----CceEE
Confidence            3466676   6788999999999986  578999999999999999999753  25679999999863221    25789


Q ss_pred             eEEEEEECCCCCCC-CCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEe
Q psy15052        207 GVVKKMVHPKYNFF-TYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVP  282 (422)
Q Consensus       207 ~V~~i~iHp~y~~~-~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~  282 (422)
                      .|+++++||+|+.. ...||||||||++|+.|+++|+|||||....   ...+..++++|||.+..+ ..+..|+++.++
T Consensus       230 ~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~L~~~~v~  308 (403)
T 1zjk_A          230 WSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMYVDIP  308 (403)
T ss_dssp             EEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS-CCCSBCEEEEEE
T ss_pred             eEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC-ccCcccEEEEEe
Confidence            99999999999987 7889999999999999999999999997653   346889999999987654 567899999999


Q ss_pred             ccChhhHHHHHhhcC-CcccccCceEEEeecCCCCCCCcCCCCCCceeec-CCCcEEEeeEEeec-ccccCCCCCceeee
Q psy15052        283 IVSNEKCRSMFLRAG-RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWG-IGCAEANLPGVCTR  359 (422)
Q Consensus       283 v~~~~~C~~~~~~~~-~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g-~~C~~~~~p~vyt~  359 (422)
                      +++.++|+..+.... ....+.++||||+...++.++|+|||||||++.+ .+++|+|+||+||| .+|+..+.|+||||
T Consensus       309 v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~  388 (403)
T 1zjk_A          309 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTK  388 (403)
T ss_dssp             EECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEE
T ss_pred             EeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEE
Confidence            999999998875421 1114789999999766678999999999999974 56899999999999 78988788999999


Q ss_pred             cccccccccccCC
Q psy15052        360 ISKFVPWVLDTGD  372 (422)
Q Consensus       360 V~~y~~WI~~~i~  372 (422)
                      |+.|++||+++|+
T Consensus       389 V~~y~~WI~~~i~  401 (403)
T 1zjk_A          389 VINYIPWIENIIS  401 (403)
T ss_dssp             GGGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=7e-49  Score=359.99  Aligned_cols=217  Identities=28%  Similarity=0.478  Sum_probs=189.4

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||||+|+....++|+|+||+++||||||||+.+  ...+.|++|.++......  ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~   80 (226)
T 1azz_A            5 VEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNIREDEA--TQVTIQSTDFTVHENYN   80 (226)
T ss_dssp             EECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTT--CSCEEEEESCSBSSSCCT--TCEEEEECCEEECTTCB
T ss_pred             EECCCCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCC--CCceEEEEcceEcCCCCC--ccEEEEEEEEEECCCCC
Confidence            56789999999999987677899999999999999999975  467899999988765433  25788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||.... ..+..++++|||.+...+ ..+..|+++.+++++.++|+..+.   
T Consensus        81 ~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~---  156 (226)
T 1azz_A           81 SFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG---  156 (226)
T ss_dssp             TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-CTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS---
T ss_pred             CCCCCCceEEEEECCccccCCCcccccCCCCCC-CCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhC---
Confidence            888899999999999999999999999997664 678999999999887643 567889999999999999998874   


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                         .+.+.|||++. .++.+.|+|||||||++++     +|+||+|||.  +|. .+.|++||||+.|++||+++++.
T Consensus       157 ---~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~~  224 (226)
T 1azz_A          157 ---IVTDGNICIDS-TGGKGTCNGDSGGPLNYNG-----LTYGITSFGAAAGCE-AGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             ---CCCTTEEEECC-TTTCBCCTTCTTCEEEETT-----EEEEEEEEEETTCTT-SCCCEEEEESGGGHHHHHHHHCC
T ss_pred             ---cCCCceEeecC-CCCCccCCCCCCcceEECC-----EEEEEEEEECCCCCC-CCCCCEEEEHHHHHHHHHHHhCC
Confidence               27889999984 4568999999999999642     6999999997  676 57899999999999999998864

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=1.5e-48  Score=358.93  Aligned_cols=221  Identities=24%  Similarity=0.460  Sum_probs=191.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.+++|||+|+|+. ++++|+|+||+++||||||||+.+    .+.|++|.++.....+. ..+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~-~~~~~~v~~~~~hp~y~   78 (231)
T 2aiq_A            5 DECNINEHRFLALVYA-NGSLCGGTLINQEWVLTARHCDRG----NMRIYLGMHNLKVLNKD-ALRRFPKEKYFCLNTRN   78 (231)
T ss_dssp             EECCTTSCTTEEEEEE-TTEEEEEEECSSSEEEECGGGCCS----SCEEEESCSCTTSCCTT-CEEECEEEEECCSSCCS
T ss_pred             eECCCCCCCeEEEEEc-CCCeEEEEEEeCCEEEEcHHcCCC----CCEEEEecccccccCCC-ceEEEEEEEEEECCCCC
Confidence            5678899999999985 467899999999999999999974    57899999887643322 25778999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||.... ..+..++++|||.+... ...+..|+++.+++++.++|+..+..  
T Consensus        79 ~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  155 (231)
T 2aiq_A           79 DTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP-SVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG--  155 (231)
T ss_dssp             SSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTT--
T ss_pred             CCCCCCCEEEEEecCCCCCCCcEEeeECCCCCC-CCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcC--
Confidence            988899999999999999999999999997664 56899999999987644 34578999999999999999987642  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDSGGP  376 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~p  376 (422)
                          +.+.|||++...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||+.|++||+++++....
T Consensus       156 ----~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~~  226 (231)
T 2aiq_A          156 ----LAATTLCAGILEGGKDTCKGDSGGPLICNG-----QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTD  226 (231)
T ss_dssp             ----CCSSEEEEECTTCSCBCCTTCTTCEEEETT-----EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTCSS
T ss_pred             ----CCcCcEEeccCCCCCcccCCcCCCcEEECC-----EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCCCC
Confidence                678999998766778999999999999963     599999999 7898888999999999999999999976544


Q ss_pred             c
Q psy15052        377 L  377 (422)
Q Consensus       377 l  377 (422)
                      .
T Consensus       227 ~  227 (231)
T 2aiq_A          227 A  227 (231)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=3.8e-48  Score=354.58  Aligned_cols=218  Identities=28%  Similarity=0.452  Sum_probs=188.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||||+|    .+.|+|+||+++||||||||+... ....+.|++|..+.....    .+.+.|.++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l----~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~----~~~~~v~~i~~hp~y   76 (224)
T 3beu_A            5 TRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSS----AVKVRSTKVLQAPGF   76 (224)
T ss_dssp             EECCTTTSTTEEEE----TTTEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCSBTTCTT----CEEEEEEEEEECTTC
T ss_pred             eECCCCCCCEEEEE----CCceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEeecCCCC----ceEEEEEEEEeCCCc
Confidence            56789999999999    367999999999999999999764 245789999998875432    478899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      +.....||||||||++|+.+    .|+||+.... ..+..++++|||.+..++..+..|+++.+++++.++|+..+..  
T Consensus        77 ~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~-~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  149 (224)
T 3beu_A           77 TKETYGKDWALIKLAQPINQ----PTLKIATTTA-YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSF--  149 (224)
T ss_dssp             CCGGGSCCCEEEEESSCCCS----CCCEECCSST-TSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSS--
T ss_pred             CCCcCCCCEEEEEeCCCCCC----Cccccccccc-cCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCC--
Confidence            98888999999999999964    5788876543 3456899999999887777788999999999999999987642  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                        ..+.+.|||++...++.+.|+|||||||++.+.+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       150 --~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          150 --ILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             --CCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             --ccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence              13788999998766678999999999999986688999999999999998888999999999999999998863

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=393.24  Aligned_cols=236  Identities=29%  Similarity=0.521  Sum_probs=196.5

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecC--CCCceEEEccCCEEeecccCcC------CCCCceEEEEEeeeecccCCCC
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESL--GRPVNVYSNNEKVDDFSTESVN------SLLTSQIKIRVGEYDFSKLEEP  200 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTAAhCv~------~~~~~~~~V~lG~~~~~~~~~~  200 (422)
                      ..+++++   ..|.+++|||+|+|+...  .++|+|+||+++||||||||+.      ......+.|++|.++.......
T Consensus       163 ~~RIvgG---~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~  239 (424)
T 3nxp_A          163 DGRIVEG---SDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERN  239 (424)
T ss_dssp             SSCCCCC---EECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTT
T ss_pred             CCeeECC---EECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCC
Confidence            3466666   678899999999998653  4579999999999999999995      2345689999999987654332


Q ss_pred             CCcEEEeEEEEEECCCCC-CCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCC------C
Q psy15052        201 YPYQERGVVKKMVHPKYN-FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSE------G  269 (422)
Q Consensus       201 ~~~~~~~V~~i~iHp~y~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~------~  269 (422)
                       ..+.+.|+++++||+|+ .....||||||||++|+.|+++|+|||||....    ...+..++++|||.+..      +
T Consensus       240 -~~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~  318 (424)
T 3nxp_A          240 -IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG  318 (424)
T ss_dssp             -TCEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC--
T ss_pred             -ceeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccC
Confidence             25678899999999998 456789999999999999999999999997542    24688999999998643      2


Q ss_pred             CCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecC---CCCCCCcCCCCCCceeec-CCCcEEEeeEEeec
Q psy15052        270 GSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDN---GGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWG  345 (422)
Q Consensus       270 ~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~---~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g  345 (422)
                      ...+..|+++.+++++.+.|+..+..     .+.++||||+...   ...++|+|||||||++.+ .+++|+|+||+|||
T Consensus       319 ~~~~~~L~~~~v~ii~~~~C~~~~~~-----~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G  393 (424)
T 3nxp_A          319 KGQPSVLQVVNLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG  393 (424)
T ss_dssp             --CCSBCEEEEEEBCCHHHHHHTCSS-----CCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCS
T ss_pred             CCCCccceEEEeeEEcHHHhhhhccC-----cCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeC
Confidence            23378899999999999999987632     3889999998542   245899999999999985 37899999999999


Q ss_pred             ccccCCCCCceeeecccccccccccCCC
Q psy15052        346 IGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       346 ~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .+|+..+.|+|||||+.|++||+++|+.
T Consensus       394 ~~C~~~~~pgVyT~Vs~y~~WI~~~i~~  421 (424)
T 3nxp_A          394 EGCDRDGKYGFYTHVFRLKKWIQKVIDQ  421 (424)
T ss_dssp             SCTTTCCSCEEEEECTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEHHHHHHHHHHHHHH
Confidence            9999889999999999999999998863

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=6.6e-48  Score=355.23  Aligned_cols=224  Identities=24%  Similarity=0.418  Sum_probs=190.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.+++|||+|+|+....++|+|+||+++||||||||+.    ..+.|++|.++....... ......++.+++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~~~~~~~~~-~~~~~~~~~~~~h~~~~   79 (234)
T 3s69_A            5 DECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDN----TNFQMKLGVHSKKVLNED-EQTRNPKEKFICPNKKN   79 (234)
T ss_dssp             EECCTTSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCC----SSCEEEESCCCSSSCCTT-CEEECEEEEEECTTCCT
T ss_pred             ccCCCCCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCC----CCceEEecccccccccCC-cceeeceEEEECCCccC
Confidence            5678899999999998877899999999999999999985    457899998876554432 13344566666799999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.++++++|||||.... ..+..++++|||.+.... ..+..|+.+.+.+++.+.|+..+... 
T Consensus        80 ~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-  157 (234)
T 3s69_A           80 DEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPP-SVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL-  157 (234)
T ss_dssp             TCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC-
T ss_pred             CCCCcccEEEEeeCCcCCCCCcceeeecCCCCC-CCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccc-
Confidence            999999999999999999999999999997663 458999999999876543 56788999999999999999887532 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccCCCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGDSGGP  376 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~~~p  376 (422)
                         .+.+.|||++...++.+.|+|||||||++++.     |+||+|||.. |+..+.|++||||+.|++||+++++....
T Consensus       158 ---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-----l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~~~  229 (234)
T 3s69_A          158 ---LTEYRTLCAGILEGGKDTCGGDSGGPLICNGQ-----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNTT  229 (234)
T ss_dssp             ---CTTSCEEEEECTTCSCBCCTTCTTCEEEETTE-----EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCTT
T ss_pred             ---cCCcceEeccCCCCCCccCCCCCccceEEcCE-----EEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCCcc
Confidence               36788999997777889999999999999643     9999999976 98888999999999999999999976544


Q ss_pred             c
Q psy15052        377 L  377 (422)
Q Consensus       377 l  377 (422)
                      .
T Consensus       230 ~  230 (234)
T 3s69_A          230 V  230 (234)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=368.96  Aligned_cols=217  Identities=18%  Similarity=0.255  Sum_probs=177.4

Q ss_pred             CCCCCCCcCeEEEEEe-cCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKE-SLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|+|+. .+.++|+|+||+++||||||||+..  ...+.|++|.++...     ..+.+.|+++++||+|
T Consensus        57 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~~~~~-----~~~~~~v~~i~~Hp~y  129 (283)
T 3f1s_B           57 RAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYFNRTSQ-----DPLMIKITHVHVHMRY  129 (283)
T ss_dssp             ------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTS--CSSCEEEECTTC-CC-----CCEEEEEEEEEECTTC
T ss_pred             ccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCc--cCceEEEEeeeeCCC-----CcEEEEeEEEEECCCC
Confidence            5678999999999987 3457899999999999999999965  347899999876533     2588999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC----CCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~----~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +..+..||||||||++|+.|+++++|||||...    ....+..++++|||.  ..+..+..|+++.+++++.++|+..+
T Consensus       130 ~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~~C~~~~  207 (283)
T 3f1s_B          130 DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVL  207 (283)
T ss_dssp             BTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------CEEEEEEEECHHHHHHHH
T ss_pred             CCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC--CCCCCCceeeEEEEeEeCHHHHhhhh
Confidence            998999999999999999999999999999764    345688999999998  44566889999999999999999987


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..     .++++||||+...   ..|.|||||||++. .+++|+|+||+||+. |+..+.|+|||||+.|++||+++|+.
T Consensus       208 ~~-----~~~~~~~Ca~~~~---~~~~gDSGgPlv~~-~~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~~  277 (283)
T 3f1s_B          208 NV-----TVTTRTYCERSSV---AAMHWMDGSVVTRE-HRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMNA  277 (283)
T ss_dssp             TS-----CCCTTEEEEECSS---CGGGBCTTCEEEEE-CSSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHTC
T ss_pred             cC-----CCCCCeEcccCCC---CCCCCCCCCcEEEE-ECCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhhc
Confidence            53     3889999998432   24577999999998 678999999999985 77778899999999999999999975


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       278 ~  278 (283)
T 3f1s_B          278 H  278 (283)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=4e-48  Score=354.91  Aligned_cols=216  Identities=25%  Similarity=0.447  Sum_probs=185.7

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..+.+++|||+|+|+...    .++|+|+||+++||||||||+.    ..+.|++|.++.......  .+.+.|.++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~h   78 (226)
T 4ag1_A            5 TECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDT--WQKLEVIKQFRH   78 (226)
T ss_dssp             EECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCC----SEEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCC----CCeEEEeCCcccCCCCCc--ceEEEEEEEEeC
Confidence            567889999999998653    4579999999999999999984    478999999887665442  588999999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.++++++|+|||.... ...+..++++|||.+......+..|+++.+++++.+.|+...
T Consensus        79 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  158 (226)
T 4ag1_A           79 PKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR  158 (226)
T ss_dssp             TTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTTST
T ss_pred             CCCCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHccccc
Confidence            9999999999999999999999999999999997654 457899999999998777777899999999999999998322


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .      ...+.+||++...+..+.|+|||||||++..     +|+||+|||.+|+..  |++||||+.|++||+++|++
T Consensus       159 ~------~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~~  225 (226)
T 4ag1_A          159 D------FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQA  225 (226)
T ss_dssp             T------CCTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHHHH
T ss_pred             C------cCccceEeeccCCCCCcCccCCCCCceEEcC-----EEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHHhc
Confidence            1      2578899998767788999999999999953     699999999998754  99999999999999998764

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=7.3e-48  Score=355.86  Aligned_cols=226  Identities=26%  Similarity=0.458  Sum_probs=191.7

Q ss_pred             CCCCCCCcCeEEEEEec--CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKES--LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      .++.+++|||+|+|+..  ..++|+|+||+++||||||||+.    ..+.|++|.++....... ....+.++++++||+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~~~~~~~~~-~~~~~~~~~~~~h~~   79 (238)
T 4e7n_A            5 DECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR----KNFRIKLGMHSKKVPNED-EQTRVPKEKFFCLSS   79 (238)
T ss_dssp             EECCTTSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCC----SSCEEEESCSCSSSCCTT-CEEECEEEEECSSTT
T ss_pred             eeCCCCCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCC----CCCeEEeceeeccccCCC-ceeEeeeeeEEcCCC
Confidence            56788999999999876  45679999999999999999986    457899998877654432 134456677778999


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHHHHhh
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      |+.....||||||||++|+.++++++|||||.... ..+..++++|||.+... +..+..|+.+.+.+++.++|+..+..
T Consensus        80 ~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  158 (238)
T 4e7n_A           80 KNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP-SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPE  158 (238)
T ss_dssp             CCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGG
T ss_pred             CCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCC-CCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhccc
Confidence            99999999999999999999999999999997763 45899999999987654 36688999999999999999988754


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccCCCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                      ...  .+.+.|||++...++.+.|+|||||||++++.     |+||+|||.+ |+..+.|++||||+.|++||+++|+..
T Consensus       159 ~~~--~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~-----l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  231 (238)
T 4e7n_A          159 FEL--PATSRTLCAGILEGGKDTCKGDSGGPLICNGQ-----FQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGN  231 (238)
T ss_dssp             GCC--CSCCSEEEEECTTCSCBCCTTCTTCEEEETTE-----EEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTC
T ss_pred             ccC--CCCCCeEEeCCCCCCCccCCCCCCcceEECCE-----EEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcC
Confidence            321  37889999997777889999999999999643     9999999987 988889999999999999999999876


Q ss_pred             CCc
Q psy15052        375 GPL  377 (422)
Q Consensus       375 ~pl  377 (422)
                      ...
T Consensus       232 ~~~  234 (238)
T 4e7n_A          232 TDA  234 (238)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            544

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=9e-48  Score=352.39  Aligned_cols=216  Identities=21%  Similarity=0.392  Sum_probs=186.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..+.+++|||+|+|+....++|+|+||+++||||||||+.+.....+.|++|.++....... ..+.+.|++++.| +|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~-~~~~~~v~~i~~h-~y~   82 (225)
T 1a7s_A            5 RKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQ-SRQTFSISSMSEN-GYD   82 (225)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTT-TCEEEEEEEEECS-SCB
T ss_pred             EECCCCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCCCCCCceEEEEeeeECCCCCCc-ceeEEeEEEEecc-ccc
Confidence            56788999999999987777899999999999999999987666789999999887654432 1388999999999 999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|+.      
T Consensus        83 ~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~------  156 (225)
T 1a7s_A           83 PQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP------  156 (225)
T ss_dssp             TTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT------
T ss_pred             CCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhcc------
Confidence            888899999999999999999999999997664 3568899999999988777778899999999999999953      


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDSGGP  376 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~p  376 (422)
                             .|+|++...+..+.|+|||||||++++     +|+||+||| .+|+..  |++||||+.|++||+++++...|
T Consensus       157 -------~~~Ca~~~~~~~~~C~GDSGgPl~~~g-----~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~~~~~  222 (225)
T 1a7s_A          157 -------NNVCTGVLTRRGGICNGDGGTPLVCEG-----LAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNNPGP  222 (225)
T ss_dssp             -------TEEEEECSSSSCBCCTTCTTCEEEETT-----EEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHHSCSC
T ss_pred             -------CceEEeccCCCCCcccCCCcchheeCC-----EEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhcCCCC
Confidence                   699999766678999999999999973     699999999 678754  99999999999999999976544

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=5.3e-48  Score=352.21  Aligned_cols=211  Identities=22%  Similarity=0.385  Sum_probs=185.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..|.+++|||||+|+..+.++|+|+||+++||||||||+.+.....+.|++|.++......  ..+.+.|+++++| +|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~h-~y~   81 (218)
T 2z7f_E            5 RRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREP--TRQVFAVQRIFEN-GYD   81 (218)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCT--TCEEEEEEEEEES-CCB
T ss_pred             EECCCCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCCCcCcEEEEEeceecCCCCC--ceEEEEEEEEEcc-CCC
Confidence            5678899999999998877889999999999999999998766678999999988765443  2588999999999 999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.++++ .+.|+.      
T Consensus        82 ~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~------  154 (218)
T 2z7f_E           82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRR------  154 (218)
T ss_dssp             TTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEE-CTTCCT------
T ss_pred             CCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEe-hhHcCc------
Confidence            888899999999999999999999999997764 356889999999998877667889999999999 888953      


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEee--cccccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~--g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                             .++|++...++.+.|+|||||||++++     +|+||+||  |. |+..+.|++||||+.|++||+++|+
T Consensus       155 -------~~~Ca~~~~~~~~~C~GDSGgPl~~~~-----~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          155 -------SNVCTLVRGRQAGVCFGDSGSPLVCNG-----LIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             -------TSEEEECTTSCCBCCTTCTTCEEEETT-----EEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -------ceeeeccCCCCCeeCCCcCCCceEEcc-----EEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence                   289999766678999999999999863     69999999  65 9877889999999999999998764

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=7.5e-48  Score=352.58  Aligned_cols=215  Identities=26%  Similarity=0.429  Sum_probs=187.3

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .++.+++|||+|+|+...    .++|+|+||+++||||||||+.    ..+.|++|.++.......  .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~h   78 (224)
T 3rp2_A            5 VESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----REITVILGAHDVRKREST--QQKIKVEKQIIH   78 (224)
T ss_dssp             EECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCC----CCcEEEEeccccCcCCCC--cEEEEEEEEEEC
Confidence            567889999999998664    3479999999999999999984    578999999887654442  588999999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|+++.+.+++.++|+...
T Consensus        79 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  158 (224)
T 3rp2_A           79 ESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYR  158 (224)
T ss_dssp             TTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTT
T ss_pred             CCccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhcccc
Confidence            9999988899999999999999999999999997764 457899999999998776667888999999999999998622


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                       .     ...+.++|++......+.|.|||||||++++     +|+||+|||.+|+..  |++||||+.|++||+++|+
T Consensus       159 -~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          159 -Y-----YEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             -C-----CCTTTEEEECCTTSCCBCCTTTTTCEEEETT-----EEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             -c-----cCcCCEEEecCCCCCCeeccCCCCCeEEEcc-----eeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence             1     2578899998777778999999999999963     699999999998754  9999999999999998864

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=6.8e-48  Score=355.23  Aligned_cols=223  Identities=24%  Similarity=0.415  Sum_probs=190.2

Q ss_pred             CCCCCCCcCeEEEEEec--CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKES--LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..|.+++|||+|+|+..  ..++|+|+||+++||||||||+.    ..+.|++|.++........ .....+.++++||+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~-~~~~~~~~~~~h~~   79 (234)
T 3s9c_A            5 DECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR----RNIRIKLGMHSKNIRNEDE-QIRVPRGKYFCLNT   79 (234)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCC----TTEEEEESCSSSSSCCTTC-EEECEEEEECCSSC
T ss_pred             eeCCCCCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcC----CCceEEEeecccccccCCc-ceEEeeeEEEeCCC
Confidence            56788999999999876  45679999999999999999986    4688999998776544321 34455667777999


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      |+.....||||||||++|+.|+++++|||||.... ..+..++++|||.+... ..+..|+.+.+.+++.+.|+..+...
T Consensus        80 ~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~-~~~~~~~v~GwG~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~  157 (234)
T 3s9c_A           80 KFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR-GVGSRCRIMGWGKISTT-TYPDVPHCTNIFIVKHKWCEPLYPWV  157 (234)
T ss_dssp             SSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEEEESSCSBTT-BCCSSCEEEEEEEECGGGTTTTCTTS
T ss_pred             CCCCCCcCceEEEEECCccccCCcccccccCCCCC-CCCCeEEEEeeCCCCCC-CCCccccccceEecCHHHhhhcccCC
Confidence            99988899999999999999999999999997764 45899999999988755 66888999999999999999876532


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccCCCCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGDSGG  375 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~~~  375 (422)
                          .+.+.|||++...++.+.|+|||||||++++.     |+||+|||.. |+..+.|++||||+.|++||+++|+...
T Consensus       158 ----~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~-----l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~  228 (234)
T 3s9c_A          158 ----PADSRTLCAGILKGGRDTCHGDSGGPLICNGE-----MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGNR  228 (234)
T ss_dssp             ----CTTSSEEEEECTTSSCBCCTTCTTCEEEETTE-----EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCS
T ss_pred             ----CCCcceEEeecCCCCCccCCCCCCCeEEEeCC-----cEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCCC
Confidence                37889999997777899999999999999743     9999999976 9888899999999999999999997664


Q ss_pred             Cc
Q psy15052        376 PL  377 (422)
Q Consensus       376 pl  377 (422)
                      ..
T Consensus       229 ~~  230 (234)
T 3s9c_A          229 TV  230 (234)
T ss_dssp             SC
T ss_pred             ee
Confidence            43

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=8.6e-48  Score=353.08  Aligned_cols=219  Identities=20%  Similarity=0.267  Sum_probs=192.4

Q ss_pred             CCCCCCCcCeEEEEEecCC--C-CceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESLG--R-PVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~--~-~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..|.+++|||+|+|+....  + +|+|+||+++||||||||+.+.....+.|++|..+......   .+.+.|+++++| 
T Consensus         4 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~---~~~~~v~~i~~h-   79 (228)
T 3h7o_A            4 EKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWEDPG---KSDPYVSHVYLS-   79 (228)
T ss_dssp             EECCGGGSTTEEEEEECGGGCCEEEEEEESSSSEEEECHHHHTTSCGGGCEEEESCSBTTTBCC---EEECCEEEEEES-
T ss_pred             ccCCcCCCCeEEEEeecCCCCceEeeeEEeeCCEEEEcHHhcccCCCCcEEEEecccccccCCC---ceeeeEEEEEcc-
Confidence            5678899999999997654  5 89999999999999999998767788999999988765433   478899999999 


Q ss_pred             CCCCCCCCCceEEEEECCCcccCC-CeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAP-NIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~-~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +|+.....||||||||++|+.+++ .++|||||.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+
T Consensus        80 ~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  159 (228)
T 3h7o_A           80 FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKY  159 (228)
T ss_dssp             SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHH
T ss_pred             ccCCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHh
Confidence            999989999999999999999999 999999998763 467899999999998877777888999999999999999988


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ...    .+.+.|||++..  +.+.|+|||||||++++.     |+||+||+.+|+. +.|++||||+.|++||+++|+.
T Consensus       160 ~~~----~~~~~~~Ca~~~--~~~~C~GDsGgPl~~~~~-----l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          160 GPI----FLSLQVFCAQKV--GVSLESGDAGDPTVQQDT-----LVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             TTS----CCCSSEEEEECT--TCCCCGGGTTCEEEETTE-----EEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             cCc----cCCceEEecCCC--CCcCCCCCCCCcceecCe-----EEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence            542    378899999844  389999999999998643     9999999999986 8899999999999999998864

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=8.9e-48  Score=400.75  Aligned_cols=235  Identities=29%  Similarity=0.565  Sum_probs=185.6

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQ  204 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~  204 (422)
                      ..+++++   ..|.+++|||||+|+...   .++|+|+||+++||||||||+.+. ....+.|++|.++.....+.  .+
T Consensus       385 ~~rIvgG---~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~--~~  459 (625)
T 2f83_A          385 KPRIVGG---TASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKED--TS  459 (625)
T ss_dssp             CSCCCSS---SSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCSBGGGCCSS--CC
T ss_pred             CCceECC---EECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEeccCCCCCCC--ce
Confidence            3467777   778999999999998653   467999999999999999999764 34678999999887654332  35


Q ss_pred             EEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEec
Q psy15052        205 ERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPI  283 (422)
Q Consensus       205 ~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v  283 (422)
                      .+.|+++++||+|+.....||||||||++|+.|+++|+|||||.... ...+..++++|||.+...+..+..|+++.+++
T Consensus       460 ~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~~L~~~~v~i  539 (625)
T 2f83_A          460 FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL  539 (625)
T ss_dssp             CEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCSBCBCCEECC
T ss_pred             EEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCcccEEEEEEE
Confidence            68999999999999888899999999999999999999999997653 34578899999999877667788999999999


Q ss_pred             cChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccc
Q psy15052        284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKF  363 (422)
Q Consensus       284 ~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y  363 (422)
                      ++.++|++.+...    .+.+.||||+...++.++|+|||||||++. .+++|+|+||+|||.+|+..+.|+|||||+.|
T Consensus       540 ~~~~~C~~~~~~~----~i~~~~iCag~~~~~~d~C~GDSGGPLv~~-~~~~~~lvGIvS~G~~C~~~~~P~vyT~V~~y  614 (625)
T 2f83_A          540 VTNEECQKRYRGH----KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEY  614 (625)
T ss_dssp             CCHHHHHTTCTTS----CCCTTBCCC----------CCCTTCEEEEE-ETTEEEEEEEEEECCC----CCCCEEEEGGGG
T ss_pred             cCHHHHHHHhccC----CCCCCeEEeecCCCCCcCCCCCcccceEEE-ECCeEEEEEEEEeCCCCCCCCCCeEEEEHHHH
Confidence            9999999876432    378899999876667899999999999998 57899999999999999988899999999999


Q ss_pred             cccccccCCC
Q psy15052        364 VPWVLDTGDS  373 (422)
Q Consensus       364 ~~WI~~~i~~  373 (422)
                      ++||+++++.
T Consensus       615 ~~WI~~~~~~  624 (625)
T 2f83_A          615 VDWILEKTQA  624 (625)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHHhc
Confidence            9999998863

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=1.8e-47  Score=370.68  Aligned_cols=228  Identities=26%  Similarity=0.536  Sum_probs=181.4

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeE-
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGV-  208 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V-  208 (422)
                      .++.++   ..|.+++|||+|+|.   .++|+|+||+++||||||||+.+..  ...|++|.++.....    .+.+.| 
T Consensus        81 ~rIvgG---~~a~~~~~Pw~v~l~---~~~CgGsLIs~~~VLTAAHC~~~~~--~~~v~~G~~~~~~~~----~~~~~v~  148 (333)
T 1elv_A           81 QRIIGG---SDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGNR--EPTMYVGSTSVQTSR----LAKSKML  148 (333)
T ss_dssp             --CBTC---EECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTCS--SCCEECSCSBCC-----------CEE
T ss_pred             ceeecC---cccCCCCcCeEEEec---CCceeEEEecCCEEEehhheeCCCC--CCeEEEeeeecccCc----cceeeee
Confidence            356666   678899999999994   3489999999999999999997633  347899988763221    244455 


Q ss_pred             --EEEEECCCCCC-------CCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCc
Q psy15052        209 --VKKMVHPKYNF-------FTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVL  276 (422)
Q Consensus       209 --~~i~iHp~y~~-------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L  276 (422)
                        +++++||+|+.       ....||||||||++|+.|+++|+|||||....   ...+..++++|||.+... ..+..|
T Consensus       149 ~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~-~~~~~L  227 (333)
T 1elv_A          149 TPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKR-DRAVRL  227 (333)
T ss_dssp             CEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSC-SSCSBC
T ss_pred             ccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCcCCC-CcCcee
Confidence              99999999984       56789999999999999999999999997653   345889999999987653 457889


Q ss_pred             eEEEEeccChhhHHHHHhhcC----CcccccCceEEEeecCCCCCCCcCCCCCCceeecC-CC-cEEEeeEEeecccccC
Q psy15052        277 QKVTVPIVSNEKCRSMFLRAG----RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DG-RYFLAGIISWGIGCAE  350 (422)
Q Consensus       277 ~~~~v~v~~~~~C~~~~~~~~----~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~-~~-~~~lvGV~S~g~~C~~  350 (422)
                      +++.+++++.++|+..+....    ....++++||||+... +.++|+|||||||++.+. ++ +|+|+||+|||.+|+.
T Consensus       228 ~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C~~  306 (333)
T 1elv_A          228 KAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT  306 (333)
T ss_dssp             EEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTTS
T ss_pred             EEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCCCCC
Confidence            999999999999998664321    0113788999998654 789999999999999743 34 9999999999999973


Q ss_pred             CCCCceeeecccccccccccCCCC
Q psy15052        351 ANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       351 ~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                         |+|||||+.|++||+++|+..
T Consensus       307 ---~~vyt~V~~y~~WI~~~~~~~  327 (333)
T 1elv_A          307 ---YGLYTRVKNYVDWIMKTMQEN  327 (333)
T ss_dssp             ---EEEEEEGGGGHHHHHHHHHHT
T ss_pred             ---CcEEeEHHHHHHHHHHHHhcc
Confidence               899999999999999998654

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=1.2e-47  Score=381.13  Aligned_cols=232  Identities=25%  Similarity=0.482  Sum_probs=182.9

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-----CceEEEEEeeeecccCCCCCCcE
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-----TSQIKIRVGEYDFSKLEEPYPYQ  204 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~V~lG~~~~~~~~~~~~~~  204 (422)
                      .++.++   ..|.+++|||+|+|..  .+.|+|+||+++||||||||+....     ...+.|++|.++......   .+
T Consensus       156 ~rIvgG---~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~---~~  227 (399)
T 1gpz_A          156 QQIIGG---QKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK---LG  227 (399)
T ss_dssp             CCCCSC---EECCTTSSTTEEEEES--SSEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCSBHHHHHH---TC
T ss_pred             CEEECC---EECCCCCCCCEEEECC--CCCeEEEEeCCCEEEeChhcccccccccCCcceEEEEecccccccccc---cc
Confidence            467777   6789999999999864  3479999999999999999997532     345789999887643221   23


Q ss_pred             EEeEEEEEECCCCCCC---CCCCceEEEEECCCcccCCCeeeeecCCCCCC-CCCCeEEEEEecccCCCCCCCCCceEEE
Q psy15052        205 ERGVVKKMVHPKYNFF---TYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVT  280 (422)
Q Consensus       205 ~~~V~~i~iHp~y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~  280 (422)
                      .+.|+++++||+|+..   ...||||||||++|+.|+++|+|||||..... ..+..++++|||.+..  ..+..|+++.
T Consensus       228 ~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~--~~~~~L~~~~  305 (399)
T 1gpz_A          228 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KIAHDLRFVR  305 (399)
T ss_dssp             CCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-------CCSBCEEEE
T ss_pred             ccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCC--ccCccceEEE
Confidence            4689999999999753   46799999999999999999999999986543 4688899999998754  3577899999


Q ss_pred             EeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeec-CCCcEEEeeEEeecccccCCCCCceeee
Q psy15052        281 VPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTR  359 (422)
Q Consensus       281 v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~-~~~~~~lvGV~S~g~~C~~~~~p~vyt~  359 (422)
                      +++++.+.|+..+........++++||||+...++.++|+|||||||++.+ .+++|+|+||+|||.+|+.  .|+||||
T Consensus       306 ~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C~~--~~~vyt~  383 (399)
T 1gpz_A          306 LPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTK  383 (399)
T ss_dssp             EEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTTTT--TEEEEEE
T ss_pred             EEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCcCC--CCeEEEE
Confidence            999999999987643222224788999999765678999999999999874 4689999999999999984  4899999


Q ss_pred             cccccccccccCCC
Q psy15052        360 ISKFVPWVLDTGDS  373 (422)
Q Consensus       360 V~~y~~WI~~~i~~  373 (422)
                      |+.|++||+++|+.
T Consensus       384 V~~y~~WI~~~~~~  397 (399)
T 1gpz_A          384 VLNYVDWIKKEMEE  397 (399)
T ss_dssp             GGGGHHHHHHHTC-
T ss_pred             hHHhHHHHHHHhcc
Confidence            99999999999875

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=3.6e-46  Score=340.78  Aligned_cols=212  Identities=24%  Similarity=0.427  Sum_probs=184.1

Q ss_pred             CCCCCCCcCeEEEEEec---CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKES---LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..|.+++|||+|+|+..   ..++|+|+||+++||||||||+.+.....+.|++|.++......  ..+.+.|.++++| 
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~h-   81 (221)
T 1fuj_A            5 HEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEP--TQQHFSVAQVFLN-   81 (221)
T ss_dssp             EECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCT--TCEEEEEEEEEEC-
T ss_pred             EECCCCCcCCEEEEEEecCCCCEEEEEEEecCCEEEEchHhcCcCCCCceEEEEeeeeccCCCC--ceEEEEEEEEEeC-
Confidence            56788999999999864   25789999999999999999998766678999999988765433  2688999999999 


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....||||||||++|+.|+++++|||||.... ...+..++++|||.+...+..+..|++..+.++ .+.|..   
T Consensus        82 ~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~---  157 (221)
T 1fuj_A           82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCRP---  157 (221)
T ss_dssp             CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CTTCCT---
T ss_pred             CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEE-eeecCC---
Confidence            999888899999999999999999999999998764 356899999999998776677889999999999 778843   


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                                .++|++...+..+.|+|||||||++++     +|+||+||+. +|+..+.|++||||+.|++||+++|+
T Consensus       158 ----------~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          158 ----------HNICTFVPRRKAGICFGDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             ----------TEEEEECSSSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----------ceeeeccCCCCCCCCCCCCCCeeEECC-----EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence                      389998766678999999999999953     6999999954 49877889999999999999998864

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=1.7e-46  Score=345.05  Aligned_cols=215  Identities=23%  Similarity=0.394  Sum_probs=183.1

Q ss_pred             CCCCCCCcCeEEEEEec----CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKES----LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.+++|||+|+|+..    ..++|+|+||+++||||||||+.+  ...+.|++|..+....     .+.+.|+++++|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~v~~G~~~~~~~-----~~~~~v~~i~~h   77 (230)
T 2hlc_A            5 YEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSAVQYEG-----EAVVNSERIISH   77 (230)
T ss_dssp             EECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCSBTTCC-----SEEEECSEEEEC
T ss_pred             eECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCC--CcceEEEEeeeecCCC-----CeEEEEEEEEEC
Confidence            56788999999999863    345799999999999999999975  5678999998876541     378899999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+.....||||||||+ |+.|+++++|||||...+   ...+..++++|||.+....   ..|+++.+.+++.++|++
T Consensus        78 p~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~---~~l~~~~~~~~~~~~C~~  153 (230)
T 2hlc_A           78 SMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT---VILQYTYNLVIDNDRCAQ  153 (230)
T ss_dssp             TTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC---CBCEEEEEEEECHHHHHT
T ss_pred             CCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC---ceeEEEEEEEeCHHHhhh
Confidence            999998899999999999 999999999999997653   3468889999999875432   689999999999999998


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...    .+.+.|||++. ..+.+.|+|||||||++++   .++|+||+||+.  +|. .+.|++||||+.|++||++
T Consensus       154 ~~~~~----~~~~~~~Ca~~-~~~~~~C~GDSGgPl~~~~---~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~  224 (230)
T 2hlc_A          154 EYPPG----IIVESTICGDT-SDGKSPCFGDSGGPFVLSD---KNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ  224 (230)
T ss_dssp             TSCTT----SSCTTEEEECC-TTSCBCCTTCTTCEEEEGG---GTEEEEEEEECCTTCTT-SCCCEEEEEGGGGHHHHHH
T ss_pred             hhCCC----cccCCeEEecC-CCCCCcCCCCCCCeeEECc---CCEEEEEEEEeCCCCCC-CCCCCEEEEhHHhHHHHHH
Confidence            76431    37889999985 4567999999999999874   348999999986  674 6789999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      +++.
T Consensus       225 ~~~~  228 (230)
T 2hlc_A          225 NTGI  228 (230)
T ss_dssp             HHCC
T ss_pred             hhCc
Confidence            8864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=388.49  Aligned_cols=233  Identities=23%  Similarity=0.402  Sum_probs=158.3

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEE
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVV  209 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~  209 (422)
                      .+++++   ..|.+++|||||+|+....++|+||||+++||||||||+.......+.|++|.++....... ..+.+.|+
T Consensus       320 ~rIvgG---~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~-~~~~~~V~  395 (565)
T 2xrc_A          320 KRIVGG---KRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLK-RIVIEYVD  395 (565)
T ss_dssp             ---------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTCSSCCEEEEC--------------CEEEEE
T ss_pred             CceECC---EECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccCCCcceEEEEEEeeccCCCCC-ccEEEEEE
Confidence            466666   77889999999999987778999999999999999999987667789999999886544311 25778999


Q ss_pred             EEEECCCCCCCCCCCceEEEEECCCcccCC----CeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEecc
Q psy15052        210 KKMVHPKYNFFTYEYDLALVRLETPVEFAP----NIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIV  284 (422)
Q Consensus       210 ~i~iHp~y~~~~~~nDIALLkL~~pv~~s~----~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~  284 (422)
                      ++++||+|+...+.||||||||++|+.+++    +++|||||.... ...+..++++|||.+..+ ..+..|+++.++++
T Consensus       396 ~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~-~~~~~L~~~~v~i~  474 (565)
T 2xrc_A          396 RIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDN-ERVFSLQWGEVKLI  474 (565)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC--------------CEEEEEEC
T ss_pred             EEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCCC-CccceeeEEeeeeh
Confidence            999999999999999999999999998764    789999997654 346889999999987653 35778999999999


Q ss_pred             ChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccc
Q psy15052        285 SNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV  364 (422)
Q Consensus       285 ~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~  364 (422)
                      +.  |+..+...    .....||||+...+..++|+|||||||++.+.+++|+|+||+|||.+|+..+.|+|||||++|+
T Consensus       475 ~~--C~~~~~~~----~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~  548 (565)
T 2xrc_A          475 SN--CSKFYGNR----FYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYF  548 (565)
T ss_dssp             SC--THHHHTTS----CCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEECC------CCCCEEEEEGGGGH
T ss_pred             HH--hHHhhccC----cCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEeeCCCCCCCCCCEEEEEHHHHH
Confidence            84  99877532    2345599999777778999999999999987788999999999999999888999999999999


Q ss_pred             ccccccCCC
Q psy15052        365 PWVLDTGDS  373 (422)
Q Consensus       365 ~WI~~~i~~  373 (422)
                      +||+++++.
T Consensus       549 ~WI~~~i~~  557 (565)
T 2xrc_A          549 DWISYHVGR  557 (565)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHhcc
Confidence            999999863

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=361.83  Aligned_cols=215  Identities=18%  Similarity=0.259  Sum_probs=186.4

Q ss_pred             CCCCCCCcCeEEEEEe-cCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKE-SLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+..++|||+|+|+. .+.++|+|+||+++||||||||+..  ...+.|++|.++...     ..+.+.|+++++||+|
T Consensus        98 ~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~~~~~-----~~~~~~v~~i~~Hp~y  170 (317)
T 3h5c_B           98 RAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYFNRTSQ-----DPLMIKITHVHVHMRY  170 (317)
T ss_dssp             SSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHS--CSSCEEEECTTSCTT-----SCEEEEEEEEEECTTC
T ss_pred             ccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCc--CCceEEEEeeecCCC-----CcEEEEeeEEEECCCC
Confidence            5688999999999996 4456899999999999999999965  457899999876543     2588999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC----CCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~----~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +.....||||||||++|+.|+++++|||||...    ....+..++++|||.  ..+..+..|+++.+++++.++|++.+
T Consensus       171 ~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~~C~~~~  248 (317)
T 3h5c_B          171 DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVL  248 (317)
T ss_dssp             BTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEEECHHHHHHHH
T ss_pred             CCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEEECHHHHhhhh
Confidence            998899999999999999999999999999764    345688999999998  44566888999999999999999987


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ..     .+.+.||||+..   ...|.|||||||++. .+++|+|+||+||+. |+..+.|++||||+.|++||+++|+
T Consensus       249 ~~-----~~~~~~~Ca~~~---~~~~~gDsGgPl~~~-~~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          249 NV-----TVTTRTYCERSS---VAAMHWMDGSVVTRE-HRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             TC-----CCCTTEEEEECS---CCCCCCCTTCEEEEE-ETTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             cC-----cCCCceeECCCC---CCCcCCCCCCCEEEe-cCCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            53     378999999843   236788999999998 678999999999985 6667889999999999999998764

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=1.5e-44  Score=381.75  Aligned_cols=229  Identities=27%  Similarity=0.482  Sum_probs=194.5

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEec-CCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKES-LGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQER  206 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~  206 (422)
                      ..+++++   ..|.+++|||||+|+.. +.++|+|+||+++||||||||+... ....+.|++|.++......  ..+.+
T Consensus       559 ~~RIvGG---~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~--~~q~~  633 (791)
T 4dur_A          559 PGRVVGG---CVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEP--HVQEI  633 (791)
T ss_dssp             CTTCTTC---EECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSSCCT--TCEEE
T ss_pred             CCceECC---EECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccCCCC--ccEEE
Confidence            3577777   67899999999999865 4568999999999999999999763 3467899999987655443  26889


Q ss_pred             eEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccC
Q psy15052        207 GVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVS  285 (422)
Q Consensus       207 ~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~  285 (422)
                      .|.++++||.      .||||||||++|+.|+++|+|||||.... ...+..++++|||.+.. ...+..|+++.+.+++
T Consensus       634 ~V~~i~~hp~------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~-~~~s~~L~~~~v~ii~  706 (791)
T 4dur_A          634 EVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIE  706 (791)
T ss_dssp             EEEEEEECTT------CCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC----CCTTBCEEEEEEEEC
T ss_pred             EEEEEECCCC------CCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCC-CCCCCeeEEEEEEEeC
Confidence            9999999997      47999999999999999999999997653 45688999999998763 3457889999999999


Q ss_pred             hhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccc
Q psy15052        286 NEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       286 ~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~  365 (422)
                      .+.|+......   ..+.+.||||+...++.++|+|||||||++. .+++|+|+||+|||.+|+..+.|+|||||+.|++
T Consensus       707 ~~~C~~~~~~~---~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~-~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~d  782 (791)
T 4dur_A          707 NKVCNRYEFLN---GRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVT  782 (791)
T ss_dssp             HHHHTSTTTTT---TCCCTTEEEESCSSSCCCBCCSCTTCEEEEE-ETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHH
T ss_pred             HHHhhcccccC---CCCCCCeEEeccCCCCCCCCCCCcccceEEE-eCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHH
Confidence            99998653211   1378999999977778899999999999998 5689999999999999998899999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++|+.
T Consensus       783 WI~~~i~~  790 (791)
T 4dur_A          783 WIEGVMRN  790 (791)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=4.7e-43  Score=357.93  Aligned_cols=225  Identities=24%  Similarity=0.423  Sum_probs=178.8

Q ss_pred             CCCCCCCcCeEEEEEec----CCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKES----LGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      .++.+++|||+|+|+..    ..++|+|+||+++||||||||+... ....+.|++|.+          .+.+.|+++++
T Consensus       219 ~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~----------~~~~~v~~i~~  288 (497)
T 1rrk_A          219 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE----------KRDLEIEVVLF  288 (497)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTC----------SSCEEEEEEEE
T ss_pred             CCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCc----------cceeeeEEEEe
Confidence            45678899999999853    2457999999999999999999753 346789999964          24678999999


Q ss_pred             CCCCCCC---------CCCCceEEEEECCCcccCCCeeeeecCCCC------CCCCCCeEEEEEecccCCCC-------C
Q psy15052        214 HPKYNFF---------TYEYDLALVRLETPVEFAPNIVPICLPGSD------DLLIGENATVTGWGRLSEGG-------S  271 (422)
Q Consensus       214 Hp~y~~~---------~~~nDIALLkL~~pv~~s~~v~PicLp~~~------~~~~~~~~~v~GwG~~~~~~-------~  271 (422)
                      ||+|+..         ...||||||||++|+.|+++|+|||||...      ....+..|++.|||......       .
T Consensus       289 Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~  368 (497)
T 1rrk_A          289 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE  368 (497)
T ss_dssp             CTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEE
T ss_pred             CCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeecc
Confidence            9999864         568999999999999999999999999753      23457788889998654321       2


Q ss_pred             CCCCceEEEEeccC---hhhHHHHHhhcCC-------cccccCceEEEeecCC--CCCCCcCCCCCCceeecCCCcEEEe
Q psy15052        272 LPPVLQKVTVPIVS---NEKCRSMFLRAGR-------YEFISDIFMCAGFDNG--GRDSCQGDSGGPLQVKGKDGRYFLA  339 (422)
Q Consensus       272 ~~~~L~~~~v~v~~---~~~C~~~~~~~~~-------~~~i~~~~lCa~~~~~--~~~~C~GDSGgPLv~~~~~~~~~lv  339 (422)
                      .+..|+++.+.+++   .+.|++.+.....       ...+.+.||||+...+  +.+.|+|||||||++. .+++|+|+
T Consensus       369 ~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~-~~~~~~l~  447 (497)
T 1rrk_A          369 EEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQV  447 (497)
T ss_dssp             SSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEE-ETTEEEEE
T ss_pred             CCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEE-eCCEEEEE
Confidence            35789999999998   7899875321100       1237889999986543  4789999999999998 57899999


Q ss_pred             eEEeecc--ccc----CCCCCc----eeeecccccccccccCCCC
Q psy15052        340 GIISWGI--GCA----EANLPG----VCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       340 GV~S~g~--~C~----~~~~p~----vyt~V~~y~~WI~~~i~~~  374 (422)
                      ||+|||.  +|+    ..+.|+    +||||++|++||+++++..
T Consensus       448 GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~  492 (497)
T 1rrk_A          448 GVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  492 (497)
T ss_dssp             EEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             EEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhCcc
Confidence            9999997  698    456785    9999999999999999753

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=7.8e-43  Score=357.30  Aligned_cols=228  Identities=20%  Similarity=0.360  Sum_probs=172.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|+|+....++|+|+||+++||||||||+... ....+.|++|.++..      ..+.+.|+++++||+|
T Consensus       228 ~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~------~~~~~~v~~i~~Hp~y  301 (509)
T 2odp_A          228 NASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQ------WGKEFLIEKAVISPGF  301 (509)
T ss_dssp             TSCHHHHCTTEEEEEC----CEEEEECSSSEEEECGGGC--------CEEEECCTTCT------TCEEECEEEEEECTTC
T ss_pred             CccccCCCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcCCCCCcceEEEEeCCcccC------CCceeeeEEEEECCCC
Confidence            567889999999999777789999999999999999999752 345689999987632      1478899999999999


Q ss_pred             CCC---------CCCCceEEEEECCCcccCCCeeeeecCCCCC------CCCCCeEEEEEecccCCCCCCC----CCceE
Q psy15052        218 NFF---------TYEYDLALVRLETPVEFAPNIVPICLPGSDD------LLIGENATVTGWGRLSEGGSLP----PVLQK  278 (422)
Q Consensus       218 ~~~---------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~------~~~~~~~~v~GwG~~~~~~~~~----~~L~~  278 (422)
                      +..         ...||||||||++|+.|+++|+|||||....      ...+..|.+.|||.+.......    ...+.
T Consensus       302 ~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~  381 (509)
T 2odp_A          302 DVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSK  381 (509)
T ss_dssp             CTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCE
T ss_pred             ccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccccccceeeeecccCce
Confidence            874         5689999999999999999999999996531      2457788889999764321110    11234


Q ss_pred             EEEec---cChhhHHHHHhhc----C----CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-
Q psy15052        279 VTVPI---VSNEKCRSMFLRA----G----RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-  346 (422)
Q Consensus       279 ~~v~v---~~~~~C~~~~~~~----~----~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-  346 (422)
                      +.+.+   ++.+.|+..+...    .    ....+.+.||||+. .++.+.|+|||||||++. .+++|+|+||+|||. 
T Consensus       382 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GDSGGPL~~~-~~~~~~l~GIvS~G~~  459 (509)
T 2odp_A          382 LNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLE-RRFRFFQVGLVSWGLY  459 (509)
T ss_dssp             EEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGGTTCEEEEE-ETTEEEEEEEEEEESC
T ss_pred             eeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCCCccCceEEE-ECCeEEEEEEEEEcCC
Confidence            45555   4689999864221    0    01247889999985 567899999999999998 468999999999997 


Q ss_pred             -ccc---------CCCCC------ceeeecccccccccccCCCC
Q psy15052        347 -GCA---------EANLP------GVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       347 -~C~---------~~~~p------~vyt~V~~y~~WI~~~i~~~  374 (422)
                       +|+         ....|      ++||||++|++||+++++..
T Consensus       460 ~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~~  503 (509)
T 2odp_A          460 NPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDV  503 (509)
T ss_dssp             CTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTTT
T ss_pred             CCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCCc
Confidence             696         24455      49999999999999998743

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=1.2e-40  Score=356.04  Aligned_cols=225  Identities=23%  Similarity=0.409  Sum_probs=178.2

Q ss_pred             CCCCCCCcCeEEEEEec----CCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKES----LGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      .++.+++|||+|.|...    ..++|+|+||+++||||||||+... ....+.|++|..+          +.+.|+++++
T Consensus       461 ~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~----------~~~~v~~i~~  530 (741)
T 3hrz_D          461 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEK----------RDLEIEVVLF  530 (741)
T ss_dssp             --CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-----CCEEEEETTCS----------CCEEEEEEEE
T ss_pred             CcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCCc----------eEEEEEEEEE
Confidence            56789999999888763    3468999999999999999999752 3567899999542          4678999999


Q ss_pred             CCCCCCCC---------CCCceEEEEECCCcccCCCeeeeecCCCC------CCCCCCeEEEEEecccCCCC-------C
Q psy15052        214 HPKYNFFT---------YEYDLALVRLETPVEFAPNIVPICLPGSD------DLLIGENATVTGWGRLSEGG-------S  271 (422)
Q Consensus       214 Hp~y~~~~---------~~nDIALLkL~~pv~~s~~v~PicLp~~~------~~~~~~~~~v~GwG~~~~~~-------~  271 (422)
                      ||+|+...         +.||||||||++|+.|+++|+|||||...      ....+..+.++|||.+....       .
T Consensus       531 Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~  610 (741)
T 3hrz_D          531 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE  610 (741)
T ss_dssp             CTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEE
T ss_pred             CCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceeccc
Confidence            99998653         68999999999999999999999999543      13467889999999875432       2


Q ss_pred             CCCCceEEEEeccC---hhhHHHHHhhcCC-------cccccCceEEEeecCC--CCCCCcCCCCCCceeecCCCcEEEe
Q psy15052        272 LPPVLQKVTVPIVS---NEKCRSMFLRAGR-------YEFISDIFMCAGFDNG--GRDSCQGDSGGPLQVKGKDGRYFLA  339 (422)
Q Consensus       272 ~~~~L~~~~v~v~~---~~~C~~~~~~~~~-------~~~i~~~~lCa~~~~~--~~~~C~GDSGgPLv~~~~~~~~~lv  339 (422)
                      ....|+...+.+++   .+.|...+.....       ...+.+.||||+...+  +.++|+|||||||+++ .+++|+|+
T Consensus       611 ~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~-~~~~~~lv  689 (741)
T 3hrz_D          611 EEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQV  689 (741)
T ss_dssp             SSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEE-ETTEEEEE
T ss_pred             cccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEe-eCCeEEEE
Confidence            36779999999998   8899985432211       1348899999986543  5789999999999998 57899999


Q ss_pred             eEEeecc--cccC---CCCC-----ceeeecccccccccccCCCC
Q psy15052        340 GIISWGI--GCAE---ANLP-----GVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       340 GV~S~g~--~C~~---~~~p-----~vyt~V~~y~~WI~~~i~~~  374 (422)
                      ||+|||.  +|+.   .+.|     ++||||+.|++||+++|+..
T Consensus       690 GIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~  734 (741)
T 3hrz_D          690 GVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  734 (741)
T ss_dssp             EEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred             EEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence            9999997  8987   5788     99999999999999999875

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=1.3e-39  Score=296.12  Aligned_cols=194  Identities=15%  Similarity=0.142  Sum_probs=158.0

Q ss_pred             CCCcCe--EEEEEecCCCCceEEEccCCEEeecccCcCCCCCceE----EEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        143 TTQRPY--VKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQI----KIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       143 ~~~~Pw--~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~----~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..++||  ++.+. .+.++|+|+||+++||||||||+.+.....+    .|++|.++.....     +.+.|+++++||+
T Consensus        14 g~~~P~~~~~~~~-~~~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~-----~~~~v~~i~~hp~   87 (215)
T 1p3c_A           14 TRVAPYNSIAYIT-FGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVN-----GSANMTEFYVPSG   87 (215)
T ss_dssp             TTSTTGGGEEEEE-CSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCTT-----CCEEEEEEECCHH
T ss_pred             CCcCCCeEEEEEE-cCCceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCCCC-----CeEEEEEEEeCCc
Confidence            457899  55665 4567899999999999999999976544555    9999998765432     3678999999999


Q ss_pred             CC-CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhh
Q psy15052        217 YN-FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       217 y~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      |+ .....||||||||++|  |+++++|+|||... ...+..++++|||.+.. +..+..|++..+.+++.+.|...+  
T Consensus        88 y~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~-~~~g~~~~~~Gwg~~~~-~~~~~~l~~~~~~~~~~~~c~~~~--  161 (215)
T 1p3c_A           88 YINTGASQYDFAVIKTDTN--IGNTVGYRSIRQVT-NLTGTTIKISGYPGDKM-RSTGKVSQWEMSGSVTREDTNLAY--  161 (215)
T ss_dssp             HHHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCS-CCTTCEEEEEECCHHHH-HHHSSCCCEEEEEECCEECSSEEE--
T ss_pred             cccCCCcccCEEEEEECCC--CcccceeeecCCCc-ccCCCeEEEecCCCCCc-ccccceechhccCccCcccchhee--
Confidence            94 5567899999999996  67889999999765 36789999999997643 234567899999999988885422  


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                                        ...+.|+|||||||++.+  +  +|+||+|||.+|+  ..|++||||++|++||++++.
T Consensus       162 ------------------~~~~~C~GDSGgPl~~~~--g--~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          162 ------------------YTIDTFSGNSGSAMLDQN--Q--QIVGVHNAGYSNG--TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             ------------------ECCCCCTTCTTCEEECTT--S--CEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHHT
T ss_pred             ------------------eccccCCCCCCCeeEccC--C--eEEEEEecccCCC--ccCceeEechHHHHHHHHHhc
Confidence                              146899999999999852  2  6999999999887  679999999999999998764

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=100.00  E-value=6.9e-33  Score=237.63  Aligned_cols=145  Identities=32%  Similarity=0.705  Sum_probs=127.1

Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC---CCCCCceEEEEeccChhhHHHHHh
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG---SLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~---~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +..++.||||||||++|+.|+++|+|||||.... ..+..++++|||.+..++   ..+..|+++.+++++.++|++.+.
T Consensus         2 d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~   80 (152)
T 2pka_B            2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHP   80 (152)
T ss_dssp             CCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred             CCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhc
Confidence            4556789999999999999999999999997654 468899999999987665   567899999999999999998764


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .     .+.+.||||+...++.+.|+|||||||++++     +|+||+||| .+|+..+.|++||||++|++||+++++.
T Consensus        81 ~-----~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  150 (152)
T 2pka_B           81 D-----KVTESMLCAGYLPGGKDTCMGDSGGPLICNG-----MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE  150 (152)
T ss_dssp             S-----BCCTTEEEEECTTSSCBCCTTCTTCEEEETT-----EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             C-----CCCCCEEeeccCCCCCcccCCccccceEECC-----EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhcc
Confidence            3     3788999999666678999999999999963     499999999 7898888999999999999999998753

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.98  E-value=3.7e-32  Score=227.17  Aligned_cols=124  Identities=23%  Similarity=0.341  Sum_probs=107.6

Q ss_pred             CCCCCCCcCeEEEEEe-cCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKE-SLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||||+|+. .+.++|+|+||+++||||||||+..   ..+.|++|.++.....+  ..+.+.|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y   79 (131)
T 1yph_C            5 EEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSSE--KIQKLKIAKVFKNSKY   79 (131)
T ss_dssp             EECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCCC---TTSEEEESCSBTTCSSS--CCEEEEEEEEEECTTC
T ss_pred             EECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCCC---CCeEEEEeEccCCCCCC--ceEEEEEEEEEeCCCC
Confidence            5678999999999987 3456799999999999999999975   56789999988765433  2588999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccC
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLS  267 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~  267 (422)
                      +.....||||||||++|+.|+++++|||||.... ...+..|+++|||.+.
T Consensus        80 ~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           80 NSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             CTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSC
T ss_pred             CCCCCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCccC
Confidence            9988899999999999999999999999998664 4478999999999763

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.97  E-value=1.7e-32  Score=249.21  Aligned_cols=180  Identities=12%  Similarity=0.033  Sum_probs=132.3

Q ss_pred             CCCCcCeEEEEEecC---CCCceEEEcc---CCEEeecccCcCCCC----CceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        142 NTTQRPYVKPLKESL---GRPVNVYSNN---EKVDDFSTESVNSLL----TSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       142 ~~~~~Pw~v~i~~~~---~~~C~GtLIs---~~~VLTAAhCv~~~~----~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      ++++||||++|++..   .++|+|+||+   ++||||||||+....    ...+.|++|.++...     +.+.+.|+++
T Consensus         2 ~~~~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~-----~~~~~~v~~~   76 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGES-----EHGVWAAEEL   76 (218)
T ss_dssp             -CTTCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCC-----TTCCEEEEEE
T ss_pred             CCCCCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCC-----CccEEEEEEE
Confidence            468999999998642   3579999999   999999999996532    246788888765432     1346789999


Q ss_pred             EECCCCCC-CCCCCceEEEEECCC--cccCCCee-eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChh
Q psy15052        212 MVHPKYNF-FTYEYDLALVRLETP--VEFAPNIV-PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNE  287 (422)
Q Consensus       212 ~iHp~y~~-~~~~nDIALLkL~~p--v~~s~~v~-PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~  287 (422)
                      ++||+|+. ....||||||||++|  +.+++.+. +++|+...  ..+..++++|||.+....  ...|          .
T Consensus        77 ~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~--~~g~~~~v~GwG~~~~~~--~~~l----------~  142 (218)
T 3cp7_A           77 VTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ--PRGQYYSAYGYPAAAPFN--GQEL----------H  142 (218)
T ss_dssp             EECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC--CSSCEEEEEECCCSTTCC--SSSC----------E
T ss_pred             EECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC--CCCCEEEEEeCCCCCCCC--Ccee----------e
Confidence            99999974 456899999999999  78888899 99998643  468899999999864211  1122          3


Q ss_pred             hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccC
Q psy15052        288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE  350 (422)
Q Consensus       288 ~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~  350 (422)
                      .|....... ........|+|+.        |.|||||||+++ .+++++|+||+|||.+|+.
T Consensus       143 ~C~~~~~~~-~~~~~~~~~~Ca~--------~~GDSGGPlv~~-~~g~~~lvGIvS~G~gc~~  195 (218)
T 3cp7_A          143 SCHGTATND-PMGSSTQGIPCNM--------TGGSSGGPWFLG-NGTGGAQNSTNSYGYTFLP  195 (218)
T ss_dssp             EEEEECEEC-TTSSSCEEEECCC--------CTTCTTCEEEES-SSSSSCEEEECCEEETTEE
T ss_pred             EeeeeEEcC-CCCCceEEecCCC--------CCCCcCCeeEEc-cCCCeEEEEEEccccCCCC
Confidence            454321100 0001334789983        469999999997 5677899999999999974

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.96  E-value=1.4e-29  Score=237.22  Aligned_cols=191  Identities=13%  Similarity=0.062  Sum_probs=138.3

Q ss_pred             CCCCCcCeEE--EEEec---CCCCceEEEccCCEEeecccCcCCCC--CceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        141 KNTTQRPYVK--PLKES---LGRPVNVYSNNEKVDDFSTESVNSLL--TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       141 a~~~~~Pw~v--~i~~~---~~~~C~GtLIs~~~VLTAAhCv~~~~--~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      +..++|||++  +|...   ..++|+|+||+++||||||||+....  ...+.|++|.++......    ..+.+.+++.
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~----g~~~~~~i~~   87 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPN----GGFTAEQITK   87 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTT----CCEEEEEEEE
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCCccCCcceEEEEecccCcccccC----CcEEEEEEec
Confidence            4567888865  45432   24679999999999999999997532  246999999877543222    2367888888


Q ss_pred             CCCCCCCCCCCceEEEEECCCc---ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPV---EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~  290 (422)
                      |+.      .+|||||||++++   .|+..+.|+||+.......+..++++|||....     ..++.....++..    
T Consensus        88 ~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~----  152 (268)
T 1wcz_A           88 YSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-----VATMWESKGKITY----  152 (268)
T ss_dssp             CSS------SSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE----
T ss_pred             CCC------CCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCC-----CceEEeecceEEe----
Confidence            863      5899999999997   466789999998655456799999999996421     2234333333321    


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                                 +...++|.     ..+.|+|||||||+..  +  +.|+||+|||..|+.  .+++|+ +..|++||+++
T Consensus       153 -----------~~~~~i~~-----~~~~c~GdSGGPLv~~--~--g~lvGIvS~G~~~~~--~~~~~~-~~~~~~wI~~~  209 (268)
T 1wcz_A          153 -----------LKGEAMQY-----DLSTTGGNSGSPVFNE--K--NEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQN  209 (268)
T ss_dssp             -----------EETTEEEE-----SBCCCTTCTTCEEECT--T--SCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHH
T ss_pred             -----------eCCCeEEE-----ecccCCCCccCeEEcc--C--CEEEEEEeCCccCCc--ceeEEc-CHHHHHHHHHH
Confidence                       23457776     3579999999999963  1  249999999988863  245555 68899999988


Q ss_pred             CCC
Q psy15052        371 GDS  373 (422)
Q Consensus       371 i~~  373 (422)
                      +..
T Consensus       210 i~~  212 (268)
T 1wcz_A          210 IED  212 (268)
T ss_dssp             CTT
T ss_pred             HHh
Confidence            864

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.96  E-value=5.5e-29  Score=233.93  Aligned_cols=191  Identities=13%  Similarity=0.063  Sum_probs=137.0

Q ss_pred             CCCCCcCeEE--EEEe---cCCCCceEEEccCCEEeecccCcCCCC--CceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        141 KNTTQRPYVK--PLKE---SLGRPVNVYSNNEKVDDFSTESVNSLL--TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       141 a~~~~~Pw~v--~i~~---~~~~~C~GtLIs~~~VLTAAhCv~~~~--~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      +..++|||++  +|..   ...++|+|+||+++||||||||+....  ...+.|++|.++......    ..+.+.+++.
T Consensus        12 ~~~~~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~----g~~~~~~i~~   87 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPN----GGFTAEQITK   87 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTT----CCEEEEEEEE
T ss_pred             cCCCCCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCcccCCCcceEEEEecccCcccccC----ccEEEEEEEe
Confidence            4567788864  4543   124679999999999999999996532  245899999876543222    2467888888


Q ss_pred             CCCCCCCCCCCceEEEEECCCc---ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPV---EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~  290 (422)
                      |+.      .+|||||||++++   .|+..+.|+||+.......+..++++|||....     ..++......+..    
T Consensus        88 ~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~----  152 (274)
T 2o8l_A           88 YSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKP-----VATMWESKGKITY----  152 (274)
T ss_dssp             CSS------SSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE----
T ss_pred             CCC------CCcEEEEEecCcccccccccccccccccccccccCCCEEEEEECCCCCC-----CceEEecCceEEe----
Confidence            873      5899999999997   478899999998655556799999999996431     1122222222211    


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                                 +...++|.     ..+.|+|||||||+..  +  +.|+||+|||..|+..  +++|. +..|++||+++
T Consensus       153 -----------~~~~~i~~-----~~~~c~GdSGGPLv~~--~--g~lvGIvS~G~~~~~~--~~~~~-~~~~~~wI~~~  209 (274)
T 2o8l_A          153 -----------LKGEAMQY-----DLSTTGGNSGSPVFNE--K--NEVIGIHWGGVPNEFN--GAVFI-NENVRNFLKQN  209 (274)
T ss_dssp             -----------EETTEEEE-----SCCCCTTCTTCEEECT--T--SCEEEEEEEEETTTEE--EEEEC-CHHHHHHHHHH
T ss_pred             -----------cCCCeEEe-----CcccCCCCchhheecc--C--CeEEEEEeCcccCCCC--ceEEe-cHHHHHHHHHH
Confidence                       23446665     4579999999999963  2  2499999999888632  45554 78999999988


Q ss_pred             CCC
Q psy15052        371 GDS  373 (422)
Q Consensus       371 i~~  373 (422)
                      +..
T Consensus       210 i~~  212 (274)
T 2o8l_A          210 IED  212 (274)
T ss_dssp             CTT
T ss_pred             Hhh
Confidence            764

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.95  E-value=5.3e-29  Score=223.38  Aligned_cols=186  Identities=17%  Similarity=0.140  Sum_probs=125.5

Q ss_pred             CCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCC
Q psy15052        141 KNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF  220 (422)
Q Consensus       141 a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~  220 (422)
                      +.+++|||+|++.   .++|+|+||+++||||||||+.+.......|+++.......     .+.+.+++++.+.   . 
T Consensus         8 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~-----~~~~~~~~i~~~~---~-   75 (200)
T 2w7s_A            8 TDATKEPYNSVVA---FVGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKG-----GGNYDVKDIVEYP---G-   75 (200)
T ss_dssp             SCTTSTTGGGEEE---ETTEEEEEEETTEEEECHHHHHHHHHTTCCEEETCCSSSCC-----CCEECEEEEEECS---S-
T ss_pred             eccccCCcccccc---cceEEEEEEECCEEEEChhhcCCcccCCcEEEEEecCccCC-----CcEEEEEEEecCC---C-
Confidence            6788999999886   36899999999999999999964221113445543322111     2456676666543   2 


Q ss_pred             CCCCceEEEEECCC----cccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        221 TYEYDLALVRLETP----VEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       221 ~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                        .+|||||||+++    +.|++.++|+||+.  ....++.++++||+......   . .+.+...+++.          
T Consensus        76 --~~DiAll~l~~~~~~~~~~~~~v~pi~l~~--~~~~g~~v~v~G~p~g~~~~---~-~~~~~~g~v~~----------  137 (200)
T 2w7s_A           76 --KEDLAIVHVHETSTEGLNFNKNVSYTKFAD--GAKVKDRISVIGYPKGAQTK---Y-KMFESTGTINH----------  137 (200)
T ss_dssp             --SSSCEEEEECSBCTTSCBGGGSCCCCCBCC--CCCTTCEEEEEECTTHHHHT---S-CEEEEEEEEEE----------
T ss_pred             --cceEEEEEECCCCCCcccccccccceeccc--cCCCCCEEEEEECCCCCCCc---c-ceEEeEEEEEc----------
Confidence              589999999985    88888999999973  34578999999986321111   0 13333444332          


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccC-CCCCce-eeecccccccccccCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE-ANLPGV-CTRISKFVPWVLDTGD  372 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~-~~~p~v-yt~V~~y~~WI~~~i~  372 (422)
                           ....++|..     .+.|+|||||||+..  ++  .|+||+|||..|+. ...+++ |+  +.|++||+++++
T Consensus       138 -----~~~~~~~~~-----~~~~~GdSGGPl~~~--~g--~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          138 -----ISGTFMEFD-----AYAQPGNSGSPVLNS--KH--ELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             -----EETTEEEEC-----SCCCTTCTTCEEECT--TS--CEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             -----cCCCEEEEc-----ceeCCCCccCeEECc--CC--EEEEEEeccccCCCCccceeeecH--HHHHHHHHhhcc
Confidence                 123456763     578999999999963  22  49999999988742 222366 56  899999999885

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.95  E-value=1.9e-28  Score=226.45  Aligned_cols=195  Identities=16%  Similarity=0.130  Sum_probs=137.5

Q ss_pred             CCCCCCCcCeEEEE--EecCCCCceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPL--KESLGRPVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i--~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .++..++|||++.+  .....++|+|+||+++||||||||+.+...  ..+.+..|..+........+.+.+.++.+..|
T Consensus        34 ~~a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~  113 (242)
T 1agj_A           34 DEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQE  113 (242)
T ss_dssp             CTTGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESC
T ss_pred             ccccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeC
Confidence            44778899998544  444567899999999999999999976333  24455557765432211111245778888899


Q ss_pred             CCCCCCCCCCceEEEEECCCcc---cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVE---FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~---~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      | |+   ..+|||||||++|+.   |++.+.|+||+.......++.++++|||.....    ..++...+.+.+..    
T Consensus       114 ~-~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~----~~l~~~~~~~~~~~----  181 (242)
T 1agj_A          114 P-FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV----NQMHRSEIELTTLS----  181 (242)
T ss_dssp             T-TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST----TCCEEEEEEECCGG----
T ss_pred             C-CC---CCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCC----ccceeeeeeEecCC----
Confidence            9 75   468999999999964   567899999986555567999999999975432    24666666665421    


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccccc-CCCCCceeeecccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCTRISKFVPWV  367 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~-~~~~p~vyt~V~~y~~WI  367 (422)
                                   ..++.     ..+.|+|||||||+..  +  +.|+||+|||.+|. .....++.+.|...+.|+
T Consensus       182 -------------~~~~~-----~~~~c~GdSGGPl~~~--~--g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~  236 (242)
T 1agj_A          182 -------------RGLRY-----YGFTVPGNSGSGIFNS--N--GELVGIHSSKVSHLDREHQINYGVGIGNYVKRI  236 (242)
T ss_dssp             -------------GSEEE-----ECCCCGGGTTCEEECT--T--SEEEEEEEEEEECSSTTCEEEEEEECCHHHHHH
T ss_pred             -------------ceEEE-----eCCcCCCCCchHhccc--C--CEEEEEEeccccccCcCCCceeeEEehHHHHHH
Confidence                         12222     1368999999999963  2  25999999999997 344567788887544443

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.95  E-value=2.5e-28  Score=219.52  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=127.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCC-ceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLT-SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..+.+++|||+|.+.   .++|+|+||+++||||||||+.+... ..+.+..+.   .. ..   .+.+.+.+++.|+. 
T Consensus         6 ~~~~~~~~P~~~~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~v~v~~~~---~~-~~---~~~~~~~~i~~~~~-   74 (204)
T 2vid_A            6 KVKDTNIFPYTGVVA---FKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNS---DK-GN---GGIYSIKKIINYPG-   74 (204)
T ss_dssp             ECSCTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHTTCCTTCEEEESCCS---SS-CC---SCEEEEEEEEECSS-
T ss_pred             EeccCCcCchhheEE---eeeEEEEEEECCEEEEChhHCCCccCCceEEEEecc---cc-CC---CcEEEeeEEecCCC-
Confidence            347789999999765   35899999999999999999976332 234332211   11 11   24577888888653 


Q ss_pred             CCCCCCCceEEEEECC--------CcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhH
Q psy15052        218 NFFTYEYDLALVRLET--------PVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKC  289 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~--------pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C  289 (422)
                           .+|||||||++        ++.|++.+.|+||+.  ....++.++++|||.....   ...+. .....+..   
T Consensus        75 -----~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~--~~~~g~~~~~~G~g~~~~~---~~~~~-~~~g~v~~---  140 (204)
T 2vid_A           75 -----KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAA--GAKAGERIKVIGYPHPYKN---KYVLY-ESTGPVMS---  140 (204)
T ss_dssp             -----SSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCS--CCCTTCEEEEEECCCCCC-----CCCE-EEEEEEEE---
T ss_pred             -----CCeEEEEEEcCcccccccccccccccccccccCC--cCCCCCEEEEEeCCCCCCC---CcceE-eeccEEee---
Confidence                 58999999995        567778899999975  3467899999999974321   11121 11111111   


Q ss_pred             HHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc---ccCCCCCceeeeccccccc
Q psy15052        290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG---CAEANLPGVCTRISKFVPW  366 (422)
Q Consensus       290 ~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~---C~~~~~p~vyt~V~~y~~W  366 (422)
                                  +...++|.     ..+.|+|||||||+..  +  +.|+||+|++..   |...+. .+|.. +.|++|
T Consensus       141 ------------~~~~~~~~-----~~~~~~GdSGGPl~~~--~--g~lvGI~s~g~~~~~~~~~~~-~~~~~-~~~~~w  197 (204)
T 2vid_A          141 ------------VEGSSIVY-----SAHTESGNSGSPVLNS--N--NELVGIHFASDVKNDDNRNAY-GVYFT-PEIKKF  197 (204)
T ss_dssp             ------------EETTEEEE-----CCCCCGGGTTCEEECT--T--SCEEEEEEEECC---CCCCEE-EECCC-HHHHHH
T ss_pred             ------------ccCCeEEE-----ecccCCCCccCcEECC--C--CeEEEEEecCccCCCcccccc-eeEeC-HHHHHH
Confidence                        23457887     3578999999999963  2  249999999973   543333 44444 889999


Q ss_pred             ccccCC
Q psy15052        367 VLDTGD  372 (422)
Q Consensus       367 I~~~i~  372 (422)
                      |+++++
T Consensus       198 I~~~~~  203 (204)
T 2vid_A          198 IAENID  203 (204)
T ss_dssp             HHHHSC
T ss_pred             HHhhcC
Confidence            999875

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.95  E-value=7.2e-29  Score=231.04  Aligned_cols=183  Identities=11%  Similarity=0.040  Sum_probs=122.9

Q ss_pred             EEEEEecCCCCceEEEccC------CEEeecccCcCCC--CCceEEEEEeeeecccCCC---------CCCcEEEeEEEE
Q psy15052        149 VKPLKESLGRPVNVYSNNE------KVDDFSTESVNSL--LTSQIKIRVGEYDFSKLEE---------PYPYQERGVVKK  211 (422)
Q Consensus       149 ~v~i~~~~~~~C~GtLIs~------~~VLTAAhCv~~~--~~~~~~V~lG~~~~~~~~~---------~~~~~~~~V~~i  211 (422)
                      +++|...+.++|+|+||++      +||||||||+...  ....+.|++|....+....         ........+.++
T Consensus        25 V~rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~  104 (268)
T 1arb_A           25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGST  104 (268)
T ss_dssp             EEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEE
T ss_pred             EEEEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccce
Confidence            3667666668899999998      6999999999752  2346778877533221110         000112237778


Q ss_pred             EECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCC-------CCCceEEEEecc
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSL-------PPVLQKVTVPIV  284 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~-------~~~L~~~~v~v~  284 (422)
                      ++|+.     ..||||||||++|+.                 .+..++++|||++......       ...++++.+...
T Consensus       105 i~h~~-----~~nDIALLrL~~~v~-----------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~  162 (268)
T 1arb_A          105 VKATY-----ATSDFTLLELNNAAN-----------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTS  162 (268)
T ss_dssp             EEEEE-----TTTTEEEEEESSCCC-----------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECS
T ss_pred             EecCC-----CCCceEEEEecCCCC-----------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeecc
Confidence            88983     469999999999752                 2345789999988654321       124555555544


Q ss_pred             Chh-hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCC--CCCceeeec
Q psy15052        285 SNE-KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEA--NLPGVCTRI  360 (422)
Q Consensus       285 ~~~-~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~--~~p~vyt~V  360 (422)
                      ... .|   |..     .+.+.|+|++...+..++|+|||||||++.    .++|+||+|||. .|+..  +.|+|||||
T Consensus       163 ~~~~~~---~~~-----~~~~~~iCag~~~~~gdtC~gdsGgPl~~~----~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v  230 (268)
T 1arb_A          163 PTSFVA---WGG-----GAGTTHLNVQWQPSGGVTEPGSSGSPIYSP----EKRVLGQLHGGPSSCSATGTNRSDQYGRV  230 (268)
T ss_dssp             CCEEEC---TTS-----SSCSSEEEEECCTTSCCCCTTCTTCEEECT----TSCEEEEEEECSCCTTCCGGGSEEEEEEH
T ss_pred             cccccc---ccc-----cccCCeEEEeeecCCCCCccCcccCCcEee----CCEEEEEEeecCcccCCCCCCCCceEEEe
Confidence            321 11   211     256789999743223379999999999873    135999999996 69865  489999999


Q ss_pred             ccccc
Q psy15052        361 SKFVP  365 (422)
Q Consensus       361 ~~y~~  365 (422)
                      +.|.+
T Consensus       231 ~~~~~  235 (268)
T 1arb_A          231 FTSWT  235 (268)
T ss_dssp             HHHHH
T ss_pred             eeeec
Confidence            87765

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.91  E-value=6e-25  Score=203.31  Aligned_cols=170  Identities=18%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             CCCCCcCeEEEE--EecCCCCceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeeccc-CCCCCCcEEEeEEEEEECC
Q psy15052        141 KNTTQRPYVKPL--KESLGRPVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSK-LEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       141 a~~~~~Pw~v~i--~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~-~~~~~~~~~~~V~~i~iHp  215 (422)
                      ++.++|||++.+  .....++|+|+||+++||||||||+.+...  ..+.++.|..+... .....+.+.+.++.+..||
T Consensus        29 ~~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp  108 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP  108 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCT
T ss_pred             hhcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCC
Confidence            467899998654  345567899999999999999999976433  46888888765432 1111122467888999999


Q ss_pred             CCCCCCCCCceEEEEECCCc---ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        216 KYNFFTYEYDLALVRLETPV---EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                       |+   ..+|||||||++++   .+++.+.|+||+.......++.++++||+.....   . .+....+.+.+.      
T Consensus       109 -~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~---~-~~~~~~~~~~~~------  174 (246)
T 1qtf_A          109 -YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSA---Y-SLYQSQIEMFND------  174 (246)
T ss_dssp             -TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTST---T-CCEEEEEEESSS------
T ss_pred             -CC---CCCCEEEEEEeCCccccccccceeeeecCCccccCCCCEEEEEECCCCCCC---c-eeEeeeeeecCc------
Confidence             65   36899999999998   5666799999986655567999999999753211   1 223333333320      


Q ss_pred             HhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       293 ~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                               +          ....+.|+|||||||+..  ++  .|+||+|++..
T Consensus       175 ---------~----------~~~~~~~~GdSGGPlv~~--~g--~lvGI~s~g~~  206 (246)
T 1qtf_A          175 ---------S----------QYFGYTEVGNSGSGIFNL--KG--ELIGIHSGKGG  206 (246)
T ss_dssp             ---------S----------BEESCCCGGGTTCEEECT--TC--CEEEEEEEEET
T ss_pred             ---------E----------EEeCCCCCCCchhheECC--CC--EEEEEEecccc
Confidence                     0          002368999999999963  22  39999999864

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.90  E-value=1.3e-25  Score=198.70  Aligned_cols=169  Identities=11%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             CCCce-EEEcc---CCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEEC
Q psy15052        157 GRPVN-VYSNN---EKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLE  232 (422)
Q Consensus       157 ~~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~  232 (422)
                      +..|+ |.++.   ++||||||||+...  ..+.|..+       .    .+.  +.. ..+.+|    ..||||||||+
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~--~~~~v~~~-------~----~~~--~g~-~~~~~~----~~~DiAll~l~   70 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGA--TTWWANSA-------R----TTV--LGT-TSGSSF----PNNDYGIVRYT   70 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTC--SEEESSTT-------S----CSE--EEE-EEEEEC----SBSCEEEEEEC
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC--CcEEecCC-------C----ceE--eEE-Eecccc----CCCCEEEEEec
Confidence            56797 88886   47999999999763  33333211       0    011  111 122222    25899999999


Q ss_pred             C-CcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEee
Q psy15052        233 T-PVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF  311 (422)
Q Consensus       233 ~-pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~  311 (422)
                      + ++.+++.++|++|+.......++.+.++||+..    .....|+.+.+.+ ....|. .+.      .+.+.|+|+  
T Consensus        71 ~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~-~~~------~~~~~~~ca--  136 (185)
T 2qa9_E           71 NTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD-VVY------GMIRTNVCA--  136 (185)
T ss_dssp             CSSSCCCCEETTEECCEECCCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC-EEE------EEEEESCCC--
T ss_pred             CCCccccCccceeeeCCcccCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC-EEe------ceEEecccC--
Confidence            9 899999999999975445567999999999642    2244577777665 222231 110      123456665  


Q ss_pred             cCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        312 DNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       312 ~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                             |+|||||||++.+     .|+||+||+.+|+..+.|++|++|+.|++||+..+
T Consensus       137 -------c~GDSGGPlv~~~-----~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          137 -------EPGDSGGPLYSGT-----RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             -------CTTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             -------CCCCccceEEECC-----EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence                   8999999999752     59999999988766778999999999999998754

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.90  E-value=3e-24  Score=193.84  Aligned_cols=184  Identities=12%  Similarity=0.109  Sum_probs=123.9

Q ss_pred             CCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCC
Q psy15052        141 KNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF  219 (422)
Q Consensus       141 a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~  219 (422)
                      +..++|||+|++.   .+.|+|+||+++||||||||+.+.. ...+.|++|...  ..     .+.+.+++++.+.   .
T Consensus         9 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~~--~~-----g~~~~~~~v~~~~---~   75 (210)
T 2as9_A            9 KDTNNFPYNGVVS---FKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDK--GN-----GGIYKIKSISDYP---G   75 (210)
T ss_dssp             SCTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGGG--CC-----SCEEEEEEEEECS---S
T ss_pred             ecCCcCCeEEEEE---eeeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCccc--CC-----CCEEEEEEEEeCC---C
Confidence            5678999999775   4689999999999999999996532 235677665421  11     2456676666543   2


Q ss_pred             CCCCCceEEEEECC--------CcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        220 FTYEYDLALVRLET--------PVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       220 ~~~~nDIALLkL~~--------pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                         .+|||||||+.        |+.|++.+.|++|+.  ....++.++++||+.....   ...+ .+...+++..    
T Consensus        76 ---~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~--~~~~g~~v~v~G~p~~~~~---~~~l-~~~~g~v~~~----  142 (210)
T 2as9_A           76 ---DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK--DAKVDDKIKVIGYPLPAQN---SFKQ-FESTGTIKRI----  142 (210)
T ss_dssp             ---SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS--CCCTTCEEEEEECSSTTTT---TSCC-EEEEEEEEEE----
T ss_pred             ---CCcEEEEEecCccccccccccccccccceeecCC--CCCCCCEEEEEeCCCCCCC---Ccce-EEeeeEEccc----
Confidence               58999999998        678888999999973  3567899999999863221   1123 3444444321    


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeec-cccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI-SKFVPWVLDT  370 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~  370 (422)
                                 ...++|..     .+.|+|||||||+..  ++  .|+||+||+........ ..|+.+ ...++|++..
T Consensus       143 -----------~~~~i~~~-----~~~~~GdSGGPlv~~--~g--~lvGI~s~g~~~~~~~~-~~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          143 -----------KDNILNFD-----AYIEPGNSGSPVLNS--NN--EVIGVVYGGIGKIGSEY-NGAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             -----------ETTEEEEE-----CCCCTTCTTCEEECT--TS--CEEEEECCSCCCTTCSS-EEEEECCHHHHHHHHTT
T ss_pred             -----------cCCeEEEc-----CccCCCCccCcEECC--CC--eEEEEEecccccCCccc-cccEEEcHHHHHHHHHh
Confidence                       23467764     468999999999963  23  39999999875322222 235544 4455666554


Q ss_pred             C
Q psy15052        371 G  371 (422)
Q Consensus       371 i  371 (422)
                      -
T Consensus       202 ~  202 (210)
T 2as9_A          202 I  202 (210)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.87  E-value=1.7e-22  Score=159.05  Aligned_cols=93  Identities=41%  Similarity=0.821  Sum_probs=83.0

Q ss_pred             CCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCC
Q psy15052        272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA  351 (422)
Q Consensus       272 ~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~  351 (422)
                      .++.|+++.+++++.++|++.+..     .+.+.||||+  ..+.+.|+|||||||++.. +++|+|+||+|||.+|+..
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~-----~i~~~~iCa~--~~~~~~C~GDSGGPL~~~~-~~~~~l~GIvS~g~~c~~~   74 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAG--ASGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCST   74 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGG-----GCCTTEEEEE--CSSCBCCTTCTTCEEEEEE-TTEEEEEEEEEECCTTCCT
T ss_pred             cCccceEEEEEECCHHHhhHHhcC-----CCCCceEeec--CCCCCCCcCCCCCcEEEEe-CCeEEEEEEEEeCCCCCCC
Confidence            467899999999999999988753     3789999998  3457999999999999984 7899999999999998878


Q ss_pred             CCCceeeecccccccccccCC
Q psy15052        352 NLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       352 ~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      +.|++||||++|++||+++++
T Consensus        75 ~~p~vyt~V~~y~~WI~~~~~   95 (97)
T 1yph_E           75 STPGVYARVTALVNWVQQTLA   95 (97)
T ss_dssp             TSEEEEEEHHHHHHHHHHHHH
T ss_pred             CCCeEEEEHHHhHHHHHHHHc
Confidence            899999999999999998875

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.82  E-value=2.4e-20  Score=141.28  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..+.+++|||||+|+..+.++|+|+||+++||||||||+.+    .+.|++|.+++....+.  .+.+.|+++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~   78 (80)
T 2pka_A            5 RECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND----NYEVWLGRHNLFENENT--AQFFGVTADFPHPGFN   78 (80)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS----CCEEEESCSBTTSCCTT--CEEEEEEEEEECTTTT
T ss_pred             EECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCC----CcEEEEeeeEcCCCCCC--cEEEEEEEEEECcCCC
Confidence            56788999999999977667899999999999999999964    46799999987654432  5889999999999997


Q ss_pred             C
Q psy15052        219 F  219 (422)
Q Consensus       219 ~  219 (422)
                      .
T Consensus        79 ~   79 (80)
T 2pka_A           79 L   79 (80)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.78  E-value=4.2e-20  Score=162.65  Aligned_cols=158  Identities=12%  Similarity=0.086  Sum_probs=107.4

Q ss_pred             CCCce-EEEcc---CCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEEC
Q psy15052        157 GRPVN-VYSNN---EKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLE  232 (422)
Q Consensus       157 ~~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~  232 (422)
                      +..|+ |.+|+   ++||||||||+...    ..+++|..+.                    +.|    ..||||||||+
T Consensus        11 ~~~ct~G~~v~~~~~~~vlTaaHc~~~~----~~~~~G~~~~--------------------~~~----~~~DiAlikl~   62 (181)
T 2sga_A           11 GSRCSLGFNVSVNGVAHALTAGHCTNIS----ASWSIGTRTG--------------------TSF----PNNDYGIIRHS   62 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC----SEETTEEEEE--------------------EEC----SBSCEEEEEES
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC----CceeecceeC--------------------CcC----CCCCEEEEEcc
Confidence            45797 99998   78999999998652    1334554320                    111    24799999999


Q ss_pred             CCcccCCCeeee----ecCC-CCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceE
Q psy15052        233 TPVEFAPNIVPI----CLPG-SDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM  307 (422)
Q Consensus       233 ~pv~~s~~v~Pi----cLp~-~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~l  307 (422)
                      +++.+++.++++    +++. ......++.+.+.||....    ....++...+.+ +..++.           ....++
T Consensus        63 ~~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~~----t~G~v~~~~~~v-~~~~~~-----------~~~~~i  126 (181)
T 2sga_A           63 NPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATV-NYGSSG-----------IVYGMI  126 (181)
T ss_dssp             CGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEEE-ECGGGC-----------EEEEEE
T ss_pred             CCCcccceEEecCCcceeecccccCCCCCEEEEeecCCCc----cEEEEEEeEEEE-ECCCCC-----------EEeeeE
Confidence            999888889988    7764 3445678999998886421    123455555554 222221           011233


Q ss_pred             EEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccc
Q psy15052        308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       308 Ca~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      +.     ..-+|+|||||||++.+     .++||+||+..|+..+.|++|++|+.|++|+.
T Consensus       127 ~~-----~~c~~~GDSGGPlv~~~-----~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          127 QT-----NVCAQPGDSGGSLFAGS-----TALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             EE-----SCCCCTTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             ec-----ccccCCCCCCCEEEECC-----EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence            32     12346899999999753     59999999976333466999999999999985

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.74  E-value=1.1e-17  Score=153.67  Aligned_cols=186  Identities=13%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             CcCeEEEEEecC-----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCC
Q psy15052        145 QRPYVKPLKESL-----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNF  219 (422)
Q Consensus       145 ~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~  219 (422)
                      -.|.+|.|....     ...++|+||+++||||||||+.+  ...+.|+++..            .+..+.+..|+    
T Consensus        40 ~~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~--~~~~~V~~~~~------------~~~~~~v~~~~----  101 (237)
T 3k6y_A           40 TEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAG--SNNVTVYAGDK------------PFEATVVSYDP----  101 (237)
T ss_dssp             HGGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTT--CSEEEEEETTE------------EEECEEEEEET----
T ss_pred             hcCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCC--CceEEEEECCc------------EEEEEEEEEcC----
Confidence            458889987542     23699999999999999999975  35688887751            23344455666    


Q ss_pred             CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCc
Q psy15052        220 FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY  299 (422)
Q Consensus       220 ~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~  299 (422)
                         .+|||||||+     +..+.|++|+ ......++.++++||+....     ..+....+.......|...+....  
T Consensus       102 ---~~DiAll~l~-----~~~~~~~~l~-~~~~~~G~~v~v~G~p~g~~-----~~~~~g~v~~~~~~~~~~~~~~~~--  165 (237)
T 3k6y_A          102 ---SVDVAILAVP-----HLPPPPLVFA-AEPAKTGADVVVLGYPGGGN-----FTATPARIREAIRLSGPDIYGDPE--  165 (237)
T ss_dssp             ---TTTEEEEECT-----TCCSCCCCBC-SSCCCTTCEEEEEECGGGCS-----CEEEEEEEEEEEEEEECCTTCCSS--
T ss_pred             ---CCCEEEEEeC-----CCCCCceecC-CCCCCCCCEEEEEECCCCCC-----CccceeEEEeeEeecccccccCCC--
Confidence               3799999998     3467899998 44466799999999985321     122222222222222222111000  


Q ss_pred             ccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCCCCc
Q psy15052        300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPL  377 (422)
Q Consensus       300 ~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~pl  377 (422)
                       .....+++.     ....|+|||||||+..  +|+  |+||+|++..-.  ..-+....+....+||++. +...|+
T Consensus       166 -~~~~~~~~~-----~~~~~~GdSGGPLv~~--~G~--vvGI~s~~~~~~--~~~~~aip~~~v~~~l~~~-~~~~~v  230 (237)
T 3k6y_A          166 -PVTRDVYTI-----RADVEQGDSGGPLIDL--NGQ--VLGVVFGAAIDD--AETGFVLTAGEVAGQLAKI-GATQPV  230 (237)
T ss_dssp             -CEEEEEEEE-----ESCCCTTCTTCEEECT--TSC--EEEEEEEECSSS--TTEEEEEEHHHHHGGGGGT-TCCSCC
T ss_pred             -cccccEEEe-----cCccCCCccHHHEECC--CCE--EEEEEEeeccCC--CcEEEEEEHHHHHHHHHHc-cCCCCC
Confidence             011122332     3568999999999963  233  999999975421  1134556677777777776 444444

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.68  E-value=1.3e-16  Score=145.65  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=109.4

Q ss_pred             CcCeEEEEEecCC----------CCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        145 QRPYVKPLKESLG----------RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       145 ~~Pw~v~i~~~~~----------~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      -.|.+|.|.....          ..++|+||+++ ||||||||+.+  ...+.|+++.           .+.+.++.+..
T Consensus        40 ~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~--~~~i~V~~~~-----------g~~~~a~v~~~  106 (231)
T 3tjo_A           40 IAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELKN-----------GATYEAKIKDV  106 (231)
T ss_dssp             HGGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCS--SSEEEEECTT-----------SCEEEEEEEEE
T ss_pred             hcCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccC--CceEEEEcCC-----------CCEEEEEEEEe
Confidence            3577788764321          35899999998 99999999976  4567776542           12344555555


Q ss_pred             CCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +|       .+|||||||+.+.    .+.++.|+.......++.++++||+...     ...+....+.......+...+
T Consensus       107 d~-------~~DlAlL~l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~~~~~~~~  170 (231)
T 3tjo_A          107 DE-------KADIALIKIDHQG----KLPVLLLGRSSELRPGEFVVAIGSPFSL-----QNTVTTGIVSTTQRGGKELGL  170 (231)
T ss_dssp             ET-------TTTEEEEECCCSS----CCCCCCBCCGGGCCTTCEEEEEEEEETT-----EEEEEEEEEEECC--------
T ss_pred             cC-------CCCEEEEEecCCC----CCCceecCCcCCCCCCCEEEEEECCCCC-----CCceeeEEEeecccccccccc
Confidence            65       3799999999763    4567888766556679999999998531     112222233322222111111


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      .      .....+++.     ....|.|||||||+..  +|+  |+||+|++..++    -+....+....+|+++.
T Consensus       171 ~------~~~~~~i~~-----da~i~~G~SGGPLv~~--~G~--vVGI~s~~~~~g----~~~aip~~~i~~~l~~~  228 (231)
T 3tjo_A          171 R------NSDMDYIQT-----DAIINYGNAGGPLVNL--DGE--VIGINTLKVTAG----ISFAIPSDKIKKFLTES  228 (231)
T ss_dssp             -----------CCEEE-----SSCCCTTTTTSEEECT--TSC--EEEEEEEEEETT----EEEEEEHHHHHHHHHHH
T ss_pred             C------CCcccEEEE-----cCCcCCCCchhHeecC--CCe--EEEEEeEEecCC----eEEEEEHHHHHHHHHHH
Confidence            0      011234554     2457899999999853  233  999999976432    24456666666776654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.66  E-value=3.6e-16  Score=150.21  Aligned_cols=188  Identities=14%  Similarity=0.087  Sum_probs=111.9

Q ss_pred             CcCeEEEEEec---CCCCceEEEccC-CEEeecccCcCCCC-------CceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        145 QRPYVKPLKES---LGRPVNVYSNNE-KVDDFSTESVNSLL-------TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       145 ~~Pw~v~i~~~---~~~~C~GtLIs~-~~VLTAAhCv~~~~-------~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ..|++|.|...   ....|+|+||++ .||||||||+.+..       ...+.|+++..           +.+.++ ++ 
T Consensus        15 ~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g-----------~~~~a~-vv-   81 (324)
T 1y8t_A           15 VVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG-----------RTAPFT-VV-   81 (324)
T ss_dssp             HGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTC-----------CEECEE-EE-
T ss_pred             hcCcEEEEEEEccCCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCC-----------CEEEEE-EE-
Confidence            46999999863   346799999998 69999999997643       23678887631           123333 22 


Q ss_pred             CCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +  |+   ..+|||||||+.+    ..+.|++|+.......++.++++||............+......+.....    .
T Consensus        82 ~--~d---~~~DlAllkl~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~----~  148 (324)
T 1y8t_A           82 G--AD---PTSDIAVVRVQGV----SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGE----A  148 (324)
T ss_dssp             E--CC---TTTTEEEEEECSC----CSCCCCEECCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC--------
T ss_pred             E--eC---CCCCEEEEEECCC----CCCceEEecCcccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccccc----c
Confidence            1  22   2589999999986    35788999865556679999999995321100000011111000100000    0


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccC--------CCCCceeeecccccc
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE--------ANLPGVCTRISKFVP  365 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~--------~~~p~vyt~V~~y~~  365 (422)
                      ..    ......++|+.     ...|+|||||||+..  +|  .|+||++++..-..        ...-+...-+....+
T Consensus       149 g~----~~~~~~~i~~d-----~~~~~G~SGGPlv~~--~G--~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~  215 (324)
T 1y8t_A          149 GN----QNTVLDAIQTD-----AAINPGNSGGALVNM--NA--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKR  215 (324)
T ss_dssp             -------CCCEEEEEEC-----SCCCTTCTTEEEECT--TS--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHH
T ss_pred             Cc----ccccCCEEEEc-----CCCCCCCccCcEECC--CC--eEEEEEeeecccCcccccccccccceEEecCHHHHHH
Confidence            00    01345688983     468999999999964  23  49999999754210        112344555555666


Q ss_pred             cccccC
Q psy15052        366 WVLDTG  371 (422)
Q Consensus       366 WI~~~i  371 (422)
                      ++.+.+
T Consensus       216 ~l~~l~  221 (324)
T 1y8t_A          216 IADELI  221 (324)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.64  E-value=1.7e-16  Score=145.45  Aligned_cols=174  Identities=17%  Similarity=0.087  Sum_probs=108.4

Q ss_pred             CCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcc
Q psy15052        158 RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE  236 (422)
Q Consensus       158 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~  236 (422)
                      +.|+|+||+++ ||||||||+.+  ...+.|+++..           +.+.++-+..+       ..+|||||||+.+. 
T Consensus        56 ~~gsG~iI~~~g~ILTnaHvv~~--~~~i~V~~~~g-----------~~~~a~vv~~d-------~~~DlAllkl~~~~-  114 (239)
T 1l1j_A           56 SLGSGFIFDPEGYILTNYHVVGG--ADNITVTMLDG-----------SKYDAEYIGGD-------EELDIAVIKIKASD-  114 (239)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHSS--CSSCEEECTTS-----------CEEEBCCCEEE-------TTTTEEEEEBCCSS-
T ss_pred             ceEEEEEEeCCCEEEEChHHhCC--CCEEEEEECCC-----------CEEEEEEEEEc-------CCCCEEEEEEcCCC-
Confidence            56999999986 99999999976  35677776531           12233212111       25899999999875 


Q ss_pred             cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCC
Q psy15052        237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR  316 (422)
Q Consensus       237 ~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~  316 (422)
                        ..+.|++|+.......++.++++||+....     ..+.   .-+++...|.  +..... ......++|+.     .
T Consensus       115 --~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~-----~~vt---~Givs~~~r~--~~~~~~-~~~~~~~i~td-----a  176 (239)
T 1l1j_A          115 --KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQ-----HTVT---VGVVSATNRR--IPKPDG-SGYYVGLIQTD-----A  176 (239)
T ss_dssp             --SCCCCCEECCGGGCCTTCEEEEEECTTSSS-----CEEE---EEEEEEEEEE--EECTTS-SCEEEEEEEES-----S
T ss_pred             --CCCceEEecCccCCccccEEEEEECCCCCC-----CcEE---EEEEeccccc--cccCCC-ccccCCEEEEC-----C
Confidence              467889998655556799999999985321     1111   1222211111  000000 00134578873     5


Q ss_pred             CCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       317 ~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                      ..|+|||||||+..  +|  .|+||+|++..-+....-+...-+...++++++.++.+
T Consensus       177 ~i~~G~SGGPLv~~--~G--~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g  230 (239)
T 1l1j_A          177 AINPGNSGGPLLNI--HG--EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQK  230 (239)
T ss_dssp             CCCTTTTTSEEECS--SS--EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC--
T ss_pred             CCCCCCccHHhccC--CC--eEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCC
Confidence            68999999999853  23  49999999865111123455667777788888776543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.62  E-value=4.1e-16  Score=151.06  Aligned_cols=172  Identities=16%  Similarity=0.129  Sum_probs=112.8

Q ss_pred             CceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCccc
Q psy15052        159 PVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF  237 (422)
Q Consensus       159 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~  237 (422)
                      .++|+||+++ ||||||||+.+  ...+.|.++.           .+.+..+-+..++       .+|||||||+.+.  
T Consensus        54 ~GSG~iI~~~G~IlT~aHvv~~--~~~i~V~~~~-----------g~~~~a~~v~~d~-------~~DlAlLkl~~~~--  111 (348)
T 3qo6_A           54 SGSGFVWDKQGHIVTNYHVIRG--ASDLRVTLAD-----------QTTFDAKVVGFDQ-------DKDVAVLRIDAPK--  111 (348)
T ss_dssp             EEEEEEEETTTEEEECHHHHTT--CSEEEEECTT-----------SCEEEEEEEEEEG-------GGTEEEEECCCCG--
T ss_pred             eEEEEEEeCCCEEEECHHHhCC--CcEEEEEECC-----------CCEEEEEEEEEcC-------cCCEEEEEEcCCC--
Confidence            5899999998 99999999976  4567776542           1234454455554       3799999999863  


Q ss_pred             CCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCC
Q psy15052        238 APNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD  317 (422)
Q Consensus       238 s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~  317 (422)
                       ..+.|++|+.......++.++++||+....     ..+....+..+....|.....      .....+++.     ...
T Consensus       112 -~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~-----~~~~~g~vs~~~~~~~~~~~~------~~~~~~i~~-----da~  174 (348)
T 3qo6_A          112 -NKLRPIPVGVSADLLVGQKVFAIGNPFGLD-----HTLTTGVISGLRREISSAATG------RPIQDVIQT-----DAA  174 (348)
T ss_dssp             -GGCCCCCBCCSTTCCTTCEEEEEECGGGCT-----TEEEEEEEEEEEEEECCSSSS------SCEEEEEEE-----CSC
T ss_pred             -CCceeEEecCcccCCCCCEEEEEECCCCCC-----CcEeEEEEEeeccccccccCC------CcccCEEEE-----eCC
Confidence             367889998766667899999999986422     223333333332222211000      011233443     346


Q ss_pred             CCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccCCC
Q psy15052        318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       318 ~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .|.|||||||+..  +|+  ++||+|++.. ++.....+.+..+....+||++.++.
T Consensus       175 i~~G~SGGPLvn~--~G~--vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~  227 (348)
T 3qo6_A          175 INPGNSGGPLLDS--SGT--LIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRF  227 (348)
T ss_dssp             CCTTCTTCEEECT--TSC--EEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHhhCC--CCe--EEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhC
Confidence            8999999999953  232  9999999754 33334567788888888888876543

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.58  E-value=1.1e-14  Score=140.21  Aligned_cols=178  Identities=16%  Similarity=0.131  Sum_probs=107.5

Q ss_pred             cCeEEEEEecC----------CCCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        146 RPYVKPLKESL----------GRPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       146 ~Pw~v~i~~~~----------~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .|-+|.|....          ...++|+||+++ ||||||||+.+  ...+.|.++.           ...+.++.+..|
T Consensus        24 ~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~~--~~~i~V~~~~-----------g~~~~a~~~~~d   90 (332)
T 3num_A           24 APAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELKN-----------GATYEAKIKDVD   90 (332)
T ss_dssp             GGGEEEEEEEEECTTSSCEEEEEEEEEEEEETTTEEEECTTTCCT--TSEEEEEETT-----------SCEEEEEEEEEE
T ss_pred             cCcEEEEEEEeccccCCCcceeeeEEEEEEeCCCEEEEChHHcCC--CCEEEEEECC-----------CCEEEEEEEEec
Confidence            46667775421          134899999998 99999999976  4567777643           134566667777


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      |.       +|||||||+.+.    .+.++.|+.......++.++++||+...     ...+....+.......+...+.
T Consensus        91 ~~-------~DlAlL~l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~~~~~~~~~  154 (332)
T 3num_A           91 EK-------ADIALIKIDHQG----KLPVLLLGRSSELRPGEFVVAIGSPFSL-----QNTVTTGIVSTTQRGGKELGLR  154 (332)
T ss_dssp             TT-------TTEEEEEECCSS----CCCCCCBCCTTSCCTTCEEEEECC----------CCEEEEEEEEC----------
T ss_pred             CC-------CCeEEEEEcCCC----CCceeeecCcccCCCCCEEEEEECCCCC-----CcceeeeEEEeecccccccCcC
Confidence            64       699999999863    4567788766656779999999998532     1223333333333322222111


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                      .      ....+++.     ....|.|||||||+..  +|+  ++||+|++...+    -+....+.....|+.+.+
T Consensus       155 ~------~~~~~i~~-----d~~i~~G~SGGPlv~~--~G~--vvGI~s~~~~~g----~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          155 N------SDMDYIQT-----DAIINYGNAGGPLVNL--DGE--VIGINTLKVTAG----ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             ----------CCEEE-----SSCCCTTTTTSEEEET--TSC--EEEEEEEEEETT----EEEEEEHHHHHHHHHHHC
T ss_pred             C------CcCCEEEE-----ECCcCCCCcHHHhhCC--CCc--EEEEEeeEeccc----ceEEECHHHHHHHHHHHh
Confidence            1      11234554     2357789999999953  232  999999976432    244555555666665543

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.56  E-value=8.5e-15  Score=134.18  Aligned_cols=167  Identities=13%  Similarity=0.052  Sum_probs=104.9

Q ss_pred             CceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCccc
Q psy15052        159 PVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF  237 (422)
Q Consensus       159 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~  237 (422)
                      .++|+||+++ ||||||||+.+  ...+.|.+..           .+.+..+-+..||.       +|||||||+.+.  
T Consensus        54 ~GsG~ii~~~G~IlTaaHvv~~--~~~~~V~~~~-----------g~~~~a~vv~~d~~-------~DlAll~l~~~~--  111 (237)
T 3lgi_A           54 LGSGVIMDQRGYIITNKHVIND--ADQIIVALQD-----------GRVFEALLVGSDSL-------TDLAVLKINATG--  111 (237)
T ss_dssp             EEEEEEEETTTEEEEEHHHHTT--CSEEEEECTT-----------SCEEEEEEEEEETT-------TTEEEEECCCSS--
T ss_pred             EEEEEEEeCCCEEEEeeeecCC--CCEEEEEeCC-----------CCEEEEEEEEEcCC-------CCEEEEEecCCC--
Confidence            5899999998 99999999976  3456666532           12445555566664       699999999765  


Q ss_pred             CCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCC
Q psy15052        238 APNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD  317 (422)
Q Consensus       238 s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~  317 (422)
                        .+.++.|+.......++.++++||+...     ...+....+.......+..         ......++.     ...
T Consensus       112 --~~~~~~l~~~~~~~~G~~v~~~G~p~~~-----~~~~~~g~vs~~~~~~~~~---------~~~~~~i~~-----d~~  170 (237)
T 3lgi_A          112 --GLPTIPINARRVPHIGDVVLAIGNPYNL-----GQTITQGIISATGRIGLNP---------TGRQNFLQT-----DAS  170 (237)
T ss_dssp             --CCCCCCCCTTCCCCTTBEEEEEECGGGS-----CSEEEEEEEEEECCSSCCT---------TSCSCCEEE-----CSC
T ss_pred             --CCceEeccCcccCCCCCEEEEEECCCCC-----CCcEEEEEEEecccccccC---------CCcCCEEEE-----cCc
Confidence              3567888765556779999999998532     1223333333222211110         012334554     245


Q ss_pred             CCcCCCCCCceeecCCCcEEEeeEEeecccccC----CCCCceeeecccccccccccCC
Q psy15052        318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE----ANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       318 ~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~----~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      .|.|||||||+..  +|+  |+||+|++..-..    ...-+....+....+++++.++
T Consensus       171 i~~G~SGGPlv~~--~G~--vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          171 INHGNSGGALVNS--LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             CCTTCTTCEEECT--TCC--EEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCCCchHHeeCC--CCe--EEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            7999999999953  333  9999999754321    1112344555566666666554

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.53  E-value=1.4e-14  Score=138.88  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=104.4

Q ss_pred             CCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcc
Q psy15052        158 RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE  236 (422)
Q Consensus       158 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~  236 (422)
                      ..|+|++|+++ ||||||||+.+  ...+.|+++..           +.+.++-+.    |+   ..+|||||||+.+. 
T Consensus        47 ~~gsG~iI~~~G~IlT~aHvv~~--~~~i~V~~~~g-----------~~~~a~v~~----~d---~~~DlAllkl~~~~-  105 (325)
T 1lcy_A           47 SNGSGFVVAADGLIVTNAHVVAD--RRRVRVRLLSG-----------DTYEAVVTA----VD---PVADIATLRIQTKE-  105 (325)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTT--CSEEEEECTTS-----------CEEEEEEEE----EE---TTTTEEEEECCCSS-
T ss_pred             ccEEEEEEeCCCEEEECHHHcCC--CCEEEEEeCCC-----------CEEEEEEEE----EC---CCCCEEEEEEcCCC-
Confidence            46999999998 99999999986  35677776521           123332221    22   25899999999763 


Q ss_pred             cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH-HhhcCCcccccCceEEEeecCCC
Q psy15052        237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM-FLRAGRYEFISDIFMCAGFDNGG  315 (422)
Q Consensus       237 ~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~-~~~~~~~~~i~~~~lCa~~~~~~  315 (422)
                         .+.|++|+.......++.++++||+....     .   ....-+++...|... +..    ......++|+.     
T Consensus       106 ---~~~~~~l~~~~~~~~G~~v~~~G~p~~~~-----~---~v~~G~vs~~~~~~~~~g~----~~~~~~~i~~d-----  165 (325)
T 1lcy_A          106 ---PLPTLPLGRSADVRQGEFVVAMGSPFALQ-----N---TITSGIVSSAQRPARDLGL----PQTNVEYIQTD-----  165 (325)
T ss_dssp             ---CCCCCCBCCGGGCCTTCEEEECCCTTSSS-----S---CCEEEEBCSCSCC-------------CCCCEEES-----
T ss_pred             ---CCceEEecccccCCCCCEEEEEECCCCCC-----C---cEEeEEEecccccccccCC----CCCCCCEEEEc-----
Confidence               46788887654556799999999986421     1   233444554445321 110    01345689984     


Q ss_pred             CCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       316 ~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                      ...|+|||||||+..  +|+  |+||++++..-    .-+....+....+|+++..
T Consensus       166 ~~~~~G~SGGPl~~~--~G~--vVGI~s~~~~~----g~~~aip~~~i~~~l~~~~  213 (325)
T 1lcy_A          166 AAIDFGNAGGPLVNL--DGE--VIGVNTMKVTA----GISFAIPSDRLREFLHRGE  213 (325)
T ss_dssp             SCCSTTTTTSEEEET--TSC--EEEEEEEEEET----TEEEEEEHHHHHHHTCC--
T ss_pred             CCCCCCCccccEECC--CCE--EEEEEeEeecC----CeeEEEEHHHHHHHHHHhh
Confidence            468999999999963  232  99999997531    1244555555666666543

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.50  E-value=4.7e-14  Score=134.98  Aligned_cols=166  Identities=13%  Similarity=0.031  Sum_probs=101.6

Q ss_pred             CCceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcc
Q psy15052        158 RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVE  236 (422)
Q Consensus       158 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~  236 (422)
                      ..|+|+||+++ ||||||||+.+  ...+.|.++..           +.+..+-+..+       ..+||||||++.+  
T Consensus        42 ~~gsG~iI~~~G~IlT~aHvv~~--~~~i~V~~~~g-----------~~~~a~v~~~d-------~~~DlAllk~~~~--   99 (318)
T 1te0_A           42 TLGSGVIMDQRGYIITNKHVIND--ADQIIVALQDG-----------RVFEALLVGSD-------SLTDLAVLIIKAT--   99 (318)
T ss_dssp             EEEEEEECSTTCEEEEEHHHHTT--CSEEEEECTTS-----------CEEEEEEEEEE-------TTTTEEEEECCCS--
T ss_pred             ccEEEEEEeCCCEEEECHHHcCC--CCEEEEEeCCC-----------CEEEEEEEEeC-------CCceEEEEEEeCC--
Confidence            46999999998 99999999976  34567765421           12233222222       2589999999976  


Q ss_pred             cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCC
Q psy15052        237 FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR  316 (422)
Q Consensus       237 ~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~  316 (422)
                        ..+.|++|+.......++.++++||....     ...+....+.-....    .+..     .....++|+.     .
T Consensus       100 --~~~~~~~l~~~~~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~~----~~~~-----~~~~~~i~~d-----~  158 (318)
T 1te0_A          100 --GGLPTIPINARRVPHIGDVVLAIGNPYNL-----GQTITQGIISATGRI----GLNP-----TGRQNFLQTD-----A  158 (318)
T ss_dssp             --SCCCCCCCCTTCCCCTTCEEEEECCCSSS-----SCCEEEEEEEECCCC----CCCT-----TCSCCSEEES-----S
T ss_pred             --CCCceEEeeCccCCCCCCEEEEEEcCCCC-----CCcEEeeEEeccccc----ccCC-----CCcCCEEEEC-----C
Confidence              35678888765556779999999975321     112222222222110    0100     1234678873     4


Q ss_pred             CCCcCCCCCCceeecCCCcEEEeeEEeeccccc----CCCCCceeeeccccccccccc
Q psy15052        317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA----EANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       317 ~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~----~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      ..|+|+|||||+..  +|  .++||++++..-.    ....-+....+....+|+++.
T Consensus       159 ~~~~G~SGGPl~~~--~G--~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l  212 (318)
T 1te0_A          159 SINHGNSGGALVNS--LG--ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKL  212 (318)
T ss_dssp             CCCTTTTTSEEECT--TC--CEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHH
T ss_pred             CCCCCCCcCceECC--CC--eEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHH
Confidence            68999999999963  23  2999999975421    112234455555555555544

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.44  E-value=6.1e-13  Score=121.99  Aligned_cols=169  Identities=17%  Similarity=0.117  Sum_probs=99.2

Q ss_pred             CCCceEEEccCC--EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCC
Q psy15052        157 GRPVNVYSNNEK--VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP  234 (422)
Q Consensus       157 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~p  234 (422)
                      ...++|+||+++  ||||+|||+.+  ...+.|.+..           ...+..+-+..++.       +|||||||+.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAlLkv~~~  121 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIALLQIQNP  121 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC------CEEEECTT-----------SCEEEEEEEEEETT-------TTEEEEEESSC
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCC--CCEEEEEECC-----------CCEEEEEEEEecCC-------CCEEEEEeccC
Confidence            356899999998  99999999986  3456676532           12345555556653       79999999864


Q ss_pred             cccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCC
Q psy15052        235 VEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNG  314 (422)
Q Consensus       235 v~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~  314 (422)
                      .    .+.++.|........++.++++||....     ...+....+......   . +..     .....++|..    
T Consensus       122 ~----~~~~~~l~~s~~~~~G~~v~aiG~P~g~-----~~~vt~G~vs~~~~~---~-~~~-----~~~~~~i~td----  179 (245)
T 3sti_A          122 S----KLTQIAIADSDKLRVGDFAVAVGNPFGL-----GQTATSGIVSALGRS---G-LNL-----EGLENFIQTD----  179 (245)
T ss_dssp             C----SCCCCCBCCGGGCCTTBEEEEEECGGGS-----CCEEEEEEEEECSSC---S-SCC-----TTCSSCEEES----
T ss_pred             C----CCceeeecCcCCCCCCCEEEEEECCCCC-----CCcEEeeEEeeeccc---c-cCC-----CCccCEEEEc----
Confidence            3    4567777765556679999999985321     112222223222211   0 000     1223456663    


Q ss_pred             CCCCCcCCCCCCceeecCCCcEEEeeEEeecccccC-CCCCceeeecccccccccccCC
Q psy15052        315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAE-ANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       315 ~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~-~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                       ...|.|+|||||+..  +|+  |+||+++...... ...-+....+...++++++.++
T Consensus       180 -a~i~~G~SGGPLvn~--~G~--vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~  233 (245)
T 3sti_A          180 -ASINRGNSGGALLNL--NGE--LIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLID  233 (245)
T ss_dssp             -SCCCTTTTTSEEECT--TSC--EEEEEECCC------CCCEEEEEHHHHHHHHHHHHH
T ss_pred             -CCcCCCcchhHeecC--CCe--EEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHH
Confidence             357899999999843  233  9999999754321 1122344455556666665543

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.43  E-value=1.8e-13  Score=120.49  Aligned_cols=162  Identities=13%  Similarity=0.065  Sum_probs=99.1

Q ss_pred             CCCCce-EEEccC---CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEE-eEEEEEECCCCCCCCCCCceEEEE
Q psy15052        156 LGRPVN-VYSNNE---KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQER-GVVKKMVHPKYNFFTYEYDLALVR  230 (422)
Q Consensus       156 ~~~~C~-GtLIs~---~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~-~V~~i~iHp~y~~~~~~nDIALLk  230 (422)
                      ++..|+ |.++++   .|||||+||+...  ..+  .++.      .    .+.. .+.. ...|       .+|+||||
T Consensus        10 ~~~~CT~Gfiv~~~g~~~ilT~~Hv~~~~--~~v--~~~~------~----~~~~g~~~~-~~~~-------~~DiAlik   67 (187)
T 1hpg_A           10 GGSRCSAAFNVTKGGARYFVTAGHCTNIS--ANW--SASS------G----GSVVGVREG-TSFP-------TNDYGIVR   67 (187)
T ss_dssp             TTEEEECCEEEEETTEEEEEECHHHHTTC--SEE--ESST------T----CCEEEEEEE-EECS-------BSCEEEEE
T ss_pred             CCCcCcceEEEEECCeeEEEECcccCCCC--CeE--EeCC------C----ceeEEEEeC-ccCC-------CCCEEEEE
Confidence            355685 888876   4999999999753  222  2110      0    0110 1111 1112       47999999


Q ss_pred             ECCCcccCCCeee-----eecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCc
Q psy15052        231 LETPVEFAPNIVP-----ICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDI  305 (422)
Q Consensus       231 L~~pv~~s~~v~P-----icLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~  305 (422)
                      |+.++.+.+.+..     +.+........++.+...||....    ....+......+.        +..     ....+
T Consensus        68 l~~~~~~~~~v~~~~g~~~~i~~~~~~~~G~~v~~~G~~~g~----t~G~v~~~~~~v~--------~~~-----~~~~~  130 (187)
T 1hpg_A           68 YTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKV----TSGTVTAVNVTVN--------YGD-----GPVYN  130 (187)
T ss_dssp             ECSSCCCCSEEECSSSCEEECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEEEE--------ETT-----EEEEE
T ss_pred             eCCCCCcCceEEecCCceeeeccccCCCCCCEEEEEEcCCCE----eEEEEEEeEEEEE--------eCC-----CeEee
Confidence            9987665443321     344333445679999999987321    1122333333321        100     02345


Q ss_pred             eEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccc
Q psy15052        306 FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       306 ~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI  367 (422)
                      ++|+.     ...|+|||||||+..+     .++||+|++.. |. ...+++|++|..+++.+
T Consensus       131 ~i~t~-----~~~~~GdSGgpl~~~~-----~~vGi~s~~~~~~~-~~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          131 MVRTT-----ACSAGGDSGGAHFAGS-----VALGIHSGSSGCSG-TAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEC-----CCCCTTCTTCEEEETT-----EEEEEEEEESCCBT-TBCCCEEEEHHHHHHHH
T ss_pred             eEEec-----cccCCCCCCCeEEECC-----EEEEEEEeeCCCCC-CCCceEEEEHHHHHHHc
Confidence            88874     4678999999999753     49999999875 65 45699999999887654

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.35  E-value=2.1e-13  Score=119.98  Aligned_cols=157  Identities=16%  Similarity=0.171  Sum_probs=92.7

Q ss_pred             CCCce-EEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        157 GRPVN-VYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       157 ~~~C~-GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ...|+ |.+++. +||||+||+...  ..  |.+.  +         .   .+    ++.+|    ..+|||||||+.+.
T Consensus        14 ~~~CT~Gf~~~~-~ilTa~Hc~~~~--~~--v~~~--d---------g---~v----~~~~~----~~~DiAlikl~~~~   66 (189)
T 2ea3_A           14 RSRCSIGFAVNG-GFITAGHCGRTG--AT--TANP--T---------G---TF----AGSSF----PGNDYAFVRTGAGV   66 (189)
T ss_dssp             EEEEECCEEETT-EEEECGGGCCTT--CE--EETT--T---------E---EE----EEEEC----SBSCEEEEEECTTC
T ss_pred             CCCCccCEEccC-eEEEchhcCCCC--CE--EEeC--C---------c---EE----EeeCC----CCCCEEEEEECCCC
Confidence            35695 555554 999999999752  22  2210  0         0   11    12222    14799999999987


Q ss_pred             ccCCCee-----eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEe
Q psy15052        236 EFAPNIV-----PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG  310 (422)
Q Consensus       236 ~~s~~v~-----PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~  310 (422)
                      .+++.+.     +++|+.......++.+.  .||.+.  +     +....+..++...+   +.. +....+...++|+.
T Consensus        67 ~~~~~v~~~~g~~v~l~~s~~~~vG~~v~--~~G~~t--G-----~t~G~Vs~~~~~v~---~~~-~~~~~~~~~~~~~~  133 (189)
T 2ea3_A           67 NLLAQVNNYSGGRVQVAGHTAAPVGSAVC--RSGSTT--G-----WHCGTITALNSSVT---YPE-GTVRGLIRTTVCAE  133 (189)
T ss_dssp             EEEEEEECSSSCEEECCBCCCCCTTCEEE--EEETTT--E-----EEEEEEEEEEEEEE---ETT-EEEEEEEEESCCCC
T ss_pred             ccccceEecCCceeecCCCcCCCCCCEEE--EEEeCC--c-----cEEEEEEecceEEE---eCC-ccCcceEEeeeecc
Confidence            7666665     77887655556677655  445331  1     22233332222111   000 00000223345543


Q ss_pred             ecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeeccccccccc
Q psy15052        311 FDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       311 ~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~  368 (422)
                               +|||||||++++     .++||+|++.+ |. ...+++|++|..+++|..
T Consensus       134 ---------~GDSGgpl~~~~-----~~vGi~s~~~~~c~-~~~~~~~~pi~~~l~~~g  177 (189)
T 2ea3_A          134 ---------PGDSGGSLLAGN-----QAQGVTSGGSGNCR-TGGTTFFQPVNPILQAYG  177 (189)
T ss_dssp             ---------TTCTTCEEEETT-----EEEEEEEEEEEETT-TEEEEEEEEHHHHHHHHT
T ss_pred             ---------CCCccCeEEECC-----EEEEEEeecCCCCC-CCCcEEEEEHHHHHHHCC
Confidence                     799999999643     49999999876 64 346899999999998864

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.24  E-value=2.3e-12  Score=100.75  Aligned_cols=50  Identities=46%  Similarity=0.940  Sum_probs=46.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++||.+.. .++|+|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus        45 GDSGGPL~~~~-~~~~~l~GIvS~g~~c~~~~~p~vyt~V~~y~~WI~~~~   94 (97)
T 1yph_E           45 GDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL   94 (97)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECCTTCCTTSEEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEe-CCeEEEEEEEEeCCCCCCCCCCeEEEEHHHhHHHHHHHH
Confidence            47999999876 789999999999999988889999999999999999986

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.17  E-value=9.9e-11  Score=112.85  Aligned_cols=143  Identities=19%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             CCceEEEccCC--EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        158 RPVNVYSNNEK--VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       158 ~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ..++|.+|+++  ||||+|||+.+  ...+.|.+..           .+.+..+-+..||.       +||||||++.+.
T Consensus        63 ~~GSGfiI~~~~G~IlTnaHVv~~--~~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAlLkv~~~~  122 (345)
T 3stj_A           63 GLGSGVIINASKGYVLTNNHVINQ--AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIALLQIQNPS  122 (345)
T ss_dssp             EEEEEEEEETTTTEEEECHHHHTT--EEEEEEECTT-----------SCEEEEEEEEEETT-------TTEEEEEESSCC
T ss_pred             eeEEEEEEECCCCEEEEChHHhCC--CCEEEEEeCC-----------CcEEEEEEEEEcCC-------CCEEEEEEcccC
Confidence            45899999997  99999999986  3556666532           23456666777774       699999997653


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCC
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG  315 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~  315 (422)
                          .+.++.|........++.++++||.....     .......+.-...   .. ...     .....+++.     .
T Consensus       123 ----~~~~~~l~~s~~~~~G~~V~aiG~p~g~~-----~~vt~G~Vs~~~~---~~-~~~-----~~~~~~iq~-----d  179 (345)
T 3stj_A          123 ----KLTQIAIADSDKLRVGDFAVAVGNPFGLG-----QTATSGIVSALGR---SG-LNL-----EGLENFIQT-----D  179 (345)
T ss_dssp             ----SCCCCCBCCGGGCCTTBEEEEEECGGGCS-----CEEEEEEEEEEEE---CC-SSS-----SSSCCEEEE-----C
T ss_pred             ----CCceEeecCcccCCCCCEEEEEECCCCCC-----CcEEeeEEeeecc---cc-cCC-----CCccCEEEE-----e
Confidence                45667776655567799999999964211     1112222221111   00 000     012334554     3


Q ss_pred             CCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       316 ~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      ...|.|+|||||+..  +|+  ++||+++...
T Consensus       180 a~i~~GnSGGPLvn~--~G~--vVGI~s~~~~  207 (345)
T 3stj_A          180 ASINRGNSGGALLNL--NGE--LIGINTAILA  207 (345)
T ss_dssp             SCCCTTCTTCEEECT--TSC--EEEEEEEEEC
T ss_pred             cccCCCcCccceeCC--CCE--EEEEEecccc
Confidence            467899999999853  233  9999998643

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=99.14  E-value=4.8e-12  Score=110.95  Aligned_cols=154  Identities=18%  Similarity=0.248  Sum_probs=86.3

Q ss_pred             CCCc-eEEEccC---CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEEC
Q psy15052        157 GRPV-NVYSNNE---KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLE  232 (422)
Q Consensus       157 ~~~C-~GtLIs~---~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~  232 (422)
                      +..| .|.++++   .+||||+||+..  ...+.+..|              +  +... -.|       .+|+|||||+
T Consensus        13 ~~~CT~Gf~v~~~~~~~ilTa~Hc~~~--g~~v~~~~g--------------~--v~~~-~~~-------~~D~Alikl~   66 (186)
T 2pfe_A           13 NYRCSIGFSVRQGSQTGFATAGHCGST--GTRVSSPSG--------------T--VAGS-YFP-------GRDMGWVRIT   66 (186)
T ss_dssp             TEEEECCEEEEETTEEEEEECGGGCCT--TCEEBTTTE--------------E--EEEE-ECS-------BSCEEEEEEC
T ss_pred             CCcEEeeEEEEcCCeeEEEEChhhCCC--CCEEEEeeE--------------E--EEec-CCC-------CCCEEEEEeC
Confidence            3458 4777754   599999999975  223322001              1  1100 012       4799999999


Q ss_pred             CCcccCCCee-----eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEecc-ChhhHHHHHhhcCCcccccCce
Q psy15052        233 TPVEFAPNIV-----PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIV-SNEKCRSMFLRAGRYEFISDIF  306 (422)
Q Consensus       233 ~pv~~s~~v~-----PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~-~~~~C~~~~~~~~~~~~i~~~~  306 (422)
                      .+....+.+.     ++.+........++.+...|.-.    +-....+......+. ...    .+.      .+...+
T Consensus        67 ~~~~~~~~v~~~~g~~~~i~~~~~~~vG~~vc~~G~~t----G~t~G~vs~~~~tv~~~~~----~~~------~~~~~~  132 (186)
T 2pfe_A           67 SADTVTPLVNRYNGGTVTVTGSQEAATGSSVCRSGATT----GWRCGTIQSKNQTVRYAEG----TVT------GLTRTT  132 (186)
T ss_dssp             TTSEEEEEEECSSSCEEECCBCCCCCTTCEEEEEETTT----EEEEEEEEEEEEEEEETTE----EEE------EEEEES
T ss_pred             CCcccccceeccCCceEecCCCCCCCCCCeEEEEEeCC----ceEEEEEEEEeeeEEeCCc----eEe------ceEecc
Confidence            8775555554     55565444556677655555311    000011112222211 110    010      133445


Q ss_pred             EEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccc
Q psy15052        307 MCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVP  365 (422)
Q Consensus       307 lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~  365 (422)
                      +|+.         +|||||||++++     .++||+|++.. |. ...+++|++|..+++
T Consensus       133 ~c~~---------~GDSGgpl~~~~-----~~vGi~s~g~~~c~-~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          133 ACAE---------GGDSGGPWLTGS-----QAQGVTSGGTGDCR-SGGITFFQPINPLLS  177 (186)
T ss_dssp             CCCC---------TTCTTCEEEETT-----EEEEEEEEEEEETT-TEEEEEEEEHHHHHH
T ss_pred             EEec---------CCCccCeEEECC-----EEEEEEeecCCCCC-CCCcEEEEEHHHHHH
Confidence            6663         699999999743     49999999865 64 345799999887654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.05  E-value=1.8e-09  Score=107.37  Aligned_cols=144  Identities=18%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             CCCceEEEccCC--EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCC
Q psy15052        157 GRPVNVYSNNEK--VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETP  234 (422)
Q Consensus       157 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~p  234 (422)
                      ...++|.+|+++  ||||+|||+.+  ...+.|.+..           ...+..+-+..||.       +||||||++.+
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAllkv~~~  121 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIALLQIQNP  121 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCC--CCEEEEEeCC-----------CCEEEEEEEEEcCC-------CCEEEEEecCC
Confidence            346899999997  99999999986  4567777632           23456666667764       69999999764


Q ss_pred             cccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCC
Q psy15052        235 VEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNG  314 (422)
Q Consensus       235 v~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~  314 (422)
                      .    .+.++.|........++.++++||....     ........+.-....   . +...     ....++..     
T Consensus       122 ~----~l~~~~l~~s~~~~~G~~v~aiG~P~g~-----~~~vt~G~vs~~~r~---~-~~~~-----~~~~~iq~-----  178 (436)
T 4a8c_A          122 S----KLTQIAIADSDKLRVGDFAVAVGNPFGL-----GQTATSGIVSALGRS---G-LNLE-----GLENFIQT-----  178 (436)
T ss_pred             C----CCceEeccCcccCCCCCEEEEEEcCCCC-----CccEEEEEEeeeccc---c-cCCC-----CccCEEEE-----
Confidence            3    4667888766666789999999986321     112222222222211   0 0000     11234443     


Q ss_pred             CCCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       315 ~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      ....|.|+|||||+..  +|  .++||+++...
T Consensus       179 da~i~~GnSGGPl~n~--~G--~vvGI~~~~~~  207 (436)
T 4a8c_A          179 DASINRGNAGGALLNL--NG--ELIGINTAILA  207 (436)
T ss_pred             cCccCCCCCcCcccCC--CC--EEEEEEeeecc
Confidence            3457899999999853  23  39999988654

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.01  E-value=1.7e-10  Score=107.76  Aligned_cols=51  Identities=53%  Similarity=1.049  Sum_probs=47.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. .++|+|+||+|||..|+..+.|+|||||++|++||+++|.
T Consensus       219 GDSGGPLv~~~-~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~~~~~  269 (276)
T 2vnt_A          219 GDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK  269 (276)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCeEEEee-CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            57899998876 6899999999999999998999999999999999999873

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=98.96  E-value=4.4e-10  Score=102.73  Aligned_cols=52  Identities=52%  Similarity=1.025  Sum_probs=48.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.+...+++|+|+|++|||..|+..+.|+|||||++|++||+++++
T Consensus       189 GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          189 GDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             CcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            5789999988888999999999999999988899999999999999999875

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.93  E-value=4.9e-10  Score=98.39  Aligned_cols=156  Identities=16%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             CCc-eEEEcc--CC--EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEEC
Q psy15052        158 RPV-NVYSNN--EK--VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLE  232 (422)
Q Consensus       158 ~~C-~GtLIs--~~--~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~  232 (422)
                      ..| .|.+++  +-  +||||+||+...  ..  +.+.  +          ..-.+...  .  |    ..+|+|||||+
T Consensus        13 ~~CTsGf~v~~~~G~~~ilTa~Hc~~~g--~~--v~~~--d----------~~g~v~~~--~--~----p~~DiAlikl~   68 (188)
T 2oua_A           13 GRCSVGFAATNASGQPGFVTAGHCGSVG--TQ--VSIG--N----------GRGVFERS--V--F----PGNDAAFVRGT   68 (188)
T ss_dssp             SEEECCEEEECTTCCEEEEECGGGCCTT--CE--EEET--T----------EEEEEEEE--E--C----SBSCEEEEEEE
T ss_pred             CcEecCEEEEeCCCCEEEEECcccCCCC--CE--EEec--C----------ceEEEEee--C--C----CCCCEEEEEeC
Confidence            458 577775  33  999999999642  22  2211  0          11112211  1  1    24799999999


Q ss_pred             CCcccCCCeee------eecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCce
Q psy15052        233 TPVEFAPNIVP------ICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIF  306 (422)
Q Consensus       233 ~pv~~s~~v~P------icLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~  306 (422)
                      .+....+.+.+      +.|........++.+...|.-.    +-....+......+...+.   .+      ..+...+
T Consensus        69 ~~~~~~~~v~~~g~~~~~~l~~~~~~~vG~~v~~~G~~t----G~t~G~v~~~~~~v~~~~~---~~------~~~~~~~  135 (188)
T 2oua_A           69 SNFTLTNLVSRYNSGGYATVSGSSTAPIGSQVCRSGSTT----GWYCGTIQARNQTVSYPQG---TV------HSLTRTS  135 (188)
T ss_dssp             ESCEEEEEEECGGGCSEEECCBCCCCCTTCEEEEEETTT----EEEEEEEEEEEEEEEETTE---EE------EEEEEES
T ss_pred             CCCccccceeecCCcceEeccCccCCCCCCeEEEEEcCC----CeEEEEEEEEeeEEEeCCC---cE------eeeEeee
Confidence            87654444432      4565545556788666655210    0000111222222110000   00      0022334


Q ss_pred             EEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccc
Q psy15052        307 MCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVP  365 (422)
Q Consensus       307 lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~  365 (422)
                      +|+.         +|||||||+.++     .++||+|++.. |. ...+++|++|..+++
T Consensus       136 ~~~~---------~GDSGgpl~~~~-----~~vGi~s~~~~~~~-~~~~~~~~pi~~~l~  180 (188)
T 2oua_A          136 VCAE---------PGDSGGSFISGT-----QAQGVTSGGSGNCR-TGGTTFYQEVNPMLN  180 (188)
T ss_dssp             CCCC---------TTCTTCEEEETT-----EEEEEEEEEEEETT-TEEEEEEEESHHHHH
T ss_pred             eecC---------CCCccceEEECC-----EEEEEEeccCCCCC-CCCceEEEEHHHHHH
Confidence            4542         699999999643     49999999864 65 334788998876543

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=98.93  E-value=6e-10  Score=101.33  Aligned_cols=52  Identities=44%  Similarity=0.904  Sum_probs=48.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+....++|+|+||+|||..|+..+.|+|||||+.|++||+++++
T Consensus       180 GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          180 GDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             CCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            5789999998778999999999999999888889999999999999999875

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=98.92  E-value=4.9e-10  Score=104.88  Aligned_cols=52  Identities=35%  Similarity=0.891  Sum_probs=47.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+...+++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       226 GDSGGPL~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          226 GDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             CCTTCEEEEEEGGGEEEEEEEEEECCBCSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             CccCcceEEEcCCCcEEEEEEEEECCCCCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            5789999998667899999999999999988889999999999999999874

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.91  E-value=4.8e-09  Score=104.67  Aligned_cols=145  Identities=18%  Similarity=0.150  Sum_probs=88.0

Q ss_pred             CCceEEEccC--CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        158 RPVNVYSNNE--KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       158 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ...+|.+|++  .||||+|||+.+  ...+.|.+..           ...+..+-+..||.       +||||||++.  
T Consensus        77 ~~GSGfiI~~~~G~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAlLkv~~--  134 (451)
T 3pv2_A           77 SIGSGVIIDPNNGVIITNDHVIRN--ASLITVTLQD-----------GRRLKARLIGGDSE-------TDLAVLKIDA--  134 (451)
T ss_dssp             EEEEEEEEETTTTEEEECHHHHTT--EEEEEEECTT-----------SCEEECEEEEEETT-------TTEEEEECCC--
T ss_pred             eeEEEEEEECCCCEEEEChHHhCC--CCEEEEEEcC-----------CCEEEEEEEecCcC-------CcEEEEEEcC--
Confidence            3589999997  499999999986  4556666532           23456666667774       6999999964  


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEE--ecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecC
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTG--WGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDN  313 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~G--wG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~  313 (422)
                         ..+.++.|........++.++++|  ||.....  ....+....+........    ..     .....+++.    
T Consensus       135 ---~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~~~~--~~~~vt~Givs~~~r~~~----~~-----~~~~~~iqt----  196 (451)
T 3pv2_A          135 ---KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFG--NSQSATFGIVSALKRSDL----NI-----EGVENFIQT----  196 (451)
T ss_dssp             ---SSCCCCCBCCGGGCCTTCEEEEEECCCCC-------CCEEEEEEEEEEC-------------------CCEEE----
T ss_pred             ---cCCceeEecCcccCCCCCEEEEEECCCCccccc--cCCceeEEEEeecccccc----CC-----CCcceEEEE----
Confidence               345667776555566799999999  5532111  112233333333332211    00     012234555    


Q ss_pred             CCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        314 GGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       314 ~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                       ....+.|+|||||+..  +|+  ++||+++...
T Consensus       197 -da~i~~GnSGGPl~n~--~G~--VIGI~t~~~~  225 (451)
T 3pv2_A          197 -DAAINPGNSGGALVNA--KGE--LIGINTAILS  225 (451)
T ss_dssp             -SSCCCGGGTTSEEEET--TCC--EEEEEECCC-
T ss_pred             -ecccCCCCCcCcccCC--CCe--EEEEEeEeec
Confidence             2356899999999953  233  9999998643

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=98.91  E-value=7.5e-10  Score=104.29  Aligned_cols=52  Identities=44%  Similarity=0.972  Sum_probs=47.4

Q ss_pred             CCCCCCccccCC-CCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~-~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+... +++|+|+||+|||..|+..+.|+|||||++|++||+++|+
T Consensus       197 GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  249 (290)
T 1fiw_A          197 GDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIG  249 (290)
T ss_dssp             TCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHHHHHHC
T ss_pred             CCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            478999999753 7899999999999999988899999999999999999874

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=98.91  E-value=8.5e-10  Score=103.88  Aligned_cols=51  Identities=35%  Similarity=0.845  Sum_probs=46.9

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. .+++|+|+||+|||..|+..+.|+|||||++|++||.++|
T Consensus       233 GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i  284 (289)
T 2bdy_A          233 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI  284 (289)
T ss_dssp             TCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHHH
T ss_pred             CCCccceEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            57899999875 3789999999999999998889999999999999999987

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=98.90  E-value=5.9e-10  Score=107.58  Aligned_cols=51  Identities=31%  Similarity=0.704  Sum_probs=45.6

Q ss_pred             CCCCCCcccc-CCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~-~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+. ..+++|+|+||+|||..|+.. .|+|||||++|++||+++|+
T Consensus       294 GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~~-~pgVYTrVs~y~~WI~~~i~  345 (347)
T 4f4o_C          294 GDAGSAFAVHDKDDDTWYAAGILSFDKSCRTA-EYGVYVRVTSILDWIQTTIA  345 (347)
T ss_dssp             TCTTCEEEEEETTTTEEEEEEEEEECCCTTTS-SCEEEEEHHHHHHHHHHHHT
T ss_pred             CCCCcceEEEeCCCCEEEEEEEEEeCCCCCCC-CCeEEEEHHHHHHHHHHHHH
Confidence            4789999986 468999999999999999754 69999999999999999985

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=98.88  E-value=7.7e-10  Score=99.98  Aligned_cols=52  Identities=38%  Similarity=0.730  Sum_probs=48.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+....++|+|+||+|||..|...+.|+|||||++|++||+++|.
T Consensus       171 GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  222 (224)
T 3beu_A          171 GDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR  222 (224)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHT
T ss_pred             CcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            5789999998778999999999999999988899999999999999999874

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=98.88  E-value=1.4e-09  Score=99.97  Aligned_cols=52  Identities=33%  Similarity=0.748  Sum_probs=47.8

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. .+++|+|+||+|||..|+..+.|+|||||++|++||+++|+
T Consensus       196 GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  248 (251)
T 3gov_B          196 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTG  248 (251)
T ss_dssp             TCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHHHC
T ss_pred             CCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHhc
Confidence            57899999874 68899999999999999988899999999999999999874

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=98.88  E-value=1e-09  Score=100.63  Aligned_cols=51  Identities=47%  Similarity=1.042  Sum_probs=46.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||.++|.
T Consensus       192 GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  242 (245)
T 2f9n_A          192 GDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP  242 (245)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHSC
T ss_pred             CCCCCceEEEE-CCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhh
Confidence            57899999876 6899999999999999988899999999999999999874

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=98.87  E-value=1.3e-09  Score=99.51  Aligned_cols=51  Identities=47%  Similarity=1.002  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       186 GDSGgPL~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  236 (238)
T 3bg8_A          186 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (238)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCcceEEEE-CCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHh
Confidence            57899999876 6899999999999999988899999999999999999874

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=98.86  E-value=1.5e-09  Score=100.11  Aligned_cols=51  Identities=35%  Similarity=0.862  Sum_probs=47.0

Q ss_pred             CCCCCCccccCC-CCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~-~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++||.+... +++|+|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus       203 GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  254 (259)
T 3rm2_H          203 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI  254 (259)
T ss_dssp             TCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHHH
T ss_pred             CCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHH
Confidence            578999998753 789999999999999998889999999999999999987

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=98.86  E-value=1.4e-09  Score=99.03  Aligned_cols=51  Identities=47%  Similarity=0.968  Sum_probs=46.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||++|++||+++|.
T Consensus       185 GDsGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          185 GDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             CCCCCeEEEEE-CCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            57899998875 6899999999999999988899999999999999999873

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=98.86  E-value=1e-09  Score=100.13  Aligned_cols=50  Identities=54%  Similarity=1.106  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+...+++|+|+||+|||..|+ .+.|+|||||++|++||+++|
T Consensus       186 GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i  235 (238)
T 1ym0_A          186 GDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTI  235 (238)
T ss_dssp             TTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHH
T ss_pred             CccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHh
Confidence            47899999987789999999999999998 678999999999999999987

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=98.86  E-value=1.4e-09  Score=99.67  Aligned_cols=51  Identities=53%  Similarity=1.049  Sum_probs=47.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|+
T Consensus       196 GDSGgPl~~~~-~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~  246 (247)
T 3mhw_U          196 GDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK  246 (247)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHHHHHTT
T ss_pred             CCCCCeEEEEE-CCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            57899998876 5899999999999999988899999999999999999874

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=98.86  E-value=1.7e-09  Score=99.03  Aligned_cols=51  Identities=41%  Similarity=0.948  Sum_probs=47.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+...+++|+|+||+|||.  .|...+.|+|||||++|++||+++|
T Consensus       186 GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  238 (241)
T 1bru_P          186 GDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI  238 (241)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHH
Confidence            57899999987789999999999997  7988889999999999999999987

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=107.52  Aligned_cols=51  Identities=35%  Similarity=0.845  Sum_probs=47.3

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. .+++|+|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       368 GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~pgVyT~Vs~y~~WI~~~i  419 (424)
T 3nxp_A          368 GDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI  419 (424)
T ss_dssp             SCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCSCEEEEECTTCHHHHHHHH
T ss_pred             CcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            57899999975 4789999999999999999899999999999999999987

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=98.84  E-value=1.8e-09  Score=98.52  Aligned_cols=50  Identities=50%  Similarity=1.021  Sum_probs=46.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus       187 GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          187 GDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TCTTCEEEECT-TSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CcCCCCeEEec-CCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            57899998874 789999999999999998889999999999999999986

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=98.84  E-value=1.5e-09  Score=98.78  Aligned_cols=51  Identities=39%  Similarity=0.683  Sum_probs=46.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||++|++||++++.
T Consensus       176 GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  226 (234)
T 2asu_B          176 GDYGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMR  226 (234)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC-
T ss_pred             CCCCCceEEEE-CCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhh
Confidence            57899999876 6899999999999999988899999999999999999873

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=98.84  E-value=1.4e-09  Score=99.79  Aligned_cols=50  Identities=46%  Similarity=0.940  Sum_probs=46.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       193 GDSGgPL~~~~-~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~  242 (245)
T 1t8o_A          193 GDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL  242 (245)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHH
T ss_pred             ccCcCCEEEEE-CCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            57899999876 789999999999999998889999999999999999987

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=98.83  E-value=2.1e-09  Score=97.91  Aligned_cols=51  Identities=43%  Similarity=0.892  Sum_probs=46.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       183 GDsGgPl~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  233 (235)
T 2wph_S          183 GDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             CCCCCceEEeE-CCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHh
Confidence            57899998864 6899999999999999988899999999999999999874

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=98.83  E-value=2.1e-09  Score=98.88  Aligned_cols=51  Identities=49%  Similarity=1.127  Sum_probs=46.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       201 GDsGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  251 (252)
T 1rtf_B          201 GDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR  251 (252)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             CCCcCceEEEe-CCcEEEEEEEEEcCCCCCCCCCeEEEEHHHHHHHHHHhcC
Confidence            57899998875 6899999999999999888889999999999999999874

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=98.83  E-value=1.6e-09  Score=99.47  Aligned_cols=50  Identities=48%  Similarity=1.078  Sum_probs=45.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. .++|+|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus       195 GDSGgPL~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  244 (247)
T 1ddj_A          195 GDAGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM  244 (247)
T ss_dssp             SCTTCEEEEEC-SSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHH
T ss_pred             CcCcCcEEEEE-CCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHh
Confidence            57899998875 579999999999999998889999999999999999987

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=98.82  E-value=2e-09  Score=99.10  Aligned_cols=51  Identities=39%  Similarity=0.928  Sum_probs=46.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||.++|.
T Consensus       189 GDSGGPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  239 (250)
T 1aut_C          189 GDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (250)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             CCCchheEEEE-CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            57899998865 6899999999999999988899999999999999999874

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=98.82  E-value=2.4e-09  Score=100.43  Aligned_cols=51  Identities=49%  Similarity=1.040  Sum_probs=46.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       224 GDSGgPL~~~~-~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  274 (283)
T 1yc0_A          224 GDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR  274 (283)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             CCCCCceEEEE-CCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHHHHHhc
Confidence            57899999876 6899999999999999988899999999999999999874

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=98.81  E-value=2.5e-09  Score=98.15  Aligned_cols=51  Identities=49%  Similarity=1.040  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||++|++||+++|.
T Consensus       189 GDSGgPL~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  239 (248)
T 2r0l_A          189 GDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR  239 (248)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC
T ss_pred             CccCCeEEEEE-CCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            57899999876 7899999999999999888899999999999999999874

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=98.81  E-value=2.7e-09  Score=97.54  Aligned_cols=51  Identities=47%  Similarity=1.034  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       186 GDsGgPl~~~~-~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~  236 (241)
T 2any_A          186 GDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ  236 (241)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCcEEEEE-CCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence            57899999875 6899999999999999888899999999999999999874

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=98.81  E-value=2.9e-09  Score=97.31  Aligned_cols=51  Identities=39%  Similarity=0.906  Sum_probs=46.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||++|++||+++|.
T Consensus       183 GDsGgPl~~~~-~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  233 (241)
T 2jkh_A          183 GDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (241)
T ss_dssp             TTTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             CcCCCeeEEEE-CCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhc
Confidence            57899998875 5799999999999999988899999999999999999874

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=98.80  E-value=2.7e-09  Score=97.43  Aligned_cols=51  Identities=41%  Similarity=0.989  Sum_probs=46.7

Q ss_pred             CCCCCCcccc-CCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVK-GKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~-~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++||.+. ...++|+|+|++||| ..|+..+.|+|||||++|++||+++|
T Consensus       187 GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i  239 (242)
T 3tvj_B          187 GDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII  239 (242)
T ss_dssp             TCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            5789999987 468899999999999 78998889999999999999999987

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=98.79  E-value=3e-09  Score=97.23  Aligned_cols=51  Identities=33%  Similarity=0.703  Sum_probs=46.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+|++|||..|+..+.|+|||||+.|++||+++|.
T Consensus       177 GDSGgPL~~~~-~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  227 (240)
T 1si5_H          177 GDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL  227 (240)
T ss_dssp             TCTTCEEEEEC-SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCcEEEEE-CCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            57899999876 7899999999999999888899999999999999999874

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=98.79  E-value=2.8e-09  Score=98.54  Aligned_cols=50  Identities=46%  Similarity=0.973  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       192 GDsGgPl~~~~-~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i  241 (261)
T 3gyl_B          192 GDSGGPLSCPV-EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV  241 (261)
T ss_dssp             TTTTCEEEEEE-TTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCeeEEEe-CCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHHH
Confidence            57899999876 689999999999999998889999999999999999987

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=98.78  E-value=3.6e-09  Score=97.49  Aligned_cols=51  Identities=43%  Similarity=0.946  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||+++|.
T Consensus       190 GDSGgPl~~~~-~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  240 (254)
T 2bz6_H          190 GDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             GGTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             ccCCCceEEeE-CCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            47899998875 6899999999999999988899999999999999999874

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=98.78  E-value=2e-09  Score=105.63  Aligned_cols=51  Identities=39%  Similarity=0.963  Sum_probs=46.3

Q ss_pred             CCCCCCcccc--CCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVK--GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~--~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.  ...++|+|+||+|||..|+..+.|+|||||+.|++||.++|
T Consensus       330 GDSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~PgVYT~V~~y~~WI~~~i  382 (394)
T 2b9l_A          330 GDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM  382 (394)
T ss_dssp             SCTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSSCEEEEEGGGGHHHHHHHH
T ss_pred             CCcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHH
Confidence            4789999986  34689999999999999998889999999999999999986

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=98.77  E-value=4.2e-09  Score=96.23  Aligned_cols=51  Identities=41%  Similarity=0.847  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+...+++|+|+||+|||.  .|...+.|+|||||++|++||+++|
T Consensus       185 GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~  237 (240)
T 1fon_A          185 GDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI  237 (240)
T ss_dssp             SCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHH
T ss_pred             CCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHH
Confidence            57899999987788999999999997  7988788999999999999999987

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=98.77  E-value=3.7e-09  Score=103.08  Aligned_cols=51  Identities=47%  Similarity=1.019  Sum_probs=46.4

Q ss_pred             CCCCCCccccCC---CCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGK---DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~---~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+...   .++|+|+||+|||..|+..+.|+|||||+.|++||.++|
T Consensus       306 GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI~~~i  359 (372)
T 1z8g_A          306 GDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI  359 (372)
T ss_dssp             TCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            578999998753   589999999999999998889999999999999999987

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=98.76  E-value=4.8e-09  Score=96.56  Aligned_cols=51  Identities=39%  Similarity=0.866  Sum_probs=46.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||.  .|+..+.|+|||||+.|++||.++|.
T Consensus       198 GDSGgPL~~~~-~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          198 GDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             SCTTCEEEEES-SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCceEEEE-CCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            57899999876 68999999999996  69887889999999999999999874

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=98.75  E-value=4.1e-09  Score=89.30  Aligned_cols=46  Identities=46%  Similarity=0.977  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++||.+.+     .|+||+||| ..|+..+.|+|||||++|++||+++|
T Consensus       102 GDsGgPL~~~g-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~  148 (152)
T 2pka_B          102 GDSGGPLICNG-----MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI  148 (152)
T ss_dssp             TCTTCEEEETT-----EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CccccceEECC-----EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence            47899999863     499999999 78988889999999999999999987

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=98.75  E-value=6.2e-09  Score=95.13  Aligned_cols=50  Identities=38%  Similarity=0.875  Sum_probs=44.9

Q ss_pred             CCCCCCcccc-CCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~-~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+. ...++|+|+||+|||..|..  .|+|||||++|++||+++|.
T Consensus       189 GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~WI~~~~~  239 (242)
T 2qy0_B          189 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEME  239 (242)
T ss_dssp             TCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHHHHhh
Confidence            5789999995 56899999999999999985  48999999999999999874

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.75  E-value=3.8e-09  Score=108.52  Aligned_cols=52  Identities=35%  Similarity=0.854  Sum_probs=40.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+...+++|+|+||+|||..|+..+.|+|||||++|++||+++|+
T Consensus       505 GDSGGPLv~~~~~~~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~~WI~~~i~  556 (565)
T 2xrc_A          505 GDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVG  556 (565)
T ss_dssp             --CCCEEEEECTTCCEEEEEEECC------CCCCEEEEEGGGGHHHHHHHC-
T ss_pred             CccccceEEEeCCCcEEEEEEEeeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            4789999998778899999999999999988899999999999999999874

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=98.74  E-value=5.9e-09  Score=95.24  Aligned_cols=50  Identities=38%  Similarity=0.832  Sum_probs=45.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. +++|+|+|++|||.  .|+..+.|+|||||+.|++||+++|
T Consensus       186 GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  237 (240)
T 1gvk_B          186 GDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI  237 (240)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHH
T ss_pred             CCCcCceEEEE-CCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHH
Confidence            57899998875 68999999999995  7988889999999999999999987

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=98.73  E-value=4.4e-09  Score=98.62  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||. |+..+.|+|||||++|++||+++|.
T Consensus       227 gDSGgPlv~~~-~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~  276 (283)
T 3f1s_B          227 WMDGSVVTREH-RGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  276 (283)
T ss_dssp             BCTTCEEEEEC-SSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCcEEEEE-CCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhh
Confidence            38999998874 68999999999986 7777789999999999999999873

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=98.72  E-value=7.6e-09  Score=94.24  Aligned_cols=50  Identities=38%  Similarity=0.872  Sum_probs=45.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. +++|+|+|++|||.  .|...+.|+|||||++|++||+++|
T Consensus       185 GDSGgPL~~~~-~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          185 GDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             CCCCCeeEEEE-CCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhhC
Confidence            57899999876 68999999999995  7988789999999999999999986

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=98.69  E-value=9.9e-09  Score=98.34  Aligned_cols=49  Identities=39%  Similarity=0.893  Sum_probs=44.2

Q ss_pred             CCCCCCcccc-CCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVK-GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~-~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+. ...++|+|+||+|||..|+.  .|+|||||++|++||+++|
T Consensus       278 GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~~--~~gvyT~V~~y~~WI~~~i  327 (329)
T 1md8_A          278 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEM  327 (329)
T ss_dssp             TTTTCEEEEEETTTTEEEEEEEEEECSSSSS--SCEEEEEGGGTHHHHHHHH
T ss_pred             CccccceEEEECCCCcEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHHHHH
Confidence            4789999985 56789999999999999985  4899999999999999987

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=98.68  E-value=9.4e-09  Score=101.37  Aligned_cols=52  Identities=40%  Similarity=0.978  Sum_probs=45.1

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. ..++|+|+||+||| ..|+..+.|+|||||+.|++||+++|.
T Consensus       348 GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  401 (403)
T 1zjk_A          348 GDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS  401 (403)
T ss_dssp             CSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            57899999874 57899999999999 789988889999999999999999874

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=98.68  E-value=1.3e-08  Score=100.40  Aligned_cols=50  Identities=40%  Similarity=0.825  Sum_probs=44.6

Q ss_pred             CCCCCCc------cccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPL------QVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl------~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||      .+. .+++|+|+||+||| ..|+..+.|+|||||++|++||+++|
T Consensus       316 GDSGGPL~~~~~~~~~-~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~~WI~~~i  372 (408)
T 2xxl_A          316 GDSGGPLQAPAQYLGE-YAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM  372 (408)
T ss_dssp             SCTTCEEEEEECCTTC-SSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGHHHHHHHH
T ss_pred             CcccChhhcCccceEE-ECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            5789999      554 36799999999999 78998889999999999999999986

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.65  E-value=1.6e-07  Score=93.50  Aligned_cols=142  Identities=18%  Similarity=0.192  Sum_probs=86.4

Q ss_pred             CCceEEEccCC--EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        158 RPVNVYSNNEK--VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       158 ~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      ..|+|.+|+++  ||||++||+.+  ...+.|.+..           ...+..+-+..++       ..||||||++.+-
T Consensus        86 ~~GSG~ii~~~~g~IlTn~HVv~~--a~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvlkv~~~~  145 (448)
T 1ky9_A           86 ALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSD-----------GRKFDAKMVGKDP-------RSDIALIQIQNPK  145 (448)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHTT--EEEEEEEETT-----------SCEEEEEEEEEET-------TTTEEEEEESSCC
T ss_pred             cEEEEEEEECCCCEEEEChHHhCC--CCEEEEEECC-----------CCEEEEEEEEEcC-------CCCEEEEEecCCC
Confidence            46999999975  99999999976  4567777642           1233333333333       4799999998642


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCC
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG  315 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~  315 (422)
                          .+.++.|........++.+++.||....     ........+.-..+..    ...     .-...++++     .
T Consensus       146 ----~~~~~~l~~s~~~~~G~~V~aiG~P~g~-----~~tvt~Givs~~~r~~----~~~-----~~~~~~iqt-----d  202 (448)
T 1ky9_A          146 ----NLTAIKMADSDALRVGDYTVAIGNPFGL-----GETVTSGIVSALGRSG----LNA-----ENYENFIQT-----D  202 (448)
T ss_dssp             ----SCCCCCBCCGGGCCTTCEEEEEECTTSS-----SCEEEEEEEEEESSCC--------------CCCCEEE-----S
T ss_pred             ----CCceEEecccccCCCCCEEEEEECCCCC-----CCeEEeEEEeeccccc----cCC-----CCccCEEEE-----c
Confidence                3456666655456679999999975321     1122222333222110    000     012234555     2


Q ss_pred             CCCCcCCCCCCceeecCCCcEEEeeEEeecc
Q psy15052        316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWGI  346 (422)
Q Consensus       316 ~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~  346 (422)
                      ...+.|+|||||+..  +|+  ++||.+...
T Consensus       203 a~i~~GnSGGpl~n~--~G~--vvGI~~~~~  229 (448)
T 1ky9_A          203 AAINRGNAGGALVNL--NGE--LIGINTAIL  229 (448)
T ss_dssp             CCCTTSCCCSEEECT--TSC--EEEEEECSS
T ss_pred             CCCCCCCCCCeeECC--CCE--EEEEEEEee
Confidence            356789999999964  232  999999764

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=98.64  E-value=1.9e-08  Score=91.88  Aligned_cols=49  Identities=41%  Similarity=0.874  Sum_probs=43.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeee----cCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISW----GIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~----g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..  ++|+|+|++||    |..|+..+.|+|||||++|++||+++|
T Consensus       189 GDSGgPL~~~~--~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          189 GDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             TCTTCEEEEES--SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             CcCCccEEEeC--CCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhhhC
Confidence            57899999874  78999999999    467988889999999999999999986

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=98.64  E-value=1.5e-08  Score=92.56  Aligned_cols=49  Identities=35%  Similarity=0.673  Sum_probs=43.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..   .|+|+|++||| ..|+..+.|+|||||+.|++||++++.
T Consensus       180 GDSGgPL~~~~---~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  229 (240)
T 2zgc_A          180 GDSGGPLVCGK---GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG  229 (240)
T ss_dssp             TCTTCEEEETT---TTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHC
T ss_pred             CCccCeeEECC---CCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence            57899999854   38999999999 679888889999999999999999874

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=98.63  E-value=2.1e-08  Score=90.49  Aligned_cols=47  Identities=36%  Similarity=0.733  Sum_probs=42.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..  +  +|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       178 GDSGgPL~~~~--g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          178 GDSGGPIVDSS--N--TLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             TCTTCEEECTT--C--CEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CCCCcceECcC--C--eEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence            57899998852  2  79999999999998889999999999999999986

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=98.62  E-value=1.6e-08  Score=105.16  Aligned_cols=51  Identities=47%  Similarity=1.002  Sum_probs=42.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. +++|+|+||+|||..|+..+.|+|||||+.|++||.++|.
T Consensus       573 GDSGGPLv~~~-~~~~~lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          573 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             CCTTCEEEEEE-TTEEEEEEEEEECCC----CCCCEEEEGGGGHHHHHHTC-
T ss_pred             CCcccceEEEE-CCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            46899998875 6899999999999999988899999999999999999874

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=98.61  E-value=1.6e-08  Score=99.57  Aligned_cols=50  Identities=38%  Similarity=0.886  Sum_probs=44.5

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. ..++|+|+||+|||..|+.  .|+|||||++|++||+++|.
T Consensus       346 GDSGGPl~~~~~~~~~~~l~GivS~g~~C~~--~~~vyt~V~~y~~WI~~~~~  396 (399)
T 1gpz_A          346 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEME  396 (399)
T ss_dssp             SCSSCEEEEEETTTTEEEEEEEECCCTTTTT--TEEEEEEGGGGHHHHHHHTC
T ss_pred             CCCchHeEEEECCCCeEEEEEEEEeCCCcCC--CCeEEEEhHHhHHHHHHHhc
Confidence            57899998863 5789999999999999986  38999999999999999874

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=98.61  E-value=2.3e-08  Score=90.62  Aligned_cols=46  Identities=50%  Similarity=1.114  Sum_probs=41.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     .|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus       179 GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  224 (228)
T 1fxy_A          179 GDSGGPVVCNG-----QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTI  224 (228)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHH
T ss_pred             CccccceEECC-----EEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHH
Confidence            47899998854     69999999999988888999999999999999987

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=98.60  E-value=2.2e-08  Score=96.15  Aligned_cols=48  Identities=40%  Similarity=1.003  Sum_probs=42.5

Q ss_pred             CCCCCCccccC-CCC-ceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKG-KDG-RYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~-~~~-~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.. ..+ +|+|+||+|||..|+.   |+|||||++|++||.++|
T Consensus       275 GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C~~---~~vyt~V~~y~~WI~~~~  324 (333)
T 1elv_A          275 GDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTM  324 (333)
T ss_dssp             TCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EEEEEEGGGGHHHHHHHH
T ss_pred             CcCCCceEEEECCCCcEEEEEEEEeeCCCCCC---CcEEeEHHHHHHHHHHHH
Confidence            57899999974 235 9999999999999984   899999999999999987

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=98.59  E-value=3e-08  Score=89.44  Aligned_cols=46  Identities=48%  Similarity=1.040  Sum_probs=41.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     .|+|++|||..|+..+.|+|||||+.|++||+++|
T Consensus       174 GDSGgPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~  219 (222)
T 1hj8_A          174 GDSGGPVVCNG-----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM  219 (222)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCcccceEECC-----EEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHh
Confidence            57899998853     59999999999998889999999999999999987

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.59  E-value=2.1e-08  Score=95.62  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.+.. .++|+|+||+|||. |+..+.|+|||||+.|++||+++|+
T Consensus       268 gDsGgPl~~~~-~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          268 WMDGSVVTREH-RGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             CCTTCEEEEEE-TTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             CCCCCCEEEec-CCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            48899998874 68999999999985 7777789999999999999999984

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=98.58  E-value=2.6e-08  Score=89.95  Aligned_cols=46  Identities=52%  Similarity=1.137  Sum_probs=41.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     .|+||+|||..|+..+.|+|||||++|++||+++|
T Consensus       175 GDSGgPL~~~~-----~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  220 (223)
T 3mfj_A          175 GDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI  220 (223)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHH
T ss_pred             CCcccceEECC-----EEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHH
Confidence            47899999853     59999999999998888999999999999999987

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=98.58  E-value=3e-08  Score=89.37  Aligned_cols=46  Identities=52%  Similarity=1.137  Sum_probs=42.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..     .|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       175 GDsGgPl~~~~-----~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i  220 (223)
T 4i8h_A          175 GDSGGPVVCSG-----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI  220 (223)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCcEEECC-----EEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            47899998854     69999999999998889999999999999999987

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=98.57  E-value=3.8e-08  Score=89.05  Aligned_cols=46  Identities=50%  Similarity=1.077  Sum_probs=41.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..     +|+|++||| ..|+..+.|+|||||++|++||+++|
T Consensus       177 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  223 (227)
T 2psx_A          177 GDSGGPVVCNG-----SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI  223 (227)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHH
T ss_pred             CCCCcceeeCC-----EEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHH
Confidence            57899998864     699999999 68988889999999999999999987

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=98.57  E-value=3.9e-08  Score=88.65  Aligned_cols=46  Identities=48%  Similarity=0.879  Sum_probs=41.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+++     +|+||+|||..|.. +.|+|||||++|++||+++|.
T Consensus       176 GDSGgPL~~~~-----~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~  221 (222)
T 1eq9_A          176 GDSGGPLVANG-----AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSC
T ss_pred             CCccceEEECC-----EEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhh
Confidence            57899998853     79999999999987 689999999999999999874

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=98.56  E-value=3.8e-08  Score=89.61  Aligned_cols=46  Identities=48%  Similarity=1.058  Sum_probs=41.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..     +|+||+||| ..|+..+.|+|||||++|++||+++|
T Consensus       188 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i  234 (238)
T 1spj_A          188 GDSGGPLMCDG-----VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI  234 (238)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCcEEEcC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHh
Confidence            57899998853     799999999 67988889999999999999999987

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=98.54  E-value=4.3e-08  Score=89.17  Aligned_cols=47  Identities=38%  Similarity=0.862  Sum_probs=42.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..     .|+||+|||.. |+..+.|+|||||++|++||+++|.
T Consensus       182 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  229 (238)
T 4e7n_A          182 GDSGGPLICNG-----QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA  229 (238)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHT
T ss_pred             CCCCcceEECC-----EEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHh
Confidence            57899999865     39999999987 9888899999999999999999874

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=98.53  E-value=4.5e-08  Score=88.29  Aligned_cols=46  Identities=48%  Similarity=1.037  Sum_probs=41.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     +|+|++|||. .|+..+.|+|||||+.|++||+++|
T Consensus       175 GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  221 (223)
T 2bdg_A          175 GDSGGPLICNG-----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV  221 (223)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHH
T ss_pred             CCCCchheEcc-----EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHh
Confidence            57899998864     6999999997 6988889999999999999999987

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=98.53  E-value=4.1e-08  Score=89.54  Aligned_cols=47  Identities=38%  Similarity=0.801  Sum_probs=42.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccC-chhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK-FVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~-~~~Wi~~~~~  422 (422)
                      -++|+||.+++     +|+||+|||..|+..+.|+|||||++ |++||+++|.
T Consensus       188 GDSGGPL~~~~-----~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~~  235 (240)
T 1mza_A          188 GDAGGPLICKG-----VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             TCTTCEEEETT-----EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             CCCCCeeEECC-----EEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhcc
Confidence            57899999853     79999999999998889999999999 9999999874

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=98.53  E-value=4.8e-08  Score=88.60  Aligned_cols=46  Identities=39%  Similarity=0.896  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..+     |+||+|||.. |+..+.|+|||||+.|++||+++|
T Consensus       178 GDSGgPL~~~~~-----l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (234)
T 3s69_A          178 GDSGGPLICNGQ-----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSII  224 (234)
T ss_dssp             TCTTCEEEETTE-----EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCccceEEcCE-----EEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHh
Confidence            578999998653     9999999976 988889999999999999999987

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.52  E-value=1.9e-07  Score=82.54  Aligned_cols=139  Identities=19%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             CCc-eEEEccC---CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECC
Q psy15052        158 RPV-NVYSNNE---KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLET  233 (422)
Q Consensus       158 ~~C-~GtLIs~---~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~  233 (422)
                      ..| .|.++++   .+||||+||+..  ...+.     .+    .    ...-.+... -.|       .+|+||||++.
T Consensus        15 ~~CT~Gf~v~~~~~~~ilTa~Hc~~~--~~~v~-----~~----~----~~~g~vv~~-~~~-------~~D~Avi~i~~   71 (198)
T 2h5c_A           15 SLCSVGFSVTRGATKGFVTAGHCGTV--NATAR-----IG----G----AVVGTFAAR-VFP-------GNDRAWVSLTS   71 (198)
T ss_dssp             EEEECCEEEEETTEEEEEECGGGCCT--TCEEE-----ET----T----EEEEEEEEE-ECS-------BSCEEEEEECT
T ss_pred             CCCCcCEEEecCCeeEEEECcccCCC--CCEEE-----eC----C----cEEEEEEec-CCC-------CCCEEEEEeCC
Confidence            468 4777765   599999999975  22232     11    0    111112111 112       47999999998


Q ss_pred             CcccCCCeee----eecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEE
Q psy15052        234 PVEFAPNIVP----ICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCA  309 (422)
Q Consensus       234 pv~~s~~v~P----icLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa  309 (422)
                      +......+.+    +.+-.......++.+...|.-         .-+....+..++...   .+.. +....+...+.|+
T Consensus        72 ~~~~~~~v~~~g~~~~v~g~~~~~vG~~V~~~G~~---------tg~t~G~V~~~~~~~---~~~~-g~~~~~i~t~~~~  138 (198)
T 2h5c_A           72 AQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRT---------TGYQCGTITAKNVTA---NYAE-GAVRGLTQGNACM  138 (198)
T ss_dssp             TSEEEEEEEETTEEEECCBCCCCCTTCEEEEEETT---------TEEEEEEEEEEEEEE---EETT-EEEEEEEEECSCC
T ss_pred             CCccCceEecCCceEEecCcccCCCCCeEEEeecC---------cceEEEEEEeeeeEE---EeCC-CeEeeeEEecccC
Confidence            6544333332    112122234456666666531         113333333332210   0100 0000011112222


Q ss_pred             eecCCCCCCCcCCCCCCce-eecCCCcEEEeeEEeecc
Q psy15052        310 GFDNGGRDSCQGDSGGPLQ-VKGKDGRYFLAGIISWGI  346 (422)
Q Consensus       310 ~~~~~~~~~C~GDSGgPLv-~~~~~~~~~lvGV~S~g~  346 (422)
                               -+|||||||+ ..+     .++||+|++.
T Consensus       139 ---------~~GDSGGPl~~~~g-----~~vGI~s~~~  162 (198)
T 2h5c_A          139 ---------GRGDSGGSWITSAG-----QAQGVMSGGN  162 (198)
T ss_dssp             ---------BTTCTTCEEECTTC-----BEEEEEEEEC
T ss_pred             ---------CCCcceeEEEeeCC-----EEEEEEEeec
Confidence                     2799999999 432     3999999974

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=98.52  E-value=3.4e-08  Score=104.67  Aligned_cols=50  Identities=50%  Similarity=1.085  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||++.. .++|+|+||+|||..|+..+.|+|||||+.|++||+++|
T Consensus       739 GDSGGPLv~~~-~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~~i  788 (791)
T 4dur_A          739 GDSGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM  788 (791)
T ss_dssp             SCTTCEEEEEE-TTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHHHHH
T ss_pred             CCcccceEEEe-CCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            47899998876 579999999999999999889999999999999999987

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=98.52  E-value=5.3e-08  Score=88.62  Aligned_cols=46  Identities=41%  Similarity=0.900  Sum_probs=41.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     +|+|++||| ..|+..+.|+|||||+.|++||+++|
T Consensus       187 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  233 (237)
T 1ao5_A          187 DDSGGPLICDG-----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM  233 (237)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHH
T ss_pred             CCCcceEEECC-----EEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence            57899999843     699999999 78998889999999999999999987

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=98.52  E-value=6.2e-08  Score=88.18  Aligned_cols=46  Identities=46%  Similarity=0.963  Sum_probs=41.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     +|+|++|||. .|+..+.|+|||||+.|++||+++|
T Consensus       187 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  233 (237)
T 2zch_P          187 GDSGGPLVCNG-----VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI  233 (237)
T ss_dssp             TCTTCEEESSS-----SEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCccCeEEECC-----EEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence            47899998853     6999999998 6988889999999999999999987

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=98.51  E-value=6.6e-08  Score=87.20  Aligned_cols=47  Identities=43%  Similarity=0.988  Sum_probs=41.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..     .|+|++||| ..|...+.|+|||||+.|++||+++|.
T Consensus       174 GDsGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  221 (223)
T 1lo6_A          174 GDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (223)
T ss_dssp             TTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ccCCCcEEeCC-----EEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            57899998853     599999999 689888899999999999999999874

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=98.50  E-value=6.1e-08  Score=88.42  Aligned_cols=46  Identities=48%  Similarity=0.950  Sum_probs=41.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     +|+||+||| ..|+..+.|+|||||+.|++||+++|
T Consensus       190 GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (240)
T 1sgf_A          190 HDSGGPLICDG-----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM  236 (240)
T ss_dssp             CCTTCEEEETT-----EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHH
T ss_pred             CCCcCcEEEcc-----EEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHH
Confidence            57899999843     699999999 66988889999999999999999987

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=98.50  E-value=5.2e-08  Score=88.32  Aligned_cols=46  Identities=28%  Similarity=0.523  Sum_probs=41.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+...     |+||+|||..|.. +.|+|||||++|++||+++|.
T Consensus       184 GDsGgPl~~~~~-----l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~  229 (235)
T 3h7t_A          184 GDAGDPAVQNGT-----LVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIIS  229 (235)
T ss_dssp             TCTTCEEEETTE-----EEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCceeeCCe-----EEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHh
Confidence            578999998543     9999999999987 789999999999999999874

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=98.50  E-value=7.6e-08  Score=86.87  Aligned_cols=46  Identities=52%  Similarity=1.110  Sum_probs=41.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     .|+|++||| ..|...+.|+|||||+.|++||+++|
T Consensus       174 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  220 (224)
T 2qxi_A          174 GDSGGPLVCRG-----TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM  220 (224)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHH
T ss_pred             CCccccEEECC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            57899999843     699999999 68988889999999999999999987

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=98.50  E-value=7.5e-08  Score=87.06  Aligned_cols=46  Identities=46%  Similarity=0.898  Sum_probs=40.1

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .-++++||.+..     +|+|++|||  |...+.|+|||||+.|++||+++|.
T Consensus       179 ~GDsGgPL~~~~-----~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~  224 (227)
T 1euf_A          179 SGDSGGPLVCNG-----VAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMR  224 (227)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC
T ss_pred             ccCCCCceEECC-----EEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHh
Confidence            357899999853     799999999  7766789999999999999999874

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=98.49  E-value=5.3e-08  Score=87.97  Aligned_cols=47  Identities=47%  Similarity=1.015  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.+     .|+||+||| ..|+..+.|+|||||+.|++||+++|.
T Consensus       178 GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          178 GDSGGPLVCDG-----MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCchheECC-----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            57899998853     699999999 679888889999999999999999874

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=98.48  E-value=8e-08  Score=87.12  Aligned_cols=46  Identities=39%  Similarity=0.856  Sum_probs=41.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     .|+|++||| ..|+..+.|+|||||+.|++||+++|
T Consensus       175 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  221 (231)
T 2aiq_A          175 GDSGGPLICNG-----QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSII  221 (231)
T ss_dssp             TCTTCEEEETT-----EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CcCCCcEEECC-----EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            57899999853     699999999 77988889999999999999999986

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=98.48  E-value=7.5e-08  Score=87.35  Aligned_cols=46  Identities=35%  Similarity=0.777  Sum_probs=41.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+...     |+|++|||.. |+..+.|+|||||+.|++||+++|
T Consensus       178 GDSGgPl~~~~~-----l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i  224 (234)
T 3s9c_A          178 GDSGGPLICNGE-----MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII  224 (234)
T ss_dssp             TCTTCEEEETTE-----EEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCeEEEeCC-----cEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHH
Confidence            578999998653     9999999987 988889999999999999999987

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=98.48  E-value=5.4e-08  Score=88.56  Aligned_cols=46  Identities=41%  Similarity=0.780  Sum_probs=41.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     +|+||+|||. .|+..+.|+|||||+.|++||+++|
T Consensus       187 GDSGgPL~~~~-----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  233 (237)
T 1gvz_A          187 GDSGGALICDG-----VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI  233 (237)
T ss_dssp             GGTTCEEEETT-----EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHH
T ss_pred             CCccCcEeeCC-----EEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHH
Confidence            47899999843     6999999998 7988888999999999999999987

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=98.47  E-value=8.6e-08  Score=87.12  Aligned_cols=46  Identities=41%  Similarity=0.853  Sum_probs=41.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+++     +|+|++||| ..|+..+.|+|||||+.|++||+++|
T Consensus       185 GDSGgPL~~~~-----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  231 (235)
T 1ton_A          185 GDSGGPLICDG-----VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM  231 (235)
T ss_dssp             TCTTCEEEETT-----EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCccccEECC-----EEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            47899998843     699999999 66998889999999999999999987

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=98.46  E-value=9e-08  Score=86.94  Aligned_cols=47  Identities=38%  Similarity=0.851  Sum_probs=41.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEcc-CchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~-~~~~Wi~~~~~  422 (422)
                      -++|+||.+++     +|+||+|||.  .|...+.|+|||||+ +|++||.++|.
T Consensus       182 GDSGgPL~~~~-----~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~  231 (234)
T 1orf_A          182 GDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK  231 (234)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             CCCCCeEEECC-----EEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHH
Confidence            57899999853     7999999998  798888999999999 99999999874

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=98.45  E-value=9.5e-08  Score=86.37  Aligned_cols=44  Identities=43%  Similarity=0.864  Sum_probs=39.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     +|+||+|||  |...+.|+|||||+.|++||+++|
T Consensus       181 GDSGgPL~~~~-----~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~  224 (227)
T 1iau_A          181 GDSGGPLVCNK-----VAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTM  224 (227)
T ss_dssp             TCTTSEEEETT-----EEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHH
T ss_pred             cCCCchheEee-----EEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHH
Confidence            57899999853     799999999  776678999999999999999987

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=98.45  E-value=7.9e-08  Score=86.77  Aligned_cols=46  Identities=28%  Similarity=0.595  Sum_probs=41.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.+..     .|+||+|||..|.. +.|+|||||++|++||+++|.
T Consensus       181 GDsGgPl~~~~-----~l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~  226 (228)
T 3h7o_A          181 GDAGDPTVQQD-----TLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIK  226 (228)
T ss_dssp             GGTTCEEEETT-----EEEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHT
T ss_pred             CCCCCcceecC-----eEEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhh
Confidence            47899998854     39999999999887 789999999999999999874

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=98.44  E-value=1.2e-07  Score=85.03  Aligned_cols=46  Identities=37%  Similarity=0.793  Sum_probs=40.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeee--cCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~--g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.++.     +|+|++||  |. |...+.|+|||||+.|++||+++|.
T Consensus       171 GDSGgPl~~~~-----~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          171 GDSGSPLVCNG-----LIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TCTTCEEEETT-----EEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CcCCCceEEcc-----EEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            57899999854     79999999  76 9888889999999999999999874

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=98.43  E-value=1.3e-07  Score=85.42  Aligned_cols=45  Identities=47%  Similarity=0.757  Sum_probs=40.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.++.     .|+||+|||..|+..  |+|||||+.|++||+++|.
T Consensus       182 gDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          182 EDSGGPLVCKR-----AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             TTTTCEEEETT-----EEEEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHT
T ss_pred             cCCccceEEec-----CCcEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHh
Confidence            46899999864     699999999998775  9999999999999999874

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=98.42  E-value=1.1e-07  Score=96.32  Aligned_cols=51  Identities=35%  Similarity=0.890  Sum_probs=41.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--ccc----CCCCCc----eEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCA----EANLPG----VCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~----~~~~~~----v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.|.. .++|+|+||+|||.  .|+    ..+.|+    |||||++|++||.++|.
T Consensus       430 GDSGGPL~~~~-~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~  490 (497)
T 1rrk_A          430 GDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  490 (497)
T ss_dssp             GGTTCEEEEEE-TTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCeeEEEe-CCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhC
Confidence            47899999876 68999999999998  698    456785    99999999999999874

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=98.41  E-value=1.5e-07  Score=85.00  Aligned_cols=47  Identities=34%  Similarity=0.842  Sum_probs=41.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.+     +|+|++|||. .|...+.|+|||||+.|++||+++|.
T Consensus       181 GDsGgPL~~~~-----~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          181 GDAGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TCTTCEEEETT-----EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCcccEEECC-----EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence            57899998853     7999999998 79887899999999999999999874

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=98.40  E-value=1.2e-07  Score=85.36  Aligned_cols=45  Identities=44%  Similarity=0.897  Sum_probs=40.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..     +|+|++|||..|+..  |+|||||+.|++||+++|.
T Consensus       180 GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          180 GDSGGPLLCAG-----VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTTTCEEEETT-----EEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEcc-----eeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            57899998854     799999999998776  9999999999999999874

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=98.39  E-value=1.1e-07  Score=85.77  Aligned_cols=44  Identities=48%  Similarity=0.899  Sum_probs=39.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+..     +|+|++|||..|+..  |+|||||+.|++||+++|
T Consensus       180 GDsGgPl~~~~-----~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i  223 (226)
T 4ag1_A          180 GDSGGPLLCAG-----VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQIL  223 (226)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCceEEcC-----EEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHH
Confidence            57899998843     799999999998876  999999999999999987

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=98.38  E-value=2.1e-07  Score=84.22  Aligned_cols=48  Identities=31%  Similarity=0.771  Sum_probs=41.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..   .++|+|++|||.  .| ..+.|+|||||++|++||+++++
T Consensus       178 GDSGgPl~~~~---~~~l~Gi~S~g~~~~C-~~~~p~vyt~V~~~~~WI~~~~~  227 (230)
T 2hlc_A          178 GDSGGPFVLSD---KNLLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             TCTTCEEEEGG---GTEEEEEEEECCTTCT-TSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCeeEECc---CCEEEEEEEEeCCCCC-CCCCCCEEEEhHHhHHHHHHhhC
Confidence            57899998865   358999999987  56 56789999999999999999874

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=98.33  E-value=2.9e-07  Score=82.97  Aligned_cols=44  Identities=32%  Similarity=0.703  Sum_probs=39.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeec-CcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g-~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.+.+     +|+|++||| ..|...  |+|||||+.|++||+++|
T Consensus       173 GDSGgPl~~~g-----~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~  217 (225)
T 1a7s_A          173 GDGGTPLVCEG-----LAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVL  217 (225)
T ss_dssp             TCTTCEEEETT-----EEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHH
T ss_pred             CCCcchheeCC-----EEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHh
Confidence            57899999863     899999999 668765  999999999999999986

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=98.32  E-value=3e-07  Score=83.03  Aligned_cols=46  Identities=41%  Similarity=0.834  Sum_probs=39.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.++     ++|+|++|||.  .|. .+.|+|||||+.|++||+++++
T Consensus       176 GDSGgPL~~~-----~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~  223 (226)
T 1azz_A          176 GDSGGPLNYN-----GLTYGITSFGAAAGCE-AGYPDAFTRVTYFLDWIQTQTG  223 (226)
T ss_dssp             TCTTCEEEET-----TEEEEEEEEEETTCTT-SCCCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCcceEEC-----CEEEEEEEEECCCCCC-CCCCCEEEEHHHHHHHHHHHhC
Confidence            5789999853     27999999997  565 4789999999999999999874

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=98.32  E-value=2.8e-07  Score=93.56  Aligned_cols=51  Identities=27%  Similarity=0.693  Sum_probs=42.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccC---------CCCC------ceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAE---------ANLP------GVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~---------~~~~------~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.|.. .++|+|+||+|||.  .|+.         ...|      +|||||++|++||.++|+
T Consensus       434 GDSGGPL~~~~-~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~  501 (509)
T 2odp_A          434 GESGGAVFLER-RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG  501 (509)
T ss_dssp             GGTTCEEEEEE-TTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHT
T ss_pred             CCccCceEEEE-CCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhC
Confidence            47899999876 58999999999997  5962         3445      599999999999999874

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=98.32  E-value=3.6e-07  Score=82.12  Aligned_cols=47  Identities=45%  Similarity=0.872  Sum_probs=40.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+++     +|+|++||+. +|...+.|+|||||++|++||+++|.
T Consensus       174 GDSGgPL~~~~-----~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          174 GDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCeeEECC-----EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence            57899999843     7999999954 38887889999999999999999874

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=98.30  E-value=3e-07  Score=97.72  Aligned_cols=51  Identities=33%  Similarity=0.801  Sum_probs=43.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC--cccC---CCCC-----ceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI--GCAE---ANLP-----GVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~---~~~~-----~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. .++|+|+||+|||.  .|..   .+.|     +|||||+.|++||+++|+
T Consensus       672 GDSGGPL~~~~-~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~  732 (741)
T 3hrz_D          672 GDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  732 (741)
T ss_dssp             GGTTCEEEEEE-TTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTT
T ss_pred             CcccCceEEee-CCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhc
Confidence            36899998876 68999999999997  7987   6788     999999999999999984

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.29  E-value=1.2e-05  Score=68.37  Aligned_cols=80  Identities=10%  Similarity=-0.037  Sum_probs=49.9

Q ss_pred             CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCc
Q psy15052        156 LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPV  235 (422)
Q Consensus       156 ~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv  235 (422)
                      .....+|.+| +.+|||++||+.+  ...+.|+++            ...+..+ ++..|       ..||||||++.+.
T Consensus        19 ~~~~GSGfii-~g~IlTn~HVV~~--~~~i~V~~d------------g~~~~a~-vv~d~-------~~DlAlLkv~~~~   75 (163)
T 2w5e_A           19 PEGKGTGFFS-GNDIVTAAHVVGN--NTFVNVCYE------------GLMYEAK-VRYMP-------EKDIAFITCPGDL   75 (163)
T ss_dssp             TTEEEEEEEE-TTEEEEEHHHHTT--CSEEEEEET------------TEEEEEE-EEECC-------SSSEEEEECCTTC
T ss_pred             CceeEEEEEE-CCEEEecHHHhCC--CceEEEEEC------------CEEEEEE-EEEEC-------CCCEEEEEecCCC
Confidence            3556899999 8999999999976  345666651            1223332 33222       4899999998643


Q ss_pred             ccCCCeeeeecCCCCCCCCCCeEEEEEec
Q psy15052        236 EFAPNIVPICLPGSDDLLIGENATVTGWG  264 (422)
Q Consensus       236 ~~s~~v~PicLp~~~~~~~~~~~~v~GwG  264 (422)
                         ..+.|+.|....   ......+.|+.
T Consensus        76 ---~~~~~l~l~~~~---~~~~v~~~G~p   98 (163)
T 2w5e_A           76 ---HPTARLKLSKNP---DYSCVTVMAYV   98 (163)
T ss_dssp             ---CCSCCCCBCSSC---CTTEEEEEEEE
T ss_pred             ---CCcceEEcCCCC---CCCEEEEEEeC
Confidence               133445554332   23567777765

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=98.28  E-value=4.9e-07  Score=81.45  Aligned_cols=44  Identities=45%  Similarity=0.868  Sum_probs=37.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++|+||.++.     +|+|++|||..|  ...|+|||||+.|++||+++|
T Consensus       179 GDSGgPL~~~~-----~l~Gi~S~g~~~--~~~p~vyt~V~~~~~WI~~~~  222 (224)
T 1cgh_A          179 GDSGGPLLCNN-----VAHGIVSYGKSS--GVPPEVFTRVSSFLPWIRTTM  222 (224)
T ss_dssp             TCTTCEEEETT-----EEEEEEEECCTT--CCSCEEEEEGGGGHHHHHHHH
T ss_pred             CCCccceEEcc-----EEEEEEEEECCC--CCCCeEEEEHHHhHHHHHHHh
Confidence            57899998853     799999999833  345999999999999999987

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=98.20  E-value=8.9e-07  Score=77.11  Aligned_cols=169  Identities=13%  Similarity=-0.032  Sum_probs=89.2

Q ss_pred             EEEEEecCCCCceEEEc---cCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCc
Q psy15052        149 VKPLKESLGRPVNVYSN---NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD  225 (422)
Q Consensus       149 ~v~i~~~~~~~C~GtLI---s~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nD  225 (422)
                      ++.|+..+.+.|.|+.+   ..+++||||||+.... ..+...-......       ...+++.       |.......|
T Consensus        18 vv~l~~~d~h~G~g~~V~~~G~~~LlTA~Hv~~~~~-~~~~~~k~g~~ip-------~~~~~~~-------~~~~d~~~D   82 (191)
T 1zyo_A           18 LVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSM-RPTGLAKAGKQVS-------VEDWEIS-------MSSSDKMLD   82 (191)
T ss_dssp             EEEEEETTEEEEEEEEEEC--CEEEEECHHHHTSSS-CCCEEEETTEEEE-------CCSCEEE-------EEECCTTTC
T ss_pred             EEEEEeCCeEEEEEEEEEECCCcEEEEChhhCcCCc-ceeeecCCCCEEE-------cccceee-------EccCCCCCc
Confidence            78888777778999998   6689999999986522 1111110110000       0011111       211222489


Q ss_pred             eEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCc
Q psy15052        226 LALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDI  305 (422)
Q Consensus       226 IALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~  305 (422)
                      +|||++...+.-.-.++++-+-.   ...+..+.+.|+.....       +... ..+..               .....
T Consensus        83 ~all~vp~~~~s~lg~~~a~~~~---~~~~~~vt~yg~~~~~~-------~~s~-~g~~~---------------~~~~~  136 (191)
T 1zyo_A           83 FAIVRVPTHVWSKLGVKSTPLVC---PSSKDVITCYGGSSSDC-------LMSG-VGSSS---------------TSEFT  136 (191)
T ss_dssp             EEEEECCHHHHHHHTCCCCCBCC---CCSCEEEEEEEESSTTS-------EEEE-EEEEE---------------ECSST
T ss_pred             EEEEEcCCChhhhcCcceeEeec---CCCCccEEEEeecCCCC-------Eeec-cccee---------------eccCC
Confidence            99999987553111233333311   12367788887753111       1111 00000               00111


Q ss_pred             eEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        306 FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       306 ~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      ++-..    ...+-.|+||+|++..+.     +|||...+..-   +.-..-++++.+.+||.+.
T Consensus       137 ~~~~~----~~~T~~G~SGsP~~ng~~-----IVGvh~G~~~~---~~~N~a~n~~~~~~~~~~~  189 (191)
T 1zyo_A          137 WKLTH----TCPTAAGWSGTPLYSSRG-----VVGMHVGFEEI---GKLNRGVNMFYVANYLLRS  189 (191)
T ss_dssp             TEEEE----CCCCCTTCTTCEEECSSC-----EEEEEEEEEET---TTEEEEECHHHHHHHTCCC
T ss_pred             cEEEE----EcCCCCCCCCCcEEcCCe-----EEEEEeCcccC---CceeeeeehHHHhhhhhhc
Confidence            11111    123357999999998643     88999875432   2234578889999987653

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=98.15  E-value=3.2e-07  Score=82.06  Aligned_cols=46  Identities=17%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..    ++|+||+|||..|+  ..|+|||||++|++||+++++
T Consensus       169 GDSGgPl~~~~----g~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          169 GNSGSAMLDQN----QQIVGVHNAGYSNG--TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             TCTTCEEECTT----SCEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHHT
T ss_pred             CCCCCeeEccC----CeEEEEEecccCCC--ccCceeEechHHHHHHHHHhc
Confidence            47899998853    28999999999887  579999999999999999874

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=98.06  E-value=5.6e-07  Score=78.60  Aligned_cols=47  Identities=26%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .-++++||.+..     .++||+|||..|+..+.|+||+||+.|++||..+|
T Consensus       138 ~GDSGGPlv~~~-----~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          138 PGDSGGPLYSGT-----RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             CCCccceEEECC-----EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence            457999998752     69999999988877778999999999999999875

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.89  E-value=9.5e-05  Score=74.62  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             ceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCC
Q psy15052        160 VNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAP  239 (422)
Q Consensus       160 C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~  239 (422)
                      -+|.+|++.+|||.+|.+.+  ...+.|.+-.     ..     ..+..+-+...|       ..||||||++.+-. ..
T Consensus        76 GSGfiI~dG~IlTN~HVV~~--a~~i~V~~~~-----dg-----~~~~A~vv~~D~-------~~DLAvLkv~~~~~-~~  135 (539)
T 4fln_A           76 GSAFMIGDGKLLTNAHCVEH--DTQVKVKRRG-----DD-----RKYVAKVLVRGV-------DCDIALLSVESEDF-WK  135 (539)
T ss_dssp             EEEEEEETTEEEECGGGGTT--EEEEEEECTT-----CC-----CCEEEEEEEEET-------TTTEEEEEECCSSS-ST
T ss_pred             EEEEEEECCEEEEChHHcCC--CCeEEEEEcc-----CC-----EEEEEEEEEECC-------CCCEEEEEEeCCcC-Cc
Confidence            47899999999999999975  4556665410     11     122233233333       37999999986422 22


Q ss_pred             CeeeeecCCCCCCCCCCeEEEEEec
Q psy15052        240 NIVPICLPGSDDLLIGENATVTGWG  264 (422)
Q Consensus       240 ~v~PicLp~~~~~~~~~~~~v~GwG  264 (422)
                      .+.|+.+..  ....++.+++.|+-
T Consensus       136 ~~~pl~~g~--~~~vGd~V~aiG~P  158 (539)
T 4fln_A          136 GAEPLRLGH--LPRLQDSVTVVGYP  158 (539)
T ss_dssp             TCCCCCBCC--CCCTTCEEEEEECC
T ss_pred             CCceeecCC--cCcCCCeEEEEEcC
Confidence            344555432  23458889999875

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=97.87  E-value=3.5e-05  Score=81.86  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=53.2

Q ss_pred             eEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCC
Q psy15052        161 NVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN  240 (422)
Q Consensus       161 ~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~  240 (422)
                      .+|||+|+||+|+|| ...+    -.|.+|.      .+    ..++|   +.|++|.    ..|+++.||.+.|.   .
T Consensus        59 ~aTLI~pqYiVSvaH-n~gy----~~v~fG~------~~----n~Y~i---V~rnn~~----~~Dy~~pRL~K~VT---E  113 (1048)
T 1wxr_A           59 VATLINPQYIASVKH-NGGY----TNVSFGD------GE----NRYNI---VDRNNAP----SLDFHAPRLDKLVT---E  113 (1048)
T ss_dssp             CCEEEETTEEEBCTT-CCSC----CEECCTT------SC----CCEEE---EECCBCS----SSSCBCCEESSCCC---S
T ss_pred             eEEEEcCcEEEEeee-cCCC----ceEEeCC------Cc----ceEEE---EeeCCCC----CCCeeeeecccccc---c
Confidence            468999999999999 3222    2344453      11    12333   7888875    25999999999886   5


Q ss_pred             eeeeecCCCC-------CCCCCCeEEEEEeccc
Q psy15052        241 IVPICLPGSD-------DLLIGENATVTGWGRL  266 (422)
Q Consensus       241 v~PicLp~~~-------~~~~~~~~~v~GwG~~  266 (422)
                      +.||.+....       +.......+.+|=|..
T Consensus       114 vaP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q  146 (1048)
T 1wxr_A          114 VAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQ  146 (1048)
T ss_dssp             SCCCCBCSSCSCTTGGGCTTTCCCEEEEECSCE
T ss_pred             ccceeeccccCccccccccccCceEEEECCcEE
Confidence            7788776543       1223555677887765

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=96.91  E-value=0.00015  Score=62.71  Aligned_cols=46  Identities=24%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhh
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      .-+|++||.+..     .++||+|||..|+..+.|++|++|+.|++|+.=+
T Consensus       134 ~GDSGGPlv~~~-----~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~v~  179 (181)
T 2sga_A          134 PGDSGGSLFAGS-----TALGLTSGGSGNCRTGGTTFYQPVTEALSAYGAT  179 (181)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTEE
T ss_pred             CCCCCCEEEECC-----EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcCcE
Confidence            357899998653     5999999998744445799999999999998643

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=96.82  E-value=0.00036  Score=64.29  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCC--CCCceEEEccCchh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEA--NLPGVCTRISKFVP  415 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~--~~~~v~~~v~~~~~  415 (422)
                      -++++||.+.    .+.|+||+|||. .|+..  +.|+|||||+.|..
T Consensus       192 gdsGgPl~~~----~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          192 GSSGSPIYSP----EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             TCTTCEEECT----TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             CcccCCcEee----CCEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            5789999763    256999999997 58876  38999999987653

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=96.78  E-value=0.004  Score=52.90  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=22.0

Q ss_pred             CCceEEEccCC-EEeecccCcCCCCCceEEEEE
Q psy15052        158 RPVNVYSNNEK-VDDFSTESVNSLLTSQIKIRV  189 (422)
Q Consensus       158 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~l  189 (422)
                      ..++|..|+.+ +||||+|=+.+  .+...|++
T Consensus        15 G~GsgF~i~~~g~vVTA~HVv~~--~~~~~V~~   45 (198)
T 1mbm_A           15 GTGSVWTRNNEVVVLTASHVVGR--ANMATLKI   45 (198)
T ss_dssp             EEEEEEEETTEEEEEEEHHHHCT--TCEEEEEE
T ss_pred             CccceEEECCCeEEEEeeeEEcc--CceEEEEE
Confidence            45788889865 59999999965  34556665

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=96.69  E-value=0.00041  Score=60.88  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCccc-CCCCCce-EEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGV-CTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~-~~~~~~v-~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+..    +.++||+|||..|+ .....+| |+  +.|++||+++|.
T Consensus       152 GdSGGPl~~~~----g~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          152 GNSGSPVLNSK----HELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             TCTTCEEECTT----SCEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             CCccCeEECcC----CEEEEEEeccccCCCCccceeeecH--HHHHHHHHhhcc
Confidence            46899997632    36999999998874 2222366 66  999999999874

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=96.28  E-value=0.00094  Score=61.78  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.    .+.|+||+|||..|+..  +++| .++.|++||+++|.
T Consensus       167 GdSGGPLv~~----~g~lvGIvS~G~~~~~~--~~~~-~~~~~~~wI~~~i~  211 (274)
T 2o8l_A          167 GNSGSPVFNE----KNEVIGIHWGGVPNEFN--GAVF-INENVRNFLKQNIE  211 (274)
T ss_dssp             TCTTCEEECT----TSCEEEEEEEEETTTEE--EEEE-CCHHHHHHHHHHCT
T ss_pred             CCchhheecc----CCeEEEEEeCcccCCCC--ceEE-ecHHHHHHHHHHHh
Confidence            4689999753    24699999999988753  5555 47999999998763

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=96.21  E-value=0.00091  Score=58.64  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=33.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc---ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG---CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~---~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.    .+.++||+|||..   |...+.+.+|+  +.|++||+++|.
T Consensus       155 GdSGGPl~~~----~g~lvGI~s~g~~~~~~~~~~~~~~~~--~~~~~wI~~~~~  203 (204)
T 2vid_A          155 GNSGSPVLNS----NNELVGIHFASDVKNDDNRNAYGVYFT--PEIKKFIAENID  203 (204)
T ss_dssp             GGTTCEEECT----TSCEEEEEEEECC---CCCCEEEECCC--HHHHHHHHHHSC
T ss_pred             CCccCcEECC----CCeEEEEEecCccCCCcccccceeEeC--HHHHHHHHhhcC
Confidence            4689999753    2469999999974   55443434455  889999999874

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=95.91  E-value=0.0024  Score=58.74  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.    .+.|+||+|||..|+..  +++|+ ++.|++||+++|.
T Consensus       167 GdSGGPLv~~----~g~lvGIvS~G~~~~~~--~~~~~-~~~~~~wI~~~i~  211 (268)
T 1wcz_A          167 GNSGSPVFNE----KNEVIGIHWGGVPNEFN--GAVFI-NENVRNFLKQNIE  211 (268)
T ss_dssp             TCTTCEEECT----TSCEEEEEEEEETTTEE--EEEEC-CHHHHHHHHHHCT
T ss_pred             CCccCeEEcc----CCEEEEEEeCCccCCcc--eeEEc-CHHHHHHHHHHHH
Confidence            4689999753    24699999999988752  55554 7999999998763

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=94.35  E-value=0.085  Score=45.55  Aligned_cols=31  Identities=6%  Similarity=-0.082  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCceEEEcc-CCEEeecccCcCC
Q psy15052        149 VKPLKESLGRPVNVYSNN-EKVDDFSTESVNS  179 (422)
Q Consensus       149 ~v~i~~~~~~~C~GtLIs-~~~VLTAAhCv~~  179 (422)
                      .|.+.-......++..|+ ..+||||+|=+.+
T Consensus        21 ~v~V~G~~~GsGt~F~i~g~~~VvTA~HVVg~   52 (213)
T 3fan_A           21 TVNVVGSSMGSGGVFTIDGKIKCVTAAHVLTG   52 (213)
T ss_dssp             EEEEESSSEEEEEEEEETTEEEEEEEGGGSBT
T ss_pred             eEEEeecCCCceEEEEECCcEEEEEeccEeCC
Confidence            355543323345666677 4489999999976

>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta}

Probab=93.99  E-value=0.007  Score=42.70  Aligned_cols=41  Identities=22%  Similarity=0.509  Sum_probs=29.2

Q ss_pred             CCceee-CCceeeeeeeeeeccC-----CCc---------eecccc-CCeEEEEecC
Q psy15052         26 PKPCSV-NSVEGRCMFVWECINT-----DGH---------HLGMCV-DTFMFGSCCS   66 (422)
Q Consensus        26 ~~~C~~-~~~~g~C~~~~~C~~~-----~g~---------~~~~C~-~~~~~~~CC~   66 (422)
                      .|.|++ +++.|.|+.+.+|+..     ...         ..+.|| ++..+.||||
T Consensus        10 ~~~C~tp~g~~G~CV~i~~C~~l~~il~~~~~t~~~~~fLr~s~CG~~~~~plVCCP   66 (66)
T 2ikd_A           10 GQACTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCCP   66 (66)
T ss_dssp             -CEECCTTCSCEEEECTTTCHHHHHHHHHSCCCHHHHHHHHHTCSCCCSSSCCEEEC
T ss_pred             cccCcCCCCCCEEEeeHHHCHHHHHHHhcCCCCHHHHHHHHHccCCCCCCceeeeCc
Confidence            478999 8899999999999821     111         124795 5556779996

>2ike_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta}

Probab=92.71  E-value=0.026  Score=37.98  Aligned_cols=39  Identities=18%  Similarity=0.554  Sum_probs=27.7

Q ss_pred             ceee-CCceeeeeeeeeeccC----C-Cc--------eeccccCCeEEEEecC
Q psy15052         28 PCSV-NSVEGRCMFVWECINT----D-GH--------HLGMCVDTFMFGSCCS   66 (422)
Q Consensus        28 ~C~~-~~~~g~C~~~~~C~~~----~-g~--------~~~~C~~~~~~~~CC~   66 (422)
                      +|++ ++..|.|+.+.+|+..    . ..        ..+.|+.+..+.||||
T Consensus         2 ~C~tp~~~~G~Cv~i~~C~~~~~~l~~~~~~~~~~~l~~s~Cg~~~~~~VCCp   54 (54)
T 2ike_A            2 SCLTPDNKPGKCVNIKKCTHLAEIEEDPIGEDETTYLKNSVCAGPEDNSVCCG   54 (54)
T ss_dssp             EEECTTCCEEEEEETTTCHHHHHHHHSCCCHHHHHHHHHTBSSSSCSSEEEEC
T ss_pred             CCcCCCCCcEEEeeHHHChHHHHHhccCCCHHHHHHHHHccCCCCCCCeEeCc
Confidence            5999 8899999999999821    1 11        1238964556679996

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=92.17  E-value=0.031  Score=48.39  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=34.3

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHh
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  418 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~  418 (422)
                      .-++++||.+..     .++||+||+..++....+.+|++|+.+++|..
T Consensus       134 ~GDSGgpl~~~~-----~~vGi~s~~~~~c~~~~~~~~~pi~~~l~~~g  177 (189)
T 2ea3_A          134 PGDSGGSLLAGN-----QAQGVTSGGSGNCRTGGTTFFQPVNPILQAYG  177 (189)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             CCCccCeEEECC-----EEEEEEeecCCCCCCCCcEEEEEHHHHHHHCC
Confidence            457899998643     59999999987333346999999999998863

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=92.13  E-value=0.042  Score=48.65  Aligned_cols=29  Identities=24%  Similarity=0.270  Sum_probs=25.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAE  400 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~  400 (422)
                      -++++||.+.. .++++|+||+|||..|..
T Consensus       167 GDSGGPlv~~~-~g~~~lvGIvS~G~gc~~  195 (218)
T 3cp7_A          167 GSSGGPWFLGN-GTGGAQNSTNSYGYTFLP  195 (218)
T ss_dssp             TCTTCEEEESS-SSSSCEEEECCEEETTEE
T ss_pred             CCcCCeeEEcc-CCCeEEEEEEccccCCCC
Confidence            68999998873 677899999999999865

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=90.96  E-value=0.1  Score=46.79  Aligned_cols=46  Identities=20%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCccc-CCCCCceEEEccCchhHHhhh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~-~~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      -++|+||.+..    +.|+||+|||..|. ..+...+.+.|.+.+.|+.++
T Consensus       193 GdSGGPl~~~~----g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~~  239 (242)
T 1agj_A          193 GNSGSGIFNSN----GELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINE  239 (242)
T ss_dssp             GGTTCEEECTT----SEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHHH
T ss_pred             CCCchHhcccC----CEEEEEEeccccccCcCCCceeeEEehHHHHHHHHh
Confidence            46899997632    36999999999987 444578889998777776543

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=90.66  E-value=0.12  Score=44.51  Aligned_cols=43  Identities=21%  Similarity=0.192  Sum_probs=34.3

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHh
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVL  418 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~  418 (422)
                      .-++++||.+..     .++|++||+.. |.. +.|.+|++|+.+++.+.
T Consensus       140 ~GdSGgpl~~~~-----~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~lg  183 (187)
T 1hpg_A          140 GGDSGGAHFAGS-----VALGIHSGSSGCSGT-AGSAIHQPVTEALSAYG  183 (187)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHHT
T ss_pred             CCCCCCeEEECC-----EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHcC
Confidence            357899998653     59999999986 543 57999999999987654

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=87.74  E-value=0.11  Score=44.63  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchh
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVP  415 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~  415 (422)
                      .-++++||.+..     .++|++||+..++....+.+|++|+.+++
T Consensus       137 ~GDSGgpl~~~~-----~~vGi~s~g~~~c~~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 GGDSGGPWLTGS-----QAQGVTSGGTGDCRSGGITFFQPINPLLS  177 (186)
T ss_dssp             TTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHH
T ss_pred             CCCccCeEEECC-----EEEEEEeecCCCCCCCCcEEEEEHHHHHH
Confidence            468899998643     58999999976333335899999987764

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=86.16  E-value=12  Score=32.94  Aligned_cols=177  Identities=15%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             EccCCEEeecccCcCCCCCceEEEEE--eeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCe
Q psy15052        164 SNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI  241 (422)
Q Consensus       164 LIs~~~VLTAAhCv~~~~~~~~~V~l--G~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v  241 (422)
                      |.--.||||-+|-+.. +...++|+.  |.+.......           +.+||-     ...||.||||.+.+.  +.-
T Consensus        35 igyG~~iItn~HLf~r-nng~L~I~s~hG~f~v~nt~~-----------lki~~i-----~g~DiiiIrmPkDfp--Pf~   95 (241)
T 3mmg_A           35 IGFGPYIIANQHLFRR-NNGELTIKTMHGEFAVANSTQ-----------LQMKPV-----EGRDIIVIKMAKDFP--PFP   95 (241)
T ss_dssp             EEETTEEEECGGGGSS-TTCEEEEEETTEEEEEEEGGG-----------SCEEEC-----TBSSCEEEECCTTSC--CCC
T ss_pred             EeECCEEEEChhhccc-CCCeEEEEECCceEEccCCCc-----------eeeEEe-----CCccEEEEeCCCCCC--Ccc
Confidence            3456899999999875 334566653  3333221111           123332     247999999976553  332


Q ss_pred             eeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcC
Q psy15052        242 VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQG  321 (422)
Q Consensus       242 ~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~G  321 (422)
                      +.+++   ..+..++.+.++|--.....  ...  ...+...+..               ..+..|-..    ..++=.|
T Consensus        96 ~kl~F---R~P~~~E~V~lVg~~fq~k~--~~s--~vSesS~i~p---------------~~~~~fWkH----wIsT~~G  149 (241)
T 3mmg_A           96 QKLKF---RQPTIKDRVCMVSTNFQQKS--VSS--LVSESSHIVH---------------KEDTSFWQH----WITTKDG  149 (241)
T ss_dssp             SCCCB---CCCCTTCCEEEEEEEECSSC--EEE--EEEEEECCEE---------------CTTSSEEEE----CBCCCTT
T ss_pred             hhccc---CCCCCCCeEEEEEeecccCC--ccE--EECCcceeEE---------------cCCCCEEEE----EcCCCCC
Confidence            33333   12334566666664322110  000  0001111100               111222222    1223357


Q ss_pred             CCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCCCCccccCCCCceeEEeeeeecCc
Q psy15052        322 DSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIG  397 (422)
Q Consensus       322 DSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~pl~~~~~~~~~~l~g~~s~g~~  397 (422)
                      |-|.||+.. .+|.  +|||.|.+..-   +.-..|+.+..  +++++.++....-..+++    |.--.++||.=
T Consensus       150 ~CGlPlVs~-~Dg~--IVGiHsl~~~~---~~~N~F~~f~~--~f~~~~L~~~~~w~k~Wk----~npd~i~Wg~l  213 (241)
T 3mmg_A          150 QAGSPLVSI-IDGN--ILGIHSLTHTT---NGSNYFVEFPE--KFVATYLDAADGWCKNWK----FNADKISWGSF  213 (241)
T ss_dssp             CTTCEEEET-TTCC--EEEEEEEEETT---TCCEEEEECCT--THHHHHTTCSSCCBSCCC----CCGGGBCCTTC
T ss_pred             cCCCeEEEc-CCCc--EEEEEecccCC---CCcEEEEcCCH--HHHHHHhhCcccccCCcE----ECccceeEccc
Confidence            889999986 3443  99999987532   22356776643  222222322222223333    45556777654

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=82.90  E-value=11  Score=32.91  Aligned_cols=175  Identities=14%  Similarity=0.106  Sum_probs=86.9

Q ss_pred             ccCCEEeecccCcCCCCCceEEEE--EeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCee
Q psy15052        165 NNEKVDDFSTESVNSLLTSQIKIR--VGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV  242 (422)
Q Consensus       165 Is~~~VLTAAhCv~~~~~~~~~V~--lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~  242 (422)
                      .--.||||-+|-+... ...++|+  -|.+.......      .+|..+          ...||.||||.+.+.  +.-+
T Consensus        44 gyG~~iItn~HLf~~n-nG~L~I~s~hG~f~v~nt~~------lki~~i----------~g~DiiiIrmPkDfp--Pf~~  104 (229)
T 1lvm_A           44 GFGPFIITNKHLFRRN-NGTLLVQSLHGVFKVKNTTT------LQQHLI----------DGRDMIIIRMPKDFP--PFPQ  104 (229)
T ss_dssp             EETTEEEECGGGGGCC-SSEEEEEETTEEEEESCGGG------SEEEEC----------TTSSCEEEECCTTSC--CCCS
T ss_pred             eECCEEEeChhhhccC-CCcEEEEeCCCeEEeCCCCc------eeeEEe----------CCccEEEEeCCCcCC--Cccc
Confidence            4468999999999763 4667777  46665543322      122222          147999999988664  2222


Q ss_pred             eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCC
Q psy15052        243 PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGD  322 (422)
Q Consensus       243 PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GD  322 (422)
                      .+++   ..+..++.+.++|--......      . ..+.--+  .   .+       ...++.|-...    .++=.||
T Consensus       105 ~l~F---R~P~~~e~V~lVg~~fq~k~~------~-s~vSesS--~---i~-------p~~~~~fWkHw----IsT~~G~  158 (229)
T 1lvm_A          105 KLKF---REPQREERICLVTTNFQTKSM------S-SMVSDTS--C---TF-------PSSDGIFWKHW----IQTKDGQ  158 (229)
T ss_dssp             CCCB---CCCCTTCEEEEEEEECSSSSC------E-EEECCCE--E---CE-------EETTTTEEEEC----BCCCTTC
T ss_pred             cccc---CCCCCCCeEEEEEeEeecCCc------c-EEECCcc--e---eE-------ecCCCCEeEEE----eeCCCCc
Confidence            2332   123446666666644322111      0 0000000  0   00       00111222211    2223467


Q ss_pred             CCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccc-ccccccccCCCCCCccccCCCCceeEEeeeeecC
Q psy15052        323 SGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK-FVPWVLDTGDSGGPLQVKGKDGRYFLAGIISWGI  396 (422)
Q Consensus       323 SGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~-y~~WI~~~i~~~~pl~~~~~~~~~~l~g~~s~g~  396 (422)
                      =|.|||.. .++.  +|||.|.+..-.   .-..|+.+.. +.++|+..-.  .+....++    |.--.++||.
T Consensus       159 CGlPlVs~-~Dg~--IVGiHsl~~~~~---~~NyF~~f~~~f~~~L~~~~~--~~w~k~W~----fnpd~i~Wg~  221 (229)
T 1lvm_A          159 CGSPLVST-RDGF--IVGIHSASNFTN---TNNYFTSVPKNFMELLTNQEA--QQWVSGWR----LNADSVLWGG  221 (229)
T ss_dssp             TTCEEEET-TTCC--EEEEEEEEETTS---CSEEEEECCTTHHHHHHCGGG--CCEEESCC----CCSSEEEETT
T ss_pred             CCCcEEEC-CCCc--EEEEEcccccCC---CeEEEeCCCHHHHHHHhcccc--cccccCcE----ECcccceEcc
Confidence            79999986 3443  999999875422   2356776654 3344433211  12222333    4445567764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	422
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	1e-38
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	1e-35
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-35
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	4e-34
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	3e-33
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	4e-33
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	7e-32
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	1e-30
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	1e-30
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-30
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-30
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	1e-29
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	3e-29
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	6e-29
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	1e-28
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	1e-28
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	2e-27
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-27
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	8e-27
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	4e-26
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	6e-26
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	6e-26
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	1e-25
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	4e-25
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	6e-25
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	3e-24
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	5e-24
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	6e-24
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	7e-24
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	7e-24
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	1e-23
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	1e-23
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	4e-23
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	9e-23
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-22
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	2e-22
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	2e-22
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	3e-22
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	9e-22
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	1e-21
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	4e-21
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	5e-21
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	3e-13
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	6e-21
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	9e-20
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	2e-08
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	9e-20
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	1e-19
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	7e-19
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	3e-18
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	9e-18
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	2e-17
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	3e-17
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	7e-17
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	8e-16
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	2e-08
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	9e-15
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	3e-08
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	2e-14
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	2e-06
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	4e-14
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	6e-07
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	7e-13
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	2e-07
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	1e-11
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	1e-06
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	2e-11
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	1e-05

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  137 bits (345), Expect = 1e-38
 Identities = 73/184 (39%), Positives = 102/184 (55%), Gaps = 6/184 (3%)

Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICL 246
           +++   +          Q   V K ++H  +++   + D++L++L   + F  N+ PI L
Sbjct: 58  LQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117

Query: 247 PGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIF 306
           P       G +  VTGWG  SEGG+ P VLQKVTVP+VS+E CR+ +      + I D  
Sbjct: 118 PEQGHTATG-DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY----GADEILDSM 172

Query: 307 MCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPW 366
           +CAG   GG+DSCQGDSGGPL      G  +LAGI+SWG GCA    PGV T +S  V W
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAASDT-GSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDW 231

Query: 367 VLDT 370
           +   
Sbjct: 232 IKAN 235

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-35
 Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 6/174 (3%)

Query: 198 EEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIG-E 256
                 QER + + + HP +N FT++YD+AL+ LE P E++  + PICLP +  +    +
Sbjct: 70  RSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGK 129

Query: 257 NATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
              VTGWG    GG+   +LQK  + +++   C ++       + I+   MC GF +GG 
Sbjct: 130 AIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLL-----PQQITPRMMCVGFLSGGV 184

Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           DSCQGDSGGPL     DGR F AG++SWG GCA+ N PGV TR+  F  W+ + 
Sbjct: 185 DSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  128 bits (323), Expect = 1e-35
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
                Q     + + HP Y+ +  + D+ L++L  P      + P+ LP +     G   
Sbjct: 58  TEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP-TSCAPAGTMC 116

Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
           TV+GWG      +    LQ + +PI+S   C + +        I++   CAG+  GG+DS
Sbjct: 117 TVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSY-----PGMITNAMFCAGYLEGGKDS 171

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           CQGDSGGP+          L G++SWG GCAE   PGV  ++  F  W+  T
Sbjct: 172 CQGDSGGPVVC-----NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  125 bits (313), Expect = 4e-34
 Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
            S+ K  +G +  S L  P   + R + + +++P YN      D+A++ LE  V +   I
Sbjct: 50  PSKWKAVLGLHMASNLTSPQ-IETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYI 108

Query: 242 VPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
            PICLP  + +   G   ++ GWG L   GS   VLQ+  VP++SNEKC+          
Sbjct: 109 QPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQM----PEY 164

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
            I++  +CAG++ GG DSCQGDSGGPL  +  + R+ LAG+ S+G  CA  N PGV  R+
Sbjct: 165 NITENMVCAGYEAGGVDSCQGDSGGPLMCQE-NNRWLLAGVTSFGYQCALPNRPGVYARV 223

Query: 361 SKFVPWVLDT 370
            +F  W+   
Sbjct: 224 PRFTEWIQSF 233

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-33
 Identities = 66/198 (33%), Positives = 92/198 (46%), Gaps = 13/198 (6%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP------KYNFFTYEYDLALVRLETPVE 236
           +++  R   +  +  +      + GV   + H         N      D+ALV L +P+ 
Sbjct: 47  NRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP 106

Query: 237 FAPNIVPICL-PGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
               I P+CL      L+ G+  TVTGWG     G    VLQ+  VPI+SN+ C      
Sbjct: 107 LTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFY 166

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG---KDGRYFLAGIISWGIGCAEAN 352
                 I     CAG+  GG D+CQGDSGGP   +    +  R+ L GI+SWG GCA A 
Sbjct: 167 GN---QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQ 223

Query: 353 LPGVCTRISKFVPWVLDT 370
            PGV T++S F  W+   
Sbjct: 224 KPGVYTKVSDFREWIFQA 241

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 4e-33
 Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 198 EEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICL-PGSDDLLIGE 256
           E        GV + ++H +Y      YD+AL++LET V +  +  PICL    D  +I  
Sbjct: 66  EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYT 125

Query: 257 NATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
           +  VTGWG       +   LQK  +P+V+NE+C+  +    R   I+   +CAG+  GG+
Sbjct: 126 DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHKITHKMICAGYREGGK 181

Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           D+C+GDSGGPL  K  +  + L GI SWG GCA+   PGV T + ++V W+L+ 
Sbjct: 182 DACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (290), Expect = 1e-30
 Identities = 61/176 (34%), Positives = 84/176 (47%), Gaps = 8/176 (4%)

Query: 198 EEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGE- 256
           E+       GV    VH K+N F    D+AL++L   VE    I   CLP    LL  + 
Sbjct: 78  EDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDY 137

Query: 257 NATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
              VTGWGRL   G +   LQ+   P+V    C     R      + +  +CAG D G  
Sbjct: 138 PCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQ---RDWWGTTVKETMVCAGGD-GVI 193

Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLDT 370
            +C GDSGGPL  +  DG++ + GI+S+G G  C     P V TR+S ++ W+   
Sbjct: 194 SACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (287), Expect = 1e-30
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS 271
           + HP ++  TY  D+ L++L +PV+    +  + LP S     G    ++GWG     G 
Sbjct: 71  IKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGV 129

Query: 272 -LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
             P +LQ +  P++    C +          I+D  +C GF  GG+D+CQGDSGGP+   
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASS-----SFIITDNMVCVGFLEGGKDACQGDSGGPVVC- 183

Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
                  L GI+SWG GCA  + PGV T++  +V W+ DT
Sbjct: 184 ----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDT 219

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (286), Expect = 2e-30
 Identities = 61/193 (31%), Positives = 85/193 (44%), Gaps = 10/193 (5%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYD--LALVRLETPVEFAPN 240
              ++ +GEYD S LE              VHP +N         +ALV+L    +    
Sbjct: 41  RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDK 100

Query: 241 IVPICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRY 299
           +    LP + D+L       ++GWGRL  GG LP  LQ+  +P V  E C          
Sbjct: 101 VQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI-- 158

Query: 300 EFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVC 357
             +    +CAG D   R  C GDSGGPL     DG + + G+ S+    GC     P V 
Sbjct: 159 -TVKKTMVCAGGDT--RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVF 215

Query: 358 TRISKFVPWVLDT 370
           TR+S F+ W+ +T
Sbjct: 216 TRVSAFIDWIDET 228

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score =  112 bits (281), Expect = 1e-29
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
           E        V   + H ++   TY++D+A++RL+TP+ F  N+ P  LP +     G   
Sbjct: 62  EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP-TAPPATGTKC 120

Query: 259 TVTGWGRLS-EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD 317
            ++GWG  +  G   P  LQ +  P++S  KC + +        I+    C GF  GG+D
Sbjct: 121 LISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY-----PGKITSNMFCVGFLEGGKD 175

Query: 318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           SCQGDSGGP+   G+     L G++SWG GCA+ N PGV T++  +V W+ +T
Sbjct: 176 SCQGDSGGPVVCNGQ-----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT 223

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 3e-29
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 181 LTSQIKIRVGEYDFSK---------LEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRL 231
              + ++ +G+ +F +         + +  P+ +  +     H       Y  DL L+RL
Sbjct: 34  YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 93

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS 291
             P +    + PI LP  +  L                   P  LQ V + ++ NE C  
Sbjct: 94  SKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK 153

Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAE 350
                     ++D  +CAG  +GG  +C+ DSGGPL          L GI SWG   C E
Sbjct: 154 AH-----EMKVTDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCGE 203

Query: 351 ANLPGVCTRISKFVPWVLDT 370
              P V T++ KF  W+ +T
Sbjct: 204 PTEPSVYTKLIKFSSWIRET 223

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-28
 Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 11/195 (5%)

Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF--TYEYDLALVRLETPVEFA 238
           + + +KI V   + +  E  +  Q+R V++ + H  YN     Y +D+AL+ L+ P+   
Sbjct: 43  VETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLN 102

Query: 239 PNIVPIC---LPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR 295
             + PIC      ++  L   +  V+GWGR+   G    VLQ + VP+V    C      
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST-- 160

Query: 296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG 355
                 I +   CAGF  GGRDSCQGDSGGP  V   +G  FL GIISWG  CA     G
Sbjct: 161 ---KFTIYNNMFCAGFHEGGRDSCQGDSGGPH-VTEVEGTSFLTGIISWGEECAMKGKYG 216

Query: 356 VCTRISKFVPWVLDT 370
           + T++S++V W+ + 
Sbjct: 217 IYTKVSRYVNWIKEK 231

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-28
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 10/177 (5%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLL---IGEN 257
           Y  Q   V + +VHP++       D+AL+ LE PV+ + ++  + LP + +     +   
Sbjct: 67  YQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCW 126

Query: 258 ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF----LRAGRYEFISDIFMCAGFDN 313
            T  G     E    P  L++V VPI+ N  C + +            + D  +CAG  N
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184

Query: 314 GGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
             RDSCQGDSGGPL  K  +G +  AG++SWG GCA+ N PG+ TR++ ++ W+   
Sbjct: 185 TRRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHY 240

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 2e-27
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 11/171 (6%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATV 260
           +P+    +   M+        +  DL L+RL  P +    + PI LP  +     +    
Sbjct: 72  FPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLAS 131

Query: 261 TGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQ 320
                       P  LQ V + ++ NE C  ++      + ++D+ +CAG   GG+D+C+
Sbjct: 132 GWGSITPTRWQKPDDLQCVFITLLPNENCAKVY-----LQKVTDVMLCAGEMGGGKDTCR 186

Query: 321 GDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
            DSGGPL          L G  S+G + C +  +P + T + KF  W+ DT
Sbjct: 187 DDSGGPLIC-----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDT 232

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-27
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 198 EEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGEN 257
           +     Q    ++   +   N   + +D+ L+RL+        + P+ L       +G+ 
Sbjct: 61  QPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPK-VGQK 119

Query: 258 ATVTGWGRL-SEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
             ++GWG + S   + P  L    V I S  KC   +        I++  +CAG  N G 
Sbjct: 120 CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAY-----PGKITEGMVCAGSSN-GA 173

Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
           D+CQGDSGGPL          L GI SWG   C +   PGV T+I ++  W+  T
Sbjct: 174 DTCQGDSGGPLVC-----DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKT 223

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 4e-26
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 4/172 (2%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
                     V+++   +        D+AL++L +P      ++P CLP  + ++     
Sbjct: 76  AHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE 135

Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
                   ++G     +L +  +P++ N+ C            +    +CAG   GG DS
Sbjct: 136 CFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFL---NGRVQSTELCAGHLAGGTDS 192

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           CQGDSGGPL    K  +Y L G+ SWG+GCA  N PGV  R+S+FV W+   
Sbjct: 193 CQGDSGGPLVCFEK-DKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 243

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 6e-26
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 15/188 (7%)

Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
            +++ +G+++  + E          V+ ++HP Y+  +++ D+ L+RL  P + +  I P
Sbjct: 46  NLQVFLGKHNLRQRESSQEQSSV--VRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP 103

Query: 244 ICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFIS 303
           +     D      +  + GWG+ ++G   P  +Q   + +VS E+C   +        I+
Sbjct: 104 LP-LERDCSANTTSCHILGWGKTADGD-FPDTIQCAYIHLVSREECEHAY-----PGQIT 156

Query: 304 DIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISK 362
              +CAG +  G+DSCQGDSGGPL          L G++SWG I C     PGV T + +
Sbjct: 157 QNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCR 211

Query: 363 FVPWVLDT 370
           +  W+  T
Sbjct: 212 YTNWIQKT 219

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 6e-26
 Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 45/212 (21%)

Query: 203 YQERGVVKKMVHPKYNFF---------TYEYDLALVRLETPVEFAPNIVPICLPGSDDLL 253
            ++  +   + HP YN            Y+YD+AL++L+  +++   I PICLP ++   
Sbjct: 68  KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTT 127

Query: 254 I-------------GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRA---- 296
                          E        +          L +  V I + +K  S    A    
Sbjct: 128 RALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAP 187

Query: 297 ------GRYEFISDIFMCAGFDNG--GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGC 348
                    E ++  F+C G  +     ++C+GDSGGPL V     R+   G+ISWG+  
Sbjct: 188 GYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVD 246

Query: 349 AEAN----------LPGVCTRISKFVPWVLDT 370
              N                 + + +PW+ + 
Sbjct: 247 VCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 278

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score =  102 bits (253), Expect = 1e-25
 Identities = 63/159 (39%), Positives = 82/159 (51%), Gaps = 10/159 (6%)

Query: 211 KMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-DLLIGENATVTGWGRLSEG 269
             V    ++     DLA+++L T +    NI    L  S  D + G +ATV GWG  SEG
Sbjct: 70  SSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEG 129

Query: 270 GS-LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ 328
           GS  P  L KVTVPIVS   CR+ +        I++   CAG  +GG+DSCQGDSGGP+ 
Sbjct: 130 GSSTPVNLLKVTVPIVSRATCRAQY----GTSAITNQMFCAGVSSGGKDSCQGDSGGPIV 185

Query: 329 VKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV 367
               D    L G +SWG GCA  N  GV   +     ++
Sbjct: 186 ----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 4e-25
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 186 KIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPIC 245
           KI+V     +  E+    Q   VVK + HP YN  T   D+ L++L++  + +  + P+ 
Sbjct: 50  KIQVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLN 109

Query: 246 LPGSD-DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISD 304
           LP  +  +  G+   V GWG+L   G     LQ+V + +  ++KC S      +  F   
Sbjct: 110 LPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYL----KNYFDKA 165

Query: 305 IFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
             +CAG     R S +GDSGGPL       +   AGI+S+G      + P   T++S F+
Sbjct: 166 NEICAGDPKIKRASFRGDSGGPLVC-----KKVAAGIVSYGQNDG--STPRAFTKVSTFL 218

Query: 365 PWVLDT 370
            W+  T
Sbjct: 219 SWIKKT 224

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 6e-25
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLL-----IG 255
               +  + +  VHP Y+  T + D+AL+ L  P   +  IVPICLP S          G
Sbjct: 64  KWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAG 123

Query: 256 ENATVTGWGRLSEGGSLPP-----VLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
           +   VTGWG  S            VL  + +P+V + +C  +         +S+  +CAG
Sbjct: 124 QETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM-----SNMVSENMLCAG 178

Query: 311 FDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
                +D+C+GDSGGP+ V    G +FL G++SWG GC   +  GV T++S+++ W+   
Sbjct: 179 ILGDRQDACEGDSGGPM-VASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGH 237

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 3e-24
 Identities = 55/183 (30%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 192 YDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICL-PGSD 250
              S   E    Q   V K+  +P Y+  T E DL L++L    +    +  + L    D
Sbjct: 53  GAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD 112

Query: 251 DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
           D+  G    V GWGR     S    L++V + I+  + C            I    +CAG
Sbjct: 113 DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRN-HYNFNPVIGMNMVCAG 171

Query: 311 FDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWV 367
              GGRDSC GDSG PL  +G        G+ S+G+   C +   PGV   +S K + W+
Sbjct: 172 SLRGGRDSCNGDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226

Query: 368 LDT 370
           + T
Sbjct: 227 IMT 229

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 97.8 bits (242), Expect = 5e-24
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLP 273
             +     +  DL L+ L  P +    +  I LP  +  +                  + 
Sbjct: 83  DTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVS 142

Query: 274 PVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD 333
             LQ V + ++SNEKC   +      + ++D+ +CAG   GG+D+C GDSGGPL      
Sbjct: 143 HDLQCVNIHLLSNEKCIETY-----KDNVTDVMLCAGEMEGGKDTCAGDSGGPLIC---- 193

Query: 334 GRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
               L GI S G   CA+   P +  ++ KF  W+   
Sbjct: 194 -DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 6e-24
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA----TVTGWGRLS 267
           + H ++   TY++D+A++RL+TP+ F  N+ P CLP  D             V+G+GR  
Sbjct: 75  IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTH 134

Query: 268 EGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPL 327
           E G     L+ + VP V    C+           I+    CAG+D    D+CQGDSGGP 
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGGPH 189

Query: 328 QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
            V      YF+ GI+SWG GCA     G+ T+++ F+ W+  +
Sbjct: 190 -VTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.1 bits (240), Expect = 7e-24
 Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 12/190 (6%)

Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
             S I++R+GE + + +E     Q     K +VHP YN  T   D+ L++L++       
Sbjct: 42  YKSGIQVRLGEDNINVVE--GNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR 99

Query: 241 IVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
           +  I LP S      +          S G S P VL+ +  PI+S+  C+S +       
Sbjct: 100 VASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY-----PG 154

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI 360
            I+    CA    G  DSCQGDSGGP+          L GI+SWG GC   N PGV T++
Sbjct: 155 QITSNMFCAYGLEGKGDSCQGDSGGPVVC-----SGKLQGIVSWGSGCQAKNKPGVYTKV 209

Query: 361 SKFVPWVLDT 370
             +V W+  T
Sbjct: 210 CNYVSWIKQT 219

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (241), Expect = 7e-24
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 5/177 (2%)

Query: 198 EEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI--- 254
           E     Q R V + ++   Y   T  +D+AL+RL  PV    ++VP+CLP          
Sbjct: 63  EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLA 122

Query: 255 -GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDN 313
               + V+GWG+L + G+    L  + VP +  + C     + G    I++   CAG+ +
Sbjct: 123 FVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSD 182

Query: 314 GGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           G +DSC+GDSGGP       G ++L GI+SWG GCA     GV TR+S+++ W+   
Sbjct: 183 GSKDSCKGDSGGPH-ATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKL 238

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 1e-23
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 188 RVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP 247
            V     S  +     Q   + K +   +        D+ LV+L+T  +   ++  + + 
Sbjct: 55  TVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR 114

Query: 248 GSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIF 306
               L  G    VTGWG            L++VTV ++S + C S     G   FI+   
Sbjct: 115 SKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDP-FITKDM 173

Query: 307 MCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS-KFVP 365
           +CAG   G +DSC+GD+GGPL       +     I+S G  C  A  PG+ T ++ K+  
Sbjct: 174 VCAGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQT 228

Query: 366 WVLDT 370
           W+   
Sbjct: 229 WIKSN 233

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 4e-23
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GEN 257
           +    Q   V + + HP YN   +  D+ L++LE   +    + P+ LP +   +  G+ 
Sbjct: 62  QEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQT 121

Query: 258 ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD 317
            +V GWG+ +  G     LQ+V + +  + KC S      R+ + S I +C G     + 
Sbjct: 122 CSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL----RHYYDSTIELCVGDPEIKKT 177

Query: 318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           S +GDSGGPL            GI+S+G        P  CT++S FV W+  T
Sbjct: 178 SFKGDSGGPLVC-----NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKT 223

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 94.1 bits (232), Expect = 9e-23
 Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 183 SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIV 242
              ++ VGE++ ++      Y     +    +   +     YD+AL+RL   V     + 
Sbjct: 51  LTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110

Query: 243 PICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
              LP +  +L       +TGWG     G L   LQ+  +P V    C S          
Sbjct: 111 LGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGST--- 167

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG--IGCAEANLPGVCTR 359
           + +  +CAG D G R  CQGDSGGPL     +G+Y + G+ S+   +GC     P V TR
Sbjct: 168 VKNSMVCAGGD-GVRSGCQGDSGGPL-HCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTR 225

Query: 360 ISKFVPWVLDT 370
           +S ++ W+ + 
Sbjct: 226 VSAYISWINNV 236

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 93.3 bits (230), Expect = 2e-22
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 212 MVHPKYNFFTYEYD--LALVRLETPVEFAPNIVPICLPGSDDLLIG-ENATVTGWGRLSE 268
           +VH  +N         +AL++L +PV     I   CLP +  +L       VTGWGRL  
Sbjct: 78  VVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQT 137

Query: 269 GGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQ 328
            G+ P +LQ+  + +V    C         +       M     +G   SC GDSGGPL 
Sbjct: 138 NGASPDILQQGQLLVVDYATCSKPG----WWGSTVKTNMICAGGDGIISSCNGDSGGPLN 193

Query: 329 VKGKDGRYFLAGIISWG--IGCAEANLPGVCTRISKFVPWVLDT 370
            +G +G++ + GI+S+G  +GC   + P V TR+S ++ W+   
Sbjct: 194 CQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSV 237

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 92.5 bits (228), Expect = 2e-22
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 16/188 (8%)

Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
           +I + +G +D  K E     Q+  V K+++H  YN     +D+ L++LE  VE  P +  
Sbjct: 50  EITVILGAHDVRKRE--STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNV 107

Query: 244 ICLPGSDDLL-IGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
           + LP   D +  G      GWG+          L++V + I+  + C           + 
Sbjct: 108 VPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDY------RYYE 161

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISK 362
               +C G     R +  GDSGGPL   G        GI+S+G   A    P + TR+S 
Sbjct: 162 YKFQVCVGSPTTLRAAFMGDSGGPLLCAG-----VAHGIVSYGHPDA--KPPAIFTRVST 214

Query: 363 FVPWVLDT 370
           +VPW+   
Sbjct: 215 YVPWINAV 222

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 93.1 bits (230), Expect = 3e-22
 Identities = 18/163 (11%), Positives = 32/163 (19%), Gaps = 7/163 (4%)

Query: 204 QERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGW 263
           +         +   +    +    +       +F    +              N    GW
Sbjct: 81  RAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAAN------PAFNLFWAGW 134

Query: 264 GRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDS 323
            R  +       +    V         S               +   +   G  +  G S
Sbjct: 135 DRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSS 194

Query: 324 GGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPW 366
           G P+    K     L G  S        N      R+      
Sbjct: 195 GSPIYSPEKRVLGQLHGGPSSCSATG-TNRSDQYGRVFTSWTG 236

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 91.4 bits (225), Expect = 9e-22
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 184 QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVP 243
             ++ +GE++ +  E          V        +     YD+AL+RL T       +  
Sbjct: 52  TWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQL 111

Query: 244 ICLPGSDDLLI-GENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFI 302
             LP S+ +L       +TGWG+ S GG L   L++  +P V +  C S       +   
Sbjct: 112 AALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSG-----WWGS 166

Query: 303 SDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISW--GIGCAEANLPGVCTRI 360
           +          G    C GDSGGPL  +  +G Y++ G+ S+    GC  +  P V TR+
Sbjct: 167 TVKTTMVCAGGGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRV 225

Query: 361 SKFVPWVLDT 370
           S ++ W+   
Sbjct: 226 SAYISWMNGI 235

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 1e-21
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 12/181 (6%)

Query: 192 YDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD 251
              S  +     +   V++ + HP     T ++DL L++L       P + P+     D 
Sbjct: 56  GAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDR 115

Query: 252 -LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG 310
            +  G    V GWG ++  G  P  LQ V +P++    C         +   +       
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRT-----HHDGAITERLMC 170

Query: 311 FDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLD 369
            ++  RDSC+GDSGGPL          L G+++ G   C     PG+ TR++ +  W+  
Sbjct: 171 AESNRRDSCKGDSGGPLV-----CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

Query: 370 T 370
            
Sbjct: 226 V 226

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 89.4 bits (220), Expect = 4e-21
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 11/160 (6%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS 271
                  +    +DL L+RL  P      +  + LP  +  L     T       +    
Sbjct: 83  KKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNR 142

Query: 272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG 331
               LQ V + + SNEKC   +      E +++  +CA   +     C GDSGG L   G
Sbjct: 143 GSGTLQCVELRLQSNEKCARAY-----PEKMTEFVLCATHRDDSGSICLGDSGGALICDG 197

Query: 332 KDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDT 370
                   GI SWG   CA+ N   V T++     W+ +T
Sbjct: 198 -----VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKET 232

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 89.0 bits (219), Expect = 5e-21
 Identities = 46/112 (41%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
           TV GWG   EGGS    L K  VP VS+  CRS +   G     ++       D GG D+
Sbjct: 111 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSAY---GNELVANEEICAGYPDTGGVDT 167

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           CQGDSGGP+  K     +   GI+SWG GCA    PGV T +S F   +   
Sbjct: 168 CQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASA 219

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 66.7 bits (161), Expect = 3e-13
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GDSGGP+  K     +   GI+SWG GCA    PGV T +S F   +    
Sbjct: 170 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 6e-21
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 4/200 (2%)

Query: 172 FSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRL 231
              +   +   + + + +G  +  +L +   +  R V     + +   + +E D+AL+ L
Sbjct: 41  LYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL 100

Query: 232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS 291
           E  V   PN++PICLP +D             G       +   L+ V +P+ + + C +
Sbjct: 101 ENSVTLGPNLLPICLPDNDTFYD-LGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACEN 159

Query: 292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKD-GRYFLAGIISWGIGCAE 350
                 R +  S    CAG  +  +D+CQGDSGG   V+  +  R+   GI+SWGIGC+ 
Sbjct: 160 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR 219

Query: 351 ANLPGVCTRISKFVPWVLDT 370
               G  T++  +V W+   
Sbjct: 220 G--YGFYTKVLNYVDWIKKE 237

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.2 bits (209), Expect = 9e-20
 Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENAT 259
              Q   V + + HP YN  T   D+ L++L    +    + PI LP S   +  G   +
Sbjct: 64  RTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCS 123

Query: 260 VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSC 319
           V GWGRL         LQ+V + + S EKC + F       +I    +CAG  +  ++S 
Sbjct: 124 VAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-----KNYIPFTQICAGDPSKRKNSF 178

Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
            GDSGGPL   G        GI+S+G        P V TRIS F+ W+  T
Sbjct: 179 SGDSGGPLVCNG-----VAQGIVSYGRNDG--TTPDVYTRISSFLSWIHST 222

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 366 WVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
               +GDSGGPL   G        GI+S+G        P V TRIS F+ W+  T+
Sbjct: 175 KNSFSGDSGGPLVCNG-----VAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 85.5 bits (210), Expect = 9e-20
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 13/188 (6%)

Query: 181 LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPN 240
           +     + V     +  E+             VH  YN F    D+A++RL  PV     
Sbjct: 43  MDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAA 102

Query: 241 IVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE 300
           I  + LP +D  +                  +  VL++V VPI+SN  C +++       
Sbjct: 103 IATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY------- 155

Query: 301 FISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCTR 359
            I           GG+ +C GDSGGPL     +      GI S+G     EA  P   TR
Sbjct: 156 GIVTDGNICIDSTGGKGTCNGDSGGPL-----NYNGLTYGITSFGAAAGCEAGYPDAFTR 210

Query: 360 ISKFVPWV 367
           ++ F+ W+
Sbjct: 211 VTYFLDWI 218

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 85.2 bits (209), Expect = 1e-19
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 10/173 (5%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
                      K +   K N    + D+ L++L+ P+  + +I P+ LP S   +     
Sbjct: 60  NEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCR 119

Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
            +          + P V     + ++ +  C++ +             +CAG   GG+D+
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQAGY----PELLAEYRTLCAGIVQGGKDT 175

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDT 370
           C GDSGGPL   G+       GI+S+G   C +   PG+ T +  +  W+   
Sbjct: 176 CGGDSGGPLICNGQ-----FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 7e-19
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICL--PGSDDLLIGENATVTGWGRLSEG 269
           ++        ++ D+ALVRL+ PV+  P + PICL    SD  L+  +  +      +E 
Sbjct: 92  LLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK 151

Query: 270 GSLPPVLQKVTVPIVSNEKCRSMFL---RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGP 326
                 L+   +P+    KC+ + +    A    ++    M       G DSC+GDSGG 
Sbjct: 152 RDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGA 211

Query: 327 L--QVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
              Q      +++ AG++SWG  C      G+ TR+  +V W++ T
Sbjct: 212 FAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKT 254

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 3e-18
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 5/176 (2%)

Query: 200 PYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP--GSDDLLIGEN 257
           P+  Q       +     +   ++ D+AL++L   V    NI PICLP   ++  +  ++
Sbjct: 63  PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDD 122

Query: 258 ATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYE-FISDIFMCAGFDNGGR 316
                   L++ G L   L  V +PIV ++KC + + +       ++   +CAG ++GG+
Sbjct: 123 IGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGK 182

Query: 317 DSCQGDSGGPLQVK-GKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
           DSC+GDSGG L     +  R+F+ GI+SWG + C EA   GV T++  ++PW+ + 
Sbjct: 183 DSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENI 238

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (195), Expect = 9e-18
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 4/171 (2%)

Query: 200 PYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENAT 259
            +   +    + +   +  +     DL L++L  P      +  I LP     +  + + 
Sbjct: 59  VHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSC 118

Query: 260 VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSC 319
                  +   +   +L+   + I+ NEKC            +++  +CAG +  G   C
Sbjct: 119 SVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHH---RGKVTLNESEICAGAEKIGSGPC 175

Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +GD GGPL  +       + G+I  G GCA  N PG+  R++ +  W+   
Sbjct: 176 EGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKI 225

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 2e-17
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 187 IRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICL 246
           + +G ++ ++ E+ +   E  V+K+  HPKYN  T  +D+ L++L+        +  +  
Sbjct: 51  VTLGAHNITEEEDTWQKLE--VIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF 108

Query: 247 PGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDI 305
           P   +    G    V GWGR          LQ+V + ++  + C          +F  ++
Sbjct: 109 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHF------RDFDHNL 162

Query: 306 FMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVP 365
            +C G     + + +GDSGGPL   G        GI+S+G   A    P V TRIS + P
Sbjct: 163 QLCVGNPRKTKSAFKGDSGGPLLCAG-----VAQGIVSYGRSDA--KPPAVFTRISHYRP 215

Query: 366 WVLDT 370
           W+   
Sbjct: 216 WINQI 220

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 77.9 bits (190), Expect = 3e-17
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 13/159 (8%)

Query: 212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGS 271
           +V+  Y+ F    D+ALV L  P++F   + PI L  +D+ L     T+TGWG    GG+
Sbjct: 74  VVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGN 133

Query: 272 LPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG 331
            P  LQ++ + +   ++C     R      + D  +C      G  +C GDSGGPL    
Sbjct: 134 TPNALQEIELIVHPQKQCERDQWR------VIDSHIC-TLTKRGEGACHGDSGGPLVA-- 184

Query: 332 KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
                   GI+S+G  CA    P V TR+S FV W+   
Sbjct: 185 ---NGAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINAN 219

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 77.6 bits (189), Expect = 7e-17
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 257 NATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGR 316
              ++GWGR     +LP +LQK ++P+++  +C +          I D  +C     G  
Sbjct: 126 TCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAM-VGVGGANIWDNHICVQDPAGNT 184

Query: 317 DSCQGDSGGPLQVKGKDGRYFLAGIISW----GIGCAEANLPGVCTRISKFVPWVLD 369
            +C GDSGGPL     DG   + G+ SW    G+G    + P V TR+S ++ W+ D
Sbjct: 185 GACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 8e-16
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 14/171 (8%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLP-GSDDLLIGENAT 259
              Q     + + HP+YN  T + D+ L++L   V    N+ P+ LP   + L  G   T
Sbjct: 64  NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCT 123

Query: 260 VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSC 319
           V GWGR+S        L++V + +  + +C  +F       +     +C G     + + 
Sbjct: 124 VAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIF-----GSYDPRRQICVGDRRERKAAF 177

Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT 370
           +GDSGGPL            GI+S+G        P V TR+S F+PW+  T
Sbjct: 178 KGDSGGPLLC-----NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTT 221

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 372 DSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           DSGGPL            GI+S+G        P V TR+S F+PW+  T+
Sbjct: 180 DSGGPLLC-----NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 9e-15
 Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 21/176 (11%)

Query: 197 LEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-G 255
           +    P Q+   V ++    Y+      D+ L++L +P   + ++  + LP  D  +  G
Sbjct: 63  VRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHG 122

Query: 256 ENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG 315
                 GWGR+        VLQ++ V +V+                     +C       
Sbjct: 123 TQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHN--------------ICTFVPRRK 168

Query: 316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDT 370
              C GDSGGPL   G      + GI S+ I GCA    P   TR++ +V W+  T
Sbjct: 169 AGICFGDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTV 421
           GDSGGPL   G      + GI S+ I GCA    P   TR++ +V W+  T+
Sbjct: 174 GDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 69.8 bits (169), Expect = 2e-14
 Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 29/187 (15%)

Query: 182 TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI 241
           +     +   Y                   +     N    +YD A+++ +T +      
Sbjct: 54  SRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGY 113

Query: 242 VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEF 301
             I        L G    ++G+       +      +++  +   +   + +        
Sbjct: 114 RSIR---QVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY-------- 162

Query: 302 ISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL-PGVCTRI 360
                          D+  G+SG  +     D    + G+ + G      N  P      
Sbjct: 163 -------------TIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAF 205

Query: 361 SKFVPWV 367
            +F+ + 
Sbjct: 206 VEFINYA 212

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 365 PWVLDTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANL-PGVCTRISKFVPWV 417
                +G+SG  +     D    + G+ + G      N  P       +F+ + 
Sbjct: 163 TIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYA 212

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (168), Expect = 4e-14
 Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 20/177 (11%)

Query: 201 YPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-GENAT 259
              ++   +  M    Y+      DL L++L+       ++  + LP  +  +  G    
Sbjct: 65  RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQ 124

Query: 260 VTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSC 319
           V GWG    GG L    + V V +   ++CR                +C G        C
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNN-------------VCTGVLTRRGGIC 171

Query: 320 QGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGP 376
            GD G PL            G+ S+ +G      P   TR++ F  W+    ++ GP
Sbjct: 172 NGDGGTPLVC-----EGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLNNPGP 222

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 6e-07
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV 421
           GD G PL            G+ S+ +G      P   TR++ F  W+   +
Sbjct: 173 GDGGTPLVC-----EGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVL 217

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 7e-13
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 21/176 (11%)

Query: 197 LEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLI-G 255
           L    P ++   V+++    Y+      D+ +++L        N+    LP     L  G
Sbjct: 60  LSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119

Query: 256 ENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGG 315
                 GWG L     +  VLQ++ V +V++   RS               +C       
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN--------------VCTLVRGRQ 165

Query: 316 RDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDT 370
              C GDSG PL   G      + GI S+   GCA    P     +++FV W+   
Sbjct: 166 AGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 366 WVLDTGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTV 421
             +  GDSG PL   G      + GI S+   GCA    P     +++FV W+   +
Sbjct: 166 AGVCFGDSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 199 EPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENA 258
           +          + + H  +N  TY  D+AL+++   VE+  NI PI LP  ++L      
Sbjct: 62  QYEGEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFEN 120

Query: 259 TVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS 318
                    +  +   +LQ     ++ N++C   +        I       G  + G+  
Sbjct: 121 IWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEY-----PPGIIVESTICGDTSDGKSP 175

Query: 319 CQGDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCTRISKFVPWVLDT 370
           C GDSGGP  +     +  L G++S+  G   E+  P   +R++ ++ W+   
Sbjct: 176 CFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 383 DGRYFLAGIISWGIGCA-EANLPGVCTRISKFVPWVLDT 420
             +  L G++S+  G   E+  P   +R++ ++ W+   
Sbjct: 187 SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 22/154 (14%)

Query: 211 KMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG 270
            +V  +        D  +VR       A  +                +T       +   
Sbjct: 48  SVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYN-----------GSTQDISSAANAVV 96

Query: 271 SLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK 330
                    T  + S                                S  GDSGG     
Sbjct: 97  GQAIKKSGSTTKVTSGTVTAV------NVTVNYGDGPVYNMVRTTACSAGGDSGGAHFAG 150

Query: 331 GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 364
                    GI S   GC+      +   +++ +
Sbjct: 151 SV-----ALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFV 414
           GDSGG              GI S   GC+      +   +++ +
Sbjct: 141 GDSGGAHFAGSV-----ALGIHSGSSGCSGTAGSAIHQPVTEAL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	422
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.92
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.91
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.68
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.66
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.61
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.37
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	99.05
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.94
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	98.8
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	98.79
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	98.79
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	98.77
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	98.73
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	98.72
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	98.72
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	98.72
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	98.71
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.7
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	98.7
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	98.7
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	98.66
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	98.65
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	98.65
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	98.63
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.63
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	98.62
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	98.61
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	98.6
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	98.6
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	98.56
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.56
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	98.54
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.53
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.53
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	98.53
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	98.52
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	98.48
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1elva1	259	Complement C1S protease, catalytic domain {Human (	98.45
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	98.42
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	98.42
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	98.42
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	98.41
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	98.41
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	98.36
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	98.36
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	98.36
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	98.34
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	98.33
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	98.32
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	98.31
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	98.29
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	98.29
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	98.28
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	98.28
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	98.27
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	98.25
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	98.22
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	98.21
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	98.2
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	98.18
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	98.0
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	97.91
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.76
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	96.48
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	96.19
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	96.17
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	95.36

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-45  Score=333.12  Aligned_cols=228  Identities=33%  Similarity=0.562  Sum_probs=199.1

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC--CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL--LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      .+|..++|||+|+|+..+.+.|+|+||+++||||||||+...  ....+.+.+|..+.....+. ..+.+.|.++++||+
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~hp~   83 (235)
T d1ekbb_           5 SDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSP-QIETRLIDQIVINPH   83 (235)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCT-TCEEEEEEEEEECTT
T ss_pred             EECCCCCCCcEEEEEECCCEEEEEEEEcCCEEEEChhhccCCCCCccceeeeecccccccccCc-ceeEeeeeeeeeccc
Confidence            568889999999999888888999999999999999999763  33567788887766554433 368999999999999


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhh
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLR  295 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~  295 (422)
                      |+.....||||||||++|+.|+++++|||||.... ...+..+.++|||.....+.....|+...+.+.+.+.|...+..
T Consensus        84 ~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  163 (235)
T d1ekbb_          84 YNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPE  163 (235)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEBCCHHHHHHHCTT
T ss_pred             ccccCccchhhhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCCcccccceeeEEEEecHHHhcccccc
Confidence            99999999999999999999999999999997664 34688899999999887777788899999999999999877654


Q ss_pred             cCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        296 AGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       296 ~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      .    ...+.++|+....+..+.|.||+||||+++ .+++|+|+||+|+|..|+..+.|++||||..|++||+++|.
T Consensus       164 ~----~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         164 Y----NITENMVCAGYEAGGVDSCQGDSGGPLMCQ-ENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             S----CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             c----ccCcccEEEEcCCCCcccccCCCCCccEEc-cCCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            3    467889999877777889999999999998 56899999999999999888999999999999999999874

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=331.74  Aligned_cols=228  Identities=34%  Similarity=0.598  Sum_probs=198.6

Q ss_pred             CCCCCCCcCeEEEEEecCC-CCceEEEccCCEEeecccCcCCC------CCceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLG-RPVNVYSNNEKVDDFSTESVNSL------LTSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~-~~C~GtLIs~~~VLTAAhCv~~~------~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      .+|.++||||+|.|+..++ ++|+|+||+++||||||||+.+.      ....+.+..+..+...... .+.+.+.|.++
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i   83 (241)
T d1eaxa_           5 TDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSA-PGVQERRLKRI   83 (241)
T ss_dssp             EECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTS-TTCEEEEEEEE
T ss_pred             EECCCCCCCcEEEEEECCCCEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccC-CCcEEEEEEEE
Confidence            6789999999999987654 47999999999999999999752      2345677777766544332 24789999999


Q ss_pred             EECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHH
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~  290 (422)
                      ++||+|+.....||||||||++|+.+++.++|||||.... ...+..+...||+...........|+...+.+++.+.|+
T Consensus        84 ~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~  163 (241)
T d1eaxa_          84 ISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCE  163 (241)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHHHHH
T ss_pred             EECCcccccccCCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccccccccceEEEEEEeCHHHHH
Confidence            9999999999999999999999999999999999987654 446788999999988777777888999999999999999


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      ..+...     +...++|++...+..+.|.||+||||++.+.+++|+|+||+|++..|+..+.|++|+||++|++||+++
T Consensus       164 ~~~~~~-----~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~  238 (241)
T d1eaxa_         164 NLLPQQ-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN  238 (241)
T ss_dssp             HHSTTT-----CCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHH
T ss_pred             HHhCcc-----ccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            988653     778899998777788999999999999987889999999999999998889999999999999999998


Q ss_pred             CC
Q psy15052        371 GD  372 (422)
Q Consensus       371 i~  372 (422)
                      ++
T Consensus       239 ~g  240 (241)
T d1eaxa_         239 TG  240 (241)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-44  Score=326.69  Aligned_cols=228  Identities=30%  Similarity=0.590  Sum_probs=196.8

Q ss_pred             CCCCCCCcCeEEEEEecCC---CCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESLG---RPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~---~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .++.++||||+|.|+....   ++|+|+||+++||||||||+.... ...+.+..+.........  ..+.+.|.+++.|
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~h   82 (237)
T d1xx9a_           5 TASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKE--DTSFFGVQEIIIH   82 (237)
T ss_dssp             EECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGTTCSCGGGEEEEESCSBGGGCCT--TCCCEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEECCCCccEEEEEEEEeCCEEEeCeEeeecccCccceeeeccccccccccc--ceEEEEeeEEEEe
Confidence            6789999999999986653   369999999999999999998744 345667766655554443  2678899999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....+|||||+|++++.+.++++|||++.... ......+.+.||+.........+.++...+.+++.++|+..+
T Consensus        83 ~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  162 (237)
T d1xx9a_          83 DQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY  162 (237)
T ss_dssp             TTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHHHHT
T ss_pred             cccccccccceeEEEEeccccccccccceEEecccccccccccccEEEEeecccccccCCCccEEEEEEEeCHHHHhhhh
Confidence            9999999999999999999999999999999987664 345678999999988777777889999999999999999887


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ...    .+.+.++|++...+..+.|.||+||||++. .+++|+|+||+|++.+|+..+.|++|+||++|++||++++++
T Consensus       163 ~~~----~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~~  237 (237)
T d1xx9a_         163 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (237)
T ss_dssp             TTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHCC
T ss_pred             cCC----CCCCceEEEecCCCCcccccCCccceeEEe-cCCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHCC
Confidence            553    367899999877778899999999999998 578999999999999998889999999999999999999874

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=9.7e-44  Score=325.41  Aligned_cols=225  Identities=38%  Similarity=0.647  Sum_probs=192.1

Q ss_pred             CCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCC---CceEEEEEeeeecccCCCCCCcEEEeEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLL---TSQIKIRVGEYDFSKLEEPYPYQERGVVKK  211 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~---~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i  211 (422)
                      .++.+++|||+|+|+....    ++|+|+||+++||||||||+....   ...+.+..+.........  ..+...|+++
T Consensus         5 ~~~~~~~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i   82 (237)
T d2f91a1           5 TDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEG--SEQIITVSKI   82 (237)
T ss_dssp             EECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCS--CCEEEEEEEE
T ss_pred             EECCCCCCCcEEEEEEecCCCCcEEEEEEEEeCCEEEECcccccccCCccccceeEEeeecccccccC--cceeeeEEEE
Confidence            5688899999999975432    369999999999999999997633   234555555544433332  3688999999


Q ss_pred             EECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        212 MVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       212 ~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      ++||+|+.....+|||||||++++.+++.+.|||++.... ..+..+.++|||.+...+..++.|++..+.+++.+.|+.
T Consensus        83 ~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~-~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~  161 (237)
T d2f91a1          83 ILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-TATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA  161 (237)
T ss_dssp             EECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-CCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred             EEccccCCCccccceeeeccccccccCCceeeeeccccCc-ccccceeeccccccCCCCcCCchheEEEEEEeCHHHHhh
Confidence            9999999999999999999999999999999999987663 457789999999988877778899999999999999998


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccC
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                      .+...    .+.+.++|....+...+.|.||+||||++. .+++|+|+||+|+|..|+..+.|++||||++|++||++++
T Consensus       162 ~~~~~----~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~-~~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         162 DYGAD----EILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             HHCTT----TSCTTEEEECCTTCCCBCCTTCTTCEEEEC-TTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             hccCC----cccCceeEeecCCCccccccCCCCCeEEEe-cCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            87543    367889999877778899999999999998 5789999999999999998889999999999999999875

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-44  Score=327.09  Aligned_cols=232  Identities=23%  Similarity=0.361  Sum_probs=197.5

Q ss_pred             ccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEE
Q psy15052        131 SYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVV  209 (422)
Q Consensus       131 ~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~  209 (422)
                      |+++|   .+|.++||||+|+|++.+.++|+|+||+++||||||||+.+.. ...+.|..+..........  .+.+.+.
T Consensus         2 ri~gG---~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~   76 (240)
T d1mzaa_           2 EIIGG---KEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEAS--KQTLEIK   76 (240)
T ss_dssp             CCCCC---EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTT--CEEEEEE
T ss_pred             EEECC---EECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEECeEcccccCCcceeEEEEeecccCcCCcc--ceeEeee
Confidence            56666   7789999999999998877899999999999999999998743 3467788877766554442  6788999


Q ss_pred             EEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCC-CCCCCCCceEEEEeccChhh
Q psy15052        210 KKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSE-GGSLPPVLQKVTVPIVSNEK  288 (422)
Q Consensus       210 ~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~v~v~~~~~  288 (422)
                      +++.||.|+.....+|||||+|++++.++++++|||||..........+.+.|||.+.. .+..+..|+...+.+++.++
T Consensus        77 ~i~~h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~  156 (240)
T d1mzaa_          77 KFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKL  156 (240)
T ss_dssp             EEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHH
T ss_pred             eeeeeccccccccCcceEEEeecceeeeeeccccccccccccccceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHH
Confidence            99999999999889999999999999999999999999887667778899999998754 34556789999999999999


Q ss_pred             HHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecc-cccccc
Q psy15052        289 CRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS-KFVPWV  367 (422)
Q Consensus       289 C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~-~y~~WI  367 (422)
                      |+......+. ....+.++|++...+..+.|.|||||||+++     ++|+||+|+|..|+..+.|++||||+ +|++||
T Consensus       157 C~~~~~~~~~-~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~-----~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI  230 (240)
T d1mzaa_         157 CNSQSYYNGD-PFITKDMVCAGDAKGQKDSCKGDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWI  230 (240)
T ss_dssp             HTSTTTTTTT-TCCCTTEEEEECTTSCCCCCTTCTTCEEEET-----TEEEEEECSSCCSSCTTCCEEEEECCHHHHHHH
T ss_pred             hhhhhhccCC-cccccceEEeccCCCCccCccCCCCCeEEEC-----CEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHH
Confidence            9875543222 2366789999877778899999999999985     36999999999999889999999997 789999


Q ss_pred             cccCCC
Q psy15052        368 LDTGDS  373 (422)
Q Consensus       368 ~~~i~~  373 (422)
                      +++|+.
T Consensus       231 ~~~i~~  236 (240)
T d1mzaa_         231 KSNLVP  236 (240)
T ss_dssp             HHHTCC
T ss_pred             HHHccC
Confidence            999975

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-44  Score=325.70  Aligned_cols=223  Identities=26%  Similarity=0.392  Sum_probs=188.4

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|+++||||||+|+....++|+|+||+++||||||||+.+..   ..+.++..+......  ..+...+..++.||+|+
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~~hp~y~   79 (232)
T d1orfa_           5 NEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKR---SQVILGAHSITREEP--TKQIMLVKKEFPYPCYD   79 (232)
T ss_dssp             EECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCCTT---CEEEESCSBSSSCCT--TCEEECEEEEEECTTCC
T ss_pred             EECCCCCCCcEEEEEECCCEEEEEEEecCCEEEEChhhcCCCC---cceeeeeeecccccc--ccccceEEEEEeccccc
Confidence            6789999999999998888899999999999999999998643   233444444443332  25778899999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||+|++++.++++++|+|||.... ...+..+.++|||.+...+..+..|+.+.+.+++.++|+..+....
T Consensus        80 ~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  159 (232)
T d1orfa_          80 PATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNF  159 (232)
T ss_dssp             TTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTTT
T ss_pred             ccccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeeccccccCCcccCChhheEEEeecCCHHHHhhhhhccc
Confidence            999999999999999999999999999987654 4568899999999988877778899999999999999987654322


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecc-cccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS-KFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~-~y~~WI~~~i~  372 (422)
                       ...+.++++|++......+.|.||+||||+++.     +|+||+|||.  .|+..+.|++||||+ +|++||+++|+
T Consensus       160 -~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~~-----~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~  231 (232)
T d1orfa_         160 -NPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK  231 (232)
T ss_dssp             -TTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT-----EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             -CccccCceEEeccCCCCcccccccCCCeEEEcC-----EEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhC
Confidence             234788999999777788999999999999863     6999999984  477788899999997 79999999886

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=320.84  Aligned_cols=216  Identities=27%  Similarity=0.523  Sum_probs=186.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|++++|||+|+|+.++.++|+|+||+++||||||||+..    ...|++|..........  .+.+.+.++++||+|+
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~----~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~p~y~   78 (221)
T d1lo6a_           5 GPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKP----NLQVFLGKHNLRQRESS--QEQSSVVRAVIHPDYD   78 (221)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCT----TCEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC
T ss_pred             EECCCCCCCCEEEEEECCcEEEEEEEEeCCEEEECeecccc----ccceeeceeeecccCcc--ceeeeccccccCCCcc
Confidence            66889999999999988778899999999999999999974    35789998877655443  5788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                      .....+|||||+|++++.++++++|+|||... ...+..+.++|||..... ..+..|+...+.+++.++|++.+...  
T Consensus        79 ~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~-~~~~~~~~~~Gwg~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~--  154 (221)
T d1lo6a_          79 AASHDQDIMLLRLARPAKLSELIQPLPLERDC-SANTTSCHILGWGKTADG-DFPDTIQCAYIHLVSREECEHAYPGQ--  154 (221)
T ss_dssp             TTTCTTCCEEEEESSCCCCBTTBCCCCBCCCT-TCCCCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHHHHHHSTTT--
T ss_pred             cccccceeEEeecccccceeeeEEeccccccC-CcccceEEEEecccccCC-CCCccceEEEEEEecHHHHHHHcCCC--
Confidence            99999999999999999999999999998755 456889999999987653 45788999999999999999988542  


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                         ..++++|..........|.||+||||++++     +|+||+|+|. +|+..+.|++||||++|++||+++|+
T Consensus       155 ---~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~-----~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         155 ---ITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             ---CCTTEEEEECTTTCCBCCTTTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ---ccCCceeeeccccCCCCccCCCCCcEEECC-----EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence               456666666566778899999999999864     5999999986 58878889999999999999999875

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.7e-43  Score=318.73  Aligned_cols=217  Identities=29%  Similarity=0.455  Sum_probs=188.8

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .+|.++||||+|+|....    .++|+|+||+++||||||||+..    ...|++|.++.......  .+...|.++++|
T Consensus         5 ~~a~~ge~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTaAhC~~~----~~~v~~G~~~~~~~~~~--~~~~~v~~i~~~   78 (227)
T d1fi8a_           5 HEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGS----KIQVTLGAHNIKEQEKM--QQIIPVVKIIPH   78 (227)
T ss_dssp             EECCTTSSTTEEEEEEECTTC-CCEEEEEEEETTEEEECGGGCCS----EEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             EECCCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEecccccc----cceeeeeecccccCCCC--ceEEEEEEEEec
Confidence            678999999999997543    34799999999999999999864    46799999887665543  678899999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |.|+.....||||||+|++++.|+++++||||+.... ...+..+.+.|||........+..++...+.+++.+.|...+
T Consensus        79 ~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~c~~~~  158 (227)
T d1fi8a_          79 PAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYL  158 (227)
T ss_dssp             TTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCHHHHHHHT
T ss_pred             ccccCccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCCCCCceeeEEEEEEEEchhhhhhh
Confidence            9999999999999999999999999999999987764 456889999999998877777889999999999999999887


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ...    .....++|+.......+.|.||+||||+++     ++|+||+|+|..|+  +.|++||||+.|++||+++|+
T Consensus       159 ~~~----~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~-----~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~  226 (227)
T d1fi8a_         159 KNY----FDKANEICAGDPKIKRASFRGDSGGPLVCK-----KVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMK  226 (227)
T ss_dssp             TTT----CCTTTEEEESCTTSCCBCCTTCTTSEEEET-----TEEEEEEEEEETTC--CSCEEEEEGGGGHHHHHHHHC
T ss_pred             hcc----cccceeeeeeeccccCCCcCCCcCCEEEEC-----CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHc
Confidence            553    356678888777777889999999999985     47999999998885  569999999999999999886

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=328.29  Aligned_cols=234  Identities=30%  Similarity=0.480  Sum_probs=192.9

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC--
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK--  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~--  216 (422)
                      .+|..+||||+|+|.+...++|+|+||+++||||||||+.+.......+..+......  .....+.+.+.++..||.  
T Consensus         5 ~~~~~~e~Pw~v~I~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~h~~~~   82 (255)
T d1z8ga1           5 RDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQ--ASPHGLQLGVQAVVYHGGYL   82 (255)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBT--TCTTSEEECEEEEEEETTCG
T ss_pred             EECCCCCcCcEEEEEECCcEEEEEEEEeCCEEEECceecCCCCCccceeeEeeeeecc--cCCccEEEEEEEEEEEeeec
Confidence            6788999999999998888899999999999999999998643322223322222222  222368889999999998  


Q ss_pred             ----CCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        217 ----YNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       217 ----y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                          |+.....||||||||++++.++++++|+||+.... ...+..+.+.||+.....+.....++...+++++.+.|+.
T Consensus        83 ~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C~~  162 (255)
T d1z8ga1          83 PFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNG  162 (255)
T ss_dssp             GGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHTS
T ss_pred             cccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCCcccceeEEEEEEEeCHHHhhh
Confidence                55566789999999999999999999999987754 4468889999999887777778899999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeec---CCCcEEEeeEEeecccccCCCCCceeeeccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKG---KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~---~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      .+....   .+.+.++|+....+..+.|.||+||||++.+   ..++|+|+||+|||.+|+..+.|++||||+.|++||+
T Consensus       163 ~~~~~~---~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~WI~  239 (255)
T d1z8ga1         163 ADFYGN---QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIF  239 (255)
T ss_dssp             TTTTTT---CCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHH
T ss_pred             hhccCc---cccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHH
Confidence            654332   3677888887777788899999999999874   4578999999999999998899999999999999999


Q ss_pred             ccCCCCCCc
Q psy15052        369 DTGDSGGPL  377 (422)
Q Consensus       369 ~~i~~~~pl  377 (422)
                      ++|+..++-
T Consensus       240 ~~i~~~~~~  248 (255)
T d1z8ga1         240 QAIKTHSEA  248 (255)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHcCCC
Confidence            999766543

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=320.65  Aligned_cols=224  Identities=22%  Similarity=0.288  Sum_probs=187.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.. +|||||+|++++.++|+|+||+++||||||||+.+.+...+.|++|..+..........+.+.+.++..||+| 
T Consensus         5 ~~~~~-~~~w~vsi~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (234)
T d1si5h_           5 IPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG-   82 (234)
T ss_dssp             EECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSST-
T ss_pred             EeCCC-CcCeEEEEEECCcEEEEEEEEeCCEEEECcCccCCCCCccceEEEEeecccccccceeEEEEeeccccCCCcc-
Confidence            44544 5999999999988899999999999999999999877889999999988766655444677788888888875 


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCC-CCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                           ||||||||++|+.++++++|||||..... .....+.+.||+.... ...+..|+.+.+.+++.+.|...+... 
T Consensus        83 -----~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~-  155 (234)
T d1si5h_          83 -----SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGK-  155 (234)
T ss_dssp             -----TCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCC-SSCCCBCEEEEEEEECGGGTCC------
T ss_pred             -----cceEEEeeccCccccccccccccccccccCCcceeEEEeccccccc-ccccceeEEEEeeccchhHhhhhhccc-
Confidence                 79999999999999999999999987643 3466778888876543 345678999999999999998766432 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                        ..+.+.++|+....+..+.|.||+||||+++ .+++|+|+||+|+|..|+..+.|++||||+.|++||+++|+.-
T Consensus       156 --~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~~  229 (234)
T d1si5h_         156 --VTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (234)
T ss_dssp             ----CCTTEEEEECSSSCCBCCTTCTTCEEEEE-CSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             --cccCCccEEEccCCcCCCCCcCccccceEEe-cCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhcC
Confidence              2378899999877778899999999999998 6789999999999999988899999999999999999999754

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-43  Score=321.18  Aligned_cols=225  Identities=29%  Similarity=0.566  Sum_probs=190.4

Q ss_pred             CCCCCCCcCeEEEEEecCC-CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLG-RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~-~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.++||||+|+|.+... +.|+|+||+++||||||||+.+  ...+.|++|..+.......  .+...|+++++||.|
T Consensus         5 ~~~~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~--~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~~~   80 (240)
T d1autc_           5 KMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHPNY   80 (240)
T ss_dssp             EECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSS--CSCCEEEESCCBTTCCCTT--CEEEEEEEEEECTTC
T ss_pred             EECCCCCCCCEEEEEECCCCEEEEEEEEeCCEEEECceeccC--cccceeecccccccccccc--ceeeeeeccccceee
Confidence            6788999999999987654 4799999999999999999976  3557899998887655543  688999999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC-----CCCCCCeEEEEEecccCCCCC-----CCCCceEEEEeccChh
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD-----DLLIGENATVTGWGRLSEGGS-----LPPVLQKVTVPIVSNE  287 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~-----~~~~~~~~~v~GwG~~~~~~~-----~~~~L~~~~v~v~~~~  287 (422)
                      +.....||||||||++|+.++++|+|+|||...     ....+..+.+.|||.......     ....++...+++++.+
T Consensus        81 ~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
T d1autc_          81 SKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHN  160 (240)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHH
T ss_pred             eccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEeeh
Confidence            999999999999999999999999999998753     235688899999998664332     3456788889999999


Q ss_pred             hHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        288 KCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       288 ~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      .|...+...     .....+|........+.|.||+|+||+++ .+++|+|+||+|+|..|+..+.|++||||+.|++||
T Consensus       161 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~gd~G~pl~~~-~~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI  234 (240)
T d1autc_         161 ECSEVMSNM-----VSENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI  234 (240)
T ss_dssp             HHHHHCSSC-----CCTTEEEECCTTCCCBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHH
T ss_pred             hhhhhcccc-----cccceeeeccccccCCCcCCccCceeEEc-CCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHH
Confidence            998877542     45566676666677889999999999998 568999999999999998888999999999999999


Q ss_pred             cccCCC
Q psy15052        368 LDTGDS  373 (422)
Q Consensus       368 ~~~i~~  373 (422)
                      +++|+.
T Consensus       235 ~~~i~~  240 (240)
T d1autc_         235 HGHIRD  240 (240)
T ss_dssp             HHHHC-
T ss_pred             HHHhCC
Confidence            999863

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=2.3e-43  Score=319.74  Aligned_cols=217  Identities=29%  Similarity=0.525  Sum_probs=183.0

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++++++|||+|+|+. +.++|+||||+++||||||||+.+..  ...+..+  +......  ......+.+++.||.|.
T Consensus         5 ~~~~~~~~Pw~v~l~~-~~~~C~GtLIs~~~VLTAAhCv~~~~--~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~   77 (222)
T d1hj8a_           5 YECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYKSRV--EVRLGEH--NIKVTEG--SEQFISSSRVIRHPNYS   77 (222)
T ss_dssp             EECCTTSCTTEEEEES-SSEEEEEEEEETTEEEECGGGCCSSC--EEEESCS--BTTSCCS--CCEEEEEEEEEECTTCB
T ss_pred             EECCCCCCCeEEEEEC-CCEEEEEEEeeCCEEEeCceeccccc--Ccceeec--cccccCC--ccccccceEEEeccccc
Confidence            6788999999999964 46789999999999999999998632  2222222  2222111  24667788899999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGR  298 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~  298 (422)
                      .....+|||||||++|+.+++.++|||||... ...+..+.+.|||.+.........|+...+.+++.++|+..+..   
T Consensus        78 ~~~~~~diALl~l~~~v~~~~~~~picl~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~---  153 (222)
T d1hj8a_          78 SYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG---  153 (222)
T ss_dssp             TTTTBSCCEEEEESSCCCCSSSCCCCBCCSSC-CCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT---
T ss_pred             ccccCCcEEEEecccceeeeceeEEEECCCcC-CCCCceEEEEeccccccccccccccEEEEEEEeCHHHHhhhccc---
Confidence            98889999999999999999999999998755 45688899999999877777788899999999999999988754   


Q ss_pred             cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        299 YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       299 ~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                        .+.+.++|++...+..+.|.||+||||+++.     +|+||+|+|.+|+..+.|++||||+.|++||+++|++
T Consensus       154 --~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~-----~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         154 --MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             --CCCTTEEEESCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             --ccccceEEEccCCCCcccccCCcccEEEECC-----EEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence              3788999998777778899999999999853     5999999999999888999999999999999999864

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-43  Score=320.07  Aligned_cols=224  Identities=29%  Similarity=0.517  Sum_probs=188.8

Q ss_pred             CCCCCCCcCeEEEEEecC-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESL-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      .+|++++|||+|+|.... .++|+|+||+++||||||||+.+...  ..+...........  ...+.+.++++++||+|
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhCv~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~i~~h~~~   80 (233)
T d2p3ub1           5 QECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR--FKVRVGDRNTEQEE--GGEAVHEVEVVIKHNRF   80 (233)
T ss_dssp             EECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSS--CEEEESCSBTTSCC--SCCEEEEEEEEEECTTC
T ss_pred             EECCCCCCCcEEEEEecCCCeEEEEEEEeCCEEEECceecccccc--cccccccccccccC--CCceeecceeEEEeecc
Confidence            678999999999998765 45799999999999999999987443  33333332222222  23678899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCC----CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD----LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +.....+|||||+|++|+.++++++|+|||....    ......+.+.||+.....+.....++...+.+++.+.|...+
T Consensus        81 ~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  160 (233)
T d2p3ub1          81 TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS  160 (233)
T ss_dssp             CTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHHC
T ss_pred             cccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCccccccccccccccchhhhccc
Confidence            9999999999999999999999999999997642    345677899999988777777788999999999999999877


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ..     .+..+++|+.........|.||+||||+++ .+++|+|+||+|++..|+..+.|++||||++|++||+++|+
T Consensus       161 ~~-----~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~-~~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         161 SF-----IITQNMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             SS-----CCCTTEEEESCSSSSCBCCTTTTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             Cc-----eEeecceeeecccccCCCcCCCcccccEEe-cCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            54     267788898877778889999999999998 57899999999999999988899999999999999999885

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=324.95  Aligned_cols=226  Identities=26%  Similarity=0.498  Sum_probs=189.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-----CceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-----TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ..|.+++|||+|.|..  .+.|+|+||+++||||||||+....     ...+.|++|.++......   .+.+.|+++++
T Consensus         5 ~~~~~~~~Pw~v~i~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~---~~~~~v~~i~v   79 (240)
T d2qy0b1           5 QKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK---LGNHPIRRVSV   79 (240)
T ss_dssp             EECCTTSSTTEEEEES--SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHH---HCCCCEEEEEE
T ss_pred             EECCCCCcCCEEEECC--CceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeeccccccCC---cceEEEEEEEe
Confidence            5788999999999865  4579999999999999999997532     235789999877654332   35678999999


Q ss_pred             CCCCCCC---CCCCceEEEEECCCcccCCCeeeeecCCCCCC-CCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhH
Q psy15052        214 HPKYNFF---TYEYDLALVRLETPVEFAPNIVPICLPGSDDL-LIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKC  289 (422)
Q Consensus       214 Hp~y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C  289 (422)
                      ||+|+..   ...+|||||||++|+.++++++||||+..... ..+..+.+.|||....  ..+..++...+.+++.+.|
T Consensus        80 hp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~--~~~~~~~~~~~~~~~~~~C  157 (240)
T d2qy0b1          80 HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQAC  157 (240)
T ss_dssp             CTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSS--SCCSBCEEEEEEBCCHHHH
T ss_pred             ccccccccccccCCCceEEecCCccccccccceEEecccccccccCceeeecccccccc--cccccceEEEEEEcCHHHH
Confidence            9999864   35689999999999999999999999877643 3578899999997653  3467788999999999999


Q ss_pred             HHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecC-CCcEEEeeEEeecccccCCCCCceeeeccccccccc
Q psy15052        290 RSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK-DGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       290 ~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~-~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      +..+........+.+.++|+.......+.|.||||+||++.+. .++|+|+||+|+|.+|+.  .|++||||++|++||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~--~p~vft~v~~~~~WI~  235 (240)
T d2qy0b1         158 ENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIK  235 (240)
T ss_dssp             HHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHHH
T ss_pred             HHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCCC--CCeEEEEHHHHHHHHH
Confidence            9998777665567889999987777889999999999998754 458999999999999974  4899999999999999


Q ss_pred             ccCCC
Q psy15052        369 DTGDS  373 (422)
Q Consensus       369 ~~i~~  373 (422)
                      ++|+.
T Consensus       236 ~~i~~  240 (240)
T d2qy0b1         236 KEMEE  240 (240)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99873

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=4.7e-43  Score=317.21  Aligned_cols=216  Identities=29%  Similarity=0.486  Sum_probs=185.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCC-ceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLT-SQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.++||||+|+|+.++.+.|+|+||+++||||||||+..... ..+.+..+......     ..+...|+++++||+|
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~h~~y   79 (222)
T d1eq9a_           5 KDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSE-----SGDVYDVEDAVVNKNY   79 (222)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTTS-----CCEEEEEEEEEECTTC
T ss_pred             EECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECceeccccccccceeeecceecccc-----CcceeeeeeEEEeecc
Confidence            67889999999999988888999999999999999999987443 33444443332221     2578899999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      +.....+|||||+|++++.++++++|+||+..........+.++||+.+...+..+..++...+..++...|.+.+..  
T Consensus        80 ~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~--  157 (222)
T d1eq9a_          80 DDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR--  157 (222)
T ss_dssp             BTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSS--
T ss_pred             cccccccceehhhccCCcccccccccccccccccccccceeEEeeeeeecCCCCCCccceEEEEEEechHHhcccccc--
Confidence            999999999999999999999999999999887767788999999998888778889999999999999999876643  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                          +.+.++|++. .+..+.|.+|+||||+++     |+|+||+|++..|+ .+.|++||||+.|++||+++|+
T Consensus       158 ----~~~~~~c~~~-~~~~~~c~~d~G~pl~~~-----~~L~GI~s~~~~c~-~~~p~vyt~v~~y~~WI~~~i~  221 (222)
T d1eq9a_         158 ----VIDSHICTLT-KRGEGACHGDSGGPLVAN-----GAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             ----CCTTEEEECC-CTTCBCCTTCTTCEEEET-----TEEEEEEEECSTTT-SSSCEEEEEGGGGHHHHHHTSC
T ss_pred             ----ccCcceEecc-CCCCCccccCCcCCEEEc-----CEEEEEEEECCCCC-CCCCcEEEEHHHHHHHHHHHhc
Confidence                6778999984 446789999999999985     46999999999996 5679999999999999999986

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-43  Score=321.44  Aligned_cols=217  Identities=31%  Similarity=0.579  Sum_probs=180.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ..+.++||||+|+|+. ..++|+|+||+++||||||||+......  .+  ..........  ......+.++++||+|+
T Consensus         5 ~~~~~~~~Pw~v~l~~-~~~~C~GtLIs~~~VLTaAhCv~~~~~~--~~--~~~~~~~~~~--~~~~~~~~~~~~hp~y~   77 (223)
T d1j16a_           5 YTCQENSVPYQVSLNS-GYHFCGGSLINDQWVVSAAHCYKSRIQV--RL--GEHNINVLEG--NEQFVNAAKIIKHPNFD   77 (223)
T ss_dssp             EECCTTSSTTEEEEES-SSEEEEEEEEETTEEEECGGGCCSSCEE--EE--SCSBTTSCCS--CCEEEEEEEEEECTTCB
T ss_pred             EECCCCCCCcEEEEeC-CCEEEEEEEEcCCEEEeCHHHCCCcCCc--ee--eeeeeccccc--cceeeeeeeEEecCCCC
Confidence            6788999999999964 4678999999999999999999863321  11  1111111111  25788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||+|++++.++++++|||||... ...+..+.++|||.+...+ ..+..|+...+.+++.++|+..+..  
T Consensus        78 ~~~~~~diAll~L~~~v~~~~~~~picL~~~~-~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  154 (223)
T d1j16a_          78 RETYNNDIMLIKLSSPVKLNARVATVALPSSC-APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSF--  154 (223)
T ss_dssp             TTTTBTCCEEEEESSCCCCBTTBCCCBCCSSC-CCTTCEEEEEESSCCCSSSCCCCSBCEEEEEEEECHHHHHSSSSC--
T ss_pred             ccccceeEEEEEecCccccceeEEEEecCCcC-CCCCCEEEEEeeeeeeCCCccCcceeeEEEEEEEEhhHhhccccc--
Confidence            98889999999999999999999999999754 4678899999999876554 4567899999999999999976543  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                         .+.++++|++...+..+.|.||+|+||+++.     +|+||+|++..|+..+.|++||||+.|++||+++|++
T Consensus       155 ---~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~~-----~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~~  222 (223)
T d1j16a_         155 ---IITDNMVCVGFLEGGKDACQGDSGGPVVCNG-----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAA  222 (223)
T ss_dssp             ---CCCTTEEEESCTTCSCBCCTTCTTCEEEETT-----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ---eeCCCceEEecCCCCCcccCCccCCcEEEee-----EEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHhc
Confidence               3778899998777788899999999999853     6999999999999888999999999999999999865

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=318.61  Aligned_cols=226  Identities=29%  Similarity=0.521  Sum_probs=186.1

Q ss_pred             CCCCCCCcCeEEEEEecCCC---CceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESLGR---PVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~---~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      .+|.++||||+|+|+.....   .|+|+||+++||||||||+.....  ..+.+.++......     ..+.++|+++++
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~   79 (243)
T d2fpza1           5 QEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYY-----QDQLLPVSRIIV   79 (243)
T ss_dssp             EECCTTSCTTEEEEEECSSSCEEEEEEEEEETTEEEECHHHHCSBCCCGGGEEEECCCSBTTT-----TCCCEEEEEEEE
T ss_pred             EECCCCCCCcEEEEEECCCcccEEEEEEEEeCCEEEECceeccCCCCcceeEEEEeeeccccc-----ccEEEeeeeeec
Confidence            67889999999999876533   599999999999999999977433  34444444433322     257889999999


Q ss_pred             CCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCC--CCCCCceEEEEeccChhhHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGG--SLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~v~v~~~~~C~  290 (422)
                      ||+|+.....||||||||++|+.++++++|+|||.... ...+....+.+||....+.  ..+..|+...+.+++.+.|+
T Consensus        80 hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~  159 (243)
T d2fpza1          80 HPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICD  159 (243)
T ss_dssp             CTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHH
T ss_pred             cccccccccccchhhhcccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhh
Confidence            99999999999999999999999999999999987664 4467889999999876554  34567899999999999999


Q ss_pred             HHHhhcCC----cccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccc
Q psy15052        291 SMFLRAGR----YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPW  366 (422)
Q Consensus       291 ~~~~~~~~----~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~W  366 (422)
                      ..+.....    ...+...++|.+  ......|.||+||||++. .+++|+|+||+|++..|+..+.|++||||++|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gdsGgpl~~~-~~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~W  236 (243)
T d2fpza1         160 AKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDW  236 (243)
T ss_dssp             HHHHTTBCSCTTSCSSCTTEEEEC--CSSSBCCTTCTTCEEEEE-ETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHH
T ss_pred             hhhhcccccCCccceeeeeeEecC--CCCCCCccCCCCCeEEEe-eCCEEEEEEEEEECCCCCCCCCCEEEEEHHHHHHH
Confidence            98864322    123455677765  456789999999999988 57899999999999999888999999999999999


Q ss_pred             ccccCC
Q psy15052        367 VLDTGD  372 (422)
Q Consensus       367 I~~~i~  372 (422)
                      |+++|+
T Consensus       237 I~~~i~  242 (243)
T d2fpza1         237 IHHYVP  242 (243)
T ss_dssp             HTTTSC
T ss_pred             HHHHhC
Confidence            999986

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-42  Score=319.53  Aligned_cols=233  Identities=26%  Similarity=0.424  Sum_probs=189.1

Q ss_pred             ccccccccCCCCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcE
Q psy15052        129 MLSYYSHKDISSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQ  204 (422)
Q Consensus       129 ~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~  204 (422)
                      ..++.+|   .+|.+++|||+|+|.....    +.|+|+||+++||||||||+.........+..+......   ....+
T Consensus        11 ~~ri~gG---~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~---~~~~~   84 (251)
T d1pytd_          11 SARVVGG---EDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVED---EAGSL   84 (251)
T ss_dssp             SSSCCSS---CCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTCCEEEEESCSBTTCSC---CSSCE
T ss_pred             CCeEECC---EECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeecccccccceeeeeeeeeeccc---CCCce
Confidence            3345555   7789999999999975432    369999999999999999998744333322222211111   12357


Q ss_pred             EEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEec
Q psy15052        205 ERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPI  283 (422)
Q Consensus       205 ~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v  283 (422)
                      ...|.++++||+|+.....||||||+|.+|+.|++.++||||+.... ...+..+.+.||+.+...+.....++...+.+
T Consensus        85 ~~~v~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  164 (251)
T d1pytd_          85 YVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPV  164 (251)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEEC
T ss_pred             EEeEEEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCCcccceeceeeccc
Confidence            89999999999999999999999999999999999999999998764 44678899999999888777778888899999


Q ss_pred             cChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecc
Q psy15052        284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRIS  361 (422)
Q Consensus       284 ~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~  361 (422)
                      ++.++|.+.+....   .....++|++. .+..+.|.||+||||+++ .+++|+|+||+|++.  .|+..+.|++|+||+
T Consensus       165 ~~~~~C~~~~~~~~---~~~~~~~c~~~-~~~~~~c~gd~G~Pl~~~-~~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~  239 (251)
T d1pytd_         165 VDYATCSQRDWWGT---TVKETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVS  239 (251)
T ss_dssp             BCHHHHTSTTTTTT---TCCTTEEEECC-SCSSCCCCSCTTCEEEEE-SSSSEEEEEEEEECCSSCTTBTTBCEEEEEGG
T ss_pred             cCHHHHhhhhcccc---cccCceEEecc-CCCCccccCCCCCceEEe-eCCEEEEEEEEEECCCCCCCCCCCCeEEEEHH
Confidence            99999987654332   36778999974 445789999999999998 578999999999975  477778999999999


Q ss_pred             cccccccccCC
Q psy15052        362 KFVPWVLDTGD  372 (422)
Q Consensus       362 ~y~~WI~~~i~  372 (422)
                      .|++||+++|+
T Consensus       240 ~y~~WI~~~i~  250 (251)
T d1pytd_         240 AYIDWINQKLQ  250 (251)
T ss_dssp             GGHHHHHHHTT
T ss_pred             HhHHHHHHhcc
Confidence            99999999986

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-43  Score=319.66  Aligned_cols=227  Identities=28%  Similarity=0.546  Sum_probs=187.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCC--CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNS--LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ..|+++||||+|+|+  .++.|+||||+++||||||||+.+  .....+.|.+|..+.....    .+.+.|.++++||+
T Consensus         5 ~~~~~g~~Pw~v~i~--~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~v~~~~~~~~~~~----~~~~~v~~i~~hp~   78 (242)
T d1q3xa1           5 QKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPH----YTQAWSEAVFIHEG   78 (242)
T ss_dssp             EECCTTSSTTEEEEC--SSSSEEEEEETTTEEEECHHHHHHHHTTTCCCEEEESCSBTTCSC----SEEEEEEEEEECTT
T ss_pred             EECCCCCcCcEEEEc--CCCEEEEEEEcCCEEEEChhhccCCCCCcceEEEEeeeeeecccc----ccccceeeeEEeec
Confidence            678899999999996  357899999999999999999965  3345677888876544332    47789999999999


Q ss_pred             CCCCC-CCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        217 YNFFT-YEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       217 y~~~~-~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                      |+... ..||||||||++|+.|++++.|+|++....   ...+......||+....+ ..+..|+.+.+.+++.+.|++.
T Consensus        79 y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~  157 (242)
T d1q3xa1          79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAA  157 (242)
T ss_dssp             CCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHHHHHH
T ss_pred             cccccccCccccccccCCCccccccEEEEeccccccccccccceeeeeeeccccccC-ccccceeeeeccccCHHHHHhh
Confidence            98765 579999999999999999999999987643   234677788888865443 4577899999999999999998


Q ss_pred             HhhcCC-cccccCceEEEeecCCCCCCCcCCCCCCceee-cCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccc
Q psy15052        293 FLRAGR-YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVK-GKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       293 ~~~~~~-~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~-~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      +..... ...+.+.++|++...+..+.|.||+||||++. ...++|+|+||+|+|. .|+..+.|++||||+.|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~  237 (242)
T d1q3xa1         158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN  237 (242)
T ss_dssp             TSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            865432 23467788999877778899999999999986 3567999999999985 58888899999999999999999


Q ss_pred             cCC
Q psy15052        370 TGD  372 (422)
Q Consensus       370 ~i~  372 (422)
                      +|+
T Consensus       238 ~v~  240 (242)
T d1q3xa1         238 IIS  240 (242)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=1.5e-42  Score=315.48  Aligned_cols=221  Identities=28%  Similarity=0.520  Sum_probs=186.9

Q ss_pred             CCCCCCCcCeEEEEEecC-CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESL-GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      .+|.++||||+|+|.+.. .+.|+|+||+++||||||||+.........+..+......    ...+.+.+..++.||.|
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   80 (228)
T d1fxya_           5 YNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEE----GGEAVHEVEVVIKHNRF   80 (228)
T ss_dssp             EECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSCTTTCC----CCEEEEEEEEEEECTTC
T ss_pred             EECCCCCCCcEEEEEEcCCCeEEEEEEeeCCEEEECceeeecccccccccccccccccC----Ccceeeeeeccceeeee
Confidence            678999999999998765 4579999999999999999998765555555544332221    12567788899999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      ......+||||++|++++.++++++|||||.... ..+..+.++|||.+.... ..+..|++..+.+++.++|+..+.. 
T Consensus        81 ~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~-~~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-  158 (228)
T d1fxya_          81 TKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG-  158 (228)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-
T ss_pred             eccccccceeehhccccccccccccccccccccc-ccccEEEEEecccccCCCCCCCchhEEEEEEEeCHHHHhhhcCC-
Confidence            9989999999999999999999999999997764 457889999999876553 4567899999999999999987754 


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                          .+.+.++|+.......+.|.||+||||+++     |+|+||+|++..|+..+.|.+||||++|++||+++|+++
T Consensus       159 ----~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~-----~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~~~  227 (228)
T d1fxya_         159 ----KITSNMFCVGFLEGGKDSCQGDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             ----TCCTTEEEESCTTCSCBCCTTCTTCEEEET-----TEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             ----cccceeeEeecCCCCcccccCccCccEEEe-----CEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHhc
Confidence                367889999877778899999999999986     369999999999988889999999999999999999765

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-42  Score=319.09  Aligned_cols=233  Identities=29%  Similarity=0.504  Sum_probs=194.2

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCC-CceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLL-TSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|++++|||+|+|+..+.+.|+|+||+++||||||||+.... ...+.+.++..+.......  .+...+..++.|+.|
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   82 (254)
T d2bz6h1           5 KVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGD--EQSRRVAQVIIPSTY   82 (254)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSC--CEEEEEEEEEEETTC
T ss_pred             EECCCCCCCcEEEEEECCCEEEEEEEeCCCEEEECcccccCCCCcccceeeccceeecccccc--ceeeeeeeeeecccc
Confidence            6789999999999998877889999999999999999998744 4567888888777654443  577889999999999


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCC----CCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSD----DLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~----~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      +.....+|||||||++|+.++++++|+|||...    .......+.+.|||.+..........+.....+...+.+....
T Consensus        83 ~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (254)
T d2bz6h1          83 VPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQS  162 (254)
T ss_dssp             CTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHHS
T ss_pred             cccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeeeecccchhhhhhhh
Confidence            999999999999999999999999999998753    2345778999999998877766666676777777666655444


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ............++|.....+....|.||+||||++. .+++|+|+||+||+..|+..+.|++||||+.|++||+++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~-~~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~~  241 (254)
T d2bz6h1         163 RKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS  241 (254)
T ss_dssp             CCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEE-ETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTS
T ss_pred             hcccccccccccceeeeccCCCcccccCccccceEEc-cCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence            3333333466677777766777899999999999998 578999999999999999889999999999999999999987


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      .
T Consensus       242 ~  242 (254)
T d2bz6h1         242 E  242 (254)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-42  Score=311.60  Aligned_cols=216  Identities=27%  Similarity=0.465  Sum_probs=186.6

Q ss_pred             CCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      .+|+++||||+|+|+...   .++|+|+||+++||||||||+.    +...|.+|..........  .+...|.+++.||
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~~~~C~GtlI~~~~VLTaAhC~~----~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~   78 (224)
T d1t32a1           5 RESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWG----SNINVTLGAHNIQRRENT--QQHITARRAIRHP   78 (224)
T ss_dssp             EECCTTSSTTEEEEEESSSTTSCEEEEEEEETTEEEECGGGCC----SCEEEEESCSBTTSCCTT--CEEEEEEEEEECT
T ss_pred             EECCCCCCCCEEEEEEEcCCCCEEEEEEEEcCCEEEEeEEccc----ccccceeeeeeeeccccc--eeeecceeEEEee
Confidence            678899999999998543   4579999999999999999986    457889998877665543  5788999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....+||||++|+.++.++++++|+|||.... ...+..+...|||..... .....|+++.+.+++.++|++.+.
T Consensus        79 ~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~  157 (224)
T d1t32a1          79 QYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMR-RGTDTLREVQLRVQRDRQCLRIFG  157 (224)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSSS-CCCSBCEEEEEEBCCHHHHHHHST
T ss_pred             cccccccccceeEEeeccccccCcccCccccccccccCCCCCEEEEecccccccC-CCcceeeeeeeeecCHHHHHhhcC
Confidence            999999999999999999999999999999998764 446788999999976543 446789999999999999999875


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      .     .+.+.++|+....+..+.|.||+||||++++     +|+||+|+|..|+.  .|++||||+.|++||+++|++
T Consensus       158 ~-----~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~-----~l~Gi~S~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  224 (224)
T d1t32a1         158 S-----YDPRRQICVGDRRERKAAFKGDSGGPLLCNN-----VAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             T-----CCTTTEEEECCTTSSCBCCTTCTTCEEEETT-----EEEEEEEECCTTCC--SCEEEEEGGGSHHHHHHHHCC
T ss_pred             c-----ccccccceeecccccccccccCcCCeEEEcC-----EEEEEEEEcCCCCC--CCcEEEEHHHhHHHHHHHHcC
Confidence            4     3678899998777788999999999999853     69999999988864  499999999999999999875

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=316.61  Aligned_cols=224  Identities=33%  Similarity=0.574  Sum_probs=188.1

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.+++|||+|+|+....+.|+|+||+++||||||||+.......+  ............  ....+.+.++.+||+|+
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~C~GtLI~~~~VLTaAhCv~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   80 (235)
T d1rfna_           5 EDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITV--VAGEHNIEETEH--TEQKRNVIRIIPHHNYN   80 (235)
T ss_dssp             EECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTCCCEE--EESCSBSSSCCS--CCEEEEEEEEEECTTCB
T ss_pred             EECCCCCcCCEEEEecCCCEEEEEEEeeCCEEEEChhhcCCCCceEE--EEeecccccCCC--CcceeeeeEEeeccCCC
Confidence            66889999999999988888999999999999999999987544333  333333332222  25778899999999998


Q ss_pred             CC--CCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        219 FF--TYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       219 ~~--~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      ..  ...+|||||||++|+.++..+.|+|||....   ...+..+.+.||+...........|+++.+.+++.+.|...+
T Consensus        81 ~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~~  160 (235)
T d1rfna_          81 AAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST  160 (235)
T ss_dssp             TTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHHC
T ss_pred             CCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEEeccccccccccccCcceEEEEeccccccccccc
Confidence            64  4569999999999999999999999987542   235778999999988877777888999999999999998776


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ...     +.+..+|+....+..+.|.||+||||+++ .+++|+|+||+|++..|+..+.|++||||++|++||+++|+
T Consensus       161 ~~~-----~~~~~~~~~~~~~~~~~~~gdsGgpl~~~-~~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         161 KFT-----IYNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             SSC-----CCTTEEEESCSSCSCBCCTTCTTCEEEEE-SSSCEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             Cce-----ecCCeeEeecCCCCccccCCCCCceeEEe-cCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            432     56677787767777899999999999998 67899999999999999988999999999999999999986

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-42  Score=310.86  Aligned_cols=218  Identities=32%  Similarity=0.518  Sum_probs=186.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|..++|||+|+|+ .+.++|+|+||+++||||||||+.+.    ..+++|..+......  ..+...+..+++||.|+
T Consensus         5 ~~a~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhC~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   77 (223)
T d1hj9a_           5 YTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSG----IQVRLGEDNINVVEG--NEQFISASKSIVHPSYN   77 (223)
T ss_dssp             EECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSS----CEEEESCSSTTSCCS--CCEEEEEEEEEECTTCC
T ss_pred             EECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCeeECCCc----Ccceecccccccccc--eeeeeceeeEEeccccc
Confidence            578899999999996 44667999999999999999999752    345677766554443  26888999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||+|++++.+++.++|+||+... ......+.+.||+.+... ...+..|+...+.+++.++|++.+..  
T Consensus        78 ~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  154 (223)
T d1hj9a_          78 SNTLNNDIMLIKLKSAASLNSRVASISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--  154 (223)
T ss_dssp             TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEECCCHHHHHHHSTT--
T ss_pred             cccccchhhhhhcccceeeeeeeecccccccc-ccccceEEEEeeccccCCCCCCCccceEEEEeecCHHHHHHHhCC--
Confidence            99999999999999999999999999998765 345778999999976544 34467899999999999999988754  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                         .+.+.++|+....+..+.|.||+|+||+++     |+|+||+|++..|+..+.|++||||.+|++||+++|+++
T Consensus       155 ---~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~-----~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T d1hj9a_         155 ---QITSNMFCAYGLEGKGDSCQGDSGGPVVCS-----GKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             ---TCCTTEEECCCCCCCCCCCTTCTTCEEEET-----TEEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHTTC
T ss_pred             ---cccccceEEeecCCCcccccCCCCceeEEe-----CEEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence               378889999877778889999999999986     369999999999988899999999999999999999864

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=3.3e-42  Score=312.31  Aligned_cols=217  Identities=34%  Similarity=0.526  Sum_probs=184.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.+++|||+|+|...+.++|+|+||+++||||||||+.........+.++.......     .+.+.+..++.||+|.
T Consensus         5 ~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~h~~~~   79 (224)
T d1gdna_           5 TSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSG-----GITSSLSSVRVHPSYS   79 (224)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSSSS-----SEEEEEEEEEECTTCB
T ss_pred             EECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECcccceeccccccceeeccccccCC-----cceEEEEEEEeeeccc
Confidence            67889999999999988778899999999999999999988766777777776554332     4677889999999887


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhc
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRA  296 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~  296 (422)
                      ..  .+|||||||++|+.+++.+.|+|++.... ...+..+.++|||.+..+. ..+..|+...+.+++.++|+..+...
T Consensus        80 ~~--~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~~~  157 (224)
T d1gdna_          80 GN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS  157 (224)
T ss_dssp             TT--BSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTT
T ss_pred             cc--cceeEEEeeccccccccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccccC
Confidence            54  69999999999999999999999987654 4568899999999876543 34577999999999999999887543


Q ss_pred             CCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        297 GRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       297 ~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                          .+.+.++|+.......+.|.+||||||++.    +|+|+||+|+|..|+..+.|+|||||++|++||++.
T Consensus       158 ----~~~~~~~~~~~~~~~~~~c~~dsG~pl~~~----~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         158 ----AITNQMFCAGVSSGGKDSCQGDSGGPIVDS----SNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             ----TSCTTEEEECCTTCCCBCCTTCTTCEEECT----TCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             ----ccccceeeeecCCCCccccccccCCceEec----CCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence                367788888777777889999999999853    468999999999999889999999999999999864

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-42  Score=309.93  Aligned_cols=216  Identities=30%  Similarity=0.454  Sum_probs=184.2

Q ss_pred             CCCCCCCcCeEEEEEecCC---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESLG---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      .+|.++||||+|+|.....   ++|+|+||+++||||||||+..    ...+++|..........  .+.+.|+++++||
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~----~~~~~~~~~~~~~~~~~--~~~~~V~~i~~hp   78 (224)
T d1eufa_           5 HEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGAHNIMERERT--QQVIPVRRPIPHP   78 (224)
T ss_dssp             EECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE----EEEEEESCSBTTSCCTT--CEEEEEEEEEECT
T ss_pred             EECCCCCCCCEEEEEEEcCCCcEEEEEEEEcCCEEEeeceeccc----ccceeeeeeeecccCCC--cEEEEEEEEEECC
Confidence            6689999999999985432   4699999999999999999863    45677887776655443  6889999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      +|+.....||||||||++|+.|++.+.|+|++.... ...+..+.+.|||.+.........++...+.+++.++|+..+.
T Consensus        79 ~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  158 (224)
T d1eufa_          79 DYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFK  158 (224)
T ss_dssp             TCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTCT
T ss_pred             ccccccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEEecccceeccccccccceeeeeccCCHHHHHHHhc
Confidence            999999999999999999999999999999987753 4567889999999988878888899999999999999998765


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ..     ....++|..........|.+|+||||++++     +|+||+|+|.+|+  +.|.+||||+.|++||+++|+
T Consensus       159 ~~-----~~~~~~~~~~~~~~~~~c~~dsGgpl~~~~-----~l~Gi~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         159 NY-----IPFTQICAGDPSKRKNSFSGDSGGPLVCNG-----VAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             TC-----CTTTEEEESCTTSCCBCCTTCTTCEEEETT-----EEEEEEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             cc-----cccceeeeeccccccccccCCCCCeEEEcC-----EEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            42     445566665556678899999999999853     6999999998885  569999999999999999986

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=2.1e-42  Score=314.24  Aligned_cols=218  Identities=27%  Similarity=0.446  Sum_probs=184.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.++||||+|+|+.++.++|+|+||+++||||||||+..  .....+++|..........  .+...|.++++||+|+
T Consensus         5 ~~a~~~~~Pw~V~i~~~~~~~C~GtLIs~~~VLTaAhCv~~--~~~~~~~~g~~~~~~~~~~--~~~~~v~~i~~~~~y~   80 (226)
T d1azza_           5 VEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNIREDEAT--QVTIQSTDFTVHENYN   80 (226)
T ss_dssp             EECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTT--CSCEEEEESCSBSSSCCTT--CEEEEECCEEECTTCB
T ss_pred             EECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEEChhhccC--CcceEEEeccceeccCCcc--eEEEEeeeeeeccccc
Confidence            67899999999999988788899999999999999999976  3556778888877655443  5788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||+|++++.++++++|+||+... ......+.++|||.+.... .....|++..+.+++.++|+..+..  
T Consensus        81 ~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~-~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~--  157 (226)
T d1azza_          81 SFVISNDIAVIRLPVPVTLTAAIATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI--  157 (226)
T ss_dssp             TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSC-CCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSC--
T ss_pred             cccccchhhhhhcCCccceeeccccccccccc-cccccceeeecccccCCCcCccccEeEEEEEEEEeHHHhhhhhCc--
Confidence            99999999999999999999999999998765 3557889999999876543 4457899999999999999998854  


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccccc-CCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA-EANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~-~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                          ..+.++|.. .....+.|.||+||||+++     |+|+||+|++..|+ ..+.|++||||+.|++||+++|+.
T Consensus       158 ----~~~~~~~~~-~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         158 ----VTDGNICID-STGGKGTCNGDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             ----CCTTEEEEC-CTTTCBCCTTCTTCEEEET-----TEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             ----ccccceecc-ccCCCccccCCcCCCEEEc-----CEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence                334444443 2456789999999999875     47999999998865 567899999999999999999875

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-42  Score=310.49  Aligned_cols=221  Identities=23%  Similarity=0.409  Sum_probs=188.8

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.++||||+|+|+..+.++|+|+||+++||||||||+.+.....+.+..+..+.......  .+...|.++++||.|+
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~--~~~~~v~~i~~~~~y~   82 (228)
T d1bioa_           5 REAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPS--KRLYDVLRAVPHPDSQ   82 (228)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGGGCSSSCEEEEESCSBSSSCCTT--CEEEEEEEEEECTTCC
T ss_pred             EECCCCCCCcEEEEEECCcEEEEEEEEeCCEEEECceeeeccccceeeeeccccccccCCcc--eeeccceeeeeeeccc
Confidence            56889999999999988888999999999999999999998777788888777765544432  6788999999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||+|++|+.+++++.|+|||.... ...+..+.+.|||.+...+..+..++...+.+++.+.|...+... 
T Consensus        83 ~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-  161 (228)
T d1bioa_          83 PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD-  161 (228)
T ss_dssp             TTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTCCCCSBCEEEEEEEECHHHHHSTTTTT-
T ss_pred             CCCcccceehhhccccceeeeEEeeecccccccccccCceEEEecceeecCCCCCCCcceEEEEEEeCHHHHhhhhccc-
Confidence            999999999999999999999999999987654 456888999999998888888889999999999999998766432 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTG  371 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i  371 (422)
                         .......|.. .....+.|.||+||||+++     |+|+||+|+|.. |+..+.|++||||+.|++||+++|
T Consensus       162 ---~~~~~~~~~~-~~~~~~~~~gdsG~Pl~~~-----~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i  227 (228)
T d1bioa_         162 ---GAITERLMCA-ESNRRDSCKGDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL  227 (228)
T ss_dssp             ---TCCCTTEEEE-CCSSCBCCTTTTTCEEEET-----TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred             ---ccccccceee-cccCCCcccCCcCccEEEc-----CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence               2344456655 3556789999999999985     479999999854 877888999999999999999876

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-42  Score=311.05  Aligned_cols=216  Identities=27%  Similarity=0.515  Sum_probs=176.1

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC-
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY-  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y-  217 (422)
                      ..|.+++|||+|+|+..+.++|+||||+++||||||||+....    .+.............  .....+..+..||.| 
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   78 (225)
T d1npma_           5 RECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKY----SVRLGDHSLQSRDQP--EQEIQVAQSIQHPCYN   78 (225)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSC----EEEESCSBTTC--CC--CEEECEEEEEECTTCC
T ss_pred             EECCCCCCCCEEEEEECCcEEEEEEEEcCCEEEEchHhCcccc----ccccccccccccCCC--cceeeeeeeEEEEeee
Confidence            6688999999999998877889999999999999999997632    233333333332222  456777888887755 


Q ss_pred             --CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHHHHh
Q psy15052        218 --NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       218 --~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                        +.....||||||||++|+.++++++|+|||.... .....++++|||.+... ...+..|+...+.+++.+.|++.+.
T Consensus        79 ~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  157 (225)
T d1npma_          79 NSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP  157 (225)
T ss_dssp             SSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHST
T ss_pred             ccCcccchhhhhhhhccccccccccccccccccccc-cCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHHhhhcc
Confidence              4566789999999999999999999999987764 45778999999987543 3456789999999999999998875


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccccccccCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      .     .+.+.++|+... ...+.|.||+||||+++     |+|+||+|+|.. |+..+.|++||||++|++||+++|+
T Consensus       158 ~-----~~~~~~~C~~~~-~~~~~c~gd~G~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         158 G-----KITEGMVCAGSS-NGADTCQGDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             T-----TCCTTEEEEECT-TCCBCCTTCTTCEEEET-----TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             C-----CcCCCEEEecCC-CCCccccCCCCceEEEc-----cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            4     378899999854 45789999999999985     479999999865 8777889999999999999999874

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-42  Score=310.57  Aligned_cols=218  Identities=21%  Similarity=0.364  Sum_probs=184.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.++||||+|+|+.++.++|+|+||+++||||||||+.+.......+.++..+.......  .....+..++.|+.|+
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   82 (225)
T d1a7sa_           5 RKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQ--SRQTFSISSMSENGYD   82 (225)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTT--TCEEEEEEEEECSSCB
T ss_pred             EECCCCCCCcEEEEEECCcEEEEEEEEcCCEEEECeeeeeeccccceeeEEeeeeccccccc--ccceeeeeeeeeeecc
Confidence            67889999999999988778899999999999999999998777788888888776655443  4567788899999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....||||||||++|+.+.++++|+||+.... ...+..+.++|||.+.........++...+.+++.+.|..      
T Consensus        83 ~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~------  156 (225)
T d1a7sa_          83 PQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP------  156 (225)
T ss_dssp             TTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT------
T ss_pred             ccccccccchhhcCCcccccccceeEEeeccccccCCCceeEeccccccccccccccceeEEEEEEeehhhccc------
Confidence            999999999999999999999999999986654 4467899999999988777778899999999999999953      


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCCCCCc
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDSGGPL  377 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~pl  377 (422)
                             ...|++......+.|.||+||||+++     |+|+||.|++.+|.. ..|++||||++|++||+++|++.+|.
T Consensus       157 -------~~~~~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~~~~~~  223 (225)
T d1a7sa_         157 -------NNVCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLNNPGPG  223 (225)
T ss_dssp             -------TEEEEECSSSSCBCCTTCTTCEEEET-----TEEEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHHSCSCC
T ss_pred             -------ccceeeecccccccccCCCCCCEEEe-----CEEEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHCCCCCC
Confidence                   24566656677889999999999985     469999999987553 45999999999999999999988775

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-41  Score=310.91  Aligned_cols=227  Identities=27%  Similarity=0.462  Sum_probs=187.4

Q ss_pred             CCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .+++++||||+|.|.....    ..|+|+||+++||||||||+....  ...|.++.........  ..+.+.|+++++|
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~v~~~~~~~~~~~~--~~~~~~v~~~~~~   80 (241)
T d1brup_           5 EDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSR--TYRVVLGRHSLSTNEP--GSLAVKVSKLVVH   80 (241)
T ss_dssp             EECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTS--CEEEEESCSBSSSCCT--TCEEEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEcCCCcceEEeEEEEEeCCEEEECeEeeeccc--ccceeeeccceeccCC--CccccceeeeEEE
Confidence            6688999999999986543    369999999999999999998743  4455666555444333  2578899999999


Q ss_pred             CCCCCCCCC--CceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYE--YDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~--nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |.|+.....  +|||||||+.++.++..++|+|++.... ...+..+.+.|||........+..++.+.+.+++.++|++
T Consensus        81 ~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~  160 (241)
T d1brup_          81 QDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSK  160 (241)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTS
T ss_pred             eeeeeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCCcCCCcceEEEEEEeCHHHhCc
Confidence            999876544  6799999999999999999999987764 4468889999999987777777889999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc--ccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~--C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+....   .....++|+. ..+..+.|.||+||||++++.+++|+|+||+|+|..  |+..+.|++||||++|++||++
T Consensus       161 ~~~~~~---~~~~~~~~~~-~~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~  236 (241)
T d1brup_         161 PGWWGS---TVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS  236 (241)
T ss_dssp             TTTTGG---GCCTTEEEEC-CSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             cccccc---cccccceeec-CCCCccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            654321   3566677776 455678999999999999888899999999999865  5677889999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      +|++
T Consensus       237 ~i~~  240 (241)
T d1brup_         237 VIAN  240 (241)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9864

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=315.27  Aligned_cols=218  Identities=26%  Similarity=0.432  Sum_probs=185.1

Q ss_pred             CCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      .+|.++||||||+|....   .+.|+|+||+++||||||||+.    ....|++|..........  .+.+.|.+++.||
T Consensus         5 ~~a~~~~~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhC~~----~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~   78 (227)
T d1fq3a_           5 HEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWG----SSINVTLGAHNIKEQEPT--QQFIPVKRPIPHP   78 (227)
T ss_dssp             BCCCTTSCTTEEECCEEETTEEECCEEEEEETTEEEECGGGCC----SEEEEEESCSBTTTTCTT--CEEEEEEEECCCT
T ss_pred             EECCCCCCCCEEEEEEEcCCCcEEEEEEEEeCCEEEeCEeecc----ccccceeccccccccccc--cEEEEEEEEEecc
Confidence            789999999999986432   3479999999999999999996    357889998877655443  5789999999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      .|+.....||||||||++|+.|+++++|+|||.... ...+..+.++|||.+...+.....|+++.+.+++.++|++.+.
T Consensus        79 ~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  158 (227)
T d1fq3a_          79 AYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLR  158 (227)
T ss_dssp             TCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTSCCCSBCCBCEEECCCHHHHTTTCT
T ss_pred             cCCCCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcccccccceEEEEEEEcHHHhhhhhc
Confidence            999999999999999999999999999999987654 4468889999999987777778899999999999999988775


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..    .....++|........+.|.||+||||+++.     +|+||+|+|..|+.  .|.+||||++|++||+++|+.
T Consensus       159 ~~----~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~-----~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         159 HY----YDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-----VAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             TT----CCTTTEECCSCTTSSCBCCTTCTTCBCBSSS-----SCCCEECCCCTTSC--SCCCEECHHHHHHHHHHHTTC
T ss_pred             cc----ccccceeeeeccccccccccCCCCceEEEeC-----EEEEEEEEcCCCCC--CCcEEEEHHHHHHHHHHHHHh
Confidence            43    2344556665566778899999999999863     59999999998864  489999999999999999874

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-42  Score=309.93  Aligned_cols=217  Identities=24%  Similarity=0.409  Sum_probs=185.0

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|.++||||+|+|+...    .++|+|+||+++||||||||+.    ..+.|++|.+++......  .+...+.+++.|
T Consensus         3 ~~a~~~e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhCv~----~~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~   76 (224)
T d1nn6a_           3 TECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDT--WQKLEVIKQFRH   76 (224)
T ss_dssp             EECCTTSSTTEEEEEEECTTSCEEEEEEEEEETTEEEECGGGCC----SEEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             cCCcCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEehhhccc----ccceEEeccccccccccc--ccceeEEEEEEe
Confidence            568899999999998543    2469999999999999999996    458899999988766653  588999999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |.|+.....+|||||+|++|+.++..++|+|++.... ...+..+...||+.+...+..+..++...+.+++.++|+..+
T Consensus        77 p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  156 (224)
T d1nn6a_          77 PKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR  156 (224)
T ss_dssp             TTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBCCGGGGTTST
T ss_pred             ecccccccccchhhhcccCCcccccccccccccccccccCCCceeeeccccccccCCCccccceEEEEEecCHHHHhhhc
Confidence            9999999999999999999999999999999987654 446788999999988777777889999999999999998766


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                      ..      .....+|+.......+.|.||+||||+++     |+|+||+|++..|.  +.|++||||+.|++||+++|++
T Consensus       157 ~~------~~~~~~~~~~~~~~~~~c~gDsG~PL~~~-----~~l~GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  223 (224)
T d1nn6a_         157 DF------DHNLQLCVGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQILQA  223 (224)
T ss_dssp             TC------CTTTEEEECCTTTC--CCCCCTTCEEEET-----TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHHT
T ss_pred             cc------ccceeeeccCccccccccCCCccceEEEC-----CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHHhc
Confidence            43      45567777666666789999999999985     47999999997765  4699999999999999999875


Q ss_pred             C
Q psy15052        374 G  374 (422)
Q Consensus       374 ~  374 (422)
                      +
T Consensus       224 n  224 (224)
T d1nn6a_         224 N  224 (224)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=5.2e-42  Score=311.34  Aligned_cols=215  Identities=26%  Similarity=0.400  Sum_probs=186.3

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .+|.++||||+|+|.+..    .++|+||||+++||||||||+.    ..+.|++|..........  .+...|+++++|
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaA~C~~----~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~~   78 (224)
T d3rp2a_           5 VESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----REITVILGAHDVRKREST--QQKIKVEKQIIH   78 (224)
T ss_dssp             EECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCSBTTSCCTT--CEEEEEEEEEEC
T ss_pred             EECcCCCCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEecccccc----cccEEEeccccccCcccc--ceeeeEEEEEec
Confidence            678999999999998543    2469999999999999999985    468899998887665543  578899999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                      |+|+.....||||||||++|+.|+++++|+|||.... ...+..+.+.||+.....+.....|+++.+++++.+.|.+.+
T Consensus        79 ~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  158 (224)
T d3rp2a_          79 ESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYR  158 (224)
T ss_dssp             TTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTT
T ss_pred             ccccccccccceeeeeecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCCCccceeeEEEEEccCHHHhhhcc
Confidence            9999999999999999999999999999999988754 446888999999988877777788999999999999998765


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCC
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                      ..      ....++|+.........|.+|+||||+++     ++|+||+|+|..|.  +.|++||||++|++||+++|+
T Consensus       159 ~~------~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~-----~~l~Gi~S~g~~~~--~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         159 YY------EYKFQVCVGSPTTLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CC------CTTTEEEECCTTSCCBCCTTTTTCEEEET-----TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHC
T ss_pred             cc------cccceeeeccCcccccCcCCCcCCeEEEc-----CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            32      56778888777777889999999999985     47999999998775  469999999999999999864

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-42  Score=312.74  Aligned_cols=219  Identities=27%  Similarity=0.493  Sum_probs=185.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+++++||||+|+|+..+.++|+||||+++||||||||+.+    ...|++|..++......  .+.+.+.+++.||.|+
T Consensus         5 ~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhCv~~----~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   78 (237)
T d1ao5a_           5 FNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVD----QYEVWLGKNKLFQEEPS--AQHRLVSKSFPHPGFN   78 (237)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCCS----SCEEEESCCBSSSCCSS--CEECCEEEEEECTTSC
T ss_pred             EECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEECHHHcCC----CceEEEEeccccccccc--cEEEEEEEEeeccccc
Confidence            66889999999999988778999999999999999999974    35688988877654443  5788999999999996


Q ss_pred             CC-----------CCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccCh
Q psy15052        219 FF-----------TYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~~-----------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~  286 (422)
                      ..           ...+|||||||++++.+++.++|+|||.... .....++++|||..... ...+..+....+..++.
T Consensus        79 ~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  157 (237)
T d1ao5a_          79 MSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP-KPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPN  157 (237)
T ss_dssp             GGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC-CTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECH
T ss_pred             ccccccccccCccccccceeeeccCcccccccccceeccCCCCC-cccceEEEeeeeeeccccccCCccceeeEEEEEeh
Confidence            42           2358999999999999999999999997663 45778999999976544 34466788899999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~  365 (422)
                      +.|...+..     .+.+.++|+.......+.|.||+||||+++     |+|+||+|+|. .|+..+.|++||||++|++
T Consensus       158 ~~c~~~~~~-----~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~  227 (237)
T d1ao5a_         158 ENCAKVYLQ-----KVTDVMLCAGEMGGGKDTCRDDSGGPLICD-----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNS  227 (237)
T ss_dssp             HHHHHHCSS-----CCCTTEEEEECTTCSCBCCTTCTTCEEEET-----TEEEEEEEECCSSTTCTTCCEEEECGGGGHH
T ss_pred             HHhhhhhcC-----CCCCCeEEEccCCCCCcccCCCCCCeeEEc-----cEEEEEEEEecCCCCCCCCCeEEEEHHHHHH
Confidence            999987754     377889999877777889999999999985     47999999985 4887888999999999999


Q ss_pred             cccccCCCC
Q psy15052        366 WVLDTGDSG  374 (422)
Q Consensus       366 WI~~~i~~~  374 (422)
                      ||+++|+++
T Consensus       228 WI~~~i~~n  236 (237)
T d1ao5a_         228 WIKDTMMKN  236 (237)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998654

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=8.2e-42  Score=309.99  Aligned_cols=216  Identities=28%  Similarity=0.435  Sum_probs=175.6

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCC-CCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSL-LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKY  217 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y  217 (422)
                      ..|.+++|||+|+|    .+.|+|+||+++||||||||+.+. ....+.|++|..+.....      .+.++.+.+||.|
T Consensus         5 ~~~~~~~~Pw~v~l----~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~v~~g~~~~~~~~------~~~i~~~~i~~~~   74 (223)
T d1os8a_           5 TRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSS------AVKVRSTKVLQAP   74 (223)
T ss_dssp             EECCTTSSTTEEEE----TTTEEEEEEETTEEEECGGGSSCSEECCCCEEEESCSBTTCTT------CEEEEEEEEEECT
T ss_pred             EECCCCCCCcEEEE----eccEeEEEEeCCEEEEChhhccCCCCcceeeeccccccccccc------cccceeeeeeecc
Confidence            56899999999999    467999999999999999999764 345678899988765432      3345666667777


Q ss_pred             CCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        218 NFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       218 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      +.....||||||||++++.+.     +|++.......+..+.+.||+........+..++...+..++.++|+..+....
T Consensus        75 ~~~~~~~DIAllkL~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  149 (223)
T d1os8a_          75 GYNGTGKDWALIKLAQPINQP-----TLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNEL  149 (223)
T ss_dssp             TCSSSSCCCEEEEESSCCCSC-----CCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHHGGGS
T ss_pred             cccccceeeeeeeeeeeeecc-----cccccccccccccceEEeeccccccccccccccccceeeEeCHHHhhhhhcCCC
Confidence            777778999999999988754     444444444568889999999887777778889999999999999998876532


Q ss_pred             CcccccCceEEE-eecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCA-GFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa-~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                          ....++|. ....+..+.|.+|+|+||++.+..++|+|+||+|+|..|+..+.|++|+||++|.+||+++|++
T Consensus       150 ----~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         150 ----VANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             ----CTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             ----ccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence                34444444 4345567899999999999988888999999999999998889999999999999999999864

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-42  Score=315.81  Aligned_cols=222  Identities=28%  Similarity=0.460  Sum_probs=183.6

Q ss_pred             CcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCC
Q psy15052        145 QRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFF  220 (422)
Q Consensus       145 ~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~  220 (422)
                      .|||||+|++...    +.|+|+||+++||||||||+.+.  ....|.+|.............+.+.|.++++||+|+..
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~   78 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTS--RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSN   78 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTT--SCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTT
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEChhhccCC--CceEEEEEeccccccccccccccceeEEEEEccCcccc
Confidence            4999999986543    36999999999999999999864  45667777766554333222456778999999999876


Q ss_pred             CC--CCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        221 TY--EYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       221 ~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      ..  .+|||||+|++|+.++++++|||||.... ...+..+++.||+.+..++..+..++...+.+++.+.|.+..... 
T Consensus        79 ~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (232)
T d1fona_          79 CVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWG-  157 (232)
T ss_dssp             CGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTSTTTTG-
T ss_pred             ccccccceeeeecccceEEeecceeeecCcccccCCCCceeEeeccccccCCCCCCCcceEEEEEEEcHHHhhhhhccC-
Confidence            54  49999999999999999999999997764 345778999999998887778889999999999999998765332 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccccCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~i~~  373 (422)
                        ..+.+.++|+.  ......|.||+||||+++..+++|+|+||+|++.  +|+..+.|++||||++|++||+++|++
T Consensus       158 --~~~~~~~~c~~--~~~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~  231 (232)
T d1fona_         158 --ITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS  231 (232)
T ss_dssp             --GGCCTTEEEEC--CSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             --ceeeeceeeec--cccccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHc
Confidence              23778899986  4466789999999999988889999999999975  477778899999999999999999865

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=1.1e-40  Score=305.02  Aligned_cols=226  Identities=26%  Similarity=0.516  Sum_probs=191.0

Q ss_pred             CCCCCCCcCeEEEEEecCC---CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESLG---RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~---~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ..+.++||||+|+|+...+   +.|+|+||+++||||||||+.......+.|..|..+......   .+.+.|+++++||
T Consensus         5 ~~~~~~e~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~---~~~~~v~~~~~h~   81 (241)
T d1m9ua_           5 TNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSG---TQTANVDSYTMHE   81 (241)
T ss_dssp             EECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCCTT---CEEEEEEEEEECT
T ss_pred             EECCCCCCCCEEEEEEeCCCccEEEEEEEEeCCEEEEChhhcccccCceeeEEEEeeecccccc---cccccceeeeeee
Confidence            5688999999999987653   379999999999999999998877788999999877665443   5889999999999


Q ss_pred             CCCCC--CCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHH
Q psy15052        216 KYNFF--TYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSM  292 (422)
Q Consensus       216 ~y~~~--~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~  292 (422)
                      .|+..  .+.+|||||+|++++.+++.+.|+|+|.... ...+..+++.||+.+...+..+..++...+.+++.++|++.
T Consensus        82 ~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  161 (241)
T d1m9ua_          82 NYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAA  161 (241)
T ss_dssp             TTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             eeccccccccccceeeeccceeeeeeceeeeeeeccccccccceEEEEeecccccCCCCCCCcceEEEEEeechhHhhhh
Confidence            99874  3578999999999999999999999986653 45688999999999887777788999999999999999998


Q ss_pred             HhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc----cccCCCCCceeeeccccccccc
Q psy15052        293 FLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI----GCAEANLPGVCTRISKFVPWVL  368 (422)
Q Consensus       293 ~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~----~C~~~~~p~vyt~V~~y~~WI~  368 (422)
                      +...... ......+|........+.|.||+||||+++  +++++|+||+|+..    +|+..+.|++||||++|++||+
T Consensus       162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~--~~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~  238 (241)
T d1m9ua_         162 MVGVGGA-NIWDNHICVQDPAGNTGACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIG  238 (241)
T ss_dssp             HTTSTTC-CCCTTEEEECCTTSCCBCCTTCTTCEEEEE--SSSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHH
T ss_pred             hhccccc-ccccceeEeecccCCcCcccCCCCcceEEe--cCCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHH
Confidence            8665443 245566677666667889999999999986  35688999998753    4667788999999999999999


Q ss_pred             cc
Q psy15052        369 DT  370 (422)
Q Consensus       369 ~~  370 (422)
                      ++
T Consensus       239 ~n  240 (241)
T d1m9ua_         239 DN  240 (241)
T ss_dssp             HH
T ss_pred             Hc
Confidence            76

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=305.79  Aligned_cols=212  Identities=21%  Similarity=0.362  Sum_probs=182.5

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.++||||+|+|+.++.++|+|+||+++||||||||+.+.....+.+.++..+......   ...+.+..++.|+.|+
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   81 (218)
T d2z7fe1           5 RRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREP---TRQVFAVQRIFENGYD   81 (218)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCT---TCEEEEEEEEEESCCB
T ss_pred             EECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEECeEecccccccceeeeeeecccccccc---ceeeeeeeeEeeeccc
Confidence            6788999999999998888899999999999999999999877788899999877665544   4677889999999999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||+|++|+.++++++|||||.... ......++++||+.....+.....|+...+.+.+. .|        
T Consensus        82 ~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~-~c--------  152 (218)
T d2z7fe1          82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LC--------  152 (218)
T ss_dssp             TTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEECT-TC--------
T ss_pred             cccccceEEEeeccccceeeeeeeeeeeccCccccCCCcEEEEeccceeecccccccceeEEEeccccc-cc--------
Confidence            999999999999999999999999999997664 44577899999999887777788899999888763 34        


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeec-ccccCCCCCceeeecccccccccccCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWG-IGCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                           ...+.|+.......+.|.||+||||+++     |+|+||+||+ .+|+..+.|++||||++|++||+++++
T Consensus       153 -----~~~~~~~~~~~~~~~~C~gdsG~Pl~~~-----~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         153 -----RRSNVCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             -----CTTSEEEECTTSCCBCCTTCTTCEEEET-----TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -----ceeeeeeeecCcccCccccccCCCEEEC-----CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence                 3346777655666789999999999986     3699999997 458878889999999999999999874

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-41  Score=301.99  Aligned_cols=212  Identities=23%  Similarity=0.384  Sum_probs=179.2

Q ss_pred             CCCCCCCcCeEEEEEecC---CCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        139 SSKNTTQRPYVKPLKESL---GRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      .+|.++||||+|+|+...   .+.|+|+||+++||||||||+.......+.|++|.........   .+.+.+.+++.||
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~---~~~~~~~~~~~~~   81 (221)
T d1fuja_           5 HEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEP---TQQHFSVAQVFLN   81 (221)
T ss_dssp             EECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCT---TCEEEEEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEecCCCCEEEEEEEEeCCEEEEeeEEEeecCCccceeeeeccccccccc---cceeeeeeeEEEe
Confidence            678899999999998543   3579999999999999999999877788999999877665544   4678899999999


Q ss_pred             CCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      .|+.....+|||||||++|+.++++++|+|||..+. ...+..+++.||+.....+.....|+...+.+.+...|     
T Consensus        82 ~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~-----  156 (221)
T d1fuja_          82 NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCR-----  156 (221)
T ss_dssp             CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCC-----
T ss_pred             eecCCCCccEEEEEEccccccccceEEEEEecccccccCCCceEEEecccccccccccCccceeeeeeeeeeccc-----
Confidence            999999999999999999999999999999998764 45688899999998877777778889888887764322     


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCC
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGD  372 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~  372 (422)
                               ....|........+.|.||+||||++++     +|+||+|++. +|+..+.|++||||++|++||+++|+
T Consensus       157 ---------~~~~~~~~~~~~~~~c~gd~G~pl~~~~-----~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         157 ---------PHNICTFVPRRKAGICFGDSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             ---------TTEEEEECSSSSCBCCTTCTTCEEEETT-----EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ---------cccceeccccCCCceeCCccCCCEEEeC-----EEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence                     2233333356678999999999999863     6999999985 68888899999999999999999875

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-41  Score=310.33  Aligned_cols=241  Identities=24%  Similarity=0.426  Sum_probs=182.5

Q ss_pred             cCCCccCCCCCccccccccCCCCCCCCCcCeEEEEEecCC-CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeeccc
Q psy15052        118 YSKPYRQTPRPMLSYYSHKDISSKNTTQRPYVKPLKESLG-RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSK  196 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Pw~v~i~~~~~-~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~  196 (422)
                      ||.+..+..+...++.+|   ..|.+++|||+|+|+...+ +.|+||||+++||||||||+.........+..+......
T Consensus         4 cg~~~~~~~~~~~ri~gG---~~a~~~~~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~   80 (247)
T d1rjxb_           4 CGKPQVEPKKCPGAVVGG---CVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEV   80 (247)
T ss_dssp             TTCCSSCCCCCCTTSTTC---EECCTTSSTTEEEEEETTCCEEEEEEEEETTEEEEEGGGGTTCSCGGGEEEEESCCBSS
T ss_pred             CCCCCcCCCCCCCeEECC---EECCCCCCCcEEEEEECCCCEEEEEEEEeCCEEEeeeEEEEeccCCccceeeccccccc
Confidence            444333333444567777   7889999999999987654 479999999999999999998754443333333332222


Q ss_pred             CCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCC
Q psy15052        197 LEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPV  275 (422)
Q Consensus       197 ~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~  275 (422)
                      ...       ...+.+.|+.|......+|||||+|++++.+++.+.|+||+.... ......+...||+.... ......
T Consensus        81 ~~~-------~~~~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  152 (247)
T d1rjxb_          81 NLE-------PHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGL  152 (247)
T ss_dssp             SCC-------TTCEEEEEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC-----CCCSB
T ss_pred             ccc-------ceeeEEeeccccCCCccchhhhhhhhcccccccccccccccccccccCCCceeeecccccccC-CCCCCc
Confidence            111       122333444444445579999999999999999999999987653 34566788889986543 455778


Q ss_pred             ceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCc
Q psy15052        276 LQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPG  355 (422)
Q Consensus       276 L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~  355 (422)
                      ++...+.+++.+.|........   ...+.++|++...+..+.|.||+||||+++ .+++|+|+||+|++..|+..+.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~-~~~~~~l~Gi~S~~~~c~~~~~p~  228 (247)
T d1rjxb_         153 LMEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPNKPG  228 (247)
T ss_dssp             CEEEEEEEECHHHHTSTTTTTT---CSCTTEEEESCSSSCCCBCCSCTTCEEEEE-CSSSEEEEEEECTTSCCBBTTBCE
T ss_pred             ceEEEEEEEchHHhhhhhccCc---ccccceeEEeccCCCcccccCCccceEEEe-eCCEEEEEEEEEeCCCCCCCCCCE
Confidence            8999999999999977654332   367789999877778899999999999998 578999999999999998888999


Q ss_pred             eeeecccccccccccCCC
Q psy15052        356 VCTRISKFVPWVLDTGDS  373 (422)
Q Consensus       356 vyt~V~~y~~WI~~~i~~  373 (422)
                      +||||++|++||+++|+.
T Consensus       229 v~t~v~~~~~WI~~~i~~  246 (247)
T d1rjxb_         229 VYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             EEEEGGGGHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHhc
Confidence            999999999999998864

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=8.4e-41  Score=305.15  Aligned_cols=227  Identities=21%  Similarity=0.392  Sum_probs=182.3

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .+|.++||||+|+|+...+++|+|+||+++||||||||+.+...    +.+........... .......+..+.|+.|+
T Consensus         5 ~~a~~~e~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhCv~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (234)
T d1op0a_           5 NECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQ----MQLGVHSKKVLNED-EQTRNPKEKFICPNKNN   79 (234)
T ss_dssp             EECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCE----EEESCSCSSSCCTT-CEEECEEEEEECTTCCT
T ss_pred             EECCCCCcCcEEEEEECCcEEEEEEEEcCCEEEECceeCCCCCc----cccceeeccccCCc-ceeeeeeeecccccccc
Confidence            67899999999999988778899999999999999999976322    23333332222221 13344556778899999


Q ss_pred             CCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHHHHhhcC
Q psy15052        219 FFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRSMFLRAG  297 (422)
Q Consensus       219 ~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~~~~~~~  297 (422)
                      .....+|||||||++|+.|+++++|+|||... ...+..+.++||+..... ......++...+.+++.++|...+... 
T Consensus        80 ~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-  157 (234)
T d1op0a_          80 NEVLDKDIMLIKLDKPISNSKHIAPLSLPSSP-PSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPEL-  157 (234)
T ss_dssp             TCTTSSCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC-
T ss_pred             ccccchhhhhhhcCCceeccceeecccccccC-cccceEEEEeeeccccccccccccccccccceEechHHhcccccCc-
Confidence            99999999999999999999999999999765 356889999999976643 345667899999999999999877543 


Q ss_pred             CcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccccccccCCCCCC
Q psy15052        298 RYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTGDSGGP  376 (422)
Q Consensus       298 ~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~i~~~~p  376 (422)
                         .....++|.....+..+.|.||+|+||+++     |+|+||+|++. .|+....|++||||+.|++||+++|+.+.+
T Consensus       158 ---~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~~~~  229 (234)
T d1op0a_         158 ---LAEYRTLCAGIVQGGKDTCGGDSGGPLICN-----GQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTD  229 (234)
T ss_dssp             ---CTTSCEEEEECTTCCCBCCTTCTTCEEEET-----TEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHTCTT
T ss_pred             ---ceeeeeeeecccccccccccCCCCceEEEc-----CEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhhcCC
Confidence               234556666656677889999999999985     36999999984 588888899999999999999999998887


Q ss_pred             cccc
Q psy15052        377 LQVK  380 (422)
Q Consensus       377 l~~~  380 (422)
                      ..|.
T Consensus       230 ~~~~  233 (234)
T d1op0a_         230 ATCP  233 (234)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7654

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6e-41  Score=306.57  Aligned_cols=226  Identities=27%  Similarity=0.411  Sum_probs=184.1

Q ss_pred             CCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEE-
Q psy15052        139 SSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV-  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i-  213 (422)
                      .+|.++||||+|+|++..+    ++|+|+||+++||||||||+.+.  ....|.+|..........  .........++ 
T Consensus         5 ~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~   80 (240)
T d1gvkb_           5 TEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRE--LTFRVVVGEHNLNQNNGT--EQYVGVQKIVVH   80 (240)
T ss_dssp             EECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSC--CCEEEEESCSBTTSCCSC--CEEEEEEEEEEC
T ss_pred             EECCCCCCCEEEEEEEecCCccceEEEEEEEeCCEEEECccccccc--CCceEEeeeeeccccccc--cccccccceeEE
Confidence            6789999999999985432    36999999999999999999863  456688888887665554  23344444444 


Q ss_pred             -CCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        214 -HPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       214 -Hp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                       |+.++.....+|||||||++++.+++.++|+||+.... ........++||+.+.........|+...+.+++.+.|..
T Consensus        81 ~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (240)
T d1gvkb_          81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTS
T ss_pred             EeecccccccCcceeeecccCcccccccccceeeccCccccccccceeEeccccccccccccceeeEEEEEEEcHHHhcc
Confidence             55556667789999999999999999999999987654 3456778899999887777778889999999999999977


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc--ccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~--C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      .+...   ....+.++|+.. .+..+.|.||+||||++. .+++|+|+||+||+..  |+..+.|++||||++|++||++
T Consensus       161 ~~~~~---~~~~~~~~c~~~-~~~~~~c~gDsG~pl~~~-~~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~  235 (240)
T d1gvkb_         161 SSYWG---STVKNSMVCAGG-DGVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN  235 (240)
T ss_dssp             TTTTG---GGCCTTEEEECC-SSSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             eeccC---CccCCceEEecC-CCCCccccCccccceEEE-ECCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            66433   237788999984 456789999999999998 5789999999999865  6667889999999999999999


Q ss_pred             cCCC
Q psy15052        370 TGDS  373 (422)
Q Consensus       370 ~i~~  373 (422)
                      +|++
T Consensus       236 ~i~~  239 (240)
T d1gvkb_         236 VIAS  239 (240)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9865

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-41  Score=310.93  Aligned_cols=231  Identities=26%  Similarity=0.492  Sum_probs=178.8

Q ss_pred             cccccccCCCCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEE
Q psy15052        130 LSYYSHKDISSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVV  209 (422)
Q Consensus       130 ~~~~~~~~~~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~  209 (422)
                      .++.+|   .+++.++|||+|.|.   .++|+|+||+++||||||||+.+.  ....+++|..+....... ..+.+.|.
T Consensus        12 ~ri~gG---~~~~~~~~Pw~v~l~---~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~-~~~~~~v~   82 (259)
T d1elva1          12 QRIIGG---SDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGN--REPTMYVGSTSVQTSRLA-KSKMLTPE   82 (259)
T ss_dssp             --CBTC---EECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTC--SSCCEECSCSBCC--------CEECEE
T ss_pred             CceECC---EECCCCCcceEEEeC---CceEEEEEEeCCEEEecccccccc--cceeEEeeeeeeeccccc-ccccccce
Confidence            356666   678899999999994   568999999999999999999874  345667777665443222 25778999


Q ss_pred             EEEECCCCC-------CCCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEE
Q psy15052        210 KKMVHPKYN-------FFTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKV  279 (422)
Q Consensus       210 ~i~iHp~y~-------~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~  279 (422)
                      ++++||+|.       .....||||||||++|+.++++++|+|++....   ...+..+.+.||+.+.... ....++..
T Consensus        83 ~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  161 (259)
T d1elva1          83 HVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD-RAVRLKAA  161 (259)
T ss_dssp             EEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS-SCSBCEEE
T ss_pred             eEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccc-cccccccc
Confidence            999999995       345679999999999999999999999987652   3467889999999765443 45678899


Q ss_pred             EEeccChhhHHHHHhhcCC----cccccCceEEEeecCCCCCCCcCCCCCCceeecC--CCcEEEeeEEeecccccCCCC
Q psy15052        280 TVPIVSNEKCRSMFLRAGR----YEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGK--DGRYFLAGIISWGIGCAEANL  353 (422)
Q Consensus       280 ~v~v~~~~~C~~~~~~~~~----~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~--~~~~~lvGV~S~g~~C~~~~~  353 (422)
                      .+.+++...|...+.....    ...+.+.++|++. ....+.|.||+||||++++.  +++|+|+||+|++.+|+   .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~---~  237 (259)
T d1elva1         162 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---T  237 (259)
T ss_dssp             EEEEECHHHHHTC----------CCCCCTTEEEEEC-STTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTT---S
T ss_pred             eeeEechhhceeeeecccccccccceeecceeeccC-CCCCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCCC---C
Confidence            9999999999866543221    1235777888874 45678999999999998743  45899999999999885   4


Q ss_pred             CceeeecccccccccccCCCC
Q psy15052        354 PGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       354 p~vyt~V~~y~~WI~~~i~~~  374 (422)
                      |.+||||++|++||+++|+.+
T Consensus       238 p~vft~V~~~~~WI~~~i~~~  258 (259)
T d1elva1         238 YGLYTRVKNYVDWIMKTMQEN  258 (259)
T ss_dssp             EEEEEEGGGGHHHHHHHHHHT
T ss_pred             ceEEeEHHHHHHHHHHHHHhc
Confidence            899999999999999998654

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-41  Score=320.17  Aligned_cols=225  Identities=24%  Similarity=0.399  Sum_probs=160.6

Q ss_pred             CCCCCCCcCeEEEEEecC----CCCceEEEccCCEEeecccCcCC-CCCceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        139 SSKNTTQRPYVKPLKESL----GRPVNVYSNNEKVDDFSTESVNS-LLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~-~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ..++.++|||+|+|+...    .++|+|+||+++||||||||+.. .....+.|++|...          +.+.|+++++
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~g~~~----------~~~~v~~i~~   78 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEK----------RDLEIEVVLF   78 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTCS----------SCEEEEEEEE
T ss_pred             CCCCcCCCCCEEEEEEEECCCCcEEEEEEEecCCEEEEChhheecCCCcceEEEEeCCee----------ceeeeEEEEe
Confidence            456788999999998532    34799999999999999999965 33456889888532          4568999999


Q ss_pred             CCCCCC---------CCCCCceEEEEECCCcccCCCeeeeecCCCCC------CCCCCeEEEEEecccCC-------CCC
Q psy15052        214 HPKYNF---------FTYEYDLALVRLETPVEFAPNIVPICLPGSDD------LLIGENATVTGWGRLSE-------GGS  271 (422)
Q Consensus       214 Hp~y~~---------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~------~~~~~~~~v~GwG~~~~-------~~~  271 (422)
                      ||+|+.         ..+.||||||||++|+.|+++|+|||||....      ......+...+|+....       ...
T Consensus        79 Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (287)
T d1rrka1          79 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE  158 (287)
T ss_dssp             CTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEE
T ss_pred             cCCccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCcccccccc
Confidence            999974         34568999999999999999999999996531      11111111122221111       012


Q ss_pred             CCCCceEEEEeccChhhH---HHHHhhc-------CCcccccCceEEEeecCC--CCCCCcCCCCCCceeecCCCcEEEe
Q psy15052        272 LPPVLQKVTVPIVSNEKC---RSMFLRA-------GRYEFISDIFMCAGFDNG--GRDSCQGDSGGPLQVKGKDGRYFLA  339 (422)
Q Consensus       272 ~~~~L~~~~v~v~~~~~C---~~~~~~~-------~~~~~i~~~~lCa~~~~~--~~~~C~GDSGgPLv~~~~~~~~~lv  339 (422)
                      ....++...+.+.+...|   .......       .....+++.||||+...+  +.++|.|||||||+++ .+++|+|+
T Consensus       159 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~-~~~~~~lv  237 (287)
T d1rrka1         159 EEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH-KRSRFIQV  237 (287)
T ss_dssp             SSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEE-ETTEEEEE
T ss_pred             CCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEe-cCCeEEEE
Confidence            345667777776655544   3322211       112246789999985433  4678999999999998 67899999


Q ss_pred             eEEeeccc--cc--------CCCCCceeeecccccccccccCCCC
Q psy15052        340 GIISWGIG--CA--------EANLPGVCTRISKFVPWVLDTGDSG  374 (422)
Q Consensus       340 GV~S~g~~--C~--------~~~~p~vyt~V~~y~~WI~~~i~~~  374 (422)
                      ||+|||..  |.        ....|.|||||+.|++||+++|+..
T Consensus       238 GI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~  282 (287)
T d1rrka1         238 GVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  282 (287)
T ss_dssp             EEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             EEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            99999753  32        2246789999999999999999854

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=2.6e-40  Score=301.83  Aligned_cols=216  Identities=26%  Similarity=0.447  Sum_probs=176.7

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      ++|+++||||+|+|..  .++|+|+||+++||||||||+.+.    ..+.+..........  ......+.++..|++|.
T Consensus         5 ~~a~~~~~Pw~v~i~~--~~~C~GtLIs~~~VLTaAhCv~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   76 (235)
T d1tona_           5 YKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYSNN----YQVLLGRNNLFKDEP--FAQRRLVRQSFRHPDYI   76 (235)
T ss_dssp             EECCTTSCTTEEEEES--SSEEEEEEEETTEEEECGGGCCSC----CEEEESCSBTTSCCT--TCEEECEEEEEECTTCC
T ss_pred             EECCCCCCCeEEEEcC--CeEEEEEEecCCEEEECceecCCC----CceEEeeeeeecCCC--ceeEeeeeeeeeeeece
Confidence            6799999999999974  578999999999999999999752    344555444433322  24667788888888875


Q ss_pred             C-----------CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCC-CCCCCceEEEEeccCh
Q psy15052        219 F-----------FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGG-SLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~-----------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~v~v~~~  286 (422)
                      .           ....+|||||+|++|+.+++.+.|+||+.... .....+.++|||.+.... .....|+...+.+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~-~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~  155 (235)
T d1tona_          77 PLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP-KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSN  155 (235)
T ss_dssp             CC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC-CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECG
T ss_pred             eeeeeecccccccccccceeEEEecCccccCCcccccccccccc-cccceeEEEEccccccccccccccceeeeeeeeCH
Confidence            3           34568999999999999999999999987653 457788999999876543 3456799999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~  365 (422)
                      ++|+..+...     ..+.++|++...+..+.|.||+||||+++     |+|+||+|++. .|+..+.|.+||||++|++
T Consensus       156 ~~C~~~~~~~-----~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~  225 (235)
T d1tona_         156 EKCIETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLICD-----GVLQGITSGGATPCAKPKTPAIYAKLIKFTS  225 (235)
T ss_dssp             GGCGGGGSTT-----GGGGEEEEECTTCSCBCCTTCTTCEEEET-----TEEEEEECCCCSSCSCTTCCEEEEEGGGGHH
T ss_pred             HHHHHHhCCC-----CCCCceEeCcCCCCccccCCCcCCeEEEc-----CEEEEEEEeCCCCCCCCCCCeEEEEHHHHHH
Confidence            9999887542     67889999877778889999999999985     47999999986 5877788999999999999


Q ss_pred             cccccCCC
Q psy15052        366 WVLDTGDS  373 (422)
Q Consensus       366 WI~~~i~~  373 (422)
                      ||+++|++
T Consensus       226 WI~~~i~~  233 (235)
T d1tona_         226 WIKKVMKE  233 (235)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1e-39  Score=297.68  Aligned_cols=223  Identities=27%  Similarity=0.479  Sum_probs=182.7

Q ss_pred             CCCCCCCcCeEEEEEecCC----CCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKESLG----RPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~----~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      ..|+++||||+|+|+...+    +.|+|+||+++||||||||+...  ....|.+|..........  .....+..+.+|
T Consensus         5 ~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~   80 (236)
T d1elta_           5 RVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSA--RTWRVVLGEHNLNTNEGK--EQIMTVNSVFIH   80 (236)
T ss_dssp             EECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSC--CCEEEEESCSBTTSCCSC--CEEECEEEEEEC
T ss_pred             EECCCCCCCcEEEEEEccCCcceeEEEEEEEeCCEEEECeeecccc--ccceeeccceeeecccCC--ceeeeeeEEEEe
Confidence            6789999999999986543    25999999999999999999863  456677877666554443  577888889999


Q ss_pred             CCCCCCCC--CCceEEEEECCCcccCCCeeeeecCCCCC-CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTY--EYDLALVRLETPVEFAPNIVPICLPGSDD-LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |.|+....  .+|||||||++|+.++..++|||||.... ......+++.|||....+......+++..+.+++.++|..
T Consensus        81 ~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (236)
T d1elta_          81 SGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSS  160 (236)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTS
T ss_pred             eeecccccccCceEEEeeccCcceeecccceeecCchhcccCCCceEEEecccccccCcccCccceeeeeEEEcHHHhhh
Confidence            99987654  57999999999999999999999997764 3456789999999988777778889999999999999976


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc--cccCCCCCceeeecccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  369 (422)
                      ......   .....++|+.  ....+.|.||+||||++. .+++|+|+||+|++.  +|+..+.|++||||++|++||++
T Consensus       161 ~~~~~~---~~~~~~~~~~--~~~~~~c~gdsGgpl~~~-~~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~  234 (236)
T d1elta_         161 SGWWGS---TVKTTMVCAG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNG  234 (236)
T ss_dssp             TTTTGG---GSCTTEEEEC--CSSCBCCTTCTTCEEEEE-ETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hccccc---ccceeeeecC--CccccccccccccceEEE-ECCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            654322   2455566664  345688999999999998 568999999999964  58778889999999999999998


Q ss_pred             cC
Q psy15052        370 TG  371 (422)
Q Consensus       370 ~i  371 (422)
                      +|
T Consensus       235 vi  236 (236)
T d1elta_         235 IM  236 (236)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=4.9e-40  Score=299.24  Aligned_cols=216  Identities=23%  Similarity=0.379  Sum_probs=176.3

Q ss_pred             CCCCCCCcCeEEEEEec----CCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        139 SSKNTTQRPYVKPLKES----LGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .+|.++||||+|+|+..    ..++|+||||+++||||||||+..  ...+.+++|..+...     ..+.+.|+++++|
T Consensus         5 ~~a~~ge~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~--~~~~~v~~~~~~~~~-----~~~~~~v~~i~~h   77 (230)
T d2hlca_           5 YEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSAVQYE-----GEAVVNSERIISH   77 (230)
T ss_dssp             EECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCSBTTC-----CSEEEECSEEEEC
T ss_pred             EECCCCCCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEeeecccc--cccceeecccceecc-----cccceeeEeEEee
Confidence            67889999999999853    234699999999999999999975  466788888766533     2578999999999


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCC---CCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHH
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDD---LLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      |+|+.....+|||||+|+++ .++++++|+||+....   ...+..+.+.|||..   +.....++...+..++.++|..
T Consensus        78 p~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~c~~  153 (230)
T d2hlca_          78 SMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNNKFENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRCAQ  153 (230)
T ss_dssp             TTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCC---SSCCCBCEEEEEEEECHHHHHT
T ss_pred             ecccccccccceeEEEeecc-cccccceeEEeeccccccccccceeEEEEeeccc---cccchhhheeeeccccchhhhh
Confidence            99999999999999999876 5788999999987543   235677888899864   3345678899999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccc-cCCCCCceeeeccccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGC-AEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C-~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      .+...    ...+.++|+. .....+.|.||+||||+++   ++|+|+||+|++.++ +..+.|++||||++|++||+++
T Consensus       154 ~~~~~----~~~~~~~~~~-~~~~~~~~~gdsGgp~~~~---~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~  225 (230)
T d2hlca_         154 EYPPG----IIVESTICGD-TSDGKSPCFGDSGGPFVLS---DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN  225 (230)
T ss_dssp             TSCTT----SSCTTEEEEC-CTTSCBCCTTCTTCEEEEG---GGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHH
T ss_pred             ccccc----cccccceEec-cccCccccccccCCCeEEC---CCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHH
Confidence            66432    3566778876 4556789999999999985   468999999998763 3568899999999999999998


Q ss_pred             CCC
Q psy15052        371 GDS  373 (422)
Q Consensus       371 i~~  373 (422)
                      |+-
T Consensus       226 ~~~  228 (230)
T d2hlca_         226 TGI  228 (230)
T ss_dssp             HCC
T ss_pred             hCC
Confidence            863

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-40  Score=297.81  Aligned_cols=213  Identities=28%  Similarity=0.458  Sum_probs=159.1

Q ss_pred             CCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEE-----------EE
Q psy15052        144 TQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVK-----------KM  212 (422)
Q Consensus       144 ~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~-----------i~  212 (422)
                      +++||||+|+.+++++|+|+||+++||||||||+.+    ...+++|..........  .+...+..           +.
T Consensus         1 ~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   74 (228)
T d1sgfa_           1 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKNNFLEDEPS--DQHRLVSKAIPHPDFNMSLLN   74 (228)
T ss_dssp             CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCS----CCEEEECC----C-CTT--CEEEEEEEEEECTTSCGGGC-
T ss_pred             CCCCcEEEEEECCcEEEEEEEEcCCEEEeCHHHccC----CceEEEeeeeecccccc--ceeeeeeeeccccceeeeeec
Confidence            367999999988888999999999999999999975    34678887766544332  34444444           45


Q ss_pred             ECCCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccChhhHHH
Q psy15052        213 VHPKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSNEKCRS  291 (422)
Q Consensus       213 iHp~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~~~C~~  291 (422)
                      .|+.|+.....+|||||+|++|+.|+++++|||||.... .....+++.||+.+... +..+..|+...+.+++.++|++
T Consensus        75 ~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~  153 (228)
T d1sgfa_          75 EHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP-KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK  153 (228)
T ss_dssp             ---CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC-CTTCEEEEC-------C---------CEEEEEECTHHHHT
T ss_pred             ccCCCCccccccceeEEeeccccccCCceeeEecCcccc-ccCcceEEEeeeeccCCccCCCCccEEEEEEEeCHHHhhh
Confidence            899999999999999999999999999999999997664 45678899999876543 4556789999999999999987


Q ss_pred             HHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc-cccCCCCCceeeeccccccccccc
Q psy15052        292 MFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       292 ~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                      .+..     ...+.++|++...+....|.+|+|+||+++     ++|+||+|+|. .|+..+.|++||||++|++||+++
T Consensus       154 ~~~~-----~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~-----~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~  223 (228)
T d1sgfa_         154 AHEM-----KVTDAMLCAGEMDGGSYTCEHDSGGPLICD-----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET  223 (228)
T ss_dssp             TCSS-----BCCTTEEEEEECSSSEEECCCCTTCEEEET-----TEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHH
T ss_pred             hccC-----CcccceEEeccCCCCccccCCCcCCcEEEe-----CEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            6643     256778888877777889999999999985     37999999985 587888999999999999999999


Q ss_pred             CCC
Q psy15052        371 GDS  373 (422)
Q Consensus       371 i~~  373 (422)
                      |+.
T Consensus       224 i~~  226 (228)
T d1sgfa_         224 MAN  226 (228)
T ss_dssp             HHS
T ss_pred             HhH
Confidence            864

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=2.1e-39  Score=296.00  Aligned_cols=219  Identities=24%  Similarity=0.395  Sum_probs=177.4

Q ss_pred             CCCCCCCcCeEEEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCC
Q psy15052        139 SSKNTTQRPYVKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYN  218 (422)
Q Consensus       139 ~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~  218 (422)
                      .++.++||||+|+|++...+.|+|+||+++||||||||+.+..    ..............  ..+...+...+.|+.|+
T Consensus         5 ~~~~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   78 (237)
T d1gvza_           5 WECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDY----QIWLGRHNLSKDED--TAQFHQVSDSFLDPQFD   78 (237)
T ss_dssp             EECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSC----EEEESCSBTTSCCT--TCEEECEEEEEECTTSC
T ss_pred             EECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEeChhhccCCC----ceeEeeeeeccccC--cceeeeeeeEEeeeeee
Confidence            6788999999999998877889999999999999999997632    22333333333222  25778899999999985


Q ss_pred             C-----------CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCC-CCCCCCceEEEEeccCh
Q psy15052        219 F-----------FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEG-GSLPPVLQKVTVPIVSN  286 (422)
Q Consensus       219 ~-----------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~v~v~~~  286 (422)
                      .           ....+|||||||++|+.++++++|+|||... ...+..+++.|||..... ...+..|+...+.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~-~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~  157 (237)
T d1gvza_          79 LSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-PKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSN  157 (237)
T ss_dssp             GGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECG
T ss_pred             eeeeecccccCccccccceEEEEECCceecccccccccccccc-cccceeEEEEeeeeeccccccccceeeEEEEEeecH
Confidence            3           2246899999999999999999999999654 455788999999976543 34456799999999999


Q ss_pred             hhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccc-ccCCCCCceeeecccccc
Q psy15052        287 EKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVP  365 (422)
Q Consensus       287 ~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~-C~~~~~p~vyt~V~~y~~  365 (422)
                      +.|...+...     ..+.++|.....+..+.|.||+||||++++     +|+||+|+|.. |+..+.|.+||||++|++
T Consensus       158 ~~C~~~~~~~-----~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~-----~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~  227 (237)
T d1gvza_         158 EKCARAYPEK-----MTEFVLCATHRDDSGSICLGDSGGALICDG-----VFQGITSWGYSECADFNDNFVFTKVMPHKK  227 (237)
T ss_dssp             GGGCSSCGGG-----CCTTEEEEECSSTTCEECGGGTTCEEEETT-----EEEEEECCCSSSCEETTTSCCEEESGGGHH
T ss_pred             HHHHhhcccc-----cccccccceecccccccccCCCCCcEEEcC-----EEEEEEEeccCCCCCCCCCeEEEEHHHHHH
Confidence            9998877553     566778877677788999999999999863     69999999864 777788999999999999


Q ss_pred             cccccCCCC
Q psy15052        366 WVLDTGDSG  374 (422)
Q Consensus       366 WI~~~i~~~  374 (422)
                      ||+++|+.+
T Consensus       228 WI~~~i~~~  236 (237)
T d1gvza_         228 WIKETIEKN  236 (237)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998643

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.92  E-value=2.1e-27  Score=212.67  Aligned_cols=196  Identities=13%  Similarity=0.106  Sum_probs=131.8

Q ss_pred             CCCCCcCeEEEEE-ecCCCCceEEEccCCEEeecccCcCCCCCc----eEEEEEeeeecccCCCCCCcEEEeEEEEEECC
Q psy15052        141 KNTTQRPYVKPLK-ESLGRPVNVYSNNEKVDDFSTESVNSLLTS----QIKIRVGEYDFSKLEEPYPYQERGVVKKMVHP  215 (422)
Q Consensus       141 a~~~~~Pw~v~i~-~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~----~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp  215 (422)
                      ++...+||.+.++ ...+..|+|+||+++||||||||+......    .+.+.++..+....     .....+.+++.||
T Consensus        12 ~~~~~~P~~~~~~i~~~~~~CsG~LI~~~~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~   86 (215)
T d1p3ca_          12 ANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAV-----NGSANMTEFYVPS   86 (215)
T ss_dssp             SCTTSTTGGGEEEEECSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCT-----TCCEEEEEEECCH
T ss_pred             CCCCCCCcEEEEEEEcCCeEEEEEEEeCCEEEECcceeccCCCCceeeeEEEeccccCCCCC-----ceeEEEeEEEEec
Confidence            4567799965555 334578999999999999999999664332    35566665443322     3467899999999


Q ss_pred             CCCC-CCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHh
Q psy15052        216 KYNF-FTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFL  294 (422)
Q Consensus       216 ~y~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~  294 (422)
                      .|.. ....+|+|||||+.++.+.  ..+++++... ...++.+.++||+...........+..........        
T Consensus        87 ~~~~~~~~~~DiAll~l~~~~~~~--~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--------  155 (215)
T d1p3ca_          87 GYINTGASQYDFAVIKTDTNIGNT--VGYRSIRQVT-NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTRE--------  155 (215)
T ss_dssp             HHHHHCCGGGCCEEEEESSCHHHH--HCCCCBCCCS-CCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEE--------
T ss_pred             ccccCCCccceEEEEEeccCCCcc--cccccccccc-ccCCceeEEEcCCCCcCCCcccceeeEeeeccccc--------
Confidence            9864 3456899999999987643  3445554433 45688999999986432222122222222211111        


Q ss_pred             hcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCC-CCCceeeecccccccccc
Q psy15052        295 RAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA-NLPGVCTRISKFVPWVLD  369 (422)
Q Consensus       295 ~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~-~~p~vyt~V~~y~~WI~~  369 (422)
                               ....+.    ...+.|.|||||||+..    .+.|+||+|+|.+|+.. ..|.+|++|.+|++||++
T Consensus       156 ---------~~~~~~----~~~~~~~G~SGgPl~~~----~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         156 ---------DTNLAY----YTIDTFSGNSGSAMLDQ----NQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             ---------CSSEEE----ECCCCCTTCTTCEEECT----TSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             ---------ccccce----eecccCCCCccCeEECC----CCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence                     111111    14578999999999842    45699999999877643 348899999999999987

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.91  E-value=7.3e-27  Score=216.20  Aligned_cols=191  Identities=12%  Similarity=-0.004  Sum_probs=114.4

Q ss_pred             eEEEEEecCCCCceEEEcc------CCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCC
Q psy15052        148 YVKPLKESLGRPVNVYSNN------EKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFT  221 (422)
Q Consensus       148 w~v~i~~~~~~~C~GtLIs------~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~  221 (422)
                      .++.+...+.++|+|+||+      ++||||||||+.+.....+.++++.........     ...+.+..+|+.|+...
T Consensus        24 ~v~~~~~~g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   98 (263)
T d1arba_          24 AVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCR-----APNTPASGANGDGSMSQ   98 (263)
T ss_dssp             GEEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCC-----CTTSGGGGSCCCCCCCC
T ss_pred             EEEEEecCCcEEEEEEEECCCCCCccceEEEchhhCCCCCCcceEEEEEEEeecccce-----eeeeeeeecccCcccee
Confidence            4677777777899999998      679999999998755445556666544433222     12334445667666555


Q ss_pred             CC-----------CceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCC-------CCCceEEEEec
Q psy15052        222 YE-----------YDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSL-------PPVLQKVTVPI  283 (422)
Q Consensus       222 ~~-----------nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~-------~~~L~~~~v~v  283 (422)
                      ..           +||||++|+.++.....                 ....+|+........       ...++....  
T Consensus        99 ~~~~~~l~~~~~~~Diall~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  159 (263)
T d1arba_          99 TQSGSTVKATYATSDFTLLELNNAANPAFN-----------------LFWAGWDRRDQNYPGAIAIHHPNVAEKRISN--  159 (263)
T ss_dssp             EEECEEEEEEETTTTEEEEEESSCCCGGGC-----------------CEEBCEECCSCCCSCEEEEECGGGCSCEEEE--
T ss_pred             eecchheeecCCCcceeeeecccccccccc-----------------eeeeccCccccCCccccceeccccceeeeec--
Confidence            44           45555555554433322                 233344332221110       011111111  


Q ss_pred             cChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecc----cccCCCCCceeee
Q psy15052        284 VSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGI----GCAEANLPGVCTR  359 (422)
Q Consensus       284 ~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~----~C~~~~~p~vyt~  359 (422)
                      .....|...+.     ..+...++|+....+..+.|+|||||||++++.    .++||+|++.    .|+ .+.|++|+|
T Consensus       160 ~~~~~~~~~~~-----~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~g----~~vGvvsgg~s~c~~c~-~~~p~vYtr  229 (263)
T d1arba_         160 STSPTSFVAWG-----GGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEK----RVLGQLHGGPSSCSATG-TNRSDQYGR  229 (263)
T ss_dssp             ECSCCEEECTT-----SSSCSSEEEEECCTTSCCCCTTCTTCEEECTTS----CEEEEEEECSCCTTCCG-GGSEEEEEE
T ss_pred             ccccchhhccC-----CCCCccEEEEEecCCCccccCCCCcceEEecCC----CEEEEEEEEEeCCcCCC-CCCCceEEE
Confidence            11111111111     136678999998777888999999999997533    2778887774    344 468999999


Q ss_pred             cccccccccccCC
Q psy15052        360 ISKFVPWVLDTGD  372 (422)
Q Consensus       360 V~~y~~WI~~~i~  372 (422)
                      |++|.+||...+.
T Consensus       230 V~~~~~~~~~~~~  242 (263)
T d1arba_         230 VFTSWTGGGAAAS  242 (263)
T ss_dssp             HHHHHHTTSSGGG
T ss_pred             EEEeeccCCcchh
Confidence            9999777766654

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.68  E-value=1.3e-16  Score=144.62  Aligned_cols=175  Identities=17%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             CCCCCcCe--EEEEEecCCCCceEEEccCCEEeecccCcCCCCCce--EEEEEeeeecccCCCCCCcEEEeEEEEEECCC
Q psy15052        141 KNTTQRPY--VKPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQ--IKIRVGEYDFSKLEEPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       141 a~~~~~Pw--~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~--~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~  216 (422)
                      ....++||  ++.|...+...|+|+||++++|||||||+.......  +.+..+...........+...+.+..+..+|.
T Consensus        36 ~~~~~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (242)
T d1agja_          36 KDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPF  115 (242)
T ss_dssp             TGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTT
T ss_pred             cccccCCcccEEEEEeCCCccEEEEEEeCCEEEEcccEeccCCCceEEEEEeecceecccceeeeccceEEEEEEeeecC
Confidence            44567888  467777777789999999999999999997533333  33333322222211111234556777666553


Q ss_pred             CCCCCCCCceEEEEECCCcc---cCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        217 YNFFTYEYDLALVRLETPVE---FAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~---~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                          ...+|||||+|+.+..   +...+.|+.|........++.++++||....    ....+......+...       
T Consensus       116 ----~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~~~----~~~~~~~~~~~~~~~-------  180 (242)
T d1agja_         116 ----GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDH----KVNQMHRSEIELTTL-------  180 (242)
T ss_dssp             ----CTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTT----STTCCEEEEEEECCG-------
T ss_pred             ----CCcCcEEEEEeccccccccccccCcceeecccccccCCcEEEEEEcCCCC----ccceeEecccccccc-------
Confidence                2357999999987643   2346788888776666789999999996421    122223222222211       


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeeccccc
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCA  349 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~  349 (422)
                                ...+..     ..+.+.|+|||||+.  .++  .|+||++++..+.
T Consensus       181 ----------~~~~~~-----~~~~~~G~SGgPl~~--~~g--~vVGI~~~~~~~~  217 (242)
T d1agja_         181 ----------SRGLRY-----YGFTVPGNSGSGIFN--SNG--ELVGIHSSKVSHL  217 (242)
T ss_dssp             ----------GGSEEE-----ECCCCGGGTTCEEEC--TTS--EEEEEEEEEEECS
T ss_pred             ----------cccEEE-----ecccCCccCCCcEEC--CCC--eEEEEEeEeecCC
Confidence                      112222     235678999999983  233  4999999986654

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.66  E-value=3.4e-16  Score=139.18  Aligned_cols=191  Identities=14%  Similarity=0.059  Sum_probs=107.8

Q ss_pred             CCCCCcCe--EEEEEec---CCCCceEEEccCCEEeecccCcCCCCC--ceEEEEEeeeecccCCCCCCcEEEeEEEEEE
Q psy15052        141 KNTTQRPY--VKPLKES---LGRPVNVYSNNEKVDDFSTESVNSLLT--SQIKIRVGEYDFSKLEEPYPYQERGVVKKMV  213 (422)
Q Consensus       141 a~~~~~Pw--~v~i~~~---~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~i  213 (422)
                      ++..++||  ++.|...   +.+.|+|+||+++||||||||+.+...  ..+.+...........    ...........
T Consensus        12 ~d~~~~p~~~v~~i~~~~~~~~~~cTG~lI~~~~vLTAaHcv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   87 (216)
T d2o8la1          12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYP----NGGFTAEQITK   87 (216)
T ss_dssp             SSTTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCT----TCCEEEEEEEE
T ss_pred             cCCCcCchheEEEEEEEcCCCCEEEEEEEEeCCEEEEeeeeeccCCCceEEEEEEecccccceee----eeeEEeeeeec
Confidence            34667888  4455432   235799999999999999999976332  2333333332222111    12223333322


Q ss_pred             CCCCCCCCCCCceEEEEECCCcccCCC---eeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHH
Q psy15052        214 HPKYNFFTYEYDLALVRLETPVEFAPN---IVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCR  290 (422)
Q Consensus       214 Hp~y~~~~~~nDIALLkL~~pv~~s~~---v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~  290 (422)
                      ..      ..+|+|||+|+.+......   ..+..+........+....++||.....    ........-.+..     
T Consensus        88 ~~------~~~D~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----~~~~~~~~~~~~~-----  152 (216)
T d2o8la1          88 YS------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKP----VATMWESKGKITY-----  152 (216)
T ss_dssp             CS------SSSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSS----TTCEEEEEEEEEE-----
T ss_pred             cc------cCCceEEEEecccccccccccceeeeeccccccccCCceeEEEEccCCCc----eeeEEEEeeEEEE-----
Confidence            22      2579999999987754433   2333333333345677888899874321    1212222222111     


Q ss_pred             HHHhhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeeccccccccccc
Q psy15052        291 SMFLRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  370 (422)
Q Consensus       291 ~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  370 (422)
                                 .....+..     ..+.|.|+|||||+.  .++  .++||+++|..+..  ..+++. .....+||+++
T Consensus       153 -----------~~~~~l~~-----~~~~~~G~SGgPv~~--~~g--~vVGI~s~g~~~~~--~~~v~~-~~~~~~~i~~~  209 (216)
T d2o8la1         153 -----------LKGEAMQY-----DLSTTGGNSGSPVFN--EKN--EVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQN  209 (216)
T ss_dssp             -----------EETTEEEE-----SCCCCTTCTTCEEEC--TTS--CEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHH
T ss_pred             -----------ccCCeEEE-----ecCcCCCCCCCcEEC--CCC--EEEEEEeeecCCCC--cceEec-CHHHHHHHHHh
Confidence                       22233332     346799999999983  233  39999999854321  123332 24578999998


Q ss_pred             CCC
Q psy15052        371 GDS  373 (422)
Q Consensus       371 i~~  373 (422)
                      |+.
T Consensus       210 i~~  212 (216)
T d2o8la1         210 IED  212 (216)
T ss_dssp             CTT
T ss_pred             hhh
Confidence            864

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.61  E-value=4.9e-17  Score=140.91  Aligned_cols=169  Identities=14%  Similarity=0.077  Sum_probs=96.8

Q ss_pred             CCCCce-EEEc---cCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEE
Q psy15052        156 LGRPVN-VYSN---NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRL  231 (422)
Q Consensus       156 ~~~~C~-GtLI---s~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL  231 (422)
                      .+..|+ |.++   +.+||||||||+...  ..+  .+     ..     ..+.+.+.....||+       +|+|++++
T Consensus        10 ~~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~--~~~--~~-----~~-----~~~~~~~~~~~~~~~-------~D~a~~~~   68 (187)
T d1hpga_          10 GGSRCSAAFNVTKGGARYFVTAGHCTNIS--ANW--SA-----SS-----GGSVVGVREGTSFPT-------NDYGIVRY   68 (187)
T ss_dssp             TTEEEECCEEEEETTEEEEEECHHHHTTC--SEE--ES-----ST-----TCCEEEEEEEEECSB-------SCEEEEEE
T ss_pred             CCCeEeeeEEEEcCCCcEEEEchhcCCCC--Cee--EE-----CC-----CCEEEEEEEeecccC-------Cchhheec
Confidence            356686 6776   567999999999762  221  11     11     135667777788875       69999999


Q ss_pred             CCCcccCCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEee
Q psy15052        232 ETPVEFAPNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGF  311 (422)
Q Consensus       232 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~  311 (422)
                      +.+......+.+   .      ......+.||.......+.    ..   .......+......... ........|...
T Consensus        69 ~~~~~~~~~~~~---~------~~~~~~~~g~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  131 (187)
T d1hpga_          69 TDGSSPAGTVDL---Y------NGSTQDISSAANAVVGQAI----KK---SGSTTKVTSGTVTAVNV-TVNYGDGPVYNM  131 (187)
T ss_dssp             CSSCCCCSEEEC---S------SSCEEECCEECCCCTTCEE----EE---EETTTEEEEEEEEEEEE-EEEETTEEEEEE
T ss_pred             ccCcccceeEec---C------CCcccccccceeeeccccc----cc---cccceeeeeeeeeeccc-cEEcCCccEecc
Confidence            987654443322   1      1223334454432211110    00   00000000000000000 011222334433


Q ss_pred             cCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        312 DNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       312 ~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      .......|.|||||||+.++     .++||+|++.+|+....+.+|++|+.++++.
T Consensus       132 ~~~~~~~~~GDSGgPl~~~~-----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         132 VRTTACSAGGDSGGAHFAGS-----VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEECCCCCTTCTTCEEEETT-----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             EEcCcccccCCCCCeEEECC-----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            34456789999999999764     3999999999988788889999999887653

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.37  E-value=6.7e-13  Score=120.00  Aligned_cols=193  Identities=16%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             CCCCcCe--EEEEEecCCCCceEEEccCCEEeecccCcCCC--CCceEEEEEeeeecccCC-CCCCcEEEeEEEEEECCC
Q psy15052        142 NTTQRPY--VKPLKESLGRPVNVYSNNEKVDDFSTESVNSL--LTSQIKIRVGEYDFSKLE-EPYPYQERGVVKKMVHPK  216 (422)
Q Consensus       142 ~~~~~Pw--~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~V~lG~~~~~~~~-~~~~~~~~~V~~i~iHp~  216 (422)
                      +..++||  ++.|...+...|+|+||++++||||+||+.+.  ....+.+..+........ .......+.+..+..++.
T Consensus        30 d~~~~p~~~v~~i~~~g~~~GTGflI~~~~ILTa~HVv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (246)
T d1qtfa_          30 DNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPY  109 (246)
T ss_dssp             CCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTT
T ss_pred             ccccCccccEEEEEeCCCceEEEEEEeCCeEEEchhecccCCcceEEEEEecCCcceeeeeeecCCCceEEEEEEEecCC
Confidence            4566777  77888777778999999999999999999652  233455555543332211 111234455666655543


Q ss_pred             CCCCCCCCceEEEEECCCcccCCCee---eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHH
Q psy15052        217 YNFFTYEYDLALVRLETPVEFAPNIV---PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMF  293 (422)
Q Consensus       217 y~~~~~~nDIALLkL~~pv~~s~~v~---PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~  293 (422)
                          ....|+|||+|+.+........   ++.+........++...++||.....    ............+        
T Consensus       110 ----~~~~DiAll~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~----~~~~~~~~~~~~~--------  173 (246)
T d1qtfa_         110 ----GQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYS----AYSLYQSQIEMFN--------  173 (246)
T ss_dssp             ----CTTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTS----TTCCEEEEEEESS--------
T ss_pred             ----cccCceEEEEeccccccccccccCceeeccccccccCCCEEEEEeCCCCCC----cceeeccceEeCC--------
Confidence                2246999999987665433222   22232233445688899999864321    1111221221111        


Q ss_pred             hhcCCcccccCceEEEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCC--------CCCceeeecccccc
Q psy15052        294 LRAGRYEFISDIFMCAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEA--------NLPGVCTRISKFVP  365 (422)
Q Consensus       294 ~~~~~~~~i~~~~lCa~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~--------~~p~vyt~V~~y~~  365 (422)
                                ...+       ..+...|+|||||+-  .+++  ||||++.+.+-...        ..-..|.....+.+
T Consensus       174 ----------~~~~-------~~~~~~G~SGgPv~n--~~G~--vVGI~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (246)
T d1qtfa_         174 ----------DSQY-------FGYTEVGNSGSGIFN--LKGE--LIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGD  232 (246)
T ss_dssp             ----------SSBE-------ESCCCGGGTTCEEEC--TTCC--EEEEEEEEETTTTEEEEEETTCBCCTTTSTTCCSSC
T ss_pred             ----------CceE-------EeeccCCCCCCcEEC--CCCe--EEEEEecccCCCCCccceEeecccchhhhhhHHHHH
Confidence                      1111       124567999999983  2333  99999976542111        11123444555666


Q ss_pred             cccccC
Q psy15052        366 WVLDTG  371 (422)
Q Consensus       366 WI~~~i  371 (422)
                      ||.+.+
T Consensus       233 ~~~~~~  238 (246)
T d1qtfa_         233 TLGNDL  238 (246)
T ss_dssp             BHHHHH
T ss_pred             HHHHHh
Confidence            765444

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.05  E-value=8.8e-11  Score=100.66  Aligned_cols=157  Identities=13%  Similarity=0.137  Sum_probs=85.1

Q ss_pred             CCCce-EEEcc---CCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEEC
Q psy15052        157 GRPVN-VYSNN---EKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLE  232 (422)
Q Consensus       157 ~~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~  232 (422)
                      +..|+ |..+.   ..+|||||||+.....    +.+|..+                 -..||       .+|+|||+++
T Consensus        11 ~~~ct~Gf~v~~~~~~~vlTA~Hc~~~~~~----~~vg~~~-----------------g~~~p-------~~D~Ali~~~   62 (181)
T d2sgaa_          11 GSRCSLGFNVSVNGVAHALTAGHCTNISAS----WSIGTRT-----------------GTSFP-------NNDYGIIRHS   62 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTCSE----ETTEEEE-----------------EEECS-------BSCEEEEEES
T ss_pred             CccEeeeEeEEECCCCEEEEChhhCCCCCe----EEEEecc-----------------CccCC-------ccceEEEEec
Confidence            44585 55553   2489999999976321    2222211                 11344       3799999999


Q ss_pred             CCcccCCCee-----eeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceE
Q psy15052        233 TPVEFAPNIV-----PICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFM  307 (422)
Q Consensus       233 ~pv~~s~~v~-----PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~l  307 (422)
                      .+......+.     .+-+........++.+...|+.....    ...+......+..        ....    ....++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~G~~~g~~----~g~v~~~~~~~~~--------~~~~----~~~~~~  126 (181)
T d2sgaa_          63 NPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGLR----SGSVTGLNATVNY--------GSSG----IVYGMI  126 (181)
T ss_dssp             CGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEEE----EEEEEEEEEEEEC--------GGGC----EEEEEE
T ss_pred             CcccccceeecCCCceeeecCCCcCCCCCEEEEeCCCCccc----ccceeeecceEEe--------cCCC----eEeeeE
Confidence            8776542211     12222222345588888888652110    0111111111110        0000    011111


Q ss_pred             EEeecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecccccccc
Q psy15052        308 CAGFDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWV  367 (422)
Q Consensus       308 Ca~~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~~y~~WI  367 (422)
                      -.     .....+|||||||+..+     .++||++.+..+........|+.|..++++.
T Consensus       127 ~~-----~~~~~~GdSGGPv~~~~-----~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         127 QT-----NVCAQPGDSGGSLFAGS-----TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             EE-----SCCCCTTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             EE-----eeeccCCCcCCeeEECC-----EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            11     22345899999999643     3999999987765555567899998877654

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.94  E-value=4.7e-10  Score=96.35  Aligned_cols=160  Identities=12%  Similarity=0.046  Sum_probs=81.2

Q ss_pred             CCCCce-EEEc---cCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEE
Q psy15052        156 LGRPVN-VYSN---NEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRL  231 (422)
Q Consensus       156 ~~~~C~-GtLI---s~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL  231 (422)
                      ++..|+ |..+   +.++|||||||+....  ..  .+.     ...    ...+.......||.       +|+||||+
T Consensus        10 ~~~~CT~Gf~v~~~~~~~ilTA~Hcv~~~~--~~--~~~-----~~~----~~~~g~~~~~~~~~-------~D~All~~   69 (185)
T d2qaaa1          10 STGRCSLGFNVRSGSTYYFLTAGHCTDGAT--TW--WAN-----SAR----TTVLGTTSGSSFPN-------NDYGIVRY   69 (185)
T ss_dssp             SSCEEECCEEEEETTEEEEEECHHHHTTCC--EE--ESS-----TTS----CSEEEEEEEEECSB-------SCEEEEEE
T ss_pred             CCCcEeeeEeEEECCccEEEECCCccCCCC--EE--EEE-----cCC----CeEeeeEEeccCCC-------CCeEEEEe
Confidence            345686 6665   4469999999997632  11  111     111    12334444445663       79999999


Q ss_pred             CCCcccCCCe-eeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEe
Q psy15052        232 ETPVEFAPNI-VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAG  310 (422)
Q Consensus       232 ~~pv~~s~~v-~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~  310 (422)
                      +.+....... ....+........++.+...|+..-    .....+......+..                .....++..
T Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~G~~v~~~G~~tg----~~~g~v~~~~~~~~~----------------~~~~~~~~~  129 (185)
T d2qaaa1          70 TNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG----THSGSVTALNATVNY----------------GGGDVVYGM  129 (185)
T ss_dssp             CCSSSCCCSEETTEECCEECCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEC----------------STTCEEEEE
T ss_pred             ccCCcccccccCceeccCCCcCCCCCEEEEccCCCC----cccceeEeeEEEEEc----------------CCCCeeeeE
Confidence            8754322111 1122222233456888888875421    001111111111110                111122211


Q ss_pred             ecCCCCCCCcCCCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeecc
Q psy15052        311 FDNGGRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS  361 (422)
Q Consensus       311 ~~~~~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V~  361 (422)
                      . ........|||||||+..+     .++||++.+..+........|+.|.
T Consensus       130 ~-~~~~~~~~GdSGGPv~~~~-----~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         130 I-RTNVCAEPGDSGGPLYSGT-----RAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             E-EESCCCCTTCTTCEEEETT-----EEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             E-EEeeeecCCcccceeEECC-----EEEEEEEEeecCCCCCceEEEEEHH
Confidence            1 1122344799999999643     3999999986654333345555544

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.5e-09  Score=95.76  Aligned_cols=51  Identities=39%  Similarity=0.906  Sum_probs=46.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.. .++|+|+|++|||..|+.++.|+|||||++|++||+++|.
T Consensus       183 gdsGgpl~~~~-~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         183 GDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             TTTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             CCcccccEEec-CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            47899998876 6799999999999999998999999999999999999984

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.8e-09  Score=96.22  Aligned_cols=52  Identities=52%  Similarity=1.025  Sum_probs=48.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+...+++|+|+||+|||..|+..+.|.||+||++|++||+++++
T Consensus       189 gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         189 GDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             CcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            4789999998888999999999999999988999999999999999999985

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.79  E-value=1.4e-09  Score=95.99  Aligned_cols=51  Identities=41%  Similarity=0.852  Sum_probs=48.0

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.+....++|+|+||+|||..|+..+.|.||+||++|.+||+++|
T Consensus       170 ~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~  220 (223)
T d1os8a_         170 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA  220 (223)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHH
T ss_pred             cccccceEEecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            578999999888899999999999999998889999999999999999987

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.2e-09  Score=94.92  Aligned_cols=51  Identities=43%  Similarity=0.892  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.. .++|+|+|++|||..|+..+.|.||+||++|++||+++|+
T Consensus       183 gdsGgpl~~~~-~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         183 GDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             TCTTCEEEEES-SSCEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             CCCCceeEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            56899998765 6899999999999999988899999999999999999985

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=3e-09  Score=94.35  Aligned_cols=52  Identities=38%  Similarity=0.894  Sum_probs=47.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++...++|+|+|++|||..  |+..+.|+|||||++|++||+++|+
T Consensus       186 gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~  239 (241)
T d1brup_         186 GDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             TCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            578999999988999999999999876  6677899999999999999999873

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.8e-09  Score=94.91  Aligned_cols=51  Identities=47%  Similarity=1.038  Sum_probs=46.8

Q ss_pred             CCCCCCcccc---CCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVK---GKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~---~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++|+||.+.   ...++|+|+|++|||..|+..+.|+|||||++|++||+++|
T Consensus       189 gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~WI~~~i  242 (255)
T d1z8ga1         189 GDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI  242 (255)
T ss_dssp             TCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHH
Confidence            5789999886   46789999999999999999999999999999999999987

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-09  Score=94.27  Aligned_cols=53  Identities=42%  Similarity=0.891  Sum_probs=47.6

Q ss_pred             ccCCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        369 DTGDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       369 ~~i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      ...++++||.+.. .++|+|+|++|||..|+..+.|.|||||++|++||+++|.
T Consensus       188 ~~gdsGgPl~~~~-~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~  240 (254)
T d2bz6h1         188 CKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             CGGGTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             ccCccccceEEcc-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            3367899998876 5899999999999999988999999999999999999873

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.9e-09  Score=93.68  Aligned_cols=51  Identities=39%  Similarity=0.928  Sum_probs=46.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++. .++|+|+|++|||..|+..+.|+|||||++|++||+++|.
T Consensus       189 gd~G~pl~~~~-~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~~~i~  239 (240)
T d1autc_         189 GDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (240)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             CccCceeEEcC-CCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            56889998887 5899999999999999888899999999999999999984

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=98.70  E-value=4.8e-09  Score=93.09  Aligned_cols=50  Identities=50%  Similarity=1.021  Sum_probs=45.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.+.. .++|+|+||+|||..|+..+.|.||+||++|++||++++
T Consensus       187 gdsG~Pl~~~~-~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         187 GDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TCTTCEEEECT-TSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CCCCCeEEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            47899998875 799999999999999999889999999999999999875

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.8e-09  Score=92.97  Aligned_cols=50  Identities=50%  Similarity=1.085  Sum_probs=45.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      -++++||.+.. +++|+|+|++|||..|+..+.|.||+||++|++||+++|
T Consensus       195 gdsG~pl~~~~-~~~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~WI~~~i  244 (247)
T d1rjxb_         195 GDSGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM  244 (247)
T ss_dssp             SCTTCEEEEEC-SSSEEEEEEECTTSCCBBTTBCEEEEEGGGGHHHHHHHH
T ss_pred             CCccceEEEee-CCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            46899998776 589999999999999998889999999999999999987

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.5e-09  Score=92.12  Aligned_cols=51  Identities=47%  Similarity=1.002  Sum_probs=46.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.. +++|+|+|++|||..|+..+.|.||+||++|++||+++|.
T Consensus       186 gdsG~pl~~~~-~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         186 GDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHC
T ss_pred             CCccceeEEec-CCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHC
Confidence            57899998776 6899999999999999988999999999999999999973

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1e-08  Score=91.19  Aligned_cols=52  Identities=40%  Similarity=0.928  Sum_probs=46.3

Q ss_pred             CCCCCCcccc-CCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVK-GKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~-~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+. ...++|+|+|++|||.. |+.++.|.|||||++|++||+++|+
T Consensus       187 gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~  240 (242)
T d1q3xa1         187 GDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             TCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             cccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHH
Confidence            6789999886 56789999999999975 9888899999999999999999873

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.63  E-value=8.7e-08  Score=82.52  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CCCCCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        315 GRDSCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       315 ~~~~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      ....++|||||||+..  +++  ++||+|.+..
T Consensus       135 ~~~~~~GdSGGPv~~~--~g~--vvGI~sgg~~  163 (198)
T d2h5ca1         135 NACMGRGDSGGSWITS--AGQ--AQGVMSGGNV  163 (198)
T ss_dssp             CSCCBTTCTTCEEECT--TCB--EEEEEEEECC
T ss_pred             eeeeecccccccEEcC--CCE--EEEEEccccc
Confidence            4557899999999864  222  9999998754

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=1.1e-08  Score=90.39  Aligned_cols=52  Identities=38%  Similarity=0.796  Sum_probs=46.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+...+++|+|+|++||+..  |...+.|+||+||++|++||+++|+
T Consensus       177 gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~  230 (232)
T d1fona_         177 GDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA  230 (232)
T ss_dssp             SCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred             cCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            568999999888899999999999754  7777889999999999999999873

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=91.06  Aligned_cols=51  Identities=47%  Similarity=1.042  Sum_probs=46.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.. .++|+|+|++|||..|+..+.|.|||||++|++||+++|.
T Consensus       192 gdsGgpl~~~~-~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~WI~~~i~  242 (243)
T d2fpza1         192 GDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP  242 (243)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHTTTSC
T ss_pred             CCCCCeEEEee-CCEEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            57899998766 6899999999999999988899999999999999999874

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.61  E-value=1.3e-08  Score=90.91  Aligned_cols=51  Identities=41%  Similarity=0.907  Sum_probs=45.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.. .++|+|+||+|||..  |...+.|.||+||++|++||+++|.
T Consensus       198 gd~G~Pl~~~~-~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         198 GDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             SCTTCEEEEES-SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCceEEee-CCEEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHHhcc
Confidence            57899998766 689999999999865  7778899999999999999999984

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=1.3e-08  Score=89.83  Aligned_cols=50  Identities=44%  Similarity=0.943  Sum_probs=45.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++|+.+.. .++|+|+|++|||..|+..+.|+|||||.+|++||+++|
T Consensus       185 gdsG~pl~~~~-~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i  234 (235)
T d1ekbb_         185 GDSGGPLMCQE-NNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFL  234 (235)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTC
T ss_pred             CCCCCccEEcc-CCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhh
Confidence            56889998876 579999999999999999899999999999999999986

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.8e-08  Score=89.15  Aligned_cols=51  Identities=33%  Similarity=0.703  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.. .++|+|+|++|||..|+..+.|.|||||++|++||+++|.
T Consensus       177 gdsG~pl~~~~-~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~  227 (234)
T d1si5h_         177 GDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL  227 (234)
T ss_dssp             TCTTCEEEEEC-SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             CccccceEEec-CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            46899998765 6899999999999999888899999999999999999873

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=1.3e-07  Score=83.01  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             cCeEEEEEecCC---CCceEEEccCC-EEeecccCcCCC-------CCceEEEEEeeeecccCCCCCCcEEEeEEEEEEC
Q psy15052        146 RPYVKPLKESLG---RPVNVYSNNEK-VDDFSTESVNSL-------LTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVH  214 (422)
Q Consensus       146 ~Pw~v~i~~~~~---~~C~GtLIs~~-~VLTAAhCv~~~-------~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iH  214 (422)
                      .|-+|.|.....   ...+|.+|+++ +|||+||++.+.       ....+.|.+..           ...+..+-+...
T Consensus        11 ~~svV~I~~~~~~~~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~d-----------g~~~~a~vi~~d   79 (221)
T d2z9ia2          11 VPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSD-----------GRTAPFTVVGAD   79 (221)
T ss_dssp             GGGEEEEEEEC----CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEETT-----------SCEECCEEEEEE
T ss_pred             CCcEEEEEeccCCcCcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcCC-----------ceeeeeeeEeec
Confidence            366788875432   34799999987 999999998531       12234444321           112233333333


Q ss_pred             CCCCCCCCCCceEEEEECCCcccCCCeeeeecCCCCCCCCCCeEEEEEecc
Q psy15052        215 PKYNFFTYEYDLALVRLETPVEFAPNIVPICLPGSDDLLIGENATVTGWGR  265 (422)
Q Consensus       215 p~y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GwG~  265 (422)
                      +       ..|||||++..+.....    ..+........+....+.|+-.
T Consensus        80 ~-------~~DlAll~~~~~~~~~~----~~~~~~~~~~~g~~v~~~g~p~  119 (221)
T d2z9ia2          80 P-------TSDIAVVRVQGVSGLTP----ISLGSSSDLRVGQPVLAIGSPL  119 (221)
T ss_dssp             T-------TTTEEEEECCSCCSCCC----CEECCGGGCCTTCEEEEEECGG
T ss_pred             c-------ccceeeeeeccccccee----eccccccccccCceeeeeeccC
Confidence            3       47999999987654221    2222223356788899998764

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.8e-08  Score=88.23  Aligned_cols=50  Identities=38%  Similarity=0.919  Sum_probs=43.5

Q ss_pred             CCCCCCccccC-CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKG-KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~-~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++++||.+.. ..++|+|+|++|||..|+..  |+|||||++|++||+++|.
T Consensus       189 gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~~--p~vft~v~~~~~WI~~~i~  239 (240)
T d2qy0b1         189 GDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEME  239 (240)
T ss_dssp             TCTTCEEEEECTTTCCEEEEEEEEECSSSSSS--CEEEEEGGGGHHHHHHHTT
T ss_pred             cccccceEEEeCCCCeEEEEEEEEECCCCCCC--CeEEEEHHHHHHHHHHHhc
Confidence            35789998874 45789999999999999764  9999999999999999984

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.2e-07  Score=80.48  Aligned_cols=82  Identities=18%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             ceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccC
Q psy15052        160 VNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFA  238 (422)
Q Consensus       160 C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s  238 (422)
                      =+|.+|+++ +|||+||++.+.  ..+.|....           ...+..+-+..++       ..|+|||+++.+-.  
T Consensus        44 GSGf~i~~~G~IlT~~HVv~~~--~~i~V~~~~-----------g~~~~a~vv~~d~-------~~dlall~~~~~~~--  101 (205)
T d1lcya2          44 GSGFVVAADGLIVTNAHVVADR--RRVRVRLLS-----------GDTYEAVVTAVDP-------VADIATLRIQTKEP--  101 (205)
T ss_dssp             EEEEEEETTTEEEECHHHHTTC--SEEEEECTT-----------SCEEEEEEEEEET-------TTTEEEEECCCSSC--
T ss_pred             eEEEEEECCCeEEEechhhhhh--hhccccccc-----------cccccceeeeeec-------ceeeEEEEecCCCC--
Confidence            378899987 999999999863  445554321           1223333333444       47999999876433  


Q ss_pred             CCeeeeecCCCCCCCCCCeEEEEEecc
Q psy15052        239 PNIVPICLPGSDDLLIGENATVTGWGR  265 (422)
Q Consensus       239 ~~v~PicLp~~~~~~~~~~~~v~GwG~  265 (422)
                        +.++.|....+...++.+++.|+-.
T Consensus       102 --~~~l~l~~~~~~~~G~~v~~iG~P~  126 (205)
T d1lcya2         102 --LPTLPLGRSADVRQGEFVVAMGSPF  126 (205)
T ss_dssp             --CCCCCBCCGGGCCTTCEEEECCCTT
T ss_pred             --CcEEEccccccCCCCCEEEEEECCc
Confidence              3345554444456688888888753

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=1e-07  Score=84.20  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             CceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCccc
Q psy15052        159 PVNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF  237 (422)
Q Consensus       159 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~  237 (422)
                      .-+|.+|+++ ||||++|++.+.  ..+.|....           ...+..+-+...+       ..|+|||+++.+-  
T Consensus        57 ~GSGfiI~~~G~IlTn~HVv~~~--~~~~v~~~~-----------~~~~~a~v~~~~~-------~~dlall~v~~~~--  114 (228)
T d1l1ja_          57 LGSGFIFDPEGYILTNYHVVGGA--DNITVTMLD-----------GSKYDAEYIGGDE-------ELDIAVIKIKASD--  114 (228)
T ss_dssp             EEEEEEEETTTEEEEEHHHHSSC--SSCEEECTT-----------SCEEEBCCCEEET-------TTTEEEEEBCCSS--
T ss_pred             ceEEEEeecCceEEeeccccccc--ccceEEeec-----------ceeEeEEEeeecc-------cccceeeEeecCC--
Confidence            3589999876 999999999763  334443221           1122222122222       4799999997543  


Q ss_pred             CCCeeeeecCCCCCCCCCCeEEEEEec
Q psy15052        238 APNIVPICLPGSDDLLIGENATVTGWG  264 (422)
Q Consensus       238 s~~v~PicLp~~~~~~~~~~~~v~GwG  264 (422)
                       ....++.|........|+.+++.||-
T Consensus       115 -~~~~~l~l~~s~~~~~G~~V~aiG~P  140 (228)
T d1l1ja_         115 -KKFPYLEFGDSDKVKIGEWAIAIGNP  140 (228)
T ss_dssp             -SCCCCCEECCGGGCCTTCEEEEEECT
T ss_pred             -CCCceEEccCccccccCCcEEEEECC
Confidence             23445666544445679999999985

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.53  E-value=2.5e-08  Score=88.10  Aligned_cols=51  Identities=35%  Similarity=0.770  Sum_probs=44.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.. +++|+|+||+||+..  |...+.|+|||||++|++||+++|.
T Consensus       186 gDsG~pl~~~~-~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~  238 (240)
T d1gvkb_         186 GDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA  238 (240)
T ss_dssp             TCTTCEEEEEE-TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CccccceEEEE-CCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHh
Confidence            57899997776 679999999999865  6677789999999999999999873

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=98.52  E-value=2.9e-08  Score=86.96  Aligned_cols=46  Identities=37%  Similarity=0.733  Sum_probs=40.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      .++++||.+    .+|+|+|++|||..|+..+.|.|||||++|++||+.+
T Consensus       178 ~dsG~pl~~----~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         178 GDSGGPIVD----SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             TCTTCEEEC----TTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             cccCCceEe----cCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence            467899975    3479999999999999999999999999999999754

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.8e-08  Score=90.96  Aligned_cols=51  Identities=35%  Similarity=0.819  Sum_probs=41.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--cc--------CCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CA--------EANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~--------~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      -++|+||.+.. .++|+|+||+|||..  |.        ....|.|||||++|++||+++|+
T Consensus       220 GDSGgPL~~~~-~~~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~  280 (287)
T d1rrka1         220 GDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  280 (287)
T ss_dssp             GGTTCEEEEEE-TTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             CCccCCeEEec-CCeEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            46799998875 689999999999854  32        23468899999999999999985

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=98.48  E-value=4.4e-08  Score=86.33  Aligned_cols=51  Identities=37%  Similarity=0.858  Sum_probs=44.6

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecC--cccCCCCCceEEEccCchhHHhhhc
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGI--GCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~--~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      ..++++||.+.. +++|+|+||+||+.  .|+..+.|.|||||++|++||+++|
T Consensus       184 ~gdsGgpl~~~~-~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         184 NGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             TTCTTCEEEEEE-TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             ccccccceEEEE-CCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            357899998876 57999999999964  5888889999999999999999986

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.4e-08  Score=87.50  Aligned_cols=47  Identities=36%  Similarity=0.726  Sum_probs=41.9

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEcc-CchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRIS-KFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~-~~~~Wi~~~~~  422 (422)
                      .++|+||.+.     ++|+|++|||..|+..+.|.|||||+ +|++||+++|.
T Consensus       188 gDsGgPl~~~-----~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~i~  235 (240)
T d1mzaa_         188 GDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             TCTTCEEEET-----TEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             CCCCCeEEEC-----CEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHHcc
Confidence            4688999874     58999999999999888999999998 79999999984

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.9e-08  Score=87.58  Aligned_cols=48  Identities=38%  Similarity=0.972  Sum_probs=42.2

Q ss_pred             CCCCCCccccC--CCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKG--KDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~--~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++|+||.+..  ..++|+|+|++|||..|..   |.|||||++|.+||+++|
T Consensus       206 gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~~---p~vft~V~~~~~WI~~~i  255 (259)
T d1elva1         206 GDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTM  255 (259)
T ss_dssp             TCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EEEEEEGGGGHHHHHHHH
T ss_pred             CCcCCeEEEEecCCCcEEEEEEEEEeCCCCCC---ceEEeEHHHHHHHHHHHH
Confidence            46899998864  4568999999999999864   899999999999999987

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=98.42  E-value=6e-08  Score=85.31  Aligned_cols=49  Identities=29%  Similarity=0.667  Sum_probs=42.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++|+.+.   ++|+|+|++||+.. |+..+.|.|||||++|++||+++|+
T Consensus       178 gdsGgp~~~~---~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~  227 (230)
T d2hlca_         178 GDSGGPFVLS---DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             TCTTCEEEEG---GGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             cccCCCeEEC---CCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            5678999875   46899999999886 4677889999999999999999985

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=7e-08  Score=84.31  Aligned_cols=47  Identities=47%  Similarity=1.012  Sum_probs=41.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.     |+|+|++|||..|+..+.|+|||||++|++||+++|.
T Consensus       175 gd~g~pl~~~-----~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~  221 (223)
T d1hj9a_         175 GDSGGPVVCS-----GKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHT
T ss_pred             CCCCceeEEe-----CEEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            4677888764     5799999999999998899999999999999999874

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=98.42  E-value=5.3e-08  Score=85.55  Aligned_cols=47  Identities=47%  Similarity=1.020  Sum_probs=42.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++     |+|+||+|||..|+..+.|.|||||++|++||+++|+
T Consensus       179 gd~G~Pl~~~-----~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~  225 (228)
T d1fxya_         179 GDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA  225 (228)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             CccCccEEEe-----CEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            4688999875     4799999999999888899999999999999999874

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=98.41  E-value=7e-08  Score=84.43  Aligned_cols=47  Identities=45%  Similarity=0.948  Sum_probs=42.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++     +.|+|++|||..|+..+.|.|||||++|++||+++|.
T Consensus       174 gdsGgPl~~~-----~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  220 (222)
T d1hj8a_         174 GDSGGPVVCN-----GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCcccEEEEC-----CEEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            5789999875     4699999999999998899999999999999999873

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.2e-06  Score=75.95  Aligned_cols=141  Identities=14%  Similarity=0.094  Sum_probs=78.1

Q ss_pred             ceEEEccCC-EEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccC
Q psy15052        160 VNVYSNNEK-VDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFA  238 (422)
Q Consensus       160 C~GtLIs~~-~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s  238 (422)
                      -+|.+|+++ ||||++|.+.+  ...+.|.+..           ...+..+-+..++       .+|+|||++..+..+ 
T Consensus        38 GSGfvi~~~G~IlTn~HVV~~--~~~i~v~~~~-----------~~~~~~~~~~~~~-------~~Dlall~~~~~~~~-   96 (210)
T d2qf3a1          38 GSGVIMDQRGYIITNKHVIND--ADQIIVALQD-----------GRVFEALLVGSDS-------LTDLAVLKINATGGL-   96 (210)
T ss_dssp             EEEEECSTTCEEEEEHHHHTT--CSEEEEECTT-----------SCEEECEEEEEET-------TTTEEEEECCCSSCC-
T ss_pred             eEEEEEECCceEEechhhccc--cccccccccc-----------ccceeeEEecccc-------ccchhheeccccccc-
Confidence            689999976 99999999976  3556665421           1233444444444       379999999875432 


Q ss_pred             CCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCC
Q psy15052        239 PNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS  318 (422)
Q Consensus       239 ~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~  318 (422)
                         .+..+........+..+++.|+......     .................         .....++..     ....
T Consensus        97 ---~~~~~~~~~~~~~g~~v~~~G~p~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~i~~-----~a~i  154 (210)
T d2qf3a1          97 ---PTIPINARRVPHIGDVVLAIGNPYNLGQ-----TITQGIISATGRIGLNP---------TGRQNFLQT-----DASI  154 (210)
T ss_dssp             ---CCCCCCTTCCCCTTBEEEEEECGGGSSS-----EEEEEEEEESCC------------------CCEEE-----CSCC
T ss_pred             ---cccccccccccccceEEEEecccccccc-----ccccccceeeeeeeecc---------ccceeEEEE-----eeeE
Confidence               2233333344567888999998642211     11111111111111100         011123333     1234


Q ss_pred             CcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        319 CQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       319 C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      -.|.|||||+-.  +|+  |+||++....
T Consensus       155 ~~G~SGGPv~n~--~G~--vVGI~~~~~~  179 (210)
T d2qf3a1         155 NHGNSGGALVNS--LGE--LMGINTLSFD  179 (210)
T ss_dssp             CTTCTTCEEEET--TCC--EEEEEEEEC-
T ss_pred             EeccCCCceEee--cCE--EEEEEEEEee
Confidence            469999999864  233  9999988654

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7.2e-08  Score=84.27  Aligned_cols=47  Identities=34%  Similarity=0.791  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.     |+|+|++|||.. |+..+.|.|||||++|++||+++|+
T Consensus       181 gdsG~Pl~~~-----~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         181 GDSGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTTTCEEEET-----TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCcCccEEEc-----CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            5789999874     589999999866 8878899999999999999999985

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9e-08  Score=83.30  Aligned_cols=47  Identities=34%  Similarity=0.693  Sum_probs=41.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.++     |+|+||+||+.. |+..+.|+|||||++|++||+++|.
T Consensus       171 gdsG~Pl~~~-----~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         171 GDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TCTTCEEEET-----TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             cccCCCEEEC-----CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            4689999885     579999999854 8888889999999999999999974

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=98.36  E-value=9.6e-08  Score=83.76  Aligned_cols=48  Identities=38%  Similarity=0.713  Sum_probs=41.6

Q ss_pred             cCCCCCCccccCCCCceeEEeeeeecCcc-cCCCCCceEEEccCchhHHhhhcC
Q psy15052        370 TGDSGGPLQVKGKDGRYFLAGIISWGIGC-AEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       370 ~i~~~~pl~~~~~~~~~~l~g~~s~g~~~-~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      ..++|+||.+.     |+|+|++|||..| +..+.|+||+||++|.+||+++|+
T Consensus       175 ~gdsG~Pl~~~-----~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g  223 (226)
T d1azza_         175 NGDSGGPLNYN-----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG  223 (226)
T ss_dssp             TTCTTCEEEET-----TEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHC
T ss_pred             cCCcCCCEEEc-----CEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhC
Confidence            36789999764     5899999999886 477789999999999999999985

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.36  E-value=9.5e-08  Score=84.17  Aligned_cols=46  Identities=39%  Similarity=0.779  Sum_probs=40.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++|+||.++     |+|+||+|||.. |+..+.|.|||||++|++||+++|
T Consensus       185 gdsG~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i  231 (235)
T d1tona_         185 GDSGGPLICD-----GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM  231 (235)
T ss_dssp             TCTTCEEEET-----TEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHH
T ss_pred             CCcCCeEEEc-----CEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            5688999773     689999999975 888889999999999999999987

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=98.36  E-value=1.2e-07  Score=82.57  Aligned_cols=46  Identities=46%  Similarity=0.803  Sum_probs=40.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.     |+|+||+|||..|.. +.|.|||||++|++||+++|.
T Consensus       176 ~d~G~pl~~~-----~~L~GI~s~~~~c~~-~~p~vyt~v~~y~~WI~~~i~  221 (222)
T d1eq9a_         176 GDSGGPLVAN-----GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSC
T ss_pred             cCCcCCEEEc-----CEEEEEEEECCCCCC-CCCcEEEEHHHHHHHHHHHhc
Confidence            5788999874     579999999999864 479999999999999999984

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-07  Score=82.25  Aligned_cols=47  Identities=43%  Similarity=0.797  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC-cccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI-GCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~-~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++     ++|+|++||+. +|+..+.|.|||||++|++||+++|.
T Consensus       174 gd~G~pl~~~-----~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         174 GDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CccCCCEEEe-----CEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            4789999875     48999999986 58888899999999999999999984

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=82.58  Aligned_cols=45  Identities=44%  Similarity=0.855  Sum_probs=39.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.     ++|+||+|||..|+..  |+|||||++|++||+++|.
T Consensus       179 gdsGgPl~~~-----~~l~Gi~S~g~~~~~~--p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         179 GDSGGPLLCN-----NVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCTTCCS--CEEEEEGGGSHHHHHHHHC
T ss_pred             cCcCCeEEEc-----CEEEEEEEEcCCCCCC--CcEEEEHHHhHHHHHHHHc
Confidence            4788999874     4899999999988764  9999999999999999874

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.4e-07  Score=82.38  Aligned_cols=47  Identities=40%  Similarity=0.919  Sum_probs=41.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++.     +|+|++|||.. |+..+.|.|||||++|++||+++|.
T Consensus       174 gd~G~Pl~~~~-----~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         174 GDSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             TTTTCEEEETT-----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCcEEECC-----EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            57899998754     69999999875 8888899999999999999999984

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.3e-07  Score=82.99  Aligned_cols=47  Identities=45%  Similarity=0.866  Sum_probs=41.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++     |+|+|++|||.. |+..+.|+|||||++|++||+++|+
T Consensus       178 ~d~G~pl~~~-----~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (228)
T d1sgfa_         178 HDSGGPLICD-----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA  225 (228)
T ss_dssp             CCTTCEEEET-----TEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHH
T ss_pred             CCcCCcEEEe-----CEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            5688899874     589999999964 8888899999999999999999873

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.6e-07  Score=82.08  Aligned_cols=47  Identities=49%  Similarity=1.029  Sum_probs=41.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++|+.+.     |+|+|++|||..|+..+.|.|||||++|++||+++|.
T Consensus       175 gd~g~pl~~~-----~~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~  221 (223)
T d1j16a_         175 GDSGGPVVCN-----GELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA  221 (223)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CccCCcEEEe-----eEEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHh
Confidence            4677888764     4799999999999998899999999999999999873

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1.1e-07  Score=83.27  Aligned_cols=46  Identities=46%  Similarity=0.988  Sum_probs=41.1

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.++     |+|+|++|||.. |+..+.|.||+||++|.+||+++|
T Consensus       178 gd~G~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i  224 (225)
T d1npma_         178 GDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM  224 (225)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHH
T ss_pred             CCCCceEEEc-----cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence            4689999884     689999999976 888889999999999999999987

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.5e-07  Score=82.41  Aligned_cols=45  Identities=42%  Similarity=0.786  Sum_probs=39.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.     ++|+|++|||..|+.  .|.|||||++|++||+++|.
T Consensus       182 gdsGgPl~~~-----~~l~Gi~S~g~~~~~--~p~vyt~v~~y~~WI~~~i~  226 (227)
T d1fi8a_         182 GDSGGPLVCK-----KVAAGIVSYGQNDGS--TPRAFTKVSTFLSWIKKTMK  226 (227)
T ss_dssp             TCTTSEEEET-----TEEEEEEEEEETTCC--SCEEEEEGGGGHHHHHHHHC
T ss_pred             CCcCCEEEEC-----CEEEEEEEEcCCCCC--CCeEEEEHHHHHHHHHHHHc
Confidence            4789999873     589999999988864  69999999999999999873

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=2.2e-07  Score=81.15  Aligned_cols=45  Identities=44%  Similarity=0.784  Sum_probs=39.6

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.++     ++|+|++|||..|..  .|.|||||++|++||+++|.
T Consensus       180 ~dsGgpl~~~-----~~l~Gi~s~g~~~~~--~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         180 GDSGGPLVCN-----GVAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCTTCC--SCEEEEEGGGTHHHHHHHTC
T ss_pred             CCCCCeEEEc-----CEEEEEEEEcCCCCC--CCeEEEEHHHHHHHHHHHhC
Confidence            5789999874     489999999998864  69999999999999999985

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.8e-07  Score=82.47  Aligned_cols=46  Identities=39%  Similarity=0.770  Sum_probs=40.5

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.+.     |+|+|++|||.. |+..+.|.|||||++|.+||+++|
T Consensus       187 gdsG~pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i  233 (237)
T d1ao5a_         187 DDSGGPLICD-----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM  233 (237)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHH
T ss_pred             CCCCCeeEEc-----cEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            4678898774     589999999865 888889999999999999999987

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=98.28  E-value=1.8e-07  Score=82.40  Aligned_cols=47  Identities=34%  Similarity=0.797  Sum_probs=40.8

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.+.     |+|+|++|||.. |+....|.|||||++|++||+++|+
T Consensus       178 g~~G~Pl~~~-----~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~  225 (234)
T d1op0a_         178 GDSGGPLICN-----GQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA  225 (234)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHH
T ss_pred             CCCCceEEEc-----CEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            4678999774     579999999865 8888899999999999999999973

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.2e-07  Score=81.27  Aligned_cols=45  Identities=29%  Similarity=0.567  Sum_probs=38.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.++     |+|+||+|||..|+.. .|.|||||++|.+||+++|
T Consensus       173 gdsG~Pl~~~-----~~l~Gi~S~~~~~c~~-~p~v~t~v~~y~~WI~~~i  217 (225)
T d1a7sa_         173 GDGGTPLVCE-----GLAHGVASFSLGPCGR-GPDFFTRVALFRDWIDGVL  217 (225)
T ss_dssp             TCTTCEEEET-----TEEEEEEEEECSSTTS-SCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCCEEEe-----CEEEEEEEECCCCCCC-CCCEEEEHHHHHHHHHHHH
Confidence            4678999884     5899999999876543 5999999999999999987

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.3e-07  Score=81.44  Aligned_cols=47  Identities=36%  Similarity=0.778  Sum_probs=40.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc--ccCCCCCceEEEcc-CchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG--CAEANLPGVCTRIS-KFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~--~~~~~~~~v~~~v~-~~~~Wi~~~~~  422 (422)
                      .++++||.+.     |+|+||+|||..  |...+.|+|||||+ +|++||+++|.
T Consensus       182 gdsG~Pl~~~-----~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~  231 (232)
T d1orfa_         182 GDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK  231 (232)
T ss_dssp             TCTTCEEEET-----TEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             ccCCCeEEEc-----CEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhC
Confidence            4678999875     489999999854  77888999999997 79999999874

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-07  Score=81.97  Aligned_cols=44  Identities=45%  Similarity=0.799  Sum_probs=38.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.+.     |+|+||+|||..|..  .|.|||||++|.+||+++|
T Consensus       178 gDsG~PL~~~-----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i  221 (224)
T d1nn6a_         178 GDSGGPLLCA-----GVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQIL  221 (224)
T ss_dssp             CCTTCEEEET-----TEEEEEEEECCTTCC--SCEEEEEHHHHHHHHHHHH
T ss_pred             CCccceEEEC-----CEEEEEEEECCCCCC--CCeEEEEHHHHHHHHHHHH
Confidence            4789999874     589999999988765  5999999999999999987

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.21  E-value=2.5e-07  Score=80.91  Aligned_cols=45  Identities=42%  Similarity=0.800  Sum_probs=39.3

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++|+||.+.     |+|+|++|||..|+.  .|.|||||++|.+||+++|.
T Consensus       180 ~d~G~Pl~~~-----~~l~Gi~S~g~~~~~--~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         180 GDSGGPLLCA-----GVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTTTCEEEET-----TEEEEEEEECCTTCC--SCEEEEEHHHHHHHHHHHHC
T ss_pred             CCcCCeEEEc-----CEEEEEEEECCCCCC--CCeEEEEHHHHHHHHHHHhC
Confidence            5688999884     589999999988764  59999999999999999874

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.20  E-value=2.5e-07  Score=81.39  Aligned_cols=46  Identities=39%  Similarity=0.712  Sum_probs=40.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-ccCCCCCceEEEccCchhHHhhhc
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-CAEANLPGVCTRISKFVPWVLDTV  421 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~~~~~~~~v~~~v~~~~~Wi~~~~  421 (422)
                      .++++||.++     |+|+|++|||.. |+..+.|.|||||++|++||+++|
T Consensus       187 gdsG~pl~~~-----~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i  233 (237)
T d1gvza_         187 GDSGGALICD-----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI  233 (237)
T ss_dssp             GGTTCEEEET-----TEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHH
T ss_pred             CCCCCcEEEc-----CEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            3578999875     489999999976 777788999999999999999987

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-07  Score=82.35  Aligned_cols=45  Identities=42%  Similarity=0.823  Sum_probs=39.2

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHhhhcC
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVLDTVT  422 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~~~~~  422 (422)
                      .++++||.++     |+|+||+|||..|+.  .|.|||||++|++||+++|.
T Consensus       181 gdsG~pl~~~-----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i~  225 (227)
T d1fq3a_         181 GDSGGPLVCN-----KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMK  225 (227)
T ss_dssp             TCTTCBCBSS-----SSCCCEECCCCTTSC--SCCCEECHHHHHHHHHHHTT
T ss_pred             CCCCceEEEe-----CEEEEEEEEcCCCCC--CCcEEEEHHHHHHHHHHHHH
Confidence            5778999774     589999999999875  49999999999999999873

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=6.5e-06  Score=73.13  Aligned_cols=141  Identities=18%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             ceEEEccC--CEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCccc
Q psy15052        160 VNVYSNNE--KVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEF  237 (422)
Q Consensus       160 C~GtLIs~--~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~  237 (422)
                      =+|.+|++  .+|||.+|.+.+  ...+.|.+..           ...+..+-+...+       ..|+|||+++.+-  
T Consensus        78 GSG~iI~~~~g~IlTn~HVv~~--~~~~~v~~~~-----------~~~~~a~~~~~d~-------~~dlavl~i~~~~--  135 (249)
T d1ky9a2          78 GSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSD-----------GRKFDAKMVGKDP-------RSDIALIQIQNPK--  135 (249)
T ss_dssp             EEEEEEETTTTEEEEEHHHHTT--EEEEEEEETT-----------SCEEEEEEEEEET-------TTTEEEEEESSCC--
T ss_pred             ccEEEEeccCceEEeecccccc--ceeeeeeecc-----------cccccceeeEecc-------chhhceeeecccc--
Confidence            47899985  499999999975  3455555432           1244555555544       3799999998643  


Q ss_pred             CCCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCC
Q psy15052        238 APNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRD  317 (422)
Q Consensus       238 s~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~  317 (422)
                        .+.++.|........|+.+++.|+-...     ................-..         .....++=.     ...
T Consensus       136 --~~~~~~l~~~~~~~~G~~v~aiG~P~g~-----~~tvt~~~~~~~~~~~~~~---------~~~~~~iqt-----da~  194 (249)
T d1ky9a2         136 --NLTAIKMADSDALRVGDYTVAIGNPFGL-----GETVTSGIVSALGRSGLNA---------ENYENFIQT-----DAA  194 (249)
T ss_dssp             --SCCCCCBCCGGGCCTTCEEEEEECTTSS-----SCEEEEEEEEEESSCC--------------CCCCEEE-----SCC
T ss_pred             --cceEEEcCCcCcCCcCCEEEEEeccccc-----CCceeecceeecccccccC---------ccccceEEE-----eee
Confidence              3456667555556679999999975311     1111222222111110000         011122222     223


Q ss_pred             CCcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        318 SCQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       318 ~C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      .-.|.|||||+-.  +|+  |+||++....
T Consensus       195 i~~GnSGGPl~n~--~G~--vIGI~t~~~~  220 (249)
T d1ky9a2         195 INRGNAGGALVNL--NGE--LIGINTAILA  220 (249)
T ss_dssp             CTTSCCCSEEECT--TSC--EEEEEECSST
T ss_pred             ecCCCCCceEECC--CCE--EEEEEEEEec
Confidence            4579999999853  333  9999988654

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=98.00  E-value=2.2e-06  Score=75.16  Aligned_cols=48  Identities=40%  Similarity=0.832  Sum_probs=39.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecC----cccCCCCCceEEEccCchhHHhhh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGI----GCAEANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~----~~~~~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      .++++||.+..  +.|+|+|++||..    .|+..+.|+|||||++|++||++.
T Consensus       189 g~sGgpl~~~~--~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~n  240 (241)
T d1m9ua_         189 GDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN  240 (241)
T ss_dssp             TCTTCEEEEES--SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred             CCCCcceEEec--CCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHc
Confidence            36789997753  4678999998754    377778999999999999999975

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=97.91  E-value=6.1e-05  Score=65.21  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             EccCCEEeecccCcCCCCCceEEEEE--eeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccCCCe
Q psy15052        164 SNNEKVDDFSTESVNSLLTSQIKIRV--GEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFAPNI  241 (422)
Q Consensus       164 LIs~~~VLTAAhCv~~~~~~~~~V~l--G~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s~~v  241 (422)
                      ++...||||.||.+.+.. ..+.+..  |.+...           .+..+.+++.     ...||||||+..+..  +. 
T Consensus        33 i~~~~~IiTN~HVv~~~~-~~~~i~~~~G~~~~~-----------~~~~i~i~~~-----~~~DLaiik~~~~~~--p~-   92 (219)
T d1lvmb_          33 IGFGPFIITNKHLFRRNN-GTLLVQSLHGVFKVK-----------NTTTLQQHLI-----DGRDMIIIRMPKDFP--PF-   92 (219)
T ss_dssp             EEETTEEEECGGGGSCCS-EEEEEEETTEEEEES-----------CGGGSEEEEC-----TTSSCEEEECCTTSC--CC-
T ss_pred             EEeCCEEEECccccccCC-ceEEEEEcCCcEeec-----------ceEEEEeeec-----CCccEEEEEcCCCCC--Cc-
Confidence            567889999999997532 3344433  222111           1111222322     136999999976432  11 


Q ss_pred             eeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCCCcC
Q psy15052        242 VPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDSCQG  321 (422)
Q Consensus       242 ~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~C~G  321 (422)
                        +.|....++..++.+.++|+...... . .   ..  +....  .   ...      .-...++-.     ....-.|
T Consensus        93 --~~l~~~~~~~~Ge~V~aiG~p~~~~~-~-~---~~--v~~~~--~---~~~------~~~~~~~~~-----~~~t~~G  147 (219)
T d1lvmb_          93 --PQKLKFREPQREERICLVTTNFQTKS-M-S---SM--VSDTS--C---TFP------SSDGIFWKH-----WIQTKDG  147 (219)
T ss_dssp             --CSCCCBCCCCTTCEEEEEEECCSCGG-G-C---EE--ECCCE--E---CEE------ETTTTEEEE-----CBCCCTT
T ss_pred             --ceecccCCCCcCCEEEEEEccCCCCc-e-E---EE--Eeccc--e---eec------cCCCceEEE-----EEEcCCC
Confidence              23333344567999999997532110 0 0   00  00000  0   000      001122222     2345679


Q ss_pred             CCCCCceeecCCCcEEEeeEEeecccccCCCCCceeeec-cccccccccc
Q psy15052        322 DSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRI-SKFVPWVLDT  370 (422)
Q Consensus       322 DSGgPLv~~~~~~~~~lvGV~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~  370 (422)
                      +|||||+-. .+|  .++||.+.+..-.   .-..|+-| ..+.++|.+.
T Consensus       148 nSGGPlvd~-~dG--~VVGIhs~~~~~~---~~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         148 QCGSPLVST-RDG--FIVGIHSASNFTN---TNNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             CTTCEEEET-TTC--CEEEEEEEEETTS---SSEEEEECCTTHHHHHHCG
T ss_pred             CCCCceEEc-CCC--EEEEEEEeeeccc---ceEEEEecCHHHHHHHhhc
Confidence            999999963 223  2999999864322   23457777 4477777665

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.76  E-value=6e-05  Score=64.14  Aligned_cols=157  Identities=11%  Similarity=-0.018  Sum_probs=79.8

Q ss_pred             CceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEEEECCCcccC
Q psy15052        159 PVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALVRLETPVEFA  238 (422)
Q Consensus       159 ~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALLkL~~pv~~s  238 (422)
                      .|.|+.|..+++||++|.+... ...  +.++........    .........++..     ....|||||+|++...+.
T Consensus        24 ~g~gl~v~g~~~l~~~H~~~~~-~~~--i~~~~~~~~~~~----~~~~~~~~~v~~~-----d~~~Dlall~l~~~~~~~   91 (199)
T d2bhga1          24 ICCATGVFGTAYLVPRHLFAEK-YDK--IMLDGRAMTDSD----YRVFEFEIKVKGQ-----DMLSDAALMVLHRGNKVR   91 (199)
T ss_dssp             EEEEEEEEBTEEEEEHHHHTSC-CSE--EEETTEEECGGG----EEEECCEECCSSS-----CEECSEEEEEESSSCCBC
T ss_pred             EeEEEEEECCEEEECCcEeecC-CCE--EEEeeeEEEEEe----ccceEEEEEEEec-----CCCccEEEEEcCCCCcCC
Confidence            4889999999999999998652 222  233322221110    1111111112221     235799999998765544


Q ss_pred             CCeeeeecCCCCCCCCCCeEEEEEecccCCCCCCCCCceEEEEeccChhhHHHHHhhcCCcccccCceEEEeecCCCCCC
Q psy15052        239 PNIVPICLPGSDDLLIGENATVTGWGRLSEGGSLPPVLQKVTVPIVSNEKCRSMFLRAGRYEFISDIFMCAGFDNGGRDS  318 (422)
Q Consensus       239 ~~v~PicLp~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~i~~~~lCa~~~~~~~~~  318 (422)
                      +...  -+....+...++...+.|+....     ...+....+.....  -.....  +   ......+-..     ...
T Consensus        92 ~~~~--~~~~~~~~~~g~~v~~ig~p~~~-----~~~~~~~~~~~~~~--~~~~~~--g---~~~~~~~~y~-----a~t  152 (199)
T d2bhga1          92 DITK--HFRDTARMKKGTPVVGVVNNADV-----GRLIFSGEALTYKD--IVVSMD--G---DTMPGLFAYK-----AAT  152 (199)
T ss_dssp             CCGG--GBCSSCEECTTCEEEEEEEETTT-----EEEEEEEEESSCEE--CCC----------CCTTEEEEE-----CCC
T ss_pred             cccc--cccccccccccceEEEEEcCCCC-----CceEEEEEEEEecc--eeecCC--C---ccccCEEEEE-----ecc
Confidence            4322  22333344568888888876311     11111111111100  000000  0   0112334332     123


Q ss_pred             CcCCCCCCceeecCCCcEEEeeEEeeccc
Q psy15052        319 CQGDSGGPLQVKGKDGRYFLAGIISWGIG  347 (422)
Q Consensus       319 C~GDSGgPLv~~~~~~~~~lvGV~S~g~~  347 (422)
                      -.|++||||+.. .++...++||.+.|.+
T Consensus       153 ~~G~cGgplv~~-~~~~~~IvGih~aG~~  180 (199)
T d2bhga1         153 RAGYAGGAVLAK-DGADTFIVGTHSAGGN  180 (199)
T ss_dssp             CTTCTTCEEEEE-ETTEEEEEEEEEEEET
T ss_pred             CCCCcCCeEEEe-cCCeEEEEEEEeCCCC
Confidence            469999999876 3455679999998743

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=96.48  E-value=0.0001  Score=62.99  Aligned_cols=46  Identities=15%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccC-CCCCceEEEccCchhHHhhh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAE-ANLPGVCTRISKFVPWVLDT  420 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~-~~~~~v~~~v~~~~~Wi~~~  420 (422)
                      -++|+||..    ..+.|+|+.|+|..|+. +..|.+|++|.+|++||+|.
T Consensus       169 G~SGgPl~~----~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~~  215 (215)
T d1p3ca_         169 GNSGSAMLD----QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ  215 (215)
T ss_dssp             TCTTCEEEC----TTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHTC
T ss_pred             CCccCeEEC----CCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHcC
Confidence            468899973    34689999999988654 44588999999999999984

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=96.19  E-value=0.00047  Score=60.99  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCc-c--cCCCCCceEEEccCchhHH
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIG-C--AEANLPGVCTRISKFVPWV  417 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~-~--~~~~~~~v~~~v~~~~~Wi  417 (422)
                      -++++||.++..    .++|++|||.+ |  +..+.|+||+||++|-.||
T Consensus       192 GDSGGPL~~~~g----~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~  237 (263)
T d1arba_         192 GSSGSPIYSPEK----RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGG  237 (263)
T ss_dssp             TCTTCEEECTTS----CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTT
T ss_pred             CCCcceEEecCC----CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccC
Confidence            478999987554    37777777643 3  2235899999999885555

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=96.17  E-value=0.013  Score=48.21  Aligned_cols=71  Identities=10%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             EEEEecCCCCceEEEccCCEEeecccCcCCCCCceEEEEEeeeecccCCCCCCcEEEeEEEEEECCCCCCCCCCCceEEE
Q psy15052        150 KPLKESLGRPVNVYSNNEKVDDFSTESVNSLLTSQIKIRVGEYDFSKLEEPYPYQERGVVKKMVHPKYNFFTYEYDLALV  229 (422)
Q Consensus       150 v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~V~~i~iHp~y~~~~~~nDIALL  229 (422)
                      +.|....+. -+|..|..+|+|+.+|....   ..+.+..              ..+.+.+...-.  +......||+||
T Consensus        16 ~~i~t~~G~-~tgLgI~~~~~lvp~H~~~~---~~i~i~~--------------~~~~i~d~~~l~--~~~~~~~Dl~lv   75 (180)
T d1cqqa_          16 CVITTENGK-FTGLGVYDRFVVVPTHADPG---KEIQVDG--------------ITTKVIDSYDLY--NKNGIKLEITVL   75 (180)
T ss_dssp             EEEEETTEE-EEEEEEEBTEEEEEGGGCCC---SEEEETT--------------EEEEEEEEEEEE--CTTSCEEEEEEE
T ss_pred             EEEEECCeE-EEEEEEECCEEEEecccCCC---CEEEECC--------------EEEEeeceEEEE--ccCCCceEEEEE
Confidence            444443332 35777899999999997643   2222211              122232222111  122234699999


Q ss_pred             EECCCcccCCC
Q psy15052        230 RLETPVEFAPN  240 (422)
Q Consensus       230 kL~~pv~~s~~  240 (422)
                      +|.+.-.|.+.
T Consensus        76 klp~~~~frdi   86 (180)
T d1cqqa_          76 KLDRNEKFRDI   86 (180)
T ss_dssp             EECSSCCBCCG
T ss_pred             EcCCCcccCcc
Confidence            99876555553

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=95.36  E-value=0.0029  Score=52.02  Aligned_cols=43  Identities=23%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             CCCCCCccccCCCCceeEEeeeeecCcccCCCCCceEEEccCchhHHh
Q psy15052        371 GDSGGPLQVKGKDGRYFLAGIISWGIGCAEANLPGVCTRISKFVPWVL  418 (422)
Q Consensus       371 i~~~~pl~~~~~~~~~~l~g~~s~g~~~~~~~~~~v~~~v~~~~~Wi~  418 (422)
                      -+|++||....     .++||+|||..|+....+.+|++|+.++.+-.
T Consensus       141 GDSGgPl~~~~-----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~g  183 (187)
T d1hpga_         141 GDSGGAHFAGS-----VALGIHSGSSGCSGTAGSAIHQPVTEALSAYG  183 (187)
T ss_dssp             TCTTCEEEETT-----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHHT
T ss_pred             CCCCCeEEECC-----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHhC
Confidence            57999998754     49999999999988889999999999998754