Psyllid ID: psy15370

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALGKEKAAQNAQQQDPVSNELIRNEDEKLSLKLETFKKPSSSSISLKKVNLDKDVSESGPSSSSKKFSGEKRKLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
ccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccHHHHHccccEEEEEccccEEEEEEcccccEEEcccccccccccccccEEEEEEccccccEEEEEEEEccccEEEEEEccccccccEEEcccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcccccEcccccHHHHHHHHHHHccccEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccHccccccccEEEEEcccccccccccccccccccccHcccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccHHHHcccEEEEEEEccEEEEEEEEccccEEEEcHHHcEEEccccccEEEEEEccccccEEEEEEEccccEEEEEEEEccccccEEEEcEcHHHcccc
mgkhevgtpkYIANKMKAKGLQKLRWYCQMCQKqcrdengfkchtssEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGksgkcvvdetekgwfvtyidrdpeTIAFQQKMAKKEKMEQDDNERNMEFLERQIALGKEKAaqnaqqqdpvsnelirneDEKLSLKLEtfkkpssssislkkvnldkdvsesgpsssskkfsgekrKLTALEQIKLEEEEAKKKRIDQerqnsgeeswlhKNIIVKIVTKNLGekfykkkgtVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGkykgekavlkdiniddcnanvelidphydnkvvrnidyshicki
mgkhevgtpkyiankmkakgLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKekmeqddneRNMEFLERQIALGKEKAaqnaqqqdpvsnelirnEDEKLSLKLetfkkpssssislkkvnldkdvsesgpsssskkfsgekrklTALEQIkleeeeakkkridqerqnsgeeswlhkniIVKIvtknlgekfykkkgtvekvIDKYAAIVSLLDSKHKIKLDQEHLetvipnlgrQVLILCGKYKGEKAVLKDINIDDCNANvelidphydnkvvrniDYSHICKI
MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFqqkmakkekmeqDDNERNMEFLERQIALGKEKAAQNAQQQDPVSNELIRNEDEKLSLKLETFkkpssssislkkVNLDKDVsesgpsssskkfsgekrkLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
**********YIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIA**********************************************************************************************************************************WLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHIC**
******************KGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYID****************************************************************LKL*********************************************************************SWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQ*************ERNMEFLERQIALG*************VSNELIRNEDEKLSLKLETFKKPSSSSISLKKVN**********************KLTALEQIKLEEEE**************EESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
******GTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKE****DDNERNMEFLERQIALGKEKA********************KLS***ETF*************************************************************NSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMxxxxxxxxxxxxxxxxxxxxxIALGKEKAAQNAQQQDPVSNELIRNEDEKLSLKLETFKKPSSSSISLKKVNLDKDVSESGPSSSSKKFSGEKRKLTAxxxxxxxxxxxxxxxxxxxxxxxxxxSWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q8K339391 DNA/RNA-binding protein K yes N/A 0.966 0.971 0.483 1e-103
O60870393 DNA/RNA-binding protein K yes N/A 0.989 0.989 0.474 8e-96
Q9Y7X9304 KIN17-like protein OS=Sch yes N/A 0.501 0.648 0.477 1e-52
P40962232 Zinc finger protein RTS2 yes N/A 0.305 0.517 0.448 4e-27
Q55D16445 KIN17-like protein OS=Dic yes N/A 0.231 0.204 0.4 4e-13
Q9C801462 Protein MOS2 OS=Arabidops no N/A 0.338 0.287 0.328 6e-08
Q90X38506 G patch domain and KOW mo no N/A 0.300 0.233 0.252 2e-05
>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1 Back     alignment and function desciption
 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/403 (48%), Positives = 265/403 (65%), Gaps = 23/403 (5%)

Query: 1   MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
           MGK +  +PK IAN++K+KGLQKLRWYCQMCQKQCRDENGFKCH  SE+HQRQLLL ++N
Sbjct: 1   MGKSDFLSPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60

Query: 61  ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
             Q++D FS EF   +LELLRR+F T+RV  N VY +YI+ REH+HMNATQWETLT+F K
Sbjct: 61  PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120

Query: 121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALG 180
            LG+ G C VDET KGW++ YIDRDPETI  Q ++ KK+K + DD E+  +F+E Q+  G
Sbjct: 121 WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG 180

Query: 181 KEKAAQNAQQQDPVSNELIR-NEDEKLSLKLETFKKPSSSSISLKKVNLDKDV------S 233
            E      +Q+ PV  EL R NE+EK++  L      S+ + + K  +L          +
Sbjct: 181 LE----GKEQETPVFTELSRENEEEKVTFNLNKGAGGSAGATTSKSSSLGPSALKLLGSA 236

Query: 234 ESGPSSSSKKFSGE--KRKLTALEQI-KLEEEEAKKKRIDQERQNSGEESWLHKNIIVKI 290
            SG    S + S +  K+K +AL++I +LEEE+ +  R D         +WL   I+VKI
Sbjct: 237 ASGKRKESSQSSAQPAKKKKSALDEIMELEEEKKRTARTD---------AWLQPGIVVKI 287

Query: 291 VTKNLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGK 350
           +TK LGEK++KKKG V++VID+Y A+V + DS  ++KLDQ HLETVIP  G++VL+L G 
Sbjct: 288 ITKKLGEKYHKKKGVVKEVIDRYTAVVKMTDSGDRLKLDQTHLETVIPAPGKRVLVLNGG 347

Query: 351 YKGEKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393
           Y+G +  L+ IN    +A + +       + V  I Y  I K+
Sbjct: 348 YRGNEGTLESINEKAFSATIVIETGPLKGRRVEGIQYEDISKL 390
Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo. Binds via its C-terminal domain to RNA in vitro.
Mus musculus (taxid: 10090)
>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2 Back     alignment and function description
>sp|Q9Y7X9|KIN17_SCHPO KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.09c PE=3 SV=1 Back     alignment and function description
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTS2 PE=1 SV=1 Back     alignment and function description
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1 Back     alignment and function description
>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1 Back     alignment and function description
>sp|Q90X38|GPKOW_DANRE G patch domain and KOW motifs-containing protein OS=Danio rerio GN=gpkow PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
242017981388 zinc finger protein RTS2, putative [Pedi 0.959 0.971 0.567 1e-117
118781660390 AGAP010352-PA [Anopheles gambiae str. PE 0.961 0.969 0.523 1e-115
157127033390 hypothetical protein AaeL_AAEL000290 [Ae 0.956 0.964 0.534 1e-114
357621693385 putative zinc finger protein RTS2 [Danau 0.961 0.981 0.568 1e-112
193613224392 PREDICTED: DNA/RNA-binding protein KIN17 0.969 0.971 0.541 1e-111
239791868392 ACYPI007646 [Acyrthosiphon pisum] 0.969 0.971 0.541 1e-110
195127583390 GI13384 [Drosophila mojavensis] gi|19391 0.977 0.984 0.515 1e-110
380012299393 PREDICTED: DNA/RNA-binding protein KIN17 0.966 0.966 0.522 1e-110
170054703386 kin17 [Culex quinquefasciatus] gi|167874 0.964 0.981 0.517 1e-110
328787961393 PREDICTED: DNA/RNA-binding protein KIN17 0.969 0.969 0.521 1e-109
>gi|242017981|ref|XP_002429462.1| zinc finger protein RTS2, putative [Pediculus humanus corporis] gi|212514394|gb|EEB16724.1| zinc finger protein RTS2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/400 (56%), Positives = 293/400 (73%), Gaps = 23/400 (5%)

Query: 1   MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
           MGKHEVGTPKYIANK+KAKGLQKLRWYCQMCQKQCRDENGFKCHT SE+HQRQLL+FADN
Sbjct: 1   MGKHEVGTPKYIANKIKAKGLQKLRWYCQMCQKQCRDENGFKCHTMSESHQRQLLIFADN 60

Query: 61  ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
           A++Y+DEFSR+F +GYLELL+RQF T+RV ANKVYQDYI+DR H+HMNATQWETLT+FVK
Sbjct: 61  ANRYIDEFSRQFSDGYLELLKRQFGTKRVPANKVYQDYISDRHHLHMNATQWETLTDFVK 120

Query: 121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNMEFLERQIALG 180
            LG+ GKCVVDETEKGWFV YIDRDPETIA Q+ MAKK KME+DD ER M+F+E+Q+  G
Sbjct: 121 WLGREGKCVVDETEKGWFVAYIDRDPETIAMQEAMAKKAKMEKDDEERLMDFIEKQVERG 180

Query: 181 KEKAAQNAQQQDPVS-NELIR-NEDEKLSLKLETFKKPSSSSISLKK--VNL---DKDVS 233
           K+          PV   ELIR +ED+K+ L+L    K  + S  L K  +NL   DK++ 
Sbjct: 181 KQNIV-------PVEYTELIRESEDDKIKLELNLALKKVNESKPLTKPPINLLTKDKNMK 233

Query: 234 ESGPSSSSKKFSGEKRKLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTK 293
           ++  S S   FS +++  +AL++I  EEE+ K+       + + ++ WL   I+VKI+TK
Sbjct: 234 KNVKSDSLPPFSNKRK--SALDEILEEEEKRKE-------KKNRKDYWLSVGIVVKIITK 284

Query: 294 NLGEKFYKKKGTVEKVIDKYAAIVSLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKG 353
           +LG+K+YKKKG +E + D Y   V + D+   IK+DQEHLETVIP+ GR V I+ G Y+G
Sbjct: 285 SLGDKYYKKKGVIESIKDNYIGNVRMFDTNDLIKIDQEHLETVIPSEGRLVKIVNGAYRG 344

Query: 354 EKAVLKDINIDDCNANVELIDPHYDNKVVRNIDYSHICKI 393
           E+A+LK+I+     A +E+       ++V+N  Y    K+
Sbjct: 345 EEAILKEIHEKKFCATLEISSGLLKGRIVQNCKYEDFSKL 384

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|118781660|ref|XP_311588.3| AGAP010352-PA [Anopheles gambiae str. PEST] gi|116130057|gb|EAA45011.3| AGAP010352-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157127033|ref|XP_001654770.1| hypothetical protein AaeL_AAEL000290 [Aedes aegypti] gi|108884475|gb|EAT48700.1| AAEL000290-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|357621693|gb|EHJ73444.1| putative zinc finger protein RTS2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|193613224|ref|XP_001950906.1| PREDICTED: DNA/RNA-binding protein KIN17-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|239791868|dbj|BAH72345.1| ACYPI007646 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195127583|ref|XP_002008248.1| GI13384 [Drosophila mojavensis] gi|193919857|gb|EDW18724.1| GI13384 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|380012299|ref|XP_003690223.1| PREDICTED: DNA/RNA-binding protein KIN17-like [Apis florea] Back     alignment and taxonomy information
>gi|170054703|ref|XP_001863250.1| kin17 [Culex quinquefasciatus] gi|167874937|gb|EDS38320.1| kin17 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328787961|ref|XP_394964.4| PREDICTED: DNA/RNA-binding protein KIN17 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
FB|FBgn0024887390 kin17 "kin17" [Drosophila mela 0.534 0.538 0.596 4.8e-95
UNIPROTKB|J9NZP3392 KIN "Uncharacterized protein" 0.989 0.992 0.453 2.2e-89
ZFIN|ZDB-GENE-030131-3689385 kin "KIN, antigenic determinan 0.972 0.992 0.470 2.2e-89
UNIPROTKB|E2RNV7391 KIN "Uncharacterized protein" 0.972 0.976 0.461 3.6e-89
UNIPROTKB|O60870393 KIN "DNA/RNA-binding protein K 0.989 0.989 0.449 5.9e-89
RGD|1596107392 Kin "antigenic determinant of 0.984 0.987 0.448 7.5e-89
UNIPROTKB|E1BND1392 E1BND1 "Uncharacterized protei 0.989 0.992 0.450 9.6e-89
MGI|MGI:96676391 Kin "antigenic determinant of 0.987 0.992 0.448 2.5e-88
UNIPROTKB|B4DX32374 KIN "DNA/RNA-binding protein K 0.931 0.978 0.463 1.4e-87
TAIR|locus:2193859411 AT1G55460 [Arabidopsis thalian 0.531 0.508 0.509 1.3e-84
FB|FBgn0024887 kin17 "kin17" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 693 (249.0 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
 Identities = 127/213 (59%), Positives = 162/213 (76%)

Query:     1 MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADN 60
             MG+ EVGTPKY+ANKMK+KGLQKLRWYCQMC+KQCRDENGFKCHT SE+HQRQLLLFADN
Sbjct:     1 MGRAEVGTPKYLANKMKSKGLQKLRWYCQMCEKQCRDENGFKCHTMSESHQRQLLLFADN 60

Query:    61 ADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVK 120
               ++L  FS+EF +GY+ELLRR+F T+R  ANK+YQ+YIA +EH+HMNAT+W TL+++VK
Sbjct:    61 PGKFLHSFSKEFSDGYMELLRRRFGTKRTSANKIYQEYIAHKEHIHMNATRWLTLSDYVK 120

Query:   121 HLGKSGKCVVDETEKGWFVTYIDRDPETIAFXXXXXXXXXXXXDDNERNMEFLERQIALG 180
              LG++G+ + DETEKGWFVTYIDR PE +              DD ER  +F+E+QI   
Sbjct:   121 WLGRTGQVIADETEKGWFVTYIDRSPEAMERQAKADSKEKMEKDDEERMADFIEQQIKNA 180

Query:   181 KEKAAQNAQQQDPVSNELIRNEDE--KLSLKLE 211
             K K  +  + Q+  + EL R E+E  KL ++LE
Sbjct:   181 KAKDGEEDEGQEKFT-ELKREENEPLKLDIRLE 212
GO:0003676 "nucleic acid binding" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC
UNIPROTKB|J9NZP3 KIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3689 kin "KIN, antigenic determinant of recA protein homolog (mouse)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNV7 KIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O60870 KIN "DNA/RNA-binding protein KIN17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1596107 Kin "antigenic determinant of rec-A protein homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND1 E1BND1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:96676 Kin "antigenic determinant of rec-A protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4DX32 KIN "DNA/RNA-binding protein KIN17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2193859 AT1G55460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K339KIN17_MOUSENo assigned EC number0.48380.96690.9718yesN/A
O60870KIN17_HUMANNo assigned EC number0.47470.98980.9898yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
pfam10357127 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-b 5e-60
cd1315554 cd13155, KOW_KIN17, KOW_Kin17 is a RNA-binding mot 4e-12
cd1315351 cd13153, KOW_GPKOW_B, KOW motif of the "G-patch do 5e-04
pfam1287425 pfam12874, zf-met, Zinc-finger of C2H2 type 0.004
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein Back     alignment and domain information 
 Score =  190 bits (484), Expect = 5e-60
 Identities = 73/126 (57%), Positives = 100/126 (79%)

Query: 52  RQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQ 111
           RQ+LLF  N  +++D+FS+EFE+ +L+LLR +   +R+ ANKVY +YIAD++HVHMNAT+
Sbjct: 1   RQMLLFGQNPKKFIDQFSKEFEKDFLQLLRTRHGEKRIHANKVYNEYIADKDHVHMNATR 60

Query: 112 WETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEKMEQDDNERNME 171
           W +LTEFVK+LG+ GKC V+ETEKGWF+TYIDR PE +  Q+++ KKEK E+ D ER  +
Sbjct: 61  WTSLTEFVKYLGREGKCKVEETEKGWFITYIDRSPEALKRQEELRKKEKQEKTDEEREQK 120

Query: 172 FLERQI 177
            LE QI
Sbjct: 121 LLEEQI 126

Kin17_mid is the conserved central 169 residue region of a family of Kin17 proteins. Towards the N-terminal end there is a zinc-finger domain, and in human and mouse members there is a RecA-like domain further downstream. The Kin17 protein in humans forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle. Length = 127
>gnl|CDD|240519 cd13155, KOW_KIN17, KOW_Kin17 is a RNA-binding motif Back     alignment and domain information
>gnl|CDD|240517 cd13153, KOW_GPKOW_B, KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B Back     alignment and domain information
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
KOG2837|consensus309 100.0
PF10357127 Kin17_mid: Domain of Kin17 curved DNA-binding prot 100.0
KOG4315|consensus455 99.64
KOG1999|consensus1024 98.2
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 97.45
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.24
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 97.16
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 96.88
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 96.69
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 96.41
CHL0014183 rpl24 ribosomal protein L24; Validated 96.33
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 95.81
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 95.58
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 95.57
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 95.47
PTZ00194143 60S ribosomal protein L26; Provisional 95.24
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 95.01
PRK05609181 nusG transcription antitermination protein NusG; V 94.87
TIGR00922172 nusG transcription termination/antitermination fac 94.65
PRK08559153 nusG transcription antitermination protein NusG; V 94.22
PLN00036261 40S ribosomal protein S4; Provisional 93.61
PRK04313237 30S ribosomal protein S4e; Validated 93.57
PTZ00118262 40S ribosomal protein S4; Provisional 93.2
PTZ00223273 40S ribosomal protein S4; Provisional 92.89
COG0250178 NusG Transcription antiterminator [Transcription] 92.61
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 92.03
PRK09014162 rfaH transcriptional activator RfaH; Provisional 91.7
PF1162353 DUF3252: Protein of unknown function (DUF3252); In 91.6
TIGR01955159 RfaH transcriptional activator RfaH. This model re 91.56
COG1471241 RPS4A Ribosomal protein S4E [Translation, ribosoma 91.38
TIGR01956258 NusG_myco NusG family protein. This model represen 89.58
PF0622038 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi 86.55
COG5164 607 SPT5 Transcription elongation factor [Transcriptio 83.31
PF15057124 DUF4537: Domain of unknown function (DUF4537) 82.07
PF0753549 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc 81.99
PF1559174 Imm17: Immunity protein 17 81.15
>KOG2837|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.4e-115  Score=829.54  Aligned_cols=306  Identities=55%  Similarity=0.911  Sum_probs=267.0

Q ss_pred             CCCCCCCCHHHHHHHhhhccccceeeeecchhhhccCcCccccccCCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q psy15370          1 MGKHEVGTPKYIANKMKAKGLQKLRWYCQMCQKQCRDENGFKCHTSSEAHQRQLLLFADNADQYLDEFSREFEEGYLELL   80 (393)
Q Consensus         1 Mgkae~~t~K~ian~~KakGLqkLrwyCQ~CqKQCRDeNGFKcH~~SesH~rqm~~~~~n~~~~i~~~S~~F~~~Fl~lL   80 (393)
                      ||+|||||||||||+||||||||||||||||||||||+||||||||||||||||++|+.||.+++++||.+|+.+||+||
T Consensus         1 MGkad~~tpK~ianr~ksKGLQKlRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~Np~~~~~~fs~eF~~dFl~LL   80 (309)
T KOG2837|consen    1 MGKADFGTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALNPGRSLERFSNEFEKDFLSLL   80 (309)
T ss_pred             CCccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhCcchhHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCcceeeccchhhhhhcCCCceeecccccccHHHHHHHhccccceEeeccccceEEEeecCCHHHHHHHHHHHHHHh
Q psy15370         81 RRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEK  160 (393)
Q Consensus        81 r~~~g~krv~aN~vY~eyI~dr~HvHMNaT~W~sLt~Fvk~Lgr~g~~~v~et~kg~~i~~Id~~pe~~~r~~~~~~~~~  160 (393)
                      |++||+|||+||+||||||+||+|||||||+|.|||+||+||||+|+|+||+||+||||+|||++|+++.|+.+..++++
T Consensus        81 r~~~g~KrI~aN~VYnEYI~dR~HvHMNaT~w~SLtefvk~LGR~Gkc~vdetekgw~i~yIdk~petl~r~~~d~~r~r  160 (309)
T KOG2837|consen   81 RQRHGTKRIGANKVYNEYIADRNHVHMNATRWRSLTEFVKYLGRTGKCKVDETEKGWFITYIDKFPETLKRIEEDLKRER  160 (309)
T ss_pred             HHHhccceechhHHHHHHHccccceeecchhhhhHHHHHHHhccCceeeeecCCCceEEEEeccChhhhcchhhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccCcce---EEeeccCCCCCCCcccccccCCccccccCCC
Q psy15370        161 MEQDDNERNMEFLERQIALGKEKAAQNAQQQDPVSNELIRNEDEKL---SLKLETFKKPSSSSISLKKVNLDKDVSESGP  237 (393)
Q Consensus       161 ~~~~dee~~~~~i~~qi~r~~~~~~~~~~~~~~~~~~l~r~~~~ki---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (393)
                      ++.+|||+.+++|+.||.||++..+.  +.+++..+||.|+.+++-   ..+...+..  .+|++.+           .+
T Consensus       161 qe~~dEe~~~~~id~Qi~Rake~g~~--e~e~e~~~El~~d~~~~~~~v~~~~~~sk~--~~p~~kk-----------~~  225 (309)
T KOG2837|consen  161 QEKDDEERGADLIDGQIKRAKEQGEK--EYEPEMNTELSRDGDDERKSVVVSSALSKR--VNPKAKK-----------LP  225 (309)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccc--ccccccccccccCCccccccceeeeeccCc--CChhhhc-----------CC
Confidence            99999999999999999999982221  234556789999655442   222111111  1121111           00


Q ss_pred             CCCCCCcCccccCCCHHHHHhhHHHHHHHhhhhhhhcCCCCCCcccCceEEEEeeccCCcccccceeEEEEecCCceEEE
Q psy15370        238 SSSSKKFSGEKRKLTALEQIKLEEEEAKKKRIDQERQNSGEESWLHKNIIVKIVTKNLGEKFYKKKGTVEKVIDKYAAIV  317 (393)
Q Consensus       238 ~s~~~~~~~~~~k~saldeim~~~ee~kk~~~~~~~~~~r~~~WL~~~IvVKIidK~l~dgyYkkKGvV~dV~d~~~c~V  317 (393)
                      .++.+        .++-||||+ +||.+|              |     +|+|++++++.+ |++||||.+|+|.|++.|
T Consensus       226 ~~~~~--------~~~rdEi~~-~ee~kk--------------w-----~vk~~sk~l~~k-~K~K~vv~~vid~y~~~~  276 (309)
T KOG2837|consen  226 PDKDG--------GKKRDEIMK-MEERKK--------------W-----VVKVISKSLGEK-YKQKGVVKKVIDDYTGQI  276 (309)
T ss_pred             CCccc--------ccchHHHHH-hhhcCc--------------e-----EEEeehhhhhHH-hccccHHHHHHHhhhhhe
Confidence            10111        112299998 666432              8     999999999998 999999999999999999


Q ss_pred             EEcCCCcEEEeecCceeeecCCCCCeEEEEecCccCceE
Q psy15370        318 SLLDSKHKIKLDQEHLETVIPNLGRQVLILCGKYKGEKA  356 (393)
Q Consensus       318 ~l~d~g~~l~VdQ~~LETVIP~~G~~V~VV~G~~RG~~G  356 (393)
                      + +|+|++|+|||+|||||||+     |||||+|||..|
T Consensus       277 K-ld~g~~lk~dq~~lEtvip~-----~~vng~yRg~~~  309 (309)
T KOG2837|consen  277 K-LDSGTVLKVDQEHLETVIPQ-----MIVNGAYRGSEA  309 (309)
T ss_pred             e-ccCCceecccHHHHHHHhHH-----HHhhhhhccCCC
Confidence            9 67999999999999999999     999999999754

>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins Back     alignment and domain information
>KOG4315|consensus Back     alignment and domain information
>KOG1999|consensus Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>PLN00036 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PRK04313 30S ribosomal protein S4e; Validated Back     alignment and domain information
>PTZ00118 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PTZ00223 40S ribosomal protein S4; Provisional Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF15591 Imm17: Immunity protein 17 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2v1n_A111 Solution Structure Of The Region 51-160 Of Human Ki 2e-34
2ckk_A127 High Resolution Crystal Structure Of The Human Kin1 7e-24
>pdb|2V1N|A Chain A, Solution Structure Of The Region 51-160 Of Human Kin17 Reveals A Winged Helix Fold Length = 111 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 78/99 (78%)
Query: 51  QRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNAT 110
           QRQLLL ++N  Q++D FS EF   +LELLRR+F T+RV  N VY +YI+ REH+HMNAT
Sbjct: 2   QRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNAT 61
Query: 111 QWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETI 149
           QWETLT+F K LG+ G C VDET KGW++ YIDRDPETI
Sbjct: 62  QWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETI 100
>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C- Terminal Domain Containing A Kow Motif Kin17 Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2v1n_A111 KIN17, protein KIN homolog; nuclear protein, winge 1e-53
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 3e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens} Length = 111 Back     alignment and structure
 Score =  172 bits (438), Expect = 1e-53
 Identities = 68/110 (61%), Positives = 85/110 (77%)

Query: 51  QRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNAT 110
           QRQLLL ++N  Q++D FS EF   +LELLRR+F T+RV  N VY +YI+ REH+HMNAT
Sbjct: 2   QRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNAT 61

Query: 111 QWETLTEFVKHLGKSGKCVVDETEKGWFVTYIDRDPETIAFQQKMAKKEK 160
           QWETLT+F K LG+ G C VDET KGW++ YIDRDPETI  Q ++ KK+K
Sbjct: 62  QWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKK 111
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
2v1n_A111 KIN17, protein KIN homolog; nuclear protein, winge 100.0
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 100.0
1nz9_A58 Transcription antitermination protein NUSG; transc 96.94
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 96.55
3p8b_B152 Transcription antitermination protein NUSG; transc 95.67
3cw1_L77 U1 small nuclear ribonucleoprotein C; PRE-mRNA spl 95.43
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 95.22
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 95.19
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 95.11
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 94.84
2jvv_A181 Transcription antitermination protein NUSG; transc 94.7
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 94.63
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 94.61
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 94.6
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 94.6
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 94.38
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 94.21
2jz2_A66 SSL0352 protein; SH3-like, synechocystis SP. PCC 6 93.54
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 93.45
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 92.64
3kbg_A213 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR2 92.44
1zr9_A124 Zinc finger protein 593; DNA binding, structural g 92.32
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 90.45
2xzm_W260 40S ribosomal protein S4; ribosome, translation; 3 89.64
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 89.49
3j20_E243 30S ribosomal protein S4E; archaea, archaeal, KINK 88.59
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 88.26
3iz6_D265 40S ribosomal protein S4 (S4E); eukaryotic ribosom 87.61
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 86.79
2qqr_A118 JMJC domain-containing histone demethylation prote 86.33
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 85.84
1m1h_A248 Transcription antitermination protein NUSG; transc 85.78
3u5c_E261 RP5, S7, YS6, 40S ribosomal protein S4-A; translat 85.28
2diq_A110 Tudor and KH domain-containing protein; tudor doma 80.61
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.2e-60  Score=401.46  Aligned_cols=110  Identities=62%  Similarity=1.065  Sum_probs=107.4

Q ss_pred             HHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhcCcceeeccchhhhhhcCCCceeecccccccHHHHHHHhccccceEe
Q psy15370         51 QRQLLLFADNADQYLDEFSREFEEGYLELLRRQFSTRRVFANKVYQDYIADREHVHMNATQWETLTEFVKHLGKSGKCVV  130 (393)
Q Consensus        51 ~rqm~~~~~n~~~~i~~~S~~F~~~Fl~lLr~~~g~krv~aN~vY~eyI~dr~HvHMNaT~W~sLt~Fvk~Lgr~g~~~v  130 (393)
                      ||||++|++||++||++||++|+++||+|||++||+|||+||+||||||+||+|||||||+|+|||+||+||||+|+|+|
T Consensus         2 ~Rqm~l~~en~~k~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYnEyI~dk~HiHMNaT~W~tLT~Fvk~Lgr~G~c~V   81 (111)
T 2v1n_A            2 QRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKV   81 (111)
T ss_dssp             CCCCCCCCCCGGGCHHHHHHHHHHHHHHHHHHHTSSCEEEHHHHHHHHTTSSCCCCGGGSSCSSHHHHHHHHTTTTSEEE
T ss_pred             hhHHHHHHhCHhhHHHHHHHHHHHHHHHHHHHhcCCcEeehhHHHHHHhcccccccccccccccHHHHHHHhccCCeEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccceEEEeecCCHHHHHHHHHHHHHHh
Q psy15370        131 DETEKGWFVTYIDRDPETIAFQQKMAKKEK  160 (393)
Q Consensus       131 ~et~kg~~i~~Id~~pe~~~r~~~~~~~~~  160 (393)
                      ||||+||||+|||+|||+++|+++..++++
T Consensus        82 ~etekG~~I~yId~~pe~l~r~~~~~kk~k  111 (111)
T 2v1n_A           82 DETPKGWYIQYIDRDPETIRRQLELEKKKK  111 (111)
T ss_dssp             EEETTEEEEEECCSSHHHHHHHHHTGGGTC
T ss_pred             ecCCCceEEEeecCCHHHHHHHHHHHhhcC
Confidence            999999999999999999999999888763
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Back     alignment and structure
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.29
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.04
d1zr9a167 Zinc finger protein 593, ZNF593 {Human (Homo sapie 96.83
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 95.55
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 93.8
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 92.9
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 92.06
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 89.59
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 88.65
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 86.84
d2ctda230 Zinc finger protein 512, ZNF512 {Human (Homo sapie 80.61
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.00027  Score=51.69  Aligned_cols=51  Identities=20%  Similarity=0.321  Sum_probs=42.4

Q ss_pred             CCCCeEEEEecCccCceEEEEEeeCCCceEEEEecCCCCCCc-eeeecccccccc
Q psy15370        339 NLGRQVLILCGKYKGEKAVLKDINIDDCNANVELIDPHYDNK-VVRNIDYSHICK  392 (393)
Q Consensus       339 ~~G~~V~VV~G~~RG~~G~LisiD~~k~~a~V~l~~G~~~g~-~v~~l~yddicK  392 (393)
                      ++|+.|+|+.|++.|..|++.++|.++..|.|.|+-   -|+ +...+++++|-|
T Consensus         6 ~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V~v~i---fGr~t~vel~~~~ieK   57 (58)
T d1nz9a_           6 REGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTI---FGRETPVELDFSQVVK   57 (58)
T ss_dssp             CTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEES---SSSEEEEEECGGGEEE
T ss_pred             cCCCEEEEeccCCCCCEEEEEEEcCCCCEEEEEEEe---cCCCceEeeCHHHEEc
Confidence            789999999999999999999999999988888774   233 233588888865
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure